RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11933
(79 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.003
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 13/54 (24%)
Query: 30 LDQKKAAQKALVHACVVCKAQMP------DPKTYKQHFENKHPKND-LPEDLKD 76
L+QK + H A K YK + + PK + L + D
Sbjct: 503 LEQK------IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Score = 27.9 bits (61), Expect = 0.35
Identities = 11/78 (14%), Positives = 20/78 (25%), Gaps = 15/78 (19%)
Query: 6 QKLQSQAKAQEKQA----KAKKQQGHSLLDQ-KKAAQKALVHACVVCKAQMPDPKTYKQH 60
Q L + + + G + D K L + +P Y++
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL-EPAEYRKM 374
Query: 61 FENKHPKNDL---PEDLK 75
F+ L P
Sbjct: 375 FD------RLSVFPPSAH 386
>1wvk_A AT2G23090/F21P24.15; structural genomics, protein structure
initiative, cell free, center for eukaryotic structural
genomics, CESG; NMR {Arabidopsis thaliana} SCOP:
g.82.1.1
Length = 86
Score = 30.4 bits (68), Expect = 0.018
Identities = 16/64 (25%), Positives = 23/64 (35%)
Query: 9 QSQAKAQEKQAKAKKQQGHSLLDQKKAAQKALVHACVVCKAQMPDPKTYKQHFENKHPKN 68
+S + KAK S L+ K A C+ ++H E KHPK
Sbjct: 16 KSAMARAKNLEKAKAAGKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKA 75
Query: 69 DLPE 72
D+
Sbjct: 76 DVVA 79
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 29.4 bits (65), Expect = 0.100
Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 4/57 (7%)
Query: 9 QSQAKAQEKQAKAKKQQGHSLLDQKKAAQKALVHACVVCKAQMPDPKTYKQHFENKH 65
+ A A + A Q + + + C VC A+ +H + H
Sbjct: 88 AAVANATKPAAVVSDPQSMKVTPIVNPSS----YVCNVCNARFSTMSALSEHLRSDH 140
>1n0e_A Protein MRAZ; cell division and cell WALL biosynthesis protein,
structural genomics, BSGC structure funded by NIH; 2.70A
{Mycoplasma pneumoniae} SCOP: b.129.1.2 PDB: 1n0f_A
1n0g_A
Length = 166
Score = 24.6 bits (54), Expect = 3.1
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 53 DPKTYKQHFENKHPKNDLPEDLKDVQ 78
D K Y+ + N + E +KDV+
Sbjct: 141 DKKLYEDYLANSESLETVAERMKDVK 166
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.0 bits (54), Expect = 3.4
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 39 ALVHACVVCKAQMPDPKTYKQHFE 62
L H V K P + + +
Sbjct: 245 QLAHYVVTAKLLGFTPGELRSYLK 268
>3p54_A Envelope glycoprotein; viral envelope proteins, structural
genomics, fusion peptide antibody epitopes, flavivirus;
2.10A {Japanese encephalitis virus} PDB: 2i69_A* 3i50_E
3ixx_A 2of6_A 3iyw_A* 2hg0_A* 1pjw_A 1s6n_A 2p5p_A
1ztx_E
Length = 406
Score = 24.6 bits (53), Expect = 4.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 17 KQAKAKKQQGHSLLDQKKAAQKALVHACVV 46
+ A A KQ +L Q+ +AL A VV
Sbjct: 243 EGAHATKQSVVALGSQEGGLHQALAGAIVV 272
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 24.6 bits (53), Expect = 5.0
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 6 QKLQSQAKAQEKQAKAKKQQGH---SLLDQKKAAQKALV 41
K AKA E+ + + L+ K QKA+V
Sbjct: 634 VKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIV 672
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 22.9 bits (48), Expect = 5.1
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 42 HACVVCKAQMPDPKTYKQHFENKHPK 67
++C VC+ + + K H + HP+
Sbjct: 10 YSCPVCEKSFSEDRLIKSHIKTNHPE 35
>4fg0_A Polyprotein; viral envelope proteins, structural genomics, fusion
peptide antibody epitopes, flavivirus; 3.90A {St}
Length = 407
Score = 24.2 bits (52), Expect = 5.2
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 17 KQAKAKKQQGHSLLDQKKAAQKALVHACVV 46
++ A KQ +L Q+ A AL A
Sbjct: 243 EEPHATKQTVVALGSQEGALHTALAGAIPA 272
>3cra_A Protein MAZG; tandem-repeat domain, hydrolase; 2.10A {Escherichia
coli} PDB: 3crc_A*
Length = 265
Score = 24.0 bits (53), Expect = 5.6
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 11 QAKAQEKQAKAKKQQGHSLLDQKKAAQKALVHA 43
Q K +E+ KA+ S LD + AL+ A
Sbjct: 119 QIKTEERAQKAQH----SALDDIPRSLPALMRA 147
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.122 0.341
Gapped
Lambda K H
0.267 0.0566 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,061,500
Number of extensions: 46526
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 36
Length of query: 79
Length of database: 6,701,793
Length adjustment: 48
Effective length of query: 31
Effective length of database: 5,361,585
Effective search space: 166209135
Effective search space used: 166209135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.8 bits)