RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy11930
         (274 letters)



>gnl|CDD|217740 pfam03803, Scramblase, Scramblase.  Scramblase is palmitoylated and
           contains a potential protein kinase C phosphorylation
           site. Scramblase exhibits Ca2+-activated phospholipid
           scrambling activity in vitro. There are also possible
           SH3 and WW binding motifs. Scramblase is involved in the
           redistribution of phospholipids after cell activation or
           injury.
          Length = 223

 Score =  291 bits (747), Expect = e-100
 Identities = 109/224 (48%), Positives = 150/224 (66%), Gaps = 1/224 (0%)

Query: 39  MNIPQGRPANCPPGLEYLTTVDQLMVKQKVELLEALIGWETNNKFTVKNAQGQKVFLAVE 98
           M+ P   PANCP GLEYL  +D ++V Q++E LE   G+ET N++ +KN  GQ ++ A+E
Sbjct: 1   MSGPGQPPANCPAGLEYLLQLDTILVHQQIEPLEIFTGFETKNRYVIKNVNGQPLYYAME 60

Query: 99  INDCCTRNCCGPLRPFEMKVLDNYKNEVIHFERPLACDSCWFPCCLQSLNVFSPPGALIG 158
            ++CC R CCG  RPF M++ DN+ NEV+  +RP  C SC  P CLQ   + +PPG  IG
Sbjct: 61  RSNCCARQCCGTHRPFVMRITDNFGNEVLTLKRPFRCCSCCCPSCLQEQEIQAPPGTTIG 120

Query: 159 SIEQEWSLLTPIFVIKNGAGDIVLRIEGPICRYSMCGGDVDFKILSRDGQTEVGRISKQW 218
            + Q W L  P + +++  G+ VL I GP C+ S CGGD DF + + DG   VG IS++W
Sbjct: 121 EVLQTWHLWRPNYELQDADGNQVLLIFGPCCKCS-CGGDWDFPVKTADGSEVVGSISRKW 179

Query: 219 SGLLREAFTDADYFGISFPGDLDVRMKAVMLGACFLIDAMFYEK 262
            GL REAFTDAD + + FP DLDV++KAV+LGA FLID  ++E+
Sbjct: 180 GGLGREAFTDADTYVVRFPLDLDVKLKAVLLGAAFLIDFDYFER 223


>gnl|CDD|199872 cd06252, M14_ASTE_ASPA_like_2, Peptidase M14 Succinylglutamate
           desuccinylase (ASTE)/aspartoacylase (ASPA)-like;
           uncharacterized subgroup.  A functionally
           uncharacterized subgroup of the Succinylglutamate
           desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily
           which is part of the M14 family of
           metallocarboxypeptidases. ASTE catalyzes the fifth and
           last step in arginine catabolism by the arginine
           succinyltransferase pathway, and aspartoacylase (ASPA,
           also known as aminoacylase 2, and ACY-2; EC:3.5.1.15)
           cleaves N-acetyl L-aspartic acid (NAA) into aspartate
           and acetate. NAA is abundant in the brain, and
           hydrolysis of NAA by ASPA may help maintain white
           matter. ASPA is an NAA scavenger in other tissues.
           Mutations in the gene encoding ASPA cause Canavan
           disease (CD), a fatal progressive neurodegenerative
           disorder involving dysmyelination and spongiform
           degeneration of white matter in children. This enzyme
           binds zinc which is necessary for activity. Measurement
           of elevated NAA levels in urine is used in the diagnosis
           of CD.
          Length = 318

 Score = 29.9 bits (68), Expect = 1.3
 Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 8/28 (28%)

Query: 169 PIFVIKNGAGDIVLRI--------EGPI 188
           PI VIKNG G  VL          EG I
Sbjct: 25  PITVIKNGDGPTVLLTGGNHGDEYEGQI 52


>gnl|CDD|227231 COG4894, COG4894, Uncharacterized conserved protein [Function
           unknown].
          Length = 159

 Score = 29.0 bits (65), Expect = 1.6
 Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 20/112 (17%)

Query: 159 SIEQEWSLLTPIFVIKNGAGDIV----------LRIEGPICRYSMCGGDVDFKILSRDGQ 208
           SIEQ+   L P + I +G G +            + E     + + G   D +    DG+
Sbjct: 57  SIEQKLLSLLPRYEISDGGGTVCEVRKKVTFSRDKFEIDGLNWEIHGNIWDDEFKLTDGE 116

Query: 209 TEVGRISKQWSGLLREAFTDADYFGISFPGDLDVRMKAVMLGACFLIDAMFY 260
                +SK+W       F+  D + +    D D     +++     +D + Y
Sbjct: 117 NVRAEVSKKW-------FSWRDTYHLQVAPDEDA---LLIIAIAVALDMVLY 158


>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated.
          Length = 463

 Score = 29.4 bits (67), Expect = 2.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 228 DADYFGISFPGDLDVRMKAVM 248
            A  +G+S  G + V  KAVM
Sbjct: 66  RAAEYGVSVGGPVSVDFKAVM 86


>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed.
          Length = 673

 Score = 28.6 bits (65), Expect = 4.2
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 199 DFKILSRDGQTEVGRISKQW--SGLLREAFT-DADYFGISFPG 238
           ++   S + Q  V    K+W   GL     + DA YFG   PG
Sbjct: 200 EWITRSGELQPNVANKMKEWLEEGLQDWDISRDAPYFGFEIPG 242


>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK;
           Provisional.
          Length = 1019

 Score = 28.4 bits (64), Expect = 4.7
 Identities = 28/112 (25%), Positives = 42/112 (37%), Gaps = 17/112 (15%)

Query: 3   YQGSKDFFMPNKREDSYSTLSWRKAIKSTLWKNGGWMNIPQGRPANCPPGLEYLTTVDQL 62
           Y G  D F  N R+  + T      + +TL K GG++ + Q     C   LE   +    
Sbjct: 352 YSGGADQF--NIRD-IFDTGIRPITMATTLLKPGGYLRLTQ-----CARELE--GSDAWG 401

Query: 63  MVKQKVELLEALIGWETNNKFTVKNAQGQ---KVFLAVEINDC----CTRNC 107
                VE L  L       ++T K+ +     KV   + + DC    C   C
Sbjct: 402 FDGVDVEKLNRLAADALTMEYTQKHWKPVESRKVAEDLPLTDCYVAPCVTAC 453


>gnl|CDD|217741 pfam03806, ABG_transport, AbgT putative transporter family. 
          Length = 502

 Score = 27.7 bits (62), Expect = 6.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)

Query: 156 LIGSIEQEWSLLTPIFV 172
           LIGS   +W++L PIFV
Sbjct: 396 LIGSASAKWAILAPIFV 412


>gnl|CDD|133453 cd05311, NAD_bind_2_malic_enz, NAD(P) binding domain of malic
           enzyme (ME), subgroup 2.  Malic enzyme (ME), a member of
           the amino acid dehydrogenase (DH)-like domain family,
           catalyzes the oxidative decarboxylation of L-malate to
           pyruvate in the presence of cations (typically  Mg++ or
           Mn++) with the concomitant reduction of cofactor NAD+ or
           NADP+.  ME has been found in all organisms, and plays
           important roles in diverse metabolic pathways such as
           photosynthesis and lipogenesis. This enzyme generally
           forms homotetramers. The conversion of malate to
           pyruvate by ME typically involves oxidation of malate to
           produce oxaloacetate, followed by decarboxylation of
           oxaloacetate to produce pyruvate and CO2.  This
           subfamily consists primarily of archaeal and bacterial
           ME.  Amino acid DH-like NAD(P)-binding domains are
           members of the Rossmann fold superfamily and include
           glutamate, leucine, and phenylalanine DHs, methylene
           tetrahydrofolate DH, methylene-tetrahydromethanopterin
           DH, methylene-tetrahydropholate DH/cyclohydrolase,
           Shikimate DH-like proteins, malate oxidoreductases, and
           glutamyl tRNA reductase. Amino acid DHs catalyze the
           deamination of amino acids to keto acids with NAD(P)+ as
           a cofactor. The NAD(P)-binding Rossmann fold superfamily
           includes a wide variety of protein families including
           NAD(P)- binding domains of alcohol DHs,
           tyrosine-dependent oxidoreductases,
           glyceraldehyde-3-phosphate DH, lactate/malate DHs,
           formate/glycerate DHs, siroheme synthases,
           6-phosphogluconate DH, amino acid DHs, repressor rex,
           NAD-binding potassium channel  domain, CoA-binding, and
           ornithine cyclodeaminase-like domains. These domains
           have an alpha-beta-alpha configuration. NAD binding
           involves numerous hydrogen and van der Waals contacts.
          Length = 226

 Score = 27.6 bits (62), Expect = 7.1
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 218 WSGLLREAFTDADYF-GISFPGDLDVRMKAVM 248
             G L+EA   AD F G+S PG +   M   M
Sbjct: 87  TGGTLKEALKGADVFIGVSRPGVVKKEMIKKM 118


>gnl|CDD|225525 COG2978, AbgT, Putative p-aminobenzoyl-glutamate transporter
           [Coenzyme metabolism].
          Length = 516

 Score = 27.6 bits (62), Expect = 7.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 156 LIGSIEQEWSLLTPIFV 172
            IGS   +W++L PIFV
Sbjct: 408 FIGSASAKWAILAPIFV 424


>gnl|CDD|190460 pfam02877, PARP_reg, Poly(ADP-ribose) polymerase, regulatory
           domain.  Poly(ADP-ribose) polymerase catalyzes the
           covalent attachment of ADP-ribose units from NAD+ to
           itself and to a limited number of other DNA binding
           proteins, which decreases their affinity for DNA.
           Poly(ADP-ribose) polymerase is a regulatory component
           induced by DNA damage. The carboxyl-terminal region is
           the most highly conserved region of the protein.
           Experiments have shown that a carboxyl 40 kDa fragment
           is still catalytically active.
          Length = 130

 Score = 26.8 bits (60), Expect = 7.6
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 9/38 (23%)

Query: 40  NIPQ--GRPANCPPGLEYLTTVDQLMVKQKVELLEALI 75
            IP   G     PP    + T +   +K+K+E+LEAL 
Sbjct: 75  LIPHDFGM--KKPP---VIDTEEL--LKEKLEMLEALQ 105


>gnl|CDD|132039 TIGR02994, ectoine_eutE, ectoine utilization protein EutE.  Members
           of this family, part of the succinylglutamate
           desuccinylase / aspartoacylase family (pfam04952),
           belong to ectoine utilization operons, as found in
           Sinorhizobium meliloti 1021 (where it the operon is
           known to be induced by ectoine), Mesorhizobium loti,
           Silicibacter pomeroyi, Agrobacterium tumefaciens, and
           Pseudomonas putida.
          Length = 325

 Score = 27.5 bits (61), Expect = 8.9
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 9/39 (23%)

Query: 164 W-SLLTPIFVIKNGAGDIVL--------RIEGPICRYSM 193
           W S++ PI VIKNG G   L          EGPI  + +
Sbjct: 32  WGSVMIPITVIKNGIGPTALLTGGNHGDEYEGPIALFEL 70


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.140    0.452 

Gapped
Lambda     K      H
   0.267   0.0705    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,004,537
Number of extensions: 1308772
Number of successful extensions: 809
Number of sequences better than 10.0: 1
Number of HSP's gapped: 808
Number of HSP's successfully gapped: 16
Length of query: 274
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 179
Effective length of database: 6,723,972
Effective search space: 1203590988
Effective search space used: 1203590988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.2 bits)