BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11935
(1334 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FUG|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|L Chain L, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|U Chain U, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|3I9V|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3I9V|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3IAM|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAM|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAS|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|L Chain L, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|U Chain U, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3M9S|3 Chain 3, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|3M9S|C Chain C, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|2YBB|3 Chain 3, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|4HEA|3 Chain 3, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|D Chain D, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 783
Score = 146 bits (368), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 165/643 (25%), Positives = 257/643 (39%), Gaps = 121/643 (18%)
Query: 687 AACAMPVMKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSD 746
A+C V G V T S++ R A+ G++EF L+NHPLDCP CD+GG C+LQD+++ +G
Sbjct: 81 ASCVTAVADGMVVDTLSDVVREAQAGMVEFTLLNHPLDCPTCDKGGACELQDRTVEYG-- 138
Query: 747 RSRFTDIDFSGKSGTYTRVTRQRSWGLIPSRVFLQSINRHWIGPVAACAMPVMKGWRVKT 806
Y + ++ GP+ +PV T
Sbjct: 139 --------------LYEKYYQK--------------------GPLE---LPVY------T 155
Query: 807 NSEMTRRAREGVMEFLLVNHPL------DCPICDQGGECDLQDQSMAFGNDLGTTGRGSD 860
E TRR + +HPL D C C + + L RG
Sbjct: 156 RFEFTRRHVDK-------HHPLSPFVILDRERCIHCKRCVRYFEEVPGDEVLDFIERGVH 208
Query: 861 MQVGTYVEKLFLSELSGNVIDLCPVGALTSKPYSFTARPWETRKTESVDVLDAVGSNIIV 920
+GT ++ S SGN+ D+CPVGAL F AR WE +T + L VG I
Sbjct: 209 TFIGT-MDFGLPSGFSGNITDICPVGALLDLTARFRARNWEMEETPTTCALCPVGCGITA 267
Query: 921 STRTGEVLRVLPRLNEDINEEWLADKGRFAYDGLKRQRLLTPFVRNCDGQLVATEWEDAL 980
TR+GE+LR+ R ++NE W+ D GRF ++ + RL TP VR +G+LV WE+A
Sbjct: 268 DTRSGELLRIRAREVPEVNEIWICDAGRFGHEWADQNRLKTPLVRK-EGRLVEATWEEAF 326
Query: 981 IAVAQKLQTS---EVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRA 1037
+A+ + L+ + EV + A E + +L L + L + T A
Sbjct: 327 LALKEGLKEARGEEVGLYLAHDATLEEGLLASELAKALKTPHLDFQ-------GRTAAPA 379
Query: 1038 NYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARI-----------RKGYLTNELDV--- 1083
+ + +AD L++G +P EAP+ + R+ R + T D+
Sbjct: 380 SLFPPASLEDLLQADFALVLG-DPTEEAPILHLRLSEFVRDLKPPHRYNHGTPFADLQIK 438
Query: 1084 --------------AYIGP--KVDLRYDYEHLGESADLIKQLAS---GSHPFSKKLSA-- 1122
Y P K ++ GE +++ L GS +K A
Sbjct: 439 ERMPRRTDKMALFAPYRAPLMKWAAIHEVHRPGEEREILLALLGDKEGSEMVAKAKEAWE 498
Query: 1123 -AKKPLIVVGADISDGXXXXXXXXXXXXKVTCESDVPCDWKVLNILQKAASQVAALDIGY 1181
AK P++++GA + + KVL + AA+ +G
Sbjct: 499 KAKNPVLILGAGVLQDTVAAERARLLAERKGA--------KVLA-MTPAANARGLEAMGV 549
Query: 1182 KPGTSAIREKPPKVLFLLGADEGSISRDDV--GKDCFIIYQGHHGDHGASIADAILPGAA 1239
PG P L+ A G + ++ GK +++ H A +LP
Sbjct: 550 LPGAKGASWDEPGALY---AYYGFVPPEEALKGKRFVVMHLSHLHPLAERYAHVVLPAPT 606
Query: 1240 YTEKQSTYVNTEGRAQQTLTAVTPPGLAREDWKIIRALSEGVS 1282
+ EK+ VN EGR A G A +++ L+E +
Sbjct: 607 FYEKRGHLVNLEGRVLPLSPAPIENGEAEGALQVLALLAEALG 649
>pdb|2NYA|A Chain A, Crystal Structure Of The Periplasmic Nitrate Reductase (Nap)
From Escherichia Coli
pdb|2NYA|F Chain F, Crystal Structure Of The Periplasmic Nitrate Reductase (Nap)
From Escherichia Coli
Length = 792
Score = 38.5 bits (88), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 1216 FIIYQGHHGDHGASIADAILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPGLARED-WKII 1274
FII + A AD ILP A + EK+ Y N E R Q V PG A+ D W+++
Sbjct: 468 FIIVSDPYPTVSALAADLILPTAMWVEKEGAYGNAERRTQFWRQQVQAPGEAKSDLWQLV 527
Query: 1275 R 1275
+
Sbjct: 528 Q 528
>pdb|3ML1|A Chain A, Crystal Structure Of The Periplasmic Nitrate Reductase From
Cupriavidus Necator
Length = 802
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 1216 FIIYQGHHGDHGASIADAILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPGLARED-WKII 1274
FI+ + A AD +LP A + EK+ Y N E R Q V PG AR D W+++
Sbjct: 478 FIVVSDAYPTVTALAADLVLPSAMWVEKEGAYGNAERRTQFWHQLVDAPGEARSDLWQLV 537
>pdb|3O5A|A Chain A, Crystal Structure Of Partially Reduced Periplasmic Nitrate
Reductase From Cupriavidus Necator Using Ionic Liquids
Length = 802
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 1216 FIIYQGHHGDHGASIADAILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPGLARED-WKII 1274
FI+ + A AD +LP A + EK+ Y N E R Q V PG AR D W+++
Sbjct: 478 FIVVSDAYPTVTALAADLVLPSAMWVEKEGAYGNAERRTQFWHQLVDAPGEARSDLWQLV 537
>pdb|1OGY|A Chain A, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|C Chain C, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|E Chain E, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|G Chain G, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|I Chain I, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|K Chain K, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|M Chain M, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|O Chain O, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
Length = 802
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 1231 ADAILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPGLARED-WKII 1274
AD +LP A + EK+ Y N E R V PG AR D W+++
Sbjct: 493 ADLVLPAAMWVEKEGAYGNAERRTHFWHQLVEAPGEARSDLWQLM 537
>pdb|2IVF|A Chain A, Ethylbenzene Dehydrogenase From Aromatoleum Aromaticum
Length = 976
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 1228 ASIADAILPGAAYTEKQSTYVNTEGRAQQTLT--AVTPPGLAREDWKII 1274
A AD +LP A Y EK G T +V PPG RE+W I
Sbjct: 643 AMYADIVLPCAWYYEKHEMTTPCSGNPFFTFVDRSVAPPGECREEWDAI 691
>pdb|2IV2|X Chain X, Reinterpretation Of Reduced Form Of Formate Dehydrogenase H
From E. Coli
pdb|1AA6|A Chain A, Reduced Form Of Formate Dehydrogenase H From E. Coli
pdb|1FDI|A Chain A, Oxidized Form Of Formate Dehydrogenase H From E. Coli
Complexed With The Inhibitor Nitrite
pdb|1FDO|A Chain A, Oxidized Form Of Formate Dehydrogenase H From E. Coli
Length = 715
Score = 33.5 bits (75), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 1228 ASIADAILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPGLAREDWKIIRALS 1278
AS AD ILP ++ E + + + Q+ AV P + DW+II ++
Sbjct: 436 ASAADVILPSTSWGEHEGVFTAADRGFQRFFKAVEPKWDLKTDWQIISEIA 486
>pdb|2JIO|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
pdb|2JIQ|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
pdb|2V3V|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
Length = 723
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 1231 ADAILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPGLAREDWKIIRALSEGVSSNLSSEPV 1290
AD +LP A + E+ Y E R T AV PPG R + L E + +P
Sbjct: 455 ADLVLPPAFWCERDGVYGCGERRYSLTEKAVDPPGQCR---PTVNTLVE-FARRAGVDPQ 510
Query: 1291 DVKQKNLEDYY 1301
V +N ED +
Sbjct: 511 LVNFRNAEDVW 521
>pdb|2NAP|A Chain A, Dissimilatory Nitrate Reductase (Nap) From Desulfovibrio
Desulfuricans
pdb|2JIM|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
pdb|2JIP|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
pdb|2JIR|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
pdb|2V45|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
Length = 723
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 1231 ADAILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPGLAREDWKIIRALSEGVSSNLSSEPV 1290
AD +LP A + E+ Y E R T AV PPG R + L E + +P
Sbjct: 455 ADLVLPPAFWCERDGVYGCGERRYSLTEKAVDPPGQCR---PTVNTLVE-FARRAGVDPQ 510
Query: 1291 DVKQKNLEDYY 1301
V +N ED +
Sbjct: 511 LVNFRNAEDVW 521
>pdb|4AAY|A Chain A, Crystal Structure Of The Arsenite Oxidase Protein Complex
From Rhizobium Species Strain Nt-26
pdb|4AAY|C Chain C, Crystal Structure Of The Arsenite Oxidase Protein Complex
From Rhizobium Species Strain Nt-26
pdb|4AAY|E Chain E, Crystal Structure Of The Arsenite Oxidase Protein Complex
From Rhizobium Species Strain Nt-26
pdb|4AAY|G Chain G, Crystal Structure Of The Arsenite Oxidase Protein Complex
From Rhizobium Species Strain Nt-26
Length = 845
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 51/123 (41%), Gaps = 21/123 (17%)
Query: 955 KRQRLLTPFVRNCDGQLVATEWEDALIAVAQKL-----QTSEVAGVVGSLADAEAMVALK 1009
++QRL P V GQ+ T W+DAL VA+ + E A +V + A +
Sbjct: 120 QQQRLTDPLVWRY-GQMQPTSWDDALDLVARVTAKIVKEKGEDALIVSAFDHGGAGGGYE 178
Query: 1010 DLLNKLGSEDLYTEY------------AFPLEGAGTDLRANYLLNNKIAGAEEADLILLI 1057
N G+ LY E A+ E GT LNN AE AD I+ +
Sbjct: 179 ---NTWGTGKLYFEAMKVKNIRIHNRPAYNSEVHGTRDMGVGELNNCYEDAELADTIVAV 235
Query: 1058 GTN 1060
GTN
Sbjct: 236 GTN 238
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 12/149 (8%)
Query: 369 GNPVSDLEAEVKDSAG--PMTSFLESSVT---SDIFNEPALYTKTVRSVTLKISKEKIES 423
GN V+DL A V G PM + + V + I + LY ++ T+K+ KEK E
Sbjct: 201 GNYVADLGAMVVTGLGGNPM-AVVSKQVNMELAKIKQKCPLYEANGQADTVKVPKEKDEM 259
Query: 424 LERNLQTETQRSRKLEEELQDTRQTCEEVVRKEVSIVTVTLFLERLRSSHSKRSKNADSL 483
+E+ + + L +L + K VS+ + +L+ H K + +
Sbjct: 260 VEQEFNRLLEATSYLSHQLD-----FNVLNNKPVSLGQALEVVIQLQEKHVK-DEQIEHW 313
Query: 484 VRLQKAQDEIQTLLAKSASIKTELREFYQ 512
++ K Q+E++ LL K ++K +++E +Q
Sbjct: 314 KKIVKTQEELKELLNKMVNLKEKIKELHQ 342
>pdb|2A5Y|B Chain B, Structure Of A Ced-4CED-9 Complex
pdb|2A5Y|C Chain C, Structure Of A Ced-4CED-9 Complex
pdb|3LQQ|A Chain A, Structure Of The Ced-4 Apoptosome
pdb|3LQQ|B Chain B, Structure Of The Ced-4 Apoptosome
pdb|3LQR|A Chain A, Structure Of Ced-4:ced-3 Complex
pdb|3LQR|B Chain B, Structure Of Ced-4:ced-3 Complex
Length = 549
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 205 LKEESKKRELMAKKVESVMQSQLQQAIHMITSDVTHLHTSKESLATRQPSEQSLIDSTTD 264
LK SK+ L++ K V+ ++ IHM V T ++ EQ L++ +
Sbjct: 434 LKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTIANGISIL---EQRLLE-IGN 489
Query: 265 TNCPVTQQYVPSSNQQYAPSS 285
N V ++++PS Q++ SS
Sbjct: 490 NNVSVPERHIPSHFQKFRRSS 510
>pdb|2Y4S|A Chain A, Barley Limit Dextrinase In Complex With Beta-Cyclodextrin
pdb|2Y5E|A Chain A, Barley Limit Dextrinase In Complex With Alpha-Cyclodextrin
pdb|4AIO|A Chain A, Crystal Structure Of The Starch Debranching Enzyme Barley
Limit Dextrinase
Length = 884
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 303 FSADSTHMNIVERDIPNSADDMRKYIEMQYSMFSADSTHMNI 344
F AD H+++ +P DDM Y ++FS DS +++
Sbjct: 101 FGADGKHVDVTGLQLPGVLDDMFAYTGPLGAVFSEDSVSLHL 142
>pdb|2WZ8|A Chain A, Family 35 Carbohydrate Binding Module From Clostridium
Thermocellum
Length = 156
Score = 30.4 bits (67), Expect = 6.4, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 22/106 (20%)
Query: 836 GGECDLQDQSMAFGNDLGTTGRGSDM----------QVGTY--VEKLFLSELSG------ 877
G +D + + G +G G GS+ Q GTY V + +E+ G
Sbjct: 22 GAAVRQRDNAASGGQYVGWIGNGSNNYLQFNNVYVPQAGTYRMVVQFANAEVFGQHSYNN 81
Query: 878 NVID-LCPV---GALTSKPYSFTARPWETRKTESVDVLDAVGSNII 919
NV+D C + G Y F R W T +T+ +DV G+N I
Sbjct: 82 NVVDRYCSISVNGGPEKGHYFFNTRGWNTYRTDIIDVYLNAGNNTI 127
>pdb|1YVY|A Chain A, Crystal Strucutre Of Anaerobiospirillum Succiniciproducens
Phosphoenolpyruvate Carboxykinase
pdb|1YVY|B Chain B, Crystal Strucutre Of Anaerobiospirillum Succiniciproducens
Phosphoenolpyruvate Carboxykinase
pdb|1YTM|A Chain A, Crystal Structure Of Phosphoenolpyruvate Carboxykinase Of
Anaerobiospirillum Succiniciproducens Complexed With
Atp, Oxalate, Magnesium And Manganese Ions
pdb|1YTM|B Chain B, Crystal Structure Of Phosphoenolpyruvate Carboxykinase Of
Anaerobiospirillum Succiniciproducens Complexed With
Atp, Oxalate, Magnesium And Manganese Ions
Length = 532
Score = 30.0 bits (66), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 122 KEKTIVENAAKQLKQISENEFKQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYE 181
K+K IV+N A + + +EFK K + E A QLK ++ K + K + C
Sbjct: 63 KDKFIVKNEASKEIWWTSDEFKNDNKPVTEEAWAQLKALAGKELSNKPLYVVDLFCGA-- 120
Query: 182 AENKKLK 188
EN +LK
Sbjct: 121 NENTRLK 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,276,994
Number of Sequences: 62578
Number of extensions: 1407060
Number of successful extensions: 3585
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 3490
Number of HSP's gapped (non-prelim): 144
length of query: 1334
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1224
effective length of database: 8,089,757
effective search space: 9901862568
effective search space used: 9901862568
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)