RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11930
         (274 letters)



>d2q4ma1 d.23.1.2 (A:24-212) Hypothetical protein At5g01750 {Thale
           cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 189

 Score = 38.0 bits (88), Expect = 4e-04
 Identities = 28/211 (13%), Positives = 69/211 (32%), Gaps = 50/211 (23%)

Query: 61  QLMVKQKVELLEALIGWETNNKFTVKNAQGQKVFLAVEINDCCTRNCCGPLRPFEMKVLD 120
            + + +K+  L       T+  F + +  G  +F          +     L   +  +LD
Sbjct: 16  DMAIVRKMMSL-------TDGNFVITDVNGNLLFKV--------KEPVFGLHD-KRVLLD 59

Query: 121 NYKNEVIHFERP-LACDSCWFPCCLQSLNVFSPPGALIGSIEQEWSLLTPIFVIK----- 174
                V+      ++    W         VF       GS +Q       ++ +K     
Sbjct: 60  GSGTPVVTLREKMVSMHDRW--------QVFRG-----GSTDQR----DLLYTVKRSSML 102

Query: 175 --NGAGDIVL--RIEGPICRYSMCG--GDVDFKILSRDGQTEVGRISKQWSGLLREAFTD 228
                 D+ L    +   C + + G   +    + + +    V ++ ++ +  ++  F  
Sbjct: 103 QLKTKLDVFLGHNKDEKRCDFRVKGSWLERSCVVYAGESDAIVAQMHRKHT--VQSVFLG 160

Query: 229 ADYFGISFPGDLDVRMKAVMLGACFLIDAMF 259
            D F ++   ++D    A +     ++D + 
Sbjct: 161 KDNFSVTVYPNVDY---AFIASLVVILDDVN 188


>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 134

 Score = 26.9 bits (58), Expect = 1.9
 Identities = 12/117 (10%), Positives = 23/117 (19%), Gaps = 10/117 (8%)

Query: 82  KFTVKNAQGQ---------KVFLAVEINDCCTRNCCGPLRPFEMKVLDNYKNEVIHFERP 132
           +FT     G          K  +       C           ++   +     V    R 
Sbjct: 6   QFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRA 65

Query: 133 LACDSCWFPCCLQSLNV-FSPPGALIGSIEQEWSLLTPIFVIKNGAGDIVLRIEGPI 188
                  F           +    +I +          +F   +G    V      +
Sbjct: 66  DVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPAFVFYRADGTSTFVNNPTAAM 122


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.140    0.452 

Gapped
Lambda     K      H
   0.267   0.0589    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,105,030
Number of extensions: 53233
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 5
Length of query: 274
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 190
Effective length of database: 1,254,276
Effective search space: 238312440
Effective search space used: 238312440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.1 bits)