RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11929
(433 letters)
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2,
KH3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 67.2 bits (164), Expect = 6e-15
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQV--ASDMLPMSTERIVTVHGNPDTISQ 183
+++ +P G+++GKGG + + ++L+GA +Q+ + LP + R VT+ G+P
Sbjct: 5 VEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQA 64
Query: 184 AIYQI 188
A Y I
Sbjct: 65 AQYLI 69
Score = 50.6 bits (121), Expect = 4e-09
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 290 TEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE----SHKKMFHIQGCQEAVSL 345
E+ + +++ G ++GK G L+E ++++GA+I I E + + I G A
Sbjct: 5 VEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQA 64
Query: 346 AQYLIN 351
AQYLI+
Sbjct: 65 AQYLIS 70
Score = 44.0 bits (104), Expect = 8e-07
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAKISITDG-----ACPDRIVTVSGSVDN 72
V N + ++G GG + ++ +GA+I I+ +R VT++GS
Sbjct: 9 VPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAA 61
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 66.7 bits (163), Expect = 9e-15
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 123 PLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTIS 182
L ++L++ GS+IGK G +K +R+ SGA + ++ P ERI+T+ G + I
Sbjct: 3 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCP---ERIITLAGPTNAIF 59
Query: 183 QAIYQICLVLIE 194
+A I L E
Sbjct: 60 KAFAMIIDKLEE 71
Score = 56.7 bits (137), Expect = 3e-11
Identities = 23/61 (37%), Positives = 41/61 (67%), Gaps = 4/61 (6%)
Query: 12 DTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRIVTVSGSVD 71
+ +T+R L H E+ +IG G V+++R+ESGA+I+I++G CP+RI+T++G +
Sbjct: 1 NVTLTIRLLMHGK----EVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTN 56
Query: 72 N 72
Sbjct: 57 A 57
Score = 50.5 bits (121), Expect = 5e-09
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTESHKKMFHIQGCQEAVSLAQ 347
+ +++ G +IGK G + ++R+ SGA+INI G +++ + G A+ A
Sbjct: 4 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-NCPERIITLAGPTNAIFKAF 62
Query: 348 YLINMCIE 355
+I +E
Sbjct: 63 AMIIDKLE 70
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 79
Score = 66.0 bits (161), Expect = 2e-14
Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 121 PQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDT 180
+ + +P G +IG+GG +I I+ SG +Q+ + ER + G P++
Sbjct: 5 RSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQI-APDSGGLPERSCMLTGTPES 63
Query: 181 ISQAIYQICLVLIEC 195
+ A + ++ +
Sbjct: 64 VQSAKRLLDQIVEKG 78
Score = 53.3 bits (128), Expect = 6e-10
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIH-TGTESHKKMFHIQGCQEAVSLA 346
+ E + D + G +IG+ G ++ I+Q SG +I I ++ + G E+V A
Sbjct: 8 MTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSA 67
Query: 347 QYLINMCIE 355
+ L++ +E
Sbjct: 68 KRLLDQIVE 76
Score = 49.8 bits (119), Expect = 1e-08
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 24 SVNVNEISCLIGPGGCIVRRLRKESGAKISI--TDGACPDRIVTVSGSVDN 72
V + +IG GG + R+++ESG KI I G P+R ++G+ ++
Sbjct: 13 KVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPES 63
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 84
Score = 64.1 bits (156), Expect = 1e-13
Identities = 13/64 (20%), Positives = 23/64 (35%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQA 184
+L + + + +IG+ G I IR N+Q + +T+ G A
Sbjct: 11 KLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKNTEAA 70
Query: 185 IYQI 188
I
Sbjct: 71 RDAI 74
Score = 43.3 bits (102), Expect = 2e-06
Identities = 12/74 (16%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIH--TGTESHKKMFHIQGCQEAVSL 345
+ + + +IG+ G+ + +IR I + I G ++
Sbjct: 10 FKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKNTEA 69
Query: 346 AQYLINMCI-ELQK 358
A+ I + EL++
Sbjct: 70 ARDAILRIVGELEQ 83
Score = 42.1 bits (99), Expect = 5e-06
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 24 SVNVNEISCLIGPGGCIVRRLRKESGAKISI---TDGACPDRIVTVSGSVDN 72
+V+ +IG G ++ ++R E I DG P +T++G N
Sbjct: 15 TVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKN 66
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP
{Human (Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 62.6 bits (152), Expect = 3e-13
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPM--STERIVTVHGNPDTIS 182
+ ++P G +IGKGG IK I SGA +++ + P ++ T+ G P I
Sbjct: 2 EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQID 61
Query: 183 QAIYQI 188
A I
Sbjct: 62 YARQLI 67
Score = 48.0 bits (114), Expect = 3e-08
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 289 ETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE----SHKKMFHIQGCQEAVS 344
E ++ G +IGK G + I Q SGA+I + + K+F I+G + +
Sbjct: 2 EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQID 61
Query: 345 LAQYLIN 351
A+ LI
Sbjct: 62 YARQLIE 68
Score = 42.6 bits (100), Expect = 3e-06
Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAKISI-----TDGACPDRIVTVSGSVDN 72
V + +IG GG ++ + ++SGA+I + + ++ T+ G+
Sbjct: 7 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQ 59
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 70
Score = 62.5 bits (152), Expect = 3e-13
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAI 185
+L IP G +IG+ G I +IR +SGA +++ ++ + S+ R VT+ G+ +IS A
Sbjct: 4 HELTIPNNLIGCIIGRQGANINEIRQMSGAQIKI-ANPVEGSSGRQVTITGSAASISLAQ 62
Query: 186 YQI 188
Y I
Sbjct: 63 YLI 65
Score = 50.6 bits (121), Expect = 4e-09
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 290 TEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQGCQEAVSLAQY 348
E+ + +++ GC+IG+ G+ + EIRQ+SGAQI I E S + I G ++SLAQY
Sbjct: 4 HELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQY 63
Query: 349 LIN 351
LIN
Sbjct: 64 LIN 66
Score = 44.4 bits (105), Expect = 7e-07
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 24 SVNVNEISCLIGPGGCIVRRLRKESGAKISITD--GACPDRIVTVSGSVDN 72
++ N I C+IG G + +R+ SGA+I I + R VT++GS +
Sbjct: 7 TIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAAS 57
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human
(Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 62.2 bits (151), Expect = 4e-13
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQA 184
+ + IP G +IG+ G IK I++ +G +Q D + ERI + G PD A
Sbjct: 4 MIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD-GTTPERIAQITGPPDRAQHA 62
Query: 185 IYQI 188
I
Sbjct: 63 AEII 66
Score = 48.7 bits (116), Expect = 2e-08
Identities = 12/66 (18%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 291 EIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE-SHKKMFHIQGCQEAVSLAQYL 349
++ + G VIG+ G + +I+ +G +I + +++ I G + A +
Sbjct: 6 DVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQHAAEI 65
Query: 350 INMCIE 355
I +
Sbjct: 66 ITDLLR 71
Score = 41.4 bits (97), Expect = 7e-06
Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAKI--SITDGACPDRIVTVSGSVDN 72
+ + +IG G ++++++ ++G +I DG P+RI ++G D
Sbjct: 9 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDR 58
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 61.9 bits (150), Expect = 9e-13
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 122 QPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPM-STERIVTVHGNPDT 180
P+ +L +P G +IG+GG I+ I SGA + + R++ + G
Sbjct: 13 TPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKE 72
Query: 181 ISQAIYQICLVLIE 194
++ A + I + E
Sbjct: 73 VAAAKHLILEKVSE 86
Score = 48.8 bits (116), Expect = 4e-08
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 278 SGGKDTGDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIH---TGTESHKKMF 334
S G T + V ++ + G +IG+ G + I + SGA+I GT ++
Sbjct: 5 SSGILTENTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLI 64
Query: 335 HIQGCQEAVSLAQYLINMCIE 355
I G Q+ V+ A++LI +
Sbjct: 65 KISGTQKEVAAAKHLILEKVS 85
Score = 46.1 bits (109), Expect = 4e-07
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 6 DGKIDEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACP----D 61
G + E+T + + V + +IG GG +R + K SGAKI+ +
Sbjct: 6 SGILTENTPVFEQLS----VPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLS 61
Query: 62 RIVTVSGSVDN 72
R++ +SG+
Sbjct: 62 RLIKISGTQKE 72
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 75
Score = 60.7 bits (147), Expect = 1e-12
Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 126 LKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAI 185
++ IP GS+IGKGG +IK IR SGA++++ + L S +RI+T+ G D I A
Sbjct: 6 TQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITITGTQDQIQNAQ 64
Query: 186 YQI 188
Y +
Sbjct: 65 YLL 67
Score = 52.6 bits (126), Expect = 9e-10
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIH-TGTESHKKMFHIQGCQEAVSLA 346
+ T++ + D+AG +IGK G R+ +IR SGA I I S ++ I G Q+ + A
Sbjct: 4 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 63
Query: 347 QYLINMCIE 355
QYL+ ++
Sbjct: 64 QYLLQNSVK 72
Score = 43.3 bits (102), Expect = 2e-06
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 24 SVNVNEISCLIGPGGCIVRRLRKESGAKISI--TDGACPDRIVTVSGSVDN 72
++ + +IG GG ++++R ESGA I I DRI+T++G+ D
Sbjct: 9 TIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQ 59
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 81
Score = 59.6 bits (144), Expect = 3e-12
Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 118 NCSPQPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDM-LPMSTERIVTVHG 176
P +++IPA+ G +IGKGG IK +++ +G + + D ++ + + G
Sbjct: 2 GDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITG 61
Query: 177 NPDTISQAIYQICLVLIE 194
+P + QA + ++ +
Sbjct: 62 DPYKVQQAKEMVLELIRD 79
Score = 45.7 bits (108), Expect = 3e-07
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 284 GDDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI---HTGTESHKKMFHIQGCQ 340
G EI++ AG VIGK G + ++++ +G ++ + K I G
Sbjct: 4 GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDP 63
Query: 341 EAVSLAQYLINMCIE 355
V A+ ++ I
Sbjct: 64 YKVQQAKEMVLELIR 78
Score = 39.9 bits (93), Expect = 3e-05
Identities = 9/52 (17%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAKISI----TDGACPDRIVTVSGSVDN 72
+ ++ +IG GG +++L++ +G K+ + D+ + ++G
Sbjct: 14 IPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYK 65
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 81
Score = 59.7 bits (145), Expect = 3e-12
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIY 186
+ IP H +IGK G K++D+ + +Q+ P + + G + I +A +
Sbjct: 13 TVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPR---PDDPSNQIKITGTKEGIEKARH 69
Query: 187 QI 188
++
Sbjct: 70 EV 71
Score = 48.2 bits (115), Expect = 4e-08
Identities = 9/49 (18%), Positives = 21/49 (42%)
Query: 24 SVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRIVTVSGSVDN 72
++ +IG G ++ L ++ KI I P + ++G+ +
Sbjct: 15 AIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGTKEG 63
Score = 46.6 bits (111), Expect = 1e-07
Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 285 DDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTESHKKMFHIQGCQEAVS 344
+ + + VIGK G +L ++ + +I I + I G +E +
Sbjct: 7 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIP-RPDDPSNQIKITGTKEGIE 65
Query: 345 LAQYLINMCIE 355
A++ + +
Sbjct: 66 KARHEVLLISA 76
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 58.3 bits (141), Expect = 2e-11
Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 123 PLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTIS 182
P+ +++ +P +IG+ G I+ + D N+ V + P I+ + G +
Sbjct: 9 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPA---PELQSDIIAITGLAANLD 65
Query: 183 QAIYQI 188
+A +
Sbjct: 66 RAKAGL 71
Score = 47.1 bits (112), Expect = 1e-07
Identities = 10/49 (20%), Positives = 19/49 (38%)
Query: 24 SVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRIVTVSGSVDN 72
V + +IG G +R++ E I + I+ ++G N
Sbjct: 15 EVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGLAAN 63
Score = 46.0 bits (109), Expect = 3e-07
Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Query: 288 VETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTESHKKMFHIQGCQEAVSLAQ 347
V E+ + D+ VIG+ GS + ++ I++ E + I G + A+
Sbjct: 10 VTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVP-APELQSDIIAITGLAANLDRAK 68
Query: 348 YLINMCI-ELQKNN 360
+ + ELQ
Sbjct: 69 AGLLERVKELQAEQ 82
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 54.4 bits (131), Expect = 2e-10
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIY 186
++ I LIGK G I I+D +V++ D ++ + G+P + QA
Sbjct: 8 EINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPD---SEKSNLIRIEGDPQGVQQAKR 64
Query: 187 QI 188
++
Sbjct: 65 EL 66
Score = 45.5 bits (108), Expect = 3e-07
Identities = 7/49 (14%), Positives = 19/49 (38%)
Query: 24 SVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRIVTVSGSVDN 72
+++ LIG G + R++ + + I + ++ + G
Sbjct: 10 NIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGDPQG 58
Score = 41.3 bits (97), Expect = 9e-06
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 285 DDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTESHKKMFHIQGCQEAVS 344
+ EI + +IGK+G+ + I+ + I +E + I+G + V
Sbjct: 2 NRMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSE-KSNLIRIEGDPQGVQ 60
Query: 345 LAQYLIN 351
A+ +
Sbjct: 61 QAKRELL 67
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 81
Score = 51.7 bits (124), Expect = 2e-09
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIY 186
+ + +IG G I+ I D +++ P VTV G P+ + +AI
Sbjct: 13 DVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPD--PNCVTVTGLPENVEEAID 70
Query: 187 QI 188
I
Sbjct: 71 HI 72
Score = 46.7 bits (111), Expect = 1e-07
Identities = 13/71 (18%), Positives = 21/71 (29%)
Query: 285 DDFVETEIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTESHKKMFHIQGCQEAVS 344
+ V ++ L + +IG G + +I I + G E V
Sbjct: 7 EQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGLPENVE 66
Query: 345 LAQYLINMCIE 355
A I E
Sbjct: 67 EAIDHILNLEE 77
Score = 37.1 bits (86), Expect = 3e-04
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 24 SVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPD-RIVTVSGSVDN 72
++ + +IG G +R++ E I PD VTV+G +N
Sbjct: 15 PLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGLPEN 64
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1,
ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 84
Score = 48.6 bits (116), Expect = 3e-08
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 130 IPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQIC 189
I +IGK G IK ++ + V + ++ V+G+ +S A I
Sbjct: 7 INPARVPRVIGKKGSMIKLLKSELDVQIVVGQN-------GLIWVNGDRRKVSIAEEAIY 59
Query: 190 LVLIE 194
L+ E
Sbjct: 60 LIEQE 64
Score = 41.6 bits (98), Expect = 8e-06
Identities = 9/49 (18%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 24 SVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRIVTVSGSVDN 72
++N + +IG G +++ L+ E +I + + ++ V+G
Sbjct: 6 AINPARVPRVIGKKGSMIKLLKSELDVQIVVGQ----NGLIWVNGDRRK 50
Score = 37.4 bits (87), Expect = 3e-04
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 300 GCVIGKAGSRLLEIRQISGAQINIHTGTESHKKMFHIQGCQEAVSLAQYLINMCIE 355
VIGK GS + ++ QI + + + G + VS+A+ I + +
Sbjct: 13 PRVIGKKGSMIKLLKSELDVQIVV-----GQNGLIWVNGDRRKVSIAEEAIYLIEQ 63
>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 82
Score = 47.9 bits (114), Expect = 4e-08
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQA 184
++++ IPA SLIG G I+ I + G V + + S V + G + +A
Sbjct: 11 EVEVSIPAKLHNSLIGTKGRLIRSIMEECG-GVHI-HFPVEGSGSDTVVIRGPSSDVEKA 68
Query: 185 IYQIC 189
Q+
Sbjct: 69 KKQLL 73
Score = 41.0 bits (96), Expect = 1e-05
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
Query: 285 DDFVETEIVLTDDIAGCVIGKAGSRLLEIRQIS-GAQINIHTGTESHKKMFHIQGCQEAV 343
+ E E+ + + +IG G + I + G I+ S I+G V
Sbjct: 7 ANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE-GSGSDTVVIRGPSSDV 65
Query: 344 SLAQYLINMCIE 355
A+ + E
Sbjct: 66 EKAKKQLLHLAE 77
Score = 39.8 bits (93), Expect = 3e-05
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 24 SVNVNEISCLIGPGGCIVRRLRKES-GAKISITDGACPDRIVTVSGSVDN 72
S+ + LIG G ++R + +E G I V + G +
Sbjct: 15 SIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPSSD 64
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide
phosphorylase/guanosine pentaphosphate synthase
(PNPase/GPSI), domain 6 {Streptomyces antibioticus
[TaxId: 1890]}
Length = 54
Score = 44.3 bits (105), Expect = 4e-07
Identities = 11/45 (24%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRIVTVSGS 69
+ V++I +IGP ++ ++++++GA+I+I D D + + +
Sbjct: 9 IPVDKIGEVIGPKRQMINQIQEDTGAEITIED----DGTIYIGAA 49
Score = 36.2 bits (84), Expect = 4e-04
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 123 PLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASD 162
P + + IP G +IG I I++ +GA + + D
Sbjct: 2 PRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIEDD 41
Score = 27.3 bits (61), Expect = 0.45
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 300 GCVIGKAGSRLLEIRQISGAQINI 323
G VIG + +I++ +GA+I I
Sbjct: 15 GEVIGPKRQMINQIQEDTGAEITI 38
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum
pernix [TaxId: 56636]}
Length = 84
Score = 40.2 bits (94), Expect = 3e-05
Identities = 7/38 (18%), Positives = 18/38 (47%)
Query: 125 QLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASD 162
++ + + G++IG G +I +G + V ++
Sbjct: 4 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTE 41
Score = 37.1 bits (86), Expect = 4e-04
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 24 SVNVNEISCLIGPGGCIVRRLRKESGAKISI 54
V + +IGP G + + + +G I++
Sbjct: 8 KVKPERLGAVIGPRGEVKAEIMRRTGTVITV 38
Score = 34.0 bits (78), Expect = 0.005
Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Query: 291 EIVLTDDIAGCVIGKAGSRLLEIRQISGAQINI-HTGTESHKKMFHIQGCQEAVSLAQYL 349
+ + + G VIG G EI + +G I + + + + A +
Sbjct: 6 YVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTENSMVIVEPEAEGIPPVNLMKAAEV 65
Query: 350 IN 351
+
Sbjct: 66 VK 67
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome
related protein 1, FXR1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 78
Score = 38.3 bits (89), Expect = 1e-04
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 291 EIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTESHKKMFHIQGC-QEAVSLAQYL 349
E V+ +D+ G IG GS + + R++ G + F I G +AV A+
Sbjct: 11 EFVVREDLMGLAIGTHGSNIQQARKVPGVTAIE---LDEDTGTFRIYGESADAVKKARGF 67
Query: 350 INMCIE 355
+ +
Sbjct: 68 LEFVED 73
Score = 37.6 bits (87), Expect = 2e-04
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 4/67 (5%)
Query: 122 QPLQLKLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTI 181
+ V+ G IG G I+ R + G + T + D +
Sbjct: 6 AAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDED----TGTFRIYGESADAV 61
Query: 182 SQAIYQI 188
+A +
Sbjct: 62 KKARGFL 68
Score = 35.6 bits (82), Expect = 0.001
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 25 VNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRIVTVSGS 69
V + + IG G +++ RK G D + G
Sbjct: 14 VREDLMGLAIGTHGSNIQQARKVPGVTAIELD--EDTGTFRIYGE 56
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein
1, ECR1 {Aeropyrum pernix [TaxId: 56636]}
Length = 87
Score = 37.4 bits (87), Expect = 2e-04
Identities = 5/46 (10%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 24 SVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRIVTVSGS 69
++ ++ +IG +++ L +++ KI + + + +
Sbjct: 6 EISPAKVPRVIGRKMSMLKTLEEKTECKIFVAR----NGRIHLECP 47
Score = 36.2 bits (84), Expect = 8e-04
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 130 IPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQI 188
I +IG+ +K + + + + VA + RI N D + A+ I
Sbjct: 7 ISPAKVPRVIGRKMSMLKTLEEKTECKIFVARN------GRIHLECPNEDLEAIAVMAI 59
Score = 26.2 bits (58), Expect = 2.6
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 302 VIGKAGSRLLEIRQISGAQINI 323
VIG+ S L + + + +I +
Sbjct: 15 VIGRKMSMLKTLEEKTECKIFV 36
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein
1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]}
Length = 69
Score = 35.9 bits (83), Expect = 7e-04
Identities = 6/46 (13%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Query: 24 SVNVNEISCLIGPGGCIVRRLRKESGAKISITDGACPDRIVTVSGS 69
+ ++ +IG + L +SG I + + + + +
Sbjct: 6 DIMPVKVPRVIGKNKSMYETLTSKSGCSIFVAN----NGRIWATCP 47
Score = 35.5 bits (82), Expect = 8e-04
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 6/59 (10%)
Query: 130 IPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQI 188
I +IGK + + SG ++ VA++ RI + + I I
Sbjct: 7 IMPVKVPRVIGKNKSMYETLTSKSGCSIFVANN------GRIWATCPSRFSEEILIEAI 59
Score = 26.2 bits (58), Expect = 1.5
Identities = 9/57 (15%), Positives = 16/57 (28%), Gaps = 6/57 (10%)
Query: 300 GCVIGKAGSRLLEIRQISGAQINIHTGTESHKKMFHIQGC-QEAVSLAQYLINMCIE 355
VIGK S + SG I + ++ + + + I
Sbjct: 13 PRVIGKNKSMYETLTSKSGCSIFV-----ANNGRIWATCPSRFSEEILIEAIRKIEN 64
>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 90
Score = 35.2 bits (81), Expect = 0.002
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Query: 127 KLVIPATHCGSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIY 186
+ P+ +IGK G + I V + E +T+ G + +S A
Sbjct: 24 SVAAPSWLHRFIIGKKGQNLAKITQQMP-KVHIEFTE----GEDKITLEGPTEDVSVAQE 78
Query: 187 QI 188
QI
Sbjct: 79 QI 80
Score = 30.6 bits (69), Expect = 0.084
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 285 DDFVETEIVLTDDIAGCVIGKAGSRLLEIRQ-ISGAQINIHTGTESHKKMFHIQGCQEAV 343
+ F + + + +IGK G L +I Q + I + ++G E V
Sbjct: 18 NSFTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEF----TEGEDKITLEGPTEDV 73
Query: 344 SLAQYLINMCI-ELQ 357
S+AQ I + +L
Sbjct: 74 SVAQEQIEGMVKDLI 88
Score = 26.7 bits (59), Expect = 1.6
Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 33 LIGPGGCIVRRLRKE-SGAKISITDGACPDRIVTVSGSVD 71
+IG G + ++ ++ I T+G + + V
Sbjct: 35 IIGKKGQNLAKITQQMPKVHIEFTEGEDKITLEGPTEDVS 74
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African
clawed frog (Xenopus laevis) [TaxId: 8355]}
Length = 134
Score = 34.8 bits (80), Expect = 0.006
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 26 NVNEISCLIGPGGCIVRRLRKESGAKISI 54
+ N + ++GP G ++L E+G KI +
Sbjct: 15 DFNFVGRILGPRGLTAKQLEAETGCKIMV 43
>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum
pernix [TaxId: 56636]}
Length = 104
Score = 33.5 bits (77), Expect = 0.010
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 8/59 (13%)
Query: 136 GSLIGKGGCKIKDIRDLSGANVQVASDMLPMSTERIVTVHGNPDTISQAIYQICLVLIE 194
G +IG+GG + I +++ + V V + G+ + A I ++
Sbjct: 25 GRIIGEGGRARRTIEEMTDTYINVGEY--------EVAIIGDYERAMAAKQAIEMLAEG 75
Score = 32.4 bits (74), Expect = 0.026
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 33 LIGPGGCIVRRLRKESGAKISITDGACPDRIVTVSGSVDN 72
+IG GG R + + + I++ + V + G +
Sbjct: 27 IIGEGGRARRTIEEMTDTYINVGEYE-----VAIIGDYER 61
Score = 32.4 bits (74), Expect = 0.027
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 297 DIAGCVIGKAGSRLLEIRQISGAQINIHTGTESHKKMFHIQGCQEAVSLAQYLINMCIE 355
I G +IG+ G I +++ IN+ I G E A+ I M E
Sbjct: 22 RIKGRIIGEGGRARRTIEEMTDTYINVGEYEV------AIIGDYERAMAAKQAIEMLAE 74
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 122
Score = 31.7 bits (72), Expect = 0.055
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 26 NVNEISCLIGPGGCIVRRLRKESGAKISI 54
+N + LIGP G ++ + KE AKI I
Sbjct: 16 EINFVGLLIGPRGNTLKNIEKECNAKIMI 44
>d2uubc1 d.52.3.1 (C:2-106) Ribosomal protein S3 N-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 105
Score = 29.0 bits (65), Expect = 0.37
Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 100 NFMCRSLEDYHINRNRMENCSPQPLQLKLVIPATHCGSLIGKGGCKI----KDIRDLSGA 155
+ + L + R +E + + + G +IG+GG +I +++ L+G
Sbjct: 40 GLLEKELYSAGLARVDIE---RAADNVAVTVHVAKPGVVIGRGGERIRVLREELAKLTGK 96
Query: 156 NVQV 159
NV +
Sbjct: 97 NVAL 100
>d1c7va_ a.39.1.5 (A:) Calcium vector protein {Amphioxus
(Branchiostoma lanceolatum) [TaxId: 7740]}
Length = 68
Score = 27.5 bits (61), Expect = 0.62
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 1 MDGNGDGKIDEDTLIT-MRCLFHSSVNVNEISCLI 34
D NGDG ID D M+ + + E+ +
Sbjct: 11 FDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAM 45
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 29.9 bits (65), Expect = 0.62
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 66 VSGSVDNSSTS-SVETGYPGHTLWVTSVDNVCTAYNFMCRSLEDYHINRNRMENC 119
+SGS D S + + H+ + S+DN + +N
Sbjct: 25 ISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEF 79
>d1ij5a_ a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-binding
protein LAV1-2) {Physarum polycephalum [TaxId: 5791]}
Length = 321
Score = 29.6 bits (65), Expect = 0.77
Identities = 3/23 (13%), Positives = 9/23 (39%), Gaps = 1/23 (4%)
Query: 1 MDGNGDGKIDEDTLIT-MRCLFH 22
+D + + + + +FH
Sbjct: 299 VDVDDSKSLSYQEFVMLVLLMFH 321
Score = 28.4 bits (62), Expect = 1.6
Identities = 5/34 (14%), Positives = 11/34 (32%)
Query: 1 MDGNGDGKIDEDTLITMRCLFHSSVNVNEISCLI 34
+G GK L + + ++ + L
Sbjct: 131 SAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLF 164
>d2asba3 d.52.3.1 (A:263-329) Transcription factor NusA, C-terminal
domains {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 67
Score = 27.3 bits (61), Expect = 0.78
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 291 EIVLTDDIAGCVIGKAGSRLLEIRQISGAQINIHTGTE 328
+V+ D IGK G +++G +I+I
Sbjct: 29 RVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAP 66
>d1nyaa_ a.39.1.5 (A:) Calerythrin {Saccharopolyspora erythraea
[TaxId: 1836]}
Length = 176
Score = 28.5 bits (62), Expect = 1.0
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 1 MDGNGDGKIDEDTLITMRCLFHSSVN 26
+D NG+G++ D L+T FH
Sbjct: 145 VDTNGNGELSLDELLTAVRDFHFGRL 170
>d1w7jb1 a.39.1.5 (B:11-149) Myosin Essential Chain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 139
Score = 28.4 bits (62), Expect = 1.1
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 1 MDGNGDGKIDEDTLITMRCLFHSSVNVNEISCLIG 35
D GDGKI + + E+ ++G
Sbjct: 9 FDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLG 43
>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues 331-440
{Human (Homo sapiens) [TaxId: 9606]}
Length = 142
Score = 27.9 bits (62), Expect = 1.5
Identities = 7/43 (16%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 87 LWVTSVDNVCTAYNFMCRSLEDYHINRNRMENCSPQPLQLKLV 129
W + Y + R L Y+ ++N + + + + V
Sbjct: 79 RWGKRKNKPKMNYEKLSRGLR-YYYDKNIIHKTAGKRYVYRFV 120
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 28.4 bits (62), Expect = 1.7
Identities = 24/186 (12%), Positives = 50/186 (26%), Gaps = 7/186 (3%)
Query: 238 VAGKKQPHPLAGLAVLGIEGIGSTSLTPAALAALSGSRVKSGGKDTGDDFVETEIVLTDD 297
+ GKK + G G G TSL A G+ + D F + +
Sbjct: 23 IQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVI----DNDTFKQQHPNFDEL 78
Query: 298 IAGCVIGKAGSRLLEIRQISGAQINIHTGTESHKKMFHIQGCQEAVSLAQYLINMCIELQ 357
+ + + + I ++ + + Q M
Sbjct: 79 VKLYEK--DVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQ-TATMLQAKG 135
Query: 358 KNNTTNTSDNPEPADLDAAISAFMTASVNSSLIEKPTPHPGSMVTLGGLSELLANIAASN 417
P+ I + T + + + TP + + L L + +
Sbjct: 136 YETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTG 195
Query: 418 VKSTVQ 423
+ S ++
Sbjct: 196 LFSDIR 201
>d2sasa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein
{Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}
Length = 185
Score = 28.1 bits (61), Expect = 1.7
Identities = 5/36 (13%), Positives = 12/36 (33%)
Query: 1 MDGNGDGKIDEDTLITMRCLFHSSVNVNEISCLIGP 36
+ G D + + +S + + L+G
Sbjct: 148 ITDGGKVTFDLNRYKELYYRLLTSPAADAGNTLMGQ 183
>d1juoa_ a.39.1.8 (A:) Sorcin {Human (Homo sapiens) [TaxId: 9606]}
Length = 172
Score = 27.0 bits (59), Expect = 2.9
Identities = 5/46 (10%), Positives = 14/46 (30%)
Query: 1 MDGNGDGKIDEDTLITMRCLFHSSVNVNEISCLIGPGGCIVRRLRK 46
+D + G + + + + + G + L+K
Sbjct: 56 LDRDMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSGTVDPQELQK 101
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 27.5 bits (59), Expect = 3.0
Identities = 19/92 (20%), Positives = 22/92 (23%), Gaps = 8/92 (8%)
Query: 59 CPDRIVTVSGSVDNS------STSSVETGYPGHTLWVTSVDNVCTAYNFMCRSLEDYHIN 112
C +RIV SGS DN+ T GHT V S N
Sbjct: 26 CGNRIV--SGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWN 83
Query: 113 RNRMENCSPQPLQLKLVIPATHCGSLIGKGGC 144
E V + G
Sbjct: 84 AETGECIHTLYGHTSTVRCMHLHEKRVVSGSR 115
>d1sdda1 b.6.1.3 (A:1-180) Coagulation factor V {Cow (Bos taurus)
[TaxId: 9913]}
Length = 180
Score = 26.6 bits (58), Expect = 4.2
Identities = 11/77 (14%), Positives = 18/77 (23%), Gaps = 2/77 (2%)
Query: 68 GSVDNSSTSSVETGYPGHTLWVTSVDNVC-TAYNFMCRSLEDYHINRNRMENCSPQPLQL 126
S +G G TL+ D + N + H + S
Sbjct: 43 AYFQKEKPQSRTSGLLGPTLYAEVGDIMKVHFKNKAHKP-LSIHAQGIKYSKFSEGASYS 101
Query: 127 KLVIPATHCGSLIGKGG 143
+P + G
Sbjct: 102 DHTLPMEKMDDAVAPGQ 118
>d1s6ca_ a.39.1.5 (A:) Kchip1, Kv4 potassium channel-interacting
protein {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 178
Score = 26.7 bits (58), Expect = 4.3
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 1 MDGNGDGKIDEDTLITM 17
MD N DG + D +
Sbjct: 144 MDKNKDGIVTLDEFLES 160
>d1nqna_ b.61.1.1 (A:) Avidin {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 122
Score = 25.6 bits (56), Expect = 7.0
Identities = 8/44 (18%), Positives = 13/44 (29%)
Query: 218 ILSGGQAYTLHGEYAVPVQEVAGKKQPHPLAGLAVLGIEGIGST 261
I + G Y V + + + PL G + T
Sbjct: 19 IGAVNSRGEFTGTYTTAVTATSNEIKESPLHGTENTINKRTQPT 62
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.385
Gapped
Lambda K H
0.267 0.0683 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,528,579
Number of extensions: 69994
Number of successful extensions: 375
Number of sequences better than 10.0: 1
Number of HSP's gapped: 344
Number of HSP's successfully gapped: 90
Length of query: 433
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 345
Effective length of database: 1,199,356
Effective search space: 413777820
Effective search space used: 413777820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.7 bits)