Query psy11930
Match_columns 274
No_of_seqs 146 out of 621
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 22:37:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11930.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11930hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zxu_A AT5G01750 protein; PFAM 100.0 2.1E-27 7.2E-32 207.6 19.3 177 52-264 29-216 (217)
2 1zxu_A AT5G01750 protein; PFAM 97.4 0.002 6.7E-08 55.3 12.7 99 88-206 34-137 (217)
3 2lqc_B Voltage-dependent L-typ 35.0 12 0.0004 20.6 0.0 11 21-31 5-15 (26)
4 1msz_A DNA-binding protein smu 26.3 17 0.00059 26.3 0.5 29 226-254 28-56 (86)
5 3i38_A Putative chaperone DNAJ 20.8 72 0.0025 23.6 3.1 22 231-252 73-94 (109)
6 2q2g_A HSP40 protein, heat sho 20.0 68 0.0023 25.9 3.0 20 231-250 158-177 (180)
7 3agx_A DNAJ homolog subfamily 19.6 70 0.0024 25.9 3.0 20 231-250 158-177 (181)
8 2v2f_A Penicillin binding prot 17.9 72 0.0025 17.1 1.9 13 172-184 8-20 (26)
9 3b42_A GSU0935, methyl-accepti 17.3 1.5E+02 0.005 22.4 4.3 75 81-165 48-125 (135)
10 2jxf_A NS4B(40-69), genome pol 16.7 13 0.00044 21.3 -1.5 11 50-60 19-29 (30)
No 1
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=99.95 E-value=2.1e-27 Score=207.56 Aligned_cols=177 Identities=15% Similarity=0.246 Sum_probs=129.5
Q ss_pred ccccccC-CCeEEEEEeeehhhhhhCcccCceEEEEcCCCCEEEEEEeecCeeeecccCCCCCeEEEEEeCCCCeEEEEE
Q psy11930 52 GLEYLTT-VDQLMVKQKVELLEALIGWETNNKFTVKNAQGQKVFLAVEINDCCTRNCCGPLRPFEMKVLDNYKNEVIHFE 130 (274)
Q Consensus 52 gLe~L~~-l~~l~IkQ~~e~~E~~~g~e~~N~Y~I~d~~Gq~v~~~~E~s~~~~R~~~~~~R~f~l~v~D~~g~~vl~i~ 130 (274)
|-++++. -.+++|+||...+ ..|+|.|+|++|+.+|.|.++. + .++.+++|+|++|++|++|+
T Consensus 29 ~~~~~~~~~~~l~vkqk~~~~-------~~~~f~V~D~~G~~vf~V~~~~--~-------~~~~~~~l~D~~G~~l~~i~ 92 (217)
T 1zxu_A 29 DPKYCAPYPIDMAIVRKMMSL-------TDGNFVITDVNGNLLFKVKEPV--F-------GLHDKRVLLDGSGTPVVTLR 92 (217)
T ss_dssp CGGGBCSSCEEEEEECC------------CCCEEEEETTSCEEEEEECSS--T-------TCCSEEEEECTTSCEEEEEE
T ss_pred CccccCCCCcEEEEEEEEeEe-------eCCCEEEEeCCCCEEEEEEccc--c-------CCCCEEEEECCCCCEEEEEE
Confidence 3467764 5778999998754 3579999999999999998852 1 34679999999999999999
Q ss_pred eecccccCCCCCcccEEEEEcCCCC----EEEEEEee--cccccceEEEEcCC----CCEEEEEEcCceeeccCCCceEE
Q psy11930 131 RPLACDSCWFPCCLQSLNVFSPPGA----LIGSIEQE--WSLLTPIFVIKNGA----GDIVLRIEGPICRYSMCGGDVDF 200 (274)
Q Consensus 131 Rp~~c~~cc~~cc~~~~~V~~p~G~----~iG~I~q~--~~~~~~~f~I~d~~----g~~~~~I~Gp~~~~~~cc~~~~F 200 (274)
|+..+ +.++++|+.+++. ++|+|+++ ++ ++++|+|.+++ +...++|+|+++ +++|
T Consensus 93 rk~~~-------~~~~~~v~~~~~~~~~~~i~~vrk~~~~~-~~~~~~V~~~~~~~~~~~~~~I~G~~~-------~~~f 157 (217)
T 1zxu_A 93 EKMVS-------MHDRWQVFRGGSTDQRDLLYTVKRSSMLQ-LKTKLDVFLGHNKDEKRCDFRVKGSWL-------ERSC 157 (217)
T ss_dssp C-------------CEEEEEETTCCCGGGEEEEEEC--------CCEEEEETTCCC-CCCSEEEESCTT-------TTCC
T ss_pred ccccc-------cCcEEEEEcCCCCCCCcEEEEEEEecccc-CCCeEEEEECCCCCCCceEEEEEEeEe-------CCEE
Confidence 98543 2678889887654 79999998 78 89999999875 346799999987 8999
Q ss_pred EEEEcCCCeEEEEEEeeccccccccccCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHhhhccC
Q psy11930 201 KILSRDGQTEVGRISKQWSGLLREAFTDADYFGISFPGDLDVRMKAVMLGACFLIDAMFYEKAG 264 (274)
Q Consensus 201 ~I~~~~g~~~VG~I~Kkw~G~~~e~ft~~D~y~I~Fp~dld~~~KallLaa~ilID~~~fe~~~ 264 (274)
.|++.+++..||+|+|+|+ ++++|+++|+|.|+|++++|. +++||++++||+++++++.
T Consensus 158 ~I~~~~~~~~Va~I~kk~~--~~~~~~~~D~y~l~V~p~~D~---aliialvv~iD~~~~~~~~ 216 (217)
T 1zxu_A 158 VVYAGESDAIVAQMHRKHT--VQSVFLGKDNFSVTVYPNVDY---AFIASLVVILDDVNREDRA 216 (217)
T ss_dssp EEEETTTCCEEEEEEEC----------CBCSEEEEECTTSBH---HHHHHHHHHHHHHHC----
T ss_pred EEEECCCCEEEEEEEeeee--ccccccCCcEEEEEECCCCCH---HHHHHHHHHHHHhhhhccC
Confidence 9999874359999999996 688999999999999999885 9999999999999998753
No 2
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=97.43 E-value=0.002 Score=55.35 Aligned_cols=99 Identities=8% Similarity=0.098 Sum_probs=65.2
Q ss_pred CCCCEEEEEEeecCeeeecccCCCCCeEEEEEeCCCCeEEEEEeecccccCCCCCcccEEEEEcCCCCEEEEEEeecccc
Q psy11930 88 AQGQKVFLAVEINDCCTRNCCGPLRPFEMKVLDNYKNEVIHFERPLACDSCWFPCCLQSLNVFSPPGALIGSIEQEWSLL 167 (274)
Q Consensus 88 ~~Gq~v~~~~E~s~~~~R~~~~~~R~f~l~v~D~~g~~vl~i~Rp~~c~~cc~~cc~~~~~V~~p~G~~iG~I~q~~~~~ 167 (274)
..++..+++.++...+. .. ...|+|.+|+.+++++... +. ...++.|.+..|+.+.+|+++.-.+
T Consensus 34 ~~~~~~l~vkqk~~~~~------~~--~f~V~D~~G~~vf~V~~~~-~~------~~~~~~l~D~~G~~l~~i~rk~~~~ 98 (217)
T 1zxu_A 34 APYPIDMAIVRKMMSLT------DG--NFVITDVNGNLLFKVKEPV-FG------LHDKRVLLDGSGTPVVTLREKMVSM 98 (217)
T ss_dssp CSSCEEEEEECC-----------CC--CEEEEETTSCEEEEEECSS-TT------CCSEEEEECTTSCEEEEEEC-----
T ss_pred CCCCcEEEEEEEEeEee------CC--CEEEEeCCCCEEEEEEccc-cC------CCCEEEEECCCCCEEEEEEcccccc
Confidence 35778888888754331 12 4578999999999998863 21 2678999999999999999976667
Q ss_pred cceEEEEcCCCC----EEEEEEcCc-eeeccCCCceEEEEEEcC
Q psy11930 168 TPIFVIKNGAGD----IVLRIEGPI-CRYSMCGGDVDFKILSRD 206 (274)
Q Consensus 168 ~~~f~I~d~~g~----~~~~I~Gp~-~~~~~cc~~~~F~I~~~~ 206 (274)
.++|+|++.++. ++++|+-.. +.. ...|+|.+.+
T Consensus 99 ~~~~~v~~~~~~~~~~~i~~vrk~~~~~~-----~~~~~V~~~~ 137 (217)
T 1zxu_A 99 HDRWQVFRGGSTDQRDLLYTVKRSSMLQL-----KTKLDVFLGH 137 (217)
T ss_dssp -CEEEEEETTCCCGGGEEEEEEC------------CCEEEEETT
T ss_pred CcEEEEEcCCCCCCCcEEEEEEEeccccC-----CCeEEEEECC
Confidence 899999988764 689998762 211 4578898764
No 3
>2lqc_B Voltage-dependent L-type calcium channel subunit; metal binding protein-transport protein complex; NMR {Homo sapiens}
Probab=35.03 E-value=12 Score=20.60 Aligned_cols=11 Identities=45% Similarity=0.930 Sum_probs=8.7
Q ss_pred cchhhcccccc
Q psy11930 21 TLSWRKAIKST 31 (274)
Q Consensus 21 ~~~~~~~~~~~ 31 (274)
.||||-||...
T Consensus 5 aLSWQAAIdAA 15 (26)
T 2lqc_B 5 ALSWQAAIDAA 15 (26)
Confidence 48999999754
No 4
>1msz_A DNA-binding protein smubp-2; R3H fold; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=26.33 E-value=17 Score=26.31 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=22.5
Q ss_pred ccCCceEEEEeCCCCCHHHHHHHHHHHHH
Q psy11930 226 FTDADYFGISFPGDLDVRMKAVMLGACFL 254 (274)
Q Consensus 226 ft~~D~y~I~Fp~dld~~~KallLaa~il 254 (274)
|-+.+.-.++||+.++..+|++|=..|--
T Consensus 28 F~~~~~~~l~FP~sLs~~eR~~IH~lA~~ 56 (86)
T 1msz_A 28 FMASKKMQLEFPPSLNSHDRLRVHQIAEE 56 (86)
T ss_dssp HHHHTCSEEEECTTCCSHHHHHHHHHHHH
T ss_pred HhcCCCcEEEcCCCCCHHHHHHHHHHHHH
Confidence 44556678999999999999988665543
No 5
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=20.76 E-value=72 Score=23.60 Aligned_cols=22 Identities=14% Similarity=0.200 Sum_probs=17.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHHH
Q psy11930 231 YFGISFPGDLDVRMKAVMLGAC 252 (274)
Q Consensus 231 ~y~I~Fp~dld~~~KallLaa~ 252 (274)
.+.|.||..++.++|.+|-..+
T Consensus 73 ~~~V~~P~~Ls~~q~~~l~~l~ 94 (109)
T 3i38_A 73 VIKIVMPTKPDEKARELWQQLA 94 (109)
T ss_dssp EEEECCCSSCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4667899999999999887654
No 6
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=19.95 E-value=68 Score=25.88 Aligned_cols=20 Identities=30% Similarity=0.472 Sum_probs=16.7
Q ss_pred eEEEEeCCCCCHHHHHHHHH
Q psy11930 231 YFGISFPGDLDVRMKAVMLG 250 (274)
Q Consensus 231 ~y~I~Fp~dld~~~KallLa 250 (274)
.|.|.||..++.++|.+|-.
T Consensus 158 ~~~V~~P~~Ls~~q~~~l~~ 177 (180)
T 2q2g_A 158 EFDICFPKSLTPEQKKLIKE 177 (180)
T ss_dssp EEEEECCSCCCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36788999999999998754
No 7
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=19.62 E-value=70 Score=25.87 Aligned_cols=20 Identities=20% Similarity=0.385 Sum_probs=16.6
Q ss_pred eEEEEeCCCCCHHHHHHHHH
Q psy11930 231 YFGISFPGDLDVRMKAVMLG 250 (274)
Q Consensus 231 ~y~I~Fp~dld~~~KallLa 250 (274)
+|.|.||..++.++|.+|-.
T Consensus 158 ~~~V~~P~~ls~~q~~~l~~ 177 (181)
T 3agx_A 158 EFEVIFPERIPQTSRTVLEQ 177 (181)
T ss_dssp EEEEECCSCCCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36688999999999998754
No 8
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=17.90 E-value=72 Score=17.06 Aligned_cols=13 Identities=8% Similarity=0.281 Sum_probs=7.0
Q ss_pred EEEcCCCCEEEEE
Q psy11930 172 VIKNGAGDIVLRI 184 (274)
Q Consensus 172 ~I~d~~g~~~~~I 184 (274)
.|+|.+|+.+..+
T Consensus 8 ~IYD~~g~~i~~l 20 (26)
T 2v2f_A 8 KIYDNKNQLIADL 20 (26)
T ss_pred EEEeCCCCEeeec
Confidence 3555566555544
No 9
>3b42_A GSU0935, methyl-accepting chemotaxis protein, putative; PAS domain, C-type heme containing sensor, unknown function, signaling protein; HET: HEM; 1.90A {Geobacter sulfurreducens}
Probab=17.26 E-value=1.5e+02 Score=22.43 Aligned_cols=75 Identities=13% Similarity=0.106 Sum_probs=43.8
Q ss_pred ceEEEEcCCCCEEEEEEee---cCeeeecccCCCCCeEEEEEeCCCCeEEEEEeecccccCCCCCcccEEEEEcCCCCEE
Q psy11930 81 NKFTVKNAQGQKVFLAVEI---NDCCTRNCCGPLRPFEMKVLDNYKNEVIHFERPLACDSCWFPCCLQSLNVFSPPGALI 157 (274)
Q Consensus 81 N~Y~I~d~~Gq~v~~~~E~---s~~~~R~~~~~~R~f~l~v~D~~g~~vl~i~Rp~~c~~cc~~cc~~~~~V~~p~G~~i 157 (274)
-+-.|+++.| .+| .... .+...+.-+...++... ..+.+|..++++-.|+.=.--|..|-. . .|.++
T Consensus 48 ~~irI~r~~g-~~f-g~~~~~~~d~~~~~al~~~~~~~~-~~~~~g~~~l~~~~Pi~a~~~Cl~CH~-~------~g~VL 117 (135)
T 3b42_A 48 MDLRVFDEQA-KEV-SPTPSQTPNAKIQQAIAAGRTLEF-KETLDGKRTLSLVLPFPNEQRCQSCHD-A------GAAYL 117 (135)
T ss_dssp CEEEEEETTS-BEE-ESSCCSSBCHHHHHHHHHTSCEEE-EEEETTEEEEEEEEEEECCGGGGGTSC-T------TCSEE
T ss_pred eEEEEECChh-hhc-CCCcccCCCHHHHHHHhcCCceEE-EEcCCCcEEEEEEEecccCcChHhhcC-C------CCeeE
Confidence 4677888888 666 2211 12223333323355554 456667777999999753333444432 1 79999
Q ss_pred EEEEeecc
Q psy11930 158 GSIEQEWS 165 (274)
Q Consensus 158 G~I~q~~~ 165 (274)
|.|.-.++
T Consensus 118 G~l~v~~s 125 (135)
T 3b42_A 118 GGLLVTTS 125 (135)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 99976544
No 10
>2jxf_A NS4B(40-69), genome polyprotein; membrane associated segment, acetylation, apoptosis, ATP- binding, capsid protein, cytoplasm, endoplasmic reticulum; NMR {Synthetic}
Probab=16.73 E-value=13 Score=21.29 Aligned_cols=11 Identities=27% Similarity=0.682 Sum_probs=8.4
Q ss_pred CCccccccCCC
Q psy11930 50 PPGLEYLTTVD 60 (274)
Q Consensus 50 p~gLe~L~~l~ 60 (274)
-+|++||+++.
T Consensus 19 vSGIQYLaGLs 29 (30)
T 2jxf_A 19 ISGIQYLAGLS 29 (30)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHhhcC
Confidence 36888988875
Done!