Query psy11930
Match_columns 274
No_of_seqs 146 out of 621
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 22:36:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11930.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11930hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03803 Scramblase: Scramblas 100.0 5.4E-68 1.2E-72 467.2 25.7 221 39-262 1-221 (221)
2 KOG0621|consensus 100.0 4.9E-59 1.1E-63 421.2 16.2 247 25-273 41-292 (292)
3 COG4894 Uncharacterized conser 99.9 3.6E-22 7.8E-27 161.3 11.0 153 60-260 6-158 (159)
4 PF04525 Tub_2: Tubby C 2; In 99.7 2.3E-16 5.1E-21 135.7 15.7 164 54-253 7-186 (187)
5 PF03803 Scramblase: Scramblas 97.9 0.00041 8.8E-09 60.9 13.6 100 113-218 42-149 (221)
6 COG4894 Uncharacterized conser 97.2 0.00026 5.6E-09 58.0 3.0 77 144-234 18-94 (159)
7 PF04525 Tub_2: Tubby C 2; In 96.8 0.0041 9E-08 53.3 7.2 84 123-218 12-100 (187)
8 KOG0621|consensus 92.7 1.7 3.7E-05 40.2 11.1 56 115-171 189-244 (292)
9 cd02639 R3H_RRM R3H domain of 67.8 6.6 0.00014 27.5 3.0 30 228-257 14-43 (60)
10 cd06007 R3H_DEXH_helicase R3H 65.3 6 0.00013 27.6 2.3 29 226-254 11-39 (59)
11 cd02640 R3H_NRF R3H domain of 55.1 11 0.00024 26.3 2.3 29 226-254 11-40 (60)
12 cd02641 R3H_Smubp-2_like R3H d 41.0 22 0.00047 24.8 2.0 26 229-254 15-40 (60)
13 KOG0023|consensus 41.0 44 0.00094 31.6 4.4 90 155-255 72-170 (360)
14 TIGR03602 streptolysinS bacter 35.2 11 0.00025 25.3 -0.2 14 131-144 22-35 (56)
15 KOG1538|consensus 32.8 1.9E+02 0.0041 30.2 7.7 27 115-141 155-186 (1081)
16 KOG0318|consensus 32.0 2.8E+02 0.0061 28.0 8.5 72 108-185 155-229 (603)
17 PF13015 PRKCSH_1: Glucosidase 30.3 92 0.002 26.0 4.4 38 107-152 88-125 (154)
18 PF01556 CTDII: DnaJ C termina 29.8 51 0.0011 23.9 2.5 17 231-247 65-81 (81)
19 PF12396 DUF3659: Protein of u 28.8 1.1E+02 0.0023 21.8 3.9 14 149-162 15-28 (64)
20 PLN02552 isopentenyl-diphospha 24.8 1.6E+02 0.0034 26.5 5.2 52 81-134 23-79 (247)
21 PF04448 DUF551: Protein of un 23.8 37 0.00079 23.5 0.8 8 38-45 61-68 (69)
22 PF08662 eIF2A: Eukaryotic tra 21.4 5E+02 0.011 21.9 10.2 58 115-183 126-185 (194)
No 1
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].
Probab=100.00 E-value=5.4e-68 Score=467.17 Aligned_cols=221 Identities=53% Similarity=1.003 Sum_probs=214.0
Q ss_pred cccCCCCCCCCCCccccccCCCeEEEEEeeehhhhhhCcccCceEEEEcCCCCEEEEEEeecCeeeecccCCCCCeEEEE
Q psy11930 39 MNIPQGRPANCPPGLEYLTTVDQLMVKQKVELLEALIGWETNNKFTVKNAQGQKVFLAVEINDCCTRNCCGPLRPFEMKV 118 (274)
Q Consensus 39 m~~P~~~~~~~p~gLe~L~~l~~l~IkQ~~e~~E~~~g~e~~N~Y~I~d~~Gq~v~~~~E~s~~~~R~~~~~~R~f~l~v 118 (274)
||.|..++++||+|||+|+++++|+|+|+++++|+++|++++|+|.|+|++||+||+++|+++++.|+||+++|+|+|+|
T Consensus 1 ~~~~~~~~~~~p~gLe~L~~~~~l~I~Q~~e~~e~~~~~e~~N~Y~I~n~~g~~i~~~~E~s~~~~R~~~~~~R~f~~~i 80 (221)
T PF03803_consen 1 MPGPLATPPNCPPGLEYLAGLDQLLIKQQIEPLEIFTGFETPNRYDIKNPNGQQIYYAVEESDCCSRQCCGSHRPFKMHI 80 (221)
T ss_pred CCCCCCCCCCCChHHHHHhCCCEEEEEEEEEEeceecccccCceEEEECCCCCEEEEEEEeCcceeeeecCCCCCEEEEE
Confidence 78886555599999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCeEEEEEeecccccCCCCCcccEEEEEcCCCCEEEEEEeecccccceEEEEcCCCCEEEEEEcCceeeccCCCce
Q psy11930 119 LDNYKNEVIHFERPLACDSCWFPCCLQSLNVFSPPGALIGSIEQEWSLLTPIFVIKNGAGDIVLRIEGPICRYSMCGGDV 198 (274)
Q Consensus 119 ~D~~g~~vl~i~Rp~~c~~cc~~cc~~~~~V~~p~G~~iG~I~q~~~~~~~~f~I~d~~g~~~~~I~Gp~~~~~~cc~~~ 198 (274)
+|+.|++|++++||++|.. ||+||.++++|++|+|++||+|+|+|++|+++|+|+|++|+.+++|+||+|.|+ ||.++
T Consensus 81 ~D~~g~~vl~i~Rp~~c~~-C~~~~~~~~~V~~p~g~~iG~I~q~~~~~~~~f~I~d~~~~~~~~I~gp~~~~~-~~~~~ 158 (221)
T PF03803_consen 81 YDNYGREVLTIERPFKCCS-CCPCCLQEMEVESPPGNLIGSIRQPFSCCRPNFDIFDANGNPIFTIKGPCCCCS-CCCDW 158 (221)
T ss_pred EecCCCEEEEEEcCCccee-cccccceeEEEecCCCcEEEEEEEcCcccceEEEEEECCCceEEEEeCCcceec-cccce
Confidence 9999999999999999987 588999999999999999999999999999999999999999999999999988 99999
Q ss_pred EEEEEEcCCCeEEEEEEeeccccccccccCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHhhhc
Q psy11930 199 DFKILSRDGQTEVGRISKQWSGLLREAFTDADYFGISFPGDLDVRMKAVMLGACFLIDAMFYEK 262 (274)
Q Consensus 199 ~F~I~~~~g~~~VG~I~Kkw~G~~~e~ft~~D~y~I~Fp~dld~~~KallLaa~ilID~~~fe~ 262 (274)
+|+|+|++|+ .||+|+|+|+|+.+|+||++|+|.|+||+++|+++|||||||+|+|||+|||+
T Consensus 159 ~F~I~~~~~~-~vg~I~k~w~G~~~e~~t~~d~f~i~Fp~~l~~~~Kalll~a~~liD~~~Fe~ 221 (221)
T PF03803_consen 159 EFEIKDPNGQ-EVGSITKKWSGFCRELFTDADNFVIEFPPDLDVEQKALLLGAAFLIDYMYFER 221 (221)
T ss_pred eeeeecccCc-EEEEEEEecCCcchhhccccceEEEEcCCCCCHHHHHHHHHHHHHhhhhhhcC
Confidence 9999999995 99999999999999999999999999999999999999999999999999996
No 2
>KOG0621|consensus
Probab=100.00 E-value=4.9e-59 Score=421.18 Aligned_cols=247 Identities=38% Similarity=0.672 Sum_probs=230.7
Q ss_pred hcccccccccCCCccccCCCCCCC---CCCccccccCCCeEEEEEeeehhhhhhCcccCceEEEEcCCCCEEEEEEeecC
Q psy11930 25 RKAIKSTLWKNGGWMNIPQGRPAN---CPPGLEYLTTVDQLMVKQKVELLEALIGWETNNKFTVKNAQGQKVFLAVEIND 101 (274)
Q Consensus 25 ~~~~~~~~~~~~~wm~~P~~~~~~---~p~gLe~L~~l~~l~IkQ~~e~~E~~~g~e~~N~Y~I~d~~Gq~v~~~~E~s~ 101 (274)
..+..+++-+..+||+.|++.. + +|+||++|+.+|+++|.|++|++|+++|||++|||.|+|.+|+++|++.|+|+
T Consensus 41 ~p~~~~~p~~v~~~~~a~p~~~-~~~~~~~~l~~L~~~~~~~V~q~~E~~ei~tG~et~NRY~v~~~~g~~v~~~~E~S~ 119 (292)
T KOG0621|consen 41 LPQARDTPMVVPNQVAAMPVQM-TQLAPPNGLEYLAHLDSLMVVQQIEPLEIFTGFETANRYVVHDMYGQPLYYAMERSN 119 (292)
T ss_pred CCCCccCCCCCccccccCCCCC-CCcCCCChhheeecCCceEEEEeeeehhhhccCccCcEEEEEcCCcChhHHHHhhch
Confidence 3455556666677999998877 6 99999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccCCCCCeEEEEEeCCCCeEEEEEeecccccC-CCCCcccEEEEEcCCCCEEEEEEeecccccceEEEEcCCCCE
Q psy11930 102 CCTRNCCGPLRPFEMKVLDNYKNEVIHFERPLACDSC-WFPCCLQSLNVFSPPGALIGSIEQEWSLLTPIFVIKNGAGDI 180 (274)
Q Consensus 102 ~~~R~~~~~~R~f~l~v~D~~g~~vl~i~Rp~~c~~c-c~~cc~~~~~V~~p~G~~iG~I~q~~~~~~~~f~I~d~~g~~ 180 (274)
.+.|+++|.+|||.++|.|+.|++|++++||+.|.+| |++||.++++|+.|++.++|+|.|.|+++.++|+|.|..++.
T Consensus 120 ~~~Rq~~g~~RpF~~~i~D~~g~eVl~~~R~~~c~~~~c~~~~~~~~~v~~p~~~~lG~v~q~~~~~~~~f~i~~~~~~~ 199 (292)
T KOG0621|consen 120 VFARQYLGTHRPFAMRIMDNFGQEVLTCKRPFPCCSSACALCLAQEIEIQSPPMGLLGKVLQTWGCVNPNFHLWDRDGNL 199 (292)
T ss_pred HHHHHhhccCCcceeEeecccCcEEEEEeccccccccccccccccEEEEEcCCCceEEEEEEeeccccceEEEEccccee
Confidence 9999999999999999999999999999999999875 789999999999999999999999999999999999999999
Q ss_pred EEEEEcC-ceeeccCCCceEEEEEEcCCCeEEEEEEeeccccccccccCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Q psy11930 181 VLRIEGP-ICRYSMCGGDVDFKILSRDGQTEVGRISKQWSGLLREAFTDADYFGISFPGDLDVRMKAVMLGACFLIDAMF 259 (274)
Q Consensus 181 ~~~I~Gp-~~~~~~cc~~~~F~I~~~~g~~~VG~I~Kkw~G~~~e~ft~~D~y~I~Fp~dld~~~KallLaa~ilID~~~ 259 (274)
++.|+|| +|.|. ||.+..|.|+..+++..||+|+|+|+|+.+|+|||+|+|.|+||.|||+++||+|||++|+|||++
T Consensus 200 v~~v~gp~~~~~~-~~~d~~f~~~~~d~~~~vg~I~k~w~g~~rE~fTDad~f~v~FPldLdvk~kavllga~flID~~~ 278 (292)
T KOG0621|consen 200 VFLVEGPRCCTFA-CCDDTVFFPKTTDNGRIVGSISRKWAGLVREAFTDADTFVVHFPLDLDVKLKALLLGSTFLIDYMS 278 (292)
T ss_pred EEEEEcCceeEEE-eecCcceeEEEcCCCeEEEEEeecccchhhhheeccceeeEecCCcCCHHHHhhhhhheeeEEEEE
Confidence 9999999 77777 888899999888887789999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCCCCC
Q psy11930 260 YEKAGNRESDGIGM 273 (274)
Q Consensus 260 fe~~~~~~~~~~~~ 273 (274)
||++...++-.+|+
T Consensus 279 Fe~~~~~~~~~~~~ 292 (292)
T KOG0621|consen 279 FESRGIPSNMDIGG 292 (292)
T ss_pred EecCCCCCccccCC
Confidence 99998776666654
No 3
>COG4894 Uncharacterized conserved protein [Function unknown]
Probab=99.88 E-value=3.6e-22 Score=161.25 Aligned_cols=153 Identities=19% Similarity=0.345 Sum_probs=130.0
Q ss_pred CeEEEEEeeehhhhhhCcccCceEEEEcCCCCEEEEEEeecCeeeecccCCCCCeEEEEEeCCCCeEEEEEeecccccCC
Q psy11930 60 DQLMVKQKVELLEALIGWETNNKFTVKNAQGQKVFLAVEINDCCTRNCCGPLRPFEMKVLDNYKNEVIHFERPLACDSCW 139 (274)
Q Consensus 60 ~~l~IkQ~~e~~E~~~g~e~~N~Y~I~d~~Gq~v~~~~E~s~~~~R~~~~~~R~f~l~v~D~~g~~vl~i~Rp~~c~~cc 139 (274)
+++.|||+.. ...|.|.|+|++||.+|++.+. ++. . +-++.++|+.|++|+.++.|...-
T Consensus 6 ~tl~mkQk~~--------~~gd~f~I~d~dgE~af~VeGs--~f~---i----~dtlti~Da~G~~l~~i~~kll~l--- 65 (159)
T COG4894 6 ITLFMKQKMF--------SFGDAFHIYDRDGEEAFKVEGS--FFS---I----GDTLTITDASGKTLVSIEQKLLSL--- 65 (159)
T ss_pred HhHhhhhhhh--------hcccceEEECCCCcEEEEEeee--EEe---e----CceEEEEecCCCChHHHHHHHhhc---
Confidence 5677888886 4689999999999999999754 221 1 225788999999999999996643
Q ss_pred CCCcccEEEEEcCCCCEEEEEEeecccccceEEEEcCCCCEEEEEEcCceeeccCCCceEEEEEEcCCCeEEEEEEeecc
Q psy11930 140 FPCCLQSLNVFSPPGALIGSIEQEWSLLTPIFVIKNGAGDIVLRIEGPICRYSMCGGDVDFKILSRDGQTEVGRISKQWS 219 (274)
Q Consensus 140 ~~cc~~~~~V~~p~G~~iG~I~q~~~~~~~~f~I~d~~g~~~~~I~Gp~~~~~~cc~~~~F~I~~~~g~~~VG~I~Kkw~ 219 (274)
+|+++|++++|+ +..|++++++++++|+| |..+ +.|.|+.| +.+|++.+.+ ..+++|+|||
T Consensus 66 ----~~~yeI~d~~g~-~~~vrKK~tf~Rdk~e~-d~~~---~eihGNi~-------d~efkl~dg~--~~~aeVsKkw- 126 (159)
T COG4894 66 ----LPRYEISDGGGT-VCEVRKKVTFSRDKFEI-DGLN---WEIHGNIW-------DDEFKLTDGE--NVRAEVSKKW- 126 (159)
T ss_pred ----cceeEEEcCCCC-EEEEEEEEEEEeeeEEE-cCCC---eEEeccee-------ceEEEEecCC--ceehhheeee-
Confidence 899999999888 77888899999999999 4434 99999999 9999999743 3899999999
Q ss_pred ccccccccCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHhh
Q psy11930 220 GLLREAFTDADYFGISFPGDLDVRMKAVMLGACFLIDAMFY 260 (274)
Q Consensus 220 G~~~e~ft~~D~y~I~Fp~dld~~~KallLaa~ilID~~~f 260 (274)
|..+|+|.++|.++ +.++|+||.+++||++.+
T Consensus 127 ------f~~rdTY~l~vapd---e~a~lii~i~VaLD~v~~ 158 (159)
T COG4894 127 ------FSWRDTYHLQVAPD---EDALLIIAIAVALDMVLY 158 (159)
T ss_pred ------EeccceEEEEEcCc---hhhHHHHHHHHHHHHHhc
Confidence 99999999999775 667999999999999865
No 4
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=99.72 E-value=2.3e-16 Score=135.69 Aligned_cols=164 Identities=20% Similarity=0.298 Sum_probs=86.5
Q ss_pred ccccCCC-eEEEEEeeehhhhhhCcccCceEEEEcCCCCEEEEEEeecCeeeecccCCCCCeEEEEEeCCCCeEEEEEee
Q psy11930 54 EYLTTVD-QLMVKQKVELLEALIGWETNNKFTVKNAQGQKVFLAVEINDCCTRNCCGPLRPFEMKVLDNYKNEVIHFERP 132 (274)
Q Consensus 54 e~L~~l~-~l~IkQ~~e~~E~~~g~e~~N~Y~I~d~~Gq~v~~~~E~s~~~~R~~~~~~R~f~l~v~D~~g~~vl~i~Rp 132 (274)
++.+.-. .+.|+++...+ ..+.|.|+|++|+.+|.+.. ... +.. +-++.++|++|++|++|+|+
T Consensus 7 ~~~~~~~~~l~v~~k~~~~-------~~~~f~V~D~~G~~vf~V~g-~~~-----~s~--~~~~~l~D~~G~~L~~i~~k 71 (187)
T PF04525_consen 7 QYCSPQPVTLTVKKKSLSF-------SGDDFTVYDENGNVVFRVDG-GKF-----FSI--GKKRTLMDASGNPLFTIRRK 71 (187)
T ss_dssp GGB-SS-EEEEEE-----------------EEEEETTS-EEEEEE---SC-----TTB--TTEEEEE-TTS-EEEEEE--
T ss_pred HHcCCCceEEEEEEEEeee-------cCCCEEEEcCCCCEEEEEEE-ecc-----cCC--CCEEEEECCCCCEEEEEEee
Confidence 4444443 44586666432 47999999999999999988 111 111 22789999999999999996
Q ss_pred -cccccCCCCCcccEEEEEcCCCC----EEEEEEeeccc-ccceEEEEcC---------CCCEEEEEEcCceeeccCCCc
Q psy11930 133 -LACDSCWFPCCLQSLNVFSPPGA----LIGSIEQEWSL-LTPIFVIKNG---------AGDIVLRIEGPICRYSMCGGD 197 (274)
Q Consensus 133 -~~c~~cc~~cc~~~~~V~~p~G~----~iG~I~q~~~~-~~~~f~I~d~---------~g~~~~~I~Gp~~~~~~cc~~ 197 (274)
+.. +++.+|+.+++. ++++|++.+.+ .++.+.++.. .+.+-+.|+|+++ +
T Consensus 72 ~~~l--------~~~w~i~~~~~~~~~~~i~tvkk~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~G~~~-------~ 136 (187)
T PF04525_consen 72 LFSL--------RPTWEIYRGGGSEGKKPIFTVKKKSMLQNKDSFDVFLPPKSNISIDDSEGPDFEIKGNFW-------D 136 (187)
T ss_dssp --------------EEEEEETT---GGGEEEEEE----------EEEEET--T----------SEEEES-TT-------T
T ss_pred eccc--------ceEEEEEECCCCccCceEEEEEEecccCCCcceeEEEecccceeecCCCCceEEEEEEec-------C
Confidence 443 799999998776 59999998222 2333444432 3445699999988 8
Q ss_pred eEEEEEEcCCCeEEEEEEeeccccccccccCCceEEEEeCCCCCHHHHHHHHHHHH
Q psy11930 198 VDFKILSRDGQTEVGRISKQWSGLLREAFTDADYFGISFPGDLDVRMKAVMLGACF 253 (274)
Q Consensus 198 ~~F~I~~~~g~~~VG~I~Kkw~G~~~e~ft~~D~y~I~Fp~dld~~~KallLaa~i 253 (274)
++|.|++.+|+ .||+|++++. .++++...|+|.|++.|+.|. |+++|.++
T Consensus 137 ~~~~I~~~~g~-~VA~i~rk~~--~k~~~~~~dty~l~V~pg~D~---~lv~alvv 186 (187)
T PF04525_consen 137 RSFTIYDSGGR-VVAEISRKYS--SKKWFSGRDTYTLTVAPGVDQ---ALVVALVV 186 (187)
T ss_dssp T--EEEECC---EEEEEEE------------B-SEEEEE-TTSBH---HHHHHHHH
T ss_pred cEEEEEEcCCC-EEEEEecccc--eeeEEecCcEEEEEEcCCCCH---HHheeEEe
Confidence 99999986664 9999998887 677899999999999998776 77777765
No 5
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].
Probab=97.87 E-value=0.00041 Score=60.92 Aligned_cols=100 Identities=13% Similarity=0.249 Sum_probs=79.3
Q ss_pred CeEEEEEeCCCCeEEEEEeecccc-cCCC-CCcccEEEEEcCCCCEEEEEEeeccccc------ceEEEEcCCCCEEEEE
Q psy11930 113 PFEMKVLDNYKNEVIHFERPLACD-SCWF-PCCLQSLNVFSPPGALIGSIEQEWSLLT------PIFVIKNGAGDIVLRI 184 (274)
Q Consensus 113 ~f~l~v~D~~g~~vl~i~Rp~~c~-~cc~-~cc~~~~~V~~p~G~~iG~I~q~~~~~~------~~f~I~d~~g~~~~~I 184 (274)
+-+..|.|.+|++|+.....-.|. ..|| +...-+|.|.++.|+.+-++++++.++. .+.+|.++.|+.+.+|
T Consensus 42 ~N~Y~I~n~~g~~i~~~~E~s~~~~R~~~~~~R~f~~~i~D~~g~~vl~i~Rp~~c~~C~~~~~~~~~V~~p~g~~iG~I 121 (221)
T PF03803_consen 42 PNRYDIKNPNGQQIYYAVEESDCCSRQCCGSHRPFKMHIYDNYGREVLTIERPFKCCSCCPCCLQEMEVESPPGNLIGSI 121 (221)
T ss_pred CceEEEECCCCCEEEEEEEeCcceeeeecCCCCCEEEEEEecCCCEEEEEEcCCcceecccccceeEEEecCCCcEEEEE
Confidence 346788999999999887765443 2344 3345678999999999999999888754 6788999999999999
Q ss_pred EcCceeeccCCCceEEEEEEcCCCeEEEEEEeec
Q psy11930 185 EGPICRYSMCGGDVDFKILSRDGQTEVGRISKQW 218 (274)
Q Consensus 185 ~Gp~~~~~~cc~~~~F~I~~~~g~~~VG~I~Kkw 218 (274)
+-++. || ...|.|.|.+|+ .+..|.-.+
T Consensus 122 ~q~~~----~~-~~~f~I~d~~~~-~~~~I~gp~ 149 (221)
T PF03803_consen 122 RQPFS----CC-RPNFDIFDANGN-PIFTIKGPC 149 (221)
T ss_pred EEcCc----cc-ceEEEEEECCCc-eEEEEeCCc
Confidence 98775 33 688999999996 899997654
No 6
>COG4894 Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.00026 Score=58.05 Aligned_cols=77 Identities=18% Similarity=0.326 Sum_probs=48.3
Q ss_pred ccEEEEEcCCCCEEEEEEeecccccceEEEEcCCCCEEEEEEcCceeeccCCCceEEEEEEcCCCeEEEEEEeecccccc
Q psy11930 144 LQSLNVFSPPGALIGSIEQEWSLLTPIFVIKNGAGDIVLRIEGPICRYSMCGGDVDFKILSRDGQTEVGRISKQWSGLLR 223 (274)
Q Consensus 144 ~~~~~V~~p~G~~iG~I~q~~~~~~~~f~I~d~~g~~~~~I~Gp~~~~~~cc~~~~F~I~~~~g~~~VG~I~Kkw~G~~~ 223 (274)
-..+.|++++|+..=+|.-++--.+-+|.|.|+.|.+++.|+-+...- --.|+|.+.+|. +..|+||..
T Consensus 18 gd~f~I~d~dgE~af~VeGs~f~i~dtlti~Da~G~~l~~i~~kll~l-----~~~yeI~d~~g~--~~~vrKK~t---- 86 (159)
T COG4894 18 GDAFHIYDRDGEEAFKVEGSFFSIGDTLTITDASGKTLVSIEQKLLSL-----LPRYEISDGGGT--VCEVRKKVT---- 86 (159)
T ss_pred ccceEEECCCCcEEEEEeeeEEeeCceEEEEecCCCChHHHHHHHhhc-----cceeEEEcCCCC--EEEEEEEEE----
Confidence 355666776776666666544444555777777777777776665522 356778777663 777777762
Q ss_pred ccccCCceEEE
Q psy11930 224 EAFTDADYFGI 234 (274)
Q Consensus 224 e~ft~~D~y~I 234 (274)
|+ .|.|.+
T Consensus 87 --f~-Rdk~e~ 94 (159)
T COG4894 87 --FS-RDKFEI 94 (159)
T ss_pred --EE-eeeEEE
Confidence 44 666665
No 7
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=96.82 E-value=0.0041 Score=53.31 Aligned_cols=84 Identities=10% Similarity=0.209 Sum_probs=50.0
Q ss_pred CCeEEEEEee-cccccCCCCCcccEEEEEcCCCCEEEEEEe-ecccccceEEEEcCCCCEEEEEEcCceeeccCCCceEE
Q psy11930 123 KNEVIHFERP-LACDSCWFPCCLQSLNVFSPPGALIGSIEQ-EWSLLTPIFVIKNGAGDIVLRIEGPICRYSMCGGDVDF 200 (274)
Q Consensus 123 g~~vl~i~Rp-~~c~~cc~~cc~~~~~V~~p~G~~iG~I~q-~~~~~~~~f~I~d~~g~~~~~I~Gp~~~~~~cc~~~~F 200 (274)
..+.|++.+. .... ...+.|++.+|+++-+|.. ++..++.+..|+|++|+++++|+-.... -...|
T Consensus 12 ~~~~l~v~~k~~~~~-------~~~f~V~D~~G~~vf~V~g~~~~s~~~~~~l~D~~G~~L~~i~~k~~~-----l~~~w 79 (187)
T PF04525_consen 12 QPVTLTVKKKSLSFS-------GDDFTVYDENGNVVFRVDGGKFFSIGKKRTLMDASGNPLFTIRRKLFS-----LRPTW 79 (187)
T ss_dssp S-EEEEEE-----------------EEEEETTS-EEEEEE--SCTTBTTEEEEE-TTS-EEEEEE-------------EE
T ss_pred CceEEEEEEEEeeec-------CCCEEEEcCCCCEEEEEEEecccCCCCEEEEECCCCCEEEEEEeeecc-----cceEE
Confidence 4466788554 3322 5788999999999999999 7888999999999999999999985441 14689
Q ss_pred EEEEcCCC---eEEEEEEeec
Q psy11930 201 KILSRDGQ---TEVGRISKQW 218 (274)
Q Consensus 201 ~I~~~~g~---~~VG~I~Kkw 218 (274)
+|+..++. ..+++|+|++
T Consensus 80 ~i~~~~~~~~~~~i~tvkk~~ 100 (187)
T PF04525_consen 80 EIYRGGGSEGKKPIFTVKKKS 100 (187)
T ss_dssp EEEETT---GGGEEEEEE---
T ss_pred EEEECCCCccCceEEEEEEec
Confidence 99988774 1499999994
No 8
>KOG0621|consensus
Probab=92.67 E-value=1.7 Score=40.16 Aligned_cols=56 Identities=21% Similarity=0.293 Sum_probs=37.9
Q ss_pred EEEEEeCCCCeEEEEEeecccccCCCCCcccEEEEEcCCCCEEEEEEeecccccceE
Q psy11930 115 EMKVLDNYKNEVIHFERPLACDSCWFPCCLQSLNVFSPPGALIGSIEQEWSLLTPIF 171 (274)
Q Consensus 115 ~l~v~D~~g~~vl~i~Rp~~c~~cc~~cc~~~~~V~~p~G~~iG~I~q~~~~~~~~f 171 (274)
+.+|.|..++.++.++.|--|.+|||.- .....+...+|..+|+|.++|..+....
T Consensus 189 ~f~i~~~~~~~v~~v~gp~~~~~~~~~d-~~f~~~~~d~~~~vg~I~k~w~g~~rE~ 244 (292)
T KOG0621|consen 189 NFHLWDRDGNLVFLVEGPRCCTFACCDD-TVFFPKTTDNGRIVGSISRKWAGLVREA 244 (292)
T ss_pred eEEEEcccceeEEEEEcCceeEEEeecC-cceeEEEcCCCeEEEEEeecccchhhhh
Confidence 5677787788888888885555445431 1223445557888999999998776543
No 9
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=67.76 E-value=6.6 Score=27.54 Aligned_cols=30 Identities=13% Similarity=0.113 Sum_probs=23.8
Q ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHHH
Q psy11930 228 DADYFGISFPGDLDVRMKAVMLGACFLIDA 257 (274)
Q Consensus 228 ~~D~y~I~Fp~dld~~~KallLaa~ilID~ 257 (274)
+.+.+.+.||+++++.+|++|=-.|=-+-.
T Consensus 14 d~~~~eL~Fp~~ls~~eRriih~la~~lGL 43 (60)
T cd02639 14 DRMRDELAFPSSLSPAERRIVHLLASRLGL 43 (60)
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHHcCC
Confidence 567899999999999999988665544433
No 10
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=65.32 E-value=6 Score=27.64 Aligned_cols=29 Identities=28% Similarity=0.400 Sum_probs=23.1
Q ss_pred ccCCceEEEEeCCCCCHHHHHHHHHHHHH
Q psy11930 226 FTDADYFGISFPGDLDVRMKAVMLGACFL 254 (274)
Q Consensus 226 ft~~D~y~I~Fp~dld~~~KallLaa~il 254 (274)
|-..+.+.++||+.++..+|++|=-.|--
T Consensus 11 F~~~~~~~l~Fpp~ls~~eR~~vH~~a~~ 39 (59)
T cd06007 11 FRASDNEEYEFPSSLTNHERAVIHRLCRK 39 (59)
T ss_pred HHcCcccEEEcCCCCCHHHHHHHHHHHHH
Confidence 45556899999999999999988655544
No 11
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=55.09 E-value=11 Score=26.33 Aligned_cols=29 Identities=10% Similarity=0.218 Sum_probs=22.5
Q ss_pred ccCCc-eEEEEeCCCCCHHHHHHHHHHHHH
Q psy11930 226 FTDAD-YFGISFPGDLDVRMKAVMLGACFL 254 (274)
Q Consensus 226 ft~~D-~y~I~Fp~dld~~~KallLaa~il 254 (274)
|-..+ .+.+.||+.++..+|++|=-.|--
T Consensus 11 F~~s~~~~~l~f~p~lt~~eR~~vH~~a~~ 40 (60)
T cd02640 11 YAHSDDIRDMVFSPEFSKEERALIHQIAQK 40 (60)
T ss_pred HHcCCccceEEcCCCCCHHHHHHHHHHHHH
Confidence 44444 899999999999999988655544
No 12
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=41.02 E-value=22 Score=24.76 Aligned_cols=26 Identities=12% Similarity=0.098 Sum_probs=20.8
Q ss_pred CceEEEEeCCCCCHHHHHHHHHHHHH
Q psy11930 229 ADYFGISFPGDLDVRMKAVMLGACFL 254 (274)
Q Consensus 229 ~D~y~I~Fp~dld~~~KallLaa~il 254 (274)
.+...++||+.|+..+|++|=..|=-
T Consensus 15 ~~~~~l~F~p~ls~~eR~~vH~lA~~ 40 (60)
T cd02641 15 PKATELEFPPTLSSHDRLLVHELAEE 40 (60)
T ss_pred CCcCcEECCCCCCHHHHHHHHHHHHH
Confidence 34489999999999999988665544
No 13
>KOG0023|consensus
Probab=41.00 E-value=44 Score=31.61 Aligned_cols=90 Identities=22% Similarity=0.345 Sum_probs=59.5
Q ss_pred CEEEEEEeecccccceEEEEcCCCCEEEEEEcCceeeccC-------CCceEEEE--EEcCCCeEEEEEEeecccccccc
Q psy11930 155 ALIGSIEQEWSLLTPIFVIKNGAGDIVLRIEGPICRYSMC-------GGDVDFKI--LSRDGQTEVGRISKQWSGLLREA 225 (274)
Q Consensus 155 ~~iG~I~q~~~~~~~~f~I~d~~g~~~~~I~Gp~~~~~~c-------c~~~~F~I--~~~~g~~~VG~I~Kkw~G~~~e~ 225 (274)
+.+|.|.+ ...--.+|.|=|.-| +-.+.|+|..|-.| |....++. .+.|| +|++ .||. ++
T Consensus 72 EiaG~Vvk-vGs~V~~~kiGD~vG--Vg~~~~sC~~CE~C~~~~E~yCpk~~~t~~g~~~DG-----t~~~--ggf~-~~ 140 (360)
T KOG0023|consen 72 EIAGVVVK-VGSNVTGFKIGDRVG--VGWLNGSCLSCEYCKSGNENYCPKMHFTYNGVYHDG-----TITQ--GGFQ-EY 140 (360)
T ss_pred eeeEEEEE-ECCCcccccccCeee--eeEEeccccCccccccCCcccCCceeEeccccccCC-----CCcc--Cccc-ee
Confidence 45677765 333467788866666 45677887766544 33222222 22333 3433 4553 67
Q ss_pred ccCCceEEEEeCCCCCHHHHHHHHHHHHHH
Q psy11930 226 FTDADYFGISFPGDLDVRMKAVMLGACFLI 255 (274)
Q Consensus 226 ft~~D~y~I~Fp~dld~~~KallLaa~ilI 255 (274)
.+-.+.|.+.+|++++.+.-|=||.|.+..
T Consensus 141 ~~v~~~~a~kIP~~~pl~~aAPlLCaGITv 170 (360)
T KOG0023|consen 141 AVVDEVFAIKIPENLPLASAAPLLCAGITV 170 (360)
T ss_pred EEEeeeeEEECCCCCChhhccchhhcceEE
Confidence 888999999999999999999999988764
No 14
>TIGR03602 streptolysinS bacteriocin protoxin, streptolysin S family. Members of this family are bacteriocin precursors. These small, ribosomally produced polypeptide precursors are extensively processed post-translationally. This family belongs to a class of heterocycle-containing bacteriocins, including streptolysin S from Streptococcus pyogenes, and related bacteriocins from Streptococcus iniae and Clostridium botulinum. Streptolysin S is hemolytic. Bacteriocin genes in general are small and highly diverse, with odd sequence composition, and are easily missed by many gene-finding programs.
Probab=35.24 E-value=11 Score=25.26 Aligned_cols=14 Identities=36% Similarity=1.025 Sum_probs=8.1
Q ss_pred eecccccCCCCCcc
Q psy11930 131 RPLACDSCWFPCCL 144 (274)
Q Consensus 131 Rp~~c~~cc~~cc~ 144 (274)
-|-.|.+|||.||.
T Consensus 22 apggcccccc~cc~ 35 (56)
T TIGR03602 22 APGGCCCCCCCCCF 35 (56)
T ss_pred cCCCeEEEeccEEE
Confidence 36666655555554
No 15
>KOG1538|consensus
Probab=32.83 E-value=1.9e+02 Score=30.17 Aligned_cols=27 Identities=26% Similarity=0.634 Sum_probs=20.4
Q ss_pred EEEEEeCCCCeEEEEEeecc-----cccCCCC
Q psy11930 115 EMKVLDNYKNEVIHFERPLA-----CDSCWFP 141 (274)
Q Consensus 115 ~l~v~D~~g~~vl~i~Rp~~-----c~~cc~~ 141 (274)
++.+.++.|+|-.+|+||-. ++.||||
T Consensus 155 TIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p 186 (1081)
T KOG1538|consen 155 TISIRNKNGEEKVKIERPGGSNSPIWSICWNP 186 (1081)
T ss_pred eEEeecCCCCcceEEeCCCCCCCCceEEEecC
Confidence 67788999999999999743 3336665
No 16
>KOG0318|consensus
Probab=31.96 E-value=2.8e+02 Score=27.96 Aligned_cols=72 Identities=25% Similarity=0.377 Sum_probs=38.0
Q ss_pred cCCCCCeEEEEEeCCCCeEEEEEee-cccccC-CCCCcccEEEEEcCCCCEEEEEEeecccccceEEEEcC-CCCEEEEE
Q psy11930 108 CGPLRPFEMKVLDNYKNEVIHFERP-LACDSC-WFPCCLQSLNVFSPPGALIGSIEQEWSLLTPIFVIKNG-AGDIVLRI 184 (274)
Q Consensus 108 ~~~~R~f~l~v~D~~g~~vl~i~Rp-~~c~~c-c~~cc~~~~~V~~p~G~~iG~I~q~~~~~~~~f~I~d~-~g~~~~~I 184 (274)
+++.|||.+ ++-.+...|..++-| |++..- .--.-.-.-.=++|+|+..+++-.+ .+..|+|. .|+.+..+
T Consensus 155 ~KpsRPfRi-~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsD-----gki~iyDGktge~vg~l 228 (603)
T KOG0318|consen 155 FKPSRPFRI-ATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSD-----GKIYIYDGKTGEKVGEL 228 (603)
T ss_pred ccCCCceEE-EeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCC-----ccEEEEcCCCccEEEEe
Confidence 478899977 344445566666664 665421 0000000001146888888777543 55666664 35555555
Q ss_pred E
Q psy11930 185 E 185 (274)
Q Consensus 185 ~ 185 (274)
.
T Consensus 229 ~ 229 (603)
T KOG0318|consen 229 E 229 (603)
T ss_pred c
Confidence 5
No 17
>PF13015 PRKCSH_1: Glucosidase II beta subunit-like protein
Probab=30.26 E-value=92 Score=25.98 Aligned_cols=38 Identities=18% Similarity=0.352 Sum_probs=30.8
Q ss_pred ccCCCCCeEEEEEeCCCCeEEEEEeecccccCCCCCcccEEEEEcC
Q psy11930 107 CCGPLRPFEMKVLDNYKNEVIHFERPLACDSCWFPCCLQSLNVFSP 152 (274)
Q Consensus 107 ~~~~~R~f~l~v~D~~g~~vl~i~Rp~~c~~cc~~cc~~~~~V~~p 152 (274)
+.|+.|+.++++.=....+|+.+..|-+| ...|++.+|
T Consensus 88 wnGp~Rst~V~l~Cg~~~~l~sV~Ep~~C--------~Y~~~~~TP 125 (154)
T PF13015_consen 88 WNGPQRSTTVHLECGEENKLVSVSEPSKC--------EYVMEFETP 125 (154)
T ss_pred CCCCCcCEEEEEECCCcceEEEecCCCce--------EEEEEEeeC
Confidence 34889999998887777889999999997 677777765
No 18
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=29.76 E-value=51 Score=23.89 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=12.7
Q ss_pred eEEEEeCCCCCHHHHHH
Q psy11930 231 YFGISFPGDLDVRMKAV 247 (274)
Q Consensus 231 ~y~I~Fp~dld~~~Kal 247 (274)
+|.|.||..++.++|.|
T Consensus 65 ~~~V~~P~~ls~~qk~l 81 (81)
T PF01556_consen 65 KFEVEFPKKLSPEQKEL 81 (81)
T ss_dssp EEEEE--SSTSHHHHHH
T ss_pred EEEEECCCCCCHHHhcC
Confidence 57788999999999975
No 19
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=28.78 E-value=1.1e+02 Score=21.77 Aligned_cols=14 Identities=21% Similarity=0.551 Sum_probs=7.2
Q ss_pred EEcCCCCEEEEEEe
Q psy11930 149 VFSPPGALIGSIEQ 162 (274)
Q Consensus 149 V~~p~G~~iG~I~q 162 (274)
|.+.+|++||+|.+
T Consensus 15 V~d~~G~~vG~vve 28 (64)
T PF12396_consen 15 VVDDDGNVVGRVVE 28 (64)
T ss_pred EECCCCCEEEEEec
Confidence 34445555555554
No 20
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=24.78 E-value=1.6e+02 Score=26.54 Aligned_cols=52 Identities=8% Similarity=0.054 Sum_probs=34.9
Q ss_pred ceEEEEcCCCCEEEEEEeecCeeee---c--ccCCCCCeEEEEEeCCCCeEEEEEeecc
Q psy11930 81 NKFTVKNAQGQKVFLAVEINDCCTR---N--CCGPLRPFEMKVLDNYKNEVIHFERPLA 134 (274)
Q Consensus 81 N~Y~I~d~~Gq~v~~~~E~s~~~~R---~--~~~~~R~f~l~v~D~~g~~vl~i~Rp~~ 134 (274)
..-.|+|+++++++.+... . +.+ . ----||+|.+-|+|..|+-+++-+.+.+
T Consensus 23 e~v~lvDe~d~~~G~~~r~-~-~H~~~~~~~~gl~Hra~~v~i~n~~g~lLLQkRs~~K 79 (247)
T PLN02552 23 DECILVDENDNVVGHDSKY-N-CHLFEKIEPRGLLHRAFSVFLFNSKYELLLQQRAATK 79 (247)
T ss_pred CeEEEEcCCCCEEeeeEHh-h-hhccccccCCCceEEEEEEEEEcCCCeEEEEEecCCC
Confidence 5667889999999988532 1 111 0 0024789999999999976666555544
No 21
>PF04448 DUF551: Protein of unknown function (DUF551) ; InterPro: IPR007539 This entry represents the C terminus of a protein of unknown function, found in dsDNA viruses with no RNA stage, including bacteriophages lambda and P22, and also in some Escherichia coli prophages.
Probab=23.76 E-value=37 Score=23.46 Aligned_cols=8 Identities=38% Similarity=1.132 Sum_probs=6.9
Q ss_pred ccccCCCC
Q psy11930 38 WMNIPQGR 45 (274)
Q Consensus 38 wm~~P~~~ 45 (274)
|||.|.++
T Consensus 61 WmPLPepP 68 (69)
T PF04448_consen 61 WMPLPEPP 68 (69)
T ss_pred CCcCCCCc
Confidence 99999865
No 22
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=21.39 E-value=5e+02 Score=21.88 Aligned_cols=58 Identities=21% Similarity=0.341 Sum_probs=31.3
Q ss_pred EEEEEeCCCCeEE-EEEeecccccCCCCCcccEEEEEcCCCCEEEEEEeeccc-ccceEEEEcCCCCEEEE
Q psy11930 115 EMKVLDNYKNEVI-HFERPLACDSCWFPCCLQSLNVFSPPGALIGSIEQEWSL-LTPIFVIKNGAGDIVLR 183 (274)
Q Consensus 115 ~l~v~D~~g~~vl-~i~Rp~~c~~cc~~cc~~~~~V~~p~G~~iG~I~q~~~~-~~~~f~I~d~~g~~~~~ 183 (274)
.|.+.|....+.+ +.+.+ .+ ..+ -++|+|+++.+....+.. ....|.|.+-+|+.+++
T Consensus 126 ~l~~wd~~~~~~i~~~~~~-~~---------t~~-~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~ 185 (194)
T PF08662_consen 126 DLEFWDVRKKKKISTFEHS-DA---------TDV-EWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYK 185 (194)
T ss_pred EEEEEECCCCEEeeccccC-cE---------EEE-EEcCCCCEEEEEEeccceeccccEEEEEecCeEeEe
Confidence 5778887765544 33332 21 111 367999999988753211 22344555444444433
Done!