RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11933
         (79 letters)



>d1wvka_ g.82.1.1 (A:) Expressed protein At2g23090/F21P24.15
          {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 86

 Score = 30.2 bits (68), Expect = 0.008
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 11 QAKAQEKQAKAKKQQGHSLLDQKKAAQKALVHACVVCKAQMP---DPKTYKQHFENKHPK 67
          Q  A  +    +K +      Q +A +KA+   C VC             ++H E KHPK
Sbjct: 15 QKSAMARAKNLEKAKAAGKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPK 74

Query: 68 NDLPE 72
           D+  
Sbjct: 75 ADVVA 79


>d1svba2 f.10.1.1 (A:1-302) Envelope glycoprotein {Tick-borne
           encephalitis virus [TaxId: 11084]}
          Length = 302

 Score = 25.1 bits (55), Expect = 1.0
 Identities = 9/30 (30%), Positives = 11/30 (36%)

Query: 17  KQAKAKKQQGHSLLDQKKAAQKALVHACVV 46
               A K   ++L DQ     KAL    V 
Sbjct: 245 GAPHAVKMDVYNLGDQTGVLLKALAGVPVA 274


>d1eysh1 b.41.1.1 (H:59-259) Photosynthetic reaction centre
          {Thermochromatium tepidum [TaxId: 1050]}
          Length = 201

 Score = 24.8 bits (54), Expect = 1.1
 Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 3/28 (10%)

Query: 51 MPDPKTYK-QH--FENKHPKNDLPEDLK 75
          +PDPKT+   H       P+ + P  + 
Sbjct: 3  LPDPKTFVLPHNGGTVVAPRVEAPVAVN 30


>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli
           [TaxId: 562]}
          Length = 168

 Score = 24.8 bits (54), Expect = 1.2
 Identities = 7/19 (36%), Positives = 8/19 (42%)

Query: 53  DPKTYKQHFENKHPKNDLP 71
           D + Y   FEN     DL 
Sbjct: 84  DGQVYNIAFENGEKVQDLQ 102


>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId:
           562]}
          Length = 219

 Score = 23.4 bits (50), Expect = 4.1
 Identities = 5/20 (25%), Positives = 11/20 (55%)

Query: 53  DPKTYKQHFENKHPKNDLPE 72
           + K ++Q +E+  P+  L  
Sbjct: 136 EGKIHRQIYEHGVPQAPLAV 155


>d2nysa1 b.136.1.2 (A:3-119) Uncharacterized protein AGR_C_3712p
          {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 117

 Score = 23.0 bits (50), Expect = 4.3
 Identities = 4/16 (25%), Positives = 6/16 (37%)

Query: 61 FENKHPKNDLPEDLKD 76
          F    P   + + LK 
Sbjct: 41 FLTGAPGVRISQHLKS 56


>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]}
          Length = 456

 Score = 22.8 bits (48), Expect = 6.2
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 11 QAKAQEKQAKAKKQQGHSLLDQKKAAQKALVHAC 44
           A A  K+A AK  +   LL ++KA   A+  A 
Sbjct: 43 HALALTKRAAAKVNEDLGLLSEEKA--SAIRQAA 74


>d1ok8a2 f.10.1.1 (A:1-297) Envelope glycoprotein {Dengue virus type
           2 [TaxId: 11060]}
          Length = 297

 Score = 22.4 bits (48), Expect = 7.6
 Identities = 11/30 (36%), Positives = 13/30 (43%)

Query: 17  KQAKAKKQQGHSLLDQKKAAQKALVHACVV 46
           K   AKKQ    L  Q+ A   AL  A  +
Sbjct: 241 KNPHAKKQDVVVLGSQEGAMHTALTGATEI 270


>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat
          (Rattus norvegicus) [TaxId: 10116]}
          Length = 124

 Score = 22.4 bits (47), Expect = 8.8
 Identities = 7/56 (12%), Positives = 19/56 (33%)

Query: 5  QQKLQSQAKAQEKQAKAKKQQGHSLLDQKKAAQKALVHACVVCKAQMPDPKTYKQH 60
           + +    K +  + +   +    L   +K      V+ C++C  Q+    +    
Sbjct: 12 NRVIARAEKMETMEQERIGRLVDRLETMRKNVAGDGVNRCILCGEQLGMLGSASVV 67


>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia
          coli [TaxId: 562]}
          Length = 459

 Score = 22.5 bits (47), Expect = 9.6
 Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 2/34 (5%)

Query: 11 QAKAQEKQAKAKKQQGHSLLDQKKAAQKALVHAC 44
          +     K+A A   +    + +  A   A++ AC
Sbjct: 49 RGMVMVKKAAAMANKELQTIPKSVA--NAIIAAC 80


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.122    0.341 

Gapped
Lambda     K      H
   0.267   0.0697    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 254,130
Number of extensions: 8763
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 18
Length of query: 79
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 34
Effective length of database: 1,789,746
Effective search space: 60851364
Effective search space used: 60851364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (21.9 bits)