BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11933
(79 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZMM5|ZN706_CHICK Zinc finger protein 706 OS=Gallus gallus GN=ZNF706 PE=4 SV=1
Length = 76
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 63/79 (79%), Gaps = 3/79 (3%)
Query: 1 MARGQQKLQSQAKAQEKQAKAKKQQGHSLLDQKKAAQKALVHACVVCKAQMPDPKTYKQH 60
MARGQQK+QSQ K +KQA+ KK+QGH DQK AA+ AL++ C VC+ QMPDPKT+KQH
Sbjct: 1 MARGQQKIQSQQKNAKKQAEQKKKQGH---DQKAAAKAALIYTCTVCRTQMPDPKTFKQH 57
Query: 61 FENKHPKNDLPEDLKDVQA 79
FE+KHPK LP +L DVQA
Sbjct: 58 FESKHPKTPLPPELADVQA 76
>sp|Q9D115|ZN706_MOUSE Zinc finger protein 706 OS=Mus musculus GN=Znf706 PE=2 SV=1
Length = 76
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 62/79 (78%), Gaps = 3/79 (3%)
Query: 1 MARGQQKLQSQAKAQEKQAKAKKQQGHSLLDQKKAAQKALVHACVVCKAQMPDPKTYKQH 60
MARGQQK+QSQ K +KQA KK+QGH DQK AA+ AL++ C VC+ QMPDPKT+KQH
Sbjct: 1 MARGQQKIQSQQKNAKKQAGQKKKQGH---DQKAAAKAALIYTCTVCRTQMPDPKTFKQH 57
Query: 61 FENKHPKNDLPEDLKDVQA 79
FE+KHPK LP +L DVQA
Sbjct: 58 FESKHPKTPLPPELADVQA 76
>sp|Q9Y5V0|ZN706_HUMAN Zinc finger protein 706 OS=Homo sapiens GN=ZNF706 PE=1 SV=1
Length = 76
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 62/79 (78%), Gaps = 3/79 (3%)
Query: 1 MARGQQKLQSQAKAQEKQAKAKKQQGHSLLDQKKAAQKALVHACVVCKAQMPDPKTYKQH 60
MARGQQK+QSQ K +KQA KK+QGH DQK AA+ AL++ C VC+ QMPDPKT+KQH
Sbjct: 1 MARGQQKIQSQQKNAKKQAGQKKKQGH---DQKAAAKAALIYTCTVCRTQMPDPKTFKQH 57
Query: 61 FENKHPKNDLPEDLKDVQA 79
FE+KHPK LP +L DVQA
Sbjct: 58 FESKHPKTPLPPELADVQA 76
>sp|O88532|ZFR_MOUSE Zinc finger RNA-binding protein OS=Mus musculus GN=Zfr PE=1 SV=2
Length = 1074
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 41 VHACVVCKAQMPDPKTYKQHFEN-KHPK 67
+H C VCK P+TYK+H E KH K
Sbjct: 330 IHYCDVCKISCAGPQTYKEHLEGQKHKK 357
>sp|Q5U231|ZFR_XENTR Zinc finger RNA-binding protein OS=Xenopus tropicalis GN=zfr PE=2
SV=1
Length = 1065
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 41 VHACVVCKAQMPDPKTYKQHFEN-KHPK 67
+H C VCK P+TYK+H E KH K
Sbjct: 330 IHYCDVCKISCAGPQTYKEHLEGQKHKK 357
>sp|Q96KR1|ZFR_HUMAN Zinc finger RNA-binding protein OS=Homo sapiens GN=ZFR PE=1 SV=2
Length = 1074
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 41 VHACVVCKAQMPDPKTYKQHFEN-KHPK 67
+H C VCK P+TYK+H E KH K
Sbjct: 330 IHYCDVCKISCAGPQTYKEHLEGQKHKK 357
>sp|Q6PCR6|ZFR_DANRE Zinc finger RNA-binding protein OS=Danio rerio GN=zfr PE=2 SV=2
Length = 1074
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 41 VHACVVCKAQMPDPKTYKQHFEN 63
+H C VCK P+TYK+H E
Sbjct: 323 IHYCDVCKISCAGPQTYKEHLEG 345
>sp|Q5REX3|ZFR_PONAB Zinc finger RNA-binding protein OS=Pongo abelii GN=ZFR PE=2 SV=1
Length = 1074
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 41 VHACVVCKAQMPDPKTYKQHFEN-KHPK 67
+H C VCK P+TYK+H E KH K
Sbjct: 330 IHYCDVCKISCAGPQTYKEHLEGQKHKK 357
>sp|Q6GPM1|ZFR_XENLA Zinc finger RNA-binding protein OS=Xenopus laevis GN=zfr PE=2 SV=1
Length = 1054
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 41 VHACVVCKAQMPDPKTYKQHFEN-KHPK 67
+H C VCK P+TYK+H E KH K
Sbjct: 321 IHYCDVCKISCAGPQTYKEHLEGQKHKK 348
>sp|Q60416|SRBP1_CRIGR Sterol regulatory element-binding protein 1 OS=Cricetulus griseus
GN=SREBF1 PE=2 SV=1
Length = 1133
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 15 QEKQAKAKKQQGHSLLDQKKAAQKALVHACVVC 47
++ Q KA++ H +LD+ + A ALV C+ C
Sbjct: 457 EDSQVKAQRLHSHGMLDRSRLALCALVFLCLTC 489
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.122 0.341
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,287,020
Number of Sequences: 539616
Number of extensions: 901977
Number of successful extensions: 7491
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 7210
Number of HSP's gapped (non-prelim): 231
length of query: 79
length of database: 191,569,459
effective HSP length: 50
effective length of query: 29
effective length of database: 164,588,659
effective search space: 4773071111
effective search space used: 4773071111
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)