Your job contains 1 sequence.
>psy11929
MDGNGDGKIDEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACP
DRIVTVSGSVDNSSTSSVETGYPGHTLWVTSVDNVCTAYNFMCRSLEDYHINRNRMENCS
PQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDT
ISQAIYQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEVAG
KKQPHPLAGLAVLGIEGIGSTSLTPAALAALSGSRVKSGGKDTGDDFVETEIVLTDDIAG
CVIGKAGSRLLEIRQISGAQINIHTGTESHKKMFHIQGCQEAVSLAQYLINMCIELQKNN
TTNTSDNPEPADLDAAISAFMTASVNSSLIEKPTPHPGSMVTLGGLSELLANIAASNVKS
TVQTTGAYRRDVE
The BLAST search returned 12 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy11929
(433 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1NPL2 - symbol:PCBP3 "Uncharacterized protein"... 353 3.1e-57 3
RGD|1307430 - symbol:Pcbp3 "poly(rC) binding protein 3" s... 353 1.7e-56 3
UNIPROTKB|B4DXP5 - symbol:PCBP2 "Poly(rC)-binding protein... 348 1.5e-55 3
MGI|MGI:1890470 - symbol:Pcbp3 "poly(rC) binding protein ... 475 3.3e-55 2
UNIPROTKB|D4A1P3 - symbol:Pcbp3 "Protein Pcbp3" species:1... 475 3.3e-55 2
UNIPROTKB|G3V0E8 - symbol:PCBP2 "Poly(RC) binding protein... 343 4.9e-55 3
UNIPROTKB|E2QUE1 - symbol:PCBP3 "Uncharacterized protein"... 475 6.9e-55 2
UNIPROTKB|P57721 - symbol:PCBP3 "Poly(rC)-binding protein... 475 6.9e-55 2
UNIPROTKB|P57723 - symbol:PCBP4 "Poly(rC)-binding protein... 301 1.0e-54 3
UNIPROTKB|E2RCH9 - symbol:PCBP3 "Uncharacterized protein"... 472 1.4e-54 2
ZFIN|ZDB-GENE-050522-157 - symbol:pcbp3 "poly(rC) binding... 302 2.4e-54 4
UNIPROTKB|E2RG64 - symbol:PCBP4 "Uncharacterized protein"... 304 3.3e-54 3
UNIPROTKB|I3LRN5 - symbol:PCBP4 "Uncharacterized protein"... 302 3.3e-54 3
ZFIN|ZDB-GENE-030131-563 - symbol:pcbp2 "poly(rC) binding... 341 5.4e-54 3
UNIPROTKB|E9PFP8 - symbol:PCBP3 "Poly(rC)-binding protein... 306 6.9e-54 3
UNIPROTKB|F1NPL3 - symbol:PCBP3 "Uncharacterized protein"... 311 2.3e-53 3
UNIPROTKB|E1BVU6 - symbol:LOC100858906 "Uncharacterized p... 467 3.3e-53 2
UNIPROTKB|Q0VCU0 - symbol:PCBP4 "Poly(rC)-binding protein... 298 4.7e-53 3
MGI|MGI:1890471 - symbol:Pcbp4 "poly(rC) binding protein ... 299 1.2e-52 3
RGD|1307910 - symbol:Pcbp4 "poly(rC) binding protein 4" s... 299 1.6e-52 3
UNIPROTKB|E2RCF9 - symbol:PCBP2 "Uncharacterized protein"... 453 3.7e-52 2
UNIPROTKB|Q15366 - symbol:PCBP2 "Poly(rC)-binding protein... 301 6.6e-52 3
RGD|1309626 - symbol:Pcbp2 "poly(rC) binding protein 2" s... 301 6.6e-52 3
MGI|MGI:108202 - symbol:Pcbp2 "poly(rC) binding protein 2... 296 2.2e-51 3
UNIPROTKB|F8VZX2 - symbol:PCBP2 "Poly(rC)-binding protein... 309 4.5e-51 3
UNIPROTKB|J9P8W8 - symbol:PCBP2 "Uncharacterized protein"... 307 7.3e-51 3
UNIPROTKB|F1SFQ4 - symbol:PCBP2 "Uncharacterized protein"... 301 1.2e-50 3
UNIPROTKB|H3BRU6 - symbol:PCBP2 "Poly(rC)-binding protein... 309 4.0e-50 3
UNIPROTKB|Q3SYT9 - symbol:PCBP2 "Poly(RC) binding protein... 296 4.0e-50 3
UNIPROTKB|Q5E9A3 - symbol:PCBP1 "Poly(rC)-binding protein... 305 5.0e-50 3
UNIPROTKB|J9P7Y9 - symbol:PCBP1 "Uncharacterized protein"... 305 5.0e-50 3
UNIPROTKB|Q15365 - symbol:PCBP1 "Poly(rC)-binding protein... 305 5.0e-50 3
UNIPROTKB|I3LEC2 - symbol:PCBP1 "Uncharacterized protein"... 305 5.0e-50 3
MGI|MGI:1345635 - symbol:Pcbp1 "poly(rC) binding protein ... 305 5.0e-50 3
RGD|1561319 - symbol:Pcbp1 "poly(rC) binding protein 1" s... 305 5.0e-50 3
UNIPROTKB|C9J0A4 - symbol:PCBP4 "Poly(rC)-binding protein... 301 1.0e-49 3
UNIPROTKB|J3QT27 - symbol:PCBP3 "Poly(rC)-binding protein... 258 2.3e-48 3
ZFIN|ZDB-GENE-070424-78 - symbol:zgc:162999 "zgc:162999" ... 411 4.2e-47 2
FB|FBgn0262737 - symbol:mub "mushroom-body expressed" spe... 382 1.7e-45 2
UNIPROTKB|F1NPL4 - symbol:PCBP3 "Uncharacterized protein"... 353 8.5e-43 2
UNIPROTKB|F8VWQ4 - symbol:PCBP2 "Poly(rC)-binding protein... 298 9.5e-42 2
UNIPROTKB|F8VRG9 - symbol:PCBP2 "Poly(rC)-binding protein... 296 1.5e-41 2
ZFIN|ZDB-GENE-040426-2122 - symbol:zgc:65870 "zgc:65870" ... 425 6.8e-40 1
UNIPROTKB|F1M8T3 - symbol:F1M8T3 "Uncharacterized protein... 325 1.5e-39 2
UNIPROTKB|Q9GZT1 - symbol:PCBP4 "Poly(rC)-binding protein... 189 4.1e-38 4
UNIPROTKB|Q17QV0 - symbol:PCBP3 "Uncharacterized protein"... 312 9.3e-38 2
UNIPROTKB|D4A8D6 - symbol:D4A8D6 "Uncharacterized protein... 340 9.2e-36 2
UNIPROTKB|B4DLC0 - symbol:PCBP2 "Poly(rC)-binding protein... 296 1.2e-35 2
UNIPROTKB|H9L011 - symbol:LOC426023 "Uncharacterized prot... 296 1.2e-35 2
ZFIN|ZDB-GENE-050706-149 - symbol:zgc:110045 "zgc:110045"... 288 8.1e-35 2
UNIPROTKB|F8VRH0 - symbol:PCBP2 "Poly(rC)-binding protein... 352 3.7e-32 1
UNIPROTKB|F1LT74 - symbol:F1LT74 "Uncharacterized protein... 297 4.3e-32 2
UNIPROTKB|I3LRF8 - symbol:PCBP3 "Uncharacterized protein"... 245 3.9e-30 2
WB|WBGene00003978 - symbol:pes-4 species:6239 "Caenorhabd... 270 1.6e-29 2
UNIPROTKB|F1LU04 - symbol:F1LU04 "Uncharacterized protein... 320 9.1e-29 1
UNIPROTKB|F8VXH9 - symbol:PCBP2 "Poly(rC)-binding protein... 247 1.2e-27 2
UNIPROTKB|C9JZY3 - symbol:PCBP4 "Poly(rC)-binding protein... 222 1.3e-27 2
UNIPROTKB|E2RCG0 - symbol:PCBP2 "Uncharacterized protein"... 190 1.1e-26 2
UNIPROTKB|F8W0G4 - symbol:PCBP2 "Poly(rC)-binding protein... 214 4.7e-26 2
UNIPROTKB|D4ADH2 - symbol:D4ADH2 "Uncharacterized protein... 232 5.2e-25 2
UNIPROTKB|G4N5A5 - symbol:MGG_16887 "Uncharacterized prot... 180 3.5e-23 3
UNIPROTKB|D4ACH3 - symbol:D4ACH3 "Uncharacterized protein... 194 3.0e-21 2
ASPGD|ASPL0000045500 - symbol:AN10257 species:162425 "Eme... 169 9.7e-21 3
POMBASE|SPCC757.09c - symbol:rnc1 "RNA-binding protein th... 158 1.4e-18 3
UNIPROTKB|E1C453 - symbol:HNRNPK "Heterogeneous nuclear r... 133 3.3e-18 3
UNIPROTKB|Q5ZIQ3 - symbol:HNRNPK "Heterogeneous nuclear r... 133 3.3e-18 3
UNIPROTKB|I3LQS0 - symbol:HNRNPK "Uncharacterized protein... 133 4.0e-18 3
WB|WBGene00017816 - symbol:F26B1.2b species:6239 "Caenorh... 132 4.9e-18 3
UNIPROTKB|P91277 - symbol:F26B1.2 "Protein F26B1.2, isofo... 132 4.9e-18 3
UNIPROTKB|Q3T0D0 - symbol:HNRNPK "Heterogeneous nuclear r... 133 5.0e-18 3
UNIPROTKB|H9L242 - symbol:HNRPK "Uncharacterized protein"... 131 5.7e-18 3
ZFIN|ZDB-GENE-040426-1923 - symbol:hnrpkl "heterogeneous ... 132 5.8e-18 3
ZFIN|ZDB-GENE-040426-1926 - symbol:hnrnpk "heterogeneous ... 131 5.8e-18 3
ASPGD|ASPL0000075803 - symbol:AN4546 species:162425 "Emer... 158 5.9e-18 3
SGD|S000000437 - symbol:PBP2 "RNA binding protein" specie... 167 6.2e-18 3
UNIPROTKB|H9L0I0 - symbol:HNRPK "Uncharacterized protein"... 131 7.2e-18 3
UNIPROTKB|P61978 - symbol:HNRNPK "Heterogeneous nuclear r... 131 8.5e-18 3
MGI|MGI:99894 - symbol:Hnrnpk "heterogeneous nuclear ribo... 131 8.5e-18 3
RGD|71058 - symbol:Hnrnpk "heterogeneous nuclear ribonucl... 131 8.5e-18 3
UNIPROTKB|E2RA50 - symbol:E2RA50 "Uncharacterized protein... 129 1.5e-16 3
UNIPROTKB|E2RJ54 - symbol:E2RJ54 "Uncharacterized protein... 128 2.0e-16 3
UNIPROTKB|Q5T6W5 - symbol:HNRNPK "Heterogeneous nuclear r... 133 9.6e-16 3
UNIPROTKB|H3BSS4 - symbol:PCBP2 "Poly(rC)-binding protein... 149 1.1e-14 2
FB|FBgn0015907 - symbol:bl "bancal" species:7227 "Drosoph... 131 3.0e-14 3
UNIPROTKB|C9JTY5 - symbol:PCBP4 "Poly(rC)-binding protein... 111 1.4e-13 2
UNIPROTKB|B3KM64 - symbol:PCBP4 "cDNA FLJ10382 fis, clone... 182 1.8e-13 1
UNIPROTKB|F8W1G6 - symbol:PCBP2 "Poly(rC)-binding protein... 126 2.6e-13 2
UNIPROTKB|J9P8J3 - symbol:J9P8J3 "Uncharacterized protein... 129 1.1e-12 3
TAIR|locus:2831364 - symbol:AT4G18375 "AT4G18375" species... 146 1.8e-12 2
CGD|CAL0001510 - symbol:PBP2 species:5476 "Candida albica... 163 1.8e-12 3
CGD|CAL0000592 - symbol:orf19.5627 species:5476 "Candida ... 124 6.2e-12 2
UNIPROTKB|F1LMZ7 - symbol:Nova1 "RNA-binding protein Nova... 123 2.5e-11 3
UNIPROTKB|D3DS81 - symbol:NOVA1 "Neuro-oncological ventra... 122 3.5e-11 3
UNIPROTKB|F1LXN9 - symbol:F1LXN9 "Uncharacterized protein... 117 4.1e-11 3
RGD|621345 - symbol:Nova1 "neuro-oncological ventral anti... 120 5.5e-11 3
UNIPROTKB|G3X7R5 - symbol:NOVA1 "Uncharacterized protein"... 121 5.5e-11 3
UNIPROTKB|J9NXS6 - symbol:NOVA1 "Uncharacterized protein"... 121 5.5e-11 3
MGI|MGI:104297 - symbol:Nova1 "neuro-oncological ventral ... 121 5.5e-11 3
UNIPROTKB|D4AAF8 - symbol:Nova1 "RNA-binding protein Nova... 121 5.5e-11 3
UNIPROTKB|P51513 - symbol:NOVA1 "RNA-binding protein Nova... 120 7.5e-11 3
WARNING: Descriptions of 94 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|F1NPL2 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00812713 Ensembl:ENSGALT00000021485 ArrayExpress:F1NPL2
Uniprot:F1NPL2
Length = 319
Score = 353 (129.3 bits), Expect = 3.1e-57, Sum P(3) = 3.1e-57
Identities = 73/154 (47%), Positives = 100/154 (64%)
Query: 83 PGHTLWVTS-VDNVCTAYNFMCRSLE-DYHINRNRMENCSPQPLQLKLVIPATHCGSLIG 140
P + +T D + A++ + E D + + S P+ L+LV+PA+ CGSLIG
Sbjct: 55 PERIVTITGPTDAIFKAFSMIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIG 114
Query: 141 KGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVV 200
KGG KIK+IR+ +GA VQVA DMLP STER VT+ G PD I Q + QIC+V++E
Sbjct: 115 KGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESP---P 171
Query: 201 KGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVP 234
KGA IPY PK +A P+I +GGQA+T+ G+YA+P
Sbjct: 172 KGATIPYRPKPASA-PIIFAGGQAFTIQGQYAIP 204
Score = 149 (57.5 bits), Expect = 3.1e-57, Sum P(3) = 3.1e-57
Identities = 31/62 (50%), Positives = 43/62 (69%)
Query: 291 EIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQGCQEAVSLAQYL 349
E+ + +D+ GC+IG+ GS++ EIRQ+SGAQI I TE S ++ I G +SLAQYL
Sbjct: 245 ELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANATEGSAERQVTITGSPANISLAQYL 304
Query: 350 IN 351
IN
Sbjct: 305 IN 306
Score = 117 (46.2 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
Identities = 30/74 (40%), Positives = 43/74 (58%)
Query: 115 RMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTV 174
R++ SP +L IP G +IG+ G KI +IR +SGA +++A+ S ER VT+
Sbjct: 234 RLDATSPTSSH-ELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIAN-ATEGSAERQVTI 291
Query: 175 HGNPDTISQAIYQI 188
G+P IS A Y I
Sbjct: 292 TGSPANISLAQYLI 305
Score = 116 (45.9 bits), Expect = 3.1e-57, Sum P(3) = 3.1e-57
Identities = 25/61 (40%), Positives = 40/61 (65%)
Query: 6 DGKIDEDTL---ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDR 62
D K+ E L +T+R L H E+ +IG G V+++R+ESGA+I+I++G+CP+R
Sbjct: 2 DSKVSEGGLNVTLTIRLLMHGK----EVGSIIGKKGETVKKMREESGARINISEGSCPER 57
Query: 63 I 63
I
Sbjct: 58 I 58
Score = 114 (45.2 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 33/116 (28%), Positives = 56/116 (48%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQ 183
L ++L++ GS+IGK G +K +R+ SGA + ++ P ERIVT+ G D I +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGSCP---ERIVTITGPTDAIFK 70
Query: 184 AIYQICLVLIE-CTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEV 238
A I L E + V P T+ +++ Q +L G+ ++E+
Sbjct: 71 AFSMIALKFEEDINASMTNSTVTSKPPVTLR---LVVPASQCGSLIGKGGSKIKEI 123
Score = 80 (33.2 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 26/114 (22%), Positives = 51/114 (44%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGT--ESHKKMFHIQGCQEAVSL 345
V +V+ G +IGK GS++ EIR+ +GAQ+ + S ++ I G +A+
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAI-- 155
Query: 346 AQYLINMCIELQKNNTTNTSD--NPEPADLDAAISAFMTASVNSSLIEKPTPHP 397
Q + +C+ + ++ + P+PA + ++ + PHP
Sbjct: 156 IQCVKQICVVMLESPPKGATIPYRPKPASAPIIFAGGQAFTIQG---QYAIPHP 206
Score = 59 (25.8 bits), Expect = 6.2e-10, Sum P(2) = 6.2e-10
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPD 61
V ++ LIG GG ++ +R+ +GA++ + P+
Sbjct: 104 VPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPN 140
Score = 38 (18.4 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 377 ISAFMTASVNSSLIEKPTPHPGSMVTLGGLSELLANIAASNVKSTVQTTGA 427
I+A MT NS++ KP +V L+ S +K ++TGA
Sbjct: 83 INASMT---NSTVTSKPPVTLRLVVPASQCGSLIGK-GGSKIKEIRESTGA 129
>RGD|1307430 [details] [associations]
symbol:Pcbp3 "poly(rC) binding protein 3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0005829 "cytosol" evidence=IEA;ISO]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307430 GO:GO:0003723
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 UniGene:Rn.107537
EMBL:BC079196 IPI:IPI00464574 RefSeq:NP_001011945.1 SMR:Q6AY48
IntAct:Q6AY48 MINT:MINT-7138861 Ensembl:ENSRNOT00000001675
GeneID:294336 KEGG:rno:294336 NextBio:638024 Genevestigator:Q6AY48
Uniprot:Q6AY48
Length = 319
Score = 353 (129.3 bits), Expect = 1.7e-56, Sum P(3) = 1.7e-56
Identities = 75/154 (48%), Positives = 99/154 (64%)
Query: 83 PGHTLWVTS-VDNVCTAYNFMCRSLEDYHINR-NRMENCSPQPLQLKLVIPATHCGSLIG 140
P + +T D + A+ + E+ IN + S P+ L+LV+PA+ CGSLIG
Sbjct: 55 PERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIG 114
Query: 141 KGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVV 200
KGG KIK+IR+ +GA VQVA DMLP STER VT+ G PD I Q + QIC+V++E
Sbjct: 115 KGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESP---P 171
Query: 201 KGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVP 234
KGA IPY PK + PVI +GGQAYT+ G+YA+P
Sbjct: 172 KGATIPYRPKPAST-PVIFAGGQAYTIQGQYAIP 204
Score = 149 (57.5 bits), Expect = 1.7e-56, Sum P(3) = 1.7e-56
Identities = 32/73 (43%), Positives = 45/73 (61%)
Query: 280 GKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQG 338
G D E+ + +D+ GC+IG+ G+++ EIRQ+SGAQI I TE S ++ I G
Sbjct: 234 GLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITG 293
Query: 339 CQEAVSLAQYLIN 351
+SLAQYLIN
Sbjct: 294 TPANISLAQYLIN 306
Score = 116 (45.9 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 28/71 (39%), Positives = 41/71 (57%)
Query: 118 NCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGN 177
+ SP +L IP G +IG+ G KI +IR +SGA +++A+ S+ER +T+ G
Sbjct: 236 DASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIAN-ATEGSSERQITITGT 294
Query: 178 PDTISQAIYQI 188
P IS A Y I
Sbjct: 295 PANISLAQYLI 305
Score = 109 (43.4 bits), Expect = 1.7e-56, Sum P(3) = 1.7e-56
Identities = 24/61 (39%), Positives = 39/61 (63%)
Query: 6 DGKIDEDTL---ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDR 62
+ K+ E L +T+R L H E+ +IG G V+++R+ESGA+I+I++G CP+R
Sbjct: 2 ESKVSEGGLNVTLTIRLLMHGK----EVGSIIGKKGETVKKMREESGARINISEGNCPER 57
Query: 63 I 63
I
Sbjct: 58 I 58
Score = 104 (41.7 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 31/116 (26%), Positives = 57/116 (49%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQ 183
L ++L++ GS+IGK G +K +R+ SGA + ++ P ERIVT+ G D I +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCP---ERIVTITGPTDAIFK 70
Query: 184 AIYQICLVLIECTLQVVKGAVIPYEPK-TMNAGPVILSGGQAYTLHGEYAVPVQEV 238
A I E + + + +P T+ +++ Q +L G+ ++E+
Sbjct: 71 AFAMIAYKFEEDIINSMSNSPATSKPPVTLR---LVVPASQCGSLIGKGGSKIKEI 123
Score = 86 (35.3 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 28/124 (22%), Positives = 55/124 (44%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGT--ESHKKMFHIQGCQEAVSL 345
V +V+ G +IGK GS++ EIR+ +GAQ+ + S ++ I G +A+
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAI-- 155
Query: 346 AQYLINMCIELQKNNTTNTSD--NPEPADLDAAISAFMTASVNSSLIEKPTPHPGSMVTL 403
Q + +C+ + ++ + P+PA + ++ + PHP + L
Sbjct: 156 IQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYTIQG---QYAIPHPDQLTKL 212
Query: 404 GGLS 407
L+
Sbjct: 213 HQLA 216
Score = 59 (25.8 bits), Expect = 6.2e-10, Sum P(2) = 6.2e-10
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPD 61
V ++ LIG GG ++ +R+ +GA++ + P+
Sbjct: 104 VPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPN 140
>UNIPROTKB|B4DXP5 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HOGENOM:HOG000182823 HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K
UniGene:Hs.546271 HGNC:HGNC:8648 ChiTaRS:PCBP2 EMBL:AK302067
IPI:IPI00900327 SMR:B4DXP5 STRING:B4DXP5 Ensembl:ENST00000552819
UCSC:uc001sdf.4 Uniprot:B4DXP5
Length = 322
Score = 348 (127.6 bits), Expect = 1.5e-55, Sum P(3) = 1.5e-55
Identities = 68/129 (52%), Positives = 90/129 (69%)
Query: 107 EDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPM 166
ED + S P+ L+LV+PA+ CGSLIGKGGCKIK+IR+ +GA VQVA DMLP
Sbjct: 81 EDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN 140
Query: 167 STERIVTVHGNPDTISQAIYQICLVLIECTLQVV-KGAVIPYEPKTMNAGPVILSGGQAY 225
STER +T+ G P +I + + QIC+V++E Q KG IPY PK ++ PVI +GGQAY
Sbjct: 141 STERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPKP-SSSPVIFAGGQAY 199
Query: 226 TLHGEYAVP 234
T+ G+YA+P
Sbjct: 200 TIQGQYAIP 208
Score = 149 (57.5 bits), Expect = 1.5e-55, Sum P(3) = 1.5e-55
Identities = 32/76 (42%), Positives = 46/76 (60%)
Query: 278 SGGKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHI 336
S G D E+ + +D+ GC+IG+ G+++ EIRQ+SGAQI I E S + I
Sbjct: 235 SAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTI 294
Query: 337 QGCQEAVSLAQYLINM 352
G ++SLAQYLIN+
Sbjct: 295 TGSAASISLAQYLINV 310
Score = 115 (45.5 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 28/71 (39%), Positives = 43/71 (60%)
Query: 118 NCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGN 177
+ S Q +L IP G +IG+ G KI +IR +SGA +++A+ + ST+R VT+ G+
Sbjct: 239 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV-EGSTDRQVTITGS 297
Query: 178 PDTISQAIYQI 188
+IS A Y I
Sbjct: 298 AASISLAQYLI 308
Score = 105 (42.0 bits), Expect = 1.5e-55, Sum P(3) = 1.5e-55
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 15 ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
+T+R L H E+ +IG G V+++R+ESGA+I+I++G CP+RI
Sbjct: 14 LTIRLLMHGK----EVGSIIGKKGESVKKMREESGARINISEGNCPERI 58
Score = 98 (39.6 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 30/116 (25%), Positives = 56/116 (48%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQ 183
L ++L++ GS+IGK G +K +R+ SGA + ++ P ERI+T+ G + I +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCP---ERIITLAGPTNAIFK 70
Query: 184 AIYQICLVLIE-CTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEV 238
A I L E + + P T+ +++ Q +L G+ ++E+
Sbjct: 71 AFAMIIDKLEEDISSSMTNSTAASRPPVTLR---LVVPASQCGSLIGKGGCKIKEI 123
Score = 69 (29.3 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPD 61
V ++ LIG GGC ++ +R+ +GA++ + P+
Sbjct: 104 VPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN 140
Score = 67 (28.6 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI 323
V +V+ G +IGK G ++ EIR+ +GAQ+ +
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
>MGI|MGI:1890470 [details] [associations]
symbol:Pcbp3 "poly(rC) binding protein 3" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005829 "cytosol"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:1890470 GO:GO:0005829 GO:GO:0005739
GO:GO:0005634 GO:GO:0003677 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 OMA:FWAPSVL
OrthoDB:EOG4XH00F ChiTaRS:PCBP3 EMBL:AF176327 EMBL:AK034811
EMBL:AK079564 IPI:IPI00411074 IPI:IPI00411075 RefSeq:NP_067543.2
UniGene:Mm.272803 ProteinModelPortal:P57722 SMR:P57722
STRING:P57722 PhosphoSite:P57722 PaxDb:P57722 PRIDE:P57722
Ensembl:ENSMUST00000001148 Ensembl:ENSMUST00000105411
Ensembl:ENSMUST00000168465 GeneID:59093 KEGG:mmu:59093
UCSC:uc007fuz.2 UCSC:uc007fva.2 InParanoid:P57722 NextBio:314746
Bgee:P57722 CleanEx:MM_PCBP3 Genevestigator:P57722
GermOnline:ENSMUSG00000001120 Uniprot:P57722
Length = 371
Score = 475 (172.3 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
Identities = 113/279 (40%), Positives = 156/279 (55%)
Query: 83 PGHTLWVTS-VDNVCTAYNFMCRSLEDYHINR-NRMENCSPQPLQLKLVIPATHCGSLIG 140
P + +T D + A+ + E+ IN + S P+ L+LV+PA+ CGSLIG
Sbjct: 87 PERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIG 146
Query: 141 KGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVV 200
KGG KIK+IR+ +GA VQVA DMLP STER VT+ G PD I Q + QIC+V++E
Sbjct: 147 KGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESP---P 203
Query: 201 KGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVP-------VQEVAGKKQPHPLAGLAVL 253
KGA IPY PK + PVI +GGQAYT+ G+YA+P + ++A ++ P P G
Sbjct: 204 KGATIPYRPKPAST-PVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNP 262
Query: 254 GIEGIXXXXXXXXXXXXXXXXRVKSGGKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEI 313
G +S G D E+ + +D+ GC+IG+ G+++ EI
Sbjct: 263 AFPGEKLPLHSSEEAQNLMG---QSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEI 319
Query: 314 RQISGAQINIHTGTE-SHKKMFHIQGCQEAVSLAQYLIN 351
RQ+SGAQI I TE S ++ I G +SLAQYLIN
Sbjct: 320 RQMSGAQIKIANATEGSSERQITITGTPANISLAQYLIN 358
Score = 112 (44.5 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
Identities = 25/64 (39%), Positives = 40/64 (62%)
Query: 3 GNGDGKIDEDTL---ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGAC 59
G + K+ E L +T+R L H E+ +IG G V+++R+ESGA+I+I++G C
Sbjct: 31 GKMESKVSEGGLNVTLTIRLLMHGK----EVGSIIGKKGETVKKMREESGARINISEGNC 86
Query: 60 PDRI 63
P+RI
Sbjct: 87 PERI 90
>UNIPROTKB|D4A1P3 [details] [associations]
symbol:Pcbp3 "Protein Pcbp3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1307430 GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
EMBL:CH473988 OrthoDB:EOG4XH00F IPI:IPI00558998 UniGene:Rn.107537
Ensembl:ENSRNOT00000042120 Uniprot:D4A1P3
Length = 371
Score = 475 (172.3 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
Identities = 113/279 (40%), Positives = 156/279 (55%)
Query: 83 PGHTLWVTS-VDNVCTAYNFMCRSLEDYHINR-NRMENCSPQPLQLKLVIPATHCGSLIG 140
P + +T D + A+ + E+ IN + S P+ L+LV+PA+ CGSLIG
Sbjct: 87 PERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIG 146
Query: 141 KGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVV 200
KGG KIK+IR+ +GA VQVA DMLP STER VT+ G PD I Q + QIC+V++E
Sbjct: 147 KGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESP---P 203
Query: 201 KGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVP-------VQEVAGKKQPHPLAGLAVL 253
KGA IPY PK + PVI +GGQAYT+ G+YA+P + ++A ++ P P G
Sbjct: 204 KGATIPYRPKPAST-PVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNP 262
Query: 254 GIEGIXXXXXXXXXXXXXXXXRVKSGGKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEI 313
G +S G D E+ + +D+ GC+IG+ G+++ EI
Sbjct: 263 AFPGEKLPLHSSEEAQNLMG---QSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEI 319
Query: 314 RQISGAQINIHTGTE-SHKKMFHIQGCQEAVSLAQYLIN 351
RQ+SGAQI I TE S ++ I G +SLAQYLIN
Sbjct: 320 RQMSGAQIKIANATEGSSERQITITGTPANISLAQYLIN 358
Score = 112 (44.5 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
Identities = 25/64 (39%), Positives = 40/64 (62%)
Query: 3 GNGDGKIDEDTL---ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGAC 59
G + K+ E L +T+R L H E+ +IG G V+++R+ESGA+I+I++G C
Sbjct: 31 GKMESKVSEGGLNVTLTIRLLMHGK----EVGSIIGKKGETVKKMREESGARINISEGNC 86
Query: 60 PDRI 63
P+RI
Sbjct: 87 PERI 90
>UNIPROTKB|G3V0E8 [details] [associations]
symbol:PCBP2 "Poly(RC) binding protein 2, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CH471054 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 RefSeq:NP_001122386.1 UniGene:Hs.546271 GeneID:5094
KEGG:hsa:5094 CTD:5094 HGNC:HGNC:8648 KO:K13162 ChiTaRS:PCBP2
GenomeRNAi:5094 NextBio:19648 ProteinModelPortal:G3V0E8 SMR:G3V0E8
PRIDE:G3V0E8 Ensembl:ENST00000437231 Ensembl:ENST00000455667
ArrayExpress:G3V0E8 Bgee:G3V0E8 Uniprot:G3V0E8
Length = 318
Score = 343 (125.8 bits), Expect = 4.9e-55, Sum P(3) = 4.9e-55
Identities = 67/128 (52%), Positives = 89/128 (69%)
Query: 107 EDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPM 166
ED + S P+ L+LV+PA+ CGSLIGKGGCKIK+IR+ +GA VQVA DMLP
Sbjct: 81 EDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN 140
Query: 167 STERIVTVHGNPDTISQAIYQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSGGQAYT 226
STER +T+ G P +I + + QIC+V++E KG IPY PK ++ PVI +GGQAYT
Sbjct: 141 STERAITIAGIPQSIIECVKQICVVMLESP---PKGVTIPYRPKP-SSSPVIFAGGQAYT 196
Query: 227 LHGEYAVP 234
+ G+YA+P
Sbjct: 197 IQGQYAIP 204
Score = 149 (57.5 bits), Expect = 4.9e-55, Sum P(3) = 4.9e-55
Identities = 32/76 (42%), Positives = 46/76 (60%)
Query: 278 SGGKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHI 336
S G D E+ + +D+ GC+IG+ G+++ EIRQ+SGAQI I E S + I
Sbjct: 231 SAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTI 290
Query: 337 QGCQEAVSLAQYLINM 352
G ++SLAQYLIN+
Sbjct: 291 TGSAASISLAQYLINV 306
Score = 115 (45.5 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 28/71 (39%), Positives = 43/71 (60%)
Query: 118 NCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGN 177
+ S Q +L IP G +IG+ G KI +IR +SGA +++A+ + ST+R VT+ G+
Sbjct: 235 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV-EGSTDRQVTITGS 293
Query: 178 PDTISQAIYQI 188
+IS A Y I
Sbjct: 294 AASISLAQYLI 304
Score = 105 (42.0 bits), Expect = 4.9e-55, Sum P(3) = 4.9e-55
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 15 ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
+T+R L H E+ +IG G V+++R+ESGA+I+I++G CP+RI
Sbjct: 14 LTIRLLMHGK----EVGSIIGKKGESVKKMREESGARINISEGNCPERI 58
Score = 98 (39.6 bits), Expect = 5.6e-14, Sum P(2) = 5.6e-14
Identities = 30/116 (25%), Positives = 56/116 (48%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQ 183
L ++L++ GS+IGK G +K +R+ SGA + ++ P ERI+T+ G + I +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCP---ERIITLAGPTNAIFK 70
Query: 184 AIYQICLVLIE-CTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEV 238
A I L E + + P T+ +++ Q +L G+ ++E+
Sbjct: 71 AFAMIIDKLEEDISSSMTNSTAASRPPVTLR---LVVPASQCGSLIGKGGCKIKEI 123
Score = 69 (29.3 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPD 61
V ++ LIG GGC ++ +R+ +GA++ + P+
Sbjct: 104 VPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN 140
Score = 67 (28.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI 323
V +V+ G +IGK G ++ EIR+ +GAQ+ +
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
>UNIPROTKB|E2QUE1 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OMA:FWAPSVL EMBL:AAEX03016660 Ensembl:ENSCAFT00000018912
Uniprot:E2QUE1
Length = 371
Score = 475 (172.3 bits), Expect = 6.9e-55, Sum P(2) = 6.9e-55
Identities = 113/279 (40%), Positives = 156/279 (55%)
Query: 83 PGHTLWVTS-VDNVCTAYNFMCRSLEDYHINR-NRMENCSPQPLQLKLVIPATHCGSLIG 140
P + +T D + A+ + E+ IN + S P+ L+LV+PA+ CGSLIG
Sbjct: 87 PERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIG 146
Query: 141 KGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVV 200
KGG KIK+IR+ +GA VQVA DMLP STER VT+ G PD I Q + QIC+V++E
Sbjct: 147 KGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESP---P 203
Query: 201 KGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVP-------VQEVAGKKQPHPLAGLAVL 253
KGA IPY PK + PVI +GGQAYT+ G+YA+P + ++A ++ P P G
Sbjct: 204 KGATIPYRPKPAST-PVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNP 262
Query: 254 GIEGIXXXXXXXXXXXXXXXXRVKSGGKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEI 313
G +S G D E+ + +D+ GC+IG+ G+++ EI
Sbjct: 263 AFPGEKLPLHSSEEAQNLMG---QSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEI 319
Query: 314 RQISGAQINIHTGTE-SHKKMFHIQGCQEAVSLAQYLIN 351
RQ+SGAQI I TE S ++ I G +SLAQYLIN
Sbjct: 320 RQMSGAQIKIANATEGSSERQITITGTPANISLAQYLIN 358
Score = 109 (43.4 bits), Expect = 6.9e-55, Sum P(2) = 6.9e-55
Identities = 24/61 (39%), Positives = 39/61 (63%)
Query: 6 DGKIDEDTL---ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDR 62
+ K+ E L +T+R L H E+ +IG G V+++R+ESGA+I+I++G CP+R
Sbjct: 34 ESKVSEGGLNVTLTIRLLMHGK----EVGSIIGKKGETVKKMREESGARINISEGNCPER 89
Query: 63 I 63
I
Sbjct: 90 I 90
>UNIPROTKB|P57721 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0016071 "mRNA metabolic process" evidence=NAS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0016071
GO:GO:0003677 GO:GO:0003723 GO:GO:0030529 eggNOG:NOG315872
HOVERGEN:HBG053520 KO:K13162 EMBL:AF176329 EMBL:AK094301
EMBL:AJ011931 EMBL:AJ239328 EMBL:AL133492 EMBL:AL133493
EMBL:AL592528 EMBL:BC012061 IPI:IPI00027970 IPI:IPI00101278
IPI:IPI00167750 IPI:IPI00410586 IPI:IPI00410587
RefSeq:NP_001123613.1 RefSeq:NP_065389.2 UniGene:Hs.474049
ProteinModelPortal:P57721 SMR:P57721 IntAct:P57721
MINT:MINT-2862183 STRING:P57721 PhosphoSite:P57721 DMDM:296439262
PaxDb:P57721 PRIDE:P57721 Ensembl:ENST00000400308
Ensembl:ENST00000400309 Ensembl:ENST00000400310
Ensembl:ENST00000400314 Ensembl:ENST00000449640 GeneID:54039
KEGG:hsa:54039 UCSC:uc002zhp.2 UCSC:uc002zhq.2 UCSC:uc002zhs.2
CTD:54039 GeneCards:GC21P047063 HGNC:HGNC:8651 HPA:HPA030247
MIM:608502 neXtProt:NX_P57721 PharmGKB:PA32990 OMA:FWAPSVL
OrthoDB:EOG4XH00F ChiTaRS:PCBP3 GenomeRNAi:54039 NextBio:56330
ArrayExpress:P57721 Bgee:P57721 CleanEx:HS_PCBP3
Genevestigator:P57721 GermOnline:ENSG00000183570 Uniprot:P57721
Length = 371
Score = 475 (172.3 bits), Expect = 6.9e-55, Sum P(2) = 6.9e-55
Identities = 113/279 (40%), Positives = 156/279 (55%)
Query: 83 PGHTLWVTS-VDNVCTAYNFMCRSLEDYHINR-NRMENCSPQPLQLKLVIPATHCGSLIG 140
P + +T D + A+ + E+ IN + S P+ L+LV+PA+ CGSLIG
Sbjct: 87 PERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIG 146
Query: 141 KGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVV 200
KGG KIK+IR+ +GA VQVA DMLP STER VT+ G PD I Q + QIC+V++E
Sbjct: 147 KGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESP---P 203
Query: 201 KGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVP-------VQEVAGKKQPHPLAGLAVL 253
KGA IPY PK + PVI +GGQAYT+ G+YA+P + ++A ++ P P G
Sbjct: 204 KGATIPYRPKPAST-PVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNP 262
Query: 254 GIEGIXXXXXXXXXXXXXXXXRVKSGGKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEI 313
G +S G D E+ + +D+ GC+IG+ G+++ EI
Sbjct: 263 AFPGEKLPLHSSEEAQNLMG---QSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEI 319
Query: 314 RQISGAQINIHTGTE-SHKKMFHIQGCQEAVSLAQYLIN 351
RQ+SGAQI I TE S ++ I G +SLAQYLIN
Sbjct: 320 RQMSGAQIKIANATEGSSERQITITGTPANISLAQYLIN 358
Score = 109 (43.4 bits), Expect = 6.9e-55, Sum P(2) = 6.9e-55
Identities = 24/61 (39%), Positives = 39/61 (63%)
Query: 6 DGKIDEDTL---ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDR 62
+ K+ E L +T+R L H E+ +IG G V+++R+ESGA+I+I++G CP+R
Sbjct: 34 ESKVSEGGLNVTLTIRLLMHGK----EVGSIIGKKGETVKKMREESGARINISEGNCPER 89
Query: 63 I 63
I
Sbjct: 90 I 90
>UNIPROTKB|P57723 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0003677 GO:GO:0003723
GO:GO:0030529 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:57060 OMA:MSSSDAG
OrthoDB:EOG48D0VR EMBL:AF176330 EMBL:AK023993 EMBL:BC003008
EMBL:BC004153 EMBL:BC017098 IPI:IPI00027973 IPI:IPI00386254
RefSeq:NP_001167571.1 RefSeq:NP_065151.2 RefSeq:NP_127501.1
RefSeq:NP_127503.1 UniGene:Hs.20930 ProteinModelPortal:P57723
SMR:P57723 IntAct:P57723 MINT:MINT-2873350 STRING:P57723
PhosphoSite:P57723 DMDM:12230429 PRIDE:P57723
Ensembl:ENST00000322099 Ensembl:ENST00000355852
Ensembl:ENST00000428823 Ensembl:ENST00000461554
Ensembl:ENST00000484633 GeneID:57060 KEGG:hsa:57060 UCSC:uc003dce.2
UCSC:uc003dck.2 GeneCards:GC03M051991 HGNC:HGNC:8652 MIM:608503
neXtProt:NX_P57723 PharmGKB:PA32991 GenomeRNAi:57060 NextBio:62848
ArrayExpress:P57723 Bgee:P57723 CleanEx:HS_PCBP4
Genevestigator:P57723 GermOnline:ENSG00000090097 Uniprot:P57723
Length = 403
Score = 301 (111.0 bits), Expect = 1.0e-54, Sum P(3) = 1.0e-54
Identities = 66/127 (51%), Positives = 85/127 (66%)
Query: 118 NCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGN 177
N S P+ L+LVIPA+ CGSLIGK G KIK+IR+ +GA VQVA D+LP STER VTV G
Sbjct: 96 NVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGV 155
Query: 178 PDTISQAIYQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEY-AVPVQ 236
PD I + QIC V++E KGA IPY P +++ G V+LS Q +++ G+Y AV
Sbjct: 156 PDAIILCVRQICAVILESP---PKGATIPYHP-SLSLGTVLLSANQGFSVQGQYGAVTPA 211
Query: 237 EVAGKKQ 243
EV +Q
Sbjct: 212 EVTKLQQ 218
Score = 182 (69.1 bits), Expect = 1.0e-54, Sum P(3) = 1.0e-54
Identities = 47/131 (35%), Positives = 70/131 (53%)
Query: 280 GKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQG 338
G D G E ++ +D+ GCVIG+ GS++ EIRQ+SGA I I E + ++ I G
Sbjct: 234 GLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITG 293
Query: 339 CQEAVSLAQYLINMCIELQKNNTTNTSDNPEPADLDAAISAFMTASVNSSLIEKPTPHPG 398
+++LAQYLI C+E K+ + T + PADL A S +TA + TP+
Sbjct: 294 SPVSIALAQYLITACLETAKSTSGGTPSSA-PADLPAPFSPPLTALPTAPPGLLGTPYAI 352
Query: 399 SMVTLGGLSEL 409
S+ GL +
Sbjct: 353 SLSNFIGLKPM 363
Score = 111 (44.1 bits), Expect = 1.0e-54, Sum P(3) = 1.0e-54
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 1 MDGNGDGKIDEDTL---ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDG 57
M G+ G +E L +T+R L H E+ +IG G V+R+R++S A+I+I++G
Sbjct: 1 MSGSDGGLEEEPELSITLTLRMLMHGK----EVGSIIGKKGETVKRIREQSSARITISEG 56
Query: 58 ACPDRI 63
+CP+RI
Sbjct: 57 SCPERI 62
Score = 106 (42.4 bits), Expect = 3.3e-18, Sum P(2) = 3.3e-18
Identities = 31/117 (26%), Positives = 55/117 (47%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQ 183
L L++++ GS+IGK G +K IR+ S A + ++ P ERI T+ G+ +
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCP---ERITTITGSTAAVFH 74
Query: 184 AIYQICLVLIE--CTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEV 238
A+ I L E C G + P T+ +++ Q +L G+ ++E+
Sbjct: 75 AVSMIAFKLDEDLCAAPA-NGGNVSRPPVTLR---LVIPASQCGSLIGKAGTKIKEI 127
Score = 104 (41.7 bits), Expect = 8.2e-10, Sum P(2) = 8.2e-10
Identities = 35/126 (27%), Positives = 57/126 (45%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIY 186
+ ++P G +IG+ G KI +IR +SGA++++ + + ER VT+ G+P +I+ A Y
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQA-EGAGERHVTITGSPVSIALAQY 303
Query: 187 QI--CLVLIECTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEVAGKKQP 244
I CL + T + P + L L YA+ + G K P
Sbjct: 304 LITACLETAKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGLK-P 362
Query: 245 HPLAGL 250
P L
Sbjct: 363 MPFLAL 368
Score = 77 (32.2 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGT--ESHKKMFHIQGCQEAVSL 345
V +V+ G +IGKAG+++ EIR+ +GAQ+ + S ++ + G +A+ L
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 161
Score = 53 (23.7 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 14/58 (24%), Positives = 29/58 (50%)
Query: 4 NGDGKIDEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPD 61
NG G + +T+R + +S + LIG G ++ +R+ +GA++ + P+
Sbjct: 93 NG-GNVSRPP-VTLRLVIPAS----QCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPN 144
>UNIPROTKB|E2RCH9 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AAEX03016660 Ensembl:ENSCAFT00000010991 Uniprot:E2RCH9
Length = 370
Score = 472 (171.2 bits), Expect = 1.4e-54, Sum P(2) = 1.4e-54
Identities = 112/279 (40%), Positives = 154/279 (55%)
Query: 83 PGHTLWVTS-VDNVCTAYNFMCRSLEDYHINR-NRMENCSPQPLQLKLVIPATHCGSLIG 140
P + +T D + A+ + E+ IN + S P+ L+LV+PA+ CGSLIG
Sbjct: 87 PERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIG 146
Query: 141 KGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVV 200
KGG KIK+IR+ +GA VQVA DMLP STER VT+ G PD I Q + QIC+V++E
Sbjct: 147 KGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESP---P 203
Query: 201 KGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVP-------VQEVAGKKQPHPLAGLAVL 253
KGA IPY PK + PVI +GGQAYT+ G+YA+P + ++A ++ P P G
Sbjct: 204 KGATIPYRPKPAST-PVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNP 262
Query: 254 GIEGIXXXXXXXXXXXXXXXXRVKSGGKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEI 313
G G D E+ + +D+ GC+IG+ G+++ EI
Sbjct: 263 AFPGTYPAALSDLLSSHLGTL----SGLDASPPASTHELTIPNDLIGCIIGRQGTKINEI 318
Query: 314 RQISGAQINIHTGTE-SHKKMFHIQGCQEAVSLAQYLIN 351
RQ+SGAQI I TE S ++ I G +SLAQYLIN
Sbjct: 319 RQMSGAQIKIANATEGSSERQITITGTPANISLAQYLIN 357
Score = 109 (43.4 bits), Expect = 1.4e-54, Sum P(2) = 1.4e-54
Identities = 24/61 (39%), Positives = 39/61 (63%)
Query: 6 DGKIDEDTL---ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDR 62
+ K+ E L +T+R L H E+ +IG G V+++R+ESGA+I+I++G CP+R
Sbjct: 34 ESKVSEGGLNVTLTIRLLMHGK----EVGSIIGKKGETVKKMREESGARINISEGNCPER 89
Query: 63 I 63
I
Sbjct: 90 I 90
>ZFIN|ZDB-GENE-050522-157 [details] [associations]
symbol:pcbp3 "poly(rC) binding protein 3"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-050522-157 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:BX247868 HOVERGEN:HBG053520 IPI:IPI00868273 UniGene:Dr.159961
SMR:A8WHQ1 Ensembl:ENSDART00000148317 Uniprot:A8WHQ1
Length = 350
Score = 302 (111.4 bits), Expect = 2.4e-54, Sum P(4) = 2.4e-54
Identities = 67/143 (46%), Positives = 89/143 (62%)
Query: 83 PGHTLWVTS-VDNVCTAYNFMCRSLEDYHINR-NRMENCSPQPLQLKLVIPATHCGSLIG 140
P + +T D + A+ + E+ IN + S P+ L+LV+PA+ CGSLIG
Sbjct: 57 PERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIG 116
Query: 141 KGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVV 200
KGG KIK++R+ +GA VQVA DMLP STER VT+ G P+ I Q + QIC+V++E
Sbjct: 117 KGGSKIKEMRESTGAQVQVAGDMLPNSTERAVTISGTPEAIIQCVKQICVVMLESP---P 173
Query: 201 KGAVIPYEPKTMNAGPVILSGGQ 223
KGA IPY PK + PVI SGGQ
Sbjct: 174 KGATIPYRPKPAST-PVIFSGGQ 195
Score = 143 (55.4 bits), Expect = 2.4e-54, Sum P(4) = 2.4e-54
Identities = 31/73 (42%), Positives = 44/73 (60%)
Query: 280 GKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQG 338
G D E+ + +D+ GC+IG+ G+++ EIRQ+SGAQI I E S ++ I G
Sbjct: 259 GLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSERQITITG 318
Query: 339 CQEAVSLAQYLIN 351
+SLAQYLIN
Sbjct: 319 TPANISLAQYLIN 331
Score = 121 (47.7 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 29/71 (40%), Positives = 42/71 (59%)
Query: 118 NCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGN 177
+ SP +L IP G +IG+ G KI +IR +SGA +++A+ M S+ER +T+ G
Sbjct: 261 DASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAM-EGSSERQITITGT 319
Query: 178 PDTISQAIYQI 188
P IS A Y I
Sbjct: 320 PANISLAQYLI 330
Score = 106 (42.4 bits), Expect = 2.4e-54, Sum P(4) = 2.4e-54
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 15 ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
+T+R L H E+ +IG G V+++R+ESGA+I+I++G CP+RI
Sbjct: 16 LTIRLLMHGK----EVGSIIGKKGETVKKMREESGARINISEGNCPERI 60
Score = 102 (41.0 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 31/116 (26%), Positives = 57/116 (49%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQ 183
L ++L++ GS+IGK G +K +R+ SGA + ++ P ERIVT+ G D I +
Sbjct: 16 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCP---ERIVTITGPTDAIFK 72
Query: 184 AIYQICLVLIECTLQVVKGAVIPYEPK-TMNAGPVILSGGQAYTLHGEYAVPVQEV 238
A I E + + + +P T+ +++ Q +L G+ ++E+
Sbjct: 73 AFAMIAYKFEEDIINSMSNSPATSKPPVTLR---LVVPASQCGSLIGKGGSKIKEM 125
Score = 78 (32.5 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 24/95 (25%), Positives = 45/95 (47%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGT--ESHKKMFHIQGCQEAVSL 345
V +V+ G +IGK GS++ E+R+ +GAQ+ + S ++ I G EA+
Sbjct: 100 VTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDMLPNSTERAVTISGTPEAI-- 157
Query: 346 AQYLINMCIELQKNNTTNTSD--NPEPADLDAAIS 378
Q + +C+ + ++ + P+PA S
Sbjct: 158 IQCVKQICVVMLESPPKGATIPYRPKPASTPVIFS 192
Score = 59 (25.8 bits), Expect = 2.7e-10, Sum P(3) = 2.7e-10
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPD 61
V ++ LIG GG ++ +R+ +GA++ + P+
Sbjct: 106 VPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDMLPN 142
Score = 47 (21.6 bits), Expect = 2.4e-54, Sum P(4) = 2.4e-54
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 224 AYTLHGEYAVP 234
AYT+ G+YA+P
Sbjct: 219 AYTIQGQYAIP 229
>UNIPROTKB|E2RG64 [details] [associations]
symbol:PCBP4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 KO:K13162
CTD:57060 OMA:MSSSDAG EMBL:AAEX03012201 RefSeq:XP_849987.1
Ensembl:ENSCAFT00000015946 GeneID:476603 KEGG:cfa:476603
NextBio:20852230 Uniprot:E2RG64
Length = 403
Score = 304 (112.1 bits), Expect = 3.3e-54, Sum P(3) = 3.3e-54
Identities = 70/136 (51%), Positives = 90/136 (66%)
Query: 118 NCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGN 177
N S P+ L+LVIPA+ CGSLIGK G KIK+IR+ +GA VQVA D+LP STER VTV G
Sbjct: 96 NVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGV 155
Query: 178 PDTISQAIYQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEY-AVPVQ 236
PD I + QIC V++E KGA IPY P +++ G V+LS Q +++ G+Y AV
Sbjct: 156 PDAIILCVRQICAVILESP---PKGATIPYHP-SLSLGTVLLSANQGFSVQGQYGAVTPA 211
Query: 237 EVAGKKQPHPLAGLAV 252
EV +Q L+G AV
Sbjct: 212 EVTKLQQ---LSGHAV 224
Score = 175 (66.7 bits), Expect = 3.3e-54, Sum P(3) = 3.3e-54
Identities = 46/128 (35%), Positives = 68/128 (53%)
Query: 280 GKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQG 338
G D G E ++ +D+ GCVIG+ GS++ EIRQ+SGA I I E + ++ I G
Sbjct: 234 GLDPGAQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITG 293
Query: 339 CQEAVSLAQYLINMCIELQKNNTTNTSDNPEPADLDAAISAFMTASVNSSLIEKPTPHPG 398
+++LAQYLI C+E K+ + T + P DL A S +TA + TP+
Sbjct: 294 SPVSIALAQYLITACLETAKSTSGGTPGSA-PTDLPAPFSPPLTALPTAPPGLLGTPYAI 352
Query: 399 SMVTLGGL 406
S+ GL
Sbjct: 353 SLSNFIGL 360
Score = 110 (43.8 bits), Expect = 3.3e-54, Sum P(3) = 3.3e-54
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 1 MDGNGDGKIDEDTL---ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDG 57
M G+ G +E L +T+R L H E+ +IG G V+R+R++S A+I+I++G
Sbjct: 1 MSGSDAGLEEEPELSITLTLRMLMHGK----EVGSIIGKKGETVKRIREQSSARITISEG 56
Query: 58 ACPDRI 63
+CP+RI
Sbjct: 57 SCPERI 62
Score = 109 (43.4 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 36/126 (28%), Positives = 58/126 (46%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIY 186
+ ++P G +IG+ G KI +IR +SGA++++ + + ER VT+ G+P +I+ A Y
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQA-EGAGERHVTITGSPVSIALAQY 303
Query: 187 QI--CLVLIECTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEVAGKKQP 244
I CL + T G+ P + L L YA+ + G K P
Sbjct: 304 LITACLETAKSTSGGTPGSAPTDLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGLK-P 362
Query: 245 HPLAGL 250
P L
Sbjct: 363 VPFLAL 368
Score = 106 (42.4 bits), Expect = 2.2e-17, Sum P(2) = 2.2e-17
Identities = 31/117 (26%), Positives = 55/117 (47%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQ 183
L L++++ GS+IGK G +K IR+ S A + ++ P ERI T+ G+ +
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCP---ERITTITGSTAAVFH 74
Query: 184 AIYQICLVLIE--CTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEV 238
A+ I L E C G + P T+ +++ Q +L G+ ++E+
Sbjct: 75 AVSMIAFKLDEDLCAAPA-NGGNVSRPPVTLR---LVIPASQCGSLIGKAGTKIKEI 127
Score = 77 (32.2 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGT--ESHKKMFHIQGCQEAVSL 345
V +V+ G +IGKAG+++ EIR+ +GAQ+ + S ++ + G +A+ L
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 161
Score = 53 (23.7 bits), Expect = 7.0e-12, Sum P(2) = 7.0e-12
Identities = 14/58 (24%), Positives = 29/58 (50%)
Query: 4 NGDGKIDEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPD 61
NG G + +T+R + +S + LIG G ++ +R+ +GA++ + P+
Sbjct: 93 NG-GNVSRPP-VTLRLVIPAS----QCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPN 144
>UNIPROTKB|I3LRN5 [details] [associations]
symbol:PCBP4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 OMA:MSSSDAG
EMBL:FP102591 Ensembl:ENSSSCT00000026653 Uniprot:I3LRN5
Length = 404
Score = 302 (111.4 bits), Expect = 3.3e-54, Sum P(3) = 3.3e-54
Identities = 70/136 (51%), Positives = 90/136 (66%)
Query: 118 NCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGN 177
N S P+ L+LVIPA+ CGSLIGK G KIK+IR+ +GA VQVA D+LP STER VTV G
Sbjct: 96 NVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGV 155
Query: 178 PDTISQAIYQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEY-AVPVQ 236
PD I + QIC V++E KGA IPY P +++ G V+LS Q +++ G+Y AV
Sbjct: 156 PDAIILCVRQICAVILESP---PKGATIPYHP-SLSLGTVLLSTNQGFSVQGQYGAVTPA 211
Query: 237 EVAGKKQPHPLAGLAV 252
EV +Q L+G AV
Sbjct: 212 EVTKLQQ---LSGHAV 224
Score = 177 (67.4 bits), Expect = 3.3e-54, Sum P(3) = 3.3e-54
Identities = 46/128 (35%), Positives = 68/128 (53%)
Query: 280 GKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQG 338
G D G E ++ +D+ GCVIG+ GS++ EIRQ+SGA I I E + ++ I G
Sbjct: 235 GLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITG 294
Query: 339 CQEAVSLAQYLINMCIELQKNNTTNTSDNPEPADLDAAISAFMTASVNSSLIEKPTPHPG 398
+++LAQYLI C+E K+ + T + P DL A S +TA + TP+
Sbjct: 295 SPVSIALAQYLITACLETAKSTSGGTPSSA-PTDLPAPFSPPLTALPTAPPGLLGTPYAI 353
Query: 399 SMVTLGGL 406
S+ GL
Sbjct: 354 SLSNFIGL 361
Score = 110 (43.8 bits), Expect = 3.3e-54, Sum P(3) = 3.3e-54
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 1 MDGNGDGKIDEDTL---ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDG 57
M G+ G +E L +T+R L H E+ +IG G V+R+R++S A+I+I++G
Sbjct: 1 MSGSDAGLEEEPELSITLTLRMLMHGK----EVGSIIGKKGETVKRIREQSSARITISEG 56
Query: 58 ACPDRI 63
+CP+RI
Sbjct: 57 SCPERI 62
Score = 106 (42.4 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 31/117 (26%), Positives = 55/117 (47%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQ 183
L L++++ GS+IGK G +K IR+ S A + ++ P ERI T+ G+ +
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCP---ERITTITGSTAAVFH 74
Query: 184 AIYQICLVLIE--CTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEV 238
A+ I L E C G + P T+ +++ Q +L G+ ++E+
Sbjct: 75 AVSMIAFKLDEDLCAAPA-NGGNVSRPPVTLR---LVIPASQCGSLIGKAGTKIKEI 127
Score = 103 (41.3 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 35/126 (27%), Positives = 57/126 (45%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIY 186
+ ++P G +IG+ G KI +IR +SGA++++ + + ER VT+ G+P +I+ A Y
Sbjct: 246 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQA-EGAGERHVTITGSPVSIALAQY 304
Query: 187 QI--CLVLIECTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEVAGKKQP 244
I CL + T + P + L L YA+ + G K P
Sbjct: 305 LITACLETAKSTSGGTPSSAPTDLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGLK-P 363
Query: 245 HPLAGL 250
P L
Sbjct: 364 VPFLAL 369
Score = 77 (32.2 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGT--ESHKKMFHIQGCQEAVSL 345
V +V+ G +IGKAG+++ EIR+ +GAQ+ + S ++ + G +A+ L
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 161
Score = 53 (23.7 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 14/58 (24%), Positives = 29/58 (50%)
Query: 4 NGDGKIDEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPD 61
NG G + +T+R + +S + LIG G ++ +R+ +GA++ + P+
Sbjct: 93 NG-GNVSRPP-VTLRLVIPAS----QCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPN 144
>ZFIN|ZDB-GENE-030131-563 [details] [associations]
symbol:pcbp2 "poly(rC) binding protein 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-030131-563 GO:GO:0003723 GeneTree:ENSGT00550000074311
HOGENOM:HOG000182823 HOVERGEN:HBG053520 CTD:5094 KO:K13162
OMA:CVVMLEL HSSP:Q9UNW9 EMBL:CR848672 EMBL:BC045508 EMBL:BC066603
EMBL:AY398394 IPI:IPI00495300 RefSeq:NP_957486.1 UniGene:Dr.76907
SMR:Q7ZVK5 Ensembl:ENSDART00000025885 GeneID:321844 KEGG:dre:321844
InParanoid:Q7ZVK5 NextBio:20807553 Uniprot:Q7ZVK5
Length = 318
Score = 341 (125.1 bits), Expect = 5.4e-54, Sum P(3) = 5.4e-54
Identities = 71/158 (44%), Positives = 103/158 (65%)
Query: 98 AYNFMCRSLE-DYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGAN 156
A++ + LE D + + S P+ L++V+PA+ CGSLIGKGGCKIK+IR+ +GA
Sbjct: 71 AFSMIIEKLEEDISSSMSNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQ 130
Query: 157 VQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVVKGAVIPYEPKTMNAGP 216
VQVA DMLP STER +T+ G P +I + + QIC+V++E KG IPY PK + P
Sbjct: 131 VQVAGDMLPNSTERAITIAGTPLSIIECVKQICVVMLESP---PKGVTIPYRPKP-SGSP 186
Query: 217 VILSGGQAYTLHGEYAVP------VQEVAGKKQPHPLA 248
VI +GGQAY + G++A+P + ++A ++ P PLA
Sbjct: 187 VIFAGGQAYAVQGQHAIPQPDLTKLHQLAMQQSPFPLA 224
Score = 141 (54.7 bits), Expect = 5.4e-54, Sum P(3) = 5.4e-54
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 278 SGGKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHI 336
+ G D E+ + +D+ GC+IG+ G+++ EIRQ+SGAQI I E S + I
Sbjct: 231 TAGMDASAQTGSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSSDRQVTI 290
Query: 337 QGCQEAVSLAQYLIN 351
G ++SLA+YLIN
Sbjct: 291 TGSPASISLAEYLIN 305
Score = 116 (45.9 bits), Expect = 7.7e-11, Sum P(2) = 7.7e-11
Identities = 28/71 (39%), Positives = 44/71 (61%)
Query: 118 NCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGN 177
+ S Q +L IP G +IG+ G KI +IR +SGA +++A+ + S++R VT+ G+
Sbjct: 235 DASAQTGSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV-EGSSDRQVTITGS 293
Query: 178 PDTISQAIYQI 188
P +IS A Y I
Sbjct: 294 PASISLAEYLI 304
Score = 105 (42.0 bits), Expect = 5.4e-54, Sum P(3) = 5.4e-54
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 15 ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
+T+R L H E+ +IG G V+++R+ESGA+I+I++G CP+RI
Sbjct: 14 LTIRLLMHGK----EVGSIIGKKGESVKKMREESGARINISEGNCPERI 58
Score = 97 (39.2 bits), Expect = 6.2e-13, Sum P(2) = 6.2e-13
Identities = 30/116 (25%), Positives = 56/116 (48%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQ 183
L ++L++ GS+IGK G +K +R+ SGA + ++ P ERI+T+ G I +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCP---ERIITLAGPTTAIFK 70
Query: 184 AIYQICLVLIECTLQVVKGAVIPYEPK-TMNAGPVILSGGQAYTLHGEYAVPVQEV 238
A I L E + + +P T+ +++ Q +L G+ ++E+
Sbjct: 71 AFSMIIEKLEEDISSSMSNSTATSKPPVTLR---IVVPASQCGSLIGKGGCKIKEI 123
Score = 69 (29.3 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPD 61
V ++ LIG GGC ++ +R+ +GA++ + P+
Sbjct: 104 VPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN 140
Score = 69 (29.3 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI 323
V IV+ G +IGK G ++ EIR+ +GAQ+ +
Sbjct: 98 VTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
>UNIPROTKB|E9PFP8 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
EMBL:AJ011931 EMBL:AJ239328 EMBL:AL133492 EMBL:AL133493
EMBL:AL592528 HGNC:HGNC:8651 ChiTaRS:PCBP3 IPI:IPI00550365
ProteinModelPortal:E9PFP8 SMR:E9PFP8 PRIDE:E9PFP8
Ensembl:ENST00000400304 UCSC:uc002zht.2 ArrayExpress:E9PFP8
Bgee:E9PFP8 Uniprot:E9PFP8
Length = 361
Score = 306 (112.8 bits), Expect = 6.9e-54, Sum P(3) = 6.9e-54
Identities = 68/143 (47%), Positives = 89/143 (62%)
Query: 83 PGHTLWVTS-VDNVCTAYNFMCRSLEDYHINR-NRMENCSPQPLQLKLVIPATHCGSLIG 140
P + +T D + A+ + E+ IN + S P+ L+LV+PA+ CGSLIG
Sbjct: 55 PERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIG 114
Query: 141 KGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVV 200
KGG KIK+IR+ +GA VQVA DMLP STER VT+ G PD I Q + QIC+V++E
Sbjct: 115 KGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESP---P 171
Query: 201 KGAVIPYEPKTMNAGPVILSGGQ 223
KGA IPY PK + PVI +GGQ
Sbjct: 172 KGATIPYRPKPAST-PVIFAGGQ 193
Score = 171 (65.3 bits), Expect = 6.9e-54, Sum P(3) = 6.9e-54
Identities = 45/135 (33%), Positives = 67/135 (49%)
Query: 224 AYTLHGEYAVP------VQEVAGKKQPHPLAGLAVLGIEGIXXXXXXXXXXXXXXXXRVK 277
AYT+ G+YA+P + ++A ++ P P G G +
Sbjct: 217 AYTIQGQYAIPHPDLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMG---Q 273
Query: 278 SGGKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHI 336
S G D E+ + +D+ GC+IG+ G+++ EIRQ+SGAQI I TE S ++ I
Sbjct: 274 SSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITI 333
Query: 337 QGCQEAVSLAQYLIN 351
G +SLAQYLIN
Sbjct: 334 TGTPANISLAQYLIN 348
Score = 116 (45.9 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 28/71 (39%), Positives = 41/71 (57%)
Query: 118 NCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGN 177
+ SP +L IP G +IG+ G KI +IR +SGA +++A+ S+ER +T+ G
Sbjct: 278 DASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIAN-ATEGSSERQITITGT 336
Query: 178 PDTISQAIYQI 188
P IS A Y I
Sbjct: 337 PANISLAQYLI 347
Score = 109 (43.4 bits), Expect = 6.9e-54, Sum P(3) = 6.9e-54
Identities = 24/61 (39%), Positives = 39/61 (63%)
Query: 6 DGKIDEDTL---ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDR 62
+ K+ E L +T+R L H E+ +IG G V+++R+ESGA+I+I++G CP+R
Sbjct: 2 ESKVSEGGLNVTLTIRLLMHGK----EVGSIIGKKGETVKKMREESGARINISEGNCPER 57
Query: 63 I 63
I
Sbjct: 58 I 58
Score = 104 (41.7 bits), Expect = 6.2e-17, Sum P(2) = 6.2e-17
Identities = 31/116 (26%), Positives = 57/116 (49%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQ 183
L ++L++ GS+IGK G +K +R+ SGA + ++ P ERIVT+ G D I +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCP---ERIVTITGPTDAIFK 70
Query: 184 AIYQICLVLIECTLQVVKGAVIPYEPK-TMNAGPVILSGGQAYTLHGEYAVPVQEV 238
A I E + + + +P T+ +++ Q +L G+ ++E+
Sbjct: 71 AFAMIAYKFEEDIINSMSNSPATSKPPVTLR---LVVPASQCGSLIGKGGSKIKEI 123
Score = 77 (32.2 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 23/88 (26%), Positives = 44/88 (50%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGT--ESHKKMFHIQGCQEAVSL 345
V +V+ G +IGK GS++ EIR+ +GAQ+ + S ++ I G +A+
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAI-- 155
Query: 346 AQYLINMCIELQKNNTTNTSD--NPEPA 371
Q + +C+ + ++ + P+PA
Sbjct: 156 IQCVKQICVVMLESPPKGATIPYRPKPA 183
Score = 59 (25.8 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPD 61
V ++ LIG GG ++ +R+ +GA++ + P+
Sbjct: 104 VPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPN 140
>UNIPROTKB|F1NPL3 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00591502 Ensembl:ENSGALT00000021483 OMA:DLNMNLS
ArrayExpress:F1NPL3 Uniprot:F1NPL3
Length = 356
Score = 311 (114.5 bits), Expect = 2.3e-53, Sum P(3) = 2.3e-53
Identities = 67/144 (46%), Positives = 91/144 (63%)
Query: 83 PGHTLWVTS-VDNVCTAYNFMCRSLE-DYHINRNRMENCSPQPLQLKLVIPATHCGSLIG 140
P + +T D + A++ + E D + + S P+ L+LV+PA+ CGSLIG
Sbjct: 54 PERIVTITGPTDAIFKAFSMIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIG 113
Query: 141 KGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVV 200
KGG KIK+IR+ +GA VQVA DMLP STER VT+ G PD I Q + QIC+V++E +
Sbjct: 114 KGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLEVSEHSP 173
Query: 201 -KGAVIPYEPKTMNAGPVILSGGQ 223
KGA IPY PK +A P+I +GGQ
Sbjct: 174 PKGATIPYRPKPASA-PIIFAGGQ 196
Score = 154 (59.3 bits), Expect = 2.3e-53, Sum P(3) = 2.3e-53
Identities = 46/133 (34%), Positives = 64/133 (48%)
Query: 223 QAYTLHGEYAVPVQEVAGKKQ---PHPLAGLAVLGIEGIXXXXXXXXXXXXXXXXRVKSG 279
QA+T+ G+YA+P ++ Q HP LG V
Sbjct: 223 QAFTIQGQYAIPHPDLTKLHQLAMQHP--PFTPLG---------QTTPGFPAHFPSVPHI 271
Query: 280 GKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQG 338
G D E+ + +D+ GC+IG+ GS++ EIRQ+SGAQI I TE S ++ I G
Sbjct: 272 GLDATSPTSSHELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANATEGSAERQVTITG 331
Query: 339 CQEAVSLAQYLIN 351
+SLAQYLIN
Sbjct: 332 SPANISLAQYLIN 344
Score = 116 (45.9 bits), Expect = 2.3e-53, Sum P(3) = 2.3e-53
Identities = 25/61 (40%), Positives = 40/61 (65%)
Query: 6 DGKIDEDTL---ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDR 62
D K+ E L +T+R L H E+ +IG G V+++R+ESGA+I+I++G+CP+R
Sbjct: 1 DSKVSEGGLNVTLTIRLLMHGK----EVGSIIGKKGETVKKMREESGARINISEGSCPER 56
Query: 63 I 63
I
Sbjct: 57 I 57
Score = 114 (45.2 bits), Expect = 5.5e-16, Sum P(2) = 5.5e-16
Identities = 33/116 (28%), Positives = 56/116 (48%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQ 183
L ++L++ GS+IGK G +K +R+ SGA + ++ P ERIVT+ G D I +
Sbjct: 13 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGSCP---ERIVTITGPTDAIFK 69
Query: 184 AIYQICLVLIE-CTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEV 238
A I L E + V P T+ +++ Q +L G+ ++E+
Sbjct: 70 AFSMIALKFEEDINASMTNSTVTSKPPVTLR---LVVPASQCGSLIGKGGSKIKEI 122
Score = 113 (44.8 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIY 186
+L IP G +IG+ G KI +IR +SGA +++A+ S ER VT+ G+P IS A Y
Sbjct: 283 ELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIAN-ATEGSAERQVTITGSPANISLAQY 341
Query: 187 QI 188
I
Sbjct: 342 LI 343
Score = 75 (31.5 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 20/69 (28%), Positives = 36/69 (52%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGT--ESHKKMFHIQGCQEAVSL 345
V +V+ G +IGK GS++ EIR+ +GAQ+ + S ++ I G +A+
Sbjct: 97 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAI-- 154
Query: 346 AQYLINMCI 354
Q + +C+
Sbjct: 155 IQCVKQICV 163
Score = 59 (25.8 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPD 61
V ++ LIG GG ++ +R+ +GA++ + P+
Sbjct: 103 VPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPN 139
Score = 38 (18.4 bits), Expect = 0.00087, Sum P(2) = 0.00087
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 377 ISAFMTASVNSSLIEKPTPHPGSMVTLGGLSELLANIAASNVKSTVQTTGA 427
I+A MT NS++ KP +V L+ S +K ++TGA
Sbjct: 82 INASMT---NSTVTSKPPVTLRLVVPASQCGSLIGK-GGSKIKEIRESTGA 128
>UNIPROTKB|E1BVU6 [details] [associations]
symbol:LOC100858906 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 OMA:FWAPSVL EMBL:AADN02031620
EMBL:AADN02034412 EMBL:AADN02034413 EMBL:AADN02034414
IPI:IPI00682929 Ensembl:ENSGALT00000007004 Uniprot:E1BVU6
Length = 339
Score = 467 (169.5 bits), Expect = 3.3e-53, Sum P(2) = 3.3e-53
Identities = 114/281 (40%), Positives = 156/281 (55%)
Query: 83 PGHTLWVTS-VDNVCTAYNFMCRSLEDYHINRNRMENC---SPQPLQLKLVIPATHCGSL 138
P + +T D + A+ + E+ I N M N S P+ L+LV+PA+ CGSL
Sbjct: 55 PERIVTITGPTDAIFKAFAMIAYKFEE-DIT-NSMSNSTATSKPPVTLRLVVPASQCGSL 112
Query: 139 IGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQ 198
IGKGG KIK+IR+ +GA VQVA DMLP STER VT+ G PD I Q + QIC+V++E
Sbjct: 113 IGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESP-- 170
Query: 199 VVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVP-------VQEVAGKKQPHPLAGLA 251
KGA IPY PK + PVI +GGQAYT+ G+YA+P + ++A ++ P G
Sbjct: 171 -PKGATIPYRPKPAST-PVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFTPLGQT 228
Query: 252 VLGIEGIXXXXXXXXXXXXXXXXRVKSGGKDTGDDFVETEIVLTDDIAGCVIGKAGSRLL 311
G +S G D E+ + +D+ GC+IG+ G+++
Sbjct: 229 TPAFPGEKLPLHSSEEAQNLMG---QSSGLDASPPASTHELTIPNDLIGCIIGRQGTKIN 285
Query: 312 EIRQISGAQINIHTGTE-SHKKMFHIQGCQEAVSLAQYLIN 351
EIRQ+SGAQI I TE S ++ I G +SLAQYLIN
Sbjct: 286 EIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLIN 326
Score = 101 (40.6 bits), Expect = 3.3e-53, Sum P(2) = 3.3e-53
Identities = 23/61 (37%), Positives = 37/61 (60%)
Query: 6 DGKIDEDTL---ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDR 62
+ K+ E L +T+R L H E+ +IG GC+ R++SGA+I+I++G CP+R
Sbjct: 2 ESKVSEGGLNVTLTIRLLMHGK----EVGSIIGKMGCLHVVTREQSGARINISEGNCPER 57
Query: 63 I 63
I
Sbjct: 58 I 58
>UNIPROTKB|Q0VCU0 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0003677 GO:GO:0003723
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K13162 EMBL:BC120009
IPI:IPI00707807 RefSeq:NP_001068751.1 UniGene:Bt.7587
ProteinModelPortal:Q0VCU0 SMR:Q0VCU0 PRIDE:Q0VCU0
Ensembl:ENSBTAT00000024779 GeneID:506889 KEGG:bta:506889 CTD:57060
InParanoid:Q0VCU0 OMA:MSSSDAG OrthoDB:EOG48D0VR NextBio:20867786
Uniprot:Q0VCU0
Length = 403
Score = 298 (110.0 bits), Expect = 4.7e-53, Sum P(3) = 4.7e-53
Identities = 69/136 (50%), Positives = 89/136 (65%)
Query: 118 NCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGN 177
N S P+ L+LVIPA+ CGSLIGK G KIK+IR+ +GA VQVA D+LP STER VTV G
Sbjct: 96 NVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGV 155
Query: 178 PDTISQAIYQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYA-VPVQ 236
PD I + QIC V++E KGA IPY P +++ G V+LS Q +++ G+Y V
Sbjct: 156 PDAIILCVRQICAVILESP---PKGATIPYHP-SLSLGTVLLSTNQGFSVQGQYGTVTPA 211
Query: 237 EVAGKKQPHPLAGLAV 252
EV +Q L+G AV
Sbjct: 212 EVTKLQQ---LSGHAV 224
Score = 170 (64.9 bits), Expect = 4.7e-53, Sum P(3) = 4.7e-53
Identities = 45/128 (35%), Positives = 67/128 (52%)
Query: 280 GKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQG 338
G D E ++ +D+ GCVIG+ GS++ EIRQ+SGA I I E + ++ I G
Sbjct: 234 GLDPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITG 293
Query: 339 CQEAVSLAQYLINMCIELQKNNTTNTSDNPEPADLDAAISAFMTASVNSSLIEKPTPHPG 398
+++LAQYLI C+E K+ + T + P DL A S +TA + TP+
Sbjct: 294 SPVSIALAQYLITACLETAKSTSGGTPGSA-PTDLPAPFSPPLTALPTAPPGLLGTPYAI 352
Query: 399 SMVTLGGL 406
S+ GL
Sbjct: 353 SLSNFIGL 360
Score = 112 (44.5 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 38/133 (28%), Positives = 60/133 (45%)
Query: 120 SPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPD 179
S Q + ++P G +IG+ G KI +IR +SGA++++ + + ER VT+ G+P
Sbjct: 238 STQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQA-EGAGERHVTITGSPV 296
Query: 180 TISQAIYQI--CLVLIECTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQE 237
+I+ A Y I CL + T G+ P + L L YA+ +
Sbjct: 297 SIALAQYLITACLETAKSTSGGTPGSAPTDLPAPFSPPLTALPTAPPGLLGTPYAISLSN 356
Query: 238 VAGKKQPHPLAGL 250
G K P P L
Sbjct: 357 FIGLK-PVPFLAL 368
Score = 110 (43.8 bits), Expect = 4.7e-53, Sum P(3) = 4.7e-53
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 1 MDGNGDGKIDEDTL---ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDG 57
M G+ G +E L +T+R L H E+ +IG G V+R+R++S A+I+I++G
Sbjct: 1 MSGSDAGLEEEPELSITLTLRMLMHGK----EVGSIIGKKGETVKRIREQSSARITISEG 56
Query: 58 ACPDRI 63
+CP+RI
Sbjct: 57 SCPERI 62
Score = 106 (42.4 bits), Expect = 8.7e-17, Sum P(2) = 8.7e-17
Identities = 31/117 (26%), Positives = 55/117 (47%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQ 183
L L++++ GS+IGK G +K IR+ S A + ++ P ERI T+ G+ +
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCP---ERITTITGSTAAVFH 74
Query: 184 AIYQICLVLIE--CTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEV 238
A+ I L E C G + P T+ +++ Q +L G+ ++E+
Sbjct: 75 AVSMIAFKLDEDLCAAPA-NGGNVSRPPVTLR---LVIPASQCGSLIGKAGTKIKEI 127
Score = 77 (32.2 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGT--ESHKKMFHIQGCQEAVSL 345
V +V+ G +IGKAG+++ EIR+ +GAQ+ + S ++ + G +A+ L
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 161
Score = 53 (23.7 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 14/58 (24%), Positives = 29/58 (50%)
Query: 4 NGDGKIDEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPD 61
NG G + +T+R + +S + LIG G ++ +R+ +GA++ + P+
Sbjct: 93 NG-GNVSRPP-VTLRLVIPAS----QCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPN 144
>MGI|MGI:1890471 [details] [associations]
symbol:Pcbp4 "poly(rC) binding protein 4" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006977 "DNA damage response, signal transduction by p53 class
mediator resulting in cell cycle arrest" evidence=ISO] [GO:0007050
"cell cycle arrest" evidence=ISO] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:1890471 GO:GO:0005737 GO:GO:0003677
GO:GO:0003723 GO:GO:0030529 GeneTree:ENSGT00550000074311
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K13162
CTD:57060 OrthoDB:EOG48D0VR EMBL:AF176328 EMBL:BC010694
IPI:IPI00118718 RefSeq:NP_067542.3 UniGene:Mm.286394
ProteinModelPortal:P57724 SMR:P57724 STRING:P57724
PhosphoSite:P57724 PaxDb:P57724 PRIDE:P57724
Ensembl:ENSMUST00000024260 GeneID:59092 KEGG:mmu:59092
InParanoid:P57724 NextBio:314742 Bgee:P57724 CleanEx:MM_PCBP4
Genevestigator:P57724 GermOnline:ENSMUSG00000023495 Uniprot:P57724
Length = 403
Score = 299 (110.3 bits), Expect = 1.2e-52, Sum P(3) = 1.2e-52
Identities = 69/134 (51%), Positives = 89/134 (66%)
Query: 120 SPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPD 179
S P+ L+LVIPA+ CGSLIGK G KIK+IR+ +GA VQVA D+LP STER VTV G PD
Sbjct: 98 SRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPD 157
Query: 180 TISQAIYQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEY-AVPVQEV 238
I + QIC V++E KGA IPY P +++ G V+LS Q +++ G+Y AV EV
Sbjct: 158 AIILCVRQICAVILESP---PKGATIPYHP-SLSLGTVLLSANQGFSVQGQYGAVTPAEV 213
Query: 239 AGKKQPHPLAGLAV 252
+Q L+G AV
Sbjct: 214 TKLQQ---LSGHAV 224
Score = 171 (65.3 bits), Expect = 1.2e-52, Sum P(3) = 1.2e-52
Identities = 45/128 (35%), Positives = 67/128 (52%)
Query: 280 GKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQG 338
G D E ++ +D+ GCVIG+ GS++ EIRQ+SGA I I E + ++ I G
Sbjct: 234 GMDPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITG 293
Query: 339 CQEAVSLAQYLINMCIELQKNNTTNTSDNPEPADLDAAISAFMTASVNSSLIEKPTPHPG 398
+++LAQYLI C+E K+ + T + PADL S +TA + TP+
Sbjct: 294 SPVSIALAQYLITACLETAKSTSGGTPGSA-PADLPTPFSPPLTALPTAPPGLLGTPYAI 352
Query: 399 SMVTLGGL 406
S+ GL
Sbjct: 353 SLSNFIGL 360
Score = 114 (45.2 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 40/134 (29%), Positives = 64/134 (47%)
Query: 120 SPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPD 179
S Q + ++P G +IG+ G KI +IR +SGA++++ + + ER VT+ G+P
Sbjct: 238 STQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQA-EGAGERHVTITGSPV 296
Query: 180 TISQAIYQI--CLVLIECTLQVVKGAVIPYEPKTMNAGPVI-LSGGQAYTLHGEYAVPVQ 236
+I+ A Y I CL + T G+ P + T + P+ L L YA+ +
Sbjct: 297 SIALAQYLITACLETAKSTSGGTPGSA-PADLPTPFSPPLTALPTAPPGLLGTPYAISLS 355
Query: 237 EVAGKKQPHPLAGL 250
G K P P L
Sbjct: 356 NFIGLK-PVPFLAL 368
Score = 107 (42.7 bits), Expect = 5.2e-17, Sum P(2) = 5.2e-17
Identities = 31/117 (26%), Positives = 55/117 (47%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQ 183
L L++++ GS+IGK G +K IR+ S A + ++ P ERI T+ G+ +
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCP---ERITTITGSTAAVFH 74
Query: 184 AIYQICLVLIE--CTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEV 238
A+ I L E C G + P T+ +++ Q +L G+ ++E+
Sbjct: 75 AVSMIAFKLDEDLCAAPA-NGGSVSRPPVTLR---LVIPASQCGSLIGKAGTKIKEI 127
Score = 104 (41.7 bits), Expect = 1.2e-52, Sum P(3) = 1.2e-52
Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 15 ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
+T+R L H E+ +IG G V+R+R++S A+I+I++G+CP+RI
Sbjct: 18 LTLRMLMHGK----EVGSIIGKKGETVKRIREQSSARITISEGSCPERI 62
Score = 77 (32.2 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGT--ESHKKMFHIQGCQEAVSL 345
V +V+ G +IGKAG+++ EIR+ +GAQ+ + S ++ + G +A+ L
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 161
Score = 53 (23.7 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 14/58 (24%), Positives = 29/58 (50%)
Query: 4 NGDGKIDEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPD 61
NG G + +T+R + +S + LIG G ++ +R+ +GA++ + P+
Sbjct: 93 NG-GSVSRPP-VTLRLVIPAS----QCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPN 144
>RGD|1307910 [details] [associations]
symbol:Pcbp4 "poly(rC) binding protein 4" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO] [GO:0006977
"DNA damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=ISO] [GO:0007050 "cell
cycle arrest" evidence=ISO] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307910 GO:GO:0003723
GeneTree:ENSGT00550000074311 KO:K13162 CTD:57060 OMA:MSSSDAG
OrthoDB:EOG48D0VR IPI:IPI00366708 RefSeq:NP_001178812.1
UniGene:Rn.40405 Ensembl:ENSRNOT00000017139 GeneID:363133
KEGG:rno:363133 UCSC:RGD:1307910 NextBio:682555 Uniprot:D3ZCS3
Length = 403
Score = 299 (110.3 bits), Expect = 1.6e-52, Sum P(3) = 1.6e-52
Identities = 69/134 (51%), Positives = 89/134 (66%)
Query: 120 SPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPD 179
S P+ L+LVIPA+ CGSLIGK G KIK+IR+ +GA VQVA D+LP STER VTV G PD
Sbjct: 98 SRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPD 157
Query: 180 TISQAIYQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEY-AVPVQEV 238
I + QIC V++E KGA IPY P +++ G V+LS Q +++ G+Y AV EV
Sbjct: 158 AIILCVRQICAVILESP---PKGATIPYHP-SLSLGTVLLSANQGFSVQGQYGAVTPAEV 213
Query: 239 AGKKQPHPLAGLAV 252
+Q L+G AV
Sbjct: 214 TKLQQ---LSGHAV 224
Score = 170 (64.9 bits), Expect = 1.6e-52, Sum P(3) = 1.6e-52
Identities = 45/128 (35%), Positives = 67/128 (52%)
Query: 280 GKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQG 338
G D E ++ +D+ GCVIG+ GS++ EIRQ+SGA I I E + ++ I G
Sbjct: 234 GLDPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITG 293
Query: 339 CQEAVSLAQYLINMCIELQKNNTTNTSDNPEPADLDAAISAFMTASVNSSLIEKPTPHPG 398
+++LAQYLI C+E K+ + T + PADL S +TA + TP+
Sbjct: 294 SPVSIALAQYLITACLETAKSTSGGTPGSA-PADLPTPFSPPLTALPTAPPGLLGTPYAI 352
Query: 399 SMVTLGGL 406
S+ GL
Sbjct: 353 SLSNFIGL 360
Score = 114 (45.2 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 40/134 (29%), Positives = 64/134 (47%)
Query: 120 SPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPD 179
S Q + ++P G +IG+ G KI +IR +SGA++++ + + ER VT+ G+P
Sbjct: 238 STQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQA-EGAGERHVTITGSPV 296
Query: 180 TISQAIYQI--CLVLIECTLQVVKGAVIPYEPKTMNAGPVI-LSGGQAYTLHGEYAVPVQ 236
+I+ A Y I CL + T G+ P + T + P+ L L YA+ +
Sbjct: 297 SIALAQYLITACLETAKSTSGGTPGSA-PADLPTPFSPPLTALPTAPPGLLGTPYAISLS 355
Query: 237 EVAGKKQPHPLAGL 250
G K P P L
Sbjct: 356 NFIGLK-PVPFLAL 368
Score = 107 (42.7 bits), Expect = 6.8e-17, Sum P(2) = 6.8e-17
Identities = 31/117 (26%), Positives = 55/117 (47%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQ 183
L L++++ GS+IGK G +K IR+ S A + ++ P ERI T+ G+ +
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCP---ERITTITGSTAAVFH 74
Query: 184 AIYQICLVLIE--CTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEV 238
A+ I L E C G + P T+ +++ Q +L G+ ++E+
Sbjct: 75 AVSMIAFKLDEDLCAAPA-NGGSVSRPPVTLR---LVIPASQCGSLIGKAGTKIKEI 127
Score = 104 (41.7 bits), Expect = 1.6e-52, Sum P(3) = 1.6e-52
Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 15 ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
+T+R L H E+ +IG G V+R+R++S A+I+I++G+CP+RI
Sbjct: 18 LTLRMLMHGK----EVGSIIGKKGETVKRIREQSSARITISEGSCPERI 62
Score = 77 (32.2 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGT--ESHKKMFHIQGCQEAVSL 345
V +V+ G +IGKAG+++ EIR+ +GAQ+ + S ++ + G +A+ L
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 161
Score = 53 (23.7 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 14/58 (24%), Positives = 29/58 (50%)
Query: 4 NGDGKIDEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPD 61
NG G + +T+R + +S + LIG G ++ +R+ +GA++ + P+
Sbjct: 93 NG-GSVSRPP-VTLRLVIPAS----QCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPN 144
>UNIPROTKB|E2RCF9 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 CTD:5094
KO:K13162 OMA:CVVMLEL EMBL:AAEX03014980 RefSeq:XP_857995.1
ProteinModelPortal:E2RCF9 Ensembl:ENSCAFT00000010996 GeneID:477596
KEGG:cfa:477596 Uniprot:E2RCF9
Length = 331
Score = 453 (164.5 bits), Expect = 3.7e-52, Sum P(2) = 3.7e-52
Identities = 103/249 (41%), Positives = 142/249 (57%)
Query: 107 EDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPM 166
ED + S P+ L+LV+PA+ CGSLIGKGGCKIK+IR+ +GA VQVA DMLP
Sbjct: 81 EDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN 140
Query: 167 STERIVTVHGNPDTISQAIYQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSGGQAYT 226
STER +T+ G P +I + + QIC+V++E KG IPY PK ++ PVI +GGQAYT
Sbjct: 141 STERAITIAGIPQSIIECVKQICVVMLESP---PKGVTIPYRPKP-SSSPVIFAGGQAYT 196
Query: 227 LHGEYAVPVQEVAGKKQPHPLAGLAVLGIEGIXXXXXXXXXXXXXXXXRVKS--GGKDTG 284
+ G+YA+P ++ Q LA+ VK G D
Sbjct: 197 IQGQYAIPQPDLTKLHQ------LAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDAS 250
Query: 285 DDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQGCQEAV 343
E+ + +D+ GC+IG+ G+++ EIRQ+SGAQI I E S + I G ++
Sbjct: 251 AQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASI 310
Query: 344 SLAQYLINM 352
SLAQYLIN+
Sbjct: 311 SLAQYLINV 319
Score = 105 (42.0 bits), Expect = 3.7e-52, Sum P(2) = 3.7e-52
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 15 ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
+T+R L H E+ +IG G V+++R+ESGA+I+I++G CP+RI
Sbjct: 14 LTIRLLMHGK----EVGSIIGKKGESVKKMREESGARINISEGNCPERI 58
>UNIPROTKB|Q15366 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0005737
"cytoplasm" evidence=IDA;NAS] [GO:0016071 "mRNA metabolic process"
evidence=NAS] [GO:0031625 "ubiquitin protein ligase binding"
evidence=IPI] [GO:0050687 "negative regulation of defense response
to virus" evidence=IMP] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0032480 "negative
regulation of type I interferon production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 Reactome:REACT_6900 GO:GO:0005654 GO:GO:0043161
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0045087 EMBL:CH471054
GO:GO:0051607 GO:GO:0003723 GO:GO:0030529 EMBL:AC068889
GO:GO:0000398 EMBL:AC023509 GO:GO:0032480 GO:GO:0050687
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520
EMBL:X78136 EMBL:AB188306 EMBL:AK292141 EMBL:AB208825 EMBL:BC001155
EMBL:BC071942 EMBL:BC107688 IPI:IPI00012066 IPI:IPI00216689
IPI:IPI00470509 IPI:IPI00791223 IPI:IPI00796337 PIR:S65679
RefSeq:NP_001092090.1 RefSeq:NP_001122383.1 RefSeq:NP_001122384.1
RefSeq:NP_001122385.1 RefSeq:NP_001122386.1 RefSeq:NP_005007.2
RefSeq:NP_114366.1 UniGene:Hs.546271 PDB:2AXY PDB:2JZX PDB:2P2R
PDB:2PQU PDB:2PY9 PDBsum:2AXY PDBsum:2JZX PDBsum:2P2R PDBsum:2PQU
PDBsum:2PY9 ProteinModelPortal:Q15366 SMR:Q15366 DIP:DIP-58934N
IntAct:Q15366 MINT:MINT-96192 STRING:Q15366 PhosphoSite:Q15366
DMDM:6707736 PaxDb:Q15366 PeptideAtlas:Q15366 PRIDE:Q15366
DNASU:5094 Ensembl:ENST00000359282 Ensembl:ENST00000359462
Ensembl:ENST00000439930 Ensembl:ENST00000447282
Ensembl:ENST00000546463 Ensembl:ENST00000548933
Ensembl:ENST00000552296 GeneID:5094 KEGG:hsa:5094 UCSC:uc001sdl.4
CTD:5094 GeneCards:GC12P053844 HGNC:HGNC:8648 HPA:HPA038356
MIM:601210 neXtProt:NX_Q15366 PharmGKB:PA32987 InParanoid:Q15366
KO:K13162 OMA:CVVMLEL ChiTaRS:PCBP2 EvolutionaryTrace:Q15366
GenomeRNAi:5094 NextBio:19648 ArrayExpress:Q15366 Bgee:Q15366
CleanEx:HS_PCBP2 Genevestigator:Q15366 GermOnline:ENSG00000197111
Uniprot:Q15366
Length = 365
Score = 301 (111.0 bits), Expect = 6.6e-52, Sum P(3) = 6.6e-52
Identities = 61/118 (51%), Positives = 80/118 (67%)
Query: 107 EDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPM 166
ED + S P+ L+LV+PA+ CGSLIGKGGCKIK+IR+ +GA VQVA DMLP
Sbjct: 81 EDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN 140
Query: 167 STERIVTVHGNPDTISQAIYQICLVLIECTLQVV-KGAVIPYEPKTMNAGPVILSGGQ 223
STER +T+ G P +I + + QIC+V++E Q KG IPY PK ++ PVI +GGQ
Sbjct: 141 STERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPKP-SSSPVIFAGGQ 197
Score = 161 (61.7 bits), Expect = 6.6e-52, Sum P(3) = 6.6e-52
Identities = 49/154 (31%), Positives = 72/154 (46%)
Query: 203 AVIPYEPKTMNAGPVILSGG--QAYTLHGEYAVPVQEVAGKKQPHPLAGLAVLGIEGIXX 260
A P+ +M P L G +AYT+ G+YA+P ++ Q LA+
Sbjct: 207 ASFPHTTPSMCLNPD-LEGPPLEAYTIQGQYAIPQPDLTKLHQ------LAMQQSHFPMT 259
Query: 261 XXXXXXXXXXXXXXRVKS-GGKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGA 319
VK G D E+ + +D+ GC+IG+ G+++ EIRQ+SGA
Sbjct: 260 HGNTGFSGIESSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGA 319
Query: 320 QINIHTGTE-SHKKMFHIQGCQEAVSLAQYLINM 352
QI I E S + I G ++SLAQYLIN+
Sbjct: 320 QIKIANPVEGSTDRQVTITGSAASISLAQYLINV 353
Score = 115 (45.5 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 28/71 (39%), Positives = 43/71 (60%)
Query: 118 NCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGN 177
+ S Q +L IP G +IG+ G KI +IR +SGA +++A+ + ST+R VT+ G+
Sbjct: 282 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV-EGSTDRQVTITGS 340
Query: 178 PDTISQAIYQI 188
+IS A Y I
Sbjct: 341 AASISLAQYLI 351
Score = 105 (42.0 bits), Expect = 6.6e-52, Sum P(3) = 6.6e-52
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 15 ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
+T+R L H E+ +IG G V+++R+ESGA+I+I++G CP+RI
Sbjct: 14 LTIRLLMHGK----EVGSIIGKKGESVKKMREESGARINISEGNCPERI 58
Score = 69 (29.3 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPD 61
V ++ LIG GGC ++ +R+ +GA++ + P+
Sbjct: 104 VPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN 140
Score = 67 (28.6 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI 323
V +V+ G +IGK G ++ EIR+ +GAQ+ +
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
>RGD|1309626 [details] [associations]
symbol:Pcbp2 "poly(rC) binding protein 2" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0031625 "ubiquitin
protein ligase binding" evidence=ISO] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0050687 "negative regulation of defense response to virus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1309626 GO:GO:0003723 eggNOG:NOG315872
HOVERGEN:HBG053520 CTD:5094 KO:K13162 IPI:IPI00464805 EMBL:BC078906
RefSeq:NP_001013241.1 UniGene:Rn.106644 ProteinModelPortal:Q6AYU5
SMR:Q6AYU5 PRIDE:Q6AYU5 GeneID:363005 KEGG:rno:363005
UCSC:RGD:1309626 NextBio:682109 Genevestigator:Q6AYU5
Uniprot:Q6AYU5
Length = 365
Score = 301 (111.0 bits), Expect = 6.6e-52, Sum P(3) = 6.6e-52
Identities = 61/118 (51%), Positives = 80/118 (67%)
Query: 107 EDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPM 166
ED + S P+ L+LV+PA+ CGSLIGKGGCKIK+IR+ +GA VQVA DMLP
Sbjct: 81 EDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN 140
Query: 167 STERIVTVHGNPDTISQAIYQICLVLIECTLQVV-KGAVIPYEPKTMNAGPVILSGGQ 223
STER +T+ G P +I + + QIC+V++E Q KG IPY PK ++ PVI +GGQ
Sbjct: 141 STERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPKP-SSSPVIFAGGQ 197
Score = 161 (61.7 bits), Expect = 6.6e-52, Sum P(3) = 6.6e-52
Identities = 49/154 (31%), Positives = 72/154 (46%)
Query: 203 AVIPYEPKTMNAGPVILSGG--QAYTLHGEYAVPVQEVAGKKQPHPLAGLAVLGIEGIXX 260
A P+ +M P L G +AYT+ G+YA+P ++ Q LA+
Sbjct: 207 ASFPHTTPSMCLNPD-LEGPPLEAYTIQGQYAIPQPDLTKLHQ------LAMQQSHFPMT 259
Query: 261 XXXXXXXXXXXXXXRVKS-GGKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGA 319
VK G D E+ + +D+ GC+IG+ G+++ EIRQ+SGA
Sbjct: 260 HGNTGFSGIESSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGA 319
Query: 320 QINIHTGTE-SHKKMFHIQGCQEAVSLAQYLINM 352
QI I E S + I G ++SLAQYLIN+
Sbjct: 320 QIKIANPVEGSTDRQVTITGSAASISLAQYLINV 353
Score = 115 (45.5 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 28/71 (39%), Positives = 43/71 (60%)
Query: 118 NCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGN 177
+ S Q +L IP G +IG+ G KI +IR +SGA +++A+ + ST+R VT+ G+
Sbjct: 282 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV-EGSTDRQVTITGS 340
Query: 178 PDTISQAIYQI 188
+IS A Y I
Sbjct: 341 AASISLAQYLI 351
Score = 105 (42.0 bits), Expect = 6.6e-52, Sum P(3) = 6.6e-52
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 15 ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
+T+R L H E+ +IG G V+++R+ESGA+I+I++G CP+RI
Sbjct: 14 LTIRLLMHGK----EVGSIIGKKGESVKKMREESGARINISEGNCPERI 58
Score = 69 (29.3 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPD 61
V ++ LIG GGC ++ +R+ +GA++ + P+
Sbjct: 104 VPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN 140
Score = 67 (28.6 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI 323
V +V+ G +IGK G ++ EIR+ +GAQ+ +
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
>MGI|MGI:108202 [details] [associations]
symbol:Pcbp2 "poly(rC) binding protein 2" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0031625 "ubiquitin protein ligase binding" evidence=ISO]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=IEA] [GO:0050687 "negative regulation of defense response
to virus" evidence=ISO] [GO:0051607 "defense response to virus"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:108202 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0003677 GO:GO:0045087
GO:GO:0051607 GO:GO:0003723 GO:GO:0030529 GO:GO:0050687
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K CTD:5094 KO:K13162 OMA:CVVMLEL
ChiTaRS:PCBP2 EMBL:L19661 EMBL:X75947 EMBL:X97982 EMBL:AF236845
EMBL:AF236842 EMBL:AF236843 EMBL:AF236844 IPI:IPI00127707
IPI:IPI00221796 IPI:IPI00221799 PIR:S78515 RefSeq:NP_001096635.1
RefSeq:NP_001096636.1 RefSeq:NP_035172.2 UniGene:Mm.236513
ProteinModelPortal:Q61990 SMR:Q61990 IntAct:Q61990 STRING:Q61990
PhosphoSite:Q61990 REPRODUCTION-2DPAGE:Q61990 PaxDb:Q61990
PRIDE:Q61990 Ensembl:ENSMUST00000077037 Ensembl:ENSMUST00000078404
Ensembl:ENSMUST00000108838 GeneID:18521 KEGG:mmu:18521
UCSC:uc007xvy.2 UCSC:uc007xvz.2 UCSC:uc009vat.1 InParanoid:Q61990
NextBio:294276 Bgee:Q61990 CleanEx:MM_PCBP2 Genevestigator:Q61990
GermOnline:ENSMUSG00000056851 Uniprot:Q61990
Length = 362
Score = 296 (109.3 bits), Expect = 2.2e-51, Sum P(3) = 2.2e-51
Identities = 60/117 (51%), Positives = 79/117 (67%)
Query: 107 EDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPM 166
ED + S P+ L+LV+PA+ CGSLIGKGGCKIK+IR+ +GA VQVA DMLP
Sbjct: 81 EDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN 140
Query: 167 STERIVTVHGNPDTISQAIYQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSGGQ 223
STER +T+ G P +I + + QIC+V++E KG IPY PK ++ PVI +GGQ
Sbjct: 141 STERAITIAGIPQSIIECVKQICVVMLESP---PKGVTIPYRPKP-SSSPVIFAGGQ 193
Score = 161 (61.7 bits), Expect = 2.2e-51, Sum P(3) = 2.2e-51
Identities = 49/155 (31%), Positives = 72/155 (46%)
Query: 203 AVIPYEPKTMNAGPVILSGG--QAYTLHGEYAVPVQEVAGKKQPHPLAGLAVLGIEGIXX 260
A P+ +M P L G +AYT+ G+YA+P ++ Q LA+
Sbjct: 203 ASFPHTTPSMCLNPD-LEGPPLEAYTIQGQYAIPQPDLTKLHQ------LAMQQSHFPMT 255
Query: 261 XXXXXXXXXXXXXXRVKS--GGKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISG 318
VK G D E+ + +D+ GC+IG+ G+++ EIRQ+SG
Sbjct: 256 HGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSG 315
Query: 319 AQINIHTGTE-SHKKMFHIQGCQEAVSLAQYLINM 352
AQI I E S + I G ++SLAQYLIN+
Sbjct: 316 AQIKIANPVEGSTDRQVTITGSAASISLAQYLINV 350
Score = 115 (45.5 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 28/71 (39%), Positives = 43/71 (60%)
Query: 118 NCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGN 177
+ S Q +L IP G +IG+ G KI +IR +SGA +++A+ + ST+R VT+ G+
Sbjct: 279 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV-EGSTDRQVTITGS 337
Query: 178 PDTISQAIYQI 188
+IS A Y I
Sbjct: 338 AASISLAQYLI 348
Score = 105 (42.0 bits), Expect = 2.2e-51, Sum P(3) = 2.2e-51
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 15 ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
+T+R L H E+ +IG G V+++R+ESGA+I+I++G CP+RI
Sbjct: 14 LTIRLLMHGK----EVGSIIGKKGESVKKMREESGARINISEGNCPERI 58
Score = 69 (29.3 bits), Expect = 4.1e-12, Sum P(2) = 4.1e-12
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPD 61
V ++ LIG GGC ++ +R+ +GA++ + P+
Sbjct: 104 VPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN 140
Score = 67 (28.6 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI 323
V +V+ G +IGK G ++ EIR+ +GAQ+ +
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
>UNIPROTKB|F8VZX2 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021216
ProteinModelPortal:F8VZX2 SMR:F8VZX2 Ensembl:ENST00000549863
ArrayExpress:F8VZX2 Bgee:F8VZX2 Uniprot:F8VZX2
Length = 321
Score = 309 (113.8 bits), Expect = 4.5e-51, Sum P(3) = 4.5e-51
Identities = 63/123 (51%), Positives = 82/123 (66%)
Query: 107 EDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPM 166
ED + S P+ L+LV+PA+ CGSLIGKGGCKIK+IR+ +GA VQVA DMLP
Sbjct: 81 EDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN 140
Query: 167 STERIVTVHGNPDTISQAIYQICLVLIECTLQVV-KGAVIPYEPKTMNAGPVILSGGQAY 225
STER +T+ G P +I + + QIC+V++E Q KG IPY PK ++ PVI +GGQ
Sbjct: 141 STERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPKP-SSSPVIFAGGQLT 199
Query: 226 TLH 228
LH
Sbjct: 200 KLH 202
Score = 145 (56.1 bits), Expect = 4.5e-51, Sum P(3) = 4.5e-51
Identities = 31/74 (41%), Positives = 45/74 (60%)
Query: 280 GKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQG 338
G D E+ + +D+ GC+IG+ G+++ EIRQ+SGAQI I E S + I G
Sbjct: 236 GLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITG 295
Query: 339 CQEAVSLAQYLINM 352
++SLAQYLIN+
Sbjct: 296 SAASISLAQYLINV 309
Score = 115 (45.5 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 28/71 (39%), Positives = 43/71 (60%)
Query: 118 NCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGN 177
+ S Q +L IP G +IG+ G KI +IR +SGA +++A+ + ST+R VT+ G+
Sbjct: 238 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV-EGSTDRQVTITGS 296
Query: 178 PDTISQAIYQI 188
+IS A Y I
Sbjct: 297 AASISLAQYLI 307
Score = 105 (42.0 bits), Expect = 4.5e-51, Sum P(3) = 4.5e-51
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 15 ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
+T+R L H E+ +IG G V+++R+ESGA+I+I++G CP+RI
Sbjct: 14 LTIRLLMHGK----EVGSIIGKKGESVKKMREESGARINISEGNCPERI 58
Score = 98 (39.6 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 30/116 (25%), Positives = 56/116 (48%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQ 183
L ++L++ GS+IGK G +K +R+ SGA + ++ P ERI+T+ G + I +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCP---ERIITLAGPTNAIFK 70
Query: 184 AIYQICLVLIE-CTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEV 238
A I L E + + P T+ +++ Q +L G+ ++E+
Sbjct: 71 AFAMIIDKLEEDISSSMTNSTAASRPPVTLR---LVVPASQCGSLIGKGGCKIKEI 123
Score = 69 (29.3 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPD 61
V ++ LIG GGC ++ +R+ +GA++ + P+
Sbjct: 104 VPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN 140
Score = 67 (28.6 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI 323
V +V+ G +IGK G ++ EIR+ +GAQ+ +
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
>UNIPROTKB|J9P8W8 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AAEX03014817 Ensembl:ENSCAFT00000021540 OMA:QTSSHEM
Uniprot:J9P8W8
Length = 315
Score = 307 (113.1 bits), Expect = 7.3e-51, Sum P(3) = 7.3e-51
Identities = 61/115 (53%), Positives = 83/115 (72%)
Query: 120 SPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPD 179
S P+ L+LV+PA+ CGSLIGKGGCKIK+IR+ +GA VQVA DMLP STER +T+ G P
Sbjct: 94 SRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQ 153
Query: 180 TISQAIYQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVP 234
+I + + QIC+V+++ KG IPY PK ++ PVI +GG T+ G+YA+P
Sbjct: 154 SIIECVKQICVVMLD---PPSKGVTIPYRPKP-SSSPVIFAGG---TIQGQYAIP 201
Score = 149 (57.5 bits), Expect = 7.3e-51, Sum P(3) = 7.3e-51
Identities = 32/76 (42%), Positives = 46/76 (60%)
Query: 278 SGGKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHI 336
SG D E+ + +D+ GC+IG+ G+++ EIRQ+SGAQI I E S + I
Sbjct: 228 SGSLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTI 287
Query: 337 QGCQEAVSLAQYLINM 352
G ++SLAQYLIN+
Sbjct: 288 TGSAASISLAQYLINV 303
Score = 115 (45.5 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 28/71 (39%), Positives = 43/71 (60%)
Query: 118 NCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGN 177
+ S Q +L IP G +IG+ G KI +IR +SGA +++A+ + ST+R VT+ G+
Sbjct: 232 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV-EGSTDRQVTITGS 290
Query: 178 PDTISQAIYQI 188
+IS A Y I
Sbjct: 291 AASISLAQYLI 301
Score = 101 (40.6 bits), Expect = 7.3e-51, Sum P(3) = 7.3e-51
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 15 ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
+T+R L H E+ +IG G V+++R+ESGA I+I++G CP+RI
Sbjct: 14 LTIRLLMHGK----EVGSIIGKKGESVKKMREESGAGINISEGNCPERI 58
Score = 98 (39.6 bits), Expect = 5.3e-14, Sum P(2) = 5.3e-14
Identities = 30/116 (25%), Positives = 56/116 (48%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQ 183
L ++L++ GS+IGK G +K +R+ SGA + ++ P ERI+T+ G + I +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGAGINISEGNCP---ERIITLAGPTNAIFK 70
Query: 184 AIYQICLVLIEC-TLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEV 238
A I L E + + P T+ +++ Q +L G+ ++E+
Sbjct: 71 AFAMIIDKLEEVISSSMTNSTAASRPPVTLR---LVVPASQCGSLIGKGGCKIKEI 123
Score = 69 (29.3 bits), Expect = 5.4e-11, Sum P(2) = 5.4e-11
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPD 61
V ++ LIG GGC ++ +R+ +GA++ + P+
Sbjct: 104 VPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN 140
Score = 67 (28.6 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI 323
V +V+ G +IGK G ++ EIR+ +GAQ+ +
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
>UNIPROTKB|F1SFQ4 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050687 "negative regulation of defense response to
virus" evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0031625 "ubiquitin
protein ligase binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0043161 GO:GO:0003723
GO:GO:0050687 GeneTree:ENSGT00550000074311 CTD:5094 KO:K13162
OMA:CVVMLEL EMBL:CU928648 RefSeq:NP_001231441.1 UniGene:Ssc.4977
Ensembl:ENSSSCT00000000294 GeneID:397665 KEGG:ssc:397665
ArrayExpress:F1SFQ4 Uniprot:F1SFQ4
Length = 353
Score = 301 (111.0 bits), Expect = 1.2e-50, Sum P(3) = 1.2e-50
Identities = 61/118 (51%), Positives = 80/118 (67%)
Query: 107 EDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPM 166
ED + S P+ L+LV+PA+ CGSLIGKGGCKIK+IR+ +GA VQVA DMLP
Sbjct: 81 EDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN 140
Query: 167 STERIVTVHGNPDTISQAIYQICLVLIECTLQVV-KGAVIPYEPKTMNAGPVILSGGQ 223
STER +T+ G P +I + + QIC+V++E Q KG IPY PK ++ PVI +GGQ
Sbjct: 141 STERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPKP-SSSPVIFAGGQ 197
Score = 149 (57.5 bits), Expect = 1.2e-50, Sum P(3) = 1.2e-50
Identities = 32/76 (42%), Positives = 46/76 (60%)
Query: 278 SGGKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHI 336
S G D E+ + +D+ GC+IG+ G+++ EIRQ+SGAQI I E S + I
Sbjct: 266 SAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTI 325
Query: 337 QGCQEAVSLAQYLINM 352
G ++SLAQYLIN+
Sbjct: 326 TGSAASISLAQYLINV 341
Score = 115 (45.5 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 28/71 (39%), Positives = 43/71 (60%)
Query: 118 NCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGN 177
+ S Q +L IP G +IG+ G KI +IR +SGA +++A+ + ST+R VT+ G+
Sbjct: 270 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV-EGSTDRQVTITGS 328
Query: 178 PDTISQAIYQI 188
+IS A Y I
Sbjct: 329 AASISLAQYLI 339
Score = 105 (42.0 bits), Expect = 1.2e-50, Sum P(3) = 1.2e-50
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 15 ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
+T+R L H E+ +IG G V+++R+ESGA+I+I++G CP+RI
Sbjct: 14 LTIRLLMHGK----EVGSIIGKKGESVKKMREESGARINISEGNCPERI 58
Score = 98 (39.6 bits), Expect = 9.4e-14, Sum P(2) = 9.4e-14
Identities = 30/116 (25%), Positives = 56/116 (48%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQ 183
L ++L++ GS+IGK G +K +R+ SGA + ++ P ERI+T+ G + I +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCP---ERIITLAGPTNAIFK 70
Query: 184 AIYQICLVLIE-CTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEV 238
A I L E + + P T+ +++ Q +L G+ ++E+
Sbjct: 71 AFAMIIDKLEEDISSSMTNSTAASRPPVTLR---LVVPASQCGSLIGKGGCKIKEI 123
Score = 69 (29.3 bits), Expect = 2.0e-12, Sum P(3) = 2.0e-12
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPD 61
V ++ LIG GGC ++ +R+ +GA++ + P+
Sbjct: 104 VPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN 140
Score = 67 (28.6 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI 323
V +V+ G +IGK G ++ EIR+ +GAQ+ +
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
Score = 51 (23.0 bits), Expect = 4.4e-16, Sum P(3) = 4.4e-16
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 203 AVIPYEPKTMNAGPVILSGG--QAYTLHGEYAVP 234
A P+ +M P L G +AYT+ G+YA+P
Sbjct: 207 ASFPHTTPSMCLNPD-LEGPPLEAYTIQGQYAIP 239
>UNIPROTKB|H3BRU6 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 Ensembl:ENST00000562264 Uniprot:H3BRU6
Length = 301
Score = 309 (113.8 bits), Expect = 4.0e-50, Sum P(3) = 4.0e-50
Identities = 63/123 (51%), Positives = 82/123 (66%)
Query: 107 EDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPM 166
ED + S P+ L+LV+PA+ CGSLIGKGGCKIK+IR+ +GA VQVA DMLP
Sbjct: 62 EDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN 121
Query: 167 STERIVTVHGNPDTISQAIYQICLVLIECTLQVV-KGAVIPYEPKTMNAGPVILSGGQAY 225
STER +T+ G P +I + + QIC+V++E Q KG IPY PK ++ PVI +GGQ
Sbjct: 122 STERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPKP-SSSPVIFAGGQLT 180
Query: 226 TLH 228
LH
Sbjct: 181 KLH 183
Score = 145 (56.1 bits), Expect = 4.0e-50, Sum P(3) = 4.0e-50
Identities = 31/74 (41%), Positives = 45/74 (60%)
Query: 280 GKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQG 338
G D E+ + +D+ GC+IG+ G+++ EIRQ+SGAQI I E S + I G
Sbjct: 216 GLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITG 275
Query: 339 CQEAVSLAQYLINM 352
++SLAQYLIN+
Sbjct: 276 SAASISLAQYLINV 289
Score = 115 (45.5 bits), Expect = 6.9e-10, Sum P(2) = 6.9e-10
Identities = 28/71 (39%), Positives = 43/71 (60%)
Query: 118 NCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGN 177
+ S Q +L IP G +IG+ G KI +IR +SGA +++A+ + ST+R VT+ G+
Sbjct: 218 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV-EGSTDRQVTITGS 276
Query: 178 PDTISQAIYQI 188
+IS A Y I
Sbjct: 277 AASISLAQYLI 287
Score = 96 (38.9 bits), Expect = 4.0e-50, Sum P(3) = 4.0e-50
Identities = 17/35 (48%), Positives = 28/35 (80%)
Query: 29 EISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
E+ +IG G V+++R+ESGA+I+I++G CP+RI
Sbjct: 5 EVGSIIGKKGESVKKMREESGARINISEGNCPERI 39
Score = 89 (36.4 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 28/104 (26%), Positives = 50/104 (48%)
Query: 136 GSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIE- 194
GS+IGK G +K +R+ SGA + ++ P ERI+T+ G + I +A I L E
Sbjct: 7 GSIIGKKGESVKKMREESGARINISEGNCP---ERIITLAGPTNAIFKAFAMIIDKLEED 63
Query: 195 CTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEV 238
+ + P T+ +++ Q +L G+ ++E+
Sbjct: 64 ISSSMTNSTAASRPPVTLR---LVVPASQCGSLIGKGGCKIKEI 104
Score = 69 (29.3 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPD 61
V ++ LIG GGC ++ +R+ +GA++ + P+
Sbjct: 85 VPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN 121
Score = 67 (28.6 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI 323
V +V+ G +IGK G ++ EIR+ +GAQ+ +
Sbjct: 79 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 114
>UNIPROTKB|Q3SYT9 [details] [associations]
symbol:PCBP2 "Poly(RC) binding protein 2" species:9913 "Bos
taurus" [GO:0050687 "negative regulation of defense response to
virus" evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0031625 "ubiquitin
protein ligase binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0043161 GO:GO:0003723
GO:GO:0050687 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
HOGENOM:HOG000182823 HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K CTD:5094
KO:K13162 OMA:CVVMLEL EMBL:DAAA02012861 EMBL:DAAA02012860
EMBL:BC103397 IPI:IPI00696193 RefSeq:NP_001029883.1
UniGene:Bt.49118 SMR:Q3SYT9 STRING:Q3SYT9
Ensembl:ENSBTAT00000027662 GeneID:540653 KEGG:bta:540653
InParanoid:Q3SYT9 NextBio:20878753 Uniprot:Q3SYT9
Length = 349
Score = 296 (109.3 bits), Expect = 4.0e-50, Sum P(3) = 4.0e-50
Identities = 60/117 (51%), Positives = 79/117 (67%)
Query: 107 EDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPM 166
ED + S P+ L+LV+PA+ CGSLIGKGGCKIK+IR+ +GA VQVA DMLP
Sbjct: 81 EDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN 140
Query: 167 STERIVTVHGNPDTISQAIYQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSGGQ 223
STER +T+ G P +I + + QIC+V++E KG IPY PK ++ PVI +GGQ
Sbjct: 141 STERAITIAGIPQSIIECVKQICVVMLESP---PKGVTIPYRPKP-SSSPVIFAGGQ 193
Score = 149 (57.5 bits), Expect = 4.0e-50, Sum P(3) = 4.0e-50
Identities = 32/76 (42%), Positives = 46/76 (60%)
Query: 278 SGGKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHI 336
S G D E+ + +D+ GC+IG+ G+++ EIRQ+SGAQI I E S + I
Sbjct: 262 SAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTI 321
Query: 337 QGCQEAVSLAQYLINM 352
G ++SLAQYLIN+
Sbjct: 322 TGSAASISLAQYLINV 337
Score = 115 (45.5 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 28/71 (39%), Positives = 43/71 (60%)
Query: 118 NCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGN 177
+ S Q +L IP G +IG+ G KI +IR +SGA +++A+ + ST+R VT+ G+
Sbjct: 266 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV-EGSTDRQVTITGS 324
Query: 178 PDTISQAIYQI 188
+IS A Y I
Sbjct: 325 AASISLAQYLI 335
Score = 105 (42.0 bits), Expect = 4.0e-50, Sum P(3) = 4.0e-50
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 15 ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
+T+R L H E+ +IG G V+++R+ESGA+I+I++G CP+RI
Sbjct: 14 LTIRLLMHGK----EVGSIIGKKGESVKKMREESGARINISEGNCPERI 58
Score = 98 (39.6 bits), Expect = 8.9e-14, Sum P(2) = 8.9e-14
Identities = 30/116 (25%), Positives = 56/116 (48%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQ 183
L ++L++ GS+IGK G +K +R+ SGA + ++ P ERI+T+ G + I +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCP---ERIITLAGPTNAIFK 70
Query: 184 AIYQICLVLIE-CTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEV 238
A I L E + + P T+ +++ Q +L G+ ++E+
Sbjct: 71 AFAMIIDKLEEDISSSMTNSTAASRPPVTLR---LVVPASQCGSLIGKGGCKIKEI 123
Score = 69 (29.3 bits), Expect = 1.9e-12, Sum P(3) = 1.9e-12
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPD 61
V ++ LIG GGC ++ +R+ +GA++ + P+
Sbjct: 104 VPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN 140
Score = 67 (28.6 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI 323
V +V+ G +IGK G ++ EIR+ +GAQ+ +
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
Score = 51 (23.0 bits), Expect = 4.1e-16, Sum P(3) = 4.1e-16
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 203 AVIPYEPKTMNAGPVILSGG--QAYTLHGEYAVP 234
A P+ +M P L G +AYT+ G+YA+P
Sbjct: 203 ASFPHTTPSMCLNPD-LEGPPLEAYTIQGQYAIP 235
>UNIPROTKB|Q5E9A3 [details] [associations]
symbol:PCBP1 "Poly(rC)-binding protein 1" species:9913 "Bos
taurus" [GO:0003697 "single-stranded DNA binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
EMBL:BT021017 IPI:IPI00687560 RefSeq:NP_001015565.1 UniGene:Bt.4620
ProteinModelPortal:Q5E9A3 SMR:Q5E9A3 MINT:MINT-6732977
STRING:Q5E9A3 PRIDE:Q5E9A3 Ensembl:ENSBTAT00000011824 GeneID:509917
KEGG:bta:509917 CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520
InParanoid:Q5E9A3 KO:K12889 OMA:RNISERN OrthoDB:EOG46WZ8K
NextBio:20869194 Uniprot:Q5E9A3
Length = 356
Score = 305 (112.4 bits), Expect = 5.0e-50, Sum P(3) = 5.0e-50
Identities = 66/145 (45%), Positives = 93/145 (64%)
Query: 83 PGHTLWVTSVDN-VCTAYNFMCRSLE-DYHINRNRMENCSPQPLQLKLVIPATHCGSLIG 140
P + +T N + A+ + LE D + + S P+ L+LV+PAT CGSLIG
Sbjct: 55 PERIITLTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIG 114
Query: 141 KGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVV 200
KGGCKIK+IR+ +GA VQVA DMLP STER +T+ G P ++++ + QICLV++E Q
Sbjct: 115 KGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSP 174
Query: 201 KGAV--IPYEPKTMNAGPVILSGGQ 223
+G V IPY+P ++ PVI +GGQ
Sbjct: 175 QGRVMTIPYQPMPASS-PVICAGGQ 198
Score = 136 (52.9 bits), Expect = 5.0e-50, Sum P(3) = 5.0e-50
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 291 EIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQGCQEAVSLAQYL 349
E+ + +++ GC+IG+ G+ + EIRQ+SGAQI I E S + I G ++SLAQYL
Sbjct: 283 ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYL 342
Query: 350 INMCIELQK 358
IN + +K
Sbjct: 343 INARLSSEK 351
Score = 108 (43.1 bits), Expect = 5.0e-50, Sum P(3) = 5.0e-50
Identities = 22/49 (44%), Positives = 34/49 (69%)
Query: 15 ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
+T+R L H E+ +IG G V+R+R+ESGA+I+I++G CP+RI
Sbjct: 14 LTIRLLMHGK----EVGSIIGKKGESVKRIREESGARINISEGNCPERI 58
Score = 99 (39.9 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIY 186
+L IP G +IG+ G I +IR +SGA +++A+ + S+ R VT+ G+ +IS A Y
Sbjct: 283 ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPV-EGSSGRQVTITGSAASISLAQY 341
Query: 187 QI 188
I
Sbjct: 342 LI 343
Score = 97 (39.2 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 31/116 (26%), Positives = 55/116 (47%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQ 183
L ++L++ GS+IGK G +K IR+ SGA + ++ P ERI+T+ G + I +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCP---ERIITLTGPTNAIFK 70
Query: 184 AIYQICLVLIE-CTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEV 238
A I L E + P T+ +++ Q +L G+ ++E+
Sbjct: 71 AFAMIIDKLEEDINSSMTNSTAASRPPVTLR---LVVPATQCGSLIGKGGCKIKEI 123
Score = 68 (29.0 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPD 61
V + LIG GGC ++ +R+ +GA++ + P+
Sbjct: 104 VPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN 140
Score = 66 (28.3 bits), Expect = 9.6e-06, Sum P(2) = 9.6e-06
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI 323
V +V+ G +IGK G ++ EIR+ +GAQ+ +
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV 133
>UNIPROTKB|J9P7Y9 [details] [associations]
symbol:PCBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 CTD:5093
KO:K12889 OMA:RNISERN EMBL:AAEX03007630 RefSeq:XP_538537.1
Ensembl:ENSCAFT00000005324 GeneID:481417 KEGG:cfa:481417
Uniprot:J9P7Y9
Length = 356
Score = 305 (112.4 bits), Expect = 5.0e-50, Sum P(3) = 5.0e-50
Identities = 66/145 (45%), Positives = 93/145 (64%)
Query: 83 PGHTLWVTSVDN-VCTAYNFMCRSLE-DYHINRNRMENCSPQPLQLKLVIPATHCGSLIG 140
P + +T N + A+ + LE D + + S P+ L+LV+PAT CGSLIG
Sbjct: 55 PERIITLTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIG 114
Query: 141 KGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVV 200
KGGCKIK+IR+ +GA VQVA DMLP STER +T+ G P ++++ + QICLV++E Q
Sbjct: 115 KGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSP 174
Query: 201 KGAV--IPYEPKTMNAGPVILSGGQ 223
+G V IPY+P ++ PVI +GGQ
Sbjct: 175 QGRVMTIPYQPMPASS-PVICAGGQ 198
Score = 136 (52.9 bits), Expect = 5.0e-50, Sum P(3) = 5.0e-50
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 291 EIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQGCQEAVSLAQYL 349
E+ + +++ GC+IG+ G+ + EIRQ+SGAQI I E S + I G ++SLAQYL
Sbjct: 283 ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYL 342
Query: 350 INMCIELQK 358
IN + +K
Sbjct: 343 INARLSSEK 351
Score = 108 (43.1 bits), Expect = 5.0e-50, Sum P(3) = 5.0e-50
Identities = 22/49 (44%), Positives = 34/49 (69%)
Query: 15 ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
+T+R L H E+ +IG G V+R+R+ESGA+I+I++G CP+RI
Sbjct: 14 LTIRLLMHGK----EVGSIIGKKGESVKRIREESGARINISEGNCPERI 58
Score = 99 (39.9 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIY 186
+L IP G +IG+ G I +IR +SGA +++A+ + S+ R VT+ G+ +IS A Y
Sbjct: 283 ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPV-EGSSGRQVTITGSAASISLAQY 341
Query: 187 QI 188
I
Sbjct: 342 LI 343
Score = 97 (39.2 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 31/116 (26%), Positives = 55/116 (47%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQ 183
L ++L++ GS+IGK G +K IR+ SGA + ++ P ERI+T+ G + I +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCP---ERIITLTGPTNAIFK 70
Query: 184 AIYQICLVLIE-CTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEV 238
A I L E + P T+ +++ Q +L G+ ++E+
Sbjct: 71 AFAMIIDKLEEDINSSMTNSTAASRPPVTLR---LVVPATQCGSLIGKGGCKIKEI 123
Score = 68 (29.0 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPD 61
V + LIG GGC ++ +R+ +GA++ + P+
Sbjct: 104 VPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN 140
Score = 66 (28.3 bits), Expect = 9.6e-06, Sum P(2) = 9.6e-06
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI 323
V +V+ G +IGK G ++ EIR+ +GAQ+ +
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV 133
>UNIPROTKB|Q15365 [details] [associations]
symbol:PCBP1 "Poly(rC)-binding protein 1" species:9606
"Homo sapiens" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=NAS] [GO:0005737 "cytoplasm" evidence=NAS]
[GO:0016071 "mRNA metabolic process" evidence=NAS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] Reactome:REACT_71
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0003723 GO:GO:0003697 GO:GO:0030529 GO:GO:0000398
eggNOG:NOG315872 CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520
KO:K12889 OMA:RNISERN OrthoDB:EOG46WZ8K EMBL:X78137 EMBL:U24223
EMBL:Z29505 EMBL:BC039742 IPI:IPI00016610 RefSeq:NP_006187.2
UniGene:Hs.2853 PDB:1WVN PDB:1ZTG PDB:3VKE PDBsum:1WVN PDBsum:1ZTG
PDBsum:3VKE ProteinModelPortal:Q15365 SMR:Q15365 DIP:DIP-38136N
IntAct:Q15365 MINT:MINT-96267 STRING:Q15365 PhosphoSite:Q15365
DMDM:42560548 OGP:Q15365 REPRODUCTION-2DPAGE:IPI00016610
UCD-2DPAGE:Q15365 PaxDb:Q15365 PeptideAtlas:Q15365 PRIDE:Q15365
DNASU:5093 Ensembl:ENST00000303577 GeneID:5093 KEGG:hsa:5093
UCSC:uc002sgf.3 GeneCards:GC02P070314 HGNC:HGNC:8647 HPA:CAB037113
MIM:601209 neXtProt:NX_Q15365 PharmGKB:PA32986 InParanoid:Q15365
PhylomeDB:Q15365 ChiTaRS:PCBP1 EvolutionaryTrace:Q15365
GenomeRNAi:5093 NextBio:19644 ArrayExpress:Q15365 Bgee:Q15365
CleanEx:HS_PCBP1 Genevestigator:Q15365 GermOnline:ENSG00000169564
Uniprot:Q15365
Length = 356
Score = 305 (112.4 bits), Expect = 5.0e-50, Sum P(3) = 5.0e-50
Identities = 66/145 (45%), Positives = 93/145 (64%)
Query: 83 PGHTLWVTSVDN-VCTAYNFMCRSLE-DYHINRNRMENCSPQPLQLKLVIPATHCGSLIG 140
P + +T N + A+ + LE D + + S P+ L+LV+PAT CGSLIG
Sbjct: 55 PERIITLTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIG 114
Query: 141 KGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVV 200
KGGCKIK+IR+ +GA VQVA DMLP STER +T+ G P ++++ + QICLV++E Q
Sbjct: 115 KGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSP 174
Query: 201 KGAV--IPYEPKTMNAGPVILSGGQ 223
+G V IPY+P ++ PVI +GGQ
Sbjct: 175 QGRVMTIPYQPMPASS-PVICAGGQ 198
Score = 136 (52.9 bits), Expect = 5.0e-50, Sum P(3) = 5.0e-50
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 291 EIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQGCQEAVSLAQYL 349
E+ + +++ GC+IG+ G+ + EIRQ+SGAQI I E S + I G ++SLAQYL
Sbjct: 283 ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYL 342
Query: 350 INMCIELQK 358
IN + +K
Sbjct: 343 INARLSSEK 351
Score = 108 (43.1 bits), Expect = 5.0e-50, Sum P(3) = 5.0e-50
Identities = 22/49 (44%), Positives = 34/49 (69%)
Query: 15 ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
+T+R L H E+ +IG G V+R+R+ESGA+I+I++G CP+RI
Sbjct: 14 LTIRLLMHGK----EVGSIIGKKGESVKRIREESGARINISEGNCPERI 58
Score = 99 (39.9 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIY 186
+L IP G +IG+ G I +IR +SGA +++A+ + S+ R VT+ G+ +IS A Y
Sbjct: 283 ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPV-EGSSGRQVTITGSAASISLAQY 341
Query: 187 QI 188
I
Sbjct: 342 LI 343
Score = 97 (39.2 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 31/116 (26%), Positives = 55/116 (47%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQ 183
L ++L++ GS+IGK G +K IR+ SGA + ++ P ERI+T+ G + I +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCP---ERIITLTGPTNAIFK 70
Query: 184 AIYQICLVLIE-CTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEV 238
A I L E + P T+ +++ Q +L G+ ++E+
Sbjct: 71 AFAMIIDKLEEDINSSMTNSTAASRPPVTLR---LVVPATQCGSLIGKGGCKIKEI 123
Score = 68 (29.0 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPD 61
V + LIG GGC ++ +R+ +GA++ + P+
Sbjct: 104 VPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN 140
Score = 66 (28.3 bits), Expect = 9.6e-06, Sum P(2) = 9.6e-06
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI 323
V +V+ G +IGK G ++ EIR+ +GAQ+ +
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV 133
>UNIPROTKB|I3LEC2 [details] [associations]
symbol:PCBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GO:GO:0003697 GeneTree:ENSGT00550000074311 KO:K12889
OMA:RNISERN EMBL:CU928518 RefSeq:XP_003125105.1
Ensembl:ENSSSCT00000028976 GeneID:100511501 KEGG:ssc:100511501
Uniprot:I3LEC2
Length = 356
Score = 305 (112.4 bits), Expect = 5.0e-50, Sum P(3) = 5.0e-50
Identities = 66/145 (45%), Positives = 93/145 (64%)
Query: 83 PGHTLWVTSVDN-VCTAYNFMCRSLE-DYHINRNRMENCSPQPLQLKLVIPATHCGSLIG 140
P + +T N + A+ + LE D + + S P+ L+LV+PAT CGSLIG
Sbjct: 55 PERIITLTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIG 114
Query: 141 KGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVV 200
KGGCKIK+IR+ +GA VQVA DMLP STER +T+ G P ++++ + QICLV++E Q
Sbjct: 115 KGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSP 174
Query: 201 KGAV--IPYEPKTMNAGPVILSGGQ 223
+G V IPY+P ++ PVI +GGQ
Sbjct: 175 QGRVMTIPYQPMPASS-PVICAGGQ 198
Score = 136 (52.9 bits), Expect = 5.0e-50, Sum P(3) = 5.0e-50
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 291 EIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQGCQEAVSLAQYL 349
E+ + +++ GC+IG+ G+ + EIRQ+SGAQI I E S + I G ++SLAQYL
Sbjct: 283 ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYL 342
Query: 350 INMCIELQK 358
IN + +K
Sbjct: 343 INARLSSEK 351
Score = 108 (43.1 bits), Expect = 5.0e-50, Sum P(3) = 5.0e-50
Identities = 22/49 (44%), Positives = 34/49 (69%)
Query: 15 ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
+T+R L H E+ +IG G V+R+R+ESGA+I+I++G CP+RI
Sbjct: 14 LTIRLLMHGK----EVGSIIGKKGESVKRIREESGARINISEGNCPERI 58
Score = 99 (39.9 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIY 186
+L IP G +IG+ G I +IR +SGA +++A+ + S+ R VT+ G+ +IS A Y
Sbjct: 283 ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPV-EGSSGRQVTITGSAASISLAQY 341
Query: 187 QI 188
I
Sbjct: 342 LI 343
Score = 97 (39.2 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 31/116 (26%), Positives = 55/116 (47%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQ 183
L ++L++ GS+IGK G +K IR+ SGA + ++ P ERI+T+ G + I +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCP---ERIITLTGPTNAIFK 70
Query: 184 AIYQICLVLIE-CTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEV 238
A I L E + P T+ +++ Q +L G+ ++E+
Sbjct: 71 AFAMIIDKLEEDINSSMTNSTAASRPPVTLR---LVVPATQCGSLIGKGGCKIKEI 123
Score = 68 (29.0 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPD 61
V + LIG GGC ++ +R+ +GA++ + P+
Sbjct: 104 VPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN 140
Score = 66 (28.3 bits), Expect = 9.6e-06, Sum P(2) = 9.6e-06
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI 323
V +V+ G +IGK G ++ EIR+ +GAQ+ +
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV 133
>MGI|MGI:1345635 [details] [associations]
symbol:Pcbp1 "poly(rC) binding protein 1" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0008494 "translation activator
activity" evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=TAS] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:1345635 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 GO:GO:0008494 GO:GO:0003697
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K12889
OMA:RNISERN OrthoDB:EOG46WZ8K ChiTaRS:PCBP1 EMBL:AF139894
EMBL:AF139895 EMBL:BC069915 EMBL:BC004793 IPI:IPI00128904
RefSeq:NP_035995.1 UniGene:Mm.274146 ProteinModelPortal:P60335
SMR:P60335 IntAct:P60335 STRING:P60335 PhosphoSite:P60335
REPRODUCTION-2DPAGE:IPI00128904 REPRODUCTION-2DPAGE:P60335
PaxDb:P60335 PRIDE:P60335 Ensembl:ENSMUST00000053015 GeneID:23983
KEGG:mmu:23983 InParanoid:P60335 NextBio:303869 Bgee:P60335
CleanEx:MM_PCBP1 Genevestigator:P60335
GermOnline:ENSMUSG00000051695 Uniprot:P60335
Length = 356
Score = 305 (112.4 bits), Expect = 5.0e-50, Sum P(3) = 5.0e-50
Identities = 66/145 (45%), Positives = 93/145 (64%)
Query: 83 PGHTLWVTSVDN-VCTAYNFMCRSLE-DYHINRNRMENCSPQPLQLKLVIPATHCGSLIG 140
P + +T N + A+ + LE D + + S P+ L+LV+PAT CGSLIG
Sbjct: 55 PERIITLTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIG 114
Query: 141 KGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVV 200
KGGCKIK+IR+ +GA VQVA DMLP STER +T+ G P ++++ + QICLV++E Q
Sbjct: 115 KGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSP 174
Query: 201 KGAV--IPYEPKTMNAGPVILSGGQ 223
+G V IPY+P ++ PVI +GGQ
Sbjct: 175 QGRVMTIPYQPMPASS-PVICAGGQ 198
Score = 136 (52.9 bits), Expect = 5.0e-50, Sum P(3) = 5.0e-50
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 291 EIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQGCQEAVSLAQYL 349
E+ + +++ GC+IG+ G+ + EIRQ+SGAQI I E S + I G ++SLAQYL
Sbjct: 283 ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYL 342
Query: 350 INMCIELQK 358
IN + +K
Sbjct: 343 INARLSSEK 351
Score = 108 (43.1 bits), Expect = 5.0e-50, Sum P(3) = 5.0e-50
Identities = 22/49 (44%), Positives = 34/49 (69%)
Query: 15 ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
+T+R L H E+ +IG G V+R+R+ESGA+I+I++G CP+RI
Sbjct: 14 LTIRLLMHGK----EVGSIIGKKGESVKRIREESGARINISEGNCPERI 58
Score = 99 (39.9 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIY 186
+L IP G +IG+ G I +IR +SGA +++A+ + S+ R VT+ G+ +IS A Y
Sbjct: 283 ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPV-EGSSGRQVTITGSAASISLAQY 341
Query: 187 QI 188
I
Sbjct: 342 LI 343
Score = 97 (39.2 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 31/116 (26%), Positives = 55/116 (47%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQ 183
L ++L++ GS+IGK G +K IR+ SGA + ++ P ERI+T+ G + I +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCP---ERIITLTGPTNAIFK 70
Query: 184 AIYQICLVLIE-CTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEV 238
A I L E + P T+ +++ Q +L G+ ++E+
Sbjct: 71 AFAMIIDKLEEDINSSMTNSTAASRPPVTLR---LVVPATQCGSLIGKGGCKIKEI 123
Score = 68 (29.0 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPD 61
V + LIG GGC ++ +R+ +GA++ + P+
Sbjct: 104 VPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN 140
Score = 66 (28.3 bits), Expect = 9.6e-06, Sum P(2) = 9.6e-06
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI 323
V +V+ G +IGK G ++ EIR+ +GAQ+ +
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV 133
>RGD|1561319 [details] [associations]
symbol:Pcbp1 "poly(rC) binding protein 1" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1561319 GO:GO:0003723 GO:GO:0003697 OMA:RNISERN
OrthoDB:EOG46WZ8K IPI:IPI00882480 ProteinModelPortal:D3ZS68
SMR:D3ZS68 PRIDE:D3ZS68 Ensembl:ENSRNOT00000023806 UCSC:RGD:1561319
Uniprot:D3ZS68
Length = 356
Score = 305 (112.4 bits), Expect = 5.0e-50, Sum P(3) = 5.0e-50
Identities = 66/145 (45%), Positives = 93/145 (64%)
Query: 83 PGHTLWVTSVDN-VCTAYNFMCRSLE-DYHINRNRMENCSPQPLQLKLVIPATHCGSLIG 140
P + +T N + A+ + LE D + + S P+ L+LV+PAT CGSLIG
Sbjct: 55 PERIITLTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIG 114
Query: 141 KGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVV 200
KGGCKIK+IR+ +GA VQVA DMLP STER +T+ G P ++++ + QICLV++E Q
Sbjct: 115 KGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSP 174
Query: 201 KGAV--IPYEPKTMNAGPVILSGGQ 223
+G V IPY+P ++ PVI +GGQ
Sbjct: 175 QGRVMTIPYQPMPASS-PVICAGGQ 198
Score = 136 (52.9 bits), Expect = 5.0e-50, Sum P(3) = 5.0e-50
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 291 EIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQGCQEAVSLAQYL 349
E+ + +++ GC+IG+ G+ + EIRQ+SGAQI I E S + I G ++SLAQYL
Sbjct: 283 ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYL 342
Query: 350 INMCIELQK 358
IN + +K
Sbjct: 343 INARLSSEK 351
Score = 108 (43.1 bits), Expect = 5.0e-50, Sum P(3) = 5.0e-50
Identities = 22/49 (44%), Positives = 34/49 (69%)
Query: 15 ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
+T+R L H E+ +IG G V+R+R+ESGA+I+I++G CP+RI
Sbjct: 14 LTIRLLMHGK----EVGSIIGKKGESVKRIREESGARINISEGNCPERI 58
Score = 99 (39.9 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIY 186
+L IP G +IG+ G I +IR +SGA +++A+ + S+ R VT+ G+ +IS A Y
Sbjct: 283 ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPV-EGSSGRQVTITGSAASISLAQY 341
Query: 187 QI 188
I
Sbjct: 342 LI 343
Score = 97 (39.2 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 31/116 (26%), Positives = 55/116 (47%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQ 183
L ++L++ GS+IGK G +K IR+ SGA + ++ P ERI+T+ G + I +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCP---ERIITLTGPTNAIFK 70
Query: 184 AIYQICLVLIE-CTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEV 238
A I L E + P T+ +++ Q +L G+ ++E+
Sbjct: 71 AFAMIIDKLEEDINSSMTNSTAASRPPVTLR---LVVPATQCGSLIGKGGCKIKEI 123
Score = 68 (29.0 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPD 61
V + LIG GGC ++ +R+ +GA++ + P+
Sbjct: 104 VPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN 140
Score = 66 (28.3 bits), Expect = 9.6e-06, Sum P(2) = 9.6e-06
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI 323
V +V+ G +IGK G ++ EIR+ +GAQ+ +
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV 133
>UNIPROTKB|C9J0A4 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00385206 ProteinModelPortal:C9J0A4 SMR:C9J0A4
STRING:C9J0A4 Ensembl:ENST00000471622 ArrayExpress:C9J0A4
Bgee:C9J0A4 Uniprot:C9J0A4
Length = 323
Score = 301 (111.0 bits), Expect = 1.0e-49, Sum P(3) = 1.0e-49
Identities = 66/127 (51%), Positives = 85/127 (66%)
Query: 118 NCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGN 177
N S P+ L+LVIPA+ CGSLIGK G KIK+IR+ +GA VQVA D+LP STER VTV G
Sbjct: 96 NVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGV 155
Query: 178 PDTISQAIYQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEY-AVPVQ 236
PD I + QIC V++E KGA IPY P +++ G V+LS Q +++ G+Y AV
Sbjct: 156 PDAIILCVRQICAVILESP---PKGATIPYHP-SLSLGTVLLSANQGFSVQGQYGAVTPA 211
Query: 237 EVAGKKQ 243
EV +Q
Sbjct: 212 EVTKLQQ 218
Score = 134 (52.2 bits), Expect = 1.0e-49, Sum P(3) = 1.0e-49
Identities = 30/72 (41%), Positives = 44/72 (61%)
Query: 280 GKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQG 338
G D G E ++ +D+ GCVIG+ GS++ EIRQ+SGA I I E + ++ I G
Sbjct: 234 GLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITG 293
Query: 339 CQEAVSLAQYLI 350
+++LAQYLI
Sbjct: 294 SPVSIALAQYLI 305
Score = 111 (44.1 bits), Expect = 1.0e-49, Sum P(3) = 1.0e-49
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 1 MDGNGDGKIDEDTL---ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDG 57
M G+ G +E L +T+R L H E+ +IG G V+R+R++S A+I+I++G
Sbjct: 1 MSGSDGGLEEEPELSITLTLRMLMHGK----EVGSIIGKKGETVKRIREQSSARITISEG 56
Query: 58 ACPDRI 63
+CP+RI
Sbjct: 57 SCPERI 62
Score = 106 (42.4 bits), Expect = 5.3e-13, Sum P(2) = 5.3e-13
Identities = 31/117 (26%), Positives = 55/117 (47%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQ 183
L L++++ GS+IGK G +K IR+ S A + ++ P ERI T+ G+ +
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCP---ERITTITGSTAAVFH 74
Query: 184 AIYQICLVLIE--CTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEV 238
A+ I L E C G + P T+ +++ Q +L G+ ++E+
Sbjct: 75 AVSMIAFKLDEDLCAAPA-NGGNVSRPPVTLR---LVIPASQCGSLIGKAGTKIKEI 127
Score = 98 (39.6 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIY 186
+ ++P G +IG+ G KI +IR +SGA++++ + + ER VT+ G+P +I+ A Y
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQA-EGAGERHVTITGSPVSIALAQY 303
Query: 187 QI 188
I
Sbjct: 304 LI 305
Score = 77 (32.2 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGT--ESHKKMFHIQGCQEAVSL 345
V +V+ G +IGKAG+++ EIR+ +GAQ+ + S ++ + G +A+ L
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 161
Score = 53 (23.7 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 14/58 (24%), Positives = 29/58 (50%)
Query: 4 NGDGKIDEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPD 61
NG G + +T+R + +S + LIG G ++ +R+ +GA++ + P+
Sbjct: 93 NG-GNVSRPP-VTLRLVIPAS----QCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPN 144
>UNIPROTKB|J3QT27 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AJ011931 EMBL:AJ239328
EMBL:AL133492 EMBL:AL133493 EMBL:AL592528 HGNC:HGNC:8651
ChiTaRS:PCBP3 ProteinModelPortal:J3QT27 Ensembl:ENST00000400305
Uniprot:J3QT27
Length = 322
Score = 258 (95.9 bits), Expect = 2.3e-48, Sum P(3) = 2.3e-48
Identities = 56/119 (47%), Positives = 76/119 (63%)
Query: 83 PGHTLWVTS-VDNVCTAYNFMCRSLEDYHINR-NRMENCSPQPLQLKLVIPATHCGSLIG 140
P + +T D + A+ + E+ IN + S P+ L+LV+PA+ CGSLIG
Sbjct: 63 PERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIG 122
Query: 141 KGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIEC-TLQ 198
KGG KIK+IR+ +GA VQVA DMLP STER VT+ G PD I Q + QIC+V++E T+Q
Sbjct: 123 KGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLEAYTIQ 181
Score = 171 (65.3 bits), Expect = 2.3e-48, Sum P(3) = 2.3e-48
Identities = 45/137 (32%), Positives = 68/137 (49%)
Query: 223 QAYTLHGEYAVP-------VQEVAGKKQPHPLAGLAVLGIEGIXXXXXXXXXXXXXXXXR 275
+AYT+ G+YA+P + ++A ++ P P G G
Sbjct: 176 EAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMG-- 233
Query: 276 VKSGGKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMF 334
+S G D E+ + +D+ GC+IG+ G+++ EIRQ+SGAQI I TE S ++
Sbjct: 234 -QSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQI 292
Query: 335 HIQGCQEAVSLAQYLIN 351
I G +SLAQYLIN
Sbjct: 293 TITGTPANISLAQYLIN 309
Score = 116 (45.9 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 28/71 (39%), Positives = 41/71 (57%)
Query: 118 NCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGN 177
+ SP +L IP G +IG+ G KI +IR +SGA +++A+ S+ER +T+ G
Sbjct: 239 DASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIAN-ATEGSSERQITITGT 297
Query: 178 PDTISQAIYQI 188
P IS A Y I
Sbjct: 298 PANISLAQYLI 308
Score = 109 (43.4 bits), Expect = 2.3e-48, Sum P(3) = 2.3e-48
Identities = 24/61 (39%), Positives = 39/61 (63%)
Query: 6 DGKIDEDTL---ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDR 62
+ K+ E L +T+R L H E+ +IG G V+++R+ESGA+I+I++G CP+R
Sbjct: 10 ESKVSEGGLNVTLTIRLLMHGK----EVGSIIGKKGETVKKMREESGARINISEGNCPER 65
Query: 63 I 63
I
Sbjct: 66 I 66
Score = 104 (41.7 bits), Expect = 3.0e-17, Sum P(2) = 3.0e-17
Identities = 31/116 (26%), Positives = 57/116 (49%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQ 183
L ++L++ GS+IGK G +K +R+ SGA + ++ P ERIVT+ G D I +
Sbjct: 22 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCP---ERIVTITGPTDAIFK 78
Query: 184 AIYQICLVLIECTLQVVKGAVIPYEPK-TMNAGPVILSGGQAYTLHGEYAVPVQEV 238
A I E + + + +P T+ +++ Q +L G+ ++E+
Sbjct: 79 AFAMIAYKFEEDIINSMSNSPATSKPPVTLR---LVVPASQCGSLIGKGGSKIKEI 131
Score = 75 (31.5 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 20/69 (28%), Positives = 36/69 (52%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGT--ESHKKMFHIQGCQEAVSL 345
V +V+ G +IGK GS++ EIR+ +GAQ+ + S ++ I G +A+
Sbjct: 106 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAI-- 163
Query: 346 AQYLINMCI 354
Q + +C+
Sbjct: 164 IQCVKQICV 172
Score = 59 (25.8 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPD 61
V ++ LIG GG ++ +R+ +GA++ + P+
Sbjct: 112 VPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPN 148
>ZFIN|ZDB-GENE-070424-78 [details] [associations]
symbol:zgc:162999 "zgc:162999" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
Pfam:PF13014 PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-070424-78
GO:GO:0003723 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 EMBL:BC135088 IPI:IPI00845944
RefSeq:NP_001083021.1 UniGene:Dr.122660 ProteinModelPortal:A4IGG5
SMR:A4IGG5 PRIDE:A4IGG5 GeneID:100038772 KEGG:dre:100038772
NextBio:20788560 Bgee:A4IGG5 Uniprot:A4IGG5
Length = 350
Score = 411 (149.7 bits), Expect = 4.2e-47, Sum P(2) = 4.2e-47
Identities = 112/282 (39%), Positives = 150/282 (53%)
Query: 83 PGHTLWVTS-VDNVCTAYNFMCRSLEDYHINR-NRMENCSPQPLQLKLVIPATHCGSLIG 140
P + +T D + A+ + E+ IN + + S P+ L+LV+PA+ CGSLIG
Sbjct: 57 PERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSQATSKPPVTLRLVVPASQCGSLIG 116
Query: 141 KGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVV 200
KGG KIK++R+ +GA VQVA DMLP STER VT+ G P+ I Q + QIC+V++E
Sbjct: 117 KGGSKIKEMRESTGAQVQVAGDMLPNSTERAVTISGTPEAIIQCVKQICVVMLESP---P 173
Query: 201 KGAVIPYEPKTMNAGPVILSGGQ--AYTLHGEYAVPVQEVAGKKQPHPLAGLAVLGIEGI 258
KGA IPY PK A PVI SGGQ A TL A ++ Q PL + G I
Sbjct: 174 KGATIPYRPKPATA-PVIFSGGQVRADTLT---APATANLSLLLQHQPLPAYTIQGQYAI 229
Query: 259 XXXXXXXXXXXXXXXXRVKSGGKDT----GDDF---VET-EIVLTDDIAGCVIGKAGSRL 310
S G+ T G D T E+ + +D+ GC+IG+ G+++
Sbjct: 230 PHPDLTKLHQLAMQQTPFTSLGQTTPAFPGVDASSQASTHELTIPNDLIGCIIGRQGTKI 289
Query: 311 LEIRQISGAQINIHTGTE-SHKKMFHIQGCQEAVSLAQYLIN 351
EIRQ+SGAQI I E S + I G +SLAQYLIN
Sbjct: 290 NEIRQMSGAQIKIANAMEGSSDRQITITGTPANISLAQYLIN 331
Score = 99 (39.9 bits), Expect = 4.2e-47, Sum P(2) = 4.2e-47
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 15 ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
+T+R L H E+ +IG G V+++R+ES A+I++++G CP+RI
Sbjct: 16 LTIRLLMHGK----EVGSIIGKKGETVKKMREESSARINVSEGNCPERI 60
>FB|FBgn0262737 [details] [associations]
symbol:mub "mushroom-body expressed" species:7227 "Drosophila
melanogaster" [GO:0017130 "poly(C) RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IC] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 EMBL:AE014296
GO:GO:0003723 GO:GO:0000381 GeneTree:ENSGT00550000074311 KO:K13162
EMBL:BT030417 RefSeq:NP_001163493.1 RefSeq:NP_001246873.1
UniGene:Dm.2502 SMR:A4IJ59 STRING:A4IJ59 EnsemblMetazoa:FBtr0301364
EnsemblMetazoa:FBtr0304980 GeneID:40436 KEGG:dme:Dmel_CG7437
CTD:40436 FlyBase:FBgn0262737 GenomeRNAi:40436 NextBio:818772
Uniprot:A4IJ59
Length = 557
Score = 382 (139.5 bits), Expect = 1.7e-45, Sum P(2) = 1.7e-45
Identities = 115/358 (32%), Positives = 173/358 (48%)
Query: 83 PGHTLWVTSVDN-VCTAYNFMCRSLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGK 141
P + V+ N + +A+ + + E++ N + + ++L++PA+ CGSLIGK
Sbjct: 65 PERIVTVSGTTNAIFSAFTLITKKFEEF----NDVGKVGKTQIPIRLIVPASQCGSLIGK 120
Query: 142 GGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVVK 201
G KIK+IR +G ++QVAS+MLP STER VT+ G+ + I+Q IYQICLV++E +
Sbjct: 121 SGSKIKEIRQTTGCSIQVASEMLPNSTERAVTLSGSAEQITQCIYQICLVMLESP---PR 177
Query: 202 GAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEVAGKKQPHPLAGLAVLGIEGIXXX 261
GA IPY PK GPVIL+ GQA+T+ G YAVP QEVA +PLA LA LG+ G+
Sbjct: 178 GATIPYRPKPQVTGPVILANGQAFTIQGNYAVPTQEVA----KNPLASLAALGLAGMNPA 233
Query: 262 XXXXXXXXXXXXXRVKSGGKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQI 321
+ + DF ++ + + AGS+L + AQ
Sbjct: 234 STGGINHTG----ELSASAARCQTDF-QSNL---GSAPAALAALAGSQLRTANPANRAQQ 285
Query: 322 NIHTGTESHKKMFHIQG-----CQEA--VSLAQYLINMCIELQKNNTTNT---SDNPEPA 371
H T S+ + I G E +S A I+ C E + NT T S NP+
Sbjct: 286 QQHEMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDSV 345
Query: 372 DLDAAISAFMTASVNSSLIEKPTPHP--GSMVTLGGLSELLANIAASNVKSTVQTTGA 427
L + ++L+E+ G+ G + +A + + T T GA
Sbjct: 346 ALAQYLINMSVELQKANLLEQAQSQQNGGAAAAPGAAAAGVAAVTGA-AAPTSATNGA 402
Score = 114 (45.2 bits), Expect = 1.7e-45, Sum P(2) = 1.7e-45
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 10 DEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
D +T+R + E+ +IG G IV R R+ESGAKI+I+DG+CP+RI
Sbjct: 19 DPSVTLTIRLIMQGK----EVGSIIGKKGEIVNRFREESGAKINISDGSCPERI 68
>UNIPROTKB|F1NPL4 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00571530 Ensembl:ENSGALT00000021482 ArrayExpress:F1NPL4
Uniprot:F1NPL4
Length = 326
Score = 353 (129.3 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
Identities = 73/154 (47%), Positives = 100/154 (64%)
Query: 83 PGHTLWVTS-VDNVCTAYNFMCRSLE-DYHINRNRMENCSPQPLQLKLVIPATHCGSLIG 140
P + +T D + A++ + E D + + S P+ L+LV+PA+ CGSLIG
Sbjct: 55 PERIVTITGPTDAIFKAFSMIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIG 114
Query: 141 KGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVV 200
KGG KIK+IR+ +GA VQVA DMLP STER VT+ G PD I Q + QIC+V++E
Sbjct: 115 KGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESP---P 171
Query: 201 KGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVP 234
KGA IPY PK +A P+I +GGQA+T+ G+YA+P
Sbjct: 172 KGATIPYRPKPASA-PIIFAGGQAFTIQGQYAIP 204
Score = 218 (81.8 bits), Expect = 9.5e-25, Sum P(2) = 9.5e-25
Identities = 59/153 (38%), Positives = 80/153 (52%)
Query: 201 KGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEVAGKKQPHP-LAGLAVLGIEGIX 259
KGA IPY PK +A P+I +GGQA+T+ G+YA+P HP L L L ++
Sbjct: 172 KGATIPYRPKPASA-PIIFAGGQAFTIQGQYAIP----------HPDLTKLHQLAMQ--- 217
Query: 260 XXXXXXXXXXXXXXXRVKSGGKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGA 319
V G D E+ + +D+ GC+IG+ GS++ EIRQ+SGA
Sbjct: 218 -HPPFTPLGQTTPGFPVPHIGLDATSPTSSHELTIPNDLIGCIIGRQGSKINEIRQMSGA 276
Query: 320 QINIHTGTE-SHKKMFHIQGCQEAVSLAQYLIN 351
QI I TE S ++ I G +SLAQYLIN
Sbjct: 277 QIKIANATEGSAERQVTITGSPANISLAQYLIN 309
Score = 116 (45.9 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
Identities = 25/61 (40%), Positives = 40/61 (65%)
Query: 6 DGKIDEDTL---ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDR 62
D K+ E L +T+R L H E+ +IG G V+++R+ESGA+I+I++G+CP+R
Sbjct: 2 DSKVSEGGLNVTLTIRLLMHGK----EVGSIIGKKGETVKKMREESGARINISEGSCPER 57
Query: 63 I 63
I
Sbjct: 58 I 58
Score = 115 (45.5 bits), Expect = 7.8e-12, Sum P(2) = 7.8e-12
Identities = 30/72 (41%), Positives = 41/72 (56%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIY 186
+L IP G +IG+ G KI +IR +SGA +++A+ S ER VT+ G+P IS A Y
Sbjct: 248 ELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIAN-ATEGSAERQVTITGSPANISLAQY 306
Query: 187 QICLVLIECTLQ 198
I C LQ
Sbjct: 307 LIN-ARANCKLQ 317
Score = 114 (45.2 bits), Expect = 0.00077, P = 0.00077
Identities = 33/116 (28%), Positives = 56/116 (48%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQ 183
L ++L++ GS+IGK G +K +R+ SGA + ++ P ERIVT+ G D I +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGSCP---ERIVTITGPTDAIFK 70
Query: 184 AIYQICLVLIE-CTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEV 238
A I L E + V P T+ +++ Q +L G+ ++E+
Sbjct: 71 AFSMIALKFEEDINASMTNSTVTSKPPVTLR---LVVPASQCGSLIGKGGSKIKEI 123
Score = 80 (33.2 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 26/114 (22%), Positives = 51/114 (44%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGT--ESHKKMFHIQGCQEAVSL 345
V +V+ G +IGK GS++ EIR+ +GAQ+ + S ++ I G +A+
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAI-- 155
Query: 346 AQYLINMCIELQKNNTTNTSD--NPEPADLDAAISAFMTASVNSSLIEKPTPHP 397
Q + +C+ + ++ + P+PA + ++ + PHP
Sbjct: 156 IQCVKQICVVMLESPPKGATIPYRPKPASAPIIFAGGQAFTIQG---QYAIPHP 206
Score = 59 (25.8 bits), Expect = 8.5e-19, Sum P(2) = 8.5e-19
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPD 61
V ++ LIG GG ++ +R+ +GA++ + P+
Sbjct: 104 VPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPN 140
Score = 38 (18.4 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 377 ISAFMTASVNSSLIEKPTPHPGSMVTLGGLSELLANIAASNVKSTVQTTGA 427
I+A MT NS++ KP +V L+ S +K ++TGA
Sbjct: 83 INASMT---NSTVTSKPPVTLRLVVPASQCGSLIGK-GGSKIKEIRESTGA 129
>UNIPROTKB|F8VWQ4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021922
ProteinModelPortal:F8VWQ4 SMR:F8VWQ4 PRIDE:F8VWQ4
Ensembl:ENST00000550927 ArrayExpress:F8VWQ4 Bgee:F8VWQ4
Uniprot:F8VWQ4
Length = 308
Score = 298 (110.0 bits), Expect = 9.5e-42, Sum P(2) = 9.5e-42
Identities = 59/105 (56%), Positives = 77/105 (73%)
Query: 120 SPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPD 179
S P+ L+LV+PA+ CGSLIGKGGCKIK+IR+ +GA VQVA DMLP STER +T+ G P
Sbjct: 36 SRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQ 95
Query: 180 TISQAIYQICLVLIECTLQVV-KGAVIPYEPKTMNAGPVILSGGQ 223
+I + + QIC+V++E Q KG IPY PK ++ PVI +GGQ
Sbjct: 96 SIIECVKQICVVMLETLSQSPPKGVTIPYRPKP-SSSPVIFAGGQ 139
Score = 161 (61.7 bits), Expect = 9.5e-42, Sum P(2) = 9.5e-42
Identities = 49/155 (31%), Positives = 72/155 (46%)
Query: 203 AVIPYEPKTMNAGPVILSGG--QAYTLHGEYAVPVQEVAGKKQPHPLAGLAVLGIEGIXX 260
A P+ +M P L G +AYT+ G+YA+P ++ Q LA+
Sbjct: 149 ASFPHTTPSMCLNPD-LEGPPLEAYTIQGQYAIPQPDLTKLHQ------LAMQQSHFPMT 201
Query: 261 XXXXXXXXXXXXXXRVKS--GGKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISG 318
VK G D E+ + +D+ GC+IG+ G+++ EIRQ+SG
Sbjct: 202 HGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSG 261
Query: 319 AQINIHTGTE-SHKKMFHIQGCQEAVSLAQYLINM 352
AQI I E S + I G ++SLAQYLIN+
Sbjct: 262 AQIKIANPVEGSTDRQVTITGSAASISLAQYLINV 296
Score = 115 (45.5 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 28/71 (39%), Positives = 43/71 (60%)
Query: 118 NCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGN 177
+ S Q +L IP G +IG+ G KI +IR +SGA +++A+ + ST+R VT+ G+
Sbjct: 225 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV-EGSTDRQVTITGS 283
Query: 178 PDTISQAIYQI 188
+IS A Y I
Sbjct: 284 AASISLAQYLI 294
Score = 69 (29.3 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPD 61
V ++ LIG GGC ++ +R+ +GA++ + P+
Sbjct: 46 VPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN 82
>UNIPROTKB|F8VRG9 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01022480
ProteinModelPortal:F8VRG9 SMR:F8VRG9 PRIDE:F8VRG9
Ensembl:ENST00000552083 ArrayExpress:F8VRG9 Bgee:F8VRG9
Uniprot:F8VRG9
Length = 323
Score = 296 (109.3 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
Identities = 60/117 (51%), Positives = 79/117 (67%)
Query: 107 EDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPM 166
ED + S P+ L+LV+PA+ CGSLIGKGGCKIK+IR+ +GA VQVA DMLP
Sbjct: 42 EDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN 101
Query: 167 STERIVTVHGNPDTISQAIYQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSGGQ 223
STER +T+ G P +I + + QIC+V++E KG IPY PK ++ PVI +GGQ
Sbjct: 102 STERAITIAGIPQSIIECVKQICVVMLESP---PKGVTIPYRPKP-SSSPVIFAGGQ 154
Score = 161 (61.7 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
Identities = 49/155 (31%), Positives = 72/155 (46%)
Query: 203 AVIPYEPKTMNAGPVILSGG--QAYTLHGEYAVPVQEVAGKKQPHPLAGLAVLGIEGIXX 260
A P+ +M P L G +AYT+ G+YA+P ++ Q LA+
Sbjct: 164 ASFPHTTPSMCLNPD-LEGPPLEAYTIQGQYAIPQPDLTKLHQ------LAMQQSHFPMT 216
Query: 261 XXXXXXXXXXXXXXRVKS--GGKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISG 318
VK G D E+ + +D+ GC+IG+ G+++ EIRQ+SG
Sbjct: 217 HGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSG 276
Query: 319 AQINIHTGTE-SHKKMFHIQGCQEAVSLAQYLINM 352
AQI I E S + I G ++SLAQYLIN+
Sbjct: 277 AQIKIANPVEGSTDRQVTITGSAASISLAQYLINV 311
Score = 115 (45.5 bits), Expect = 5.5e-07, Sum P(2) = 5.5e-07
Identities = 28/71 (39%), Positives = 43/71 (60%)
Query: 118 NCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGN 177
+ S Q +L IP G +IG+ G KI +IR +SGA +++A+ + ST+R VT+ G+
Sbjct: 240 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV-EGSTDRQVTITGS 298
Query: 178 PDTISQAIYQI 188
+IS A Y I
Sbjct: 299 AASISLAQYLI 309
Score = 69 (29.3 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPD 61
V ++ LIG GGC ++ +R+ +GA++ + P+
Sbjct: 65 VPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN 101
Score = 59 (25.8 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIR--DLSGANVQVASDMLPMSTERIV 172
L ++L++ GS+IGK G +K +R D+S + + P T R+V
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREEDISSSMTNSTAASRPPVTLRLV 64
Score = 49 (22.3 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 15 ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDR 62
+T+R L H E+ +IG G V+++R+E + S+T+ R
Sbjct: 14 LTIRLLMHGK----EVGSIIGKKGESVKKMREEDISS-SMTNSTAASR 56
>ZFIN|ZDB-GENE-040426-2122 [details] [associations]
symbol:zgc:65870 "zgc:65870" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-040426-2122
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:CU856621
EMBL:AL954840 EMBL:CABZ01011786 EMBL:CABZ01011787 EMBL:CABZ01011788
EMBL:CABZ01011789 EMBL:CABZ01011790 EMBL:CU462880 EMBL:CU469461
IPI:IPI01016643 Ensembl:ENSDART00000137945 Bgee:F1Q8M8
Uniprot:F1Q8M8
Length = 464
Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
Identities = 128/373 (34%), Positives = 193/373 (51%)
Query: 29 EISCLIGPGGCIVRRLRKESGAKISITDGACPDRIXXXXXXXXXXXXXXXXXGYPGHTLW 88
E+ +IG G V+R+R+ES A+I+I++G+CP+RI G T
Sbjct: 37 EVGSIIGKKGETVKRIREESSARINISEGSCPERIITIT----------------GAT-- 78
Query: 89 VTSVDNVCTAYNFMCRSLED--YHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKI 146
+ V A+ + LE+ + N P P+ L+LVIPA+ CGSLIGKGG KI
Sbjct: 79 ----ECVFRAFTMITIKLEEDLAALVANGTVTSKP-PVTLRLVIPASQCGSLIGKGGSKI 133
Query: 147 KDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVVKGAVIP 206
K+IR+ +GA VQVA D+LP STER VT+ G+ D I Q + IC V++E KGA IP
Sbjct: 134 KEIREKTGAQVQVAGDLLPNSTERGVTISGSQDAIIQCVKLICTVILESP---PKGATIP 190
Query: 207 YEPKTMNAGPVILSGGQAYTLHGEYAV-PVQEVA-GK---KQPHPLA---GLAVLGIEGI 258
Y P G V+L+G Q + E+A P+ VA G +Q + + G+ + +
Sbjct: 191 YRPSPA-PGAVLLAGNQVFET-SEFASHPLFSVAQGGLDLQQAYTVQNQYGIPHSELAKL 248
Query: 259 XXXXXXXXXX--XXXXXXRVKSGGKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQI 316
+V G ++ E+++ +D+ G +IG+ G+++ EIRQ+
Sbjct: 249 HQLSMQQGLGPIAQATATQVLPAGIESSSQTASQELLIPNDLIGSIIGRQGTKINEIRQV 308
Query: 317 SGAQINIHTGTESHK-KMFHIQGCQEAVSLAQYLINMCIELQKNNTTNTSDNPEPADLDA 375
SGAQI I + +S + I G +++LAQYLI C+E K+ T +S P DL+
Sbjct: 309 SGAQIKIGSQLDSTSDRHVTITGSPISINLAQYLITSCLETAKS-TAQSSSMSTPVDLNM 367
Query: 376 AISAFMTASVNSS 388
+ + TA SS
Sbjct: 368 SFT--QTAPPASS 378
Score = 116 (45.9 bits), Expect = 0.00084, P = 0.00084
Identities = 34/119 (28%), Positives = 58/119 (48%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQ 183
L L+L++ GS+IGK G +K IR+ S A + ++ P ERI+T+ G + + +
Sbjct: 27 LTLRLLMHGKEVGSIIGKKGETVKRIREESSARINISEGSCP---ERIITITGATECVFR 83
Query: 184 AIYQICLVLIE-CTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEVAGK 241
A I + L E V G V P T+ +++ Q +L G+ ++E+ K
Sbjct: 84 AFTMITIKLEEDLAALVANGTVTSKPPVTLR---LVIPASQCGSLIGKGGSKIKEIREK 139
>UNIPROTKB|F1M8T3 [details] [associations]
symbol:F1M8T3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074311 IPI:IPI00780141
Ensembl:ENSRNOT00000055638 OMA:SISEGNC Uniprot:F1M8T3
Length = 214
Score = 325 (119.5 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 62/107 (57%), Positives = 79/107 (73%)
Query: 128 LVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQ 187
LV+PA+ CGSLIGKGGCKIK+IR+ +G VQVA DMLP STER +T+ G P +I + + Q
Sbjct: 90 LVVPASQCGSLIGKGGCKIKEIRESTGVQVQVAGDMLPNSTERAITIAGIPQSIIECVKQ 149
Query: 188 ICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVP 234
IC+V+++ Q KG IPY PK + PVI +GGQAYT+ G YAVP
Sbjct: 150 ICVVMLKTLSQSPKGVTIPYLPKP--SSPVIFTGGQAYTIQGRYAVP 194
Score = 113 (44.8 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 15 ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
+T+R L H E+ +IG G V+++RKESGA+ISI++G CP+RI
Sbjct: 4 LTIRLLMHGK----EVGSIIGKDGESVKKMRKESGARISISEGNCPERI 48
Score = 63 (27.2 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 17/69 (24%), Positives = 35/69 (50%)
Query: 292 IVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGT--ESHKKMFHIQGCQEAVSLAQYL 349
+V+ G +IGK G ++ EIR+ +G Q+ + S ++ I G + S+ + +
Sbjct: 90 LVVPASQCGSLIGKGGCKIKEIRESTGVQVQVAGDMLPNSTERAITIAGIPQ--SIIECV 147
Query: 350 INMCIELQK 358
+C+ + K
Sbjct: 148 KQICVVMLK 156
>UNIPROTKB|Q9GZT1 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IDA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IDA] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=IDA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007050 "cell
cycle arrest" evidence=IDA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0008630
GO:GO:0006977 EMBL:CH471055 GO:GO:0007050 GO:GO:0003723
EMBL:AC115284 HOGENOM:HOG000182823 HOVERGEN:HBG053520
UniGene:Hs.20930 HGNC:HGNC:8652 NextBio:62848 EMBL:AF257770
EMBL:AF257772 IPI:IPI00006997 HSSP:Q9UNW9 SMR:Q9GZT1 STRING:Q9GZT1
Ensembl:ENST00000395014 UCSC:uc003dcc.2 Uniprot:Q9GZT1
Length = 424
Score = 189 (71.6 bits), Expect = 4.1e-38, Sum P(4) = 4.1e-38
Identities = 44/92 (47%), Positives = 58/92 (63%)
Query: 153 SGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVVKGAVIPYEPKTM 212
+GA VQVA D+LP STER VTV G PD I + QIC V++E KGA IPY P ++
Sbjct: 152 TGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVILESP---PKGATIPYHP-SL 207
Query: 213 NAGPVILSGGQAYTLHGEY-AVPVQEVAGKKQ 243
+ G V+LS Q +++ G+Y AV EV +Q
Sbjct: 208 SLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQ 239
Score = 182 (69.1 bits), Expect = 4.1e-38, Sum P(4) = 4.1e-38
Identities = 47/131 (35%), Positives = 70/131 (53%)
Query: 280 GKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQG 338
G D G E ++ +D+ GCVIG+ GS++ EIRQ+SGA I I E + ++ I G
Sbjct: 255 GLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITG 314
Query: 339 CQEAVSLAQYLINMCIELQKNNTTNTSDNPEPADLDAAISAFMTASVNSSLIEKPTPHPG 398
+++LAQYLI C+E K+ + T + PADL A S +TA + TP+
Sbjct: 315 SPVSIALAQYLITACLETAKSTSGGTPSSA-PADLPAPFSPPLTALPTAPPGLLGTPYAI 373
Query: 399 SMVTLGGLSEL 409
S+ GL +
Sbjct: 374 SLSNFIGLKPM 384
Score = 119 (46.9 bits), Expect = 4.1e-38, Sum P(4) = 4.1e-38
Identities = 23/37 (62%), Positives = 29/37 (78%)
Query: 118 NCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSG 154
N S P+ L+LVIPA+ CGSLIGK G KIK+IR++ G
Sbjct: 62 NVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIREVRG 98
Score = 104 (41.7 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 35/126 (27%), Positives = 57/126 (45%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIY 186
+ ++P G +IG+ G KI +IR +SGA++++ + + ER VT+ G+P +I+ A Y
Sbjct: 266 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQA-EGAGERHVTITGSPVSIALAQY 324
Query: 187 QI--CLVLIECTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEVAGKKQP 244
I CL + T + P + L L YA+ + G K P
Sbjct: 325 LITACLETAKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGLK-P 383
Query: 245 HPLAGL 250
P L
Sbjct: 384 MPFLAL 389
Score = 59 (25.8 bits), Expect = 4.1e-38, Sum P(4) = 4.1e-38
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 39 CIVRRLRKESGAKISITDGACPDRI 63
C L +S A+I+I++G+CP+RI
Sbjct: 4 CPALILYLQSSARITISEGSCPERI 28
Score = 58 (25.5 bits), Expect = 4.1e-13, Sum P(2) = 4.1e-13
Identities = 26/114 (22%), Positives = 46/114 (40%)
Query: 153 SGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIE--CTLQVVKGAVIPYEPK 210
S A + ++ P ERI T+ G+ + A+ I L E C G + P
Sbjct: 13 SSARITISEGSCP---ERITTITGSTAAVFHAVSMIAFKLDEDLCAAPA-NGGNVSRPPV 68
Query: 211 TMNAGPVILSGGQAYTLHGEYAVPVQEVAGKKQP--HPLA----GLAVLGIEGI 258
T+ +++ Q +L G+ ++E+ + HP G V G+ G+
Sbjct: 69 TLR---LVIPASQCGSLIGKAGTKIKEIREVRGEIYHPQGIRGKGAVVRGVLGL 119
>UNIPROTKB|Q17QV0 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005829 "cytosol" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 OMA:FWAPSVL
OrthoDB:EOG4XH00F EMBL:DAAA02003497 EMBL:DAAA02003498
EMBL:DAAA02003499 EMBL:DAAA02003500 EMBL:DAAA02003501 EMBL:BC118166
IPI:IPI00733966 RefSeq:NP_001069752.1 UniGene:Bt.27304 SMR:Q17QV0
Ensembl:ENSBTAT00000043482 GeneID:613725 KEGG:bta:613725
InParanoid:Q17QV0 NextBio:20898729 Uniprot:Q17QV0
Length = 361
Score = 312 (114.9 bits), Expect = 9.3e-38, Sum P(2) = 9.3e-38
Identities = 74/174 (42%), Positives = 98/174 (56%)
Query: 83 PGHTLWVTS-VDNVCTAYNFMCRSLEDYHINR-NRMENCSPQPLQLKLVIPATHCGSLIG 140
P + +T D + A+ + E+ IN + S P+ L+LV+PA+ CGSLIG
Sbjct: 55 PERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIG 114
Query: 141 KGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVV 200
KGG KIK+IR+ +GA VQVA DMLP STER VT+ G PD I Q + QIC+V++E
Sbjct: 115 KGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESP---P 171
Query: 201 KGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEVAGKKQPHPLAGLAVLG 254
KGA IPY PK + PVI +GGQ A ++ QP PL + G
Sbjct: 172 KGATIPYRPKPAST-PVIFAGGQVRA--DPLAASTANLSLLLQPPPLPAYTIQG 222
Score = 171 (65.3 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 45/135 (33%), Positives = 67/135 (49%)
Query: 224 AYTLHGEYAVP------VQEVAGKKQPHPLAGLAVLGIEGIXXXXXXXXXXXXXXXXRVK 277
AYT+ G+YA+P + ++A ++ P P G G +
Sbjct: 217 AYTIQGQYAIPHPDLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMG---Q 273
Query: 278 SGGKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHI 336
S G D E+ + +D+ GC+IG+ G+++ EIRQ+SGAQI I TE S ++ I
Sbjct: 274 SSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITI 333
Query: 337 QGCQEAVSLAQYLIN 351
G +SLAQYLIN
Sbjct: 334 TGTPANISLAQYLIN 348
Score = 116 (45.9 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 28/71 (39%), Positives = 41/71 (57%)
Query: 118 NCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGN 177
+ SP +L IP G +IG+ G KI +IR +SGA +++A+ S+ER +T+ G
Sbjct: 278 DASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIAN-ATEGSSERQITITGT 336
Query: 178 PDTISQAIYQI 188
P IS A Y I
Sbjct: 337 PANISLAQYLI 347
Score = 109 (43.4 bits), Expect = 9.3e-38, Sum P(2) = 9.3e-38
Identities = 24/61 (39%), Positives = 39/61 (63%)
Query: 6 DGKIDEDTL---ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDR 62
+ K+ E L +T+R L H E+ +IG G V+++R+ESGA+I+I++G CP+R
Sbjct: 2 ESKVSEGGLNVTLTIRLLMHGK----EVGSIIGKKGETVKKMREESGARINISEGNCPER 57
Query: 63 I 63
I
Sbjct: 58 I 58
Score = 104 (41.7 bits), Expect = 6.2e-17, Sum P(2) = 6.2e-17
Identities = 31/116 (26%), Positives = 57/116 (49%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQ 183
L ++L++ GS+IGK G +K +R+ SGA + ++ P ERIVT+ G D I +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCP---ERIVTITGPTDAIFK 70
Query: 184 AIYQICLVLIECTLQVVKGAVIPYEPK-TMNAGPVILSGGQAYTLHGEYAVPVQEV 238
A I E + + + +P T+ +++ Q +L G+ ++E+
Sbjct: 71 AFAMIAYKFEEDIINSMSNSPATSKPPVTLR---LVVPASQCGSLIGKGGSKIKEI 123
Score = 84 (34.6 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 29/121 (23%), Positives = 55/121 (45%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGT--ESHKKMFHIQGCQEAVSL 345
V +V+ G +IGK GS++ EIR+ +GAQ+ + S ++ I G +A+
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAI-- 155
Query: 346 AQYLINMCIELQKNNTTNTSD--NPEPADLDAAISA-------FMTASVNSSLIEKPTPH 396
Q + +C+ + ++ + P+PA + ++ N SL+ +P P
Sbjct: 156 IQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQVRADPLAASTANLSLLLQPPPL 215
Query: 397 P 397
P
Sbjct: 216 P 216
Score = 59 (25.8 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPD 61
V ++ LIG GG ++ +R+ +GA++ + P+
Sbjct: 104 VPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPN 140
>UNIPROTKB|D4A8D6 [details] [associations]
symbol:D4A8D6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074311 OrthoDB:EOG46WZ8K IPI:IPI00559929
Ensembl:ENSRNOT00000045980 Uniprot:D4A8D6
Length = 330
Score = 340 (124.7 bits), Expect = 9.2e-36, Sum P(2) = 9.2e-36
Identities = 85/242 (35%), Positives = 123/242 (50%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQ 183
+ L LV+P CGSLIGKGGCKIK+IR+ +GA VQVA MLP STE T+ G P +I +
Sbjct: 98 VNLCLVVPDCQCGSLIGKGGCKIKEIRENTGAQVQVAGHMLPNSTEWAFTIAGIPQSIIE 157
Query: 184 AIYQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEVAGKKQ 243
+ Q C+V++E KG IPY P+ + PVI +GGQ+YT+ G+Y P ++ Q
Sbjct: 158 CVKQFCVVMLEIPSLPPKGVTIPYWPQP-SGSPVIFAGGQSYTIQGQYTTPRPDLTKLYQ 216
Query: 244 PHPLAGLAVLGIEGIXXXXXXXXXXXXXXXXRVKSGGKDTGDDFVETEIVLTDDIAGCVI 303
A+ + + G D E+ + +D+ GC+I
Sbjct: 217 S------AIQ--QSHFPMTMQHCIQWNTPEMKGYCAGLDASAQTTSHELTVPNDLIGCII 268
Query: 304 GKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQGCQEAVSLAQYLINMCIELQKNNTT 362
G+ + E+ Q GAQI I E S I G ++SLAQYLI++ + +
Sbjct: 269 RHQGAEINEVCQACGAQIKIANPMEGSTDWQVTITGSTASISLAQYLISVRLSSETGGMG 328
Query: 363 NT 364
N+
Sbjct: 329 NS 330
Score = 62 (26.9 bits), Expect = 9.2e-36, Sum P(2) = 9.2e-36
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 15 ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
+T+R L H E+ ++G G R+L +E G I+I + C +RI
Sbjct: 14 LTIRLLMHGK----EVGSIMGKKGESARKLCEECGTLINILEENCLERI 58
>UNIPROTKB|B4DLC0 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HOVERGEN:HBG053520 HGNC:HGNC:8648 ChiTaRS:PCBP2
EMBL:AK296930 IPI:IPI01009186 SMR:B4DLC0 STRING:B4DLC0
Ensembl:ENST00000541275 UCSC:uc010soh.1 Uniprot:B4DLC0
Length = 301
Score = 296 (109.3 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 60/117 (51%), Positives = 79/117 (67%)
Query: 107 EDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPM 166
ED + S P+ L+LV+PA+ CGSLIGKGGCKIK+IR+ +GA VQVA DMLP
Sbjct: 81 EDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN 140
Query: 167 STERIVTVHGNPDTISQAIYQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSGGQ 223
STER +T+ G P +I + + QIC+V++E KG IPY PK ++ PVI +GGQ
Sbjct: 141 STERAITIAGIPQSIIECVKQICVVMLESP---PKGVTIPYRPKP-SSSPVIFAGGQ 193
Score = 105 (42.0 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 15 ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
+T+R L H E+ +IG G V+++R+ESGA+I+I++G CP+RI
Sbjct: 14 LTIRLLMHGK----EVGSIIGKKGESVKKMREESGARINISEGNCPERI 58
Score = 67 (28.6 bits), Expect = 9.2e-06, Sum P(2) = 9.2e-06
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI 323
V +V+ G +IGK G ++ EIR+ +GAQ+ +
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
Score = 51 (23.0 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 203 AVIPYEPKTMNAGPVILSGG--QAYTLHGEYAVP 234
A P+ +M P L G +AYT+ G+YA+P
Sbjct: 203 ASFPHTTPSMCLNPD-LEGPPLEAYTIQGQYAIP 235
>UNIPROTKB|H9L011 [details] [associations]
symbol:LOC426023 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AADN02056329 Ensembl:ENSGALT00000021744 OMA:RALENKI
Uniprot:H9L011
Length = 195
Score = 296 (109.3 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 60/117 (51%), Positives = 79/117 (67%)
Query: 107 EDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPM 166
ED + S P+ L+LV+PA+ CGSLIGKGGCKIK+IR+ +GA VQVA DMLP
Sbjct: 81 EDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN 140
Query: 167 STERIVTVHGNPDTISQAIYQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSGGQ 223
STER +T+ G P +I + + QIC+V++E KG IPY PK ++ PVI +GGQ
Sbjct: 141 STERAITIAGIPQSIIECVKQICVVMLESP---PKGVTIPYRPKP-SSSPVIFAGGQ 193
Score = 105 (42.0 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 15 ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
+T+R L H E+ +IG G V+++R+ESGA+I+I++G CP+RI
Sbjct: 14 LTIRLLMHGK----EVGSIIGKKGESVKKMREESGARINISEGNCPERI 58
Score = 67 (28.6 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI 323
V +V+ G +IGK G ++ EIR+ +GAQ+ +
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
>ZFIN|ZDB-GENE-050706-149 [details] [associations]
symbol:zgc:110045 "zgc:110045" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-050706-149
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:CR759794
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520
OrthoDB:EOG46WZ8K EMBL:BC098540 IPI:IPI00629204
RefSeq:NP_001035073.1 UniGene:Dr.87947 SMR:Q4KMJ2
Ensembl:ENSDART00000079745 GeneID:664755 KEGG:dre:664755
OMA:QSCARIT NextBio:20902333 Uniprot:Q4KMJ2
Length = 222
Score = 288 (106.4 bits), Expect = 8.1e-35, Sum P(2) = 8.1e-35
Identities = 60/124 (48%), Positives = 82/124 (66%)
Query: 120 SPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPD 179
S P+ L+LV PA+ CGSLIGKGG KIK+IR+ +GA VQVA D+LP STER VT+ G P
Sbjct: 97 SRPPVTLRLVFPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDLLPDSTERAVTISGTPH 156
Query: 180 TISQAIYQICLVLIECTLQVVKGAVIPYEPK-TMNAGPVILS---GGQAYTLHGEYAVPV 235
I+Q + IC V++E KGA IPY PK + G +L+ A+ + G++A+P
Sbjct: 157 AITQCVKHICTVMLESP---PKGATIPYRPKPSAGGGHTVLTQPHAATAFAIPGQFAIPP 213
Query: 236 QEVA 239
Q+V+
Sbjct: 214 QDVS 217
Score = 105 (42.0 bits), Expect = 8.1e-35, Sum P(2) = 8.1e-35
Identities = 24/61 (39%), Positives = 39/61 (63%)
Query: 6 DGKIDEDTL---ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDR 62
+G + E L +T+R L H E+ +IG G V+++R+ESGA+I+I+DG+ P+R
Sbjct: 5 EGGVSEGGLNVTLTIRLLMHGK----EVGSIIGKKGETVKKMREESGARINISDGSSPER 60
Query: 63 I 63
I
Sbjct: 61 I 61
Score = 77 (32.2 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGT--ESHKKMFHIQGCQEAVS- 344
V +V G +IGK GS++ EIR+ +GAQ+ + +S ++ I G A++
Sbjct: 101 VTLRLVFPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDLLPDSTERAVTISGTPHAITQ 160
Query: 345 LAQYLINMCIELQKNNTTNTSDNPEPA 371
+++ + +E T P+P+
Sbjct: 161 CVKHICTVMLESPPKGAT-IPYRPKPS 186
>UNIPROTKB|F8VRH0 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01022901
Ensembl:ENST00000553064 ArrayExpress:F8VRH0 Bgee:F8VRH0
Uniprot:F8VRH0
Length = 310
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 100/292 (34%), Positives = 149/292 (51%)
Query: 153 SGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVVKGAVIPYEPKTM 212
+GA VQVA DMLP STER +T+ G P +I + + QIC+V++E KG IPY PK
Sbjct: 2 TGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESP---PKGVTIPYRPKP- 57
Query: 213 NAGPVILSGGQAYTLHGEYAVPVQEVAGKKQPHPLAGLAVLGIEGIXXXXXXXXXXXXXX 272
++ PVI +GGQAYT+ G+YA+P ++ Q LA+
Sbjct: 58 SSSPVIFAGGQAYTIQGQYAIPQPDLTKLHQ------LAMQQSHFPMTHGNTGFSGIESS 111
Query: 273 XXRVKS--GGKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-S 329
VK G D E+ + +D+ GC+IG+ G+++ EIRQ+SGAQI I E S
Sbjct: 112 SPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGS 171
Query: 330 HKKMFHIQGCQEAVSLAQYLINMCIELQKNNTTNTS----DN-----PEPADLDAAISAF 380
+ I G ++SLAQYLIN+ +E K ++ S D+ +P+ ++ S+
Sbjct: 172 TDRQVTITGSAASISLAQYLINVSLENAKPSSQAASVTIPDHLSINLSQPSTPSSSSSST 231
Query: 381 MTASV-NSSLIEKPTPHPGSMVTLGGLSELLAN----IAASNVKSTVQTTGA 427
T S+ + + P+ P + T +S LL + A NV S + TGA
Sbjct: 232 TTPSLATAGTSDAPSSLPNPLPTAPCVSSLLGMKPIPLLALNVVSAAKGTGA 283
Score = 115 (45.5 bits), Expect = 0.00054, P = 0.00054
Identities = 28/71 (39%), Positives = 43/71 (60%)
Query: 118 NCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGN 177
+ S Q +L IP G +IG+ G KI +IR +SGA +++A+ + ST+R VT+ G+
Sbjct: 123 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV-EGSTDRQVTITGS 181
Query: 178 PDTISQAIYQI 188
+IS A Y I
Sbjct: 182 AASISLAQYLI 192
>UNIPROTKB|F1LT74 [details] [associations]
symbol:F1LT74 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 IPI:IPI00568045
Ensembl:ENSRNOT00000050969 OMA:YNISMIA Uniprot:F1LT74
Length = 320
Score = 297 (109.6 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
Identities = 85/230 (36%), Positives = 120/230 (52%)
Query: 129 VIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQI 188
V+PA+ CGSLIGKG IK+IR+ +GA VQ A +MLP STER +T+ G +I + + QI
Sbjct: 102 VVPASQCGSLIGKG--TIKEIRESTGAQVQAAGNMLPNSTERAITIAGILPSIIECVKQI 159
Query: 189 CLVLIECTLQVVKGAVIPYEPKTMNA-----GPVILSGGQAYTLHGEYAVPVQEVAGKKQ 243
C+V++E A P+ +M GP + +A T+ G YA+P ++ Q
Sbjct: 160 CVVMLETPSLRSTCASFPHTTTSMCLYRDLEGPPL----EACTIQGHYAMPQPDLTKLHQ 215
Query: 244 PHPLAGLAVLGIEGIXXXXXXXXXXXXXXXXRVKSG-GKDTGDDFVETEIVLTDDIAGCV 302
H G + GIE VK G D E+ L +D+ GC+
Sbjct: 216 THGNTGFS--GIES--------------SSPEVKGYLGLDESAQTTSHELTLPNDLIGCI 259
Query: 303 IGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQGCQEAVSLAQYLIN 351
IG+ G+++ EIRQ+SGAQI E S + I G ++SLAQYLIN
Sbjct: 260 IGRQGAKINEIRQMSGAQIKTANPVEGSTDRQVTITGPAASISLAQYLIN 309
Score = 106 (42.4 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 120 SPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPD 179
S Q +L +P G +IG+ G KI +IR +SGA ++ A+ + ST+R VT+ G
Sbjct: 241 SAQTTSHELTLPNDLIGCIIGRQGAKINEIRQMSGAQIKTANPV-EGSTDRQVTITGPAA 299
Query: 180 TISQAIYQI 188
+IS A Y I
Sbjct: 300 SISLAQYLI 308
Score = 70 (29.7 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 15 ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
+T+R L H E+ +I V++L+++S A+I+I++G CP+RI
Sbjct: 17 LTIRLLMHGK----EVGSIIRKSRESVKKLQEKS-ARINISEGNCPERI 60
>UNIPROTKB|I3LRF8 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005829 "cytosol" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 OMA:FWAPSVL EMBL:FP312938
Ensembl:ENSSSCT00000030310 Uniprot:I3LRF8
Length = 265
Score = 245 (91.3 bits), Expect = 3.9e-30, Sum P(2) = 3.9e-30
Identities = 50/99 (50%), Positives = 66/99 (66%)
Query: 136 GSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIEC 195
G ++G+G ++ +GA VQVA DMLP STER VT+ G PD I Q + QIC+V++E
Sbjct: 141 GCVLGQGPLCPPGLKGSTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLES 200
Query: 196 TLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVP 234
KGA IPY PK + PVI +GGQAYT+ G+YA+P
Sbjct: 201 P---PKGATIPYRPKPAST-PVIFAGGQAYTIQGQYAIP 235
Score = 109 (43.4 bits), Expect = 3.9e-30, Sum P(2) = 3.9e-30
Identities = 24/61 (39%), Positives = 39/61 (63%)
Query: 6 DGKIDEDTL---ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDR 62
+ K+ E L +T+R L H E+ +IG G V+++R+ESGA+I+I++G CP+R
Sbjct: 32 ESKVSEGGLNVTLTIRLLMHGK----EVGSIIGKKGETVKKMREESGARINISEGNCPER 87
Query: 63 I 63
I
Sbjct: 88 I 88
Score = 108 (43.1 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 35/111 (31%), Positives = 56/111 (50%)
Query: 83 PGHTLWVTSVDNVCTAYNFMCRSLEDYHINRNRMENCSPQ-----PLQLKLVIPATHCGS 137
PG T+W SV T ++ + + H R +ME+ + L ++L++ GS
Sbjct: 1 PGDTIWAPSVLPHGT-FSTLSHQPQ-LHFGR-KMESKVSEGGLNVTLTIRLLMHGKEVGS 57
Query: 138 LIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQI 188
+IGK G +K +R+ SGA + ++ P ERIVT+ G D I +A I
Sbjct: 58 IIGKKGETVKKMREESGARINISEGNCP---ERIVTITGPTDAIFKAFAMI 105
Score = 54 (24.1 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 25/125 (20%), Positives = 53/125 (42%)
Query: 288 VETEIVLTDDIA-GCVIGKAGSRLLEIRQISGAQINIHTGT--ESHKKMFHIQGCQEAVS 344
V T+ V+T + GCV+G+ ++ +GAQ+ + S ++ I G +A+
Sbjct: 128 VWTQRVITLGVTVGCVLGQGPLCPPGLKGSTGAQVQVAGDMLPNSTERAVTISGTPDAI- 186
Query: 345 LAQYLINMCIELQKNNTTNTSD--NPEPADLDAAISAFMTASVNSSLIEKPTPHPGSMVT 402
Q + +C+ + ++ + P+PA + ++ + PHP +
Sbjct: 187 -IQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYTIQG---QYAIPHPDQLTK 242
Query: 403 LGGLS 407
L L+
Sbjct: 243 LHQLA 247
>WB|WBGene00003978 [details] [associations]
symbol:pes-4 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 EMBL:FO081827 GeneTree:ENSGT00550000074311
eggNOG:NOG315872 RefSeq:NP_497351.3 ProteinModelPortal:Q95Y67
SMR:Q95Y67 PaxDb:Q95Y67 EnsemblMetazoa:Y119D3B.17 GeneID:175288
KEGG:cel:CELE_Y119D3B.17 UCSC:Y119D3B.17 CTD:175288
WormBase:Y119D3B.17 HOGENOM:HOG000020666 InParanoid:Q95Y67
OMA:PHSTERA NextBio:887534 Uniprot:Q95Y67
Length = 432
Score = 270 (100.1 bits), Expect = 1.6e-29, Sum P(2) = 1.6e-29
Identities = 65/159 (40%), Positives = 98/159 (61%)
Query: 98 AYNFMCRSLEDYHINRNRMENCSPQP-LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGAN 156
A+N +C E+ + + N P+P + +++++PAT CGSLIGKGG KIKDIR+ +GA+
Sbjct: 129 AFNMVCNKFEEDML---LLPNSVPKPPITMRVIVPATQCGSLIGKGGSKIKDIREATGAS 185
Query: 157 VQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVVKGAVIPYEPK-TMNAG 215
+QVAS+MLP STER VT+ G D I+ + Q+C +L+E KG+ I Y PK T N
Sbjct: 186 IQVASEMLPHSTERAVTLSGTADAINLCMTQVCQILLEAP---PKGSTITYRPKPTFN-- 240
Query: 216 PVILSGGQAYTLHGEYAVPVQEVAGKKQPHPLAGLAVLG 254
P+ ++ A T+ A Q+ ++Q LA A++G
Sbjct: 241 PLAIATSAA-TI----AAQQQQAQAQQQ---LAAAALMG 271
Score = 124 (48.7 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 44/151 (29%), Positives = 70/151 (46%)
Query: 97 TAYNFMCRSLEDYHINRNRMENCSPQ---P------LQLKLVIPATHCGSLIGKGGCKIK 147
T N S H+ + +CSP+ P L ++L++ GS+IGK G +IK
Sbjct: 36 TTRNTANGSTSSDHLLGDPSSSCSPRETSPSTTSLVLTIRLLMQGKEVGSIIGKKGDQIK 95
Query: 148 DIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVVKGAVIPY 207
IR+ SGA + ++ P ERIVT+ G I +A +C E L + +P
Sbjct: 96 KIREESGAKINISDGSCP---ERIVTITGTLGVIGKAFNMVCNKFEEDMLLLPNS--VPK 150
Query: 208 EPKTMNAGPVILSGGQAYTLHGEYAVPVQEV 238
P TM VI+ Q +L G+ ++++
Sbjct: 151 PPITMR---VIVPATQCGSLIGKGGSKIKDI 178
Score = 107 (42.7 bits), Expect = 1.6e-29, Sum P(2) = 1.6e-29
Identities = 21/50 (42%), Positives = 35/50 (70%)
Query: 14 LITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
++T+R L E+ +IG G ++++R+ESGAKI+I+DG+CP+RI
Sbjct: 71 VLTIRLLMQGK----EVGSIIGKKGDQIKKIREESGAKINISDGSCPERI 116
Score = 79 (32.9 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 22/94 (23%), Positives = 46/94 (48%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTESH--KKMFHIQGCQEAVSL 345
+ +++ G +IGK GS++ +IR+ +GA I + + H ++ + G +A++L
Sbjct: 153 ITMRVIVPATQCGSLIGKGGSKIKDIREATGASIQVASEMLPHSTERAVTLSGTADAINL 212
Query: 346 AQYLI-NMCIELQKNNTTNTSDNPEPADLDAAIS 378
+ + +E +T T P+P AI+
Sbjct: 213 CMTQVCQILLEAPPKGSTITY-RPKPTFNPLAIA 245
>UNIPROTKB|F1LU04 [details] [associations]
symbol:F1LU04 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 IPI:IPI00777998
Ensembl:ENSRNOT00000016081 Uniprot:F1LU04
Length = 358
Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
Identities = 112/349 (32%), Positives = 168/349 (48%)
Query: 29 EISCLIGPGGCIVRRLRKESGAKISITDGACPDRIXXXXXXXXXXXXXXXXXGYPGHTLW 88
E+ +IG G V++ R+ESGA ++I++G CP+RI G T
Sbjct: 36 EVGSIIGKKGESVKK-REESGAHLNISEGNCPERIITLA----------------GPT-- 76
Query: 89 VTSVDNVCTAYNFMCRSLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKD 148
N T F LE+ + +P+ +LV+P + CGSLIGKG CKIK+
Sbjct: 77 -----NA-TFKAFAMIKLEEDRSRSMTNSTAASRPVTSRLVVPDSQCGSLIGKGICKIKE 130
Query: 149 IRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVVKGAVIPYE 208
+ + +G VQVA DMLP S+E+ + + P +I + + QI +V++E T KG IPY
Sbjct: 131 VGETTGP-VQVAGDMLPNSSEQAIPIASIPQSIIECVNQIGVVMLE-TQHSPKGVTIPYL 188
Query: 209 PKTMNAGPVILSGGQ-AYTLHGEYAV--PVQEVAGKKQPH----PLAGLAVLGIEGIXXX 261
PK ++ VI +GGQ Y++ G +V P ++ P PL + G I
Sbjct: 189 PKP-SSSIVIFAGGQDRYSI-GSNSVSFPHTILSMYLNPDLERPPLEAYTIQGQYAIPQP 246
Query: 262 XXXXXXXXXXXXXRV-----KSG-GKDTGDDFVE--TEIVLT-DDIAGCVIGKAGSRLLE 312
+G G + G D T LT +D+ GC+IG+ G+++ E
Sbjct: 247 DLTKLHQLAMQQFHFPMTCGNTGFGIEAGSDASAQTTSHELTPNDLIGCIIGRQGAKINE 306
Query: 313 IRQISGAQINIHTGTESHKKMFHIQGCQEAVSLAQYLINMCIELQKNNT 361
I Q+SGAQI I S + I G ++SLAQYLIN+ + + T
Sbjct: 307 IHQMSGAQIKIANPEGSTDRQVTITGPAASISLAQYLINVRLSPETGGT 355
>UNIPROTKB|F8VXH9 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01022190
ProteinModelPortal:F8VXH9 SMR:F8VXH9 Ensembl:ENST00000550520
ArrayExpress:F8VXH9 Bgee:F8VXH9 Uniprot:F8VXH9
Length = 160
Score = 247 (92.0 bits), Expect = 1.2e-27, Sum P(2) = 1.2e-27
Identities = 47/88 (53%), Positives = 63/88 (71%)
Query: 107 EDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPM 166
ED + S P+ L+LV+PA+ CGSLIGKGGCKIK+IR+ +GA VQVA DMLP
Sbjct: 73 EDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN 132
Query: 167 STERIVTVHGNPDTISQAIYQICLVLIE 194
STER +T+ G P +I + + QIC+V++E
Sbjct: 133 STERAITIAGIPQSIIECVKQICVVMLE 160
Score = 83 (34.3 bits), Expect = 1.2e-27, Sum P(2) = 1.2e-27
Identities = 15/29 (51%), Positives = 24/29 (82%)
Query: 35 GPGGCIVRRLRKESGAKISITDGACPDRI 63
G G V+++R+ESGA+I+I++G CP+RI
Sbjct: 22 GKKGESVKKMREESGARINISEGNCPERI 50
>UNIPROTKB|C9JZY3 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00984041 ProteinModelPortal:C9JZY3 SMR:C9JZY3
STRING:C9JZY3 Ensembl:ENST00000468324 ArrayExpress:C9JZY3
Bgee:C9JZY3 Uniprot:C9JZY3
Length = 168
Score = 222 (83.2 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
Identities = 45/72 (62%), Positives = 53/72 (73%)
Query: 118 NCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGN 177
N S P+ L+LVIPA+ CGSLIGK G KIK+IR+ +GA VQVA D+LP STER VTV G
Sbjct: 96 NVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGV 155
Query: 178 PDTISQAIYQIC 189
PD I + QIC
Sbjct: 156 PDAIILCVRQIC 167
Score = 111 (44.1 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 1 MDGNGDGKIDEDTL---ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDG 57
M G+ G +E L +T+R L H E+ +IG G V+R+R++S A+I+I++G
Sbjct: 1 MSGSDGGLEEEPELSITLTLRMLMHGK----EVGSIIGKKGETVKRIREQSSARITISEG 56
Query: 58 ACPDRI 63
+CP+RI
Sbjct: 57 SCPERI 62
Score = 106 (42.4 bits), Expect = 0.00080, P = 0.00080
Identities = 31/117 (26%), Positives = 55/117 (47%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQ 183
L L++++ GS+IGK G +K IR+ S A + ++ P ERI T+ G+ +
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCP---ERITTITGSTAAVFH 74
Query: 184 AIYQICLVLIE--CTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEV 238
A+ I L E C G + P T+ +++ Q +L G+ ++E+
Sbjct: 75 AVSMIAFKLDEDLCAAPA-NGGNVSRPPVTLR---LVIPASQCGSLIGKAGTKIKEI 127
Score = 77 (32.2 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGT--ESHKKMFHIQGCQEAVSL 345
V +V+ G +IGKAG+++ EIR+ +GAQ+ + S ++ + G +A+ L
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 161
>UNIPROTKB|E2RCG0 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AAEX03014980 ProteinModelPortal:E2RCG0 PRIDE:E2RCG0
Ensembl:ENSCAFT00000010995 NextBio:20853046 Uniprot:E2RCG0
Length = 291
Score = 190 (71.9 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 37/73 (50%), Positives = 51/73 (69%)
Query: 163 MLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVV-KGAVIPYEPKTMNAGPVILSG 221
MLP STER +T+ G P +I + + QIC+V++E Q KG IPY PK ++ PVI +G
Sbjct: 1 MLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPKP-SSSPVIFAG 59
Query: 222 GQAYTLHGEYAVP 234
GQAYT+ G+YA+P
Sbjct: 60 GQAYTIQGQYAIP 72
Score = 166 (63.5 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 52/166 (31%), Positives = 83/166 (50%)
Query: 278 SGGKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHI 336
S G D E+ + +D+ GC+IG+ G+++ EIRQ+SGAQI I E S + I
Sbjct: 99 SAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTI 158
Query: 337 QGCQEAVSLAQYLINMCIELQKNNTTNTSDN-PEPADLDAAISAFMTASVNSSLI----- 390
G ++SLAQYLIN+ +E K ++ S P+ ++ + + ++S +SS
Sbjct: 159 TGSAASISLAQYLINVSLENAKPSSQAASVTIPDHLSINLSQPSTPSSSSSSSTTTPSLA 218
Query: 391 -----EKPTPHPGSMVTLGGLSELLAN----IAASNVKSTVQTTGA 427
+ P+ P + T +S LL + A NV S + TGA
Sbjct: 219 TAGTSDAPSSLPNPLPTAPCVSSLLGMKPIPLLALNVVSAAKGTGA 264
Score = 115 (45.5 bits), Expect = 0.00047, P = 0.00047
Identities = 28/71 (39%), Positives = 43/71 (60%)
Query: 118 NCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGN 177
+ S Q +L IP G +IG+ G KI +IR +SGA +++A+ + ST+R VT+ G+
Sbjct: 103 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV-EGSTDRQVTITGS 161
Query: 178 PDTISQAIYQI 188
+IS A Y I
Sbjct: 162 AASISLAQYLI 172
>UNIPROTKB|F8W0G4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021465
ProteinModelPortal:F8W0G4 SMR:F8W0G4 PRIDE:F8W0G4
Ensembl:ENST00000551104 ArrayExpress:F8W0G4 Bgee:F8W0G4
Uniprot:F8W0G4
Length = 158
Score = 214 (80.4 bits), Expect = 4.7e-26, Sum P(2) = 4.7e-26
Identities = 42/75 (56%), Positives = 53/75 (70%)
Query: 107 EDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPM 166
ED + S P+ L+LV+PA+ CGSLIGKGGCKIK+IR+ +GA VQVA DMLP
Sbjct: 81 EDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN 140
Query: 167 STERIVTVHGNPDTI 181
STER +T+ G P +I
Sbjct: 141 STERAITIAGIPQSI 155
Score = 105 (42.0 bits), Expect = 4.7e-26, Sum P(2) = 4.7e-26
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 15 ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
+T+R L H E+ +IG G V+++R+ESGA+I+I++G CP+RI
Sbjct: 14 LTIRLLMHGK----EVGSIIGKKGESVKKMREESGARINISEGNCPERI 58
Score = 67 (28.6 bits), Expect = 9.7e-08, Sum P(2) = 9.7e-08
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI 323
V +V+ G +IGK G ++ EIR+ +GAQ+ +
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
>UNIPROTKB|D4ADH2 [details] [associations]
symbol:D4ADH2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074311 OrthoDB:EOG46WZ8K IPI:IPI00197192
PRIDE:D4ADH2 Ensembl:ENSRNOT00000026359 OMA:IFHICAV Uniprot:D4ADH2
Length = 311
Score = 232 (86.7 bits), Expect = 5.2e-25, Sum P(2) = 5.2e-25
Identities = 57/129 (44%), Positives = 79/129 (61%)
Query: 129 VIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQI 188
V+PA+ CGSLIGKG KIK+IR+ +GA VQ A +MLP STER +T+ G +I + + QI
Sbjct: 99 VVPASQCGSLIGKG--KIKEIRESTGAQVQAAGNMLPNSTERAITIAGILPSIIECVKQI 156
Query: 189 CLVLIECTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEVAGKKQPHPLA 248
C+V++E + Y PK ++ PVI +GGQA T+ G YA+P ++ K H
Sbjct: 157 CVVMLETPRRA-------YWPKP-SSSPVIFAGGQACTIQGHYAMPQPDLT--KLHHMTH 206
Query: 249 G-LAVLGIE 256
G GIE
Sbjct: 207 GNTGFSGIE 215
Score = 183 (69.5 bits), Expect = 7.0e-16, Sum P(2) = 7.0e-16
Identities = 67/195 (34%), Positives = 93/195 (47%)
Query: 167 STERIVTVHGN--PDTISQAIYQICLV--LIECTLQV-VKGAVIP---YEPKTMNAGPVI 218
ST V GN P++ +AI ++ +IEC Q+ V P Y PK ++ PVI
Sbjct: 120 STGAQVQAAGNMLPNSTERAITIAGILPSIIECVKQICVVMLETPRRAYWPKP-SSSPVI 178
Query: 219 LSGGQAYTLHGEYAVPVQEVAGKKQPHPLAGLAVLGIEGIXXXXXXXXXXXXXXXXRVKS 278
+GGQA T+ G YA+P ++ K H G G GI VK
Sbjct: 179 FAGGQACTIQGHYAMPQPDLT--KLHHMTHGNT--GFSGIESSSP-----------EVKG 223
Query: 279 G-GKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHI 336
G D E+ L +D+ GC+IG+ +++ EIRQ+SGAQI E S + I
Sbjct: 224 YLGLDESAQTTSHELTLPNDLIGCIIGRQDAKINEIRQMSGAQIKTANPVEGSTDRQVTI 283
Query: 337 QGCQEAVSLAQYLIN 351
G ++SLAQYLIN
Sbjct: 284 TGPAASISLAQYLIN 298
Score = 99 (39.9 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 120 SPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPD 179
S Q +L +P G +IG+ KI +IR +SGA ++ A+ + ST+R VT+ G
Sbjct: 230 SAQTTSHELTLPNDLIGCIIGRQDAKINEIRQMSGAQIKTANPV-EGSTDRQVTITGPAA 288
Query: 180 TISQAIYQI 188
+IS A Y I
Sbjct: 289 SISLAQYLI 297
Score = 75 (31.5 bits), Expect = 5.2e-25, Sum P(2) = 5.2e-25
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 15 ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
+T+R L H E+ +I V++L+ E GA+I+I++G CP+RI
Sbjct: 14 LTIRLLMHGK----EVGSIIRKSRESVKKLQ-EKGARINISEGNCPERI 57
Score = 66 (28.3 bits), Expect = 6.0e-15, Sum P(2) = 6.0e-15
Identities = 18/65 (27%), Positives = 34/65 (52%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQ 183
L ++L++ GS+I K +K +++ GA + ++ P ERI+T+ G + I +
Sbjct: 14 LTIRLLMHGKEVGSIIRKSRESVKKLQE-KGARINISEGNCP---ERIITLAGPTNAIFK 69
Query: 184 AIYQI 188
A I
Sbjct: 70 AFAMI 74
>UNIPROTKB|G4N5A5 [details] [associations]
symbol:MGG_16887 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CM001233 GO:GO:0003723
RefSeq:XP_003712769.1 ProteinModelPortal:G4N5A5
EnsemblFungi:MGG_16887T0 GeneID:12985187 KEGG:mgr:MGG_16887
Uniprot:G4N5A5
Length = 370
Score = 180 (68.4 bits), Expect = 3.5e-23, Sum P(3) = 3.5e-23
Identities = 44/112 (39%), Positives = 66/112 (58%)
Query: 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAI 185
+KL+I G++IG+ G KIK I+D+SG + +MLP STER+V V G P+ I +A+
Sbjct: 134 IKLLISHNQMGTIIGRQGLKIKHIQDVSGVRMVAQKEMLPQSTERVVEVQGTPEGIQRAV 193
Query: 186 YQICLVLIECTLQVVKGAVIPYEP--KTMNAGPVIL-SGGQAY--TLHGEYA 232
++IC LI+ Q G V+ Y P +T AG + S G Y + G+Y+
Sbjct: 194 WEICKCLID-DWQRGTGTVL-YNPVVRTQPAGATQMGSSGAGYGTSNRGDYS 243
Score = 129 (50.5 bits), Expect = 3.5e-23, Sum P(3) = 3.5e-23
Identities = 30/90 (33%), Positives = 53/90 (58%)
Query: 282 DTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGT--ESHKKMFHIQGC 339
+ G++ I + D+ GC+IG+AGS++ EIR+ SGA+I+I E+ ++MF I G
Sbjct: 282 ENGEEIQTQNISIPADMVGCIIGRAGSKISEIRKTSGARISIAKAPHDETGERMFTIMGS 341
Query: 340 QEAVSLAQYLINMCIELQKNNTTNTSDNPE 369
+A A +L+ +E +K + + +PE
Sbjct: 342 AKANETALFLLYENLEAEKMRRSQMT-SPE 370
Score = 104 (41.7 bits), Expect = 5.6e-12, Sum P(2) = 5.6e-12
Identities = 32/129 (24%), Positives = 62/129 (48%)
Query: 117 ENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHG 176
E + L ++ ++ + G +IGKGG + D+RD +G V S ++ +R++T+ G
Sbjct: 39 EEYAQAQLTVRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGV-SKVVQGVHDRVLTITG 97
Query: 177 NPDTISQAIYQICLVLIECTLQVVKGAVIPYEPKTMNAGPV--ILSGGQAYTLHGEYAVP 234
+ IS+A + L+E + G V+ P+ ++S Q T+ G +
Sbjct: 98 GCEGISKAYAVVARALLEGAPSMGMGGVV----SNNGTHPIKLLISHNQMGTIIGRQGLK 153
Query: 235 V---QEVAG 240
+ Q+V+G
Sbjct: 154 IKHIQDVSG 162
Score = 60 (26.2 bits), Expect = 3.5e-23, Sum P(3) = 3.5e-23
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 2 DGNGDGKIDED---TLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISIT 55
DG K DE+ +T+R + V+ E +IG GG V LR E+G K ++
Sbjct: 30 DGEPAPKTDEEYAQAQLTVRAI----VSSKEAGVIIGKGGKNVADLRDETGVKAGVS 82
Score = 37 (18.1 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 6/28 (21%), Positives = 17/28 (60%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAKI 52
++ N++ +IG G ++ ++ SG ++
Sbjct: 138 ISHNQMGTIIGRQGLKIKHIQDVSGVRM 165
>UNIPROTKB|D4ACH3 [details] [associations]
symbol:D4ACH3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OrthoDB:EOG46WZ8K IPI:IPI00464805 Ensembl:ENSRNOT00000055302
Uniprot:D4ACH3
Length = 282
Score = 194 (73.4 bits), Expect = 3.0e-21, Sum P(2) = 3.0e-21
Identities = 49/131 (37%), Positives = 77/131 (58%)
Query: 98 AYNFMCRSLEDYHINRNRMEN-C-SPQPLQLKLVI--PATHCGSLIGKGGCKIKD-IRDL 152
A+ + LE+ I ++ + C + + L ++L+ P+ ++I GC+ K+ I
Sbjct: 71 AFAMIIDKLEEDKICSLKVRSICYNKKVLTIRLIFFQPSLKANNIIYISGCREKEVILKS 130
Query: 153 SGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVVKGAVIPYEPKTM 212
+GA VQVA DMLP STER +T+ G P +I + + QIC+V++E KG IPY PK
Sbjct: 131 TGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESP---PKGVTIPYRPKP- 186
Query: 213 NAGPVILSGGQ 223
++ PVI +GGQ
Sbjct: 187 SSSPVIFAGGQ 197
Score = 105 (42.0 bits), Expect = 3.0e-21, Sum P(2) = 3.0e-21
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 15 ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
+T+R L H E+ +IG G V+++R+ESGA+I+I++G CP+RI
Sbjct: 14 LTIRLLMHGK----EVGSIIGKKGESVKKMREESGARINISEGNCPERI 58
Score = 51 (23.0 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 203 AVIPYEPKTMNAGPVILSGG--QAYTLHGEYAVP 234
A P+ +M P L G +AYT+ G+YA+P
Sbjct: 207 ASFPHTTPSMCLNPD-LEGPPLEAYTIQGQYAIP 239
>ASPGD|ASPL0000045500 [details] [associations]
symbol:AN10257 species:162425 "Emericella nidulans"
[GO:0010834 "telomere maintenance via telomere shortening"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:BN001307 GO:GO:0003723
EnsemblFungi:CADANIAT00008760 OMA:ESENNAE Uniprot:C8VLW6
Length = 465
Score = 169 (64.5 bits), Expect = 9.7e-21, Sum P(3) = 9.7e-21
Identities = 50/156 (32%), Positives = 76/156 (48%)
Query: 93 DNVCTAYNFMCRSLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDL 152
D V A+ + R+L + ++ PL +L+IP GS+IGKGG +I++I+D
Sbjct: 162 DAVAKAFGLIIRTLNNEPLDAASTAQSKTYPL--RLLIPHILIGSIIGKGGTRIREIQDA 219
Query: 153 SGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVVKG-AVIPYEPKT 211
SGA + + LP+STER + + G D + A Y + + L+E + G A Y T
Sbjct: 220 SGARLNASDACLPLSTERSLVILGVADAVHIATYYVAVTLVEQLTERFGGPAASAYA--T 277
Query: 212 MNAGPVILSGGQAYTLHGEYAVP-VQEVAGKKQPHP 246
+ GP G G VP V + AG + HP
Sbjct: 278 RSGGPAGAVPG------GMQVVPYVPQPAGGQYGHP 307
Score = 125 (49.1 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
Identities = 26/67 (38%), Positives = 42/67 (62%)
Query: 122 QPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTI 181
QPL ++ IP G++IGKGG KI +IR LSG+ +++ ++ S ER+VT+ G +
Sbjct: 389 QPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKI-NEPQENSNERLVTITGTQECN 447
Query: 182 SQAIYQI 188
A+Y +
Sbjct: 448 QMALYML 454
Score = 121 (47.7 bits), Expect = 9.7e-21, Sum P(3) = 9.7e-21
Identities = 27/82 (32%), Positives = 49/82 (59%)
Query: 279 GGKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQ 337
GG G + +I + +D+ G +IGK G+++ EIR +SG+ I I+ E S++++ I
Sbjct: 383 GGAMPGQPLTQ-QIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQENSNERLVTIT 441
Query: 338 GCQEAVSLAQYLINMCIELQKN 359
G QE +A Y++ +E +K+
Sbjct: 442 GTQECNQMALYMLYSRLESEKH 463
Score = 105 (42.0 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 28/75 (37%), Positives = 41/75 (54%)
Query: 114 NRMENCSPQP----LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTE 169
N+ E PQ + ++ VI + ++IGKGG + IR LSGA V SD + E
Sbjct: 94 NQSEQQRPQDESNWIHIRAVISSQEAATVIGKGGENVSQIRRLSGAKCTV-SDYSRGAVE 152
Query: 170 RIVTVHGNPDTISQA 184
RI+TV G D +++A
Sbjct: 153 RILTVSGPQDAVAKA 167
Score = 80 (33.2 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 298 IAGCVIGKAGSRLLEIRQISGAQINIHTGTE--SHKKMFHIQGCQEAVSLAQYLI 350
+ G +IGK G+R+ EI+ SGA++N S ++ I G +AV +A Y +
Sbjct: 201 LIGSIIGKGGTRIREIQDASGARLNASDACLPLSTERSLVILGVADAVHIATYYV 255
Score = 64 (27.6 bits), Expect = 9.7e-21, Sum P(3) = 9.7e-21
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 10 DEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITD 56
DE I +R + S E + +IG GG V ++R+ SGAK +++D
Sbjct: 103 DESNWIHIRAVISSQ----EAATVIGKGGENVSQIRRLSGAKCTVSD 145
Score = 62 (26.9 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 30 ISCLIGPGGCIVRRLRKESGAKISITDGACP 60
I +IG GG +R ++ SGA+++ +D P
Sbjct: 202 IGSIIGKGGTRIREIQDASGARLNASDACLP 232
>POMBASE|SPCC757.09c [details] [associations]
symbol:rnc1 "RNA-binding protein that suppresses
calcineurin deletion Rnc1" species:4896 "Schizosaccharomyces pombe"
[GO:0003729 "mRNA binding" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0043409 "negative regulation of MAPK cascade" evidence=IGI]
[GO:0048255 "mRNA stabilization" evidence=IMP] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
PomBase:SPCC757.09c GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003729 GO:GO:0048255 GO:GO:0043409
HSSP:Q91WJ8 OrthoDB:EOG4Z65XM eggNOG:NOG315872 PIR:T41600
RefSeq:NP_587684.1 ProteinModelPortal:O74919 STRING:O74919
PRIDE:O74919 EnsemblFungi:SPCC757.09c.1 GeneID:2539434
KEGG:spo:SPCC757.09c HOGENOM:HOG000184255 OMA:NCESIAY
NextBio:20800596 Uniprot:O74919
Length = 398
Score = 158 (60.7 bits), Expect = 1.4e-18, Sum P(3) = 1.4e-18
Identities = 36/102 (35%), Positives = 57/102 (55%)
Query: 92 VDNVCTAYNFMCRSLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRD 151
++NV AY F+ N + + + P +L+L+I + GS+IG+ G +IK I+D
Sbjct: 147 LENVVRAYRFIIDIFAKNSTNPDGTPSDANTPRKLRLLIAHSLMGSIIGRNGLRIKLIQD 206
Query: 152 LSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQI--CLV 191
+ + DMLP STER V +HG D + AI++I CL+
Sbjct: 207 KCSCRMIASKDMLPQSTERTVEIHGTVDNLHAAIWEIGKCLI 248
Score = 119 (46.9 bits), Expect = 1.4e-18, Sum P(3) = 1.4e-18
Identities = 26/78 (33%), Positives = 47/78 (60%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI--HTGTESHKKMFHIQGCQEAVSL 345
V I + D+ GC+IG+ GS++ EIR+ SG++I+I E+ ++MF I G E
Sbjct: 321 VTQNISIPADMVGCIIGRGGSKISEIRRTSGSKISIAKEPHDETGERMFTITGTHEENEK 380
Query: 346 AQYLINMCIELQKNNTTN 363
A +L+ +E++K+ ++
Sbjct: 381 ALFLLYQQLEMEKDRRSH 398
Score = 69 (29.3 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 15/63 (23%), Positives = 31/63 (49%)
Query: 122 QPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTI 181
Q L L+ ++ G +IGK G + ++R + V +P +R++T+ G + +
Sbjct: 92 QQLTLRALLSTREAGIIIGKAGKNVAELRSTTNVKAGVTK-AVPNVHDRVLTISGPLENV 150
Query: 182 SQA 184
+A
Sbjct: 151 VRA 153
Score = 54 (24.1 bits), Expect = 1.4e-18, Sum P(3) = 1.4e-18
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 9 IDEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPD 61
+D+ T T + + ++ E +IG G V LR + K +T A P+
Sbjct: 84 MDDATYATQQLTLRALLSTREAGIIIGKAGKNVAELRSTTNVKAGVTK-AVPN 135
>UNIPROTKB|E1C453 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9031 "Gallus gallus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IEA] [GO:0001077 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity involved in positive
regulation of transcription" evidence=IEA] [GO:0010988 "regulation
of low-density lipoprotein particle clearance" evidence=IEA]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=IEA] [GO:0048260
"positive regulation of receptor-mediated endocytosis"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0072369 "regulation of lipid transport by
positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 CTD:3190
GeneTree:ENSGT00550000074311 KO:K12886 OMA:KALRTDX
InterPro:IPR012987 Pfam:PF08067 EMBL:AADN02064910 EMBL:AADN02064911
IPI:IPI00684854 RefSeq:XP_003643054.1 Ensembl:ENSGALT00000020563
GeneID:427458 KEGG:gga:427458 Uniprot:E1C453
Length = 426
Score = 133 (51.9 bits), Expect = 3.3e-18, Sum P(3) = 3.3e-18
Identities = 33/105 (31%), Positives = 59/105 (56%)
Query: 105 SLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDML 164
+LE+Y + +C +L+L+I + G +IG G KIK++R+ + +++ +
Sbjct: 104 TLEEYQHYKGSDFDC-----ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECC 158
Query: 165 PMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVVKGAVIPYEP 209
P ST+R+V + G PD + + I +I L LI + +KG PY+P
Sbjct: 159 PHSTDRVVLIGGKPDRVVECI-KIILDLI--SESPIKGRAQPYDP 200
Score = 129 (50.5 bits), Expect = 3.3e-18, Sum P(3) = 3.3e-18
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 282 DTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQGCQ 340
D G + T++ + D+AG +IGK G R+ +IR SGA I I E S ++ I G Q
Sbjct: 345 DLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 404
Query: 341 EAVSLAQYLINMCIE 355
+ + AQYL+ ++
Sbjct: 405 DQIQNAQYLLQNSVK 419
Score = 118 (46.6 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 26/60 (43%), Positives = 38/60 (63%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIY 186
++ IP GS+IGKGG +IK IR SGA++++ + L S +RI+T+ G D I A Y
Sbjct: 354 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITITGTQDQIQNAQY 412
Score = 91 (37.1 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 27/89 (30%), Positives = 50/89 (56%)
Query: 115 RMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTV 174
R N + + ++L++++ + + G++IGKGG IK +R A+V V P ERI+++
Sbjct: 32 RSRN-TDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGP---ERILSI 87
Query: 175 HGNPDTISQAIYQICLVLIECTLQVVKGA 203
+ +TI + + +I L E Q KG+
Sbjct: 88 SADIETIGEILKKIIPTLEE--YQHYKGS 114
Score = 71 (30.1 bits), Expect = 3.3e-18, Sum P(3) = 3.3e-18
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 12 DTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
D ++ +R L S N + IG GG ++ LR + A +S+ D + P+RI
Sbjct: 37 DEMVELRILLQSK-NAGAV---IGKGGKNIKALRTDYNASVSVPDSSGPERI 84
Score = 47 (21.6 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 17 MRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACP---DRI 63
+R L H S+ +IG G ++ LR+ + I + CP DR+
Sbjct: 120 LRLLIHQSL----AGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRV 165
>UNIPROTKB|Q5ZIQ3 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005737 GO:GO:0005654
GO:GO:0006355 GO:GO:0008380 GO:GO:0003677 GO:GO:0006397
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:NOG285495
HOGENOM:HOG000019764 HOVERGEN:HBG051916 KO:K12886 OrthoDB:EOG49KFRD
InterPro:IPR012987 Pfam:PF08067 EMBL:AJ720731 IPI:IPI00593692
RefSeq:NP_001026556.1 UniGene:Gga.28787 HSSP:P61978
ProteinModelPortal:Q5ZIQ3 SMR:Q5ZIQ3 STRING:Q5ZIQ3 PRIDE:Q5ZIQ3
GeneID:426516 KEGG:gga:426516 CTD:380255 InParanoid:Q5ZIQ3
NextBio:20828064 Uniprot:Q5ZIQ3
Length = 427
Score = 133 (51.9 bits), Expect = 3.3e-18, Sum P(3) = 3.3e-18
Identities = 33/105 (31%), Positives = 59/105 (56%)
Query: 105 SLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDML 164
+LE+Y + +C +L+L+I + G +IG G KIK++R+ + +++ +
Sbjct: 104 TLEEYQHYKGSDFDC-----ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECC 158
Query: 165 PMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVVKGAVIPYEP 209
P ST+R+V + G PD + + I +I L LI + +KG PY+P
Sbjct: 159 PHSTDRVVLIGGKPDRVVECI-KIILDLI--SESPIKGRAQPYDP 200
Score = 129 (50.5 bits), Expect = 3.3e-18, Sum P(3) = 3.3e-18
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 282 DTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQGCQ 340
D G + T++ + D+AG +IGK G R+ +IR SGA I I E S ++ I G Q
Sbjct: 346 DLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 405
Query: 341 EAVSLAQYLINMCIE 355
+ + AQYL+ ++
Sbjct: 406 DQIQNAQYLLQNSVK 420
Score = 118 (46.6 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 26/60 (43%), Positives = 38/60 (63%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIY 186
++ IP GS+IGKGG +IK IR SGA++++ + L S +RI+T+ G D I A Y
Sbjct: 355 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITITGTQDQIQNAQY 413
Score = 93 (37.8 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 27/89 (30%), Positives = 50/89 (56%)
Query: 115 RMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTV 174
R N + + ++L++++ + + G++IGKGG IK +R A+V V P ERI+++
Sbjct: 32 RSRN-TDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGP---ERILSI 87
Query: 175 HGNPDTISQAIYQICLVLIECTLQVVKGA 203
+ +TI + + +I L E Q KG+
Sbjct: 88 SADTETIGEILKKIIPTLEE--YQHYKGS 114
Score = 71 (30.1 bits), Expect = 3.3e-18, Sum P(3) = 3.3e-18
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 12 DTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
D ++ +R L S N + IG GG ++ LR + A +S+ D + P+RI
Sbjct: 37 DEMVELRILLQSK-NAGAV---IGKGGKNIKALRTDYNASVSVPDSSGPERI 84
Score = 47 (21.6 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 17 MRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACP---DRI 63
+R L H S+ +IG G ++ LR+ + I + CP DR+
Sbjct: 120 LRLLIHQSL----AGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRV 165
>UNIPROTKB|I3LQS0 [details] [associations]
symbol:HNRNPK "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072369 "regulation of lipid transport by positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048260 "positive regulation of receptor-mediated
endocytosis" evidence=IEA] [GO:0045716 "positive regulation of
low-density lipoprotein particle receptor biosynthetic process"
evidence=IEA] [GO:0010988 "regulation of low-density lipoprotein
particle clearance" evidence=IEA] [GO:0001077 "RNA polymerase II
core promoter proximal region sequence-specific DNA binding
transcription factor activity involved in positive regulation of
transcription" evidence=IEA] [GO:0000978 "RNA polymerase II core
promoter proximal region sequence-specific DNA binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GO:GO:0000978 GO:GO:0001077 GO:GO:0000790
GO:GO:0048260 GO:GO:0071013 GO:GO:0045716 GO:GO:0010988
GeneTree:ENSGT00550000074311 OMA:KALRTDX GO:GO:0072369
InterPro:IPR012987 Pfam:PF08067 EMBL:FP312814
Ensembl:ENSSSCT00000025854 Uniprot:I3LQS0
Length = 444
Score = 133 (51.9 bits), Expect = 4.0e-18, Sum P(3) = 4.0e-18
Identities = 29/85 (34%), Positives = 51/85 (60%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQA 184
+L+L+I + G +IG G KIK++R+ + +++ + P ST+R+V + G PD + +
Sbjct: 149 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRVVEC 208
Query: 185 IYQICLVLIECTLQVVKGAVIPYEP 209
I +I L LI + +KG PY+P
Sbjct: 209 I-KIILDLI--SESPIKGRAQPYDP 230
Score = 129 (50.5 bits), Expect = 4.0e-18, Sum P(3) = 4.0e-18
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 282 DTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQGCQ 340
D G + T++ + D+AG +IGK G R+ +IR SGA I I E S ++ I G Q
Sbjct: 363 DLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 422
Query: 341 EAVSLAQYLINMCIE 355
+ + AQYL+ ++
Sbjct: 423 DQIQNAQYLLQNSVK 437
Score = 118 (46.6 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 26/60 (43%), Positives = 38/60 (63%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIY 186
++ IP GS+IGKGG +IK IR SGA++++ + L S +RI+T+ G D I A Y
Sbjct: 372 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITITGTQDQIQNAQY 430
Score = 90 (36.7 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 24/80 (30%), Positives = 46/80 (57%)
Query: 115 RMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTV 174
R N + + ++L++++ + + G++IGKGG IK +R A+V V P ERI+++
Sbjct: 38 RSRN-TDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGP---ERILSI 93
Query: 175 HGNPDTISQAIYQICLVLIE 194
+ +TI + + +I L E
Sbjct: 94 SADIETIGEILKKIIPTLEE 113
Score = 71 (30.1 bits), Expect = 4.0e-18, Sum P(3) = 4.0e-18
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 12 DTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
D ++ +R L S N + IG GG ++ LR + A +S+ D + P+RI
Sbjct: 43 DEMVELRILLQSK-NAGAV---IGKGGKNIKALRTDYNASVSVPDSSGPERI 90
Score = 47 (21.6 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 17 MRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACP---DRI 63
+R L H S+ +IG G ++ LR+ + I + CP DR+
Sbjct: 150 LRLLIHQSL----AGGIIGVKGAKIKELRENTQTTIKLFQECCPQSTDRV 195
>WB|WBGene00017816 [details] [associations]
symbol:F26B1.2b species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0007126 "meiosis" evidence=IMP] [GO:0045132 "meiotic chromosome
segregation" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0009792
GO:GO:0006974 GO:GO:0003723 GO:GO:0045132 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 KO:K12886
HSSP:P61978 EMBL:FO080500 OMA:INPWANG PIR:T30168 RefSeq:NP_740869.1
ProteinModelPortal:P91277 SMR:P91277 DIP:DIP-27318N IntAct:P91277
MINT:MINT-1054372 STRING:P91277 PaxDb:P91277 PRIDE:P91277
EnsemblMetazoa:F26B1.2a GeneID:172330 KEGG:cel:CELE_F26B1.2
UCSC:F26B1.2c.3 CTD:172330 WormBase:F26B1.2a InParanoid:P91277
NextBio:875055 ArrayExpress:P91277 Uniprot:P91277
Length = 397
Score = 132 (51.5 bits), Expect = 4.9e-18, Sum P(3) = 4.9e-18
Identities = 34/112 (30%), Positives = 61/112 (54%)
Query: 115 RME-NCSPQ-PLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIV 172
R+E N S + P ++++++ +H G+LIG+ G KIK++R+ A +++ + P ST+R++
Sbjct: 114 RLEDNFSERDPCEVRMLVHQSHAGALIGRNGSKIKELREKCSARLKIFTGCAPGSTDRVL 173
Query: 173 TVHGNPDTISQAIYQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILS--GG 222
G + I ++ L E +KG+ PY P N P +S GG
Sbjct: 174 ITSGEQKNVLGIIEEVMKELKEIP---IKGSATPYLP-AFNYDPSNISDYGG 221
Score = 131 (51.2 bits), Expect = 4.9e-18, Sum P(3) = 4.9e-18
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 280 GKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTESHKKMFHIQGC 339
G G ++ + D+ G +IG+ G R+ IRQ SGAQI + +++ I+G
Sbjct: 309 GPGGGGPVTTAQVTIPSDLGGTIIGRGGERIARIRQESGAQITLEQSNGQPERIITIKGT 368
Query: 340 QEAVSLAQYLINMCIELQKNNT 361
++ + AQYL+ C+ +N+T
Sbjct: 369 EQQIHSAQYLLQQCV---RNST 387
Score = 84 (34.6 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTI 181
+++L++ + G++IGKGG IK +R A+VQV P ER+ TV + T+
Sbjct: 51 EVRLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDSNTP---ERVCTVTADEKTV 104
Score = 67 (28.6 bits), Expect = 4.9e-18, Sum P(3) = 4.9e-18
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
V+ +IG GG ++RLR E A + + D P+R+
Sbjct: 56 VSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDSNTPERV 94
Score = 57 (25.1 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 19 CLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACP---DRI 63
C V+ + LIG G ++ LR++ A++ I G P DR+
Sbjct: 125 CEVRMLVHQSHAGALIGRNGSKIKELREKCSARLKIFTGCAPGSTDRV 172
>UNIPROTKB|P91277 [details] [associations]
symbol:F26B1.2 "Protein F26B1.2, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0009792 GO:GO:0006974
GO:GO:0003723 GO:GO:0045132 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 KO:K12886
HSSP:P61978 EMBL:FO080500 OMA:INPWANG PIR:T30168 RefSeq:NP_740869.1
ProteinModelPortal:P91277 SMR:P91277 DIP:DIP-27318N IntAct:P91277
MINT:MINT-1054372 STRING:P91277 PaxDb:P91277 PRIDE:P91277
EnsemblMetazoa:F26B1.2a GeneID:172330 KEGG:cel:CELE_F26B1.2
UCSC:F26B1.2c.3 CTD:172330 WormBase:F26B1.2a InParanoid:P91277
NextBio:875055 ArrayExpress:P91277 Uniprot:P91277
Length = 397
Score = 132 (51.5 bits), Expect = 4.9e-18, Sum P(3) = 4.9e-18
Identities = 34/112 (30%), Positives = 61/112 (54%)
Query: 115 RME-NCSPQ-PLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIV 172
R+E N S + P ++++++ +H G+LIG+ G KIK++R+ A +++ + P ST+R++
Sbjct: 114 RLEDNFSERDPCEVRMLVHQSHAGALIGRNGSKIKELREKCSARLKIFTGCAPGSTDRVL 173
Query: 173 TVHGNPDTISQAIYQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILS--GG 222
G + I ++ L E +KG+ PY P N P +S GG
Sbjct: 174 ITSGEQKNVLGIIEEVMKELKEIP---IKGSATPYLP-AFNYDPSNISDYGG 221
Score = 131 (51.2 bits), Expect = 4.9e-18, Sum P(3) = 4.9e-18
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 280 GKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTESHKKMFHIQGC 339
G G ++ + D+ G +IG+ G R+ IRQ SGAQI + +++ I+G
Sbjct: 309 GPGGGGPVTTAQVTIPSDLGGTIIGRGGERIARIRQESGAQITLEQSNGQPERIITIKGT 368
Query: 340 QEAVSLAQYLINMCIELQKNNT 361
++ + AQYL+ C+ +N+T
Sbjct: 369 EQQIHSAQYLLQQCV---RNST 387
Score = 84 (34.6 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTI 181
+++L++ + G++IGKGG IK +R A+VQV P ER+ TV + T+
Sbjct: 51 EVRLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDSNTP---ERVCTVTADEKTV 104
Score = 67 (28.6 bits), Expect = 4.9e-18, Sum P(3) = 4.9e-18
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
V+ +IG GG ++RLR E A + + D P+R+
Sbjct: 56 VSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDSNTPERV 94
Score = 57 (25.1 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 19 CLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACP---DRI 63
C V+ + LIG G ++ LR++ A++ I G P DR+
Sbjct: 125 CEVRMLVHQSHAGALIGRNGSKIKELREKCSARLKIFTGCAPGSTDRV 172
>UNIPROTKB|Q3T0D0 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0072369 "regulation of
lipid transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048260 "positive regulation of
receptor-mediated endocytosis" evidence=IEA] [GO:0045716 "positive
regulation of low-density lipoprotein particle receptor
biosynthetic process" evidence=IEA] [GO:0010988 "regulation of
low-density lipoprotein particle clearance" evidence=IEA]
[GO:0001077 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity
involved in positive regulation of transcription" evidence=IEA]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0006397 GO:GO:0003723
GO:GO:0000978 GO:GO:0001077 GO:GO:0000790 GO:GO:0048260
GO:GO:0071013 GO:GO:0045716 GO:GO:0010988 EMBL:BC102450
IPI:IPI00696554 RefSeq:NP_001029734.1 UniGene:Bt.47688
ProteinModelPortal:Q3T0D0 SMR:Q3T0D0 STRING:Q3T0D0 PRIDE:Q3T0D0
Ensembl:ENSBTAT00000028162 GeneID:528135 KEGG:bta:528135 CTD:3190
eggNOG:NOG285495 GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764
HOVERGEN:HBG051916 InParanoid:Q3T0D0 KO:K12886 OMA:KALRTDX
OrthoDB:EOG49KFRD NextBio:20874747 GO:GO:0072369 InterPro:IPR012987
Pfam:PF08067 Uniprot:Q3T0D0
Length = 464
Score = 133 (51.9 bits), Expect = 5.0e-18, Sum P(3) = 5.0e-18
Identities = 29/85 (34%), Positives = 51/85 (60%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQA 184
+L+L+I + G +IG G KIK++R+ + +++ + P ST+R+V + G PD + +
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRVVEC 205
Query: 185 IYQICLVLIECTLQVVKGAVIPYEP 209
I +I L LI + +KG PY+P
Sbjct: 206 I-KIILDLI--SESPIKGRAQPYDP 227
Score = 129 (50.5 bits), Expect = 5.0e-18, Sum P(3) = 5.0e-18
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 282 DTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQGCQ 340
D G + T++ + D+AG +IGK G R+ +IR SGA I I E S ++ I G Q
Sbjct: 382 DLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 441
Query: 341 EAVSLAQYLINMCIE 355
+ + AQYL+ ++
Sbjct: 442 DQIQNAQYLLQNSVK 456
Score = 118 (46.6 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 26/60 (43%), Positives = 38/60 (63%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIY 186
++ IP GS+IGKGG +IK IR SGA++++ + L S +RI+T+ G D I A Y
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITITGTQDQIQNAQY 449
Score = 92 (37.4 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 30/103 (29%), Positives = 53/103 (51%)
Query: 94 NVCTAYNFMCRSLEDYHINR--NRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRD 151
N T F R ED + R N + + ++L++++ + + G++IGKGG IK +R
Sbjct: 12 NTETNGEFGKRPAEDMEEEQAFKRSRN-TDEMVELRILLQSKNAGAVIGKGGKNIKALRT 70
Query: 152 LSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIE 194
A+V V P ERI+++ + +TI + + +I L E
Sbjct: 71 DYNASVSVPDSSGP---ERILSISADIETIGEILKKIIPTLEE 110
Score = 71 (30.1 bits), Expect = 5.0e-18, Sum P(3) = 5.0e-18
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 12 DTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
D ++ +R L S N + IG GG ++ LR + A +S+ D + P+RI
Sbjct: 40 DEMVELRILLQSK-NAGAV---IGKGGKNIKALRTDYNASVSVPDSSGPERI 87
Score = 47 (21.6 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 17 MRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACP---DRI 63
+R L H S+ +IG G ++ LR+ + I + CP DR+
Sbjct: 147 LRLLIHQSL----AGGIIGVKGAKIKELRENTQTTIKLFQECCPQSTDRV 192
>UNIPROTKB|H9L242 [details] [associations]
symbol:HNRPK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 InterPro:IPR012987
Pfam:PF08067 OMA:INPWANG EMBL:AADN02078253 EMBL:AADN02078254
EMBL:AADN02078255 Ensembl:ENSGALT00000035757 Uniprot:H9L242
Length = 427
Score = 131 (51.2 bits), Expect = 5.7e-18, Sum P(3) = 5.7e-18
Identities = 31/105 (29%), Positives = 57/105 (54%)
Query: 105 SLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDML 164
+LE+Y + +C +L+L+I + G +IG G KIK++R+ + +++ +
Sbjct: 104 TLEEYQHYKGSDFDC-----ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECC 158
Query: 165 PMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVVKGAVIPYEP 209
P ST+R+V + G PD + + I I ++ E +KG PY+P
Sbjct: 159 PHSTDRVVLIGGKPDRVVECIKIILDLIFESP---IKGRAQPYDP 200
Score = 129 (50.5 bits), Expect = 5.7e-18, Sum P(3) = 5.7e-18
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 282 DTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQGCQ 340
D G + T++ + D+AG +IGK G R+ +IR SGA I I E S ++ I G Q
Sbjct: 346 DLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 405
Query: 341 EAVSLAQYLINMCIE 355
+ + AQYL+ ++
Sbjct: 406 DQIQNAQYLLQNSVK 420
Score = 118 (46.6 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 26/60 (43%), Positives = 38/60 (63%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIY 186
++ IP GS+IGKGG +IK IR SGA++++ + L S +RI+T+ G D I A Y
Sbjct: 355 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITITGTQDQIQNAQY 413
Score = 93 (37.8 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 27/89 (30%), Positives = 50/89 (56%)
Query: 115 RMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTV 174
R N + + ++L++++ + + G++IGKGG IK +R A+V V P ERI+++
Sbjct: 32 RSRN-TDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGP---ERILSI 87
Query: 175 HGNPDTISQAIYQICLVLIECTLQVVKGA 203
+ +TI + + +I L E Q KG+
Sbjct: 88 SADTETIGEILKKIIPTLEE--YQHYKGS 114
Score = 71 (30.1 bits), Expect = 5.7e-18, Sum P(3) = 5.7e-18
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 12 DTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
D ++ +R L S N + IG GG ++ LR + A +S+ D + P+RI
Sbjct: 37 DEMVELRILLQSK-NAGAV---IGKGGKNIKALRTDYNASVSVPDSSGPERI 84
Score = 47 (21.6 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 17 MRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACP---DRI 63
+R L H S+ +IG G ++ LR+ + I + CP DR+
Sbjct: 120 LRLLIHQSL----AGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRV 165
>ZFIN|ZDB-GENE-040426-1923 [details] [associations]
symbol:hnrpkl "heterogeneous nuclear
ribonucleoprotein K, like" species:7955 "Danio rerio" [GO:0003723
"RNA binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-040426-1923 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG051916 InterPro:IPR012987 Pfam:PF08067 EMBL:BC096867
IPI:IPI00493887 UniGene:Dr.47275 ProteinModelPortal:Q4V9J6
SMR:Q4V9J6 STRING:Q4V9J6 InParanoid:Q4V9J6 NextBio:20817897
ArrayExpress:Q4V9J6 Uniprot:Q4V9J6
Length = 431
Score = 132 (51.5 bits), Expect = 5.8e-18, Sum P(3) = 5.8e-18
Identities = 30/84 (35%), Positives = 47/84 (55%)
Query: 277 KSGGK----DTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHK 331
+SGG+ D G + T++ + D+AG +IGK G R+ +IR SGA I I E S
Sbjct: 341 QSGGRGSYSDIGGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSED 400
Query: 332 KMFHIQGCQEAVSLAQYLINMCIE 355
++ I G Q+ + AQYL+ ++
Sbjct: 401 RIITITGTQDQIQNAQYLLQNSVK 424
Score = 128 (50.1 bits), Expect = 5.8e-18, Sum P(3) = 5.8e-18
Identities = 27/85 (31%), Positives = 49/85 (57%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQA 184
+L+L+I + G +IG G KIK++R+ + +++ + P ST+R+V V G P+ + +
Sbjct: 123 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLVGGKPERVVEC 182
Query: 185 IYQICLVLIECTLQVVKGAVIPYEP 209
I I ++ E +KG PY+P
Sbjct: 183 IKVILELIAEAP---IKGRAQPYDP 204
Score = 118 (46.6 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 26/60 (43%), Positives = 38/60 (63%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIY 186
++ IP GS+IGKGG +IK IR SGA++++ + L S +RI+T+ G D I A Y
Sbjct: 359 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITITGTQDQIQNAQY 417
Score = 94 (38.1 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 115 RMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTV 174
R N + + ++L++++ + + G++IGKGG IK +R A+V V P ERI++V
Sbjct: 36 RSRN-TDEMVELRVLLRSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGP---ERILSV 91
Query: 175 HGNPDTISQAIYQICLVLIE 194
+ DTI + + +I L E
Sbjct: 92 SADIDTIGEILLKIIPTLEE 111
Score = 71 (30.1 bits), Expect = 5.8e-18, Sum P(3) = 5.8e-18
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 12 DTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
D ++ +R L S N + IG GG ++ LR + A +S+ D + P+RI
Sbjct: 41 DEMVELRVLLRSK-NAGAV---IGKGGKNIKALRTDYNASVSVPDSSGPERI 88
Score = 47 (21.6 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 17 MRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACP---DRI 63
+R L H S+ +IG G ++ LR+ + I + CP DR+
Sbjct: 124 LRLLIHQSL----AGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRV 169
>ZFIN|ZDB-GENE-040426-1926 [details] [associations]
symbol:hnrnpk "heterogeneous nuclear
ribonucleoprotein K" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-040426-1926 GO:GO:0003723 CTD:3190
GeneTree:ENSGT00550000074311 InterPro:IPR012987 Pfam:PF08067
EMBL:CR376792 EMBL:CU682767 IPI:IPI00865147 RefSeq:NP_998159.2
UniGene:Dr.106469 UniGene:Dr.122250 Ensembl:ENSDART00000097919
GeneID:406267 KEGG:dre:406267 NextBio:20817900 ArrayExpress:F1QWB4
Bgee:F1QWB4 Uniprot:F1QWB4
Length = 429
Score = 131 (51.2 bits), Expect = 5.8e-18, Sum P(3) = 5.8e-18
Identities = 31/105 (29%), Positives = 58/105 (55%)
Query: 105 SLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDML 164
+LE+Y ++ +C +L+L+I + GS+IG G KIK++RD + +++ +
Sbjct: 107 TLEEYQHHKGVDFDC-----ELRLLIHQSLAGSIIGLKGAKIKELRDSTQTTIKLFQECC 161
Query: 165 PMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVVKGAVIPYEP 209
P ST+R+V V G + + Q I + +++E +KG Y+P
Sbjct: 162 PQSTDRVVLVGGKAERVVQCIKTMLELIVEAP---IKGRAQQYDP 203
Score = 129 (50.5 bits), Expect = 5.8e-18, Sum P(3) = 5.8e-18
Identities = 30/84 (35%), Positives = 48/84 (57%)
Query: 277 KSGGKDTGDD--FVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKM 333
+SGG+ + D + T++ + D+AG +IGK G R+ +IR SGA I I + S ++
Sbjct: 341 QSGGRSSYSDGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLQGSEDRI 400
Query: 334 FHIQGCQEAVSLAQYLI-NMCIEL 356
I G Q+ + AQYL+ N + L
Sbjct: 401 ITITGTQDQIQNAQYLLQNSALHL 424
Score = 118 (46.6 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 26/60 (43%), Positives = 38/60 (63%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIY 186
++ IP GS+IGKGG +IK IR SGA++++ + L S +RI+T+ G D I A Y
Sbjct: 357 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLQGSEDRIITITGTQDQIQNAQY 415
Score = 93 (37.8 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 28/93 (30%), Positives = 50/93 (53%)
Query: 104 RSLEDYHINR--NRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS 161
RS +D + R N S + ++L++++ + + G++IGKGG IK +R A V V
Sbjct: 22 RSADDSEEEKPYKRSRN-SDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNATVSVPD 80
Query: 162 DMLPMSTERIVTVHGNPDTISQAIYQICLVLIE 194
P ERI++V + T+++ + +I L E
Sbjct: 81 SSGP---ERILSVSADIPTVAEILLKIIPTLEE 110
Score = 71 (30.1 bits), Expect = 5.8e-18, Sum P(3) = 5.8e-18
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 10 DEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
+ D ++ +R L S N + IG GG ++ LR + A +S+ D + P+RI
Sbjct: 38 NSDEMVELRILLQSK-NAGAV---IGKGGKNIKALRTDYNATVSVPDSSGPERI 87
Score = 46 (21.3 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 17 MRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACP---DRI 63
+R L H S+ +IG G ++ LR + I + CP DR+
Sbjct: 123 LRLLIHQSL----AGSIIGLKGAKIKELRDSTQTTIKLFQECCPQSTDRV 168
>ASPGD|ASPL0000075803 [details] [associations]
symbol:AN4546 species:162425 "Emericella nidulans"
[GO:0005829 "cytosol" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0043409 "negative regulation of MAPK cascade"
evidence=IEA] [GO:0048255 "mRNA stabilization" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:BN001303 EMBL:AACD01000078
OrthoDB:EOG4Z65XM eggNOG:NOG315872 HOGENOM:HOG000184255
RefSeq:XP_662150.1 ProteinModelPortal:Q5B4I4
EnsemblFungi:CADANIAT00005892 GeneID:2872347 KEGG:ani:AN4546.2
OMA:AQANEKA Uniprot:Q5B4I4
Length = 542
Score = 158 (60.7 bits), Expect = 5.9e-18, Sum P(3) = 5.9e-18
Identities = 38/102 (37%), Positives = 60/102 (58%)
Query: 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAI 185
++L+I G++IG+ G KIK I+D SG + +MLP STERIV V G P+ I +AI
Sbjct: 315 IRLLISHNQMGTIIGRQGLKIKHIQDASGVRMVAQKEMLPQSTERIVEVQGTPEGIEKAI 374
Query: 186 YQICLVLIECTLQVVKGAVIPYEP---KTMNAGPVILSGGQA 224
++I LI+ Q G ++ Y P ++ +G + +GG +
Sbjct: 375 WEIGKCLID-DWQRGTGTIL-YNPAVRSSVGSGSIQHNGGNS 414
Score = 124 (48.7 bits), Expect = 5.9e-18, Sum P(3) = 5.9e-18
Identities = 27/87 (31%), Positives = 49/87 (56%)
Query: 282 DTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGT--ESHKKMFHIQGC 339
+ G++ I + D+ GC+IG+ G+++ EIR+ SGA+I+I E+ ++MF I G
Sbjct: 456 EDGEEIQTQNISIPADMVGCIIGRGGTKITEIRRSSGARISIAKAPHDETGERMFTIMGS 515
Query: 340 QEAVSLAQYLINMCIELQKNNTTNTSD 366
+A A YL+ +E +K + +
Sbjct: 516 AQANEKALYLLYENLEAEKTRRSQLQE 542
Score = 99 (39.9 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 30/133 (22%), Positives = 60/133 (45%)
Query: 108 DYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMS 167
D + E + L L+ ++ + G +IGK G + D+RD +G V S ++P
Sbjct: 211 DLEVAPKTEEEYAQSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGV-SKVVPGV 269
Query: 168 TERIVTVHGNPDTISQAIYQICLVLIECTLQVVKGAVIPYEPKTMNAGPV--ILSGGQAY 225
+R++TV G ++A + L+E Q+ G ++ P+ ++S Q
Sbjct: 270 HDRVLTVTGALSGTARAYALVAKGLLEGAPQMGMGGIV----SNNGTHPIRLLISHNQMG 325
Query: 226 TLHGEYAVPVQEV 238
T+ G + ++ +
Sbjct: 326 TIIGRQGLKIKHI 338
Score = 50 (22.7 bits), Expect = 5.9e-18, Sum P(3) = 5.9e-18
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 13 TLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISIT 55
+++T+R + V+ E +IG G V LR E+G K ++
Sbjct: 225 SMLTLRAI----VSSKEAGVIIGKAGKNVADLRDETGVKAGVS 263
Score = 38 (18.4 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 6/28 (21%), Positives = 17/28 (60%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAKI 52
++ N++ +IG G ++ ++ SG ++
Sbjct: 319 ISHNQMGTIIGRQGLKIKHIQDASGVRM 346
>SGD|S000000437 [details] [associations]
symbol:PBP2 "RNA binding protein" species:4932 "Saccharomyces
cerevisiae" [GO:0010834 "telomere maintenance via telomere
shortening" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 SGD:S000000437 GO:GO:0005634 GO:GO:0005737
GO:GO:0003729 EMBL:BK006936 GO:GO:0030529 RefSeq:NP_009792.3
GeneID:852533 KEGG:sce:YBR233W GeneTree:ENSGT00550000074311
KO:K00565 RefSeq:NP_009795.3 GeneID:852538 KEGG:sce:YBR236C
EMBL:Z36101 PIR:S46109 ProteinModelPortal:P38151 SMR:P38151
DIP:DIP-4947N IntAct:P38151 MINT:MINT-570424 STRING:P38151
PaxDb:P38151 EnsemblFungi:YBR233W CYGD:YBR233w eggNOG:NOG315872
HOGENOM:HOG000000730 OMA:GKHINSV OrthoDB:EOG4CRQ87 NextBio:971589
Genevestigator:P38151 GermOnline:YBR233W GO:GO:0010834
Uniprot:P38151
Length = 413
Score = 167 (63.8 bits), Expect = 6.2e-18, Sum P(3) = 6.2e-18
Identities = 45/151 (29%), Positives = 79/151 (52%)
Query: 81 GYPGHTLWVTSV-DNVCTAYNFMCRSLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLI 139
G P ++V D+V AY + R+L + H N + E+ + + L+IP G +I
Sbjct: 108 GVPERIVYVRGTCDDVAKAYGMIVRALLEEHGNEDNGEDIE---ISINLLIPHHLMGCII 164
Query: 140 GKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQV 199
GK G ++++I DLS A + + + L +S +RI+T++G PD I A + I L+ ++
Sbjct: 165 GKRGSRLREIEDLSAAKLFASPNQLLLSNDRILTINGVPDAIHIATFYISQTLLNFQMES 224
Query: 200 VKGAV---IPYEPKTMNAGPVILSGGQAYTL 227
+ V I Y+P N+ V++ Q T+
Sbjct: 225 PQKNVKRSIYYQPTQFNS--VLIDHSQPNTI 253
Score = 107 (42.7 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
Identities = 23/79 (29%), Positives = 43/79 (54%)
Query: 279 GGKDTGDDF-VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE--SHKKMFH 335
G +D G+D + +++ + GC+IGK GSRL EI +S A++ S+ ++
Sbjct: 139 GNEDNGEDIEISINLLIPHHLMGCIIGKRGSRLREIEDLSAAKLFASPNQLLLSNDRILT 198
Query: 336 IQGCQEAVSLAQYLINMCI 354
I G +A+ +A + I+ +
Sbjct: 199 INGVPDAIHIATFYISQTL 217
Score = 93 (37.8 bits), Expect = 6.2e-18, Sum P(3) = 6.2e-18
Identities = 25/84 (29%), Positives = 42/84 (50%)
Query: 286 DFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQGCQEAVS 344
+FV+ EI + + G VIGK G + +++ +G I I E S ++ I+G A
Sbjct: 329 NFVQQEIFIDEKFVGNVIGKDGKHINSVKESTGCSIIIQDPVEGSSERRLTIRGTFMASQ 388
Query: 345 LAQYLINMCIELQKNNTTNTSDNP 368
A LI+ IE+ ++N +P
Sbjct: 389 AAIMLISNKIEIDRSNAERKRRSP 412
Score = 82 (33.9 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
Identities = 19/74 (25%), Positives = 38/74 (51%)
Query: 121 PQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDT 180
P + L+++ H ++G G I I+ + A + +++++ + ERIV V G D
Sbjct: 64 PSDVHLRMLCLVKHASLIVGHKGATISRIKSETSARINISNNIRGVP-ERIVYVRGTCDD 122
Query: 181 ISQAIYQICLVLIE 194
+++A I L+E
Sbjct: 123 VAKAYGMIVRALLE 136
Score = 64 (27.6 bits), Expect = 6.2e-18, Sum P(3) = 6.2e-18
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 2 DGNGDGKIDEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDG--AC 59
D + + D + M CL V S ++G G + R++ E+ A+I+I++
Sbjct: 56 DHDSPDNVPSDVHLRMLCL------VKHASLIVGHKGATISRIKSETSARINISNNIRGV 109
Query: 60 PDRI 63
P+RI
Sbjct: 110 PERI 113
>UNIPROTKB|H9L0I0 [details] [associations]
symbol:HNRPK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 InterPro:IPR012987
Pfam:PF08067 EMBL:AADN02078253 EMBL:AADN02078254 EMBL:AADN02078255
Ensembl:ENSGALT00000023210 Uniprot:H9L0I0
Length = 426
Score = 131 (51.2 bits), Expect = 7.2e-18, Sum P(3) = 7.2e-18
Identities = 31/105 (29%), Positives = 57/105 (54%)
Query: 105 SLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDML 164
+LE+Y + +C +L+L+I + G +IG G KIK++R+ + +++ +
Sbjct: 104 TLEEYQHYKGSDFDC-----ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECC 158
Query: 165 PMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVVKGAVIPYEP 209
P ST+R+V + G PD + + I I ++ E +KG PY+P
Sbjct: 159 PHSTDRVVLIGGKPDRVVECIKIILDLIFESP---IKGRAQPYDP 200
Score = 128 (50.1 bits), Expect = 7.2e-18, Sum P(3) = 7.2e-18
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 282 DTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQGCQ 340
D G + T++ + D+AG +IGK G R+ +IR SGA I I E S ++ I G Q
Sbjct: 346 DLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 405
Query: 341 EAVSLAQYLI 350
+ + AQYL+
Sbjct: 406 DQIQNAQYLL 415
Score = 118 (46.6 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 26/60 (43%), Positives = 38/60 (63%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIY 186
++ IP GS+IGKGG +IK IR SGA++++ + L S +RI+T+ G D I A Y
Sbjct: 355 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITITGTQDQIQNAQY 413
Score = 93 (37.8 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 27/89 (30%), Positives = 50/89 (56%)
Query: 115 RMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTV 174
R N + + ++L++++ + + G++IGKGG IK +R A+V V P ERI+++
Sbjct: 32 RSRN-TDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGP---ERILSI 87
Query: 175 HGNPDTISQAIYQICLVLIECTLQVVKGA 203
+ +TI + + +I L E Q KG+
Sbjct: 88 SADTETIGEILKKIIPTLEE--YQHYKGS 114
Score = 71 (30.1 bits), Expect = 7.2e-18, Sum P(3) = 7.2e-18
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 12 DTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
D ++ +R L S N + IG GG ++ LR + A +S+ D + P+RI
Sbjct: 37 DEMVELRILLQSK-NAGAV---IGKGGKNIKALRTDYNASVSVPDSSGPERI 84
Score = 47 (21.6 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 17 MRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACP---DRI 63
+R L H S+ +IG G ++ LR+ + I + CP DR+
Sbjct: 120 LRLLIHQSL----AGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRV 165
>UNIPROTKB|P61978 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0007165 "signal transduction" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=IMP] [GO:0072369
"regulation of lipid transport by positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0048260 "positive regulation of receptor-mediated endocytosis"
evidence=IMP] [GO:0010988 "regulation of low-density lipoprotein
particle clearance" evidence=IMP] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IMP] [GO:0001077 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity involved in positive
regulation of transcription" evidence=IMP] [GO:0003697
"single-stranded DNA binding" evidence=TAS] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0019048 GO:GO:0007165
GO:GO:0005654 Reactome:REACT_1675 GO:GO:0003723 GO:GO:0000978
GO:GO:0001077 GO:GO:0000790 GO:GO:0003697 EMBL:CH471089
GO:GO:0048260 GO:GO:0000398 GO:GO:0071013 EMBL:AL354733
GO:GO:0045716 GO:GO:0010988 CTD:3190 eggNOG:NOG285495
HOVERGEN:HBG051916 KO:K12886 OMA:KALRTDX OrthoDB:EOG49KFRD
GO:GO:0072369 InterPro:IPR012987 Pfam:PF08067 EMBL:S74678
EMBL:X72727 EMBL:AB209562 EMBL:BC000355 EMBL:BC014980
IPI:IPI00216049 IPI:IPI00216746 IPI:IPI00807545 PIR:S43363
RefSeq:NP_002131.2 RefSeq:NP_112552.1 RefSeq:NP_112553.1
UniGene:Hs.522257 PDB:1J5K PDB:1KHM PDB:1ZZI PDB:1ZZJ PDB:1ZZK
PDBsum:1J5K PDBsum:1KHM PDBsum:1ZZI PDBsum:1ZZJ PDBsum:1ZZK
ProteinModelPortal:P61978 SMR:P61978 DIP:DIP-31805N IntAct:P61978
MINT:MINT-225422 STRING:P61978 PhosphoSite:P61978 DMDM:48429103
SWISS-2DPAGE:P61978 PaxDb:P61978 PRIDE:P61978 DNASU:3190
Ensembl:ENST00000351839 Ensembl:ENST00000360384
Ensembl:ENST00000376263 Ensembl:ENST00000376264
Ensembl:ENST00000376268 Ensembl:ENST00000376281 GeneID:3190
KEGG:hsa:3190 UCSC:uc004ang.4 UCSC:uc004anh.4 GeneCards:GC09M086582
HGNC:HGNC:5044 HPA:CAB004435 HPA:CAB016225 HPA:HPA007644 MIM:600712
neXtProt:NX_P61978 PharmGKB:PA162391350 ChEMBL:CHEMBL3469
ChiTaRS:HNRNPK EvolutionaryTrace:P61978 GenomeRNAi:3190
NextBio:12686 PMAP-CutDB:P61978 ArrayExpress:P61978 Bgee:P61978
CleanEx:HS_HNRNPK Genevestigator:P61978 GermOnline:ENSG00000165119
Uniprot:P61978
Length = 463
Score = 131 (51.2 bits), Expect = 8.5e-18, Sum P(3) = 8.5e-18
Identities = 29/85 (34%), Positives = 51/85 (60%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQA 184
+L+L+I + G +IG G KIK++R+ + +++ + P ST+R+V + G PD + +
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVEC 205
Query: 185 IYQICLVLIECTLQVVKGAVIPYEP 209
I +I L LI + +KG PY+P
Sbjct: 206 I-KIILDLI--SESPIKGRAQPYDP 227
Score = 129 (50.5 bits), Expect = 8.5e-18, Sum P(3) = 8.5e-18
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 282 DTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQGCQ 340
D G + T++ + D+AG +IGK G R+ +IR SGA I I E S ++ I G Q
Sbjct: 382 DLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 441
Query: 341 EAVSLAQYLINMCIE 355
+ + AQYL+ ++
Sbjct: 442 DQIQNAQYLLQNSVK 456
Score = 118 (46.6 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 26/60 (43%), Positives = 38/60 (63%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIY 186
++ IP GS+IGKGG +IK IR SGA++++ + L S +RI+T+ G D I A Y
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITITGTQDQIQNAQY 449
Score = 92 (37.4 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 30/103 (29%), Positives = 53/103 (51%)
Query: 94 NVCTAYNFMCRSLEDYHINR--NRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRD 151
N T F R ED + R N + + ++L++++ + + G++IGKGG IK +R
Sbjct: 12 NTETNGEFGKRPAEDMEEEQAFKRSRN-TDEMVELRILLQSKNAGAVIGKGGKNIKALRT 70
Query: 152 LSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIE 194
A+V V P ERI+++ + +TI + + +I L E
Sbjct: 71 DYNASVSVPDSSGP---ERILSISADIETIGEILKKIIPTLEE 110
Score = 71 (30.1 bits), Expect = 8.5e-18, Sum P(3) = 8.5e-18
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 12 DTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
D ++ +R L S N + IG GG ++ LR + A +S+ D + P+RI
Sbjct: 40 DEMVELRILLQSK-NAGAV---IGKGGKNIKALRTDYNASVSVPDSSGPERI 87
Score = 47 (21.6 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 17 MRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACP---DRI 63
+R L H S+ +IG G ++ LR+ + I + CP DR+
Sbjct: 147 LRLLIHQSL----AGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRV 192
>MGI|MGI:99894 [details] [associations]
symbol:Hnrnpk "heterogeneous nuclear ribonucleoprotein K"
species:10090 "Mus musculus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0000978 "RNA polymerase II core promoter proximal
region sequence-specific DNA binding" evidence=ISO] [GO:0001077
"RNA polymerase II core promoter proximal region sequence-specific
DNA binding transcription factor activity involved in positive
regulation of transcription" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010988
"regulation of low-density lipoprotein particle clearance"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0042981 "regulation of apoptotic process" evidence=IMP]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0048260 "positive regulation of
receptor-mediated endocytosis" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] [GO:0072369 "regulation of lipid
transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
MGI:MGI:99894 GO:GO:0005737 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0006397 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 CTD:3190 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOVERGEN:HBG051916 KO:K12886
OMA:KALRTDX InterPro:IPR012987 Pfam:PF08067 EMBL:L31961
EMBL:AK011428 EMBL:AK051313 EMBL:AK078777 EMBL:AK088462
EMBL:BC006694 IPI:IPI00224575 IPI:IPI00890005 IPI:IPI00990152
RefSeq:NP_079555.1 UniGene:Mm.142872 ProteinModelPortal:P61979
SMR:P61979 IntAct:P61979 STRING:P61979 PhosphoSite:P61979
REPRODUCTION-2DPAGE:IPI00223253 REPRODUCTION-2DPAGE:P61979
PaxDb:P61979 PRIDE:P61979 Ensembl:ENSMUST00000043269
Ensembl:ENSMUST00000116403 Ensembl:ENSMUST00000176207 GeneID:15387
KEGG:mmu:15387 UCSC:uc007qtw.1 UCSC:uc007qty.1 NextBio:288062
Bgee:P61979 Genevestigator:P61979 GermOnline:ENSMUSG00000063902
Uniprot:P61979
Length = 463
Score = 131 (51.2 bits), Expect = 8.5e-18, Sum P(3) = 8.5e-18
Identities = 29/85 (34%), Positives = 51/85 (60%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQA 184
+L+L+I + G +IG G KIK++R+ + +++ + P ST+R+V + G PD + +
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVEC 205
Query: 185 IYQICLVLIECTLQVVKGAVIPYEP 209
I +I L LI + +KG PY+P
Sbjct: 206 I-KIILDLI--SESPIKGRAQPYDP 227
Score = 129 (50.5 bits), Expect = 8.5e-18, Sum P(3) = 8.5e-18
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 282 DTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQGCQ 340
D G + T++ + D+AG +IGK G R+ +IR SGA I I E S ++ I G Q
Sbjct: 382 DLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 441
Query: 341 EAVSLAQYLINMCIE 355
+ + AQYL+ ++
Sbjct: 442 DQIQNAQYLLQNSVK 456
Score = 118 (46.6 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 26/60 (43%), Positives = 38/60 (63%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIY 186
++ IP GS+IGKGG +IK IR SGA++++ + L S +RI+T+ G D I A Y
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITITGTQDQIQNAQY 449
Score = 92 (37.4 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 30/103 (29%), Positives = 53/103 (51%)
Query: 94 NVCTAYNFMCRSLEDYHINR--NRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRD 151
N T F R ED + R N + + ++L++++ + + G++IGKGG IK +R
Sbjct: 12 NTETNGEFGKRPAEDMEEEQAFKRSRN-TDEMVELRILLQSKNAGAVIGKGGKNIKALRT 70
Query: 152 LSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIE 194
A+V V P ERI+++ + +TI + + +I L E
Sbjct: 71 DYNASVSVPDSSGP---ERILSISADIETIGEILKKIIPTLEE 110
Score = 71 (30.1 bits), Expect = 8.5e-18, Sum P(3) = 8.5e-18
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 12 DTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
D ++ +R L S N + IG GG ++ LR + A +S+ D + P+RI
Sbjct: 40 DEMVELRILLQSK-NAGAV---IGKGGKNIKALRTDYNASVSVPDSSGPERI 87
Score = 47 (21.6 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 17 MRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACP---DRI 63
+R L H S+ +IG G ++ LR+ + I + CP DR+
Sbjct: 147 LRLLIHQSL----AGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRV 192
>RGD|71058 [details] [associations]
symbol:Hnrnpk "heterogeneous nuclear ribonucleoprotein K"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=IEA;ISO] [GO:0000978 "RNA polymerase II core promoter
proximal region sequence-specific DNA binding" evidence=IEA;ISO]
[GO:0001077 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity involved
in positive regulation of transcription" evidence=IEA;ISO]
[GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010988 "regulation of low-density
lipoprotein particle clearance" evidence=IEA;ISO] [GO:0042981
"regulation of apoptotic process" evidence=ISO] [GO:0045716
"positive regulation of low-density lipoprotein particle receptor
biosynthetic process" evidence=IEA;ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048260 "positive regulation of receptor-mediated
endocytosis" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072369 "regulation of lipid
transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 RGD:71058 GO:GO:0005737 GO:GO:0005654
GO:GO:0006355 GO:GO:0008380 GO:GO:0006397 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0003697 CTD:3190 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 HOVERGEN:HBG051916
KO:K12886 InterPro:IPR012987 Pfam:PF08067 EMBL:D17711
IPI:IPI00780608 PIR:S41495 RefSeq:NP_476482.1 UniGene:Rn.11854
ProteinModelPortal:P61980 SMR:P61980 IntAct:P61980 MINT:MINT-1505757
STRING:P61980 PhosphoSite:P61980 World-2DPAGE:0004:P61980
PRIDE:P61980 Ensembl:ENSRNOT00000025916 GeneID:117282
KEGG:rno:117282 UCSC:RGD:71058 InParanoid:P61980 NextBio:620239
ArrayExpress:P61980 Genevestigator:P61980
GermOnline:ENSRNOG00000019113 Uniprot:P61980
Length = 463
Score = 131 (51.2 bits), Expect = 8.5e-18, Sum P(3) = 8.5e-18
Identities = 29/85 (34%), Positives = 51/85 (60%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQA 184
+L+L+I + G +IG G KIK++R+ + +++ + P ST+R+V + G PD + +
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVEC 205
Query: 185 IYQICLVLIECTLQVVKGAVIPYEP 209
I +I L LI + +KG PY+P
Sbjct: 206 I-KIILDLI--SESPIKGRAQPYDP 227
Score = 129 (50.5 bits), Expect = 8.5e-18, Sum P(3) = 8.5e-18
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 282 DTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQGCQ 340
D G + T++ + D+AG +IGK G R+ +IR SGA I I E S ++ I G Q
Sbjct: 382 DLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 441
Query: 341 EAVSLAQYLINMCIE 355
+ + AQYL+ ++
Sbjct: 442 DQIQNAQYLLQNSVK 456
Score = 118 (46.6 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 26/60 (43%), Positives = 38/60 (63%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIY 186
++ IP GS+IGKGG +IK IR SGA++++ + L S +RI+T+ G D I A Y
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITITGTQDQIQNAQY 449
Score = 92 (37.4 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 30/103 (29%), Positives = 53/103 (51%)
Query: 94 NVCTAYNFMCRSLEDYHINR--NRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRD 151
N T F R ED + R N + + ++L++++ + + G++IGKGG IK +R
Sbjct: 12 NTETNGEFGKRPAEDMEEEQAFKRSRN-TDEMVELRILLQSKNAGAVIGKGGKNIKALRT 70
Query: 152 LSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIE 194
A+V V P ERI+++ + +TI + + +I L E
Sbjct: 71 DYNASVSVPDSSGP---ERILSISADIETIGEILKKIIPTLEE 110
Score = 71 (30.1 bits), Expect = 8.5e-18, Sum P(3) = 8.5e-18
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 12 DTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
D ++ +R L S N + IG GG ++ LR + A +S+ D + P+RI
Sbjct: 40 DEMVELRILLQSK-NAGAV---IGKGGKNIKALRTDYNASVSVPDSSGPERI 87
Score = 47 (21.6 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 17 MRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACP---DRI 63
+R L H S+ +IG G ++ LR+ + I + CP DR+
Sbjct: 147 LRLLIHQSL----AGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRV 192
>UNIPROTKB|E2RA50 [details] [associations]
symbol:E2RA50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OMA:KALRTDX InterPro:IPR012987 Pfam:PF08067 EMBL:AAEX03000514
Ensembl:ENSCAFT00000002165 NextBio:20851993 Uniprot:E2RA50
Length = 439
Score = 129 (50.5 bits), Expect = 1.5e-16, Sum P(3) = 1.5e-16
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 282 DTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQGCQ 340
D G + T++ + D+AG +IGK G R+ +IR SGA I I E S ++ I G Q
Sbjct: 358 DLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 417
Query: 341 EAVSLAQYLINMCIE 355
+ + AQYL+ ++
Sbjct: 418 DQIQNAQYLLQNSVK 432
Score = 118 (46.6 bits), Expect = 1.5e-16, Sum P(3) = 1.5e-16
Identities = 32/105 (30%), Positives = 55/105 (52%)
Query: 105 SLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDML 164
+LE+Y + +C +L+L+I + G +IG G KIK + +++ +
Sbjct: 107 TLEEYQHYKGSDFDC-----ELRLLIHQSLAGGIIGVKGAKIKKFGGNTQTTIKLFQECC 161
Query: 165 PMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVVKGAVIPYEP 209
P ST+R+V + G PD + + I +I L LI + +KG PY+P
Sbjct: 162 PHSTDRVVLIGGKPDRVVECI-KIILDLI--SESPIKGRAQPYDP 203
Score = 118 (46.6 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 26/60 (43%), Positives = 38/60 (63%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIY 186
++ IP GS+IGKGG +IK IR SGA++++ + L S +RI+T+ G D I A Y
Sbjct: 367 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITITGTQDQIQNAQY 425
Score = 93 (37.8 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 33/112 (29%), Positives = 57/112 (50%)
Query: 94 NVCTAYNFMCRSLEDYHINR--NRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRD 151
N T F R ED + R N + + ++L++++ + + G++IGKGG IK +R
Sbjct: 12 NTETNGEFGKRPAEDMEEEQAFKRSRN-TDEMVELRILLQSKNAGAVIGKGGKNIKALRT 70
Query: 152 LSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVVKGA 203
A+V V P ERI+++ + +TI + + +I L E Q KG+
Sbjct: 71 DYNASVSVPDSSGP---ERILSISADIETIGEILKKIIPTLEE--YQHYKGS 117
Score = 71 (30.1 bits), Expect = 1.5e-16, Sum P(3) = 1.5e-16
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 12 DTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
D ++ +R L S N + IG GG ++ LR + A +S+ D + P+RI
Sbjct: 40 DEMVELRILLQSK-NAGAV---IGKGGKNIKALRTDYNASVSVPDSSGPERI 87
>UNIPROTKB|E2RJ54 [details] [associations]
symbol:E2RJ54 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 OMA:INPWANG EMBL:AAEX03026697
Ensembl:ENSCAFT00000027729 NextBio:20855871 Uniprot:E2RJ54
Length = 439
Score = 128 (50.1 bits), Expect = 2.0e-16, Sum P(3) = 2.0e-16
Identities = 32/105 (30%), Positives = 58/105 (55%)
Query: 105 SLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDML 164
+LE+Y + +C +L+L+I + G +IG G KIK++R+ + +++ +
Sbjct: 107 TLEEYQHYKGSDFDC-----ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECC 161
Query: 165 PMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVVKGAVIPYEP 209
P T+R+V + G PD + + I +I L LI + +KG PY+P
Sbjct: 162 PHPTDRVVLIGGKPDRVVECI-KIILDLI--SESPIKGRAQPYDP 203
Score = 123 (48.4 bits), Expect = 2.0e-16, Sum P(3) = 2.0e-16
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 282 DTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQGCQ 340
D G + T++ ++ D+AG +IGK G R+ ++R SGA I I E S ++ I G Q
Sbjct: 358 DLGGPIITTQVTISKDLAGSIIGKGGRRIKQVRHESGASIKIDEPLEGSEDRVITITGTQ 417
Query: 341 EAVSLAQYLINMCIE 355
+ + A YL+ ++
Sbjct: 418 DQIQNAPYLLQNSVK 432
Score = 108 (43.1 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 136 GSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIY 186
GS+IGKGG +IK +R SGA++++ + L S +R++T+ G D I A Y
Sbjct: 376 GSIIGKGGRRIKQVRHESGASIKI-DEPLEGSEDRVITITGTQDQIQNAPY 425
Score = 89 (36.4 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 36/145 (24%), Positives = 71/145 (48%)
Query: 115 RMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTV 174
R N + + ++L++++ + + G++IGKGG IK + A+V V P ERI+++
Sbjct: 35 RSRN-TDEMVELRILLQSKNAGAVIGKGGKNIKALHTDYNASVSVPDSSGP---ERILSI 90
Query: 175 HGNPDTISQAIYQICLVLIECTLQVVKGAVIPYEPKTMN----AGPVI-LSGGQAYTLHG 229
+ +TI + + +I L E Q KG+ E + + AG +I + G + L
Sbjct: 91 SADIETIGEILKKIIPTLEE--YQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRE 148
Query: 230 EYAVPVQEVAGKKQPHPLAGLAVLG 254
++ + + PHP + ++G
Sbjct: 149 NTQTTIK-LFQECCPHPTDRVVLIG 172
Score = 66 (28.3 bits), Expect = 2.0e-16, Sum P(3) = 2.0e-16
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 12 DTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
D ++ +R L S N + IG GG ++ L + A +S+ D + P+RI
Sbjct: 40 DEMVELRILLQSK-NAGAV---IGKGGKNIKALHTDYNASVSVPDSSGPERI 87
Score = 47 (21.6 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 17 MRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACP---DRI 63
+R L H S+ +IG G ++ LR+ + I + CP DR+
Sbjct: 123 LRLLIHQSL----AGGIIGVKGAKIKELRENTQTTIKLFQECCPHPTDRV 168
>UNIPROTKB|Q5T6W5 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
GO:GO:0030529 EMBL:AL354733 HOGENOM:HOG000019764 HOVERGEN:HBG051916
InterPro:IPR012987 Pfam:PF08067 UniGene:Hs.522257 HGNC:HGNC:5044
ChiTaRS:HNRNPK IPI:IPI00514561 SMR:Q5T6W5 MINT:MINT-1445469
Ensembl:ENST00000435158 Uniprot:Q5T6W5
Length = 428
Score = 133 (51.9 bits), Expect = 9.6e-16, Sum P(3) = 9.6e-16
Identities = 33/105 (31%), Positives = 59/105 (56%)
Query: 105 SLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDML 164
+LE+Y + +C +L+L+I + G +IG G KIK++R+ + +++ +
Sbjct: 96 TLEEYQHYKGSDFDC-----ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECC 150
Query: 165 PMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVVKGAVIPYEP 209
P ST+R+V + G PD + + I +I L LI + +KG PY+P
Sbjct: 151 PHSTDRVVLIGGKPDRVVECI-KIILDLI--SESPIKGRAQPYDP 192
Score = 129 (50.5 bits), Expect = 9.6e-16, Sum P(3) = 9.6e-16
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 282 DTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQGCQ 340
D G + T++ + D+AG +IGK G R+ +IR SGA I I E S ++ I G Q
Sbjct: 347 DLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 406
Query: 341 EAVSLAQYLINMCIE 355
+ + AQYL+ ++
Sbjct: 407 DQIQNAQYLLQNSVK 421
Score = 118 (46.6 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 26/60 (43%), Positives = 38/60 (63%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIY 186
++ IP GS+IGKGG +IK IR SGA++++ + L S +RI+T+ G D I A Y
Sbjct: 356 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITITGTQDQIQNAQY 414
Score = 47 (21.6 bits), Expect = 9.6e-16, Sum P(3) = 9.6e-16
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 41 VRRLRKESGAKISITDGACPDRI 63
++ LR + A +S+ D + P+RI
Sbjct: 54 IKALRTDYNASVSVPDSSGPERI 76
Score = 47 (21.6 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 17 MRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACP---DRI 63
+R L H S+ +IG G ++ LR+ + I + CP DR+
Sbjct: 112 LRLLIHQSL----AGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRV 157
Score = 44 (20.5 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 146 IKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVVKGA 203
IK +R A+V V P ERI+++ + +TI + + +I L E Q KG+
Sbjct: 54 IKALRTDYNASVSVPDSSGP---ERILSISADIETIGEILKKIIPTLEE--YQHYKGS 106
>UNIPROTKB|H3BSS4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 PRIDE:H3BSS4 Ensembl:ENST00000547859
Uniprot:H3BSS4
Length = 184
Score = 149 (57.5 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 32/76 (42%), Positives = 46/76 (60%)
Query: 278 SGGKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHI 336
S G D E+ + +D+ GC+IG+ G+++ EIRQ+SGAQI I E S + I
Sbjct: 97 SAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTI 156
Query: 337 QGCQEAVSLAQYLINM 352
G ++SLAQYLIN+
Sbjct: 157 TGSAASISLAQYLINV 172
Score = 115 (45.5 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 28/71 (39%), Positives = 43/71 (60%)
Query: 118 NCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGN 177
+ S Q +L IP G +IG+ G KI +IR +SGA +++A+ + ST+R VT+ G+
Sbjct: 101 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV-EGSTDRQVTITGS 159
Query: 178 PDTISQAIYQI 188
+IS A Y I
Sbjct: 160 AASISLAQYLI 170
Score = 66 (28.3 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 201 KGAVIPYEPKTMNAGPVILSGGQ 223
KG IPY PK ++ PVI +GGQ
Sbjct: 7 KGVTIPYRPKP-SSSPVIFAGGQ 28
Score = 51 (23.0 bits), Expect = 3.8e-13, Sum P(2) = 3.8e-13
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 203 AVIPYEPKTMNAGPVILSGG--QAYTLHGEYAVP 234
A P+ +M P L G +AYT+ G+YA+P
Sbjct: 38 ASFPHTTPSMCLNPD-LEGPPLEAYTIQGQYAIP 70
>FB|FBgn0015907 [details] [associations]
symbol:bl "bancal" species:7227 "Drosophila melanogaster"
[GO:0030529 "ribonucleoprotein complex" evidence=ISS] [GO:0003729
"mRNA binding" evidence=NAS;TAS] [GO:0005634 "nucleus"
evidence=IC;IDA;TAS] [GO:0035062 "omega speckle" evidence=IDA]
[GO:0000785 "chromatin" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=TAS]
[GO:0045165 "cell fate commitment" evidence=TAS] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0007446 "imaginal disc growth"
evidence=TAS] [GO:0008134 "transcription factor binding"
evidence=TAS] [GO:0035107 "appendage morphogenesis" evidence=TAS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005737
GO:GO:0008283 GO:GO:0003729 GO:GO:0000785 GO:GO:0030529
GO:GO:0008134 GO:GO:0045165 GO:GO:0000381 GO:GO:0007446 HSSP:P61978
GO:GO:0035062 FlyBase:FBgn0015907 ChiTaRS:bl GO:GO:0035107
EMBL:AF275629 ProteinModelPortal:Q7KHL0 SMR:Q7KHL0 STRING:Q7KHL0
PRIDE:Q7KHL0 InParanoid:Q7KHL0 ArrayExpress:Q7KHL0 Bgee:Q7KHL0
Uniprot:Q7KHL0
Length = 508
Score = 131 (51.2 bits), Expect = 3.0e-14, Sum P(3) = 3.0e-14
Identities = 31/89 (34%), Positives = 53/89 (59%)
Query: 122 QPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGAN-VQVASDMLPMSTERIVTVHGNPDT 180
+ ++L+I + G +IGKGG KIK+IRD G ++V S++ P ST+R+V G
Sbjct: 93 EDFDVRLLIHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAPQSTDRVVQTVGKQSQ 152
Query: 181 ISQAIYQICLVLIECTLQVVKGAVIPYEP 209
+ +A+ ++ + L T +KGA+ Y+P
Sbjct: 153 VIEAVREV-ITLTRDT--PIKGAIHNYDP 178
Score = 113 (44.8 bits), Expect = 9.8e-06, Sum P(2) = 9.8e-06
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIY 186
++ IP G++IGKGG +I+ IR+ S A + + + LP S +RI+T+ G P I A Y
Sbjct: 424 QVTIPKELAGAIIGKGGGRIRRIRNESSAYITI-DEPLPNSNDRIITISGTPKQIQMAQY 482
Score = 102 (41.0 bits), Expect = 3.0e-14, Sum P(3) = 3.0e-14
Identities = 21/66 (31%), Positives = 36/66 (54%)
Query: 290 TEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGT-ESHKKMFHIQGCQEAVSLAQY 348
T++ + ++AG +IGK G R+ IR S A I I S+ ++ I G + + +AQY
Sbjct: 423 TQVTIPKELAGAIIGKGGGRIRRIRNESSAYITIDEPLPNSNDRIITISGTPKQIQMAQY 482
Query: 349 LINMCI 354
L+ +
Sbjct: 483 LLQQSV 488
Score = 67 (28.6 bits), Expect = 9.9e-05, Sum P(2) = 9.9e-05
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERI 171
++++IP++ G++IGKGG I+ +R A V V P T +I
Sbjct: 25 VRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDSQGPERTIQI 70
Score = 65 (27.9 bits), Expect = 3.0e-14, Sum P(3) = 3.0e-14
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 2 DGNGDGKIDEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPD 61
+G D K + + T+R L SS+ +IG GG ++++R + A +S+ D P+
Sbjct: 10 EGPQDQKRNRRSEETVRILIPSSI----AGAVIGKGGQHIQKMRTQYKATVSVDDSQGPE 65
Query: 62 R 62
R
Sbjct: 66 R 66
>UNIPROTKB|C9JTY5 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00978070 ProteinModelPortal:C9JTY5 SMR:C9JTY5
STRING:C9JTY5 Ensembl:ENST00000466412 ArrayExpress:C9JTY5
Bgee:C9JTY5 Uniprot:C9JTY5
Length = 124
Score = 111 (44.1 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 1 MDGNGDGKIDEDTL---ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDG 57
M G+ G +E L +T+R L H E+ +IG G V+R+R++S A+I+I++G
Sbjct: 1 MSGSDGGLEEEPELSITLTLRMLMHGK----EVGSIIGKKGETVKRIREQSSARITISEG 56
Query: 58 ACPDRI 63
+CP+RI
Sbjct: 57 SCPERI 62
Score = 97 (39.2 bits), Expect = 0.00031, P = 0.00031
Identities = 30/109 (27%), Positives = 51/109 (46%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQ 183
L L++++ GS+IGK G +K IR+ S A + ++ P ERI T+ G+ +
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCP---ERITTITGSTAAVFH 74
Query: 184 AIYQICLVLIE--CTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGE 230
A+ I L E C G + P T+ +++ Q +L G+
Sbjct: 75 AVSMIAFKLDEDLCAAPA-NGGNVSRPPVTLR---LVIPASQCGSLIGK 119
Score = 95 (38.5 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 19/29 (65%), Positives = 22/29 (75%)
Query: 118 NCSPQPLQLKLVIPATHCGSLIGKGGCKI 146
N S P+ L+LVIPA+ CGSLIGK G KI
Sbjct: 96 NVSRPPVTLRLVIPASQCGSLIGKAGTKI 124
Score = 40 (19.1 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRL 310
V +V+ G +IGKAG+++
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKI 124
>UNIPROTKB|B3KM64 [details] [associations]
symbol:PCBP4 "cDNA FLJ10382 fis, clone NT2RM2002088, highly
similar to Poly(rC)-binding protein 4" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HOVERGEN:HBG053520 UniGene:Hs.20930 HGNC:HGNC:8652 EMBL:AK001244
IPI:IPI00788617 SMR:B3KM64 STRING:B3KM64 Ensembl:ENST00000395013
UCSC:uc003dci.2 Uniprot:B3KM64
Length = 243
Score = 182 (69.1 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 47/131 (35%), Positives = 70/131 (53%)
Query: 280 GKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQG 338
G D G E ++ +D+ GCVIG+ GS++ EIRQ+SGA I I E + ++ I G
Sbjct: 74 GLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITG 133
Query: 339 CQEAVSLAQYLINMCIELQKNNTTNTSDNPEPADLDAAISAFMTASVNSSLIEKPTPHPG 398
+++LAQYLI C+E K+ + T + PADL A S +TA + TP+
Sbjct: 134 SPVSIALAQYLITACLETAKSTSGGTPSSA-PADLPAPFSPPLTALPTAPPGLLGTPYAI 192
Query: 399 SMVTLGGLSEL 409
S+ GL +
Sbjct: 193 SLSNFIGLKPM 203
Score = 135 (52.6 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 42/108 (38%), Positives = 62/108 (57%)
Query: 118 NCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVT-VHG 176
N S P+ L+LVIPA+ CGSLIGK G KIK+IR+++ Q++S +P +T +V +
Sbjct: 19 NVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIREVTKLQ-QLSSHAVPFATPSVVPGLDP 77
Query: 177 NPDTISQAIYQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSGGQA 224
T SQ + + LI C + +G+ I E + M+ G I G QA
Sbjct: 78 GTQTSSQE-FLVPNDLIGCVIGR-QGSKIS-EIRQMS-GAHIKIGNQA 121
>UNIPROTKB|F8W1G6 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021049
Ensembl:ENST00000546652 ArrayExpress:F8W1G6 Bgee:F8W1G6
Uniprot:F8W1G6
Length = 202
Score = 126 (49.4 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 24/45 (53%), Positives = 31/45 (68%)
Query: 107 EDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRD 151
ED + S P+ L+LV+PA+ CGSLIGKGGCKIK+IR+
Sbjct: 78 EDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 122
Score = 105 (42.0 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 15 ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
+T+R L H E+ +IG G V+++R+ESGA+I+I++G CP+RI
Sbjct: 11 LTIRLLMHGK----EVGSIIGKKGESVKKMREESGARINISEGNCPERI 55
Score = 47 (21.6 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQ 315
V +V+ G +IGK G ++ EIR+
Sbjct: 95 VTLRLVVPASQCGSLIGKGGCKIKEIRE 122
>UNIPROTKB|J9P8J3 [details] [associations]
symbol:J9P8J3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 EMBL:AAEX03000514
Ensembl:ENSCAFT00000047704 Uniprot:J9P8J3
Length = 399
Score = 129 (50.5 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 282 DTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQGCQ 340
D G + T++ + D+AG +IGK G R+ +IR SGA I I E S ++ I G Q
Sbjct: 318 DLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 377
Query: 341 EAVSLAQYLINMCIE 355
+ + AQYL+ ++
Sbjct: 378 DQIQNAQYLLQNSVK 392
Score = 118 (46.6 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 26/60 (43%), Positives = 38/60 (63%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIY 186
++ IP GS+IGKGG +IK IR SGA++++ + L S +RI+T+ G D I A Y
Sbjct: 327 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITITGTQDQIQNAQY 385
Score = 90 (36.7 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 24/80 (30%), Positives = 46/80 (57%)
Query: 115 RMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTV 174
R N + + ++L++++ + + G++IGKGG IK +R A+V V P ERI+++
Sbjct: 9 RSRN-TDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGP---ERILSI 64
Query: 175 HGNPDTISQAIYQICLVLIE 194
+ +TI + + +I L E
Sbjct: 65 SADIETIGEILKKIIPTLEE 84
Score = 78 (32.5 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 157 VQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVVKGAVIPYEP 209
+++ + P ST+R+V + G PD + + I +I L LI + +KG PY+P
Sbjct: 114 IKLFQECCPHSTDRVVLIGGKPDRVVECI-KIILDLI--SESPIKGRAQPYDP 163
Score = 71 (30.1 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 12 DTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
D ++ +R L S N + IG GG ++ LR + A +S+ D + P+RI
Sbjct: 14 DEMVELRILLQSK-NAGAV---IGKGGKNIKALRTDYNASVSVPDSSGPERI 61
>TAIR|locus:2831364 [details] [associations]
symbol:AT4G18375 "AT4G18375" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003723 EMBL:AL161548 EMBL:AL021710
KO:K13162 EMBL:AY133701 EMBL:BT001108 IPI:IPI00539414
IPI:IPI00548636 RefSeq:NP_193572.1 RefSeq:NP_849406.1
UniGene:At.32914 ProteinModelPortal:P58223 SMR:P58223
MEROPS:S01.441 PaxDb:P58223 EnsemblPlants:AT4G18375.2 GeneID:827566
KEGG:ath:AT4G18375 GeneFarm:2264 TAIR:At4g18375 eggNOG:NOG297635
HOGENOM:HOG000084632 InParanoid:P58223 OMA:ANICISK PhylomeDB:P58223
ProtClustDB:CLSN2686050 Genevestigator:P58223 GermOnline:AT4G18375
Uniprot:P58223
Length = 606
Score = 146 (56.5 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 74/335 (22%), Positives = 133/335 (39%)
Query: 8 KIDEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDG--ACPDRIXX 65
KI+ D L+ R L ++ + +IG G ++ +R + AKI + D C R+
Sbjct: 29 KINRDELVVYRIL----CPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVIT 84
Query: 66 XXXXXXXXXXXXXXXGYPGHTLWVTSVDNVCTAYNFMCRSLEDYHINRN--RMENCSPQP 123
L D + Y+ + S E+ + N R +N
Sbjct: 85 IYCSVKEKQEEIGFTKSENEPLCCAQ-DALLKVYDAIVASDEENNTKTNVDRDDN----- 138
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASD-------MLPMSTERIVTVHG 176
+ +L++P + SLIGK G IK IR + A+V+V S + M + +V + G
Sbjct: 139 KECRLLVPFSQSSSLIGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISG 198
Query: 177 NPDTISQAIYQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSG---GQAYTLHGEYAV 233
P+++ QA++ + ++ + + + + + + A VI+ Y G Y+
Sbjct: 199 EPESVKQALFAVSAIMYKINPR--ENIPLDSTSQDVPAASVIVPSDLSNSVYPQTGFYSN 256
Query: 234 P---VQEVAGKKQPHPLAGLAVLGIEGIXXXXXXXXXXXXXXXXRVKS-GGKDTGDDFVE 289
+Q+ AG P L+V +G GG ++ V
Sbjct: 257 QDHILQQGAGV--PSYFNALSVSDFQGYAETAANPVPVFASSLPVTHGFGGSSRSEELVF 314
Query: 290 TEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIH 324
+ +I VIGK GS + IR+ SG+ I ++
Sbjct: 315 KVLCPLCNIMR-VIGKGGSTIKRIREASGSCIEVN 348
Score = 97 (39.2 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 39/150 (26%), Positives = 72/150 (48%)
Query: 282 DTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTESHKKMFHIQGCQE 341
D + V+ +++++ + GCVIGK+GS + EIR+ + A I I G + + + G E
Sbjct: 389 DEDAENVKMQLLVSSKVIGCVIGKSGSVINEIRKRTNANICISKGKKDD--LVEVSG--E 444
Query: 342 AVSLAQYLINMCIELQKN---NTTNTSDNPEPADLDAAISAFMTASVNSSLIEKPTPHPG 398
S+ LI + + L+++ + + + PA D +F++ S N+ P+
Sbjct: 445 VSSVRDALIQIVLRLREDVLGDKDSVATRKPPARTDNC--SFLSGSSNAGYT-LPS-FMS 500
Query: 399 SMVTLGGLSELLANIAASNVKSTVQTTGAY 428
SM + G + A NV + +TG Y
Sbjct: 501 SMASTSGFHGYGSFPAGDNV---LGSTGPY 527
Score = 92 (37.4 bits), Expect = 3.0e-06, Sum P(3) = 3.0e-06
Identities = 36/124 (29%), Positives = 58/124 (46%)
Query: 106 LEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLP 165
L++Y IN EN ++++L++ + G +IGK G I +IR + AN+ ++
Sbjct: 383 LQEY-INDEDAEN-----VKMQLLVSSKVIGCVIGKSGSVINEIRKRTNANICISKG--- 433
Query: 166 MSTERIVTVHGNPDTISQAIYQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSGGQ-- 223
+ +V V G ++ A+ QI L L E L K +V +P LSG
Sbjct: 434 -KKDDLVEVSGEVSSVRDALIQIVLRLREDVLGD-KDSVATRKPPARTDNCSFLSGSSNA 491
Query: 224 AYTL 227
YTL
Sbjct: 492 GYTL 495
Score = 75 (31.5 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 21/61 (34%), Positives = 30/61 (49%)
Query: 291 EIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTESH-KKMFHIQGCQEAVSLAQYL 349
EI++ V+GK G L IR+ISGA I I SH + + G E + A+ L
Sbjct: 539 EILIPAHAMSKVMGKGGGNLENIRRISGAMIEISASKTSHGDHIALLSGTLEQMRCAENL 598
Query: 350 I 350
+
Sbjct: 599 V 599
Score = 59 (25.8 bits), Expect = 3.0e-06, Sum P(3) = 3.0e-06
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 33 LIGPGGCIVRRLRKESGAKISITDGA--CPD 61
+IG GG ++R+R+ SG+ I + D C D
Sbjct: 326 VIGKGGSTIKRIREASGSCIEVNDSRTKCGD 356
>CGD|CAL0001510 [details] [associations]
symbol:PBP2 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0010834 "telomere maintenance via
telomere shortening" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 CGD:CAL0001510 GO:GO:0003723
EMBL:AACQ01000046 EMBL:AACQ01000047 eggNOG:NOG315872
RefSeq:XP_718039.1 RefSeq:XP_718106.1 ProteinModelPortal:Q5A8H8
STRING:Q5A8H8 GeneID:3640267 GeneID:3640340 KEGG:cal:CaO19.13193
KEGG:cal:CaO19.5771 HOGENOM:HOG000247928 Uniprot:Q5A8H8
Length = 529
Score = 163 (62.4 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 48/157 (30%), Positives = 74/157 (47%)
Query: 81 GYPGHTLWVTS-VDNVCTAYNFMCRS-LEDYHINRNRMENCSPQPLQLKLVIPATHCGSL 138
G P + V +NV A+ + R LE+ + + + Q LKL+IP G +
Sbjct: 201 GVPERIVAVKGPAENVARAFGLITRVILEE---PEDEPASINSQQYNLKLLIPHPMIGFI 257
Query: 139 IGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQ 198
IGK G K ++I + S A ++ A + LP ST+R+++V G D I A+Y I V++E
Sbjct: 258 IGKQGLKFREIEENSAAKLKAAENALPYSTDRVLSVMGVGDAIHIAVYYIAQVMLEHKEV 317
Query: 199 VVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPV 235
+ K V+ Y P L G Q Y P+
Sbjct: 318 LKKHKVVLYNPANYQPTDQSLGGRQRQPPSNSYNNPM 354
Score = 59 (25.8 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 24/91 (26%), Positives = 37/91 (40%)
Query: 284 GDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGA---QINIHTGTE----SHKKMFHI 336
G D ++ + + G VIGK G+ + IR+ S +I G K M +I
Sbjct: 438 GQDKYNQDVFVANSSIGSVIGKRGNNIKHIRETSACTYVKIEPDKGQSMMLGGGKGMTNI 497
Query: 337 Q-----GCQEAVSLAQYLINMCIELQKNNTT 362
+ G ++ A YLIN I + T
Sbjct: 498 RKLTLTGTLNSIQTAIYLINQRINADRERNT 528
Score = 55 (24.4 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 10 DEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDG--ACPDRI 63
D+ T I +R V E S ++G G + LR+++ +I++++ P+RI
Sbjct: 155 DDPTFIQLRMY----CPVKEASTIVGRKGETINHLREKANVRITVSENLKGVPERI 206
>CGD|CAL0000592 [details] [associations]
symbol:orf19.5627 species:5476 "Candida albicans" [GO:0000784
"nuclear chromosome, telomeric region" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0043409 "negative regulation of MAPK cascade" evidence=IEA]
[GO:0006469 "negative regulation of protein kinase activity"
evidence=IEA] [GO:0008298 "intracellular mRNA localization"
evidence=IEA] [GO:0007004 "telomere maintenance via telomerase"
evidence=IEA] [GO:0048255 "mRNA stabilization" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 CGD:CAL0000592 GO:GO:0003723 EMBL:AACQ01000034
eggNOG:NOG315872 RefSeq:XP_719187.1 ProteinModelPortal:Q5ABS3
GeneID:3639231 KEGG:cal:CaO19.5627 Uniprot:Q5ABS3
Length = 368
Score = 124 (48.7 bits), Expect = 6.2e-12, Sum P(2) = 6.2e-12
Identities = 51/203 (25%), Positives = 83/203 (40%)
Query: 8 KIDEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRIXXXX 67
K + D LI R L V+ E CLIG G ++ +R E+ K I+ P
Sbjct: 63 KSNIDALINYRVL----VSAKEAGCLIGTNGQVIDSIRNETNTKAGISR-LIPGSHERIL 117
Query: 68 XXXXXXXXXXXXXGYPGHTLWVTSVDNVCTAYNFMCRSLEDYHINRNRMENCSPQPLQLK 127
Y L ++++ YN+ L+ N E L+
Sbjct: 118 TVSGKLDDCAKALSYFAQALINANIES----YNYF--PLKQLSSTPNTEETTI-----LR 166
Query: 128 LVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQ 187
L+IP + G+LIG G +I+ +++ ++ + LP S ER+V + G D + ++
Sbjct: 167 LLIPNSQMGTLIGSKGARIQQLQNNFNISMIASKSFLPGSNERLVELQGTVDDLYDSLRI 226
Query: 188 ICLVLIECTLQVVKGAVIPYEPK 210
I LIE +V G Y P+
Sbjct: 227 ISRCLIEDFSSIV-GTTY-YVPR 247
Score = 109 (43.4 bits), Expect = 6.2e-12, Sum P(2) = 6.2e-12
Identities = 30/87 (34%), Positives = 45/87 (51%)
Query: 278 SGGKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTES-HKKMFHI 336
SGG T D I +DI G +IGK GSR+ +R++SGA I I E ++++F I
Sbjct: 282 SGGNKTTDT-----ISFPNDIVGALIGKRGSRIDGVRKVSGAMIAISEAIEGENERVFTI 336
Query: 337 QGCQEAVSLAQYLINMCIELQKNNTTN 363
G AV A+ +I + ++ N
Sbjct: 337 TGSSHAVDKAKQMIYQNFKREEERRKN 363
>UNIPROTKB|F1LMZ7 [details] [associations]
symbol:Nova1 "RNA-binding protein Nova-1" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0003723 IPI:IPI00331877
Ensembl:ENSRNOT00000044527 ArrayExpress:F1LMZ7 Uniprot:F1LMZ7
Length = 474
Score = 123 (48.4 bits), Expect = 2.5e-11, Sum P(3) = 2.5e-11
Identities = 56/188 (29%), Positives = 82/188 (43%)
Query: 82 YPGHTLWVTSVDNVCTAYN----FMCRSLEDYHINRNRMENCS---PQPL-------QLK 127
YPG T V + A N F+ + + N + E S PQ Q+K
Sbjct: 91 YPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRIKQVK 150
Query: 128 LVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS--DMLPMSTERIVTVHGNPDTISQAI 185
+++P + G +IGKGG +K I + SGA VQ++ D + + ER+VTV G P+ +A+
Sbjct: 151 IIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQ-ERVVTVSGEPEQNRKAV 209
Query: 186 YQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSG--GQAYTLHGEYAVPVQEVAGKKQ 243
++ + I+ Q I Y T GPV S G Y E AG
Sbjct: 210 -ELIIQKIQEDPQSGSCLNISYANVT---GPVANSNPTGSPYANTAEVLPTAAAAAGLLG 265
Query: 244 PHPLAGLA 251
LAG+A
Sbjct: 266 HANLAGVA 273
Score = 98 (39.6 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 20/59 (33%), Positives = 37/59 (62%)
Query: 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS--DMLPMSTERIVTVHGNPDTIS 182
LK++IP+ GS+IGKGG I ++ +GA ++++ D P +TER+ + G + ++
Sbjct: 51 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALN 109
Score = 94 (38.1 bits), Expect = 2.5e-11, Sum P(3) = 2.5e-11
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 282 DTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE----SHKKMFHIQ 337
D D VE I + +++ G ++GK G L+E ++++GA+I I E + + I
Sbjct: 393 DGSKDVVE--IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTIT 450
Query: 338 GCQEAVSLAQYLINMCIELQK 358
G A AQYLI I ++
Sbjct: 451 GTPAATQAAQYLITQRITYEQ 471
Score = 63 (27.2 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 29/121 (23%), Positives = 51/121 (42%)
Query: 285 DDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHT---GTESHKKMFHIQGCQE 341
D + +I++ + AG +IGK G+ + I + SGA + + G +++ + G E
Sbjct: 144 DRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPE 203
Query: 342 ----AVSLAQYLIN------MCIELQKNNTTNTSDNPEPADLDAAISAFM--TASVNSSL 389
AV L I C+ + N T N P A +A + TA+ + L
Sbjct: 204 QNRKAVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPYANTAEVLPTAAAAAGL 263
Query: 390 I 390
+
Sbjct: 264 L 264
Score = 52 (23.4 bits), Expect = 2.5e-11, Sum P(3) = 2.5e-11
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 33 LIGPGGCIVRRLRKESGAKISIT 55
+IG GG + +L+KE+GA I ++
Sbjct: 63 IIGKGGQTIVQLQKETGATIKLS 85
>UNIPROTKB|D3DS81 [details] [associations]
symbol:NOVA1 "Neuro-oncological ventral antigen 1, isoform
CRA_a" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 EMBL:CH471078
RefSeq:NP_006480.2 UniGene:Hs.31588 GeneID:4857 KEGG:hsa:4857
CTD:4857 HGNC:HGNC:7886 HOGENOM:HOG000007833 KO:K14944
ChiTaRS:NOVA1 GenomeRNAi:4857 NextBio:18710 EMBL:AL079343
EMBL:AL132716 IPI:IPI00956017 SMR:D3DS81 Ensembl:ENST00000465357
UCSC:uc001wpz.3 Uniprot:D3DS81
Length = 483
Score = 122 (48.0 bits), Expect = 3.5e-11, Sum P(3) = 3.5e-11
Identities = 55/188 (29%), Positives = 82/188 (43%)
Query: 82 YPGHTLWVTSVDNVCTAYN----FMCRSLEDYHINRNRMENCS---PQPL-------QLK 127
YPG T V + A N F+ + + N + E S PQ Q+K
Sbjct: 92 YPGTTERVCLIQGTVEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRIKQVK 151
Query: 128 LVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS--DMLPMSTERIVTVHGNPDTISQAI 185
+++P + G +IGKGG +K + + SGA VQ++ D + + ER+VTV G P+ +A+
Sbjct: 152 IIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQ-ERVVTVSGEPEQNRKAV 210
Query: 186 YQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSG--GQAYTLHGEYAVPVQEVAGKKQ 243
++ + I+ Q I Y T GPV S G Y E AG
Sbjct: 211 -ELIIQKIQEDPQSGSCLNISYANVT---GPVANSNPTGSPYANTAEVLPTAAAAAGLLG 266
Query: 244 PHPLAGLA 251
LAG+A
Sbjct: 267 HANLAGVA 274
Score = 99 (39.9 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 20/59 (33%), Positives = 37/59 (62%)
Query: 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS--DMLPMSTERIVTVHGNPDTIS 182
LK++IP+ GS+IGKGG I ++ +GA ++++ D P +TER+ + G + ++
Sbjct: 52 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALN 110
Score = 94 (38.1 bits), Expect = 3.5e-11, Sum P(3) = 3.5e-11
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 282 DTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE----SHKKMFHIQ 337
D D VE I + +++ G ++GK G L+E ++++GA+I I E + + I
Sbjct: 394 DGSKDVVE--IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTIT 451
Query: 338 GCQEAVSLAQYLINMCIELQK 358
G A AQYLI I ++
Sbjct: 452 GTPAATQAAQYLITQRITYEQ 472
Score = 62 (26.9 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 28/121 (23%), Positives = 51/121 (42%)
Query: 285 DDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHT---GTESHKKMFHIQGCQE 341
D + +I++ + AG +IGK G+ + + + SGA + + G +++ + G E
Sbjct: 145 DRIKQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGEPE 204
Query: 342 ----AVSLAQYLIN------MCIELQKNNTTNTSDNPEPADLDAAISAFM--TASVNSSL 389
AV L I C+ + N T N P A +A + TA+ + L
Sbjct: 205 QNRKAVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPYANTAEVLPTAAAAAGL 264
Query: 390 I 390
+
Sbjct: 265 L 265
Score = 52 (23.4 bits), Expect = 3.5e-11, Sum P(3) = 3.5e-11
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 33 LIGPGGCIVRRLRKESGAKISIT 55
+IG GG + +L+KE+GA I ++
Sbjct: 64 IIGKGGQTIVQLQKETGATIKLS 86
>UNIPROTKB|F1LXN9 [details] [associations]
symbol:F1LXN9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 IPI:IPI00777906
Ensembl:ENSRNOT00000017403 Uniprot:F1LXN9
Length = 376
Score = 117 (46.2 bits), Expect = 4.1e-11, Sum P(3) = 4.1e-11
Identities = 27/85 (31%), Positives = 47/85 (55%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQA 184
+L L+I + G +IG G K+K++R+ + V+ + P ST+R+V + G PD + +
Sbjct: 93 ELGLLIQQSLAGGIIGVKGAKVKELRENTQTTVKRFQEWCPHSTDRVVLIGGKPDRVVEC 152
Query: 185 IYQICLVLIECTLQVVKGAVIPYEP 209
I I ++ E +KG PY+P
Sbjct: 153 IKIIPDLVSESP---IKGRAQPYDP 174
Score = 101 (40.6 bits), Expect = 4.1e-11, Sum P(3) = 4.1e-11
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 279 GGKDTGDDF----VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTESHKKMF 334
GG+ + D + T+I + D+ G +IG+ G R+ +I SGA I S ++
Sbjct: 286 GGRGSYSDLDRHIITTQITIPKDLTGSIIGEGGQRIKQICHESGASIKTDELEGSEDRII 345
Query: 335 HIQGCQEAVSLAQYLINMCIE 355
I G Q+ + AQYL+ ++
Sbjct: 346 IITGTQDQIQNAQYLLQNSVK 366
Score = 64 (27.6 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 21/84 (25%), Positives = 43/84 (51%)
Query: 112 NRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERI 171
N R N + + ++ ++++ + + G++IGK IK +R A++ V P E I
Sbjct: 6 NFKRSRN-TDEMVESRILLQSENAGAVIGKN---IKALRTDYSASISVPDSSGP---EHI 58
Query: 172 VTVHGNPDTISQAIYQICLVLIEC 195
+++ + TI + + +I L EC
Sbjct: 59 LSIGADIKTIGEILRKIVPTLEEC 82
Score = 45 (20.9 bits), Expect = 4.1e-11, Sum P(3) = 4.1e-11
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 12 DTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
D ++ R L S N + IG ++ LR + A IS+ D + P+ I
Sbjct: 14 DEMVESRILLQSE-NAGAV---IGKN---IKALRTDYSASISVPDSSGPEHI 58
>RGD|621345 [details] [associations]
symbol:Nova1 "neuro-oncological ventral antigen 1" species:10116
"Rattus norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0005634 GO:GO:0007399 GO:GO:0003723
eggNOG:NOG258094 HOGENOM:HOG000007833 HOVERGEN:HBG082048
EMBL:AY262017 IPI:IPI00331877 UniGene:Rn.232418
ProteinModelPortal:Q80WA4 SMR:Q80WA4 PRIDE:Q80WA4 UCSC:RGD:621345
ArrayExpress:Q80WA4 Genevestigator:Q80WA4 Uniprot:Q80WA4
Length = 474
Score = 120 (47.3 bits), Expect = 5.5e-11, Sum P(3) = 5.5e-11
Identities = 56/188 (29%), Positives = 82/188 (43%)
Query: 82 YPGHTLWVTSVDNVCTAYN----FMCRSLEDYHINRNRMENCS---PQPL-------QLK 127
YPG T V + A N F+ + + N + E S PQ Q+K
Sbjct: 91 YPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRIKQVK 150
Query: 128 LVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS--DMLPMSTERIVTVHGNPDTISQAI 185
+++P + G +IGKGG +K I + SGA VQ++ D + + ER+VTV G P+ +A+
Sbjct: 151 IIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQ-ERVVTVSGEPEQNRKAV 209
Query: 186 YQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSG--GQAYTLHGEYAVPVQEVAGKKQ 243
++ + I+ Q I Y T GPV S G Y E AG
Sbjct: 210 -ELIIQKIQEDPQSGSCLNISYANVT---GPVANSNPTGFPYANTAEVLPTAAAAAGLLG 265
Query: 244 PHPLAGLA 251
LAG+A
Sbjct: 266 HANLAGVA 273
Score = 98 (39.6 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 20/59 (33%), Positives = 37/59 (62%)
Query: 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS--DMLPMSTERIVTVHGNPDTIS 182
LK++IP+ GS+IGKGG I ++ +GA ++++ D P +TER+ + G + ++
Sbjct: 51 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALN 109
Score = 94 (38.1 bits), Expect = 5.5e-11, Sum P(3) = 5.5e-11
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 282 DTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE----SHKKMFHIQ 337
D D VE I + +++ G ++GK G L+E ++++GA+I I E + + I
Sbjct: 393 DGSKDVVE--IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTIT 450
Query: 338 GCQEAVSLAQYLINMCIELQK 358
G A AQYLI I ++
Sbjct: 451 GTPAATQAAQYLITQRITYEQ 471
Score = 65 (27.9 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 29/121 (23%), Positives = 51/121 (42%)
Query: 285 DDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHT---GTESHKKMFHIQGCQE 341
D + +I++ + AG +IGK G+ + I + SGA + + G +++ + G E
Sbjct: 144 DRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPE 203
Query: 342 ----AVSLAQYLIN------MCIELQKNNTTNTSDNPEPADLDAAISAFM--TASVNSSL 389
AV L I C+ + N T N P A +A + TA+ + L
Sbjct: 204 QNRKAVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGFPYANTAEVLPTAAAAAGL 263
Query: 390 I 390
+
Sbjct: 264 L 264
Score = 52 (23.4 bits), Expect = 5.5e-11, Sum P(3) = 5.5e-11
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 33 LIGPGGCIVRRLRKESGAKISIT 55
+IG GG + +L+KE+GA I ++
Sbjct: 63 IIGKGGQTIVQLQKETGATIKLS 85
>UNIPROTKB|G3X7R5 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048
OMA:FRQNNTA EMBL:DAAA02052552 EMBL:DAAA02052553
Ensembl:ENSBTAT00000044049 Uniprot:G3X7R5
Length = 507
Score = 121 (47.7 bits), Expect = 5.5e-11, Sum P(3) = 5.5e-11
Identities = 43/131 (32%), Positives = 64/131 (48%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS--DMLPMSTERIVTVHGNPDTIS 182
Q+K+++P + G +IGKGG +K I + SGA VQ++ D + + ER+VTV G P+
Sbjct: 173 QVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQ-ERVVTVSGEPEQNR 231
Query: 183 QAIYQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSG--GQAYTLHGEYAVPVQEVAG 240
+A+ ++ + I+ Q I Y T GPV S G Y E AG
Sbjct: 232 KAV-ELIIQKIQEDPQSGSCLNISYANVT---GPVANSNPTGSPYANTAEVLPTAAAAAG 287
Query: 241 KKQPHPLAGLA 251
LAG+A
Sbjct: 288 LLGHANLAGVA 298
Score = 99 (39.9 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 20/59 (33%), Positives = 37/59 (62%)
Query: 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS--DMLPMSTERIVTVHGNPDTIS 182
LK++IP+ GS+IGKGG I ++ +GA ++++ D P +TER+ + G + ++
Sbjct: 52 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALN 110
Score = 94 (38.1 bits), Expect = 5.5e-11, Sum P(3) = 5.5e-11
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 282 DTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE----SHKKMFHIQ 337
D D VE I + +++ G ++GK G L+E ++++GA+I I E + + I
Sbjct: 418 DGSKDVVE--IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTIT 475
Query: 338 GCQEAVSLAQYLINMCIELQK 358
G A AQYLI I ++
Sbjct: 476 GTPAATQAAQYLITQRITYEQ 496
Score = 61 (26.5 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 28/117 (23%), Positives = 50/117 (42%)
Query: 289 ETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHT---GTESHKKMFHIQGCQE---- 341
+ +I++ + AG +IGK G+ + I + SGA + + G +++ + G E
Sbjct: 173 QVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRK 232
Query: 342 AVSLAQYLIN------MCIELQKNNTTNTSDNPEPADLDAAISAFM--TASVNSSLI 390
AV L I C+ + N T N P A +A + TA+ + L+
Sbjct: 233 AVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPYANTAEVLPTAAAAAGLL 289
Score = 52 (23.4 bits), Expect = 5.5e-11, Sum P(3) = 5.5e-11
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 33 LIGPGGCIVRRLRKESGAKISIT 55
+IG GG + +L+KE+GA I ++
Sbjct: 64 IIGKGGQTIVQLQKETGATIKLS 86
>UNIPROTKB|J9NXS6 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00650000093048 CTD:4857
KO:K14944 OMA:FRQNNTA EMBL:AAEX03005630 EMBL:AAEX03005631
RefSeq:XP_547754.1 Ensembl:ENSCAFT00000044255 GeneID:490632
KEGG:cfa:490632 Uniprot:J9NXS6
Length = 507
Score = 121 (47.7 bits), Expect = 5.5e-11, Sum P(3) = 5.5e-11
Identities = 43/131 (32%), Positives = 64/131 (48%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS--DMLPMSTERIVTVHGNPDTIS 182
Q+K+++P + G +IGKGG +K I + SGA VQ++ D + + ER+VTV G P+
Sbjct: 173 QVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQ-ERVVTVSGEPEQNR 231
Query: 183 QAIYQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSG--GQAYTLHGEYAVPVQEVAG 240
+A+ ++ + I+ Q I Y T GPV S G Y E AG
Sbjct: 232 KAV-ELIIQKIQEDPQSGSCLNISYANVT---GPVANSNPTGSPYANTAEVLPTAAAAAG 287
Query: 241 KKQPHPLAGLA 251
LAG+A
Sbjct: 288 LLGHANLAGVA 298
Score = 99 (39.9 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 20/59 (33%), Positives = 37/59 (62%)
Query: 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS--DMLPMSTERIVTVHGNPDTIS 182
LK++IP+ GS+IGKGG I ++ +GA ++++ D P +TER+ + G + ++
Sbjct: 52 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALN 110
Score = 94 (38.1 bits), Expect = 5.5e-11, Sum P(3) = 5.5e-11
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 282 DTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE----SHKKMFHIQ 337
D D VE I + +++ G ++GK G L+E ++++GA+I I E + + I
Sbjct: 418 DGSKDVVE--IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTIT 475
Query: 338 GCQEAVSLAQYLINMCIELQK 358
G A AQYLI I ++
Sbjct: 476 GTPAATQAAQYLITQRITYEQ 496
Score = 61 (26.5 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 28/117 (23%), Positives = 50/117 (42%)
Query: 289 ETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHT---GTESHKKMFHIQGCQE---- 341
+ +I++ + AG +IGK G+ + I + SGA + + G +++ + G E
Sbjct: 173 QVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRK 232
Query: 342 AVSLAQYLIN------MCIELQKNNTTNTSDNPEPADLDAAISAFM--TASVNSSLI 390
AV L I C+ + N T N P A +A + TA+ + L+
Sbjct: 233 AVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPYANTAEVLPTAAAAAGLL 289
Score = 52 (23.4 bits), Expect = 5.5e-11, Sum P(3) = 5.5e-11
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 33 LIGPGGCIVRRLRKESGAKISIT 55
+IG GG + +L+KE+GA I ++
Sbjct: 64 IIGKGGQTIVQLQKETGATIKLS 86
>MGI|MGI:104297 [details] [associations]
symbol:Nova1 "neuro-oncological ventral antigen 1"
species:10090 "Mus musculus" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IC]
[GO:0007399 "nervous system development" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:104297 GO:GO:0005634 GO:GO:0003729
GO:GO:0000398 GeneTree:ENSGT00650000093048 CTD:4857
eggNOG:NOG258094 HOGENOM:HOG000007833 HOVERGEN:HBG082048 KO:K14944
OMA:FRQNNTA ChiTaRS:NOVA1 EMBL:AC108802 EMBL:AC156636 EMBL:AF232828
EMBL:AK047565 IPI:IPI00659424 RefSeq:NP_067336.1 UniGene:Mm.247195
ProteinModelPortal:Q9JKN6 SMR:Q9JKN6 PhosphoSite:Q9JKN6
PaxDb:Q9JKN6 PRIDE:Q9JKN6 Ensembl:ENSMUST00000021438 GeneID:664883
KEGG:mmu:664883 UCSC:uc007nmd.2 InParanoid:Q9JKN6 NextBio:426120
Bgee:Q9JKN6 CleanEx:MM_NOVA1 Genevestigator:Q9JKN6
GermOnline:ENSMUSG00000021047 Uniprot:Q9JKN6
Length = 507
Score = 121 (47.7 bits), Expect = 5.5e-11, Sum P(3) = 5.5e-11
Identities = 43/131 (32%), Positives = 64/131 (48%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS--DMLPMSTERIVTVHGNPDTIS 182
Q+K+++P + G +IGKGG +K I + SGA VQ++ D + + ER+VTV G P+
Sbjct: 173 QVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQ-ERVVTVSGEPEQNR 231
Query: 183 QAIYQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSG--GQAYTLHGEYAVPVQEVAG 240
+A+ ++ + I+ Q I Y T GPV S G Y E AG
Sbjct: 232 KAV-ELIIQKIQEDPQSGSCLNISYANVT---GPVANSNPTGSPYANTAEVLPTAAAAAG 287
Query: 241 KKQPHPLAGLA 251
LAG+A
Sbjct: 288 LLGHANLAGVA 298
Score = 98 (39.6 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 20/59 (33%), Positives = 37/59 (62%)
Query: 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS--DMLPMSTERIVTVHGNPDTIS 182
LK++IP+ GS+IGKGG I ++ +GA ++++ D P +TER+ + G + ++
Sbjct: 52 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALN 110
Score = 94 (38.1 bits), Expect = 5.5e-11, Sum P(3) = 5.5e-11
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 282 DTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE----SHKKMFHIQ 337
D D VE I + +++ G ++GK G L+E ++++GA+I I E + + I
Sbjct: 418 DGSKDVVE--IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTIT 475
Query: 338 GCQEAVSLAQYLINMCIELQK 358
G A AQYLI I ++
Sbjct: 476 GTPAATQAAQYLITQRITYEQ 496
Score = 52 (23.4 bits), Expect = 5.5e-11, Sum P(3) = 5.5e-11
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 33 LIGPGGCIVRRLRKESGAKISIT 55
+IG GG + +L+KE+GA I ++
Sbjct: 64 IIGKGGQTIVQLQKETGATIKLS 86
>UNIPROTKB|D4AAF8 [details] [associations]
symbol:Nova1 "RNA-binding protein Nova-1" species:10116
"Rattus norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0003729 GO:GO:0000398 EMBL:CH473947
GeneTree:ENSGT00650000093048 CTD:4857 KO:K14944 UniGene:Rn.232418
IPI:IPI00556974 RefSeq:XP_001075031.1 RefSeq:XP_234098.2 SMR:D4AAF8
Ensembl:ENSRNOT00000050372 GeneID:298992 KEGG:rno:298992
NextBio:644625 Uniprot:D4AAF8
Length = 507
Score = 121 (47.7 bits), Expect = 5.5e-11, Sum P(3) = 5.5e-11
Identities = 43/131 (32%), Positives = 64/131 (48%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS--DMLPMSTERIVTVHGNPDTIS 182
Q+K+++P + G +IGKGG +K I + SGA VQ++ D + + ER+VTV G P+
Sbjct: 173 QVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQ-ERVVTVSGEPEQNR 231
Query: 183 QAIYQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSG--GQAYTLHGEYAVPVQEVAG 240
+A+ ++ + I+ Q I Y T GPV S G Y E AG
Sbjct: 232 KAV-ELIIQKIQEDPQSGSCLNISYANVT---GPVANSNPTGSPYANTAEVLPTAAAAAG 287
Query: 241 KKQPHPLAGLA 251
LAG+A
Sbjct: 288 LLGHANLAGVA 298
Score = 98 (39.6 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 20/59 (33%), Positives = 37/59 (62%)
Query: 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS--DMLPMSTERIVTVHGNPDTIS 182
LK++IP+ GS+IGKGG I ++ +GA ++++ D P +TER+ + G + ++
Sbjct: 52 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALN 110
Score = 94 (38.1 bits), Expect = 5.5e-11, Sum P(3) = 5.5e-11
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 282 DTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE----SHKKMFHIQ 337
D D VE I + +++ G ++GK G L+E ++++GA+I I E + + I
Sbjct: 418 DGSKDVVE--IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTIT 475
Query: 338 GCQEAVSLAQYLINMCIELQK 358
G A AQYLI I ++
Sbjct: 476 GTPAATQAAQYLITQRITYEQ 496
Score = 52 (23.4 bits), Expect = 5.5e-11, Sum P(3) = 5.5e-11
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 33 LIGPGGCIVRRLRKESGAKISIT 55
+IG GG + +L+KE+GA I ++
Sbjct: 64 IIGKGGQTIVQLQKETGATIKLS 86
>UNIPROTKB|P51513 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0007268 "synaptic
transmission" evidence=TAS] [GO:0007626 "locomotory behavior"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0008380 GO:GO:0007268
GO:GO:0003729 GO:GO:0007626 GO:GO:0003723 EMBL:CH471078
GO:GO:0000398 EMBL:U04840 EMBL:AK289639 EMBL:AK291022 EMBL:BC075038
EMBL:BC075039 EMBL:Z70771 IPI:IPI00019244 IPI:IPI00221187
IPI:IPI00221188 IPI:IPI00816603 PIR:I38489 RefSeq:NP_002506.2
RefSeq:NP_006480.2 RefSeq:NP_006482.1 UniGene:Hs.31588 PDB:1DT4
PDB:2ANN PDB:2ANR PDBsum:1DT4 PDBsum:2ANN PDBsum:2ANR
ProteinModelPortal:P51513 SMR:P51513 IntAct:P51513
MINT:MINT-1381951 STRING:P51513 PhosphoSite:P51513 DMDM:1709303
PRIDE:P51513 Ensembl:ENST00000344429 Ensembl:ENST00000539517
GeneID:4857 KEGG:hsa:4857 UCSC:uc001wpy.3 UCSC:uc001wqa.3
UCSC:uc001wqb.3 CTD:4857 GeneCards:GC14M026915 H-InvDB:HIX0037755
HGNC:HGNC:7886 HPA:HPA004155 MIM:602157 neXtProt:NX_P51513
PharmGKB:PA31688 eggNOG:NOG258094 HOGENOM:HOG000007833
HOVERGEN:HBG082048 InParanoid:P51513 KO:K14944 OMA:FRQNNTA
ChiTaRS:NOVA1 EvolutionaryTrace:P51513 GenomeRNAi:4857
NextBio:18710 ArrayExpress:P51513 Bgee:P51513 CleanEx:HS_NOVA1
Genevestigator:P51513 GermOnline:ENSG00000139910 Uniprot:P51513
Length = 510
Score = 120 (47.3 bits), Expect = 7.5e-11, Sum P(3) = 7.5e-11
Identities = 42/131 (32%), Positives = 64/131 (48%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS--DMLPMSTERIVTVHGNPDTIS 182
Q+K+++P + G +IGKGG +K + + SGA VQ++ D + + ER+VTV G P+
Sbjct: 176 QVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQ-ERVVTVSGEPEQNR 234
Query: 183 QAIYQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSG--GQAYTLHGEYAVPVQEVAG 240
+A+ ++ + I+ Q I Y T GPV S G Y E AG
Sbjct: 235 KAV-ELIIQKIQEDPQSGSCLNISYANVT---GPVANSNPTGSPYANTAEVLPTAAAAAG 290
Query: 241 KKQPHPLAGLA 251
LAG+A
Sbjct: 291 LLGHANLAGVA 301
Score = 94 (38.1 bits), Expect = 7.5e-11, Sum P(3) = 7.5e-11
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 282 DTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE----SHKKMFHIQ 337
D D VE I + +++ G ++GK G L+E ++++GA+I I E + + I
Sbjct: 421 DGSKDVVE--IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTIT 478
Query: 338 GCQEAVSLAQYLINMCIELQK 358
G A AQYLI I ++
Sbjct: 479 GTPAATQAAQYLITQRITYEQ 499
Score = 93 (37.8 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS-----DMLPMSTERIVTVHGNPDT 180
LK++IP+ GS+IGKGG I ++ +GA ++++ D P +TER+ + G +
Sbjct: 52 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKLSKSKDFYPGTTERVCLIQGTVEA 111
Query: 181 IS 182
++
Sbjct: 112 LN 113
Score = 52 (23.4 bits), Expect = 7.5e-11, Sum P(3) = 7.5e-11
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 33 LIGPGGCIVRRLRKESGAKISIT 55
+IG GG + +L+KE+GA I ++
Sbjct: 64 IIGKGGQTIVQLQKETGATIKLS 86
>UNIPROTKB|F1MS84 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:DAAA02047389 IPI:IPI00703570 Ensembl:ENSBTAT00000017485
Uniprot:F1MS84
Length = 464
Score = 118 (46.6 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 25/65 (38%), Positives = 41/65 (63%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMST-ERIVTVHGNPDTISQ 183
Q KL++P + G +IGKGG +K + + SGA VQ++ ++ ER+VTV G P+ + +
Sbjct: 104 QAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHK 163
Query: 184 AIYQI 188
A+ I
Sbjct: 164 AVSAI 168
Score = 104 (41.7 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 29/92 (31%), Positives = 50/92 (54%)
Query: 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS--DMLPMSTERIVTVHGNPDTISQ 183
LK++IP+ GS+IGKGG I ++ +GA ++++ D P +TER+ V G + ++
Sbjct: 7 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNA 66
Query: 184 AIYQICLVLIECTLQVVKGAVIPY-EPKT-MN 213
I + E + K V+ +P+T MN
Sbjct: 67 VHSFIAEKVREIPQAMTKPEVVNILQPQTTMN 98
Score = 93 (37.8 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 291 EIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE----SHKKMFHIQGCQEAVSLA 346
EI + +++ G ++GK G L+E ++++GA+I I E + + I G A A
Sbjct: 382 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAA 441
Query: 347 QYLINMCIELQK 358
QYLI+ + ++
Sbjct: 442 QYLISQRVTYEQ 453
Score = 59 (25.8 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 14/61 (22%), Positives = 31/61 (50%)
Query: 289 ETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHT---GTESHKKMFHIQGCQEAVSL 345
+ ++++ + AG +IGK G+ + + + SGA + + G +++ + G E V
Sbjct: 104 QAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHK 163
Query: 346 A 346
A
Sbjct: 164 A 164
Score = 52 (23.4 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 33 LIGPGGCIVRRLRKESGAKISIT 55
+IG GG + +L+KE+GA I ++
Sbjct: 19 IIGKGGQTIVQLQKETGATIKLS 41
>ZFIN|ZDB-GENE-060526-113 [details] [associations]
symbol:nova1 "neuro-oncological ventral antigen 1"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-060526-113 GO:GO:0003723 EMBL:BX005407
GeneTree:ENSGT00650000093048 CTD:4857 eggNOG:NOG258094
HOGENOM:HOG000007833 HOVERGEN:HBG082048 KO:K14944 OMA:FRQNNTA
EMBL:BC171495 EMBL:BC171499 IPI:IPI00487894 RefSeq:NP_001038254.1
UniGene:Dr.103261 SMR:Q1LYC7 Ensembl:ENSDART00000097684
GeneID:555590 KEGG:dre:555590 InParanoid:Q1LYC7 OrthoDB:EOG40ZQZR
NextBio:20881056 Uniprot:Q1LYC7
Length = 495
Score = 114 (45.2 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 36/119 (30%), Positives = 58/119 (48%)
Query: 82 YPGHTLWVTSVDNVCTA----YNFMCRSLEDYHINRNRMENCS---PQPL-------QLK 127
YPG T V + A +NF+ + + + + E S PQ Q K
Sbjct: 99 YPGTTERVCLIQGTVEALNGVHNFIAEKVREMPQSSQKTEPVSILQPQTTVNPDRIKQAK 158
Query: 128 LVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMST-ERIVTVHGNPDTISQAI 185
L++P + G +IGKGG +K + + SGA VQ++ ++ ER+VTV G P+ +A+
Sbjct: 159 LIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQNRKAV 217
Score = 99 (39.9 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 20/59 (33%), Positives = 37/59 (62%)
Query: 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS--DMLPMSTERIVTVHGNPDTIS 182
LK++IP+ GS+IGKGG I ++ +GA ++++ D P +TER+ + G + ++
Sbjct: 59 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALN 117
Score = 98 (39.6 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 27/94 (28%), Positives = 47/94 (50%)
Query: 275 RVKSGGKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE----SH 330
++ GGK+ EI + +++ G ++GK G L+E ++++GA+I I E +
Sbjct: 403 KLAEGGKEV------VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFIPGTR 456
Query: 331 KKMFHIQGCQEAVSLAQYLINMCIELQKN-NTTN 363
+ I G A AQYLI+ I ++ TN
Sbjct: 457 NRKVTITGSPAATQAAQYLISQRITYEQGVRATN 490
Score = 71 (30.1 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
Identities = 28/160 (17%), Positives = 66/160 (41%)
Query: 285 DDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHT---GTESHKKMFHIQGCQE 341
D + ++++ + AG +IGK G+ + + + SGA + + G +++ + G E
Sbjct: 152 DRIKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPE 211
Query: 342 ----AVSLAQYLI------NMCIELQKNNTTNTSDNPEPADLDAAISAFMTASVNSSLIE 391
AV + I + C+ + +N T N P A S + + ++
Sbjct: 212 QNRKAVEIIVQKIQEDPQSSSCLNISYSNITGPVANSNPTGSPFANSTEVLPNAAAAATA 271
Query: 392 KPTPHPGSMVTLGGLSELLANIAASN---VKSTVQTTGAY 428
+ +GG +++++ ++ + S + T +Y
Sbjct: 272 STLLGQAGLAGMGGFPAAMSSLSGNDLLAITSALNTLASY 311
Score = 52 (23.4 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 33 LIGPGGCIVRRLRKESGAKISIT 55
+IG GG + +L+KE+GA I ++
Sbjct: 71 IIGKGGQTIVQLQKETGATIKLS 93
>UNIPROTKB|Q9UNW9 [details] [associations]
symbol:NOVA2 "RNA-binding protein Nova-2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 EMBL:AF083898
GO:GO:0005634 GO:GO:0003723 eggNOG:NOG258094 HOGENOM:HOG000007833
HOVERGEN:HBG082048 KO:K14944 EMBL:U70477 EMBL:AC006540
IPI:IPI00156005 RefSeq:NP_002507.1 UniGene:Hs.375439 PDB:1DTJ
PDB:1EC6 PDBsum:1DTJ PDBsum:1EC6 ProteinModelPortal:Q9UNW9
SMR:Q9UNW9 STRING:Q9UNW9 PhosphoSite:Q9UNW9 DMDM:33516944
PRIDE:Q9UNW9 DNASU:4858 Ensembl:ENST00000263257 GeneID:4858
KEGG:hsa:4858 UCSC:uc002pdv.2 CTD:4858 GeneCards:GC19M046442
HGNC:HGNC:7887 HPA:HPA045607 MIM:601991 neXtProt:NX_Q9UNW9
PharmGKB:PA31689 InParanoid:Q9UNW9 OMA:TPPEVVC PhylomeDB:Q9UNW9
EvolutionaryTrace:Q9UNW9 GenomeRNAi:4858 NextBio:18718
ArrayExpress:Q9UNW9 Bgee:Q9UNW9 CleanEx:HS_NOVA2
Genevestigator:Q9UNW9 GermOnline:ENSG00000104967 Uniprot:Q9UNW9
Length = 492
Score = 118 (46.6 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 25/65 (38%), Positives = 41/65 (63%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMST-ERIVTVHGNPDTISQ 183
Q KL++P + G +IGKGG +K + + SGA VQ++ ++ ER+VTV G P+ + +
Sbjct: 132 QAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHK 191
Query: 184 AIYQI 188
A+ I
Sbjct: 192 AVSAI 196
Score = 104 (41.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 29/92 (31%), Positives = 50/92 (54%)
Query: 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS--DMLPMSTERIVTVHGNPDTISQ 183
LK++IP+ GS+IGKGG I ++ +GA ++++ D P +TER+ V G + ++
Sbjct: 35 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNA 94
Query: 184 AIYQICLVLIECTLQVVKGAVIPY-EPKT-MN 213
I + E + K V+ +P+T MN
Sbjct: 95 VHSFIAEKVREIPQAMTKPEVVNILQPQTTMN 126
Score = 93 (37.8 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 291 EIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE----SHKKMFHIQGCQEAVSLA 346
EI + +++ G ++GK G L+E ++++GA+I I E + + I G A A
Sbjct: 410 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAA 469
Query: 347 QYLINMCIELQK 358
QYLI+ + ++
Sbjct: 470 QYLISQRVTYEQ 481
Score = 59 (25.8 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 14/61 (22%), Positives = 31/61 (50%)
Query: 289 ETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHT---GTESHKKMFHIQGCQEAVSL 345
+ ++++ + AG +IGK G+ + + + SGA + + G +++ + G E V
Sbjct: 132 QAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHK 191
Query: 346 A 346
A
Sbjct: 192 A 192
Score = 52 (23.4 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 33 LIGPGGCIVRRLRKESGAKISIT 55
+IG GG + +L+KE+GA I ++
Sbjct: 47 IIGKGGQTIVQLQKETGATIKLS 69
>UNIPROTKB|F1PUD6 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:AAEX03000869 EMBL:AAEX03000868 Ensembl:ENSCAFT00000006989
Uniprot:F1PUD6
Length = 502
Score = 118 (46.6 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 25/65 (38%), Positives = 41/65 (63%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMST-ERIVTVHGNPDTISQ 183
Q KL++P + G +IGKGG +K + + SGA VQ++ ++ ER+VTV G P+ + +
Sbjct: 142 QAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHK 201
Query: 184 AIYQI 188
A+ I
Sbjct: 202 AVSAI 206
Score = 104 (41.7 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 29/92 (31%), Positives = 50/92 (54%)
Query: 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS--DMLPMSTERIVTVHGNPDTISQ 183
LK++IP+ GS+IGKGG I ++ +GA ++++ D P +TER+ V G + ++
Sbjct: 45 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNA 104
Query: 184 AIYQICLVLIECTLQVVKGAVIPY-EPKT-MN 213
I + E + K V+ +P+T MN
Sbjct: 105 VHSFIAEKVREIPQAMTKPEVVNILQPQTTMN 136
Score = 93 (37.8 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 291 EIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE----SHKKMFHIQGCQEAVSLA 346
EI + +++ G ++GK G L+E ++++GA+I I E + + I G A A
Sbjct: 420 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAA 479
Query: 347 QYLINMCIELQK 358
QYLI+ + ++
Sbjct: 480 QYLISQRVTYEQ 491
Score = 59 (25.8 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 14/61 (22%), Positives = 31/61 (50%)
Query: 289 ETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHT---GTESHKKMFHIQGCQEAVSL 345
+ ++++ + AG +IGK G+ + + + SGA + + G +++ + G E V
Sbjct: 142 QAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHK 201
Query: 346 A 346
A
Sbjct: 202 A 202
Score = 52 (23.4 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 33 LIGPGGCIVRRLRKESGAKISIT 55
+IG GG + +L+KE+GA I ++
Sbjct: 57 IIGKGGQTIVQLQKETGATIKLS 79
>TAIR|locus:2035807 [details] [associations]
symbol:AT1G14170 "AT1G14170" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009737 "response to abscisic acid stimulus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009737 GO:GO:0003723 EMBL:AC007576
KO:K13162 HOGENOM:HOG000240086 IPI:IPI00521103 PIR:C86275
RefSeq:NP_001117282.1 UniGene:At.43386 ProteinModelPortal:Q9XI71
SMR:Q9XI71 PRIDE:Q9XI71 EnsemblPlants:AT1G14170.3 GeneID:837976
KEGG:ath:AT1G14170 TAIR:At1g14170 OMA:GATIRVN PhylomeDB:Q9XI71
ProtClustDB:CLSN2690952 Genevestigator:Q9XI71 Uniprot:Q9XI71
Length = 479
Score = 135 (52.6 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 45/241 (18%), Positives = 110/241 (45%)
Query: 10 DEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDG--ACPDRIXXXX 67
D++ + + ++ V + +IG GG I +++R E+ + + I + C +R+
Sbjct: 35 DQNVIASEDTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMY 94
Query: 68 XXXXXXXXXXXXXGYPGHTLWVTSVDNVCTAYNFMCRSLEDYHINRNRMENCSPQPLQLK 127
G G L ++D + ++ + + + + Q + ++
Sbjct: 95 STNEELNHF----GDDGE-LVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVR 149
Query: 128 LVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLP-----MSTERIVTVHGNPDTIS 182
+++P+ G +IGKGG I+++R+ + A ++V D LP +S + ++ + G P +
Sbjct: 150 MLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVIKDHLPACALTLSHDELLLIIGEPLVVR 209
Query: 183 QAIYQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEVAGKK 242
+A+YQ+ +L + + + ++ +M+ +L + H YAV +++A +
Sbjct: 210 EALYQVASLLHDNPSRF-QHLLLSSSSSSMHQPGAMLMSAALTSSHRNYAVR-RDIADAR 267
Query: 243 Q 243
+
Sbjct: 268 E 268
Score = 106 (42.4 bits), Expect = 0.00052, Sum P(2) = 0.00051
Identities = 27/96 (28%), Positives = 52/96 (54%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS--DM--LPMSTERIVTVHGNPD 179
+ +L++ ++ G LIGKGG I ++R ++ AN+++ D+ + E +V + G+PD
Sbjct: 354 ISTRLLVSSSQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIAREDEEMVQITGSPD 413
Query: 180 TISQAIYQICLVLIECTLQVVKGAVI-----PYEPK 210
+A+ Q+ L L + + G V+ PY P+
Sbjct: 414 AAMKALTQVILRLRANSFDMDHGLVLLPTSFPYIPQ 449
Score = 87 (35.7 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 25/87 (28%), Positives = 43/87 (49%)
Query: 280 GKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTESHK------KM 333
GKD D + T ++++ GC+IGK G+ + E+R ++ A I I + K +M
Sbjct: 346 GKDANDLAISTRLLVSSSQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIAREDEEM 405
Query: 334 FHIQGCQEAVSLAQYLINMCIELQKNN 360
I G +A A L + + L+ N+
Sbjct: 406 VQITGSPDAAMKA--LTQVILRLRANS 430
Score = 71 (30.1 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 38/144 (26%), Positives = 66/144 (45%)
Query: 281 KDTGD--DFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTG-TESHKKMFHIQ 337
+D D +F I +++ G VIGK G + +IRQ +GA I ++T T+ + I
Sbjct: 261 RDIADAREFCVCFICPAENVGG-VIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFIS 319
Query: 338 GCQEAVSLAQYLINMCIELQKNNTTNTSDNPEPADLDAAISAFMTASVNSSLIEKPTPHP 397
+E +N I LQ+ + + D AIS + V+SS I
Sbjct: 320 S-KEFYEDQSPAVNAAIRLQQRCSEKVGKDAN----DLAISTRLL--VSSSQI------- 365
Query: 398 GSMVTLGG--LSELLANIAASNVK 419
G ++ GG +SE+ ++ +N++
Sbjct: 366 GCLIGKGGAVISEM-RSVTRANIR 388
Score = 55 (24.4 bits), Expect = 0.00052, Sum P(2) = 0.00051
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 19 CLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPD 61
C + NV + IG GG + ++R+E+GA I + D
Sbjct: 272 CFICPAENVGGV---IGKGGGFINQIRQETGATIRVNTSETDD 311
>UNIPROTKB|F1RM28 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:FP102597 Ensembl:ENSSSCT00000003434 Uniprot:F1RM28
Length = 554
Score = 118 (46.6 bits), Expect = 2.2e-10, Sum P(3) = 2.2e-10
Identities = 25/65 (38%), Positives = 41/65 (63%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMST-ERIVTVHGNPDTISQ 183
Q KL++P + G +IGKGG +K + + SGA VQ++ ++ ER+VTV G P+ + +
Sbjct: 194 QAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHK 253
Query: 184 AIYQI 188
A+ I
Sbjct: 254 AVSAI 258
Score = 104 (41.7 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 29/92 (31%), Positives = 50/92 (54%)
Query: 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS--DMLPMSTERIVTVHGNPDTISQ 183
LK++IP+ GS+IGKGG I ++ +GA ++++ D P +TER+ V G + ++
Sbjct: 97 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNA 156
Query: 184 AIYQICLVLIECTLQVVKGAVIPY-EPKT-MN 213
I + E + K V+ +P+T MN
Sbjct: 157 VHSFIAEKVREIPQAMTKPEVVNILQPQTTMN 188
Score = 93 (37.8 bits), Expect = 2.2e-10, Sum P(3) = 2.2e-10
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 291 EIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE----SHKKMFHIQGCQEAVSLA 346
EI + +++ G ++GK G L+E ++++GA+I I E + + I G A A
Sbjct: 472 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAA 531
Query: 347 QYLINMCIELQK 358
QYLI+ + ++
Sbjct: 532 QYLISQRVTYEQ 543
Score = 59 (25.8 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 14/61 (22%), Positives = 31/61 (50%)
Query: 289 ETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHT---GTESHKKMFHIQGCQEAVSL 345
+ ++++ + AG +IGK G+ + + + SGA + + G +++ + G E V
Sbjct: 194 QAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHK 253
Query: 346 A 346
A
Sbjct: 254 A 254
Score = 52 (23.4 bits), Expect = 2.2e-10, Sum P(3) = 2.2e-10
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 33 LIGPGGCIVRRLRKESGAKISIT 55
+IG GG + +L+KE+GA I ++
Sbjct: 109 IIGKGGQTIVQLQKETGATIKLS 131
>UNIPROTKB|G3N2N4 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048 KO:K14944
EMBL:DAAA02052552 EMBL:DAAA02052553 RefSeq:XP_001257255.3
Ensembl:ENSBTAT00000065126 GeneID:790874 KEGG:bta:790874
NextBio:20930383 Uniprot:G3N2N4
Length = 385
Score = 121 (47.7 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 43/131 (32%), Positives = 64/131 (48%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS--DMLPMSTERIVTVHGNPDTIS 182
Q+K+++P + G +IGKGG +K I + SGA VQ++ D + + ER+VTV G P+
Sbjct: 51 QVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQ-ERVVTVSGEPEQNR 109
Query: 183 QAIYQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSG--GQAYTLHGEYAVPVQEVAG 240
+A+ ++ + I+ Q I Y T GPV S G Y E AG
Sbjct: 110 KAV-ELIIQKIQEDPQSGSCLNISYANVT---GPVANSNPTGSPYANTAEVLPTAAAAAG 165
Query: 241 KKQPHPLAGLA 251
LAG+A
Sbjct: 166 LLGHANLAGVA 176
Score = 94 (38.1 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 282 DTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE----SHKKMFHIQ 337
D D VE I + +++ G ++GK G L+E ++++GA+I I E + + I
Sbjct: 296 DGSKDVVE--IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTIT 353
Query: 338 GCQEAVSLAQYLINMCIELQK 358
G A AQYLI I ++
Sbjct: 354 GTPAATQAAQYLITQRITYEQ 374
>UNIPROTKB|F1MBI6 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 EMBL:DAAA02052552
EMBL:DAAA02052553 IPI:IPI01028075 Ensembl:ENSBTAT00000031237
Uniprot:F1MBI6
Length = 389
Score = 121 (47.7 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 43/131 (32%), Positives = 64/131 (48%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS--DMLPMSTERIVTVHGNPDTIS 182
Q+K+++P + G +IGKGG +K I + SGA VQ++ D + + ER+VTV G P+
Sbjct: 55 QVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQ-ERVVTVSGEPEQNR 113
Query: 183 QAIYQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSG--GQAYTLHGEYAVPVQEVAG 240
+A+ ++ + I+ Q I Y T GPV S G Y E AG
Sbjct: 114 KAV-ELIIQKIQEDPQSGSCLNISYANVT---GPVANSNPTGSPYANTAEVLPTAAAAAG 169
Query: 241 KKQPHPLAGLA 251
LAG+A
Sbjct: 170 LLGHANLAGVA 180
Score = 94 (38.1 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 282 DTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE----SHKKMFHIQ 337
D D VE I + +++ G ++GK G L+E ++++GA+I I E + + I
Sbjct: 300 DGSKDVVE--IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTIT 357
Query: 338 GCQEAVSLAQYLINMCIELQK 358
G A AQYLI I ++
Sbjct: 358 GTPAATQAAQYLITQRITYEQ 378
>UNIPROTKB|Q5T6W2 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
GO:GO:0030529 EMBL:AL354733 HOGENOM:HOG000019764 HOVERGEN:HBG051916
InterPro:IPR012987 Pfam:PF08067 UniGene:Hs.522257 HGNC:HGNC:5044
ChiTaRS:HNRNPK IPI:IPI00910458 SMR:Q5T6W2 Ensembl:ENST00000457156
Uniprot:Q5T6W2
Length = 379
Score = 133 (51.9 bits), Expect = 6.2e-10, Sum P(3) = 6.2e-10
Identities = 33/105 (31%), Positives = 59/105 (56%)
Query: 105 SLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDML 164
+LE+Y + +C +L+L+I + G +IG G KIK++R+ + +++ +
Sbjct: 107 TLEEYQHYKGSDFDC-----ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECC 161
Query: 165 PMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVVKGAVIPYEP 209
P ST+R+V + G PD + + I +I L LI + +KG PY+P
Sbjct: 162 PHSTDRVVLIGGKPDRVVECI-KIILDLI--SESPIKGRAQPYDP 203
Score = 71 (30.1 bits), Expect = 6.2e-10, Sum P(3) = 6.2e-10
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 12 DTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
D ++ +R L S N + IG GG ++ LR + A +S+ D + P+RI
Sbjct: 40 DEMVELRILLQSK-NAGAV---IGKGGKNIKALRTDYNASVSVPDSSGPERI 87
Score = 45 (20.9 bits), Expect = 6.2e-10, Sum P(3) = 6.2e-10
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 282 DTGDDFVETEIVLTDDIAGCVI 303
D G + T++ + D+AG +I
Sbjct: 358 DLGGPIITTQVTIPKDLAGSII 379
>UNIPROTKB|F1NP94 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048
OMA:FRQNNTA EMBL:AADN02003296 EMBL:AADN02003297 EMBL:AADN02003298
EMBL:AADN02003299 EMBL:AADN02003300 EMBL:AADN02003301
EMBL:AADN02003302 EMBL:AADN02003303 EMBL:AADN02003304
EMBL:AADN02003305 EMBL:AADN02003306 EMBL:AADN02003307
EMBL:AADN02003308 EMBL:AADN02003309 EMBL:AADN02003310
EMBL:AADN02003311 EMBL:AADN02003312 EMBL:AADN02003313
EMBL:AADN02003314 EMBL:AADN02003315 IPI:IPI00584544
Ensembl:ENSGALT00000016013 ArrayExpress:F1NP94 Uniprot:F1NP94
Length = 413
Score = 121 (47.7 bits), Expect = 7.1e-10, Sum P(2) = 7.1e-10
Identities = 43/131 (32%), Positives = 64/131 (48%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS--DMLPMSTERIVTVHGNPDTIS 182
Q+K+++P + G +IGKGG +K I + SGA VQ++ D + + ER+VTV G P+
Sbjct: 79 QVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQ-ERVVTVSGEPEQNR 137
Query: 183 QAIYQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSG--GQAYTLHGEYAVPVQEVAG 240
+A+ ++ + I+ Q I Y T GPV S G Y E AG
Sbjct: 138 KAV-ELIIQKIQEDPQSGSCLNISYANVT---GPVANSNPTGSPYANTAEVLPTAAAAAG 193
Query: 241 KKQPHPLAGLA 251
LAG+A
Sbjct: 194 LLGHANLAGVA 204
Score = 94 (38.1 bits), Expect = 7.1e-10, Sum P(2) = 7.1e-10
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 282 DTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE----SHKKMFHIQ 337
D D VE I + +++ G ++GK G L+E ++++GA+I I E + + I
Sbjct: 324 DGSKDVVE--IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTIT 381
Query: 338 GCQEAVSLAQYLINMCIELQK 358
G A AQYLI I ++
Sbjct: 382 GTPAATQAAQYLITQRITYEQ 402
>UNIPROTKB|F1SGT5 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048
OMA:FRQNNTA EMBL:CT826400 Ensembl:ENSSSCT00000031969 Uniprot:F1SGT5
Length = 417
Score = 121 (47.7 bits), Expect = 7.3e-10, Sum P(2) = 7.3e-10
Identities = 43/131 (32%), Positives = 64/131 (48%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS--DMLPMSTERIVTVHGNPDTIS 182
Q+K+++P + G +IGKGG +K I + SGA VQ++ D + + ER+VTV G P+
Sbjct: 83 QVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQ-ERVVTVSGEPEQNR 141
Query: 183 QAIYQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSG--GQAYTLHGEYAVPVQEVAG 240
+A+ ++ + I+ Q I Y T GPV S G Y E AG
Sbjct: 142 KAV-ELIIQKIQEDPQSGSCLNISYANVT---GPVANSNPTGSPYANTAEVLPTAAAAAG 197
Query: 241 KKQPHPLAGLA 251
LAG+A
Sbjct: 198 LLGHANLAGVA 208
Score = 94 (38.1 bits), Expect = 7.3e-10, Sum P(2) = 7.3e-10
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 282 DTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE----SHKKMFHIQ 337
D D VE I + +++ G ++GK G L+E ++++GA+I I E + + I
Sbjct: 328 DGSKDVVE--IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTIT 385
Query: 338 GCQEAVSLAQYLINMCIELQK 358
G A AQYLI I ++
Sbjct: 386 GTPAATQAAQYLITQRITYEQ 406
>UNIPROTKB|B7Z770 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003729 GO:GO:0000398 IPI:IPI00019244
UniGene:Hs.31588 HGNC:HGNC:7886 HOVERGEN:HBG082048 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 EMBL:AK301526 ProteinModelPortal:B7Z770
SMR:B7Z770 STRING:B7Z770 PRIDE:B7Z770 Ensembl:ENST00000267422
ArrayExpress:B7Z770 Bgee:B7Z770 Uniprot:B7Z770
Length = 385
Score = 120 (47.3 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 42/131 (32%), Positives = 64/131 (48%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS--DMLPMSTERIVTVHGNPDTIS 182
Q+K+++P + G +IGKGG +K + + SGA VQ++ D + + ER+VTV G P+
Sbjct: 51 QVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQ-ERVVTVSGEPEQNR 109
Query: 183 QAIYQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSG--GQAYTLHGEYAVPVQEVAG 240
+A+ ++ + I+ Q I Y T GPV S G Y E AG
Sbjct: 110 KAV-ELIIQKIQEDPQSGSCLNISYANVT---GPVANSNPTGSPYANTAEVLPTAAAAAG 165
Query: 241 KKQPHPLAGLA 251
LAG+A
Sbjct: 166 LLGHANLAGVA 176
Score = 94 (38.1 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 282 DTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE----SHKKMFHIQ 337
D D VE I + +++ G ++GK G L+E ++++GA+I I E + + I
Sbjct: 296 DGSKDVVE--IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTIT 353
Query: 338 GCQEAVSLAQYLINMCIELQK 358
G A AQYLI I ++
Sbjct: 354 GTPAATQAAQYLITQRITYEQ 374
>TAIR|locus:2161413 [details] [associations]
symbol:AT5G46190 "AT5G46190" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0003723 EMBL:AB006698 HSSP:Q96AE4
KO:K13162 EMBL:AY039918 EMBL:AY113859 IPI:IPI00528964
RefSeq:NP_199431.1 UniGene:At.24400 ProteinModelPortal:Q9FNK3
SMR:Q9FNK3 IntAct:Q9FNK3 PRIDE:Q9FNK3 EnsemblPlants:AT5G46190.1
GeneID:834661 KEGG:ath:AT5G46190 TAIR:At5g46190 InParanoid:Q9FNK3
OMA:GCIIGKS PhylomeDB:Q9FNK3 ProtClustDB:CLSN2916231
ArrayExpress:Q9FNK3 Genevestigator:Q9FNK3 Uniprot:Q9FNK3
Length = 644
Score = 133 (51.9 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 52/216 (24%), Positives = 95/216 (43%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS-DML-PMST-----ERIVTVHGN 177
+ +L++P++ C +IGK G IK+IR + ANV+V S D+ P T + IV + G
Sbjct: 151 ECRLLVPSSQCSIVIGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMISGE 210
Query: 178 PDTISQAIYQICLVLIECTLQVVKGAVIPYEPKTMN--AGPVILSGGQAYTLHGEYAVPV 235
+++ +A++ + ++ + V IP + A +I S Y G Y P
Sbjct: 211 TESVKKALFAVSAIMYK----VSPREQIPLDTTVQEVPASIIIPSDLSIYPQAGLY--PS 264
Query: 236 QEVAGKKQPHPLAGLAVLGIEGIXXXXXXXXXXXXXXXXRVKSG-GKDTGDDFVETEIVL 294
Q+ + + + + L +G V G G + + + +++
Sbjct: 265 QDSIFQHGANVSSFIGTLP-QGYGENAANPVPVFSASALPVVHGFGGSSRSEKLAIKVIC 323
Query: 295 TDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTESH 330
+ G VIGK G + IRQ SG+ I ++ +H
Sbjct: 324 SSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNH 359
Score = 101 (40.6 bits), Expect = 9.5e-10, Sum P(3) = 9.5e-10
Identities = 31/116 (26%), Positives = 63/116 (54%)
Query: 282 DTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTESHK------KMFH 335
D +D V+ +++++ + GC+IGK+GS + EIR+ + A I+I G + K ++
Sbjct: 393 DEDEDKVKMQLLVSSKVIGCIIGKSGSIISEIRKRTKADIHISKGNNTPKCADPNDELVE 452
Query: 336 IQGCQEAV--SLAQYLINMCIELQKNNTTNTSDNPEPADLDAAISAFMTASVNSSL 389
I G V +L Q ++ + ++ ++ T + + P PA + + F ++S N+ L
Sbjct: 453 ISGEVSNVRDALIQIVLRLRDDVLRDRETGSRNQP-PARSENN-NFFSSSSSNTGL 506
Score = 96 (38.9 bits), Expect = 9.5e-10, Sum P(3) = 9.5e-10
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 122 QPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHG--NPD 179
+ L +K++ ++ G +IGKGG IK IR SG++++V + ++TV +PD
Sbjct: 315 EKLAIKVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVTATESPD 374
Query: 180 TISQAIYQICLVLIE 194
+ + L+L E
Sbjct: 375 DLKSMAVEAVLLLQE 389
Score = 79 (32.9 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 19/66 (28%), Positives = 35/66 (53%)
Query: 109 YHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMST 168
Y +++N + +++ P+ GS+IGK G I IR + A ++V D P +
Sbjct: 29 YESEEKKIDNKDDLVVVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVV-DPFPGCS 87
Query: 169 ERIVTV 174
ER++T+
Sbjct: 88 ERVITI 93
Score = 76 (31.8 bits), Expect = 3.4e-07, Sum P(3) = 3.4e-07
Identities = 22/65 (33%), Positives = 31/65 (47%)
Query: 291 EIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTESHK-KMFHIQGCQEAVSLAQYL 349
E+ + + G V+G+ G L IR+ISGA I I SH ++ I G E A+ L
Sbjct: 577 EVRIPANAVGKVMGRGGGNLDNIRRISGAMIEISDSKNSHGGRVALISGTSEQKRTAENL 636
Query: 350 INMCI 354
I
Sbjct: 637 FQAFI 641
Score = 70 (29.7 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 19/79 (24%), Positives = 41/79 (51%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS-DMLPMSTE---RIVTVHGNPD 179
++++L++ + G +IGK G I +IR + A++ ++ + P + +V + G
Sbjct: 399 VKMQLLVSSKVIGCIIGKSGSIISEIRKRTKADIHISKGNNTPKCADPNDELVEISGEVS 458
Query: 180 TISQAIYQICLVLIECTLQ 198
+ A+ QI L L + L+
Sbjct: 459 NVRDALIQIVLRLRDDVLR 477
Score = 64 (27.6 bits), Expect = 9.5e-10, Sum P(3) = 9.5e-10
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 8 KID--EDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDG--ACPDRI 63
KID +D ++ R L S V + +IG G ++ +R+E+ A+I + D C +R+
Sbjct: 35 KIDNKDDLVVVYRILCPSGV----MGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERV 90
Score = 55 (24.4 bits), Expect = 7.6e-09, Sum P(3) = 7.6e-09
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 8 KIDEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISI 54
KID D R L SS + S +IG G I++ +R + A + +
Sbjct: 143 KIDRDDFRECRLLVPSS----QCSIVIGKSGSIIKNIRGRTRANVKV 185
>RGD|1308032 [details] [associations]
symbol:Nova2 "neuro-oncological ventral antigen 2" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1308032 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00650000093048 IPI:IPI00958388
Ensembl:ENSRNOT00000057965 Uniprot:F1M4H5
Length = 516
Score = 120 (47.3 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 42/157 (26%), Positives = 72/157 (45%)
Query: 33 LIGPGGCIVRRLRKESGAKISITDGACPDRIXXXXXXXXXXXXXXXXXGYPGHTLWVTSV 92
+IG GG + +L+KE+GA I ++ D H+ V
Sbjct: 71 IIGKGGQTIVQLQKETGATIKLSKSK--DFYPGTTERVCLVQGTAEALN-AAHSFIAEKV 127
Query: 93 DNVCTAYNFMCRSLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDL 152
+ A M + E +I + + + Q KL++P + G +IGKGG +K + +
Sbjct: 128 REIPQA---MTKP-EVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQ 183
Query: 153 SGANVQVASDMLPMST-ERIVTVHGNPDTISQAIYQI 188
SGA VQ++ ++ ER+VTV G P+ + +A+ I
Sbjct: 184 SGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAI 220
Score = 108 (43.1 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 30/92 (32%), Positives = 51/92 (55%)
Query: 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS--DMLPMSTERIVTVHGNPDTISQ 183
LK++IP+ GS+IGKGG I ++ +GA ++++ D P +TER+ V G + ++
Sbjct: 59 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNA 118
Query: 184 AIYQICLVLIECTLQVVKGAVIPY-EPKT-MN 213
A I + E + K V+ +P+T MN
Sbjct: 119 AHSFIAEKVREIPQAMTKPEVVNILQPQTTMN 150
Score = 93 (37.8 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 291 EIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE----SHKKMFHIQGCQEAVSLA 346
EI + +++ G ++GK G L+E ++++GA+I I E + + I G A A
Sbjct: 434 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAA 493
Query: 347 QYLINMCIELQK 358
QYLI+ + ++
Sbjct: 494 QYLISQRVTYEQ 505
Score = 59 (25.8 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 14/61 (22%), Positives = 31/61 (50%)
Query: 289 ETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHT---GTESHKKMFHIQGCQEAVSL 345
+ ++++ + AG +IGK G+ + + + SGA + + G +++ + G E V
Sbjct: 156 QAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHK 215
Query: 346 A 346
A
Sbjct: 216 A 216
>ZFIN|ZDB-GENE-080211-1 [details] [associations]
symbol:nova2 "neuro-oncological ventral antigen 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-080211-1 GO:GO:0003723 eggNOG:NOG258094
HOGENOM:HOG000007833 HOVERGEN:HBG082048 EMBL:AY597523
IPI:IPI01006797 UniGene:Dr.77006 OrthoDB:EOG4D26RK
ArrayExpress:Q53B45 Uniprot:Q53B45
Length = 473
Score = 118 (46.6 bits), Expect = 7.5e-09, Sum P(3) = 7.5e-09
Identities = 43/133 (32%), Positives = 64/133 (48%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS--DMLPMSTERIVTVHGNPDTIS 182
Q KLV+P + G +IGKGG +K + + SGA VQ++ D + + ER+VT+ G P+
Sbjct: 162 QAKLVVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQ-ERVVTISGEPEQNR 220
Query: 183 QAIYQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSG--GQAYTLHGEYAVPVQEVAG 240
+A+ +I + I+ Q I Y + +GPV S G Y E +P A
Sbjct: 221 KAV-EIIVQKIQEDPQSSSCLNISY---SNISGPVANSNPTGSPYANSAE-VMPAAAAAA 275
Query: 241 KKQPHPLAGLAVL 253
L G A L
Sbjct: 276 AATASSLLGQASL 288
Score = 99 (39.9 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 20/59 (33%), Positives = 37/59 (62%)
Query: 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS--DMLPMSTERIVTVHGNPDTIS 182
LK++IP+ GS+IGKGG I ++ +GA ++++ D P +TER+ + G + ++
Sbjct: 65 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALN 123
Score = 75 (31.5 bits), Expect = 7.5e-09, Sum P(3) = 7.5e-09
Identities = 12/33 (36%), Positives = 24/33 (72%)
Query: 291 EIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI 323
EI + +++ G ++GK G L+E ++++GA+I I
Sbjct: 420 EIAVPENLVGAILGKGGKTLVEYQELTGARIQI 452
Score = 60 (26.2 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 25/108 (23%), Positives = 46/108 (42%)
Query: 285 DDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHT---GTESHKKMFHIQGCQE 341
D + ++V+ + AG +IGK G+ + + + SGA + + G +++ I G E
Sbjct: 158 DRVKQAKLVVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTISGEPE 217
Query: 342 ----AVSLAQYLI------NMCIELQKNNTTNTSDNPEPADLDAAISA 379
AV + I + C+ + +N + N P A SA
Sbjct: 218 QNRKAVEIIVQKIQEDPQSSSCLNISYSNISGPVANSNPTGSPYANSA 265
Score = 52 (23.4 bits), Expect = 7.5e-09, Sum P(3) = 7.5e-09
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 33 LIGPGGCIVRRLRKESGAKISIT 55
+IG GG + +L+KE+GA I ++
Sbjct: 77 IIGKGGQTIVQLQKETGATIKLS 99
>TAIR|locus:2184362 [details] [associations]
symbol:BTR1L "AT5G04430" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0003727
"single-stranded RNA binding" evidence=IPI] [GO:0046719 "regulation
of viral protein levels in host cell" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0008380 GO:GO:0003727 KO:K14944
IPI:IPI00533577 RefSeq:NP_850764.1 UniGene:At.4918
ProteinModelPortal:F4JW99 SMR:F4JW99 PRIDE:F4JW99
EnsemblPlants:AT5G04430.2 GeneID:830322 KEGG:ath:AT5G04430
OMA:RNIMEIT PhylomeDB:F4JW99 GO:GO:0046719 Uniprot:F4JW99
Length = 334
Score = 100 (40.3 bits), Expect = 2.2e-08, Sum P(3) = 2.2e-08
Identities = 30/119 (25%), Positives = 60/119 (50%)
Query: 82 YPGHTLWVTSVD-NVCTAYNFMCRSLEDYHINRNRMENCSPQPLQ-LKLVIPATHCGSLI 139
+PG T + + ++ N + L+ H + + +P + ++LV+P + CG +I
Sbjct: 77 FPGTTDRIIMISGSIKEVVNGLELILDKLHSELHAEDGNEVEPRRRIRLVVPNSSCGGII 136
Query: 140 GKGGCKIKDIRDLSGANVQVA--SDMLPMSTERIVTVHGNPDTISQAIYQICLVLIECT 196
GKGG IK + S A ++++ + ++R+VT+ G T + + I L+L + T
Sbjct: 137 GKGGATIKSFIEESKAGIKISPLDNTFYGLSDRLVTLSG---TFEEQMRAIDLILAKLT 192
Score = 96 (38.9 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 21/73 (28%), Positives = 42/73 (57%)
Query: 122 QPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVA--SDMLPMSTERIVTVHGNPD 179
+P ++ ++ GS+IGKGG I + + SGA +Q++ + P +T+RI+ + G+
Sbjct: 33 KPTHIRFLVSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIMISGS-- 90
Query: 180 TISQAIYQICLVL 192
I + + + L+L
Sbjct: 91 -IKEVVNGLELIL 102
Score = 90 (36.7 bits), Expect = 2.2e-08, Sum P(3) = 2.2e-08
Identities = 28/95 (29%), Positives = 46/95 (48%)
Query: 278 SGGK-DTGDDFVETEIVL--TDDIAGCVIGKAGSRLLEIRQISGAQINIH------TGTE 328
SGGK + T + + D+ G V+G+ G ++EI Q++GA+I I +GT
Sbjct: 242 SGGKYQNHKEEASTTVTIGVADEHIGLVLGRGGRNIMEITQMTGARIKISDRGDFMSGTT 301
Query: 329 SHKKMFHIQGCQEAVSLAQYLINMCIELQKNNTTN 363
K I G Q A+ A+ +I ++ TT+
Sbjct: 302 DRK--VSITGPQRAIQQAETMIKQKVDSATERTTD 334
Score = 46 (21.3 bits), Expect = 2.2e-08, Sum P(3) = 2.2e-08
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 33 LIGPGGCIVRRLRKESGAKISIT 55
+IG GG + + +SGA+I ++
Sbjct: 49 VIGKGGSTITEFQAKSGARIQLS 71
>FB|FBgn0261552 [details] [associations]
symbol:ps "pasilla" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEP] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
GO:GO:0000398 HSSP:Q9UNW9 FlyBase:FBgn0261552 EMBL:BT001623
ProteinModelPortal:Q8IGS7 PRIDE:Q8IGS7 InParanoid:Q8IGS7
ArrayExpress:Q8IGS7 Bgee:Q8IGS7 Uniprot:Q8IGS7
Length = 605
Score = 110 (43.8 bits), Expect = 3.9e-08, Sum P(3) = 3.9e-08
Identities = 24/71 (33%), Positives = 42/71 (59%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMST-ERIVTVHGNPDTISQ 183
Q+K+++P + G +IGKGG IK I++ SG+ VQ++ +S ER +T+ G+ +
Sbjct: 193 QVKILVPNSTAGMIIGKGGAFIKQIKEESGSYVQISQKPTDVSLQERCITIIGDKENNKN 252
Query: 184 AIYQICLVLIE 194
A I ++E
Sbjct: 253 ACKMILSKIVE 263
Score = 99 (39.9 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 20/58 (34%), Positives = 37/58 (63%)
Query: 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS--DMLPMSTERIVTVHGNPDTI 181
+K+++PA G++IGKGG I ++ +GA V+++ D P +TER+ + G+ + I
Sbjct: 101 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEAI 158
Score = 80 (33.2 bits), Expect = 3.9e-08, Sum P(3) = 3.9e-08
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 298 IAGCVIGKAGSRLLEIRQISGAQINIHT----GTESHKKMFHIQGCQEAVSLAQYLINMC 353
I G ++G +G L+EI+ +SGA + I + ++ I G A++ AQYLI
Sbjct: 527 IIGAILGPSGRSLVEIQHVSGANVQISKKGIFAPGTRNRIVTITGQPSAIAKAQYLIEQK 586
Query: 354 I 354
I
Sbjct: 587 I 587
Score = 79 (32.9 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 39/150 (26%), Positives = 69/150 (46%)
Query: 276 VKSGGKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIH---TGTESHKK 332
V + K T + + +I++ + AG +IGK G+ + +I++ SG+ + I T ++
Sbjct: 180 VDTDSKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQIKEESGSYVQISQKPTDVSLQER 239
Query: 333 MFHIQGCQEAVSLAQYLINMCIELQKNNTTNTSDNPEPADLDAAISAFM-TAS---VNSS 388
I G +E A +I ++ ++ + T N AD+ ++ F T S N +
Sbjct: 240 CITIIGDKENNKNACKMI--LSKIVEDPQSGTCLNVSYADVSGPVANFNPTGSPYATNQN 297
Query: 389 LIEKPTPHPGSMV--TLGGLSELLANIAAS 416
I T S + T+GG AN AAS
Sbjct: 298 AINSSTASLNSTLGTTIGG-----ANSAAS 322
Score = 53 (23.7 bits), Expect = 3.9e-08, Sum P(3) = 3.9e-08
Identities = 10/37 (27%), Positives = 23/37 (62%)
Query: 21 FHSSVNVNEIS--CLIGPGGCIVRRLRKESGAKISIT 55
+H + V ++ +IG GG + L+K++GA++ ++
Sbjct: 99 YHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMS 135
>SGD|S000000128 [details] [associations]
symbol:HEK2 "RNA binding protein involved in asymmetric
localization of ASH1 mRNA" species:4932 "Saccharomyces cerevisiae"
[GO:0008298 "intracellular mRNA localization" evidence=IMP;IPI]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0007004 "telomere maintenance via
telomerase" evidence=IMP;IPI] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0000784 "nuclear chromosome, telomeric region"
evidence=IDA] [GO:0000781 "chromosome, telomeric region"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IGI;IMP] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 SGD:S000000128 GO:GO:0006417
GO:GO:0003729 GO:GO:0016568 EMBL:BK006936 GO:GO:0048255 EMBL:X77291
GO:GO:0000932 GO:GO:0008298 GO:GO:0051028 GO:GO:0000784
GO:GO:0007004 EMBL:Z35793 EMBL:AY692814 PIR:S45766
RefSeq:NP_009521.1 ProteinModelPortal:P38199 SMR:P38199
DIP:DIP-3934N IntAct:P38199 MINT:MINT-506819 STRING:P38199
PaxDb:P38199 PeptideAtlas:P38199 EnsemblFungi:YBL032W GeneID:852248
KEGG:sce:YBL032W CYGD:YBL032w eggNOG:NOG294694 OMA:NSHISSI
OrthoDB:EOG4Z65XM NextBio:970814 Genevestigator:P38199
GermOnline:YBL032W Uniprot:P38199
Length = 381
Score = 121 (47.7 bits), Expect = 6.3e-08, Sum P(3) = 6.3e-08
Identities = 21/68 (30%), Positives = 40/68 (58%)
Query: 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAI 185
++L++ +H S+IGK G IK + + G + + D LP S ERI+ + G P +I+ +
Sbjct: 159 VRLIVANSHISSIIGKAGATIKSLINKHGVKIVASKDFLPASDERIIEIQGFPGSITNVL 218
Query: 186 YQICLVLI 193
+I +++
Sbjct: 219 IEISEIIL 226
Score = 57 (25.1 bits), Expect = 6.3e-08, Sum P(3) = 6.3e-08
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAKISITDGA--CPDRI 63
+++ E + +IG G + R+R + KI I++ C DRI
Sbjct: 50 LSLKEAAKIIGTKGSTISRIRAANAVKIGISEKVPGCSDRI 90
Score = 53 (23.7 bits), Expect = 6.3e-08, Sum P(3) = 6.3e-08
Identities = 30/129 (23%), Positives = 54/129 (41%)
Query: 277 KSGGKDTGDDF---VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTESHK-- 331
KS G+ T E+ + + G +IG+ +R+ ++ + I + + K
Sbjct: 245 KSSGEPTSPSTSSNTRIELKIPELYVGAIIGRGMNRIKNLKTFTKTNIVVERKDDDDKDE 304
Query: 332 --KMFHIQG-CQEAVSLAQYLI--NMCIELQKNNTTNTSDNPEPADLDAAISAFMTASVN 386
+ F I + V LA+ ++ N+ E++K N E A+ DA + + S
Sbjct: 305 NFRKFIITSKFPKNVKLAESMLLKNLNTEIEKRE--NYKRKLEAAEGDATVVTERSDSA- 361
Query: 387 SSLIEKPTP 395
S L EK P
Sbjct: 362 SFLEEKEEP 370
>TAIR|locus:2150956 [details] [associations]
symbol:AT5G15270 "AT5G15270" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003723 eggNOG:NOG315872 KO:K13162
EMBL:AK228673 EMBL:AK229313 IPI:IPI00527841 RefSeq:NP_197031.3
RefSeq:NP_851040.1 UniGene:At.31826 ProteinModelPortal:Q0WNX3
SMR:Q0WNX3 PaxDb:Q0WNX3 PRIDE:Q0WNX3 EnsemblPlants:AT5G15270.1
EnsemblPlants:AT5G15270.2 GeneID:831379 KEGG:ath:AT5G15270
TAIR:At5g15270 HOGENOM:HOG000240086 InParanoid:Q0WNX3 OMA:IYSPSDE
PhylomeDB:Q0WNX3 ProtClustDB:CLSN2679973 Genevestigator:Q0WNX3
Uniprot:Q0WNX3
Length = 548
Score = 98 (39.6 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 28/99 (28%), Positives = 52/99 (52%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQV-ASDMLPM---STERIVTVHGNPDTIS 182
+L++P++ G ++GKGG I ++R ++ AN+++ + LP + +V + G D
Sbjct: 373 RLLVPSSRIGCILGKGGAIITEMRRMTKANIRILGKENLPKVASDDDEMVQISGELDVAK 432
Query: 183 QAIYQICLVLIECTLQVVKGAV------IPYEPKTMNAG 215
+A+ QI L + +GAV +PY P +AG
Sbjct: 433 EALIQITSRL-RANVFDREGAVSALMPVLPYVPVAPDAG 470
Score = 93 (37.8 bits), Expect = 6.4e-08, Sum P(3) = 6.4e-08
Identities = 19/72 (26%), Positives = 43/72 (59%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDM-LPM---STERIVTVHGNPDTIS 182
KL++P+ G ++G+GG +++IR +GA +++ D +P+ +++ ++ + G +
Sbjct: 150 KLLVPSDQIGCILGRGGQIVQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVK 209
Query: 183 QAIYQICLVLIE 194
+A+ QI L E
Sbjct: 210 KALLQIASRLHE 221
Score = 77 (32.2 bits), Expect = 6.4e-08, Sum P(3) = 6.4e-08
Identities = 24/71 (33%), Positives = 37/71 (52%)
Query: 2 DGNGDGKI-----DEDTLITMR--CLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISI 54
D NG K D D+L+ R +F V +I +IG GG IV++LR ++ +KI I
Sbjct: 26 DDNGGSKRRYRGDDRDSLVIDRDDTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRI 85
Query: 55 TDG--ACPDRI 63
+ C +R+
Sbjct: 86 GEAIPGCDERV 96
Score = 74 (31.1 bits), Expect = 4.7e-05, Sum P(3) = 4.7e-05
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 2 DGNGDGKIDEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISI 54
D + + + +T + L S ++I C++G GG IV+ +R E+GA+I I
Sbjct: 134 DARSEDSPEGEKQVTAKLLVPS----DQIGCILGRGGQIVQNIRSETGAQIRI 182
Score = 71 (30.1 bits), Expect = 6.4e-08, Sum P(3) = 6.4e-08
Identities = 16/53 (30%), Positives = 31/53 (58%)
Query: 281 KDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTESHKKM 333
+D+G T +++ GC++GK G+ + E+R+++ A I I G E+ K+
Sbjct: 363 RDSGLVSFTTRLLVPSSRIGCILGKGGAIITEMRRMTKANIRI-LGKENLPKV 414
Score = 69 (29.3 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
Identities = 20/77 (25%), Positives = 37/77 (48%)
Query: 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNP---DTIS 182
++LV P + S+IGKGG I +R + A ++V S + ++T+ D S
Sbjct: 286 IRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTE-GNDCLITISAREVFEDAYS 344
Query: 183 QAIYQICLVLIECTLQV 199
I + + +C+ +V
Sbjct: 345 PTIEAVMRLQPKCSDKV 361
Score = 47 (21.6 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 296 DDIAGCVIGKAGSRLLEIRQISGAQINIHTG-TESH 330
++IA VIGK G+ + ++RQ + A I + + TE +
Sbjct: 293 ENIAS-VIGKGGALINQLRQETRATIKVDSSRTEGN 327
>UNIPROTKB|G3V829 [details] [associations]
symbol:Fubp3 "RCG45587" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307004 GO:GO:0003723 EMBL:CH474001
InterPro:IPR015096 Pfam:PF09005 GeneTree:ENSGT00650000093048
EMBL:AC108321 Ensembl:ENSRNOT00000021871 Uniprot:G3V829
Length = 569
Score = 105 (42.0 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 26/67 (38%), Positives = 38/67 (56%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTE---RIVTVHGNPDTI 181
++ +PA CG +IGKGG IK I SGA+V++ + P +T+ RI T+ G P I
Sbjct: 356 EITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNP-PPNTDPNLRIFTIRGAPQQI 414
Query: 182 SQAIYQI 188
A + I
Sbjct: 415 EVARHLI 421
Score = 96 (38.9 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 27/93 (29%), Positives = 51/93 (54%)
Query: 103 CRSLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASD 162
CR+ +H N ++ S +Q +L+IPA+ G +IGKGG IK +++ +G + + D
Sbjct: 148 CRNGPGFH---NDIDGNST--IQ-ELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQD 201
Query: 163 -MLPMSTERIVTVHGNPDTISQAIYQICLVLIE 194
LP ++ + + G+P + QA + ++ E
Sbjct: 202 GPLPTGADKPLRITGDPFKVQQAREMVLEIIRE 234
Score = 87 (35.7 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 280 GKDTGDDFVET-----EIVLT--DDIAGCVIGKAGSRLLEIRQISGAQINIHTG----TE 328
G+ GD V T EI T D G VIGK G + I Q SGA + + T+
Sbjct: 340 GRGRGDWSVGTPGGIQEITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTD 399
Query: 329 SHKKMFHIQGCQEAVSLAQYLIN 351
+ ++F I+G + + +A++LI+
Sbjct: 400 PNLRIFTIRGAPQQIEVARHLID 422
Score = 84 (34.6 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 130 IPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQA 184
+P G +IG+GG +I I+ SG +Q+AS+ + ER + G P++I QA
Sbjct: 84 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIP-ERPCVLTGTPESIEQA 137
Score = 70 (29.7 bits), Expect = 2.6e-05, Sum P(3) = 2.6e-05
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQA 184
+++ +P G +IG+ G IK I++ +G +Q D +S ER V G PD A
Sbjct: 256 IEVSVPRFVVGIVIGRNGEMIKKIQNDAGVRIQFKPDD-GISPERAAQVMGPPDRCQHA 313
Score = 59 (25.8 bits), Expect = 2.6e-05, Sum P(3) = 2.6e-05
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAK-ISITDGACP 60
+ +++ +IG GG +++L++ +G K + I DG P
Sbjct: 169 IPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLP 205
Score = 56 (24.8 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 14 LITMRCLFHSSVNVNE--ISCLIGPGGCIVRRLRKESGAKISITD--GACPDR 62
L+ R + V + + +IG GG + R++ ESG KI I P+R
Sbjct: 71 LVHQRAVITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPER 123
Score = 48 (22.0 bits), Expect = 0.00047, Sum P(4) = 0.00047
Identities = 16/65 (24%), Positives = 29/65 (44%)
Query: 291 EIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQG----CQEAVSL 345
E+ + + G VIG+ G + +I+ +G +I S ++ + G CQ A +
Sbjct: 257 EVSVPRFVVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAARI 316
Query: 346 AQYLI 350
LI
Sbjct: 317 INELI 321
Score = 37 (18.1 bits), Expect = 0.00047, Sum P(4) = 0.00047
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 354 IELQKNNTTNTSDN 367
+ELQ+N NT N
Sbjct: 388 VELQRNPPPNTDPN 401
>RGD|1307004 [details] [associations]
symbol:Fubp3 "far upstream element (FUSE) binding protein 3"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=ISO] [GO:0010628 "positive
regulation of gene expression" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307004 GO:GO:0003723 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 CTD:8939 OrthoDB:EOG4X97H1
EMBL:DQ144645 IPI:IPI00394110 RefSeq:NP_001034426.1
UniGene:Rn.199412 ProteinModelPortal:Q2QC85 SMR:Q2QC85
GeneID:362106 KEGG:rno:362106 UCSC:RGD:1307004 InParanoid:Q2QC85
NextBio:678673 Genevestigator:Q2QC85 Uniprot:Q2QC85
Length = 569
Score = 105 (42.0 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 26/67 (38%), Positives = 38/67 (56%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTE---RIVTVHGNPDTI 181
++ +PA CG +IGKGG IK I SGA+V++ + P +T+ RI T+ G P I
Sbjct: 356 EITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNP-PPNTDPNLRIFTIRGAPQQI 414
Query: 182 SQAIYQI 188
A + I
Sbjct: 415 EVARHLI 421
Score = 96 (38.9 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 27/93 (29%), Positives = 51/93 (54%)
Query: 103 CRSLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASD 162
CR+ +H N ++ S +Q +L+IPA+ G +IGKGG IK +++ +G + + D
Sbjct: 148 CRNGPGFH---NDIDGNST--IQ-ELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQD 201
Query: 163 -MLPMSTERIVTVHGNPDTISQAIYQICLVLIE 194
LP ++ + + G+P + QA + ++ E
Sbjct: 202 GPLPTGADKPLRITGDPFKVQQAREMVLEIIRE 234
Score = 87 (35.7 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 280 GKDTGDDFVET-----EIVLT--DDIAGCVIGKAGSRLLEIRQISGAQINIHTG----TE 328
G+ GD V T EI T D G VIGK G + I Q SGA + + T+
Sbjct: 340 GRGRGDWSVGTPGGIQEITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTD 399
Query: 329 SHKKMFHIQGCQEAVSLAQYLIN 351
+ ++F I+G + + +A++LI+
Sbjct: 400 PNLRIFTIRGAPQQIEVARHLID 422
Score = 84 (34.6 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 130 IPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQA 184
+P G +IG+GG +I I+ SG +Q+AS+ + ER + G P++I QA
Sbjct: 84 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIP-ERPCVLTGTPESIEQA 137
Score = 70 (29.7 bits), Expect = 2.6e-05, Sum P(3) = 2.6e-05
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQA 184
+++ +P G +IG+ G IK I++ +G +Q D +S ER V G PD A
Sbjct: 256 IEVSVPRFVVGIVIGRNGEMIKKIQNGTGVRIQFKPDD-GISPERAAQVMGPPDRCQHA 313
Score = 59 (25.8 bits), Expect = 2.6e-05, Sum P(3) = 2.6e-05
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAK-ISITDGACP 60
+ +++ +IG GG +++L++ +G K + I DG P
Sbjct: 169 IPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLP 205
Score = 56 (24.8 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 14 LITMRCLFHSSVNVNE--ISCLIGPGGCIVRRLRKESGAKISITD--GACPDR 62
L+ R + V + + +IG GG + R++ ESG KI I P+R
Sbjct: 71 LVHQRAVITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPER 123
Score = 47 (21.6 bits), Expect = 0.00058, Sum P(4) = 0.00058
Identities = 16/65 (24%), Positives = 29/65 (44%)
Query: 291 EIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQG----CQEAVSL 345
E+ + + G VIG+ G + +I+ +G +I S ++ + G CQ A +
Sbjct: 257 EVSVPRFVVGIVIGRNGEMIKKIQNGTGVRIQFKPDDGISPERAAQVMGPPDRCQHAARI 316
Query: 346 AQYLI 350
LI
Sbjct: 317 INELI 321
Score = 37 (18.1 bits), Expect = 0.00058, Sum P(4) = 0.00058
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 354 IELQKNNTTNTSDN 367
+ELQ+N NT N
Sbjct: 388 VELQRNPPPNTDPN 401
>UNIPROTKB|E1B8C6 [details] [associations]
symbol:E1B8C6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:DAAA02008155
IPI:IPI00701183 Ensembl:ENSBTAT00000038517 OMA:YLINARE
Uniprot:E1B8C6
Length = 116
Score = 128 (50.1 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 28/69 (40%), Positives = 43/69 (62%)
Query: 291 EIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQGCQEAVSLAQYL 349
E+ + +++ GC+IG+ G+ + EIRQ+S AQI I E S + I G ++SLAQYL
Sbjct: 43 ELTIPNNLIGCIIGRQGANINEIRQMSRAQIKIANPVEGSSGRQVTITGSAASISLAQYL 102
Query: 350 INMCIELQK 358
IN + +K
Sbjct: 103 INARLSSEK 111
>UNIPROTKB|F1S0X8 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0006351 GO:GO:0003723
GeneTree:ENSGT00650000093048 OMA:AAPHQNT EMBL:CU914779
Ensembl:ENSSSCT00000006271 Uniprot:F1S0X8
Length = 548
Score = 103 (41.3 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 25/67 (37%), Positives = 38/67 (56%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTE---RIVTVHGNPDTI 181
++ +PA CG +IGKGG IK I SGA+V++ + P +T+ R+ T+ G P I
Sbjct: 356 EITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNP-PPNTDPGLRVFTIRGVPQQI 414
Query: 182 SQAIYQI 188
A + I
Sbjct: 415 EVARHLI 421
Score = 98 (39.6 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 27/93 (29%), Positives = 51/93 (54%)
Query: 103 CRSLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASD 162
CR+ +H N ++ S +Q +L+IPA+ G +IGKGG IK +++ +G + + D
Sbjct: 148 CRNGPGFH---NDVDGSST--IQ-ELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQD 201
Query: 163 -MLPMSTERIVTVHGNPDTISQAIYQICLVLIE 194
LP ++ + + G+P + QA + ++ E
Sbjct: 202 GPLPTGADKPLRITGDPFKVQQAREMVLEIIRE 234
Score = 84 (34.6 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 130 IPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQA 184
+P G +IG+GG +I I+ SG +Q+AS+ + ER + G P++I QA
Sbjct: 84 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIP-ERPCVLTGTPESIEQA 137
Score = 83 (34.3 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 27/83 (32%), Positives = 41/83 (49%)
Query: 280 GKDTGDDFVET-----EIVLT--DDIAGCVIGKAGSRLLEIRQISGAQINIHTG----TE 328
G+ GD V T EI T D G VIGK G + I Q SGA + + T+
Sbjct: 340 GRGRGDWSVGTPGGIQEITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTD 399
Query: 329 SHKKMFHIQGCQEAVSLAQYLIN 351
++F I+G + + +A++LI+
Sbjct: 400 PGLRVFTIRGVPQQIEVARHLID 422
Score = 75 (31.5 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAI 185
+++ +P G +IG+ G IK I++ +G +Q D +S ER V G PD A
Sbjct: 256 IEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD-GISPERAAQVMGPPDRCQHAA 314
Query: 186 YQIC-LVL 192
+ I L+L
Sbjct: 315 HVISELIL 322
Score = 61 (26.5 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 4 NGDG-KIDEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAK-ISITDGACP 60
NG G D D T++ L + +++ +IG GG +++L++ +G K + I DG P
Sbjct: 150 NGPGFHNDVDGSSTIQELL---IPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLP 205
Score = 56 (24.8 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 14 LITMRCLFHSSVNVNE--ISCLIGPGGCIVRRLRKESGAKISITD--GACPDR 62
L+ R + V + + +IG GG + R++ ESG KI I P+R
Sbjct: 71 LVHQRAVITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPER 123
>TAIR|locus:2017612 [details] [associations]
symbol:AT1G51580 "AT1G51580" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC025294
EMBL:AC024261 GO:GO:0003723 UniGene:At.37784 eggNOG:NOG285495
UniGene:At.66909 KO:K13162 EMBL:BT008776 EMBL:AK227874
IPI:IPI00539866 PIR:D96554 RefSeq:NP_175569.1
ProteinModelPortal:Q9C553 SMR:Q9C553 IntAct:Q9C553 PaxDb:Q9C553
PRIDE:Q9C553 EnsemblPlants:AT1G51580.1 GeneID:841583
KEGG:ath:AT1G51580 TAIR:At1g51580 HOGENOM:HOG000077702
InParanoid:Q9C553 OMA:PGFDRPP PhylomeDB:Q9C553
ProtClustDB:CLSN2679414 Genevestigator:Q9C553 Uniprot:Q9C553
Length = 621
Score = 102 (41.0 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 18/53 (33%), Positives = 35/53 (66%)
Query: 122 QPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTV 174
+ + +L+ PAT G++IGKGG I+ ++ ++G+ ++V D+ S ER+V +
Sbjct: 17 ESVHFRLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVPSEERVVLI 69
Score = 97 (39.2 bits), Expect = 2.9e-06, Sum P(3) = 2.9e-06
Identities = 21/53 (39%), Positives = 35/53 (66%)
Query: 122 QPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTV 174
+ + +L+ PA GSLIGKGG ++ +++ SGA+++V SD S ERI+ +
Sbjct: 274 EEVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKV-SDPTHDSEERIIVI 325
Score = 95 (38.5 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQV-ASDMLPM---STERIVTVHGNPDTIS 182
+L++ + + G L+GKGG I ++R +GA+++V A D + IV V GN T+
Sbjct: 363 RLLVHSPYIGRLLGKGGHLISEMRRATGASIRVFAKDQATKYESQHDEIVQVIGNLKTVQ 422
Query: 183 QAIYQICLVLIE 194
A++QI L E
Sbjct: 423 DALFQILCRLRE 434
Score = 78 (32.5 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 28 NEISCLIGPGGCIVRRLRKESGAKISITD 56
+++ LIG GG +VR L+ ESGA I ++D
Sbjct: 285 DKVGSLIGKGGAVVRALQNESGASIKVSD 313
Score = 66 (28.3 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 291 EIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIH---TGTESHKKMFHIQGCQEAVSLAQ 347
EIV+ G V G+ S L I+Q+SGA + +H GT + + + G + AQ
Sbjct: 552 EIVIPQAYLGHVYGENCSNLNYIKQVSGANVVVHDPKAGTT--EGLVVVSGTSDQAHFAQ 609
Query: 348 YLINMCI 354
L++ I
Sbjct: 610 SLLHAFI 616
Score = 63 (27.2 bits), Expect = 2.9e-06, Sum P(3) = 2.9e-06
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGA--KISITDGACP 60
V N++ L+ GG +++++R++SGA +IS TD P
Sbjct: 154 VRGNQVDYLMSKGGKMIQKIREDSGAIVRISSTDQIPP 191
Score = 60 (26.2 bits), Expect = 5.7e-06, Sum P(3) = 5.7e-06
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 33 LIGPGGCIVRRLRKESGAKISITD 56
+IG GG ++R L+ +G+KI + D
Sbjct: 33 IIGKGGSVIRHLQSVTGSKIRVID 56
Score = 52 (23.4 bits), Expect = 7.0e-05, Sum P(3) = 7.0e-05
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTESHK 331
V +++ G ++GK G + E+R+ +GA I + ++ K
Sbjct: 360 VVARLLVHSPYIGRLLGKGGHLISEMRRATGASIRVFAKDQATK 403
>WB|WBGene00016489 [details] [associations]
symbol:C36E6.1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 eggNOG:NOG300923 InterPro:IPR015096
Pfam:PF09005 GeneTree:ENSGT00650000093048 HSSP:Q96AE4 EMBL:FO080802
GeneID:181773 KEGG:cel:CELE_C36E6.1 CTD:181773 HOGENOM:HOG000018892
RefSeq:NP_510825.1 ProteinModelPortal:Q9BLA0 SMR:Q9BLA0
STRING:Q9BLA0 PaxDb:Q9BLA0 PRIDE:Q9BLA0 EnsemblMetazoa:C36E6.1b
UCSC:C36E6.1a WormBase:C36E6.1b InParanoid:Q9BLA0 OMA:IQLIQEN
NextBio:915282 ArrayExpress:Q9BLA0 Uniprot:Q9BLA0
Length = 641
Score = 109 (43.4 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 20/63 (31%), Positives = 37/63 (58%)
Query: 121 PQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDT 180
P + +++ IPA CG++IGKGG +++ +R + NVQ+ D T + + + G+P
Sbjct: 154 PSKITIEIPIPANKCGAIIGKGGEQMRKLRSWTNCNVQLLQDNNIADTVKPLKITGDPKQ 213
Query: 181 ISQ 183
+ Q
Sbjct: 214 VEQ 216
Score = 89 (36.4 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 124 LQLKLVIPATH-C-GSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTE-RIVTVHGNPDT 180
L +K+ +P C G +IG+ G +++ I SG VQV + P ST R+V ++G P+
Sbjct: 53 LIVKVAVPVPEQCVGLVIGRNGAEVQAISQKSGCRVQVT--VQPSSTGFRLVEIYGIPEN 110
Query: 181 ISQAIYQICLVLIECTLQ 198
I +A I V+ T Q
Sbjct: 111 IERAKAYISEVVTRGTRQ 128
Score = 85 (35.0 bits), Expect = 8.0e-05, Sum P(3) = 8.0e-05
Identities = 24/102 (23%), Positives = 45/102 (44%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQ 183
+ L++ +P G+++G G IK + D +G +Q D P ER + + GN + +
Sbjct: 246 MSLQVKVPRCTVGAIMGLQGKNIKKLSDETGTKIQFLPDDDPKLMERSLAIIGNKNKV-Y 304
Query: 184 AIYQICLVLIECTLQVVKGAVIPYEP--KTMNAGPVILSGGQ 223
Q+ ++E + V+ + G VI GG+
Sbjct: 305 VCAQLIKAIVEANSEAANAPVVLFYMVIPASKCGLVIGRGGE 346
Score = 83 (34.3 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 23/82 (28%), Positives = 42/82 (51%)
Query: 292 IVLTDDIAGCVIGKAGSRLLEIRQISGA--QINIHTGTESHKKMFHIQGCQEAVSLAQYL 349
+V+ G VIG+ G + +I Q SGA +++ T +K F I+G + V A++L
Sbjct: 330 MVIPASKCGLVIGRGGETIKQINQESGAHCELSRDPNTNPIEKTFVIRGSEAQVEHAKHL 389
Query: 350 INMCI-ELQKNNTTNTSDNPEP 370
I + + ++ N + P+P
Sbjct: 390 IRVKVGDIPPNTPYTPAGMPQP 411
Score = 45 (20.9 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 12/50 (24%), Positives = 26/50 (52%)
Query: 6 DGKIDEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISIT 55
D ++D++ LI + V + +IG G V+ + ++SG ++ +T
Sbjct: 45 DHRMDQNGLIVKVAV---PVPEQCVGLVIGRNGAEVQAISQKSGCRVQVT 91
Score = 43 (20.2 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAKISI 54
+ N+ +IG GG +R+LR + + +
Sbjct: 163 IPANKCGAIIGKGGEQMRKLRSWTNCNVQL 192
>UNIPROTKB|J9P1I9 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00650000093048
EMBL:AAEX03006837 EMBL:AAEX03006838 Ensembl:ENSCAFT00000048747
Uniprot:J9P1I9
Length = 487
Score = 105 (42.0 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 26/67 (38%), Positives = 38/67 (56%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTE---RIVTVHGNPDTI 181
++ +PA CG +IGKGG IK I SGA+V++ + P +T+ RI T+ G P I
Sbjct: 356 EITYTVPADKCGLVIGKGGDNIKSINQQSGAHVELQRNP-PPNTDPNLRIFTIRGIPQQI 414
Query: 182 SQAIYQI 188
A + I
Sbjct: 415 EVARHLI 421
Score = 94 (38.1 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 26/93 (27%), Positives = 51/93 (54%)
Query: 103 CRSLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASD 162
CR+ +H N ++ S +Q +++IPA+ G +IGKGG IK +++ +G + + D
Sbjct: 148 CRNGPGFH---NDIDGNST--IQ-EILIPASKVGLVIGKGGETIKQLQERTGVKMVMIQD 201
Query: 163 -MLPMSTERIVTVHGNPDTISQAIYQICLVLIE 194
LP ++ + + G+P + QA + ++ E
Sbjct: 202 GPLPTGADKPLRITGDPFKVQQAREMVLEIIRE 234
Score = 84 (34.6 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 297 DIAGCVIGKAGSRLLEIRQISGAQINIHTG----TESHKKMFHIQGCQEAVSLAQYLIN 351
D G VIGK G + I Q SGA + + T+ + ++F I+G + + +A++LI+
Sbjct: 364 DKCGLVIGKGGDNIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRGIPQQIEVARHLID 422
Score = 84 (34.6 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 130 IPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQA 184
+P G +IG+GG +I I+ SG +Q+AS+ + ER + G P++I QA
Sbjct: 84 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIP-ERPCVLTGTPESIEQA 137
Score = 74 (31.1 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAI 185
+++ +P G +IG+ G IK I++ +G +Q D +S ER V G PD A
Sbjct: 256 IEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD-GISPERAAQVMGPPDRCQHAA 314
Query: 186 YQI 188
+ I
Sbjct: 315 HVI 317
Score = 59 (25.8 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAK-ISITDGACP 60
+ +++ +IG GG +++L++ +G K + I DG P
Sbjct: 169 IPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLP 205
Score = 56 (24.8 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 14 LITMRCLFHSSVNVNE--ISCLIGPGGCIVRRLRKESGAKISITD--GACPDR 62
L+ R + V + + +IG GG + R++ ESG KI I P+R
Sbjct: 71 LVHQRAVITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPER 123
Score = 45 (20.9 bits), Expect = 0.00071, Sum P(4) = 0.00071
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 300 GCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQGCQEAVSLAQYLINMCI 354
G VIG+ G + +I+ +G +I S ++ + G + A ++IN I
Sbjct: 266 GIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHVINELI 321
Score = 37 (18.1 bits), Expect = 0.00071, Sum P(4) = 0.00071
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 354 IELQKNNTTNTSDN 367
+ELQ+N NT N
Sbjct: 388 VELQRNPPPNTDPN 401
>UNIPROTKB|H3BND9 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 GO:GO:0003723
EMBL:AC068889 EMBL:AC023509 HGNC:HGNC:8648 ChiTaRS:PCBP2
Ensembl:ENST00000550585 Uniprot:H3BND9
Length = 112
Score = 126 (49.4 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 24/45 (53%), Positives = 31/45 (68%)
Query: 107 EDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRD 151
ED + S P+ L+LV+PA+ CGSLIGKGGCKIK+IR+
Sbjct: 21 EDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 65
>UNIPROTKB|F1PEW1 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00650000093048
OMA:AAPHQNT EMBL:AAEX03006837 EMBL:AAEX03006838
Ensembl:ENSCAFT00000031728 Uniprot:F1PEW1
Length = 547
Score = 105 (42.0 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 26/67 (38%), Positives = 38/67 (56%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTE---RIVTVHGNPDTI 181
++ +PA CG +IGKGG IK I SGA+V++ + P +T+ RI T+ G P I
Sbjct: 356 EITYTVPADKCGLVIGKGGDNIKSINQQSGAHVELQRNP-PPNTDPNLRIFTIRGIPQQI 414
Query: 182 SQAIYQI 188
A + I
Sbjct: 415 EVARHLI 421
Score = 94 (38.1 bits), Expect = 3.1e-07, Sum P(3) = 3.1e-07
Identities = 26/93 (27%), Positives = 51/93 (54%)
Query: 103 CRSLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASD 162
CR+ +H N ++ S +Q +++IPA+ G +IGKGG IK +++ +G + + D
Sbjct: 148 CRNGPGFH---NDIDGNST--IQ-EILIPASKVGLVIGKGGETIKQLQERTGVKMVMIQD 201
Query: 163 -MLPMSTERIVTVHGNPDTISQAIYQICLVLIE 194
LP ++ + + G+P + QA + ++ E
Sbjct: 202 GPLPTGADKPLRITGDPFKVQQAREMVLEIIRE 234
Score = 84 (34.6 bits), Expect = 3.1e-07, Sum P(3) = 3.1e-07
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 297 DIAGCVIGKAGSRLLEIRQISGAQINIHTG----TESHKKMFHIQGCQEAVSLAQYLIN 351
D G VIGK G + I Q SGA + + T+ + ++F I+G + + +A++LI+
Sbjct: 364 DKCGLVIGKGGDNIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRGIPQQIEVARHLID 422
Score = 84 (34.6 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 130 IPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQA 184
+P G +IG+GG +I I+ SG +Q+AS+ + ER + G P++I QA
Sbjct: 84 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIP-ERPCVLTGTPESIEQA 137
Score = 74 (31.1 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAI 185
+++ +P G +IG+ G IK I++ +G +Q D +S ER V G PD A
Sbjct: 256 IEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD-GISPERAAQVMGPPDRCQHAA 314
Query: 186 YQI 188
+ I
Sbjct: 315 HVI 317
Score = 59 (25.8 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAK-ISITDGACP 60
+ +++ +IG GG +++L++ +G K + I DG P
Sbjct: 169 IPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLP 205
Score = 56 (24.8 bits), Expect = 3.1e-07, Sum P(3) = 3.1e-07
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 14 LITMRCLFHSSVNVNE--ISCLIGPGGCIVRRLRKESGAKISITD--GACPDR 62
L+ R + V + + +IG GG + R++ ESG KI I P+R
Sbjct: 71 LVHQRAVITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPER 123
>ZFIN|ZDB-GENE-040426-2159 [details] [associations]
symbol:fubp1 "far upstream element (FUSE) binding
protein 1" species:7955 "Danio rerio" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-040426-2159 GO:GO:0003723 CTD:8880 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210 OrthoDB:EOG4STS4G
InterPro:IPR015096 Pfam:PF09005 GeneTree:ENSGT00650000093048
OMA:NGQEGDQ EMBL:CT027589 EMBL:BC064649 IPI:IPI00484709
RefSeq:NP_998309.1 UniGene:Dr.76240 SMR:Q6P2A9
Ensembl:ENSDART00000081442 Ensembl:ENSDART00000128153 GeneID:406418
KEGG:dre:406418 InParanoid:Q6P2A9 NextBio:20818020 Uniprot:Q6P2A9
Length = 642
Score = 97 (39.2 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 29/107 (27%), Positives = 54/107 (50%)
Query: 81 GYPGHTLWVT-SVDNVCTAYNFMCRSLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLI 139
G P ++ +T S D + TA + +E + N P +++IPA+ G +I
Sbjct: 131 GMPDRSVTLTGSPDAIMTAKRLLSEIVEKGRPSPAFHHNDGPGMSVHEMMIPASKAGLVI 190
Query: 140 GKGGCKIKDIRDLSGANVQVASDMLPMST--ERIVTVHGNPDTISQA 184
GKGG IK +++ +G + + D P +T ++ + + G+P + QA
Sbjct: 191 GKGGETIKQLQERAGVKMVMIQDG-PQNTGADKPLRISGDPFKVQQA 236
Score = 93 (37.8 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 121 PQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDT 180
P+ + + +P G +IG+GG +I ++ SG +Q+A D M +R VT+ G+PD
Sbjct: 87 PRSVSEEFKVPDGMVGFIIGRGGEQISRLQQESGCKIQIAPDSGGMP-DRSVTLTGSPDA 145
Query: 181 ISQA 184
I A
Sbjct: 146 IMTA 149
Score = 70 (29.7 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 300 GCVIGKAGSRLLEIRQISGAQINIHTG----TESHKKMFHIQGCQEAVSLAQYLI 350
G +IGK G + I Q SGA+I + ++ + K+F ++G + + A+ L+
Sbjct: 387 GLIIGKGGETIKNISQQSGARIELQRNPPPNSDPNIKIFTVRGSPQQIDYARQLV 441
Score = 70 (29.7 bits), Expect = 0.00027, Sum P(3) = 0.00027
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQA 184
L + +P G +IG+ G IK I++ +G +Q D + ERI + G PD A
Sbjct: 270 LDVPVPRFAVGIVIGRSGEMIKKIQNDTGVRIQFKPDD-GSTPERIAQIMGPPDRAQHA 327
Score = 69 (29.3 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 30 ISCLIGPGGCIVRRLRKESGAKISIT--DGACPDR 62
+ +IG GG + RL++ESG KI I G PDR
Sbjct: 101 VGFIIGRGGEQISRLQQESGCKIQIAPDSGGMPDR 135
Score = 44 (20.5 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 11/45 (24%), Positives = 24/45 (53%)
Query: 277 KSGGKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQI 321
++GG G + ++ + G VIG++G + +I+ +G +I
Sbjct: 259 RAGGGGGGGESLDVPVPRF--AVGIVIGRSGEMIKKIQNDTGVRI 301
>ZFIN|ZDB-GENE-041121-12 [details] [associations]
symbol:zgc:101598 "zgc:101598" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-041121-12 GO:GO:0003723
eggNOG:NOG300923 HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 OrthoDB:EOG4X97H1 EMBL:BC085379
IPI:IPI00487369 RefSeq:NP_001007777.1 UniGene:Dr.76973
ProteinModelPortal:Q5RKQ3 SMR:Q5RKQ3 STRING:Q5RKQ3 GeneID:493616
KEGG:dre:493616 InParanoid:Q5RKQ3 NextBio:20865427
ArrayExpress:Q5RKQ3 Uniprot:Q5RKQ3
Length = 572
Score = 103 (41.3 bits), Expect = 4.7e-07, Sum P(3) = 4.7e-07
Identities = 24/83 (28%), Positives = 49/83 (59%)
Query: 103 CRSLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGAN-VQVAS 161
CR+ +H ++M+ S +Q +++IPA+ G +IGKGG IK +++ +G + +
Sbjct: 154 CRNGPGFH---SQMDGSSA--VQ-EILIPASKVGLVIGKGGDTIKQLQERTGVKMIMIQD 207
Query: 162 DMLPMSTERIVTVHGNPDTISQA 184
D +P +++ + + G+P + QA
Sbjct: 208 DPMPTGSDKPLRISGDPYKVQQA 230
Score = 80 (33.2 bits), Expect = 4.7e-07, Sum P(3) = 4.7e-07
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 289 ETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTG----TESHKKMFHIQGCQEAVS 344
E + D G VIGK G + I Q SGA + + T+ + + F I+G + +
Sbjct: 361 EVTYTIPADKCGLVIGKGGETIKNINQQSGAHVELQRNPPPNTDPNVRTFSIRGSPQQME 420
Query: 345 LAQYLIN 351
+A+ LI+
Sbjct: 421 MARQLID 427
Score = 78 (32.5 bits), Expect = 7.6e-05, Sum P(3) = 7.6e-05
Identities = 25/90 (27%), Positives = 43/90 (47%)
Query: 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAI 185
+ + +P G +IG+ G IK I++ +G +Q D +S +R+ V G P+ A+
Sbjct: 261 IDVAVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD-GISPDRVAQVMGQPERCQHAV 319
Query: 186 YQICLVLIECTLQVVKGAVIPYEPKTMNAG 215
+ I L++ T Q G P P+ G
Sbjct: 320 HLIN-ELVQ-TAQERDGFGGPLGPRGRGRG 347
Score = 57 (25.1 bits), Expect = 5.5e-05, Sum P(4) = 5.5e-05
Identities = 19/81 (23%), Positives = 36/81 (44%)
Query: 277 KSGGKDTGDDFVET-EIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMF 334
+SG D G + ++ + G VIG+ G + +I+ +G +I S ++
Sbjct: 247 RSGRSDFGSRLGSSIDVAVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPDRVA 306
Query: 335 HIQGCQEAVSLAQYLINMCIE 355
+ G E A +LIN ++
Sbjct: 307 QVMGQPERCQHAVHLINELVQ 327
Score = 54 (24.1 bits), Expect = 7.6e-05, Sum P(3) = 7.6e-05
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAK-ISITDGACP 60
+ +++ +IG GG +++L++ +G K I I D P
Sbjct: 175 IPASKVGLVIGKGGDTIKQLQERTGVKMIMIQDDPMP 211
Score = 49 (22.3 bits), Expect = 4.7e-07, Sum P(3) = 4.7e-07
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 30 ISCLIGPGGCIVRRLRKESGAKISIT--DGACPDR 62
+ +IG GG + R++ ES KI I G DR
Sbjct: 95 VGFIIGRGGEQITRIQLESNCKIQIAADSGGMMDR 129
Score = 37 (18.1 bits), Expect = 5.5e-05, Sum P(4) = 5.5e-05
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 354 IELQKNNTTNTSDN 367
+ELQ+N NT N
Sbjct: 393 VELQRNPPPNTDPN 406
>TAIR|locus:2056951 [details] [associations]
symbol:AT2G03110 "AT2G03110" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
EMBL:BT012113 EMBL:BT012369 IPI:IPI00542292 RefSeq:NP_178410.2
UniGene:At.23438 ProteinModelPortal:Q6NLG5 SMR:Q6NLG5
EnsemblPlants:AT2G03110.1 GeneID:814840 KEGG:ath:AT2G03110
TAIR:At2g03110 InParanoid:Q6NLG5 PhylomeDB:Q6NLG5
Genevestigator:Q6NLG5 Uniprot:Q6NLG5
Length = 153
Score = 122 (48.0 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 27/91 (29%), Positives = 54/91 (59%)
Query: 107 EDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPM 166
+DY+ N E + + +++++P+ G LIGKGG I+ +R+ + A ++V +D LPM
Sbjct: 58 DDYNDNDEYSEGQTV--VTVRMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIRVRNDNLPM 115
Query: 167 -----STERIVTVHGNPDTISQAIYQICLVL 192
S + ++ + G+P + +A+YQ+ +L
Sbjct: 116 CALALSHDELLQIIGDPSAVREALYQVAFLL 146
>UNIPROTKB|F1NYJ3 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 EMBL:AADN02026565
EMBL:AADN02026566 EMBL:AADN02026567 EMBL:AADN02026568
EMBL:AADN02026569 EMBL:AADN02026570 IPI:IPI00819889
Ensembl:ENSGALT00000006277 ArrayExpress:F1NYJ3 Uniprot:F1NYJ3
Length = 508
Score = 104 (41.7 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 26/67 (38%), Positives = 38/67 (56%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTE---RIVTVHGNPDTI 181
++ +PA CG +IGKGG IK I SGA+V++ + P +T+ RI T+ G P I
Sbjct: 345 EITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNP-PPNTDPGVRIFTIRGVPQQI 403
Query: 182 SQAIYQI 188
A + I
Sbjct: 404 ELARHLI 410
Score = 86 (35.3 bits), Expect = 7.2e-07, Sum P(3) = 7.2e-07
Identities = 28/83 (33%), Positives = 41/83 (49%)
Query: 280 GKDTGDDFVET-----EIVLT--DDIAGCVIGKAGSRLLEIRQISGAQINIHTG----TE 328
G+ GD V T EI T D G VIGK G + I Q SGA + + T+
Sbjct: 329 GRGRGDWSVGTPGGMQEITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTD 388
Query: 329 SHKKMFHIQGCQEAVSLAQYLIN 351
++F I+G + + LA++LI+
Sbjct: 389 PGVRIFTIRGVPQQIELARHLID 411
Score = 84 (34.6 bits), Expect = 7.2e-07, Sum P(3) = 7.2e-07
Identities = 37/156 (23%), Positives = 73/156 (46%)
Query: 103 CRSLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASD 162
CR+ +H N ++ S +Q +++IPA+ G +IGKGG IK +++ +G + + D
Sbjct: 137 CRNGPGFH---NDVDGNST--IQ-EILIPASKVGLVIGKGGETIKQLQERTGVKMIMIQD 190
Query: 163 -MLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSG 221
+P ++ + + G+ + QA + ++ E +G + + M G + +S
Sbjct: 191 GPMPTGADKPLRITGDAFKVQQAREMVLEIIREKDQADFRGVRNDFSSR-MGGGSIEVSV 249
Query: 222 -----GQAYTLHGEYAVPVQEVAGKK-QPHPLAGLA 251
G +GE +Q AG + Q P G++
Sbjct: 250 PRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGIS 285
Score = 84 (34.6 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 130 IPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQA 184
+P G +IG+GG +I I+ SG +Q+A D M ER + G P++I QA
Sbjct: 73 VPDKMVGFIIGRGGEQISRIQIESGCKIQIAPDSGGMP-ERPCVLTGTPESIEQA 126
Score = 77 (32.2 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAI 185
+++ +P G +IG+ G IK I++ +G +Q D +S ER+ V G PD A
Sbjct: 245 IEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD-GISPERVAQVMGLPDRCQHAA 303
Query: 186 YQIC-LVL 192
+ I L+L
Sbjct: 304 HIISELIL 311
Score = 60 (26.2 bits), Expect = 7.2e-07, Sum P(3) = 7.2e-07
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 14 LITMRCLFHSSVNVNE--ISCLIGPGGCIVRRLRKESGAKISIT--DGACPDR 62
L+ R + V + + +IG GG + R++ ESG KI I G P+R
Sbjct: 60 LVHQRAVITEDFKVPDKMVGFIIGRGGEQISRIQIESGCKIQIAPDSGGMPER 112
Score = 60 (26.2 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAK-ISITDGACP 60
+ +++ +IG GG +++L++ +G K I I DG P
Sbjct: 158 IPASKVGLVIGKGGETIKQLQERTGVKMIMIQDGPMP 194
>UNIPROTKB|F1NGC0 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0006351 GO:GO:0003723
GeneTree:ENSGT00650000093048 OMA:AAPHQNT EMBL:AADN02026565
EMBL:AADN02026566 EMBL:AADN02026567 EMBL:AADN02026568
EMBL:AADN02026569 EMBL:AADN02026570 IPI:IPI00578263
Ensembl:ENSGALT00000039554 ArrayExpress:F1NGC0 Uniprot:F1NGC0
Length = 539
Score = 104 (41.7 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 26/67 (38%), Positives = 38/67 (56%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTE---RIVTVHGNPDTI 181
++ +PA CG +IGKGG IK I SGA+V++ + P +T+ RI T+ G P I
Sbjct: 374 EITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNP-PPNTDPGVRIFTIRGVPQQI 432
Query: 182 SQAIYQI 188
A + I
Sbjct: 433 ELARHLI 439
Score = 86 (35.3 bits), Expect = 8.9e-07, Sum P(3) = 8.9e-07
Identities = 28/83 (33%), Positives = 41/83 (49%)
Query: 280 GKDTGDDFVET-----EIVLT--DDIAGCVIGKAGSRLLEIRQISGAQINIHTG----TE 328
G+ GD V T EI T D G VIGK G + I Q SGA + + T+
Sbjct: 358 GRGRGDWSVGTPGGMQEITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTD 417
Query: 329 SHKKMFHIQGCQEAVSLAQYLIN 351
++F I+G + + LA++LI+
Sbjct: 418 PGVRIFTIRGVPQQIELARHLID 440
Score = 84 (34.6 bits), Expect = 8.9e-07, Sum P(3) = 8.9e-07
Identities = 37/156 (23%), Positives = 73/156 (46%)
Query: 103 CRSLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASD 162
CR+ +H N ++ S +Q +++IPA+ G +IGKGG IK +++ +G + + D
Sbjct: 166 CRNGPGFH---NDVDGNST--IQ-EILIPASKVGLVIGKGGETIKQLQERTGVKMIMIQD 219
Query: 163 -MLPMSTERIVTVHGNPDTISQAIYQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSG 221
+P ++ + + G+ + QA + ++ E +G + + M G + +S
Sbjct: 220 GPMPTGADKPLRITGDAFKVQQAREMVLEIIREKDQADFRGVRNDFSSR-MGGGSIEVSV 278
Query: 222 -----GQAYTLHGEYAVPVQEVAGKK-QPHPLAGLA 251
G +GE +Q AG + Q P G++
Sbjct: 279 PRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGIS 314
Score = 84 (34.6 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 130 IPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQA 184
+P G +IG+GG +I I+ SG +Q+A D M ER + G P++I QA
Sbjct: 102 VPDKMVGFIIGRGGEQISRIQIESGCKIQIAPDSGGMP-ERPCVLTGTPESIEQA 155
Score = 77 (32.2 bits), Expect = 4.4e-06, Sum P(3) = 4.4e-06
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAI 185
+++ +P G +IG+ G IK I++ +G +Q D +S ER+ V G PD A
Sbjct: 274 IEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD-GISPERVAQVMGLPDRCQHAA 332
Query: 186 YQIC-LVL 192
+ I L+L
Sbjct: 333 HIISELIL 340
Score = 60 (26.2 bits), Expect = 8.9e-07, Sum P(3) = 8.9e-07
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 14 LITMRCLFHSSVNVNE--ISCLIGPGGCIVRRLRKESGAKISIT--DGACPDR 62
L+ R + V + + +IG GG + R++ ESG KI I G P+R
Sbjct: 89 LVHQRAVITEDFKVPDKMVGFIIGRGGEQISRIQIESGCKIQIAPDSGGMPER 141
Score = 60 (26.2 bits), Expect = 4.4e-06, Sum P(3) = 4.4e-06
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAK-ISITDGACP 60
+ +++ +IG GG +++L++ +G K I I DG P
Sbjct: 187 IPASKVGLVIGKGGETIKQLQERTGVKMIMIQDGPMP 223
>UNIPROTKB|A6QP83 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0006351 GO:GO:0003723 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
GeneTree:ENSGT00650000093048 CTD:8939 OMA:AAPHQNT OrthoDB:EOG4X97H1
EMBL:DAAA02032235 EMBL:DAAA02032236 EMBL:BC149198 IPI:IPI00714784
RefSeq:NP_001094687.1 UniGene:Bt.2190 SMR:A6QP83
Ensembl:ENSBTAT00000017383 GeneID:541080 KEGG:bta:541080
InParanoid:A6QP83 NextBio:20878996 Uniprot:A6QP83
Length = 572
Score = 105 (42.0 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 27/67 (40%), Positives = 38/67 (56%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTE---RIVTVHGNPDTI 181
++ +PA CG +IGKGG IK I SGA+V++ + P ST+ RI T+ G P I
Sbjct: 356 EVTYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNP-PPSTDPNLRIFTIRGLPPQI 414
Query: 182 SQAIYQI 188
A + I
Sbjct: 415 EVARHLI 421
Score = 90 (36.7 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 20/69 (28%), Positives = 39/69 (56%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASD-MLPMSTERIVTVHGNPDTISQAI 185
++ IPA+ G +IGKGG IK +++ +G + + D LP ++ + + G+P + QA
Sbjct: 166 EIPIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDPFKVQQAR 225
Query: 186 YQICLVLIE 194
+ ++ E
Sbjct: 226 EMVLEIIRE 234
Score = 84 (34.6 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 130 IPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQA 184
+P G +IG+GG +I I+ SG +Q+AS+ + ER + G P++I QA
Sbjct: 84 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIP-ERPCVLTGTPESIEQA 137
Score = 82 (33.9 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 289 ETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTG----TESHKKMFHIQGCQEAVS 344
E + D G VIGK G + I Q SGA + + T+ + ++F I+G +
Sbjct: 356 EVTYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPSTDPNLRIFTIRGLPPQIE 415
Query: 345 LAQYLIN 351
+A++LI+
Sbjct: 416 VARHLID 422
Score = 75 (31.5 bits), Expect = 2.9e-05, Sum P(3) = 2.9e-05
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAI 185
+++ +P G +IG+ G IK I++ +G +Q D +S ER V G PD A
Sbjct: 256 IEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD-GISPERAAQVMGPPDRCQHAA 314
Query: 186 YQIC-LVL 192
+ I L+L
Sbjct: 315 HVISELIL 322
Score = 59 (25.8 bits), Expect = 2.9e-05, Sum P(3) = 2.9e-05
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAK-ISITDGACP 60
+ +++ +IG GG +++L++ +G K + I DG P
Sbjct: 169 IPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLP 205
Score = 56 (24.8 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 14 LITMRCLFHSSVNVNE--ISCLIGPGGCIVRRLRKESGAKISITD--GACPDR 62
L+ R + V + + +IG GG + R++ ESG KI I P+R
Sbjct: 71 LVHQRAVITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPER 123
>TAIR|locus:2084908 [details] [associations]
symbol:FLK "AT3G04610" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0009911
"positive regulation of flower development" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 EMBL:CP002686 GO:GO:0003723
GO:GO:0009911 EMBL:AC011437 KO:K13162 HSSP:Q9UNW9 EMBL:AY070475
IPI:IPI00521688 RefSeq:NP_187112.1 UniGene:At.28392
ProteinModelPortal:Q9SR13 SMR:Q9SR13 STRING:Q9SR13 PRIDE:Q9SR13
ProMEX:Q9SR13 EnsemblPlants:AT3G04610.1 GeneID:819619
KEGG:ath:AT3G04610 TAIR:At3g04610 InParanoid:Q9SR13 OMA:LEPQQYE
PhylomeDB:Q9SR13 ProtClustDB:CLSN2914698 Genevestigator:Q9SR13
Uniprot:Q9SR13
Length = 577
Score = 110 (43.8 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
Identities = 30/91 (32%), Positives = 52/91 (57%)
Query: 121 PQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQV-ASDMLP---MSTERIVTVHG 176
P + +L++PA+ GSLIGK G +K I++ S V+V S+ LP + +R+V V G
Sbjct: 274 PSKVSTRLLVPASQAGSLIGKQGGTVKAIQEASACIVRVLGSEDLPVFALQDDRVVEVVG 333
Query: 177 NPDTISQAIYQICLVLIECTLQVVKGAVIPY 207
P ++ +A+ I L + +V ++IP+
Sbjct: 334 EPTSVHRALELIASHLRKF---LVDRSIIPF 361
Score = 59 (25.8 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 20 LFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDG 57
+F V ++ +IG G +++++ +E+ A+I I DG
Sbjct: 188 VFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDG 225
Score = 54 (24.1 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 299 AGCVIGKAGSRLLEIRQISGAQINIH-TGTESHKKMFHIQGCQEAVSLAQYLI 350
A VIG +GS + R++SGA + I T + + G V A LI
Sbjct: 469 ADAVIGTSGSNISYTRRLSGATVTIQETRGVPGEMTVEVSGTGSQVQTAVQLI 521
>UNIPROTKB|J3KQU3 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 Ensembl:ENST00000449198 Uniprot:J3KQU3
Length = 277
Score = 120 (47.3 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 42/131 (32%), Positives = 64/131 (48%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS--DMLPMSTERIVTVHGNPDTIS 182
Q+K+++P + G +IGKGG +K + + SGA VQ++ D + + ER+VTV G P+
Sbjct: 132 QVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQ-ERVVTVSGEPEQNR 190
Query: 183 QAIYQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSG--GQAYTLHGEYAVPVQEVAG 240
+A+ ++ + I+ Q I Y T GPV S G Y E AG
Sbjct: 191 KAV-ELIIQKIQEDPQSGSCLNISYANVT---GPVANSNPTGSPYANTAEVLPTAAAAAG 246
Query: 241 KKQPHPLAGLA 251
LAG+A
Sbjct: 247 LLGHANLAGVA 257
Score = 99 (39.9 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 20/59 (33%), Positives = 37/59 (62%)
Query: 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS--DMLPMSTERIVTVHGNPDTIS 182
LK++IP+ GS+IGKGG I ++ +GA ++++ D P +TER+ + G + ++
Sbjct: 11 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALN 69
Score = 60 (26.2 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 27/117 (23%), Positives = 50/117 (42%)
Query: 289 ETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHT---GTESHKKMFHIQGCQE---- 341
+ +I++ + AG +IGK G+ + + + SGA + + G +++ + G E
Sbjct: 132 QVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRK 191
Query: 342 AVSLAQYLIN------MCIELQKNNTTNTSDNPEPADLDAAISAFM--TASVNSSLI 390
AV L I C+ + N T N P A +A + TA+ + L+
Sbjct: 192 AVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPYANTAEVLPTAAAAAGLL 248
Score = 52 (23.4 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 33 LIGPGGCIVRRLRKESGAKISIT 55
+IG GG + +L+KE+GA I ++
Sbjct: 23 IIGKGGQTIVQLQKETGATIKLS 45
>UNIPROTKB|F1NP95 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 EMBL:AADN02003296
EMBL:AADN02003297 EMBL:AADN02003298 EMBL:AADN02003299
EMBL:AADN02003300 EMBL:AADN02003301 EMBL:AADN02003302
EMBL:AADN02003303 EMBL:AADN02003304 EMBL:AADN02003305
EMBL:AADN02003306 EMBL:AADN02003307 EMBL:AADN02003308
EMBL:AADN02003309 EMBL:AADN02003310 EMBL:AADN02003311
EMBL:AADN02003312 EMBL:AADN02003313 EMBL:AADN02003314
EMBL:AADN02003315 IPI:IPI00814536 Ensembl:ENSGALT00000016012
ArrayExpress:F1NP95 Uniprot:F1NP95
Length = 345
Score = 123 (48.4 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 56/188 (29%), Positives = 82/188 (43%)
Query: 82 YPGHTLWVTSVDNVCTAYN----FMCRSLEDYHINRNRMENCS---PQPL-------QLK 127
YPG T V + A N F+ + + N + E S PQ Q+K
Sbjct: 75 YPGTTERVCLIQGTVEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRIKQVK 134
Query: 128 LVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS--DMLPMSTERIVTVHGNPDTISQAI 185
+++P + G +IGKGG +K I + SGA VQ++ D + + ER+VTV G P+ +A+
Sbjct: 135 IIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQ-ERVVTVSGEPEQNRKAV 193
Query: 186 YQICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSG--GQAYTLHGEYAVPVQEVAGKKQ 243
++ + I+ Q I Y T GPV S G Y E AG
Sbjct: 194 -ELIIQKIQEDPQSGSCLNISYANVT---GPVANSNPTGSPYANTAEVLPTAAAAAGLLG 249
Query: 244 PHPLAGLA 251
LAG+A
Sbjct: 250 HANLAGVA 257
Score = 99 (39.9 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 20/59 (33%), Positives = 37/59 (62%)
Query: 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS--DMLPMSTERIVTVHGNPDTIS 182
LK++IP+ GS+IGKGG I ++ +GA ++++ D P +TER+ + G + ++
Sbjct: 35 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALN 93
Score = 63 (27.2 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 29/121 (23%), Positives = 51/121 (42%)
Query: 285 DDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHT---GTESHKKMFHIQGCQE 341
D + +I++ + AG +IGK G+ + I + SGA + + G +++ + G E
Sbjct: 128 DRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPE 187
Query: 342 ----AVSLAQYLIN------MCIELQKNNTTNTSDNPEPADLDAAISAFM--TASVNSSL 389
AV L I C+ + N T N P A +A + TA+ + L
Sbjct: 188 QNRKAVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPYANTAEVLPTAAAAAGL 247
Query: 390 I 390
+
Sbjct: 248 L 248
Score = 52 (23.4 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 33 LIGPGGCIVRRLRKESGAKISIT 55
+IG GG + +L+KE+GA I ++
Sbjct: 47 IIGKGGQTIVQLQKETGATIKLS 69
>TAIR|locus:2043530 [details] [associations]
symbol:AT2G25970 "AT2G25970" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005829 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 EMBL:AC004747 EMBL:AC005395
eggNOG:NOG300923 KO:K13210 HSSP:Q9UNW9 EMBL:AY078954 EMBL:AK226845
IPI:IPI00540360 PIR:T02627 RefSeq:NP_180167.1 UniGene:At.21555
ProteinModelPortal:O82762 SMR:O82762 STRING:O82762 PaxDb:O82762
PRIDE:O82762 ProMEX:O82762 EnsemblPlants:AT2G25970.1 GeneID:817137
KEGG:ath:AT2G25970 TAIR:At2g25970 HOGENOM:HOG000242545
InParanoid:O82762 OMA:AANSTQD PhylomeDB:O82762
ProtClustDB:CLSN2913011 ArrayExpress:O82762 Genevestigator:O82762
Uniprot:O82762
Length = 632
Score = 106 (42.4 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 31/70 (44%), Positives = 38/70 (54%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDML--PMSTERIVTVHGNPDTISQA 184
K+ IP G +IGKGG IK ++ SGA +QV DM P R V + G PD IS+A
Sbjct: 137 KIDIPNMRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNCATRTVDLTGTPDQISKA 196
Query: 185 IYQICLVLIE 194
I VL E
Sbjct: 197 EQLITDVLQE 206
Score = 77 (32.2 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 24/94 (25%), Positives = 46/94 (48%)
Query: 277 KSGGKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI---HT--GTESHK 331
+ GG+ D FV + + ++ G +IGK G + ++ +GA+I + H G + +
Sbjct: 222 RMGGQAGADQFV---MKIPNNKVGLIIGKGGETIKSMQAKTGARIQVIPLHLPPGDPTPE 278
Query: 332 KMFHIQGCQEAVSLAQYLINMCIELQKNNTTNTS 365
+ I G E + A+ L+N I +N N++
Sbjct: 279 RTLQIDGITEQIEHAKQLVNEIIS-GENRMRNSA 311
>UNIPROTKB|G8JLA5 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 ProteinModelPortal:G8JLA5 SMR:G8JLA5
Ensembl:ENST00000347476 Bgee:G8JLA5 Uniprot:G8JLA5
Length = 109
Score = 112 (44.5 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 24/63 (38%), Positives = 41/63 (65%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS--DMLPMSTERIVTVHGNPDTIS 182
Q+K+++P + G +IGKGG +K + + SGA VQ++ D + + ER+VTV G P+
Sbjct: 27 QVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQ-ERVVTVSGEPEQNR 85
Query: 183 QAI 185
+A+
Sbjct: 86 KAV 88
>RGD|1591892 [details] [associations]
symbol:Fubp1 "far upstream element (FUSE) binding protein 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 RGD:1591892
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0003723 CTD:8880 eggNOG:NOG300923 HOVERGEN:HBG000625
KO:K13210 InterPro:IPR015096 Pfam:PF09005 EMBL:BC107942
IPI:IPI00373591 RefSeq:NP_001032742.1 UniGene:Rn.177078
ProteinModelPortal:Q32PX7 SMR:Q32PX7 STRING:Q32PX7
PhosphoSite:Q32PX7 PRIDE:Q32PX7 GeneID:654496 KEGG:rno:654496
NextBio:714902 Genevestigator:Q32PX7 Uniprot:Q32PX7
Length = 639
Score = 85 (35.0 bits), Expect = 8.1e-06, Sum P(3) = 8.1e-06
Identities = 22/69 (31%), Positives = 42/69 (60%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMST--ERIVTVHGNPDTISQA 184
+++IPA+ G +IGKGG IK +++ +G + + D P +T ++ + + G+P + QA
Sbjct: 184 EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDG-PQNTGADKPLRITGDPYKVQQA 242
Query: 185 IYQICLVLI 193
++ L LI
Sbjct: 243 -KEMVLELI 250
Score = 75 (31.5 bits), Expect = 8.1e-06, Sum P(3) = 8.1e-06
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 289 ETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTG----TESHKKMFHIQGCQEAVS 344
E ++ G +IGK G + I Q SGA+I + + + K+F I+G + +
Sbjct: 373 EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQID 432
Query: 345 LAQYLI 350
A+ LI
Sbjct: 433 YARQLI 438
Score = 66 (28.3 bits), Expect = 0.00075, Sum P(3) = 0.00075
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 130 IPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQA 184
IP G +IG+ G IK I++ +G +Q D + +RI + G PD A
Sbjct: 277 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD-GTTPDRIAQITGPPDRCQHA 330
Score = 63 (27.2 bits), Expect = 8.1e-06, Sum P(3) = 8.1e-06
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 30 ISCLIGPGGCIVRRLRKESGAKISIT--DGACPDR 62
+ +IG GG + R+++ESG KI I G P+R
Sbjct: 107 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPER 141
>UNIPROTKB|Q32PX7 [details] [associations]
symbol:Fubp1 "Far upstream element-binding protein 1"
species:10116 "Rattus norvegicus" [GO:0010628 "positive regulation
of gene expression" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1591892 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0003723 CTD:8880 eggNOG:NOG300923 HOVERGEN:HBG000625
KO:K13210 InterPro:IPR015096 Pfam:PF09005 EMBL:BC107942
IPI:IPI00373591 RefSeq:NP_001032742.1 UniGene:Rn.177078
ProteinModelPortal:Q32PX7 SMR:Q32PX7 STRING:Q32PX7
PhosphoSite:Q32PX7 PRIDE:Q32PX7 GeneID:654496 KEGG:rno:654496
NextBio:714902 Genevestigator:Q32PX7 Uniprot:Q32PX7
Length = 639
Score = 85 (35.0 bits), Expect = 8.1e-06, Sum P(3) = 8.1e-06
Identities = 22/69 (31%), Positives = 42/69 (60%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMST--ERIVTVHGNPDTISQA 184
+++IPA+ G +IGKGG IK +++ +G + + D P +T ++ + + G+P + QA
Sbjct: 184 EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDG-PQNTGADKPLRITGDPYKVQQA 242
Query: 185 IYQICLVLI 193
++ L LI
Sbjct: 243 -KEMVLELI 250
Score = 75 (31.5 bits), Expect = 8.1e-06, Sum P(3) = 8.1e-06
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 289 ETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTG----TESHKKMFHIQGCQEAVS 344
E ++ G +IGK G + I Q SGA+I + + + K+F I+G + +
Sbjct: 373 EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQID 432
Query: 345 LAQYLI 350
A+ LI
Sbjct: 433 YARQLI 438
Score = 66 (28.3 bits), Expect = 0.00075, Sum P(3) = 0.00075
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 130 IPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQA 184
IP G +IG+ G IK I++ +G +Q D + +RI + G PD A
Sbjct: 277 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD-GTTPDRIAQITGPPDRCQHA 330
Score = 63 (27.2 bits), Expect = 8.1e-06, Sum P(3) = 8.1e-06
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 30 ISCLIGPGGCIVRRLRKESGAKISIT--DGACPDR 62
+ +IG GG + R+++ESG KI I G P+R
Sbjct: 107 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPER 141
>UNIPROTKB|Q5T6W1 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GO:GO:0030529 EMBL:AL354733
HOGENOM:HOG000019764 HOVERGEN:HBG051916 UniGene:Hs.522257
HGNC:HGNC:5044 ChiTaRS:HNRNPK IPI:IPI00640296 SMR:Q5T6W1
Ensembl:ENST00000376256 Uniprot:Q5T6W1
Length = 306
Score = 131 (51.2 bits), Expect = 8.3e-06, P = 8.3e-06
Identities = 29/85 (34%), Positives = 51/85 (60%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQA 184
+L+L+I + G +IG G KIK++R+ + +++ + P ST+R+V + G PD + +
Sbjct: 77 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVEC 136
Query: 185 IYQICLVLIECTLQVVKGAVIPYEP 209
I +I L LI + +KG PY+P
Sbjct: 137 I-KIILDLI--SESPIKGRAQPYDP 158
>UNIPROTKB|Q96AE4 [details] [associations]
symbol:FUBP1 "Far upstream element-binding protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0010628 "positive
regulation of gene expression" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0003700 GO:GO:0003723
GO:GO:0006366 GO:GO:0003697 GO:GO:0010628 EMBL:U05040 EMBL:AC096948
EMBL:BC017247 IPI:IPI00375441 IPI:IPI00853059 PIR:A53184
RefSeq:NP_003893.2 UniGene:Hs.567380 PDB:1J4W PDB:2KXH PDBsum:1J4W
PDBsum:2KXH ProteinModelPortal:Q96AE4 SMR:Q96AE4 DIP:DIP-47273N
IntAct:Q96AE4 MINT:MINT-1374324 STRING:Q96AE4 PhosphoSite:Q96AE4
DMDM:116241370 REPRODUCTION-2DPAGE:IPI00375441 PaxDb:Q96AE4
PRIDE:Q96AE4 DNASU:8880 Ensembl:ENST00000294623
Ensembl:ENST00000370768 GeneID:8880 KEGG:hsa:8880 UCSC:uc001dii.3
CTD:8880 GeneCards:GC01M078400 HGNC:HGNC:4004 HPA:HPA006149
MIM:603444 neXtProt:NX_Q96AE4 PharmGKB:PA28420 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210 OrthoDB:EOG4STS4G
ChiTaRS:FUBP1 EvolutionaryTrace:Q96AE4 GenomeRNAi:8880
NextBio:33343 ArrayExpress:Q96AE4 Bgee:Q96AE4 CleanEx:HS_FUBP1
Genevestigator:Q96AE4 GermOnline:ENSG00000162613 InterPro:IPR015096
Pfam:PF09005 Uniprot:Q96AE4
Length = 644
Score = 85 (35.0 bits), Expect = 8.4e-06, Sum P(3) = 8.4e-06
Identities = 22/69 (31%), Positives = 42/69 (60%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMST--ERIVTVHGNPDTISQA 184
+++IPA+ G +IGKGG IK +++ +G + + D P +T ++ + + G+P + QA
Sbjct: 189 EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDG-PQNTGADKPLRITGDPYKVQQA 247
Query: 185 IYQICLVLI 193
++ L LI
Sbjct: 248 -KEMVLELI 255
Score = 75 (31.5 bits), Expect = 8.4e-06, Sum P(3) = 8.4e-06
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 289 ETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTG----TESHKKMFHIQGCQEAVS 344
E ++ G +IGK G + I Q SGA+I + + + K+F I+G + +
Sbjct: 378 EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQID 437
Query: 345 LAQYLI 350
A+ LI
Sbjct: 438 YARQLI 443
Score = 69 (29.3 bits), Expect = 0.00039, Sum P(3) = 0.00039
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 130 IPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQA 184
IP G +IG+ G IK I++ +G +Q D + ERI + G PD A
Sbjct: 282 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD-GTTPERIAQITGPPDRCQHA 335
Score = 63 (27.2 bits), Expect = 8.4e-06, Sum P(3) = 8.4e-06
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 30 ISCLIGPGGCIVRRLRKESGAKISIT--DGACPDR 62
+ +IG GG + R+++ESG KI I G P+R
Sbjct: 112 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPER 146
>UNIPROTKB|J9P014 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 EMBL:AAEX03004886
Ensembl:ENSCAFT00000046408 Uniprot:J9P014
Length = 644
Score = 85 (35.0 bits), Expect = 8.4e-06, Sum P(3) = 8.4e-06
Identities = 22/69 (31%), Positives = 42/69 (60%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMST--ERIVTVHGNPDTISQA 184
+++IPA+ G +IGKGG IK +++ +G + + D P +T ++ + + G+P + QA
Sbjct: 189 EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDG-PQNTGADKPLRITGDPYKVQQA 247
Query: 185 IYQICLVLI 193
++ L LI
Sbjct: 248 -KEMVLELI 255
Score = 75 (31.5 bits), Expect = 8.4e-06, Sum P(3) = 8.4e-06
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 289 ETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTG----TESHKKMFHIQGCQEAVS 344
E ++ G +IGK G + I Q SGA+I + + + K+F I+G + +
Sbjct: 378 EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQID 437
Query: 345 LAQYLI 350
A+ LI
Sbjct: 438 YARQLI 443
Score = 66 (28.3 bits), Expect = 0.00077, Sum P(3) = 0.00077
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 130 IPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQA 184
IP G +IG+ G IK I++ +G +Q D + +RI + G PD A
Sbjct: 282 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD-GTTPDRIAQITGPPDRCQHA 335
Score = 63 (27.2 bits), Expect = 8.4e-06, Sum P(3) = 8.4e-06
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 30 ISCLIGPGGCIVRRLRKESGAKISIT--DGACPDR 62
+ +IG GG + R+++ESG KI I G P+R
Sbjct: 112 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPER 146
>UNIPROTKB|F1S9S5 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 EMBL:CU695021
Ensembl:ENSSSCT00000004173 Uniprot:F1S9S5
Length = 645
Score = 85 (35.0 bits), Expect = 8.4e-06, Sum P(3) = 8.4e-06
Identities = 22/69 (31%), Positives = 42/69 (60%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMST--ERIVTVHGNPDTISQA 184
+++IPA+ G +IGKGG IK +++ +G + + D P +T ++ + + G+P + QA
Sbjct: 189 EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDG-PQNTGADKPLRITGDPYKVQQA 247
Query: 185 IYQICLVLI 193
++ L LI
Sbjct: 248 -KEMVLELI 255
Score = 75 (31.5 bits), Expect = 8.4e-06, Sum P(3) = 8.4e-06
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 289 ETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTG----TESHKKMFHIQGCQEAVS 344
E ++ G +IGK G + I Q SGA+I + + + K+F I+G + +
Sbjct: 378 EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQID 437
Query: 345 LAQYLI 350
A+ LI
Sbjct: 438 YARQLI 443
Score = 66 (28.3 bits), Expect = 0.00077, Sum P(3) = 0.00077
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 130 IPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQA 184
IP G +IG+ G IK I++ +G +Q D + +RI + G PD A
Sbjct: 282 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD-GTTPDRIAQITGPPDRCQHA 335
Score = 63 (27.2 bits), Expect = 8.4e-06, Sum P(3) = 8.4e-06
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 30 ISCLIGPGGCIVRRLRKESGAKISIT--DGACPDR 62
+ +IG GG + R+++ESG KI I G P+R
Sbjct: 112 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPER 146
>MGI|MGI:1196294 [details] [associations]
symbol:Fubp1 "far upstream element (FUSE) binding protein 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=ISO] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:1196294 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0003723
eggNOG:NOG300923 HOGENOM:HOG000231552 HOVERGEN:HBG000625
InterPro:IPR015096 Pfam:PF09005 EMBL:BC014763 EMBL:AK029458
IPI:IPI00467635 IPI:IPI00874931 UniGene:Mm.278922 PDB:1X4M PDB:1X4N
PDBsum:1X4M PDBsum:1X4N ProteinModelPortal:Q91WJ8 SMR:Q91WJ8
IntAct:Q91WJ8 STRING:Q91WJ8 PhosphoSite:Q91WJ8
REPRODUCTION-2DPAGE:Q91WJ8 PaxDb:Q91WJ8 PRIDE:Q91WJ8
UCSC:uc008rsv.1 InParanoid:Q91WJ8 EvolutionaryTrace:Q91WJ8
CleanEx:MM_FUBP1 Genevestigator:Q91WJ8
GermOnline:ENSMUSG00000028034 Uniprot:Q91WJ8
Length = 651
Score = 85 (35.0 bits), Expect = 8.7e-06, Sum P(3) = 8.7e-06
Identities = 22/69 (31%), Positives = 42/69 (60%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMST--ERIVTVHGNPDTISQA 184
+++IPA+ G +IGKGG IK +++ +G + + D P +T ++ + + G+P + QA
Sbjct: 185 EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDG-PQNTGADKPLRITGDPYKVQQA 243
Query: 185 IYQICLVLI 193
++ L LI
Sbjct: 244 -KEMVLELI 251
Score = 75 (31.5 bits), Expect = 8.7e-06, Sum P(3) = 8.7e-06
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 289 ETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTG----TESHKKMFHIQGCQEAVS 344
E ++ G +IGK G + I Q SGA+I + + + K+F I+G + +
Sbjct: 374 EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRSPPPNADPNMKLFTIRGTPQQID 433
Query: 345 LAQYLI 350
A+ LI
Sbjct: 434 YARQLI 439
Score = 66 (28.3 bits), Expect = 0.00079, Sum P(3) = 0.00079
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 130 IPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQA 184
IP G +IG+ G IK I++ +G +Q D + +RI + G PD A
Sbjct: 278 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD-GTTPDRIAQITGPPDRCQHA 331
Score = 63 (27.2 bits), Expect = 8.7e-06, Sum P(3) = 8.7e-06
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 30 ISCLIGPGGCIVRRLRKESGAKISIT--DGACPDR 62
+ +IG GG + R+++ESG KI I G P+R
Sbjct: 108 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPER 142
>UNIPROTKB|E9PEB5 [details] [associations]
symbol:FUBP1 "Far upstream element-binding protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
EMBL:AC096948 HGNC:HGNC:4004 ChiTaRS:FUBP1 InterPro:IPR015096
Pfam:PF09005 IPI:IPI00644386 ProteinModelPortal:E9PEB5 SMR:E9PEB5
PRIDE:E9PEB5 Ensembl:ENST00000370767 ArrayExpress:E9PEB5
Bgee:E9PEB5 Uniprot:E9PEB5
Length = 655
Score = 85 (35.0 bits), Expect = 8.9e-06, Sum P(3) = 8.9e-06
Identities = 22/69 (31%), Positives = 42/69 (60%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMST--ERIVTVHGNPDTISQA 184
+++IPA+ G +IGKGG IK +++ +G + + D P +T ++ + + G+P + QA
Sbjct: 189 EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDG-PQNTGADKPLRITGDPYKVQQA 247
Query: 185 IYQICLVLI 193
++ L LI
Sbjct: 248 -KEMVLELI 255
Score = 75 (31.5 bits), Expect = 8.9e-06, Sum P(3) = 8.9e-06
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 289 ETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTG----TESHKKMFHIQGCQEAVS 344
E ++ G +IGK G + I Q SGA+I + + + K+F I+G + +
Sbjct: 378 EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQID 437
Query: 345 LAQYLI 350
A+ LI
Sbjct: 438 YARQLI 443
Score = 69 (29.3 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 130 IPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQA 184
IP G +IG+ G IK I++ +G +Q D + ERI + G PD A
Sbjct: 282 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD-GTTPERIAQITGPPDRCQHA 335
Score = 63 (27.2 bits), Expect = 8.9e-06, Sum P(3) = 8.9e-06
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 30 ISCLIGPGGCIVRRLRKESGAKISIT--DGACPDR 62
+ +IG GG + R+++ESG KI I G P+R
Sbjct: 112 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPER 146
>WB|WBGene00022738 [details] [associations]
symbol:ZK418.9 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 eggNOG:NOG300923 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 HSSP:Q96AE4 EMBL:FO080150
HOGENOM:HOG000018892 PIR:T27855 RefSeq:NP_001023000.1
ProteinModelPortal:Q23487 SMR:Q23487 STRING:Q23487 PaxDb:Q23487
PRIDE:Q23487 EnsemblMetazoa:ZK418.9a GeneID:175989
KEGG:cel:CELE_ZK418.9 UCSC:ZK418.9b.2 CTD:175989 WormBase:ZK418.9a
InParanoid:Q23487 OMA:NCTIEGP NextBio:890626 ArrayExpress:Q23487
Uniprot:Q23487
Length = 557
Score = 99 (39.9 bits), Expect = 9.2e-06, Sum P(4) = 9.2e-06
Identities = 30/102 (29%), Positives = 48/102 (47%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIY 186
++++P G +IGKGG IK + +G +Q D P S +RI + G D I +A
Sbjct: 243 EVIVPRLSAGMIIGKGGEMIKRLAAETGTKIQFKPDTNPNSEDRIAVIMGTRDQIYRATE 302
Query: 187 QICLVLIECTLQVVKGAVIPYEPKTMNAGPVILSGGQAYTLH 228
+I E + +K P + + AG V L G + +H
Sbjct: 303 RIT----EIVNRAIKNNGAPQDRGS--AGTV-LPGQSIFYMH 337
Score = 91 (37.1 bits), Expect = 0.00065, Sum P(3) = 0.00065
Identities = 22/63 (34%), Positives = 34/63 (53%)
Query: 130 IPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQIC 189
+P G +IGKGG +I+ I+ SG VQ+ D ++ R T+ G PD ++ A I
Sbjct: 60 VPEKVVGLVIGKGGSEIRLIQQTSGCRVQMDPDHQSVNGFRNCTIEGPPDQVAVARQMIT 119
Query: 190 LVL 192
V+
Sbjct: 120 QVI 122
Score = 73 (30.8 bits), Expect = 9.2e-06, Sum P(4) = 9.2e-06
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 300 GCVIGKAGSRLLEIRQISGAQINIHTGTESH---KKMFHIQGCQEAVSLAQYLINMCI-E 355
G VIGK G + +I + +GA + E +K+F I+G Q + A +L+ + + E
Sbjct: 344 GLVIGKGGENIKQIERETGATCGLAPAAEQKNEDEKVFEIKGSQLQIHHASHLVRIKVGE 403
Query: 356 LQKN 359
+ N
Sbjct: 404 ISPN 407
Score = 45 (20.9 bits), Expect = 9.2e-06, Sum P(4) = 9.2e-06
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 30 ISCLIGPGGCIVRRLRKESGAKISI 54
+ +IG GG +R +++ SG ++ +
Sbjct: 65 VGLVIGKGGSEIRLIQQTSGCRVQM 89
Score = 44 (20.5 bits), Expect = 1.1e-05, Sum P(4) = 1.1e-05
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAK 51
+ ++I +IG GG +R ++++SG +
Sbjct: 144 IPADKIGLVIGKGGETIRIVQEQSGLR 170
Score = 37 (18.1 bits), Expect = 9.2e-06, Sum P(4) = 9.2e-06
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 390 IEKPTPHPGSMVTLGGLSELLANIAASNVKSTVQTTGAY 428
I TP P GG + A +A Q+TG +
Sbjct: 404 ISPNTPVPPLQGAGGGYQQQQAMFSAGTQNGGYQSTGGF 442
>UNIPROTKB|B4DT31 [details] [associations]
symbol:FUBP1 "cDNA FLJ53425, highly similar to Far upstream
element-binding protein 1" species:9606 "Homo sapiens" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0003723 EMBL:AC096948 UniGene:Hs.567380
HGNC:HGNC:4004 HOGENOM:HOG000231552 HOVERGEN:HBG000625
ChiTaRS:FUBP1 InterPro:IPR015096 Pfam:PF09005 EMBL:AK300032
IPI:IPI00641948 SMR:B4DT31 STRING:B4DT31 Ensembl:ENST00000436586
UCSC:uc010orm.2 OMA:NGQEGDQ Uniprot:B4DT31
Length = 665
Score = 85 (35.0 bits), Expect = 9.3e-06, Sum P(3) = 9.3e-06
Identities = 22/69 (31%), Positives = 42/69 (60%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMST--ERIVTVHGNPDTISQA 184
+++IPA+ G +IGKGG IK +++ +G + + D P +T ++ + + G+P + QA
Sbjct: 210 EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDG-PQNTGADKPLRITGDPYKVQQA 268
Query: 185 IYQICLVLI 193
++ L LI
Sbjct: 269 -KEMVLELI 276
Score = 75 (31.5 bits), Expect = 9.3e-06, Sum P(3) = 9.3e-06
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 289 ETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTG----TESHKKMFHIQGCQEAVS 344
E ++ G +IGK G + I Q SGA+I + + + K+F I+G + +
Sbjct: 399 EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQID 458
Query: 345 LAQYLI 350
A+ LI
Sbjct: 459 YARQLI 464
Score = 69 (29.3 bits), Expect = 0.00043, Sum P(3) = 0.00043
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 130 IPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQA 184
IP G +IG+ G IK I++ +G +Q D + ERI + G PD A
Sbjct: 303 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD-GTTPERIAQITGPPDRCQHA 356
Score = 63 (27.2 bits), Expect = 9.3e-06, Sum P(3) = 9.3e-06
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 30 ISCLIGPGGCIVRRLRKESGAKISIT--DGACPDR 62
+ +IG GG + R+++ESG KI I G P+R
Sbjct: 133 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPER 167
>UNIPROTKB|E2RJQ2 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:AAEX03004886
Ensembl:ENSCAFT00000032426 Uniprot:E2RJQ2
Length = 668
Score = 85 (35.0 bits), Expect = 9.5e-06, Sum P(3) = 9.5e-06
Identities = 22/69 (31%), Positives = 42/69 (60%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMST--ERIVTVHGNPDTISQA 184
+++IPA+ G +IGKGG IK +++ +G + + D P +T ++ + + G+P + QA
Sbjct: 212 EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDG-PQNTGADKPLRITGDPYKVQQA 270
Query: 185 IYQICLVLI 193
++ L LI
Sbjct: 271 -KEMVLELI 278
Score = 75 (31.5 bits), Expect = 9.5e-06, Sum P(3) = 9.5e-06
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 289 ETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTG----TESHKKMFHIQGCQEAVS 344
E ++ G +IGK G + I Q SGA+I + + + K+F I+G + +
Sbjct: 401 EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQID 460
Query: 345 LAQYLI 350
A+ LI
Sbjct: 461 YARQLI 466
Score = 66 (28.3 bits), Expect = 0.00086, Sum P(3) = 0.00086
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 130 IPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQA 184
IP G +IG+ G IK I++ +G +Q D + +RI + G PD A
Sbjct: 305 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD-GTTPDRIAQITGPPDRCQHA 358
Score = 63 (27.2 bits), Expect = 9.5e-06, Sum P(3) = 9.5e-06
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 30 ISCLIGPGGCIVRRLRKESGAKISIT--DGACPDR 62
+ +IG GG + R+++ESG KI I G P+R
Sbjct: 135 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPER 169
>UNIPROTKB|C9J5V4 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HGNC:HGNC:8652
IPI:IPI00946082 ProteinModelPortal:C9J5V4 SMR:C9J5V4 STRING:C9J5V4
Ensembl:ENST00000497653 HOGENOM:HOG000213901 ArrayExpress:C9J5V4
Bgee:C9J5V4 Uniprot:C9J5V4
Length = 107
Score = 111 (44.1 bits), Expect = 9.5e-06, P = 9.5e-06
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 1 MDGNGDGKIDEDTL---ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDG 57
M G+ G +E L +T+R L H E+ +IG G V+R+R++S A+I+I++G
Sbjct: 1 MSGSDGGLEEEPELSITLTLRMLMHGK----EVGSIIGKKGETVKRIREQSSARITISEG 56
Query: 58 ACPDRI 63
+CP+RI
Sbjct: 57 SCPERI 62
Score = 94 (38.1 bits), Expect = 0.00066, P = 0.00066
Identities = 27/91 (29%), Positives = 43/91 (47%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQ 183
L L++++ GS+IGK G +K IR+ S A + ++ P ERI T+ G+ +
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCP---ERITTITGSTAAVFH 74
Query: 184 AIYQICLVLIE--CTLQVVKGAVIPYEPKTM 212
A+ I L E C G + P T+
Sbjct: 75 AVSMIAFKLDEDLCAAPA-NGGNVSRPPVTL 104
>UNIPROTKB|C9J7A9 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HGNC:HGNC:8652
IPI:IPI00945892 ProteinModelPortal:C9J7A9 SMR:C9J7A9 STRING:C9J7A9
Ensembl:ENST00000490063 ArrayExpress:C9J7A9 Bgee:C9J7A9
Uniprot:C9J7A9
Length = 86
Score = 111 (44.1 bits), Expect = 9.5e-06, P = 9.5e-06
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 1 MDGNGDGKIDEDTL---ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDG 57
M G+ G +E L +T+R L H E+ +IG G V+R+R++S A+I+I++G
Sbjct: 1 MSGSDGGLEEEPELSITLTLRMLMHGK----EVGSIIGKKGETVKRIREQSSARITISEG 56
Query: 58 ACPDRI 63
+CP+RI
Sbjct: 57 SCPERI 62
Score = 93 (37.8 bits), Expect = 0.00084, P = 0.00084
Identities = 23/71 (32%), Positives = 37/71 (52%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQ 183
L L++++ GS+IGK G +K IR+ S A + ++ P ERI T+ G+ +
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCP---ERITTITGSTAAVFH 74
Query: 184 AIYQICLVLIE 194
A+ I L E
Sbjct: 75 AVSMIAFKLDE 85
>UNIPROTKB|C9JSA6 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HGNC:HGNC:8652
IPI:IPI00945164 ProteinModelPortal:C9JSA6 SMR:C9JSA6 STRING:C9JSA6
Ensembl:ENST00000489595 ArrayExpress:C9JSA6 Bgee:C9JSA6
Uniprot:C9JSA6
Length = 92
Score = 111 (44.1 bits), Expect = 9.5e-06, P = 9.5e-06
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 1 MDGNGDGKIDEDTL---ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDG 57
M G+ G +E L +T+R L H E+ +IG G V+R+R++S A+I+I++G
Sbjct: 1 MSGSDGGLEEEPELSITLTLRMLMHGK----EVGSIIGKKGETVKRIREQSSARITISEG 56
Query: 58 ACPDRI 63
+CP+RI
Sbjct: 57 SCPERI 62
Score = 93 (37.8 bits), Expect = 0.00084, P = 0.00084
Identities = 23/71 (32%), Positives = 37/71 (52%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQ 183
L L++++ GS+IGK G +K IR+ S A + ++ P ERI T+ G+ +
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCP---ERITTITGSTAAVFH 74
Query: 184 AIYQICLVLIE 194
A+ I L E
Sbjct: 75 AVSMIAFKLDE 85
>UNIPROTKB|C9IZV9 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HGNC:HGNC:8652
IPI:IPI00946687 ProteinModelPortal:C9IZV9 SMR:C9IZV9 STRING:C9IZV9
Ensembl:ENST00000483411 ArrayExpress:C9IZV9 Bgee:C9IZV9
Uniprot:C9IZV9
Length = 75
Score = 111 (44.1 bits), Expect = 9.5e-06, P = 9.5e-06
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 1 MDGNGDGKIDEDTL---ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDG 57
M G+ G +E L +T+R L H E+ +IG G V+R+R++S A+I+I++G
Sbjct: 1 MSGSDGGLEEEPELSITLTLRMLMHGK----EVGSIIGKKGETVKRIREQSSARITISEG 56
Query: 58 ACPDRI 63
+CP+RI
Sbjct: 57 SCPERI 62
>UNIPROTKB|E1BX03 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010628 "positive regulation of gene
expression" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GO:GO:0010628 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:AADN02012752
IPI:IPI00679838 Ensembl:ENSGALT00000014525 ArrayExpress:E1BX03
Uniprot:E1BX03
Length = 645
Score = 85 (35.0 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 22/69 (31%), Positives = 42/69 (60%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMST--ERIVTVHGNPDTISQA 184
+++IPA+ G +IGKGG IK +++ +G + + D P +T ++ + + G+P + QA
Sbjct: 188 EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDG-PQNTGADKPLRITGDPYKVQQA 246
Query: 185 IYQICLVLI 193
++ L LI
Sbjct: 247 -KEMVLELI 254
Score = 78 (32.5 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 289 ETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTG----TESHKKMFHIQGCQEAVS 344
E ++ G +IGK G + I Q SGA+I + + + KMF I+G + +
Sbjct: 378 EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKMFTIRGTPQQID 437
Query: 345 LAQYLI 350
A+ LI
Sbjct: 438 YARQLI 443
Score = 66 (28.3 bits), Expect = 0.00091, Sum P(3) = 0.00091
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 130 IPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQA 184
IP G +IG+ G IK I++ +G +Q D + +RI + G PD A
Sbjct: 281 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD-GTTPDRIAQITGPPDRCQHA 334
Score = 59 (25.8 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 30 ISCLIGPGGCIVRRLRKESGAKISIT----DGACPDR 62
+ +IG GG + R+++ESG KI I G P+R
Sbjct: 109 VGFIIGRGGEQISRIQQESGCKIQIAPALDSGGLPER 145
>UNIPROTKB|F1S9S9 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GO:GO:0010628 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:CU695021
Ensembl:ENSSSCT00000004169 Uniprot:F1S9S9
Length = 708
Score = 85 (35.0 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 22/69 (31%), Positives = 42/69 (60%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMST--ERIVTVHGNPDTISQA 184
+++IPA+ G +IGKGG IK +++ +G + + D P +T ++ + + G+P + QA
Sbjct: 229 EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDG-PQNTGADKPLRITGDPYKVQQA 287
Query: 185 IYQICLVLI 193
++ L LI
Sbjct: 288 -KEMVLELI 295
Score = 75 (31.5 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 289 ETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTG----TESHKKMFHIQGCQEAVS 344
E ++ G +IGK G + I Q SGA+I + + + K+F I+G + +
Sbjct: 418 EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQID 477
Query: 345 LAQYLI 350
A+ LI
Sbjct: 478 YARQLI 483
Score = 63 (27.2 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 30 ISCLIGPGGCIVRRLRKESGAKISIT--DGACPDR 62
+ +IG GG + R+++ESG KI I G P+R
Sbjct: 152 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPER 186
>UNIPROTKB|F8VWX1 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 IPI:IPI01020747
ProteinModelPortal:F8VWX1 SMR:F8VWX1 Ensembl:ENST00000549571
ArrayExpress:F8VWX1 Bgee:F8VWX1 Uniprot:F8VWX1
Length = 173
Score = 99 (39.9 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 20/59 (33%), Positives = 37/59 (62%)
Query: 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVAS--DMLPMSTERIVTVHGNPDTIS 182
LK++IP+ GS+IGKGG I ++ +GA ++++ D P +TER+ + G + ++
Sbjct: 15 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALN 73
Score = 59 (25.8 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 289 ETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI 323
+ +I++ + AG +IGK G+ + + + SGA + +
Sbjct: 136 QVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL 170
>WB|WBGene00007534 [details] [associations]
symbol:C12D8.1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016246 "RNA
interference" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0016246
GO:GO:0003723 EMBL:Z73969 KO:K13210 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 HSSP:Q96AE4 HOGENOM:HOG000018892
GeneID:179423 KEGG:cel:CELE_C12D8.1 UCSC:C12D8.1b CTD:179423
NextBio:905322 PIR:T19217 RefSeq:NP_505633.1
ProteinModelPortal:Q17936 SMR:Q17936 IntAct:Q17936
MINT:MINT-1038809 STRING:Q17936 PRIDE:Q17936
EnsemblMetazoa:C12D8.1b WormBase:C12D8.1b InParanoid:Q17936
OMA:PERCAVI ArrayExpress:Q17936 Uniprot:Q17936
Length = 611
Score = 97 (39.2 bits), Expect = 8.5e-05, Sum P(2) = 8.5e-05
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 104 RSLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDM 163
R +D +N +N + + K IP + G +IG+GG +I+ I+ +G VQ++ D
Sbjct: 53 RPADDTDLNPFMDDN---EAVNEKYPIPESAVGIVIGRGGSEIQGIQAKAGCRVQMSPDA 109
Query: 164 LPMSTERIVTVHGNPDTISQAIYQI 188
P S R+VT+ G+ + A + I
Sbjct: 110 DPSSGVRMVTLEGSRSNVETAKHLI 134
Score = 93 (37.8 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 27/90 (30%), Positives = 45/90 (50%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIY 186
++V+P + G +IGK G IK + +G +Q D P + ER + G D I +A
Sbjct: 252 EVVVPRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDDDPSTPERCAVIMGTRDQIYRATE 311
Query: 187 QICLVLIECTLQV-----VKGAVIPYEPKT 211
+I ++ + T+Q V GA++ E T
Sbjct: 312 RITELVKKSTMQQGGGGNVAGAMVSNEAST 341
Score = 75 (31.5 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 23/71 (32%), Positives = 37/71 (52%)
Query: 300 GCVIGKAGSRLLEIRQISGAQINIH---TGTESHKKMFHIQGCQEAVSLAQYLINMCIEL 356
G VIGK G + +I SGA + TG + +K+F I+G + A+ A++LI + +
Sbjct: 352 GLVIGKGGETIKQINSESGAHCELSRDPTGN-ADEKVFVIKGGKRAIEHAKHLIRIKVGD 410
Query: 357 QKNNTTNTSDN 367
NT D+
Sbjct: 411 IAPNTPFRDDS 421
Score = 50 (22.7 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 28 NEISCLIGPGGCIVRRLRKESGAKI-------SITDGACPDRI 63
N +IG G +R+L+++SG K+ S++D + P RI
Sbjct: 164 NRCGLIIGKSGDTIRQLQEKSGCKMILVQDNQSVSDQSKPLRI 206
Score = 44 (20.5 bits), Expect = 7.2e-05, Sum P(3) = 7.2e-05
Identities = 7/31 (22%), Positives = 19/31 (61%)
Query: 30 ISCLIGPGGCIVRRLRKESGAKISITDGACP 60
+ +IG GG ++ ++ ++G ++ ++ A P
Sbjct: 81 VGIVIGRGGSEIQGIQAKAGCRVQMSPDADP 111
>UNIPROTKB|Q17936 [details] [associations]
symbol:C12D8.1 "Protein C12D8.1, isoform b" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0016246 GO:GO:0003723
EMBL:Z73969 KO:K13210 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 HSSP:Q96AE4 HOGENOM:HOG000018892
GeneID:179423 KEGG:cel:CELE_C12D8.1 UCSC:C12D8.1b CTD:179423
NextBio:905322 PIR:T19217 RefSeq:NP_505633.1
ProteinModelPortal:Q17936 SMR:Q17936 IntAct:Q17936
MINT:MINT-1038809 STRING:Q17936 PRIDE:Q17936
EnsemblMetazoa:C12D8.1b WormBase:C12D8.1b InParanoid:Q17936
OMA:PERCAVI ArrayExpress:Q17936 Uniprot:Q17936
Length = 611
Score = 97 (39.2 bits), Expect = 8.5e-05, Sum P(2) = 8.5e-05
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 104 RSLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDM 163
R +D +N +N + + K IP + G +IG+GG +I+ I+ +G VQ++ D
Sbjct: 53 RPADDTDLNPFMDDN---EAVNEKYPIPESAVGIVIGRGGSEIQGIQAKAGCRVQMSPDA 109
Query: 164 LPMSTERIVTVHGNPDTISQAIYQI 188
P S R+VT+ G+ + A + I
Sbjct: 110 DPSSGVRMVTLEGSRSNVETAKHLI 134
Score = 93 (37.8 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 27/90 (30%), Positives = 45/90 (50%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIY 186
++V+P + G +IGK G IK + +G +Q D P + ER + G D I +A
Sbjct: 252 EVVVPRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDDDPSTPERCAVIMGTRDQIYRATE 311
Query: 187 QICLVLIECTLQV-----VKGAVIPYEPKT 211
+I ++ + T+Q V GA++ E T
Sbjct: 312 RITELVKKSTMQQGGGGNVAGAMVSNEAST 341
Score = 75 (31.5 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 23/71 (32%), Positives = 37/71 (52%)
Query: 300 GCVIGKAGSRLLEIRQISGAQINIH---TGTESHKKMFHIQGCQEAVSLAQYLINMCIEL 356
G VIGK G + +I SGA + TG + +K+F I+G + A+ A++LI + +
Sbjct: 352 GLVIGKGGETIKQINSESGAHCELSRDPTGN-ADEKVFVIKGGKRAIEHAKHLIRIKVGD 410
Query: 357 QKNNTTNTSDN 367
NT D+
Sbjct: 411 IAPNTPFRDDS 421
Score = 50 (22.7 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 28 NEISCLIGPGGCIVRRLRKESGAKI-------SITDGACPDRI 63
N +IG G +R+L+++SG K+ S++D + P RI
Sbjct: 164 NRCGLIIGKSGDTIRQLQEKSGCKMILVQDNQSVSDQSKPLRI 206
Score = 44 (20.5 bits), Expect = 7.2e-05, Sum P(3) = 7.2e-05
Identities = 7/31 (22%), Positives = 19/31 (61%)
Query: 30 ISCLIGPGGCIVRRLRKESGAKISITDGACP 60
+ +IG GG ++ ++ ++G ++ ++ A P
Sbjct: 81 VGIVIGRGGSEIQGIQAKAGCRVQMSPDADP 111
>WB|WBGene00013347 [details] [associations]
symbol:Y59A8B.10 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 eggNOG:NOG258094
KO:K14944 EMBL:AL132898 GeneID:180183 KEGG:cel:CELE_Y59A8B.10
CTD:180183 HSSP:P51513 RefSeq:NP_001256769.1
ProteinModelPortal:Q9GRY9 SMR:Q9GRY9 DIP:DIP-24651N IntAct:Q9GRY9
MINT:MINT-1109012 STRING:Q9GRY9 PaxDb:Q9GRY9 PRIDE:Q9GRY9
EnsemblMetazoa:Y59A8B.10a UCSC:Y59A8B.10 WormBase:Y59A8B.10a
HOGENOM:HOG000017831 InParanoid:Q9GRY9 OMA:LAKYNIM NextBio:908344
ArrayExpress:Q9GRY9 Uniprot:Q9GRY9
Length = 413
Score = 109 (43.4 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 27/69 (39%), Positives = 38/69 (55%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQV----ASDMLPMSTERIVTV-HGNPD 179
++K+V+P T G +IGK G IKDIR+ G +QV S S ER+VTV H
Sbjct: 135 EIKIVMPNTSAGMVIGKSGANIKDIREQFGCQIQVYPKAGSVEAKTSLERVVTVAHDEAS 194
Query: 180 TISQAIYQI 188
+ QA ++
Sbjct: 195 ALLQAASRV 203
Score = 97 (39.2 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 22/67 (32%), Positives = 41/67 (61%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVA--SDMLPMSTERIVTVHGNPDTI 181
L +K++IP+ G++IGKGG ++++++ + VQ++ S+ P ++ERI V G + I
Sbjct: 42 LSIKILIPSNAVGAIIGKGGEAMRNLKNDNNCRVQMSKNSETYPGTSERICLVKGRLNNI 101
Query: 182 SQAIYQI 188
I I
Sbjct: 102 MAVIESI 108
Score = 76 (31.8 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 289 ETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIH 324
E +IV+ + AG VIGK+G+ + +IR+ G QI ++
Sbjct: 135 EIKIVMPNTSAGMVIGKSGANIKDIREQFGCQIQVY 170
Score = 49 (22.3 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 9/38 (23%), Positives = 21/38 (55%)
Query: 22 HSSVNV----NEISCLIGPGGCIVRRLRKESGAKISIT 55
H S+ + N + +IG GG +R L+ ++ ++ ++
Sbjct: 41 HLSIKILIPSNAVGAIIGKGGEAMRNLKNDNNCRVQMS 78
>UNIPROTKB|Q9GRY9 [details] [associations]
symbol:Y59A8B.10 "Protein Y59A8B.10, isoform a"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00650000093048 eggNOG:NOG258094 KO:K14944
EMBL:AL132898 GeneID:180183 KEGG:cel:CELE_Y59A8B.10 CTD:180183
HSSP:P51513 RefSeq:NP_001256769.1 ProteinModelPortal:Q9GRY9
SMR:Q9GRY9 DIP:DIP-24651N IntAct:Q9GRY9 MINT:MINT-1109012
STRING:Q9GRY9 PaxDb:Q9GRY9 PRIDE:Q9GRY9 EnsemblMetazoa:Y59A8B.10a
UCSC:Y59A8B.10 WormBase:Y59A8B.10a HOGENOM:HOG000017831
InParanoid:Q9GRY9 OMA:LAKYNIM NextBio:908344 ArrayExpress:Q9GRY9
Uniprot:Q9GRY9
Length = 413
Score = 109 (43.4 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 27/69 (39%), Positives = 38/69 (55%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQV----ASDMLPMSTERIVTV-HGNPD 179
++K+V+P T G +IGK G IKDIR+ G +QV S S ER+VTV H
Sbjct: 135 EIKIVMPNTSAGMVIGKSGANIKDIREQFGCQIQVYPKAGSVEAKTSLERVVTVAHDEAS 194
Query: 180 TISQAIYQI 188
+ QA ++
Sbjct: 195 ALLQAASRV 203
Score = 97 (39.2 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 22/67 (32%), Positives = 41/67 (61%)
Query: 124 LQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVA--SDMLPMSTERIVTVHGNPDTI 181
L +K++IP+ G++IGKGG ++++++ + VQ++ S+ P ++ERI V G + I
Sbjct: 42 LSIKILIPSNAVGAIIGKGGEAMRNLKNDNNCRVQMSKNSETYPGTSERICLVKGRLNNI 101
Query: 182 SQAIYQI 188
I I
Sbjct: 102 MAVIESI 108
Score = 76 (31.8 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 289 ETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIH 324
E +IV+ + AG VIGK+G+ + +IR+ G QI ++
Sbjct: 135 EIKIVMPNTSAGMVIGKSGANIKDIREQFGCQIQVY 170
Score = 49 (22.3 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 9/38 (23%), Positives = 21/38 (55%)
Query: 22 HSSVNV----NEISCLIGPGGCIVRRLRKESGAKISIT 55
H S+ + N + +IG GG +R L+ ++ ++ ++
Sbjct: 41 HLSIKILIPSNAVGAIIGKGGEAMRNLKNDNNCRVQMS 78
>TAIR|locus:2120755 [details] [associations]
symbol:PEP "AT4G26000" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0048367 "shoot system development" evidence=IMP]
[GO:0048467 "gynoecium development" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161564
EMBL:AL049483 GO:GO:0003723 GO:GO:0048367 GO:GO:0048467 HSSP:Q96AE4
KO:K13162 EMBL:AY056288 EMBL:AY099659 EMBL:AY114064 IPI:IPI00547245
PIR:T04255 RefSeq:NP_194330.1 UniGene:At.23137 UniGene:At.66652
ProteinModelPortal:Q9SZH4 SMR:Q9SZH4 IntAct:Q9SZH4 STRING:Q9SZH4
PaxDb:Q9SZH4 PRIDE:Q9SZH4 EnsemblPlants:AT4G26000.1 GeneID:828706
KEGG:ath:AT4G26000 TAIR:At4g26000 eggNOG:NOG314569
HOGENOM:HOG000243588 InParanoid:Q9SZH4 OMA:MCEETRA PhylomeDB:Q9SZH4
ProtClustDB:CLSN2685896 Genevestigator:Q9SZH4 Uniprot:Q9SZH4
Length = 495
Score = 129 (50.5 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 79/347 (22%), Positives = 139/347 (40%)
Query: 19 CLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGAC--PDRIXXXXXXXXXXXXX 76
C+F V V ++ +IG G ++++ +E+ A+I + DG PDRI
Sbjct: 74 CVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPDRIVLISGKEEPEAYM 133
Query: 77 XXXXGYPGHTLWVTSVDNVCTAYNFMCRSLEDYHINRNRMENCSPQPLQLKLVIPATHCG 136
P ++D V + + L D + + ++N ++L++ +T
Sbjct: 134 S-----P-------AMDAVLRVFRRVS-GLPDN--DDDDVQNAGSVFSSVRLLVASTQAI 178
Query: 137 SLIGKGGCKIKDIRDLSGANVQVASDM-LPM---STERIVTVHGNPDTISQAIYQIC--- 189
+LIGK G IK I + SGA+V++ S+ P ERIV + G I +A+ I
Sbjct: 179 NLIGKQGSLIKSIVENSGASVRILSEEETPFYAAQDERIVDLQGEALKILKALEAIVGHL 238
Query: 190 -LVLIECTL-QVVKGAVIPYEPKTMNAGPVILSGGQAYTLHGEYAVPVQEVAGKKQPHPL 247
L++ T+ + + + +T P+ S +T+ P + +++P L
Sbjct: 239 RRFLVDHTVVPLFEKQYLARVSQTRQEEPLAESKSSLHTISSNLMEPDFSLLARREPLFL 298
Query: 248 AGLAVLGIEGIXXXXXXXXXXXXXXXXRVKSGGKDTGDDFVETEIVLTDDI----AGCVI 303
+ + + R G FV T++ T I A +I
Sbjct: 299 ERDSRVDSR-VQPSGVSIYSQDPVLSARHSPGLARVSSAFV-TQVSQTMQIPFSYAEDII 356
Query: 304 GKAGSRLLEIRQISGAQINIHTGTESHKKMFHIQGCQEAVSLAQYLI 350
G G+ + IR+ SGA I I + I+G V A+ LI
Sbjct: 357 GVEGANIAYIRRRSGATITIKESPHPDQITVEIKGTTSQVQTAEQLI 403
>UNIPROTKB|K7GM69 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000034893 Uniprot:K7GM69
Length = 202
Score = 93 (37.8 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 121 PQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPD 179
P+ + L IP G++IGK G IK + +GA++++A P +ER+V + G P+
Sbjct: 20 PEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPE 78
Score = 67 (28.6 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 25/86 (29%), Positives = 42/86 (48%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI---HTGTESHKKMFHIQG---CQE 341
+E I + AG VIGK G + E++ ++ A++ + T E+ + + I G +
Sbjct: 105 LEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIGHFFASQ 164
Query: 342 AVSLAQYLINMCIELQKNNTTNTSDN 367
A ++Y I + QK NT TS N
Sbjct: 165 AKQCSEYHITQ--KEQKRNT-QTSLN 187
>UNIPROTKB|F8VTZ0 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01020805
ProteinModelPortal:F8VTZ0 SMR:F8VTZ0 Ensembl:ENST00000550192
ArrayExpress:F8VTZ0 Bgee:F8VTZ0 Uniprot:F8VTZ0
Length = 64
Score = 105 (42.0 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 15 ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
+T+R L H E+ +IG G V+++R+ESGA+I+I++G CP+RI
Sbjct: 14 LTIRLLMHGK----EVGSIIGKKGESVKKMREESGARINISEGNCPERI 58
>UNIPROTKB|Q96I24 [details] [associations]
symbol:FUBP3 "Far upstream element-binding protein 3"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0010628 "positive regulation of gene expression"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:U69127 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0003677 EMBL:CH471090
GO:GO:0006351 GO:GO:0003723 EMBL:AL359092 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210 EMBL:AK295155
EMBL:AL353695 EMBL:BC001325 EMBL:BC007874 EMBL:BC137338
EMBL:BC137340 IPI:IPI00063245 IPI:IPI00377261 RefSeq:NP_003925.1
UniGene:Hs.673029 UniGene:Hs.98751 ProteinModelPortal:Q96I24
SMR:Q96I24 DIP:DIP-50124N IntAct:Q96I24 STRING:Q96I24
PhosphoSite:Q96I24 DMDM:37078499 REPRODUCTION-2DPAGE:IPI00377261
PaxDb:Q96I24 PRIDE:Q96I24 DNASU:8939 Ensembl:ENST00000319725
Ensembl:ENST00000372376 GeneID:8939 KEGG:hsa:8939 UCSC:uc004bzr.1
UCSC:uc010mzd.1 CTD:8939 GeneCards:GC09P133454 HGNC:HGNC:4005
HPA:HPA047658 MIM:603536 neXtProt:NX_Q96I24 PharmGKB:PA28421
InParanoid:Q96I24 OMA:AAPHQNT OrthoDB:EOG4X97H1 PhylomeDB:Q96I24
GenomeRNAi:8939 NextBio:33614 ArrayExpress:Q96I24 Bgee:Q96I24
CleanEx:HS_FUBP3 Genevestigator:Q96I24 GermOnline:ENSG00000107164
Uniprot:Q96I24
Length = 572
Score = 84 (34.6 bits), Expect = 4.5e-05, Sum P(3) = 4.5e-05
Identities = 24/93 (25%), Positives = 51/93 (54%)
Query: 103 CRSLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASD 162
CR+ +H N +++ S +Q +++IPA+ G +IG+GG IK +++ +G + + D
Sbjct: 148 CRNGPGFH---NDIDSNST--IQ-EILIPASKVGLVIGRGGETIKQLQERTGVKMVMIQD 201
Query: 163 -MLPMSTERIVTVHGNPDTISQAIYQICLVLIE 194
LP ++ + + G+ + QA + ++ E
Sbjct: 202 GPLPTGADKPLRITGDAFKVQQAREMVLEIIRE 234
Score = 75 (31.5 bits), Expect = 4.5e-05, Sum P(3) = 4.5e-05
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 297 DIAGCVIGKAGSRLLEIRQISGAQINIHTG----TESHKKMFHIQGCQEAVSLAQYLIN 351
D G VIGK G + I Q SGA + + ++ + + F I+G + + +A+ LI+
Sbjct: 364 DKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNSDPNLRRFTIRGVPQQIEVARQLID 422
Score = 74 (31.1 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAI 185
+++ +P G +IG+ G IK I++ +G +Q D +S ER V G PD A
Sbjct: 256 IEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD-GISPERAAQVMGPPDRCQHAA 314
Query: 186 YQIC-LVL 192
+ I L+L
Sbjct: 315 HIISELIL 322
Score = 59 (25.8 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 17/59 (28%), Positives = 33/59 (55%)
Query: 4 NGDG-KIDEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAK-ISITDGACP 60
NG G D D+ T++ + + +++ +IG GG +++L++ +G K + I DG P
Sbjct: 150 NGPGFHNDIDSNSTIQEIL---IPASKVGLVIGRGGETIKQLQERTGVKMVMIQDGPLP 205
Score = 55 (24.4 bits), Expect = 4.5e-05, Sum P(3) = 4.5e-05
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 30 ISCLIGPGGCIVRRLRKESGAKISITD--GACPDR 62
+ +IG GG + R++ ESG KI I P+R
Sbjct: 89 VGFIIGRGGEQISRIQAESGCKIQIASESSGIPER 123
>RGD|1591989 [details] [associations]
symbol:LOC367191 "similar to Poly(rC)-binding protein 2
(Alpha-CP2) (Putative heterogeneous nuclear ribonucleoprotein X)
(hnRNP X) (CTBP) (CBP)" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1591989 GO:GO:0003723 IPI:IPI00555167
Ensembl:ENSRNOT00000037460 OMA:KARITIS Uniprot:D3ZTH3
Length = 107
Score = 102 (41.0 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 15 ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRI 63
+T+R L H E+ +IG G V+++R+ESGA+I+I++G CP RI
Sbjct: 14 LTIRLLMHGK----EVGSIIGKKGESVKKMREESGARINISEGNCPKRI 58
>UNIPROTKB|F1NV59 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 EMBL:AADN02012752 IPI:IPI00579990
Ensembl:ENSGALT00000014526 ArrayExpress:F1NV59 Uniprot:F1NV59
Length = 632
Score = 85 (35.0 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 22/69 (31%), Positives = 42/69 (60%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMST--ERIVTVHGNPDTISQA 184
+++IPA+ G +IGKGG IK +++ +G + + D P +T ++ + + G+P + QA
Sbjct: 186 EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDG-PQNTGADKPLRITGDPYKVQQA 244
Query: 185 IYQICLVLI 193
++ L LI
Sbjct: 245 -KEMVLELI 252
Score = 63 (27.2 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 30 ISCLIGPGGCIVRRLRKESGAKISIT--DGACPDR 62
+ +IG GG + R+++ESG KI I G P+R
Sbjct: 109 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPER 143
Score = 61 (26.5 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 20/71 (28%), Positives = 32/71 (45%)
Query: 289 ETEIVLTDDIAGCVIGKA-----GSRLLEIRQISGAQINIHTG----TESHKKMFHIQGC 339
E ++ G +IGK G + I Q SGA+I + + + KMF I+G
Sbjct: 360 EFNFIVPTGKTGLIIGKGNVSLRGETIKSISQQSGARIELQRNPPPNADPNMKMFTIRGT 419
Query: 340 QEAVSLAQYLI 350
+ + A+ LI
Sbjct: 420 PQQIDYARQLI 430
>UNIPROTKB|F6Y140 [details] [associations]
symbol:KHSRP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
OMA:QASGNCH GeneTree:ENSGT00650000093048 EMBL:AAEX03012495
Ensembl:ENSCAFT00000029641 Uniprot:F6Y140
Length = 602
Score = 87 (35.7 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 24/87 (27%), Positives = 46/87 (52%)
Query: 109 YHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASD-MLPMS 167
+H N N +N + Q +++IPA G +IGKGG IK +++ +G + + D +
Sbjct: 79 FHDNANGGQNGTVQ----EIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTN 134
Query: 168 TERIVTVHGNPDTISQAIYQICLVLIE 194
++ + + G+P + QA + +L E
Sbjct: 135 VDKPLRIIGDPYKVQQACEMVMDILRE 161
Score = 62 (26.9 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 300 GCVIGKAGSRLLEIRQISGAQINIHT----GTESHKKMFHIQGCQEAVSLAQYLINMCIE 355
G VIG+ G + I Q +GA + I + + K+F I+G + + A+ LI IE
Sbjct: 293 GLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIE 352
Score = 59 (25.8 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 30 ISCLIGPGGCIVRRLRKESGAKISIT--DGACPDR 62
+ +IG GG + +++++SG K+ I+ G P+R
Sbjct: 12 VGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPER 46
Score = 59 (25.8 bits), Expect = 0.00038, Sum P(3) = 0.00038
Identities = 18/71 (25%), Positives = 33/71 (46%)
Query: 300 GCVIGKAGSRLLEIRQISGAQINIHT--GTESHKKMFHIQGCQEAVSLAQYLINMCIELQ 357
G VIG++G + +I+ +G +I GT +K+ HI G + A +IN ++
Sbjct: 191 GVVIGRSGEMIKKIQNDAGVRIQFKQDDGT-GPEKIAHIMGPPDRCEHAARIINDLLQSL 249
Query: 358 KNNTTNTSDNP 368
++ P
Sbjct: 250 RSGPPGPPGGP 260
>UNIPROTKB|F1MX51 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GO:GO:0010628 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:DAAA02008247
EMBL:DAAA02008246 IPI:IPI00698543 Ensembl:ENSBTAT00000011751
Uniprot:F1MX51
Length = 602
Score = 75 (31.5 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 289 ETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTG----TESHKKMFHIQGCQEAVS 344
E ++ G +IGK G + I Q SGA+I + + + K+F I+G + +
Sbjct: 335 EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQID 394
Query: 345 LAQYLI 350
A+ LI
Sbjct: 395 YARQLI 400
Score = 71 (30.1 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMST--ERIVTVHGNPDTISQA 184
+++IPA+ G L+GKGG I + + +G + + D P +T ++ + + G+P + QA
Sbjct: 147 EIMIPASKAG-LVGKGGETINNSEERAGVKMVMIQDG-PQNTGADKPLRITGDPYKVQQA 204
Query: 185 IYQICLVLI 193
++ L LI
Sbjct: 205 -KEMVLELI 212
Score = 66 (28.3 bits), Expect = 0.00061, Sum P(3) = 0.00061
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 130 IPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQA 184
IP G +IG+ G IK I++ +G +Q D + +RI + G PD A
Sbjct: 239 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD-GTTPDRIAQITGPPDRCQHA 292
Score = 63 (27.2 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 30 ISCLIGPGGCIVRRLRKESGAKISIT--DGACPDR 62
+ +IG GG + R+++ESG KI I G P+R
Sbjct: 72 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPER 106
>UNIPROTKB|F1NWN2 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00530000063171 EMBL:AADN02024285
EMBL:AADN02024286 IPI:IPI00599184 Ensembl:ENSGALT00000010541
Uniprot:F1NWN2
Length = 551
Score = 98 (39.6 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 121 PQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPD 179
P+ + L IP G++IGK G IK + +GA++++A P +TER+V + G P+
Sbjct: 376 PEQEVVNLFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEGPDATERMVIITGPPE 434
Score = 92 (37.4 bits), Expect = 0.00049, Sum P(3) = 0.00049
Identities = 27/94 (28%), Positives = 46/94 (48%)
Query: 103 CRSLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVA-- 160
CR + D + + E S + + LK++ + G LIGK G +K I +G + ++
Sbjct: 228 CRMILDI-MQKEADETKSAEEIPLKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISPL 286
Query: 161 SDMLPMSTERIVTVHGNPDTISQAIYQICLVLIE 194
D+ + ER +TV G+ + S A +I L E
Sbjct: 287 QDLTIYNPERTITVKGSTEACSNAEVEIMKKLRE 320
Score = 67 (28.6 bits), Expect = 0.00049, Sum P(3) = 0.00049
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 289 ETEIV---LTDDIAGCVIGKAGSRLLEIRQISGAQINIHT--GTESHKKMFHIQGCQEAV 343
E E+V + G +IGK G + ++ + +GA I I G ++ ++M I G EA
Sbjct: 377 EQEVVNLFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEGPDATERMVIITGPPEAQ 436
Query: 344 SLAQ 347
AQ
Sbjct: 437 FKAQ 440
Score = 57 (25.1 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI---HTGTESHKKMFHIQGCQEAVS 344
+E I + AG VIGK G + E++ ++ A++ + T E+ + + I G A
Sbjct: 461 LEAHIKVPSFAAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVKIIGHFFASQ 520
Query: 345 LAQYLINMCIELQK 358
AQ I ++ K
Sbjct: 521 TAQRKIREIVQQVK 534
Score = 50 (22.7 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 12/41 (29%), Positives = 26/41 (63%)
Query: 15 ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISIT 55
I ++ L H+S+ + LIG G ++++ +++G KI+I+
Sbjct: 248 IPLKILAHNSL----VGRLIGKEGRNLKKIEQDTGTKITIS 284
Score = 43 (20.2 bits), Expect = 0.00049, Sum P(3) = 0.00049
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 30 ISCLIGPGGCIVRRLRKESGAKISI 54
+ +IG G ++ L K++ +K+ I
Sbjct: 178 VGAIIGKEGLTIKNLTKQTQSKVDI 202
>UNIPROTKB|O73932 [details] [associations]
symbol:igf2bp3-a "Insulin-like growth factor 2 mRNA-binding
protein 3-A" species:8355 "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS;IDA] [GO:0030529 "ribonucleoprotein complex"
evidence=IPI] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005783 GO:GO:0007275 GO:GO:0005634 GO:GO:0006417
GO:GO:0006355 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003730 GO:GO:0030529 GO:GO:0051028
EMBL:AF055923 EMBL:AF064634 EMBL:BC170196 EMBL:BC170224
EMBL:BC170477 EMBL:BC170479 RefSeq:NP_001081752.1 UniGene:Xl.319
HSSP:Q9Y6M1 ProteinModelPortal:O73932 SMR:O73932 IntAct:O73932
PRIDE:O73932 GeneID:394293 KEGG:xla:394293 CTD:394293
Xenbase:XB-GENE-864935 HOVERGEN:HBG052725 KO:K13197 Uniprot:O73932
Length = 594
Score = 88 (36.0 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 121 PQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPD 179
P+ + L IPA G++IGK G IK + +GA++++A P + R+V + G P+
Sbjct: 416 PESETVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAPAEGPDAKLRMVIITGPPE 474
Score = 73 (30.8 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 26/91 (28%), Positives = 43/91 (47%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI---HTGTESHKKMFHIQGCQEAVS 344
+ET I + AG VIGK G + E++ ++ A++ + T E+ + + I G A
Sbjct: 501 LETHIKVPSYAAGRVIGKGGKTVNELQNLTSAEVVVPRDQTPDENDEVVVKITGHFYASQ 560
Query: 345 LAQYLINMCI-----ELQKNNTTNTSDNPEP 370
LAQ I + + Q+ T S P+P
Sbjct: 561 LAQRKIQEILAQVRRQQQQQQKTVQSGQPQP 591
Score = 46 (21.3 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 30 ISCLIGPGGCIVRRLRKESGAKISI 54
+ +IG G +R + K++ +KI I
Sbjct: 217 VGAIIGKEGATIRNITKQTQSKIDI 241
Score = 45 (20.9 bits), Expect = 0.00028, Sum P(3) = 0.00028
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 6 DGKIDEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISIT 55
D K E+ I ++ L H+ N + LIG G ++++ +++ KI+I+
Sbjct: 280 DTKFTEE--IPLKILAHN----NFVGRLIGKEGRNLKKIEQDTDTKITIS 323
>UNIPROTKB|F1NVW3 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0044430 "cytoskeletal part" evidence=IEA] [GO:0048027 "mRNA
5'-UTR binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171
GO:GO:0044430 OMA:KQQEQKH EMBL:AADN02024285 EMBL:AADN02024286
IPI:IPI00581668 Ensembl:ENSGALT00000022629 Uniprot:F1NVW3
Length = 573
Score = 98 (39.6 bits), Expect = 0.00025, Sum P(3) = 0.00025
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 121 PQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPD 179
P+ + L IP G++IGK G IK + +GA++++A P +TER+V + G P+
Sbjct: 398 PEQEVVNLFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEGPDATERMVIITGPPE 456
Score = 92 (37.4 bits), Expect = 0.00057, Sum P(3) = 0.00057
Identities = 27/94 (28%), Positives = 46/94 (48%)
Query: 103 CRSLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVA-- 160
CR + D + + E S + + LK++ + G LIGK G +K I +G + ++
Sbjct: 228 CRMILDI-MQKEADETKSAEEIPLKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISPL 286
Query: 161 SDMLPMSTERIVTVHGNPDTISQAIYQICLVLIE 194
D+ + ER +TV G+ + S A +I L E
Sbjct: 287 QDLTIYNPERTITVKGSTEACSNAEVEIMKKLRE 320
Score = 67 (28.6 bits), Expect = 0.00057, Sum P(3) = 0.00057
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 289 ETEIV---LTDDIAGCVIGKAGSRLLEIRQISGAQINIHT--GTESHKKMFHIQGCQEAV 343
E E+V + G +IGK G + ++ + +GA I I G ++ ++M I G EA
Sbjct: 399 EQEVVNLFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEGPDATERMVIITGPPEAQ 458
Query: 344 SLAQ 347
AQ
Sbjct: 459 FKAQ 462
Score = 57 (25.1 bits), Expect = 0.00025, Sum P(3) = 0.00025
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI---HTGTESHKKMFHIQGCQEAVS 344
+E I + AG VIGK G + E++ ++ A++ + T E+ + + I G A
Sbjct: 483 LEAHIKVPSFAAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVKIIGHFFASQ 542
Query: 345 LAQYLINMCIELQK 358
AQ I ++ K
Sbjct: 543 TAQRKIREIVQQVK 556
Score = 50 (22.7 bits), Expect = 0.00025, Sum P(3) = 0.00025
Identities = 12/41 (29%), Positives = 26/41 (63%)
Query: 15 ITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISIT 55
I ++ L H+S+ + LIG G ++++ +++G KI+I+
Sbjct: 248 IPLKILAHNSL----VGRLIGKEGRNLKKIEQDTGTKITIS 284
Score = 43 (20.2 bits), Expect = 0.00057, Sum P(3) = 0.00057
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 30 ISCLIGPGGCIVRRLRKESGAKISI 54
+ +IG G ++ L K++ +K+ I
Sbjct: 178 VGAIIGKEGLTIKNLTKQTQSKVDI 202
>UNIPROTKB|Q5ZLP8 [details] [associations]
symbol:IGF2BP3 "Insulin-like growth factor 2 mRNA-binding
protein 3" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 HSSP:Q9Y6M1 HOVERGEN:HBG052725
KO:K13197 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG405S0T EMBL:AJ719686
IPI:IPI00594271 RefSeq:NP_001006359.1 UniGene:Gga.4039
ProteinModelPortal:Q5ZLP8 SMR:Q5ZLP8 PRIDE:Q5ZLP8
Ensembl:ENSGALT00000017840 GeneID:420617 KEGG:gga:420617 CTD:10643
InParanoid:Q5ZLP8 OMA:EAQDTKF NextBio:20823504 Uniprot:Q5ZLP8
Length = 584
Score = 88 (36.0 bits), Expect = 0.00027, Sum P(3) = 0.00027
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 121 PQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPD 179
P+ + L IPA G++IGK G IK + +GA++++A P + R+V + G P+
Sbjct: 407 PESETVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAPAEGPDAKLRMVIITGPPE 465
Score = 72 (30.4 bits), Expect = 0.00027, Sum P(3) = 0.00027
Identities = 24/90 (26%), Positives = 41/90 (45%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI---HTGTESHKKMFHIQG----CQ 340
+E I + AG VIGK G + E++ ++ A++ + T E+ + + I G CQ
Sbjct: 492 LEAHIKVPSYAAGRVIGKGGKTVNELQNLTSAEVVVPRDQTPDENDQVVVKITGHFYACQ 551
Query: 341 EAVSLAQYLINMCIELQKNNTTNTSDNPEP 370
A Q ++ Q+ T S P+P
Sbjct: 552 LAQRKIQEILAQVRRQQQQQKTLQSGQPQP 581
Score = 46 (21.3 bits), Expect = 0.00027, Sum P(3) = 0.00027
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 30 ISCLIGPGGCIVRRLRKESGAKISI 54
+ +IG G +R + K++ +KI I
Sbjct: 208 VGAIIGKEGATIRNITKQTQSKIDI 232
Score = 45 (20.9 bits), Expect = 0.00033, Sum P(3) = 0.00033
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 6 DGKIDEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISIT 55
D K E+ I ++ L H+ N + LIG G ++++ +++ KI+I+
Sbjct: 271 DTKFTEE--IPLKILAHN----NFVGRLIGKEGRNLKKIEQDTDTKITIS 314
>ZFIN|ZDB-GENE-060929-1258 [details] [associations]
symbol:igf2bp1 "insulin-like growth factor 2 mRNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=ISS] [GO:0070937 "CRD-mediated mRNA
stability complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322
SMART:SM00360 ZFIN:ZDB-GENE-060929-1258 GO:GO:0005634 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0070937
HOVERGEN:HBG052725 CTD:10642 eggNOG:NOG249985 HOGENOM:HOG000000675
OrthoDB:EOG405S0T EMBL:BC124196 IPI:IPI00800578
RefSeq:NP_001070027.1 UniGene:Dr.81351 ProteinModelPortal:Q08CK7
SMR:Q08CK7 PRIDE:Q08CK7 GeneID:558182 KEGG:dre:558182
InParanoid:Q08CK7 NextBio:20882359 Uniprot:Q08CK7
Length = 598
Score = 91 (37.1 bits), Expect = 0.00027, Sum P(3) = 0.00027
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 130 IPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPD 179
IPA G+LIGK G IK + +GA++++A P S R+V V G P+
Sbjct: 414 IPAQAVGALIGKKGQHIKQLSRFAGASIKIAPAEAPDSKMRMVIVTGPPE 463
Score = 70 (29.7 bits), Expect = 0.00027, Sum P(3) = 0.00027
Identities = 26/90 (28%), Positives = 40/90 (44%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI---HTGTESHKKMFHIQGCQEAVS 344
+ET I + AG VIGK G + E++ ++ A++ + T E + + I G A
Sbjct: 490 LETHIKVAAAAAGRVIGKGGKTVNELQNLTAAEVVVPREQTPDEHDQVIVKIIGHFYASQ 549
Query: 345 LAQYLINMCI----ELQKNNTTNTSDNPEP 370
LAQ I + + QK T P P
Sbjct: 550 LAQRKIRDILTQVKQQQKGGGMGTPQGPHP 579
Score = 45 (20.9 bits), Expect = 0.00027, Sum P(3) = 0.00027
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 30 ISCLIGPGGCIVRRLRKESGAKISI 54
+ +IG G +R + K++ +KI +
Sbjct: 210 VGAIIGKEGATIRNITKQTQSKIDV 234
>UNIPROTKB|F1MHR6 [details] [associations]
symbol:LOC505564 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
InterPro:IPR015096 Pfam:PF09005 OMA:QASGNCH
GeneTree:ENSGT00650000093048 EMBL:DAAA02019565 EMBL:DAAA02019566
IPI:IPI00701919 Ensembl:ENSBTAT00000027991 Uniprot:F1MHR6
Length = 708
Score = 87 (35.7 bits), Expect = 0.00034, Sum P(3) = 0.00034
Identities = 24/87 (27%), Positives = 46/87 (52%)
Query: 109 YHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASD-MLPMS 167
+H N N +N + Q +++IPA G +IGKGG IK +++ +G + + D +
Sbjct: 184 FHDNANGGQNGTVQ----EIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTN 239
Query: 168 TERIVTVHGNPDTISQAIYQICLVLIE 194
++ + + G+P + QA + +L E
Sbjct: 240 VDKPLRIIGDPYKVQQACEMVMDILRE 266
Score = 62 (26.9 bits), Expect = 0.00034, Sum P(3) = 0.00034
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 300 GCVIGKAGSRLLEIRQISGAQINIHT----GTESHKKMFHIQGCQEAVSLAQYLINMCIE 355
G VIG+ G + I Q +GA + I + + K+F I+G + + A+ LI IE
Sbjct: 398 GLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIE 457
Score = 59 (25.8 bits), Expect = 0.00034, Sum P(3) = 0.00034
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 30 ISCLIGPGGCIVRRLRKESGAKISIT--DGACPDR 62
+ +IG GG + +++++SG K+ I+ G P+R
Sbjct: 117 VGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPER 151
Score = 59 (25.8 bits), Expect = 0.00066, Sum P(3) = 0.00066
Identities = 18/71 (25%), Positives = 33/71 (46%)
Query: 300 GCVIGKAGSRLLEIRQISGAQINIHT--GTESHKKMFHIQGCQEAVSLAQYLINMCIELQ 357
G VIG++G + +I+ +G +I GT +K+ HI G + A +IN ++
Sbjct: 296 GVVIGRSGEMIKKIQNDAGVRIQFKQDDGT-GPEKIAHIMGPPDRCEHAARIINDLLQSL 354
Query: 358 KNNTTNTSDNP 368
++ P
Sbjct: 355 RSGPPGPPGGP 365
>UNIPROTKB|Q92945 [details] [associations]
symbol:KHSRP "Far upstream element-binding protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005654 GO:GO:0006355 GO:GO:0003677
GO:GO:0006397 GO:GO:0006351 GO:GO:0003723 GO:GO:0051028
GO:GO:0000375 eggNOG:NOG300923 HOGENOM:HOG000231552
HOVERGEN:HBG000625 KO:K13210 InterPro:IPR015096 Pfam:PF09005
CTD:8570 EMBL:U94832 EMBL:AC011491 EMBL:AC011539 EMBL:BC085004
EMBL:AF093747 EMBL:AF093745 EMBL:AF093748 EMBL:U69126 EMBL:AB209662
IPI:IPI00479786 IPI:IPI00855957 RefSeq:NP_003676.2
UniGene:Hs.727344 PDB:2HH2 PDB:2HH3 PDB:2JVZ PDB:2OPU PDB:2OPV
PDB:4B8T PDBsum:2HH2 PDBsum:2HH3 PDBsum:2JVZ PDBsum:2OPU
PDBsum:2OPV PDBsum:4B8T ProteinModelPortal:Q92945 SMR:Q92945
DIP:DIP-48484N IntAct:Q92945 STRING:Q92945 PhosphoSite:Q92945
DMDM:160380711 REPRODUCTION-2DPAGE:Q92945 PaxDb:Q92945 PRIDE:Q92945
Ensembl:ENST00000398148 GeneID:8570 KEGG:hsa:8570 UCSC:uc002mer.4
GeneCards:GC19M006413 H-InvDB:HIX0040083 HGNC:HGNC:6316
HPA:HPA034739 MIM:603445 neXtProt:NX_Q92945 PharmGKB:PA30097
InParanoid:Q92945 OMA:QASGNCH PhylomeDB:Q92945 ChEMBL:CHEMBL1795105
ChiTaRS:KHSRP EvolutionaryTrace:Q92945 GenomeRNAi:8570
NextBio:32149 PMAP-CutDB:Q92945 ArrayExpress:Q92945 Bgee:Q92945
CleanEx:HS_KHSRP Genevestigator:Q92945 GermOnline:ENSG00000088247
Uniprot:Q92945
Length = 711
Score = 87 (35.7 bits), Expect = 0.00034, Sum P(3) = 0.00034
Identities = 24/87 (27%), Positives = 46/87 (52%)
Query: 109 YHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASD-MLPMS 167
+H N N +N + Q +++IPA G +IGKGG IK +++ +G + + D +
Sbjct: 223 FHDNANGGQNGTVQ----EIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTN 278
Query: 168 TERIVTVHGNPDTISQAIYQICLVLIE 194
++ + + G+P + QA + +L E
Sbjct: 279 VDKPLRIIGDPYKVQQACEMVMDILRE 305
Score = 62 (26.9 bits), Expect = 0.00034, Sum P(3) = 0.00034
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 300 GCVIGKAGSRLLEIRQISGAQINIHT----GTESHKKMFHIQGCQEAVSLAQYLINMCIE 355
G VIG+ G + I Q +GA + I + + K+F I+G + + A+ LI IE
Sbjct: 437 GLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIE 496
Score = 59 (25.8 bits), Expect = 0.00034, Sum P(3) = 0.00034
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 30 ISCLIGPGGCIVRRLRKESGAKISIT--DGACPDR 62
+ +IG GG + +++++SG K+ I+ G P+R
Sbjct: 156 VGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPER 190
Score = 59 (25.8 bits), Expect = 0.00067, Sum P(3) = 0.00067
Identities = 18/71 (25%), Positives = 33/71 (46%)
Query: 300 GCVIGKAGSRLLEIRQISGAQINIHT--GTESHKKMFHIQGCQEAVSLAQYLINMCIELQ 357
G VIG++G + +I+ +G +I GT +K+ HI G + A +IN ++
Sbjct: 335 GVVIGRSGEMIKKIQNDAGVRIQFKQDDGT-GPEKIAHIMGPPDRCEHAARIINDLLQSL 393
Query: 358 KNNTTNTSDNP 368
++ P
Sbjct: 394 RSGPPGPPGGP 404
>UNIPROTKB|K7GQW0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 Gene3D:3.30.70.330
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000035698 Uniprot:K7GQW0
Length = 477
Score = 93 (37.8 bits), Expect = 0.00035, Sum P(3) = 0.00035
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 121 PQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPD 179
P+ + L IP G++IGK G IK + +GA++++A P +ER+V + G P+
Sbjct: 303 PEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPE 361
Score = 60 (26.2 bits), Expect = 0.00035, Sum P(3) = 0.00035
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI---HTGTESHKKMFHIQGCQEAVS 344
+E I + AG VIGK G + E++ ++ A++ + T E+ + + I G A
Sbjct: 388 LEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIGHFFASQ 447
Query: 345 LAQYLINMCIELQK 358
AQ I ++ K
Sbjct: 448 TAQRKIREIVQQVK 461
Score = 48 (22.0 bits), Expect = 0.00035, Sum P(3) = 0.00035
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 8 KIDEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISIT 55
K+ E+ I ++ L H+ + + LIG G ++++ E+G KI+I+
Sbjct: 191 KLAEE--IPLKILAHNGL----VGRLIGKEGRNLKKIEHETGTKITIS 232
>RGD|621828 [details] [associations]
symbol:Khsrp "KH-type splicing regulatory protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO] [GO:0030425 "dendrite" evidence=IDA] [GO:0043025
"neuronal cell body" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621828 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0008380 GO:GO:0003677 GO:GO:0043025 GO:GO:0030425
GO:GO:0006397 GO:GO:0006351 GO:GO:0003730 GO:GO:0051028
HOVERGEN:HBG000625 KO:K13210 InterPro:IPR015096 Pfam:PF09005
CTD:8570 EMBL:AF308818 IPI:IPI00200920 RefSeq:NP_598286.1
UniGene:Rn.92643 ProteinModelPortal:Q99PF5 SMR:Q99PF5
PhosphoSite:Q99PF5 REPRODUCTION-2DPAGE:Q99PF5 PRIDE:Q99PF5
GeneID:171137 KEGG:rno:171137 NextBio:621918 Genevestigator:Q99PF5
Uniprot:Q99PF5
Length = 721
Score = 87 (35.7 bits), Expect = 0.00036, Sum P(3) = 0.00036
Identities = 24/87 (27%), Positives = 46/87 (52%)
Query: 109 YHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASD-MLPMS 167
+H N N +N + Q +++IPA G +IGKGG IK +++ +G + + D +
Sbjct: 224 FHDNANGGQNGTVQ----EIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTN 279
Query: 168 TERIVTVHGNPDTISQAIYQICLVLIE 194
++ + + G+P + QA + +L E
Sbjct: 280 VDKPLRIIGDPYKVQQACEMVMDILRE 306
Score = 62 (26.9 bits), Expect = 0.00036, Sum P(3) = 0.00036
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 300 GCVIGKAGSRLLEIRQISGAQINIHT----GTESHKKMFHIQGCQEAVSLAQYLINMCIE 355
G VIG+ G + I Q +GA + I + + K+F I+G + + A+ LI IE
Sbjct: 438 GLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFVIRGSPQQIDHAKQLIEEKIE 497
Score = 59 (25.8 bits), Expect = 0.00036, Sum P(3) = 0.00036
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 30 ISCLIGPGGCIVRRLRKESGAKISIT--DGACPDR 62
+ +IG GG + +++++SG K+ I+ G P+R
Sbjct: 157 VGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPER 191
Score = 58 (25.5 bits), Expect = 0.00088, Sum P(3) = 0.00088
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 300 GCVIGKAGSRLLEIRQISGAQINIHT--GTESHKKMFHIQGCQEAVSLAQYLIN 351
G VIG++G + +I+ +G +I GT +K+ HI G + A +IN
Sbjct: 336 GVVIGRSGEMIKKIQNDAGVRIQFKQDDGT-GPEKIAHIMGPPDRCEHAARIIN 388
>UNIPROTKB|E2QVT3 [details] [associations]
symbol:KHSRP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
Ensembl:ENSCAFT00000029641 Uniprot:E2QVT3
Length = 743
Score = 87 (35.7 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 24/87 (27%), Positives = 46/87 (52%)
Query: 109 YHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASD-MLPMS 167
+H N N +N + Q +++IPA G +IGKGG IK +++ +G + + D +
Sbjct: 220 FHDNANGGQNGTVQ----EIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTN 275
Query: 168 TERIVTVHGNPDTISQAIYQICLVLIE 194
++ + + G+P + QA + +L E
Sbjct: 276 VDKPLRIIGDPYKVQQACEMVMDILRE 302
Score = 62 (26.9 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 300 GCVIGKAGSRLLEIRQISGAQINIHT----GTESHKKMFHIQGCQEAVSLAQYLINMCIE 355
G VIG+ G + I Q +GA + I + + K+F I+G + + A+ LI IE
Sbjct: 434 GLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIE 493
Score = 59 (25.8 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 30 ISCLIGPGGCIVRRLRKESGAKISIT--DGACPDR 62
+ +IG GG + +++++SG K+ I+ G P+R
Sbjct: 153 VGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPER 187
Score = 59 (25.8 bits), Expect = 0.00078, Sum P(3) = 0.00078
Identities = 18/71 (25%), Positives = 33/71 (46%)
Query: 300 GCVIGKAGSRLLEIRQISGAQINIHT--GTESHKKMFHIQGCQEAVSLAQYLINMCIELQ 357
G VIG++G + +I+ +G +I GT +K+ HI G + A +IN ++
Sbjct: 332 GVVIGRSGEMIKKIQNDAGVRIQFKQDDGT-GPEKIAHIMGPPDRCEHAARIINDLLQSL 390
Query: 358 KNNTTNTSDNP 368
++ P
Sbjct: 391 RSGPPGPPGGP 401
>UNIPROTKB|F1SBT6 [details] [associations]
symbol:KHSRP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
InterPro:IPR015096 Pfam:PF09005 OMA:QASGNCH
GeneTree:ENSGT00650000093048 EMBL:CU929921
Ensembl:ENSSSCT00000014785 Uniprot:F1SBT6
Length = 747
Score = 87 (35.7 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 24/87 (27%), Positives = 46/87 (52%)
Query: 109 YHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASD-MLPMS 167
+H N N +N + Q +++IPA G +IGKGG IK +++ +G + + D +
Sbjct: 223 FHDNANGGQNGTVQ----EIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTN 278
Query: 168 TERIVTVHGNPDTISQAIYQICLVLIE 194
++ + + G+P + QA + +L E
Sbjct: 279 VDKPLRIIGDPYKVQQACEMVMDILRE 305
Score = 62 (26.9 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 300 GCVIGKAGSRLLEIRQISGAQINIHT----GTESHKKMFHIQGCQEAVSLAQYLINMCIE 355
G VIG+ G + I Q +GA + I + + K+F I+G + + A+ LI IE
Sbjct: 437 GLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIE 496
Score = 59 (25.8 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 30 ISCLIGPGGCIVRRLRKESGAKISIT--DGACPDR 62
+ +IG GG + +++++SG K+ I+ G P+R
Sbjct: 156 VGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPER 190
Score = 59 (25.8 bits), Expect = 0.00079, Sum P(3) = 0.00079
Identities = 18/71 (25%), Positives = 33/71 (46%)
Query: 300 GCVIGKAGSRLLEIRQISGAQINIHT--GTESHKKMFHIQGCQEAVSLAQYLINMCIELQ 357
G VIG++G + +I+ +G +I GT +K+ HI G + A +IN ++
Sbjct: 335 GVVIGRSGEMIKKIQNDAGVRIQFKQDDGT-GPEKIAHIMGPPDRCEHAARIINDLLQSL 393
Query: 358 KNNTTNTSDNP 368
++ P
Sbjct: 394 RSGPPGPPGGP 404
>MGI|MGI:1336214 [details] [associations]
symbol:Khsrp "KH-type splicing regulatory protein"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0030425 "dendrite"
evidence=ISO] [GO:0043025 "neuronal cell body" evidence=ISO]
[GO:0051028 "mRNA transport" evidence=IEA] Reactome:REACT_78136
Reactome:REACT_88316 InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS00178 PROSITE:PS50084 SMART:SM00322
MGI:MGI:1336214 GO:GO:0005829 GO:GO:0005634 GO:GO:0006355
GO:GO:0008380 GO:GO:0003677 GO:GO:0006397 GO:GO:0006351
GO:GO:0003723 GO:GO:0051028 GO:GO:0010494 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 CTD:8570 OMA:QASGNCH EMBL:AK156541
EMBL:CT571247 EMBL:BC064454 EMBL:BC108414 IPI:IPI00462934
RefSeq:NP_034743.3 UniGene:Mm.34296 HSSP:Q91WJ8
ProteinModelPortal:Q3U0V1 SMR:Q3U0V1 IntAct:Q3U0V1 STRING:Q3U0V1
PhosphoSite:Q3U0V1 PaxDb:Q3U0V1 PRIDE:Q3U0V1 DNASU:16549
Ensembl:ENSMUST00000007814 GeneID:16549 KEGG:mmu:16549
UCSC:uc008ddr.2 GeneTree:ENSGT00650000093048 InParanoid:Q3U0V1
OrthoDB:EOG451DQX NextBio:290019 Bgee:Q3U0V1 CleanEx:MM_KHSRP
Genevestigator:Q3U0V1 Uniprot:Q3U0V1
Length = 748
Score = 87 (35.7 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 24/87 (27%), Positives = 46/87 (52%)
Query: 109 YHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASD-MLPMS 167
+H N N +N + Q +++IPA G +IGKGG IK +++ +G + + D +
Sbjct: 224 FHDNANGGQNGTVQ----EIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTN 279
Query: 168 TERIVTVHGNPDTISQAIYQICLVLIE 194
++ + + G+P + QA + +L E
Sbjct: 280 VDKPLRIIGDPYKVQQACEMVMDILRE 306
Score = 62 (26.9 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 300 GCVIGKAGSRLLEIRQISGAQINIHT----GTESHKKMFHIQGCQEAVSLAQYLINMCIE 355
G VIG+ G + I Q +GA + I + + K+F I+G + + A+ LI IE
Sbjct: 438 GLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFVIRGSPQQIDHAKQLIEEKIE 497
Score = 59 (25.8 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 30 ISCLIGPGGCIVRRLRKESGAKISIT--DGACPDR 62
+ +IG GG + +++++SG K+ I+ G P+R
Sbjct: 157 VGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPER 191
Score = 58 (25.5 bits), Expect = 0.0010, Sum P(3) = 0.0010
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 300 GCVIGKAGSRLLEIRQISGAQINIHT--GTESHKKMFHIQGCQEAVSLAQYLIN 351
G VIG++G + +I+ +G +I GT +K+ HI G + A +IN
Sbjct: 336 GVVIGRSGEMIKKIQNDAGVRIQFKQDDGT-GPEKIAHIMGPPDRCEHAARIIN 388
>UNIPROTKB|K7GQ87 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000035397 Uniprot:K7GQ87
Length = 498
Score = 93 (37.8 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 121 PQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPD 179
P+ + L IP G++IGK G IK + +GA++++A P +ER+V + G P+
Sbjct: 324 PEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPE 382
Score = 60 (26.2 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI---HTGTESHKKMFHIQGCQEAVS 344
+E I + AG VIGK G + E++ ++ A++ + T E+ + + I G A
Sbjct: 409 LEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIGHFFASQ 468
Query: 345 LAQYLINMCIELQK 358
AQ I ++ K
Sbjct: 469 TAQRKIREIVQQVK 482
Score = 48 (22.0 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 8 KIDEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISIT 55
K+ E+ I ++ L H+ + + LIG G ++++ E+G KI+I+
Sbjct: 169 KLAEE--IPLKILAHNGL----VGRLIGKEGRNLKKIEHETGTKITIS 210
>UNIPROTKB|K7GKD3 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 Gene3D:3.30.70.330
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000033522 Uniprot:K7GKD3
Length = 520
Score = 93 (37.8 bits), Expect = 0.00049, Sum P(3) = 0.00049
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 121 PQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPD 179
P+ + L IP G++IGK G IK + +GA++++A P +ER+V + G P+
Sbjct: 346 PEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPE 404
Score = 60 (26.2 bits), Expect = 0.00049, Sum P(3) = 0.00049
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI---HTGTESHKKMFHIQGCQEAVS 344
+E I + AG VIGK G + E++ ++ A++ + T E+ + + I G A
Sbjct: 431 LEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIGHFFASQ 490
Query: 345 LAQYLINMCIELQK 358
AQ I ++ K
Sbjct: 491 TAQRKIREIVQQVK 504
Score = 48 (22.0 bits), Expect = 0.00049, Sum P(3) = 0.00049
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 8 KIDEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISIT 55
K+ E+ I ++ L H+ + + LIG G ++++ E+G KI+I+
Sbjct: 191 KLAEE--IPLKILAHNGL----VGRLIGKEGRNLKKIEHETGTKITIS 232
>UNIPROTKB|F1SFK0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0044430
"cytoskeletal part" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171
GO:GO:0044430 OMA:KQQEQKH EMBL:CU582974 Ensembl:ENSSSCT00000012907
Uniprot:F1SFK0
Length = 524
Score = 93 (37.8 bits), Expect = 0.00050, Sum P(3) = 0.00050
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 121 PQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPD 179
P+ + L IP G++IGK G IK + +GA++++A P +ER+V + G P+
Sbjct: 350 PEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPE 408
Score = 60 (26.2 bits), Expect = 0.00050, Sum P(3) = 0.00050
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI---HTGTESHKKMFHIQGCQEAVS 344
+E I + AG VIGK G + E++ ++ A++ + T E+ + + I G A
Sbjct: 435 LEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIGHFFASQ 494
Query: 345 LAQYLINMCIELQK 358
AQ I ++ K
Sbjct: 495 TAQRKIREIVQQVK 508
Score = 48 (22.0 bits), Expect = 0.00050, Sum P(3) = 0.00050
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 8 KIDEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISIT 55
K+ E+ I ++ L H+ + + LIG G ++++ E+G KI+I+
Sbjct: 195 KLAEE--IPLKILAHNGL----VGRLIGKEGRNLKKIEHETGTKITIS 236
>UNIPROTKB|F1PDI8 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00530000063171 CTD:10644 OMA:KQQEQKH
EMBL:AAEX03017290 EMBL:AAEX03017291 EMBL:AAEX03017292
RefSeq:XP_535832.3 Ensembl:ENSCAFT00000021148 GeneID:478662
KEGG:cfa:478662 Uniprot:F1PDI8
Length = 531
Score = 93 (37.8 bits), Expect = 0.00052, Sum P(3) = 0.00052
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 121 PQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPD 179
P+ + L IP G++IGK G IK + +GA++++A P +ER+V + G P+
Sbjct: 357 PEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPE 415
Score = 60 (26.2 bits), Expect = 0.00052, Sum P(3) = 0.00052
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI---HTGTESHKKMFHIQGCQEAVS 344
+E I + AG VIGK G + E++ ++ A++ + T E+ + + I G A
Sbjct: 442 LEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIGHFFASQ 501
Query: 345 LAQYLINMCIELQK 358
AQ I ++ K
Sbjct: 502 TAQRKIREIVQQVK 515
Score = 48 (22.0 bits), Expect = 0.00052, Sum P(3) = 0.00052
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 8 KIDEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISIT 55
K+ E+ I ++ L H+ + + LIG G ++++ E+G KI+I+
Sbjct: 202 KLAEE--IPLKILAHNGL----VGRLIGKEGRNLKKIEHETGTKITIS 243
>UNIPROTKB|O57526 [details] [associations]
symbol:igf2bp3-b "Insulin-like growth factor 2 mRNA-binding
protein 3-B" species:8355 "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005783 GO:GO:0007275 GO:GO:0005634 GO:GO:0006417
GO:GO:0006355 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003730 GO:GO:0051028 HSSP:Q9Y6M1
HOVERGEN:HBG052725 KO:K13197 EMBL:AF042353 EMBL:AF064633
EMBL:BC057700 RefSeq:NP_001079932.1 UniGene:Xl.240
ProteinModelPortal:O57526 SMR:O57526 GeneID:379623 KEGG:xla:379623
CTD:379623 Xenbase:XB-GENE-6255198 Uniprot:O57526
Length = 593
Score = 88 (36.0 bits), Expect = 0.00055, Sum P(3) = 0.00055
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 121 PQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPD 179
P+ + L IPA G++IGK G IK + +GA++++A P + R+V + G P+
Sbjct: 415 PESETVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAPAEGPDAKLRMVIITGPPE 473
Score = 69 (29.3 bits), Expect = 0.00055, Sum P(3) = 0.00055
Identities = 25/91 (27%), Positives = 42/91 (46%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI---HTGTESHKKMFHIQGCQEAVS 344
+E I + AG VIGK G + E++ ++ A++ + T E+ + + I G A
Sbjct: 500 LEAHIKVPSYAAGRVIGKGGKTVNELQNLTSAEVVVPRDQTPDENDQVVVKITGHFYASQ 559
Query: 345 LAQYLINMCI-----ELQKNNTTNTSDNPEP 370
LAQ I + + Q+ T S P+P
Sbjct: 560 LAQRKIQEILAQVRRQQQQQQKTAQSGQPQP 590
Score = 46 (21.3 bits), Expect = 0.00055, Sum P(3) = 0.00055
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 30 ISCLIGPGGCIVRRLRKESGAKISI 54
+ +IG G +R + K++ +KI I
Sbjct: 216 VGAIIGKEGATIRNITKQTQSKIDI 240
Score = 45 (20.9 bits), Expect = 0.00069, Sum P(3) = 0.00069
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 6 DGKIDEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISIT 55
D K E+ I ++ L H+ N + LIG G ++++ +++ KI+I+
Sbjct: 279 DTKFTEE--IPLKILAHN----NFVGRLIGKEGRNLKKIEQDTDTKITIS 322
>UNIPROTKB|Q5RB68 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005856 "cytoskeleton"
evidence=ISS] [GO:0048027 "mRNA 5'-UTR binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 HOVERGEN:HBG052725 CTD:10644
GO:GO:0044430 EMBL:CR858786 RefSeq:NP_001125573.1 UniGene:Pab.13543
ProteinModelPortal:Q5RB68 SMR:Q5RB68 PRIDE:Q5RB68 GeneID:100172487
KEGG:pon:100172487 InParanoid:Q5RB68 Uniprot:Q5RB68
Length = 556
Score = 93 (37.8 bits), Expect = 0.00062, Sum P(3) = 0.00062
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 121 PQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPD 179
P+ + L IP G++IGK G IK + +GA++++A P +ER+V + G P+
Sbjct: 382 PEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPE 440
Score = 60 (26.2 bits), Expect = 0.00062, Sum P(3) = 0.00062
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI---HTGTESHKKMFHIQGCQEAVS 344
+E I + AG VIGK G + E++ ++ A++ + T E+ + + I G A
Sbjct: 467 LEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIGHFFASQ 526
Query: 345 LAQYLINMCIELQK 358
AQ I ++ K
Sbjct: 527 TAQRKIREIVQQVK 540
Score = 48 (22.0 bits), Expect = 0.00062, Sum P(3) = 0.00062
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 8 KIDEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISIT 55
K+ E+ I ++ L H+ + + LIG G ++++ E+G KI+I+
Sbjct: 270 KLAEE--IPLKILAHNGL----VGRLIGKEGRNLKKIEHETGTKITIS 311
>ZFIN|ZDB-GENE-030131-4357 [details] [associations]
symbol:khsrp "KH-type splicing regulatory protein"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-030131-4357 GO:GO:0003723
InterPro:IPR015096 Pfam:PF09005 OMA:QASGNCH
GeneTree:ENSGT00650000093048 EMBL:AL929150 IPI:IPI00482681
Ensembl:ENSDART00000038330 ArrayExpress:F1QXP8 Bgee:F1QXP8
Uniprot:F1QXP8
Length = 666
Score = 79 (32.9 bits), Expect = 0.00077, Sum P(4) = 0.00077
Identities = 20/69 (28%), Positives = 38/69 (55%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLP-MSTERIVTVHGNPDTISQAI 185
++VIPA G +IGKGG IK +++ +G + + D + ++ + + G+P + QA
Sbjct: 196 EMVIPAGKAGLIIGKGGETIKQLQERAGVKMILIQDASQGPNMDKPLRIIGDPYKVQQAR 255
Query: 186 YQICLVLIE 194
+ +L E
Sbjct: 256 EMVQEILRE 264
Score = 63 (27.2 bits), Expect = 0.00079, Sum P(3) = 0.00079
Identities = 23/81 (28%), Positives = 35/81 (43%)
Query: 279 GGKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHT----GTESHKKMF 334
GG G E + G VIG+ G + I Q +GA + I + + K+F
Sbjct: 394 GGNWGGPPGSEMTFSIPAHKCGLVIGRGGENVKAINQQTGAFVEISRQPPPNGDPNFKLF 453
Query: 335 HIQGCQEAVSLAQYLINMCIE 355
I+G + + A+ LI IE
Sbjct: 454 TIRGSPQQIDHAKQLIEDKIE 474
Score = 62 (26.9 bits), Expect = 0.00077, Sum P(4) = 0.00077
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 30 ISCLIGPGGCIVRRLRKESGAKISIT--DGACPDR 62
+ +IG GG + +++++SG K+ I G PDR
Sbjct: 118 VGLIIGRGGEQINKIQQDSGCKVQIAPDSGGLPDR 152
Score = 62 (26.9 bits), Expect = 0.00077, Sum P(4) = 0.00077
Identities = 22/78 (28%), Positives = 35/78 (44%)
Query: 279 GGKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHT--GTESHKKMFHI 336
GG G E+ + G VIG++G + +I+ +G +I GT K+ HI
Sbjct: 285 GGGGGGGGGGGIEVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKPDDGT-GPDKIAHI 343
Query: 337 QG----CQEAVSLAQYLI 350
G C+ A S+ L+
Sbjct: 344 MGPPDRCEHAASIINELL 361
Score = 37 (18.1 bits), Expect = 0.00077, Sum P(4) = 0.00077
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 397 PGSMVTLGGLSE---LLANIAASNVKSTVQTTGAY 428
PGS +T + L+ NVK+ Q TGA+
Sbjct: 401 PGSEMTFSIPAHKCGLVIGRGGENVKAINQQTGAF 435
>ZFIN|ZDB-GENE-060503-536 [details] [associations]
symbol:igf2bp2b "insulin-like growth factor 2 mRNA
binding protein 2b" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-060503-536
GO:GO:0003723 EMBL:CR382370 GeneTree:ENSGT00530000063171
EMBL:BX004885 IPI:IPI00919570 PRIDE:F1QN87
Ensembl:ENSDART00000088166 Bgee:F1QN87 Uniprot:F1QN87
Length = 446
Score = 98 (39.6 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 21/71 (29%), Positives = 39/71 (54%)
Query: 122 QPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTI 181
Q L L++++P G++IGK G IK+I + + V + +TE+ +T+H + +
Sbjct: 58 QELPLRILVPTQFVGAIIGKEGLTIKNITKQTQSKVDIHRKENAGATEKAITIHSSKEGC 117
Query: 182 SQAIYQICLVL 192
SQA I ++
Sbjct: 118 SQACRMILEIM 128
Score = 61 (26.5 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 30/129 (23%), Positives = 57/129 (44%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE----SHKKMFHIQGCQEAV 343
V +I+ + + G +IGK G L +I Q +G +I I + + ++ ++G E
Sbjct: 141 VPLKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISALQDLTVYNQERTISVRGGVEEC 200
Query: 344 SLAQ-YLINMCIELQKNNTTNTSDNPEP-ADLDAAISAFMTASVNSSLIEKPTPHPGSMV 401
A+ ++ E +N+ + + A L+ +SA S S++ + GS+
Sbjct: 201 CKAEGEIMKKLREAHENDVASVNQQTNMMAGLN--LSALGIFSSGMSVLPPASGLRGSLS 258
Query: 402 TLGGLSELL 410
T S LL
Sbjct: 259 TPANYSPLL 267
Score = 60 (26.2 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 20/64 (31%), Positives = 29/64 (45%)
Query: 289 ETEIV---LTDDIAGCVIGKAGSRLLEIRQISGAQINIHT--GTESHKKMFHIQGCQEAV 343
E E+V + G +IGK G + E+ +GA I I + ++M I G EA
Sbjct: 271 EQEVVYLFIPTPAVGALIGKKGQHIKELAHFAGASIKIAAPESPDEPERMVIITGPPEAQ 330
Query: 344 SLAQ 347
AQ
Sbjct: 331 FKAQ 334
>UNIPROTKB|E1BFI4 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0044430
"cytoskeletal part" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171 CTD:10644
GO:GO:0044430 OMA:KQQEQKH EMBL:DAAA02001852 EMBL:DAAA02001853
EMBL:DAAA02001854 EMBL:DAAA02001855 EMBL:DAAA02001856
IPI:IPI00721408 RefSeq:NP_001179433.1 UniGene:Bt.33805
ProteinModelPortal:E1BFI4 Ensembl:ENSBTAT00000036032 GeneID:519028
KEGG:bta:519028 NextBio:20872792 Uniprot:E1BFI4
Length = 599
Score = 93 (37.8 bits), Expect = 0.00081, Sum P(3) = 0.00081
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 121 PQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPD 179
P+ + L IP G++IGK G IK + +GA++++A P +ER+V + G P+
Sbjct: 425 PEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPE 483
Score = 60 (26.2 bits), Expect = 0.00081, Sum P(3) = 0.00081
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI---HTGTESHKKMFHIQGCQEAVS 344
+E I + AG VIGK G + E++ ++ A++ + T E+ + + I G A
Sbjct: 510 LEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIGHFFASQ 569
Query: 345 LAQYLINMCIELQK 358
AQ I ++ K
Sbjct: 570 TAQRKIREIVQQVK 583
Score = 48 (22.0 bits), Expect = 0.00081, Sum P(3) = 0.00081
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 8 KIDEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISIT 55
K+ E+ I ++ L H+ + + LIG G ++++ E+G KI+I+
Sbjct: 270 KLAEE--IPLKILAHNGL----VGRLIGKEGRNLKKIEHETGTKITIS 311
>UNIPROTKB|Q9Y6M1 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0009653
"anatomical structure morphogenesis" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005856 "cytoskeleton"
evidence=IDA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=ISS]
[GO:0045182 "translation regulator activity" evidence=ISS]
[GO:0042035 "regulation of cytokine biosynthetic process"
evidence=IC] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 Reactome:REACT_116125 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027
GO:GO:0003730 GO:GO:0042035 GO:GO:0009653 HOVERGEN:HBG052725
eggNOG:NOG249985 HOGENOM:HOG000000675 EMBL:AF057352 EMBL:EU408701
EMBL:EU408702 EMBL:EU408703 EMBL:AC016961 EMBL:AC108670
EMBL:BC021290 IPI:IPI00179713 IPI:IPI00180983 IPI:IPI00743914
IPI:IPI00922068 IPI:IPI00953576 RefSeq:NP_001007226.1
RefSeq:NP_006539.3 UniGene:Hs.35354 PDB:2CQH PDBsum:2CQH
ProteinModelPortal:Q9Y6M1 SMR:Q9Y6M1 IntAct:Q9Y6M1 STRING:Q9Y6M1
PhosphoSite:Q9Y6M1 DMDM:224471831 PaxDb:Q9Y6M1 PRIDE:Q9Y6M1
DNASU:10644 Ensembl:ENST00000346192 Ensembl:ENST00000382199
Ensembl:ENST00000421047 GeneID:10644 KEGG:hsa:10644 UCSC:uc003fpo.3
UCSC:uc003fpp.3 UCSC:uc010hyi.3 UCSC:uc010hyj.3 UCSC:uc010hyl.3
CTD:10644 GeneCards:GC03M185361 HGNC:HGNC:28867 HPA:CAB017126
MIM:608289 neXtProt:NX_Q9Y6M1 PharmGKB:PA128394577
OrthoDB:EOG4FBHSJ ChiTaRS:IGF2BP2 EvolutionaryTrace:Q9Y6M1
GenomeRNAi:10644 NextBio:40455 ArrayExpress:Q9Y6M1 Bgee:Q9Y6M1
CleanEx:HS_IGF2BP2 Genevestigator:Q9Y6M1 GermOnline:ENSG00000073792
GO:GO:0044430 Uniprot:Q9Y6M1
Length = 599
Score = 93 (37.8 bits), Expect = 0.00081, Sum P(3) = 0.00081
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 121 PQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPD 179
P+ + L IP G++IGK G IK + +GA++++A P +ER+V + G P+
Sbjct: 425 PEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPE 483
Score = 60 (26.2 bits), Expect = 0.00081, Sum P(3) = 0.00081
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI---HTGTESHKKMFHIQGCQEAVS 344
+E I + AG VIGK G + E++ ++ A++ + T E+ + + I G A
Sbjct: 510 LEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIGHFFASQ 569
Query: 345 LAQYLINMCIELQK 358
AQ I ++ K
Sbjct: 570 TAQRKIREIVQQVK 583
Score = 48 (22.0 bits), Expect = 0.00081, Sum P(3) = 0.00081
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 8 KIDEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISIT 55
K+ E+ I ++ L H+ + + LIG G ++++ E+G KI+I+
Sbjct: 270 KLAEE--IPLKILAHNGL----VGRLIGKEGRNLKKIEHETGTKITIS 311
>UNIPROTKB|F8W930 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC016961 EMBL:AC108670
IPI:IPI00953576 HGNC:HGNC:28867 ChiTaRS:IGF2BP2 OMA:KQQEQKH
ProteinModelPortal:F8W930 SMR:F8W930 PRIDE:F8W930
Ensembl:ENST00000457616 UCSC:uc003fpq.3 ArrayExpress:F8W930
Bgee:F8W930 Uniprot:F8W930
Length = 605
Score = 93 (37.8 bits), Expect = 0.00083, Sum P(3) = 0.00083
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 121 PQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPD 179
P+ + L IP G++IGK G IK + +GA++++A P +ER+V + G P+
Sbjct: 431 PEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPE 489
Score = 60 (26.2 bits), Expect = 0.00083, Sum P(3) = 0.00083
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI---HTGTESHKKMFHIQGCQEAVS 344
+E I + AG VIGK G + E++ ++ A++ + T E+ + + I G A
Sbjct: 516 LEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIGHFFASQ 575
Query: 345 LAQYLINMCIELQK 358
AQ I ++ K
Sbjct: 576 TAQRKIREIVQQVK 589
Score = 48 (22.0 bits), Expect = 0.00083, Sum P(3) = 0.00083
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 8 KIDEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISIT 55
K+ E+ I ++ L H+ + + LIG G ++++ E+G KI+I+
Sbjct: 276 KLAEE--IPLKILAHNGL----VGRLIGKEGRNLKKIEHETGTKITIS 317
>MGI|MGI:1890358 [details] [associations]
symbol:Igf2bp2 "insulin-like growth factor 2 mRNA binding
protein 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005856
"cytoskeleton" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
MGI:MGI:1890358 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
HOVERGEN:HBG052725 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 CTD:10644 OrthoDB:EOG4FBHSJ ChiTaRS:IGF2BP2
GO:GO:0044430 EMBL:AY531659 EMBL:AK170531 EMBL:CT009567
IPI:IPI00338748 IPI:IPI00761863 RefSeq:NP_898850.2
UniGene:Mm.489442 ProteinModelPortal:Q5SF07 SMR:Q5SF07
STRING:Q5SF07 PhosphoSite:Q5SF07 REPRODUCTION-2DPAGE:Q5SF07
PaxDb:Q5SF07 PRIDE:Q5SF07 Ensembl:ENSMUST00000100052 GeneID:319765
KEGG:mmu:319765 UCSC:uc007yrz.1 UCSC:uc007ysb.1 InParanoid:A6X8Z4
OMA:KQQEQKH NextBio:395368 Bgee:Q5SF07 Genevestigator:Q5SF07
GermOnline:ENSMUSG00000033581 Uniprot:Q5SF07
Length = 592
Score = 95 (38.5 bits), Expect = 0.00094, Sum P(3) = 0.00094
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 121 PQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPD 179
P+ + L IP G++IGK G IK + +GA++++A P +ER+V + G P+
Sbjct: 418 PEQETVSLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPE 476
Score = 60 (26.2 bits), Expect = 0.00094, Sum P(3) = 0.00094
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI---HTGTESHKKMFHIQGCQEAVS 344
+E I + AG VIGK G + E++ ++ A++ + T E+ + + I G A
Sbjct: 503 LEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIGHFFASQ 562
Query: 345 LAQYLINMCIELQK 358
AQ I ++ K
Sbjct: 563 TAQRKIREIVQQVK 576
Score = 45 (20.9 bits), Expect = 0.00094, Sum P(3) = 0.00094
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 8 KIDEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISIT 55
K+ E+ + ++ L H+ + LIG G ++++ E+G KI+I+
Sbjct: 263 KLAEE--VPLKILAHNGF----VGRLIGKEGRNLKKIEHETGTKITIS 304
>RGD|1305614 [details] [associations]
symbol:Igf2bp2 "insulin-like growth factor 2 mRNA binding
protein 2" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0005856
"cytoskeleton" evidence=ISO] [GO:0044430 "cytoskeletal part"
evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 RGD:1305614
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 EMBL:CH473999
GeneTree:ENSGT00530000063171 CTD:10644 OrthoDB:EOG4FBHSJ
GO:GO:0044430 IPI:IPI00559516 RefSeq:NP_001257527.1
UniGene:Rn.17318 Ensembl:ENSRNOT00000036958 GeneID:303824
KEGG:rno:303824 UCSC:RGD:1305614 NextBio:652153 Uniprot:D3ZWZ6
Length = 592
Score = 95 (38.5 bits), Expect = 0.00094, Sum P(3) = 0.00094
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 121 PQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPD 179
P+ + L IP G++IGK G IK + +GA++++A P +ER+V + G P+
Sbjct: 418 PEQETVSLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPE 476
Score = 60 (26.2 bits), Expect = 0.00094, Sum P(3) = 0.00094
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI---HTGTESHKKMFHIQGCQEAVS 344
+E I + AG VIGK G + E++ ++ A++ + T E+ + + I G A
Sbjct: 503 LEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIGHFFASQ 562
Query: 345 LAQYLINMCIELQK 358
AQ I ++ K
Sbjct: 563 TAQRKIREIVQQVK 576
Score = 45 (20.9 bits), Expect = 0.00094, Sum P(3) = 0.00094
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 8 KIDEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISIT 55
K+ E+ + ++ L H+ + LIG G ++++ E+G KI+I+
Sbjct: 263 KLAEE--VPLKILAHNGF----VGRLIGKEGRNLKKIEHETGTKITIS 304
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.135 0.398 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 433 400 0.00098 117 3 11 22 0.41 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 194
No. of states in DFA: 612 (65 KB)
Total size of DFA: 244 KB (2131 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:04
No. of threads or processors used: 24
Search cpu time: 31.78u 0.08s 31.86t Elapsed: 00:00:38
Total cpu time: 31.83u 0.08s 31.91t Elapsed: 00:00:42
Start: Thu Aug 15 14:24:20 2013 End: Thu Aug 15 14:25:02 2013
WARNINGS ISSUED: 1