Query psy11935
Match_columns 1334
No_of_seqs 567 out of 2928
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 22:45:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11935.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11935hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2282|consensus 100.0 7E-128 1E-132 1064.1 33.7 594 662-1322 30-707 (708)
2 PRK09130 NADH dehydrogenase su 100.0 4E-123 9E-128 1163.6 53.5 591 664-1323 1-681 (687)
3 COG3383 Uncharacterized anaero 100.0 9E-112 2E-116 977.0 36.6 556 662-1282 3-744 (978)
4 PRK07860 NADH dehydrogenase su 100.0 2E-103 4E-108 1007.4 48.5 549 662-1282 2-646 (797)
5 TIGR01973 NuoG NADH-quinone ox 100.0 3E-103 6E-108 985.8 46.7 547 667-1277 1-603 (603)
6 PRK09129 NADH dehydrogenase su 100.0 3E-101 7E-106 994.6 50.0 548 664-1282 1-634 (776)
7 PRK08166 NADH dehydrogenase su 100.0 3.9E-98 8E-103 971.7 44.0 549 664-1282 1-660 (847)
8 COG1034 NuoG NADH dehydrogenas 100.0 1.2E-95 3E-100 884.0 27.9 592 664-1324 1-685 (693)
9 PRK08493 NADH dehydrogenase su 100.0 1.6E-75 3.5E-80 730.1 37.6 499 664-1282 1-651 (819)
10 cd02774 MopB_Res-Cmplx1_Nad11- 100.0 1.5E-62 3.4E-67 572.8 32.7 356 906-1279 1-364 (366)
11 cd02773 MopB_Res-Cmplx1_Nad11 100.0 5.8E-62 1.3E-66 580.8 35.4 368 906-1281 1-375 (375)
12 cd02752 MopB_Formate-Dh-Na-lik 100.0 7.4E-58 1.6E-62 565.8 32.8 363 906-1282 1-441 (649)
13 cd02768 MopB_NADH-Q-OR-NuoG2 M 100.0 6.5E-57 1.4E-61 541.3 32.4 365 906-1281 1-386 (386)
14 TIGR01553 formate-DH-alph form 100.0 5.7E-57 1.2E-61 581.7 33.8 374 902-1282 42-656 (1009)
15 cd02754 MopB_Nitrate-R-NapA-li 100.0 1.9E-56 4.2E-61 562.2 36.4 371 906-1282 1-486 (565)
16 cd02772 MopB_NDH-1_NuoG2 MopB_ 100.0 7.2E-56 1.6E-60 536.5 34.1 364 906-1281 1-414 (414)
17 cd02766 MopB_3 The MopB_3 CD i 100.0 1.2E-55 2.6E-60 543.4 32.8 347 906-1282 1-426 (501)
18 cd02753 MopB_Formate-Dh-H Form 100.0 2.2E-55 4.7E-60 546.5 33.7 367 906-1283 1-441 (512)
19 cd02771 MopB_NDH-1_NuoG2-N7 Mo 100.0 2.5E-55 5.4E-60 540.5 31.9 370 906-1284 1-436 (472)
20 TIGR03479 DMSO_red_II_alp DMSO 100.0 4.7E-55 1E-59 570.1 35.9 400 879-1282 26-643 (912)
21 cd02759 MopB_Acetylene-hydrata 100.0 6.2E-55 1.3E-59 536.0 33.1 348 906-1283 1-428 (477)
22 TIGR01591 Fdh-alpha formate de 100.0 1.3E-54 2.8E-59 557.0 35.2 368 907-1282 1-479 (671)
23 cd02755 MopB_Thiosulfate-R-lik 100.0 1.4E-54 3.1E-59 529.0 33.0 350 905-1283 1-430 (454)
24 cd02762 MopB_1 The MopB_1 CD i 100.0 1E-54 2.2E-59 541.6 31.7 374 906-1282 1-477 (539)
25 TIGR01706 NAPA periplasmic nit 100.0 3.5E-54 7.6E-59 558.5 35.0 381 902-1282 40-572 (830)
26 cd02750 MopB_Nitrate-R-NarG-li 100.0 4.4E-54 9.6E-59 525.2 33.2 348 904-1282 4-432 (461)
27 PRK13532 nitrate reductase cat 100.0 5E-54 1.1E-58 558.6 35.3 382 901-1282 39-572 (830)
28 cd02764 MopB_PHLH The MopB_PHL 100.0 5.3E-54 1.2E-58 532.8 30.2 389 883-1282 22-480 (524)
29 cd02763 MopB_2 The MopB_2 CD i 100.0 1.8E-53 3.9E-58 529.2 31.8 373 906-1282 1-534 (679)
30 PRK15488 thiosulfate reductase 100.0 2.1E-52 4.5E-57 541.1 33.3 377 902-1282 41-528 (759)
31 cd02757 MopB_Arsenate-R This C 100.0 1.4E-51 3E-56 508.9 32.6 351 904-1283 1-458 (523)
32 cd00368 Molybdopterin-Binding 100.0 5.2E-51 1.1E-55 488.8 33.1 336 906-1281 1-374 (374)
33 cd02758 MopB_Tetrathionate-Ra 100.0 1.5E-50 3.2E-55 511.9 34.5 379 906-1286 1-604 (735)
34 cd02765 MopB_4 The MopB_4 CD i 100.0 8.6E-51 1.9E-55 507.2 30.5 341 906-1282 1-484 (567)
35 cd02770 MopB_DmsA-EC This CD ( 100.0 1.2E-50 2.5E-55 512.0 30.2 374 907-1282 2-513 (617)
36 cd02756 MopB_Arsenite-Ox Arsen 100.0 3.9E-50 8.4E-55 498.3 31.9 352 922-1282 72-565 (676)
37 cd02751 MopB_DMSOR-like The Mo 100.0 5E-50 1.1E-54 506.1 29.3 358 914-1283 5-506 (609)
38 cd02760 MopB_Phenylacetyl-CoA- 100.0 8.2E-49 1.8E-53 496.9 33.7 376 906-1282 1-619 (760)
39 TIGR02166 dmsA_ynfE anaerobic 100.0 6.2E-49 1.4E-53 512.4 31.7 380 902-1282 42-561 (797)
40 PRK14990 anaerobic dimethyl su 100.0 7.4E-49 1.6E-53 511.2 31.4 380 902-1282 56-578 (814)
41 COG1196 Smc Chromosome segrega 100.0 2.7E-44 5.8E-49 480.4 73.4 555 53-622 307-897 (1163)
42 TIGR03129 one_C_dehyd_B formyl 100.0 1.2E-47 2.5E-52 467.1 31.2 356 907-1281 2-421 (421)
43 COG0243 BisC Anaerobic dehydro 100.0 9.9E-48 2.2E-52 497.4 26.4 371 905-1282 41-530 (765)
44 cd02761 MopB_FmdB-FwdB The Mop 100.0 1.4E-46 3E-51 456.5 29.8 350 907-1281 2-415 (415)
45 TIGR02693 arsenite_ox_L arseni 100.0 2E-46 4.4E-51 480.3 31.5 351 923-1282 72-574 (806)
46 cd02769 MopB_DMSOR-BSOR-TMAOR 100.0 3.6E-46 7.7E-51 469.5 27.7 363 912-1282 3-505 (609)
47 TIGR02169 SMC_prok_A chromosom 100.0 2.8E-41 6E-46 462.9 75.3 234 244-487 512-760 (1164)
48 PRK14991 tetrathionate reducta 100.0 7.8E-45 1.7E-49 472.9 32.8 380 903-1282 73-739 (1031)
49 PRK09939 putative oxidoreducta 100.0 1.7E-44 3.6E-49 454.1 29.5 328 947-1282 96-563 (759)
50 TIGR02164 torA trimethylamine- 100.0 9.7E-44 2.1E-48 462.0 29.6 366 907-1282 42-563 (822)
51 TIGR00509 bisC_fam molybdopter 100.0 8.4E-44 1.8E-48 460.6 28.7 358 915-1282 4-512 (770)
52 TIGR01580 narG respiratory nit 100.0 4.5E-43 9.8E-48 441.4 34.0 203 903-1108 43-308 (1235)
53 cd02767 MopB_ydeP The MopB_yde 100.0 2.7E-43 5.8E-48 434.4 30.6 327 949-1282 54-530 (574)
54 TIGR01701 Fdhalpha-like oxidor 100.0 3.3E-43 7.1E-48 447.8 31.1 333 944-1283 84-550 (743)
55 PF00384 Molybdopterin: Molybd 100.0 5.7E-43 1.2E-47 427.6 25.3 323 958-1280 1-432 (432)
56 PRK15102 trimethylamine N-oxid 100.0 8.4E-42 1.8E-46 444.0 29.0 360 916-1282 51-566 (825)
57 KOG0996|consensus 100.0 1.2E-36 2.6E-41 368.3 68.2 398 42-449 389-822 (1293)
58 PTZ00305 NADH:ubiquinone oxido 100.0 5.4E-40 1.2E-44 354.4 12.8 173 662-895 66-277 (297)
59 COG1029 FwdB Formylmethanofura 100.0 2E-35 4.4E-40 318.8 26.0 353 904-1281 3-425 (429)
60 KOG0964|consensus 100.0 1.9E-30 4.1E-35 308.0 64.9 381 53-449 312-715 (1200)
61 TIGR02168 SMC_prok_B chromosom 100.0 2.9E-29 6.2E-34 345.2 74.3 544 8-570 252-850 (1179)
62 KOG0018|consensus 100.0 5.2E-29 1.1E-33 301.0 62.8 367 244-631 490-898 (1141)
63 KOG0933|consensus 100.0 5.2E-28 1.1E-32 289.1 63.6 370 256-648 518-911 (1174)
64 PRK07569 bidirectional hydroge 100.0 2.8E-30 6.1E-35 285.0 12.3 172 662-893 1-212 (234)
65 TIGR02168 SMC_prok_B chromosom 100.0 5.4E-23 1.2E-27 283.2 70.4 418 162-604 401-875 (1179)
66 COG5013 NarG Nitrate reductase 99.9 5E-26 1.1E-30 268.1 23.9 204 902-1108 44-310 (1227)
67 PTZ00305 NADH:ubiquinone oxido 99.9 4.2E-22 9E-27 216.1 10.8 138 765-907 88-247 (297)
68 COG1034 NuoG NADH dehydrogenas 99.8 1E-21 2.2E-26 240.1 8.6 158 765-922 20-202 (693)
69 TIGR01973 NuoG NADH-quinone ox 99.8 3.5E-20 7.7E-25 233.8 15.8 133 765-902 17-172 (603)
70 COG3383 Uncharacterized anaero 99.8 1.1E-19 2.3E-24 213.3 15.0 149 765-914 24-199 (978)
71 TIGR02169 SMC_prok_A chromosom 99.8 6.7E-14 1.4E-18 192.8 72.1 99 409-509 673-776 (1164)
72 PRK09130 NADH dehydrogenase su 99.8 7.6E-20 1.6E-24 231.1 9.1 153 765-922 20-203 (687)
73 KOG0250|consensus 99.8 3.8E-13 8.2E-18 166.5 64.7 269 171-450 390-706 (1074)
74 PRK04863 mukB cell division pr 99.7 7.8E-13 1.7E-17 176.6 59.1 365 244-633 671-1125(1486)
75 COG1196 Smc Chromosome segrega 99.7 3.9E-11 8.5E-16 162.2 72.4 290 323-622 513-890 (1163)
76 PRK07860 NADH dehydrogenase su 99.7 1.1E-17 2.5E-22 216.0 8.9 133 765-902 23-180 (797)
77 PRK08493 NADH dehydrogenase su 99.7 1.5E-17 3.3E-22 209.8 9.3 122 765-888 20-162 (819)
78 KOG0964|consensus 99.7 6.6E-11 1.4E-15 143.1 63.6 188 324-516 521-773 (1200)
79 PRK09129 NADH dehydrogenase su 99.7 2E-17 4.4E-22 215.0 9.5 153 765-922 20-202 (776)
80 PRK07569 bidirectional hydroge 99.7 6.7E-17 1.4E-21 178.8 8.2 121 765-885 22-160 (234)
81 KOG2282|consensus 99.7 4.4E-17 9.4E-22 183.4 4.2 120 764-883 50-187 (708)
82 KOG0996|consensus 99.6 8E-10 1.7E-14 137.0 66.1 57 323-379 614-678 (1293)
83 PF06470 SMC_hinge: SMC protei 99.6 8.1E-16 1.8E-20 152.9 6.0 107 257-363 2-120 (120)
84 PRK08166 NADH dehydrogenase su 99.6 1.4E-15 3E-20 199.3 8.9 125 765-889 20-171 (847)
85 PRK02224 chromosome segregatio 99.6 5.5E-09 1.2E-13 139.4 67.4 162 402-570 508-679 (880)
86 KOG0979|consensus 99.5 9.6E-09 2.1E-13 126.3 55.7 116 1-118 180-309 (1072)
87 PF10588 NADH-G_4Fe-4S_3: NADH 99.4 3.4E-14 7.3E-19 109.9 2.2 41 710-750 1-41 (41)
88 KOG0161|consensus 99.4 3.8E-08 8.2E-13 132.2 59.0 103 11-115 917-1022(1930)
89 PRK03918 chromosome segregatio 99.4 3.3E-07 7.2E-12 122.6 68.6 21 430-450 529-549 (880)
90 KOG0161|consensus 99.4 1.4E-07 3E-12 127.0 63.5 97 142-241 1045-1141(1930)
91 PRK02224 chromosome segregatio 99.4 2.3E-07 5E-12 123.9 66.2 30 54-83 205-234 (880)
92 KOG0933|consensus 99.4 2.7E-07 5.8E-12 113.3 55.6 192 371-570 653-862 (1174)
93 KOG0250|consensus 99.3 1.1E-06 2.4E-11 110.2 59.9 288 4-297 209-518 (1074)
94 PF12128 DUF3584: Protein of u 99.3 4.2E-06 9E-11 114.0 69.1 57 195-252 482-538 (1201)
95 PRK12814 putative NADPH-depend 99.3 1.7E-12 3.7E-17 165.3 5.5 100 663-831 2-101 (652)
96 PF12128 DUF3584: Protein of u 99.2 1.4E-05 3.1E-10 108.9 69.0 36 1050-1085 1144-1180(1201)
97 PRK04863 mukB cell division pr 99.2 2.4E-06 5.3E-11 115.4 60.5 45 322-368 680-730 (1486)
98 TIGR00606 rad50 rad50. This fa 99.2 1.7E-06 3.6E-11 119.2 59.2 44 405-450 824-867 (1311)
99 PF04879 Molybdop_Fe4S4: Molyb 99.2 8.3E-12 1.8E-16 105.0 4.6 54 902-955 1-54 (55)
100 KOG4674|consensus 99.2 3.5E-06 7.6E-11 111.7 56.6 98 120-222 954-1051(1822)
101 TIGR00606 rad50 rad50. This fa 99.2 2.8E-06 6.1E-11 117.0 58.1 31 333-363 640-672 (1311)
102 KOG4674|consensus 99.1 7.7E-05 1.7E-09 99.5 63.7 206 415-622 650-885 (1822)
103 KOG0018|consensus 99.1 1.7E-05 3.8E-10 98.9 52.9 219 278-516 448-750 (1141)
104 PRK01156 chromosome segregatio 99.1 0.0003 6.5E-09 94.3 67.5 36 426-461 522-557 (895)
105 PF13510 Fer2_4: 2Fe-2S iron-s 99.0 1.3E-10 2.8E-15 106.0 2.4 81 663-809 2-82 (82)
106 TIGR02680 conserved hypothetic 99.0 0.00071 1.5E-08 93.1 65.8 49 4-52 278-326 (1353)
107 PRK08764 ferredoxin; Provision 98.7 1.2E-08 2.7E-13 102.7 4.0 34 718-751 35-68 (135)
108 PF00261 Tropomyosin: Tropomyo 98.6 3.9E-05 8.5E-10 85.4 30.1 220 4-232 3-232 (237)
109 PF10174 Cast: RIM-binding pro 98.6 0.006 1.3E-07 77.7 52.5 19 100-118 239-257 (775)
110 PF09326 DUF1982: Domain of un 98.6 1.9E-08 4.1E-13 81.0 1.4 30 1284-1316 20-49 (49)
111 PRK05113 electron transport co 98.5 4E-08 8.6E-13 104.8 2.7 109 720-901 66-174 (191)
112 PF00261 Tropomyosin: Tropomyo 98.5 0.00014 3E-09 81.1 29.1 223 17-248 2-227 (237)
113 PF10174 Cast: RIM-binding pro 98.4 0.024 5.2E-07 72.4 59.5 58 459-516 352-410 (775)
114 PRK11637 AmiB activator; Provi 98.3 0.00043 9.2E-09 84.5 30.2 14 372-385 381-394 (428)
115 KOG0979|consensus 98.3 0.042 9.1E-07 69.5 54.2 57 4-60 176-234 (1072)
116 PRK06991 ferredoxin; Provision 98.2 4.4E-07 9.6E-12 101.4 2.4 110 718-900 35-144 (270)
117 PF07888 CALCOCO1: Calcium bin 98.2 0.0033 7.2E-08 75.9 34.1 42 9-50 150-191 (546)
118 PRK11637 AmiB activator; Provi 98.2 0.00065 1.4E-08 82.9 29.0 6 376-381 391-396 (428)
119 KOG0994|consensus 98.2 0.057 1.2E-06 68.3 50.8 79 34-114 1198-1282(1758)
120 PF07888 CALCOCO1: Calcium bin 98.2 0.004 8.6E-08 75.2 34.0 88 7-95 141-231 (546)
121 PF01576 Myosin_tail_1: Myosin 98.2 3.7E-07 8E-12 118.9 0.0 85 534-622 608-692 (859)
122 KOG1029|consensus 98.2 0.0014 3.1E-08 79.0 29.2 10 692-701 901-910 (1118)
123 KOG4643|consensus 98.1 0.066 1.4E-06 67.4 48.3 48 521-570 509-556 (1195)
124 TIGR01944 rnfB electron transp 98.1 1.4E-06 3E-11 91.2 2.8 32 719-751 63-94 (165)
125 PF10588 NADH-G_4Fe-4S_3: NADH 98.1 1.6E-06 3.5E-11 67.4 1.9 29 815-843 1-29 (41)
126 COG1340 Uncharacterized archae 98.0 0.016 3.5E-07 64.6 32.8 76 13-88 10-88 (294)
127 PHA02562 46 endonuclease subun 98.0 0.0016 3.6E-08 82.7 29.3 11 380-390 135-145 (562)
128 PHA02562 46 endonuclease subun 98.0 0.0015 3.2E-08 83.1 28.9 56 174-230 336-391 (562)
129 PF01576 Myosin_tail_1: Myosin 98.0 1E-06 2.2E-11 114.9 0.0 48 5-52 7-54 (859)
130 PF09726 Macoilin: Transmembra 98.0 0.0024 5.3E-08 81.0 29.6 74 176-250 588-661 (697)
131 KOG0976|consensus 98.0 0.09 2E-06 64.3 55.4 57 174-231 248-304 (1265)
132 COG0419 SbcC ATPase involved i 98.0 0.19 4E-06 67.6 69.1 11 671-681 799-809 (908)
133 COG4942 Membrane-bound metallo 98.0 0.019 4.1E-07 67.2 33.7 29 665-701 317-345 (420)
134 COG4372 Uncharacterized protei 98.0 0.019 4.2E-07 64.6 31.7 215 404-632 75-295 (499)
135 PF09730 BicD: Microtubule-ass 97.9 0.15 3.2E-06 64.4 46.8 58 376-443 244-303 (717)
136 COG4372 Uncharacterized protei 97.9 0.036 7.9E-07 62.5 32.1 49 174-222 230-278 (499)
137 TIGR02680 conserved hypothetic 97.9 0.36 7.9E-06 67.1 69.3 127 384-513 717-866 (1353)
138 COG1340 Uncharacterized archae 97.9 0.04 8.6E-07 61.5 31.9 89 521-613 158-246 (294)
139 KOG0971|consensus 97.8 0.011 2.5E-07 72.8 29.3 193 424-625 330-547 (1243)
140 PF05911 DUF869: Plant protein 97.8 0.25 5.4E-06 63.3 60.5 45 203-248 265-309 (769)
141 KOG4643|consensus 97.8 0.23 5E-06 62.8 54.8 126 121-249 209-342 (1195)
142 PF15070 GOLGA2L5: Putative go 97.8 0.033 7.1E-07 69.9 33.6 72 8-79 21-104 (617)
143 COG4942 Membrane-bound metallo 97.8 0.027 5.8E-07 66.0 30.3 67 10-76 39-108 (420)
144 PRK12814 putative NADPH-depend 97.8 1.1E-05 2.4E-10 103.3 3.0 68 725-853 569-638 (652)
145 KOG1029|consensus 97.7 0.022 4.8E-07 69.2 29.3 12 1049-1060 926-937 (1118)
146 KOG0994|consensus 97.7 0.058 1.3E-06 68.3 33.4 65 176-241 1226-1290(1758)
147 PF05483 SCP-1: Synaptonemal c 97.7 0.25 5.4E-06 60.2 61.2 87 451-537 581-677 (786)
148 COG0419 SbcC ATPase involved i 97.7 0.51 1.1E-05 63.5 61.6 9 665-673 801-809 (908)
149 PRK04778 septation ring format 97.7 0.34 7.3E-06 61.4 49.2 125 53-197 103-227 (569)
150 PF00038 Filament: Intermediat 97.7 0.072 1.6E-06 62.3 32.2 44 579-622 260-303 (312)
151 PF05483 SCP-1: Synaptonemal c 97.6 0.31 6.7E-06 59.4 57.6 36 53-88 167-202 (786)
152 KOG0962|consensus 97.6 0.55 1.2E-05 62.2 50.7 38 4-41 409-446 (1294)
153 PF13514 AAA_27: AAA domain 97.6 0.74 1.6E-05 63.4 55.0 22 606-628 937-958 (1111)
154 PF05667 DUF812: Protein of un 97.6 0.016 3.4E-07 72.3 26.5 108 19-132 324-434 (594)
155 PF09726 Macoilin: Transmembra 97.6 0.031 6.7E-07 71.2 29.0 22 170-191 589-610 (697)
156 KOG0977|consensus 97.6 0.036 7.8E-07 67.2 27.8 64 383-450 17-80 (546)
157 PF05701 WEMBL: Weak chloropla 97.5 0.16 3.4E-06 63.5 34.4 77 168-245 281-357 (522)
158 KOG1003|consensus 97.5 0.096 2.1E-06 54.3 26.3 192 16-230 4-198 (205)
159 KOG0978|consensus 97.5 0.54 1.2E-05 58.9 54.7 91 528-622 524-614 (698)
160 KOG0946|consensus 97.5 0.019 4.2E-07 70.4 24.4 67 553-621 815-881 (970)
161 TIGR03185 DNA_S_dndD DNA sulfu 97.5 0.13 2.9E-06 66.3 33.9 70 9-78 209-285 (650)
162 KOG0977|consensus 97.5 0.034 7.4E-07 67.4 26.0 27 362-390 478-504 (546)
163 TIGR00384 dhsB succinate dehyd 97.5 8.8E-05 1.9E-09 81.7 3.9 19 869-887 192-210 (220)
164 KOG0995|consensus 97.5 0.2 4.2E-06 60.4 31.5 44 519-564 430-473 (581)
165 PRK04778 septation ring format 97.4 0.048 1E-06 69.0 28.2 122 101-222 378-502 (569)
166 COG1143 NuoI Formate hydrogenl 97.4 5.2E-05 1.1E-09 78.7 1.5 24 869-892 93-116 (172)
167 COG4477 EzrA Negative regulato 97.4 0.23 5E-06 59.2 31.0 184 171-384 350-553 (570)
168 PF05667 DUF812: Protein of un 97.4 0.18 3.8E-06 63.2 32.0 39 9-47 328-366 (594)
169 PF15070 GOLGA2L5: Putative go 97.4 0.13 2.9E-06 64.6 30.7 33 401-435 13-45 (617)
170 KOG0980|consensus 97.4 0.3 6.6E-06 61.1 32.4 12 300-311 615-626 (980)
171 PF13187 Fer4_9: 4Fe-4S diclus 97.3 6E-05 1.3E-09 63.4 0.3 48 837-888 6-55 (55)
172 PRK10246 exonuclease subunit S 97.3 1.6 3.5E-05 59.5 64.8 16 245-263 497-512 (1047)
173 PF05557 MAD: Mitotic checkpoi 97.3 0.0014 3.1E-08 85.2 13.0 16 278-293 311-326 (722)
174 PF09730 BicD: Microtubule-ass 97.3 1 2.2E-05 57.2 53.1 112 6-118 31-147 (717)
175 COG1579 Zn-ribbon protein, pos 97.3 0.027 5.9E-07 61.5 20.1 21 165-185 153-173 (239)
176 KOG0995|consensus 97.3 0.55 1.2E-05 56.7 32.1 15 62-76 301-315 (581)
177 TIGR03185 DNA_S_dndD DNA sulfu 97.3 0.17 3.6E-06 65.4 30.9 17 67-83 267-283 (650)
178 KOG0612|consensus 97.2 0.34 7.4E-06 62.9 31.8 18 287-304 699-716 (1317)
179 COG1579 Zn-ribbon protein, pos 97.2 0.051 1.1E-06 59.4 21.5 12 719-730 218-229 (239)
180 COG3883 Uncharacterized protei 97.2 0.15 3.2E-06 56.4 25.0 60 18-77 33-95 (265)
181 PF14662 CCDC155: Coiled-coil 97.2 0.34 7.3E-06 50.7 26.0 46 7-52 6-51 (193)
182 PF14662 CCDC155: Coiled-coil 97.2 0.3 6.4E-06 51.1 25.6 71 415-485 18-88 (193)
183 KOG1003|consensus 97.2 0.38 8.2E-06 50.1 27.1 26 56-81 12-37 (205)
184 PF06008 Laminin_I: Laminin Do 97.2 0.67 1.5E-05 52.8 31.5 42 11-52 26-67 (264)
185 KOG0976|consensus 97.2 1.1 2.5E-05 55.2 58.5 60 54-115 91-150 (1265)
186 KOG0962|consensus 97.2 1.9 4.1E-05 57.4 50.0 20 256-275 626-645 (1294)
187 KOG0963|consensus 97.1 0.62 1.3E-05 56.8 31.2 35 415-449 488-522 (629)
188 KOG0946|consensus 97.1 0.045 9.7E-07 67.4 21.9 29 422-450 667-695 (970)
189 PF07111 HCR: Alpha helical co 97.1 1.3 2.7E-05 54.9 45.1 29 353-381 421-454 (739)
190 PF12798 Fer4_3: 4Fe-4S bindin 97.1 0.00011 2.4E-09 43.8 -0.2 15 873-887 1-15 (15)
191 KOG0980|consensus 97.0 0.41 8.9E-06 60.0 29.1 13 373-385 662-674 (980)
192 KOG0963|consensus 97.0 0.84 1.8E-05 55.6 31.0 30 420-449 500-529 (629)
193 PRK08764 ferredoxin; Provision 97.0 0.00037 8.1E-09 70.4 2.8 68 823-890 35-104 (135)
194 KOG3256|consensus 97.0 0.00023 5.1E-09 70.2 0.8 57 828-892 114-171 (212)
195 COG5185 HEC1 Protein involved 97.0 1.2 2.6E-05 52.1 39.5 27 424-450 485-511 (622)
196 PF04849 HAP1_N: HAP1 N-termin 97.0 0.29 6.3E-06 55.3 24.8 98 139-239 207-304 (306)
197 KOG0612|consensus 96.9 0.49 1.1E-05 61.5 29.5 34 122-155 607-640 (1317)
198 PF08317 Spc7: Spc7 kinetochor 96.9 0.36 7.7E-06 56.7 26.9 74 168-241 216-292 (325)
199 PRK11281 hypothetical protein; 96.9 0.22 4.9E-06 66.6 27.7 13 1230-1242 969-981 (1113)
200 PF14697 Fer4_21: 4Fe-4S diclu 96.9 0.00043 9.2E-09 59.0 1.7 46 837-889 12-58 (59)
201 COG3883 Uncharacterized protei 96.9 0.75 1.6E-05 51.1 26.9 60 18-77 40-102 (265)
202 PF09728 Taxilin: Myosin-like 96.9 1.4 3E-05 51.2 32.1 66 561-629 205-270 (309)
203 KOG4673|consensus 96.9 1.9 4.1E-05 52.7 52.2 11 67-77 407-417 (961)
204 PF04849 HAP1_N: HAP1 N-termin 96.8 0.85 1.8E-05 51.7 27.1 98 521-622 206-303 (306)
205 PRK11281 hypothetical protein; 96.8 0.7 1.5E-05 62.0 31.0 33 19-51 76-108 (1113)
206 PF12718 Tropomyosin_1: Tropom 96.8 0.17 3.6E-06 51.6 19.4 49 174-222 86-134 (143)
207 PF12838 Fer4_7: 4Fe-4S diclus 96.8 0.0003 6.5E-09 58.4 -0.4 47 837-887 6-52 (52)
208 PF15066 CAGE1: Cancer-associa 96.7 0.8 1.7E-05 53.6 26.5 39 14-52 315-353 (527)
209 PF12718 Tropomyosin_1: Tropom 96.7 0.26 5.6E-06 50.2 19.8 46 7-52 5-50 (143)
210 TIGR00403 ndhI NADH-plastoquin 96.6 0.00082 1.8E-08 71.5 1.9 21 871-891 102-122 (183)
211 PF09755 DUF2046: Uncharacteri 96.6 1.7 3.8E-05 49.1 30.6 40 406-447 23-62 (310)
212 PRK09039 hypothetical protein; 96.6 0.28 6.1E-06 57.7 22.8 16 97-112 79-94 (343)
213 PRK12577 succinate dehydrogena 96.6 0.00083 1.8E-08 78.5 1.2 36 765-801 32-79 (329)
214 PRK10929 putative mechanosensi 96.5 0.91 2E-05 60.8 28.8 32 1217-1250 951-984 (1109)
215 PRK12576 succinate dehydrogena 96.5 0.0028 6.1E-08 72.1 5.1 18 669-686 24-41 (279)
216 PF08317 Spc7: Spc7 kinetochor 96.5 0.99 2.2E-05 53.0 26.4 54 554-609 212-265 (325)
217 KOG4593|consensus 96.5 3.6 7.9E-05 51.0 47.0 7 719-725 657-663 (716)
218 PF15619 Lebercilin: Ciliary p 96.5 1.5 3.3E-05 47.1 25.2 24 14-37 17-40 (194)
219 PF00037 Fer4: 4Fe-4S binding 96.5 0.00063 1.4E-08 46.5 -0.2 18 872-889 7-24 (24)
220 PRK09039 hypothetical protein; 96.5 0.3 6.4E-06 57.6 21.7 23 424-446 44-66 (343)
221 PF13514 AAA_27: AAA domain 96.5 7.2 0.00016 53.9 60.3 43 10-52 453-495 (1111)
222 smart00787 Spc7 Spc7 kinetocho 96.4 0.95 2.1E-05 52.4 25.1 67 175-241 218-287 (312)
223 PRK06991 ferredoxin; Provision 96.4 0.0011 2.4E-08 74.5 1.0 68 824-891 36-105 (270)
224 PF15066 CAGE1: Cancer-associa 96.4 1.9 4.2E-05 50.6 26.6 90 517-610 414-507 (527)
225 PF15619 Lebercilin: Ciliary p 96.4 1.5 3.2E-05 47.2 24.4 47 491-537 89-141 (194)
226 PF10473 CENP-F_leu_zip: Leuci 96.4 0.71 1.5E-05 46.5 20.4 107 5-113 6-115 (140)
227 KOG0971|consensus 96.4 4.7 0.0001 51.0 67.0 50 344-405 620-672 (1243)
228 TIGR02512 Fe_only_hydrog hydro 96.4 0.0015 3.2E-08 78.2 1.8 58 828-891 10-70 (374)
229 PF09755 DUF2046: Uncharacteri 96.3 2.6 5.7E-05 47.7 33.7 47 6-52 24-70 (310)
230 TIGR00634 recN DNA repair prot 96.3 1 2.2E-05 57.2 27.1 46 7-52 159-204 (563)
231 PRK05888 NADH dehydrogenase su 96.3 0.002 4.2E-08 67.7 2.3 23 870-892 96-118 (164)
232 PRK10929 putative mechanosensi 96.3 2.7 5.9E-05 56.4 31.5 12 1271-1282 1059-1070(1109)
233 PF06008 Laminin_I: Laminin Do 96.3 2.8 6.2E-05 47.7 28.8 85 4-88 26-113 (264)
234 CHL00014 ndhI NADH dehydrogena 96.3 0.002 4.2E-08 67.8 2.0 20 871-890 99-118 (167)
235 PRK06259 succinate dehydrogena 96.3 0.0044 9.5E-08 77.1 5.5 43 765-808 34-88 (486)
236 TIGR02936 fdxN_nitrog ferredox 96.3 0.0018 4E-08 60.7 1.6 21 870-890 69-89 (91)
237 PF09789 DUF2353: Uncharacteri 96.3 1.9 4.1E-05 49.5 25.6 45 6-50 6-50 (319)
238 PF12837 Fer4_6: 4Fe-4S bindin 96.2 0.00095 2E-08 45.5 -0.4 18 871-888 7-24 (24)
239 PLN00071 photosystem I subunit 96.2 0.0015 3.3E-08 59.8 0.8 24 870-893 45-68 (81)
240 PF06160 EzrA: Septation ring 96.2 5.6 0.00012 50.4 49.8 145 402-550 251-408 (560)
241 PRK06273 ferredoxin; Provision 96.2 0.002 4.3E-08 67.1 1.4 22 870-891 90-111 (165)
242 KOG1853|consensus 96.2 0.67 1.5E-05 49.7 19.8 18 518-535 137-154 (333)
243 PF15397 DUF4618: Domain of un 96.2 2.9 6.3E-05 46.5 27.9 29 594-622 192-220 (258)
244 PF05622 HOOK: HOOK protein; 96.2 0.0013 2.9E-08 85.3 0.0 24 565-590 622-645 (713)
245 TIGR03048 PS_I_psaC photosyste 96.1 0.0018 3.9E-08 59.1 0.8 23 871-893 45-67 (80)
246 PF05557 MAD: Mitotic checkpoi 96.1 0.043 9.3E-07 71.6 13.6 33 53-85 98-130 (722)
247 PRK12387 formate hydrogenlyase 96.1 0.0054 1.2E-07 65.4 4.3 22 871-892 73-94 (180)
248 TIGR03007 pepcterm_ChnLen poly 96.1 0.54 1.2E-05 58.9 22.6 25 26-50 164-188 (498)
249 TIGR01843 type_I_hlyD type I s 96.1 1.3 2.8E-05 54.1 25.5 23 261-283 280-304 (423)
250 PRK08222 hydrogenase 4 subunit 96.0 0.0047 1E-07 65.7 3.4 22 871-892 73-94 (181)
251 PF14915 CCDC144C: CCDC144C pr 96.0 3.6 7.7E-05 46.1 32.5 28 53-80 75-102 (305)
252 PF05010 TACC: Transforming ac 96.0 3 6.5E-05 45.1 26.6 37 68-106 68-104 (207)
253 KOG1937|consensus 96.0 1.5 3.3E-05 51.2 22.9 57 175-232 366-424 (521)
254 PF09787 Golgin_A5: Golgin sub 96.0 3.4 7.3E-05 51.7 28.6 23 6-28 113-135 (511)
255 KOG1937|consensus 95.9 3.7 8.1E-05 48.1 25.6 19 279-297 85-103 (521)
256 TIGR03007 pepcterm_ChnLen poly 95.9 0.62 1.3E-05 58.4 22.0 18 262-279 28-45 (498)
257 PF10481 CENP-F_N: Cenp-F N-te 95.9 0.77 1.7E-05 50.1 19.0 111 3-115 19-132 (307)
258 KOG0999|consensus 95.9 5.9 0.00013 47.4 49.8 21 325-345 477-498 (772)
259 TIGR01971 NuoI NADH-quinone ox 95.9 0.0049 1.1E-07 61.3 2.4 22 871-892 82-103 (122)
260 CHL00065 psaC photosystem I su 95.8 0.0027 5.9E-08 58.1 0.5 23 871-893 46-68 (81)
261 PRK08348 NADH-plastoquinone ox 95.8 0.0041 8.8E-08 61.6 1.5 22 871-892 73-94 (120)
262 PRK12771 putative glutamate sy 95.8 0.0031 6.8E-08 80.0 0.7 56 828-892 507-562 (564)
263 KOG0978|consensus 95.7 8.7 0.00019 48.6 50.0 97 522-622 497-600 (698)
264 PRK02651 photosystem I subunit 95.7 0.0042 9.2E-08 56.8 1.3 23 871-893 46-68 (81)
265 TIGR01944 rnfB electron transp 95.7 0.0069 1.5E-07 63.5 2.9 66 825-891 64-133 (165)
266 PRK12385 fumarate reductase ir 95.7 0.0043 9.4E-08 69.2 1.3 18 870-887 202-219 (244)
267 PRK10194 ferredoxin-type prote 95.6 0.0045 9.8E-08 64.9 1.2 44 871-918 66-118 (163)
268 TIGR01843 type_I_hlyD type I s 95.6 1.8 3.8E-05 52.9 24.1 7 263-269 290-296 (423)
269 COG4477 EzrA Negative regulato 95.6 3.8 8.3E-05 49.3 24.7 22 281-302 492-513 (570)
270 TIGR00402 napF ferredoxin-type 95.6 0.0065 1.4E-07 58.1 1.9 29 872-904 67-95 (101)
271 PF05701 WEMBL: Weak chloropla 95.5 9.9 0.00022 47.7 63.9 45 402-448 287-331 (522)
272 TIGR01005 eps_transp_fam exopo 95.5 1.4 3.1E-05 58.1 24.2 35 18-52 189-223 (754)
273 PF14915 CCDC144C: CCDC144C pr 95.5 5.8 0.00013 44.5 32.1 24 62-85 56-79 (305)
274 KOG4593|consensus 95.5 10 0.00022 47.3 48.1 15 614-629 612-626 (716)
275 KOG0999|consensus 95.4 8.4 0.00018 46.2 46.5 90 131-222 100-189 (772)
276 PRK05950 sdhB succinate dehydr 95.4 0.0045 9.8E-08 68.8 0.3 35 765-800 32-78 (232)
277 PF10168 Nup88: Nuclear pore c 95.4 1.1 2.3E-05 57.9 21.4 11 28-38 541-551 (717)
278 KOG0249|consensus 95.4 2.4 5.2E-05 52.2 22.6 38 353-390 53-93 (916)
279 PF12838 Fer4_7: 4Fe-4S diclus 95.3 0.0037 8.1E-08 51.9 -0.5 43 872-914 1-43 (52)
280 PF10267 Tmemb_cc2: Predicted 95.3 6.5 0.00014 46.8 25.6 29 201-230 53-81 (395)
281 PF15397 DUF4618: Domain of un 95.2 6.4 0.00014 43.8 29.3 35 206-241 189-223 (258)
282 smart00787 Spc7 Spc7 kinetocho 95.2 8 0.00017 44.9 27.0 94 168-262 204-297 (312)
283 TIGR00634 recN DNA repair prot 95.2 3.7 8E-05 52.2 25.6 32 419-450 168-199 (563)
284 KOG0249|consensus 95.2 3.1 6.7E-05 51.3 22.7 43 180-222 214-256 (916)
285 TIGR02176 pyruv_ox_red pyruvat 95.2 0.0075 1.6E-07 81.4 1.4 25 870-894 738-764 (1165)
286 PF09789 DUF2353: Uncharacteri 95.2 7.6 0.00016 44.7 24.9 46 521-568 133-178 (319)
287 KOG4809|consensus 95.2 10 0.00022 45.6 26.4 45 585-629 518-562 (654)
288 PRK14028 pyruvate ferredoxin o 95.2 0.0085 1.8E-07 70.0 1.6 21 871-891 289-309 (312)
289 TIGR01000 bacteriocin_acc bact 95.2 5.4 0.00012 49.4 26.2 17 170-186 245-261 (457)
290 PF05911 DUF869: Plant protein 95.1 15 0.00033 47.6 56.3 105 520-628 595-699 (769)
291 COG2221 DsrA Dissimilatory sul 95.1 0.017 3.6E-07 65.0 3.6 116 829-989 143-263 (317)
292 PRK09476 napG quinol dehydroge 95.1 0.01 2.2E-07 66.6 1.9 22 871-892 97-120 (254)
293 PF09728 Taxilin: Myosin-like 95.1 8.8 0.00019 44.6 33.3 67 169-236 210-276 (309)
294 PRK10869 recombination and rep 95.1 9.1 0.0002 48.4 28.0 26 197-222 342-367 (553)
295 PRK05113 electron transport co 95.1 0.011 2.5E-07 63.3 2.1 62 830-891 70-134 (191)
296 PF13851 GAS: Growth-arrest sp 95.0 6.5 0.00014 42.7 26.6 56 460-515 30-86 (201)
297 TIGR00397 mauM_napG MauM/NapG 95.0 0.012 2.7E-07 64.2 2.2 50 837-890 59-112 (213)
298 PRK13552 frdB fumarate reducta 95.0 0.012 2.6E-07 65.4 2.0 19 870-888 205-223 (239)
299 COG1142 HycB Fe-S-cluster-cont 94.9 0.011 2.4E-07 60.8 1.5 56 826-893 49-104 (165)
300 PF15254 CCDC14: Coiled-coil d 94.9 9.7 0.00021 47.9 26.1 153 158-312 484-689 (861)
301 TIGR02912 sulfite_red_C sulfit 94.9 0.0088 1.9E-07 69.8 0.7 20 872-891 202-221 (314)
302 PRK09477 napH quinol dehydroge 94.8 0.012 2.6E-07 67.0 1.7 20 871-890 242-261 (271)
303 PF12795 MscS_porin: Mechanose 94.8 4.1 8.9E-05 45.6 21.8 19 519-537 118-136 (240)
304 PF06705 SF-assemblin: SF-asse 94.8 8.8 0.00019 43.2 33.6 71 9-79 5-80 (247)
305 KOG1853|consensus 94.8 6.6 0.00014 42.4 21.4 41 182-222 126-166 (333)
306 KOG4809|consensus 94.8 13 0.00028 44.9 29.5 33 16-48 331-363 (654)
307 KOG2991|consensus 94.8 7.4 0.00016 42.2 22.5 24 53-76 106-129 (330)
308 PRK05035 electron transport co 94.7 0.024 5.2E-07 72.2 4.0 24 667-690 292-321 (695)
309 TIGR03017 EpsF chain length de 94.7 3.6 7.8E-05 50.7 23.1 34 19-52 167-200 (444)
310 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.6 3.8 8.2E-05 41.3 18.8 47 90-137 72-118 (132)
311 KOG4360|consensus 94.6 4.3 9.4E-05 48.3 21.2 24 62-85 159-182 (596)
312 TIGR01005 eps_transp_fam exopo 94.5 5.1 0.00011 53.0 25.2 13 263-275 32-44 (754)
313 PRK09626 oorD 2-oxoglutarate-a 94.5 0.017 3.6E-07 55.6 1.4 21 871-891 53-73 (103)
314 TIGR03224 benzo_boxA benzoyl-C 94.5 0.012 2.6E-07 71.3 0.4 31 871-901 39-69 (411)
315 PRK09624 porD pyuvate ferredox 94.4 0.016 3.4E-07 55.8 1.1 21 871-891 81-101 (105)
316 COG1139 Uncharacterized conser 94.4 0.023 5E-07 66.0 2.5 51 837-887 314-374 (459)
317 COG1145 NapF Ferredoxin [Energ 94.3 0.019 4E-07 54.6 1.3 24 870-893 62-85 (99)
318 PRK08318 dihydropyrimidine deh 94.3 0.024 5.1E-07 69.2 2.5 25 871-895 377-402 (420)
319 TIGR01660 narH nitrate reducta 94.3 0.02 4.4E-07 67.3 1.8 69 826-913 179-247 (492)
320 PF13870 DUF4201: Domain of un 94.2 3.7 8.1E-05 43.6 18.8 92 521-618 84-175 (177)
321 COG1143 NuoI Formate hydrogenl 94.2 0.017 3.7E-07 60.3 0.8 49 872-920 56-111 (172)
322 PF13484 Fer4_16: 4Fe-4S doubl 94.2 0.0099 2.2E-07 52.2 -0.7 19 873-891 2-20 (67)
323 PRK10869 recombination and rep 94.2 13 0.00029 46.9 26.5 31 593-623 339-369 (553)
324 KOG4360|consensus 94.1 2.6 5.6E-05 50.1 18.1 101 518-622 202-302 (596)
325 TIGR01000 bacteriocin_acc bact 94.1 7.3 0.00016 48.2 23.9 18 174-191 242-259 (457)
326 PF12325 TMF_TATA_bd: TATA ele 94.1 2.3 5E-05 41.8 15.3 47 4-50 18-64 (120)
327 COG1146 Ferredoxin [Energy pro 94.1 0.024 5.1E-07 50.0 1.4 22 870-891 40-61 (68)
328 PRK12769 putative oxidoreducta 94.0 0.025 5.4E-07 73.1 2.1 58 828-891 13-76 (654)
329 PF06818 Fez1: Fez1; InterPro 94.0 10 0.00022 40.6 20.8 50 399-450 6-55 (202)
330 PRK09898 hypothetical protein; 94.0 0.022 4.7E-07 62.3 1.3 48 870-920 120-170 (208)
331 TIGR02494 PFLE_PFLC glycyl-rad 94.0 0.026 5.6E-07 65.5 1.9 22 870-891 81-102 (295)
332 PRK09623 vorD 2-ketoisovalerat 94.0 0.021 4.5E-07 55.1 0.9 21 871-891 81-101 (105)
333 PF10481 CENP-F_N: Cenp-F N-te 94.0 3.1 6.6E-05 45.7 17.0 27 596-622 163-189 (307)
334 KOG1899|consensus 93.9 11 0.00023 46.1 22.7 48 5-52 107-154 (861)
335 COG1149 MinD superfamily P-loo 93.8 0.023 5.1E-07 62.5 1.0 25 869-893 97-121 (284)
336 TIGR02163 napH_ ferredoxin-typ 93.8 0.024 5.2E-07 64.0 1.0 19 871-889 234-252 (255)
337 PF09787 Golgin_A5: Golgin sub 93.8 17 0.00038 45.5 26.2 27 24-50 215-241 (511)
338 PF10473 CENP-F_leu_zip: Leuci 93.7 8.7 0.00019 38.9 20.4 93 20-114 7-102 (140)
339 COG0497 RecN ATPase involved i 93.7 24 0.00053 43.8 27.7 28 595-622 342-369 (557)
340 PRK10361 DNA recombination pro 93.7 22 0.00048 43.3 25.8 20 120-139 109-128 (475)
341 PF08614 ATG16: Autophagy prot 93.7 0.9 2E-05 49.1 12.9 118 11-141 69-189 (194)
342 TIGR00315 cdhB CO dehydrogenas 93.6 0.58 1.3E-05 48.6 10.8 118 974-1098 15-144 (162)
343 PF13510 Fer2_4: 2Fe-2S iron-s 93.5 0.052 1.1E-06 49.7 2.6 33 661-704 50-82 (82)
344 PRK11433 aldehyde oxidoreducta 93.5 0.086 1.9E-06 56.8 4.6 78 663-740 50-162 (217)
345 PF06785 UPF0242: Uncharacteri 93.5 5 0.00011 45.2 17.9 17 123-139 200-216 (401)
346 PRK10361 DNA recombination pro 93.4 13 0.00029 45.2 23.2 7 281-287 252-258 (475)
347 PF05622 HOOK: HOOK protein; 93.4 0.023 4.9E-07 74.0 0.0 61 560-622 365-425 (713)
348 COG1245 Predicted ATPase, RNas 93.4 0.064 1.4E-06 62.8 3.6 54 872-933 51-108 (591)
349 COG2080 CoxS Aerobic-type carb 93.4 0.042 9.1E-07 55.6 1.8 76 664-739 3-114 (156)
350 COG3862 Uncharacterized protei 93.3 0.089 1.9E-06 48.5 3.6 55 905-971 3-59 (117)
351 KOG0804|consensus 93.3 3.4 7.3E-05 48.6 16.9 100 125-230 348-447 (493)
352 PF13187 Fer4_9: 4Fe-4S diclus 93.2 0.02 4.3E-07 48.0 -0.6 24 872-895 1-24 (55)
353 TIGR03478 DMSO_red_II_bet DMSO 93.1 0.038 8.3E-07 62.6 1.2 20 872-891 163-182 (321)
354 TIGR03149 cyt_nit_nrfC cytochr 93.1 0.041 9E-07 60.8 1.4 45 871-920 92-141 (225)
355 COG0479 FrdB Succinate dehydro 93.0 0.078 1.7E-06 58.0 3.4 19 869-887 196-214 (234)
356 PRK09625 porD pyruvate flavodo 93.0 0.026 5.7E-07 56.8 -0.2 18 872-889 90-107 (133)
357 COG2878 Predicted NADH:ubiquin 93.0 0.027 5.8E-07 57.7 -0.1 58 828-901 118-175 (198)
358 PF07111 HCR: Alpha helical co 92.9 32 0.0007 43.1 59.4 34 228-265 390-423 (739)
359 PF10498 IFT57: Intra-flagella 92.9 2.7 5.8E-05 49.7 16.1 20 293-314 76-95 (359)
360 PF14697 Fer4_21: 4Fe-4S diclu 92.9 0.051 1.1E-06 46.3 1.5 39 872-913 7-45 (59)
361 KOG0243|consensus 92.9 14 0.0003 48.7 23.3 36 53-88 432-467 (1041)
362 PF04111 APG6: Autophagy prote 92.9 0.95 2.1E-05 52.6 12.3 69 168-237 64-132 (314)
363 PRK05659 sulfur carrier protei 92.8 0.12 2.7E-06 45.1 3.8 20 665-684 1-20 (66)
364 TIGR00273 iron-sulfur cluster- 92.8 0.037 8.1E-07 66.8 0.7 58 828-888 293-360 (432)
365 TIGR01372 soxA sarcosine oxida 92.8 0.13 2.8E-06 69.6 5.8 24 662-685 10-33 (985)
366 COG0497 RecN ATPase involved i 92.7 33 0.00072 42.7 27.7 27 287-314 406-432 (557)
367 COG0437 HybA Fe-S-cluster-cont 92.7 0.066 1.4E-06 57.2 2.3 83 773-891 64-156 (203)
368 KOG1899|consensus 92.6 23 0.0005 43.4 22.9 60 13-72 108-167 (861)
369 PRK10882 hydrogenase 2 protein 92.6 0.077 1.7E-06 61.6 2.9 10 879-888 193-202 (328)
370 PRK07118 ferredoxin; Validated 92.6 0.049 1.1E-06 62.1 1.3 60 824-894 131-191 (280)
371 PF04156 IncA: IncA protein; 92.6 3.8 8.3E-05 44.1 15.9 25 22-46 87-111 (191)
372 PRK00945 acetyl-CoA decarbonyl 92.6 1.8 4E-05 45.3 12.6 122 974-1102 22-156 (171)
373 TIGR03017 EpsF chain length de 92.5 23 0.00049 43.7 24.7 13 263-275 29-41 (444)
374 KOG2129|consensus 92.5 24 0.00053 41.1 21.9 41 182-222 285-325 (552)
375 PF04156 IncA: IncA protein; 92.5 4.7 0.0001 43.4 16.5 66 10-75 82-150 (191)
376 PF08614 ATG16: Autophagy prot 92.5 1.2 2.6E-05 48.1 11.7 15 174-188 122-136 (194)
377 TIGR03315 Se_ygfK putative sel 92.5 0.11 2.4E-06 68.8 4.5 21 872-892 922-942 (1012)
378 TIGR02060 aprB adenosine phosp 92.4 0.038 8.3E-07 55.3 0.0 24 870-893 44-67 (132)
379 TIGR03478 DMSO_red_II_bet DMSO 92.2 0.076 1.7E-06 60.3 2.2 76 774-889 127-216 (321)
380 PRK09898 hypothetical protein; 92.2 0.058 1.2E-06 59.0 1.2 20 871-890 181-200 (208)
381 TIGR03193 4hydroxCoAred 4-hydr 92.1 0.098 2.1E-06 53.0 2.5 69 664-732 1-104 (148)
382 TIGR02179 PorD_KorD 2-oxoacid: 92.0 0.054 1.2E-06 49.1 0.5 19 872-890 56-74 (78)
383 PF06160 EzrA: Septation ring 92.0 44 0.00096 42.4 55.8 44 42-85 42-91 (560)
384 PRK10194 ferredoxin-type prote 92.0 0.09 1.9E-06 55.1 2.2 21 872-892 105-125 (163)
385 PF04912 Dynamitin: Dynamitin 91.9 35 0.00076 41.2 24.5 11 342-352 42-52 (388)
386 PF10186 Atg14: UV radiation r 91.8 11 0.00025 43.5 20.0 27 18-44 22-48 (302)
387 PF13237 Fer4_10: 4Fe-4S diclu 91.8 0.04 8.6E-07 45.6 -0.5 15 870-884 38-52 (52)
388 COG0437 HybA Fe-S-cluster-cont 91.7 0.1 2.2E-06 55.8 2.2 66 828-912 67-132 (203)
389 PRK09626 oorD 2-oxoglutarate-a 91.7 0.091 2E-06 50.5 1.7 21 872-892 17-37 (103)
390 PF12325 TMF_TATA_bd: TATA ele 91.6 6.2 0.00013 38.9 14.2 70 41-116 20-92 (120)
391 PF00769 ERM: Ezrin/radixin/mo 91.6 11 0.00024 42.3 18.4 101 12-114 8-111 (246)
392 PRK07118 ferredoxin; Validated 91.6 0.062 1.3E-06 61.3 0.6 32 872-903 243-274 (280)
393 COG1029 FwdB Formylmethanofura 91.6 0.63 1.4E-05 53.0 8.2 119 1109-1236 65-199 (429)
394 PRK09908 xanthine dehydrogenas 91.5 0.17 3.7E-06 51.9 3.5 72 662-733 6-111 (159)
395 PF12795 MscS_porin: Mechanose 91.5 27 0.00059 39.1 24.5 57 173-230 155-211 (240)
396 PF13247 Fer4_11: 4Fe-4S diclu 91.5 0.041 8.9E-07 52.1 -0.8 12 877-888 82-93 (98)
397 TIGR03198 pucE xanthine dehydr 91.5 0.11 2.3E-06 53.1 2.1 70 663-732 2-105 (151)
398 KOG0804|consensus 91.5 8.7 0.00019 45.3 17.3 42 97-138 408-449 (493)
399 COG1144 Pyruvate:ferredoxin ox 91.4 0.083 1.8E-06 48.0 1.1 18 872-889 67-84 (91)
400 PF10186 Atg14: UV radiation r 91.4 13 0.00029 42.9 19.9 11 363-373 214-224 (302)
401 PF10498 IFT57: Intra-flagella 91.4 5 0.00011 47.4 16.0 95 11-114 222-316 (359)
402 KOG0982|consensus 91.3 36 0.00079 40.0 26.2 21 162-182 368-388 (502)
403 PF15254 CCDC14: Coiled-coil d 91.2 19 0.00041 45.5 20.7 13 302-314 699-711 (861)
404 COG1842 PspA Phage shock prote 91.2 27 0.00059 38.5 22.6 46 7-52 29-74 (225)
405 PF12800 Fer4_4: 4Fe-4S bindin 91.2 0.089 1.9E-06 32.7 0.7 15 872-886 3-17 (17)
406 COG1145 NapF Ferredoxin [Energ 91.2 0.094 2E-06 49.7 1.3 19 872-890 30-48 (99)
407 TIGR03048 PS_I_psaC photosyste 91.2 0.077 1.7E-06 48.4 0.6 22 871-892 8-29 (80)
408 PRK12386 fumarate reductase ir 91.2 0.2 4.3E-06 56.0 4.0 19 870-888 199-217 (251)
409 PF04111 APG6: Autophagy prote 91.1 3.1 6.7E-05 48.4 13.8 31 128-160 103-133 (314)
410 KOG4438|consensus 91.0 39 0.00084 40.0 29.4 63 23-85 138-203 (446)
411 PF13183 Fer4_8: 4Fe-4S diclus 91.0 0.018 3.8E-07 48.7 -3.5 16 871-886 41-56 (57)
412 PF05384 DegS: Sensor protein 91.0 22 0.00047 36.9 20.2 67 524-594 87-153 (159)
413 PLN03229 acetyl-coenzyme A car 91.0 56 0.0012 41.7 24.9 11 121-131 601-611 (762)
414 PF09738 DUF2051: Double stran 91.0 17 0.00036 41.9 19.1 87 399-487 73-163 (302)
415 KOG2129|consensus 90.9 38 0.00082 39.6 24.3 37 5-41 46-82 (552)
416 PLN02939 transferase, transfer 90.9 42 0.00091 44.6 24.7 65 53-119 224-291 (977)
417 PRK13984 putative oxidoreducta 90.9 0.082 1.8E-06 67.8 0.7 90 809-922 43-203 (604)
418 PF06785 UPF0242: Uncharacteri 90.9 30 0.00065 39.3 20.0 47 145-193 127-173 (401)
419 PF13166 AAA_13: AAA domain 90.8 36 0.00078 44.7 25.2 9 663-671 485-493 (712)
420 PF12777 MT: Microtubule-bindi 90.8 16 0.00035 43.3 19.7 36 4-39 10-45 (344)
421 PF04012 PspA_IM30: PspA/IM30 90.6 31 0.00067 38.0 23.2 46 7-52 28-73 (221)
422 PRK14993 tetrathionate reducta 90.5 0.16 3.6E-06 56.7 2.5 17 873-889 132-148 (244)
423 PRK10882 hydrogenase 2 protein 90.5 0.13 2.7E-06 59.8 1.6 48 871-920 110-159 (328)
424 TIGR02066 dsrB sulfite reducta 90.2 0.11 2.3E-06 61.1 0.7 15 975-989 270-284 (341)
425 PRK08348 NADH-plastoquinone ox 90.2 0.11 2.4E-06 51.4 0.8 20 872-891 43-62 (120)
426 PF09304 Cortex-I_coil: Cortex 90.2 14 0.0003 35.2 14.2 42 573-614 57-98 (107)
427 KOG0243|consensus 90.2 79 0.0017 42.0 31.3 11 730-740 964-974 (1041)
428 KOG4673|consensus 90.0 60 0.0013 40.5 57.3 35 3-37 347-381 (961)
429 PF05384 DegS: Sensor protein 90.0 26 0.00057 36.3 22.0 41 72-114 30-70 (159)
430 KOG4302|consensus 90.0 19 0.00041 45.5 19.7 96 521-620 160-265 (660)
431 COG2433 Uncharacterized conser 89.8 4.9 0.00011 49.2 13.9 46 403-450 422-467 (652)
432 PRK09853 putative selenate red 89.7 0.18 3.9E-06 66.6 2.3 56 828-888 886-943 (1019)
433 PRK14993 tetrathionate reducta 89.7 0.066 1.4E-06 59.8 -1.5 21 870-890 97-119 (244)
434 COG2433 Uncharacterized conser 89.6 4.3 9.4E-05 49.6 13.4 80 7-86 420-505 (652)
435 COG2768 Uncharacterized Fe-S c 89.6 0.14 3E-06 56.8 1.1 17 872-888 222-238 (354)
436 PRK08222 hydrogenase 4 subunit 89.6 0.12 2.6E-06 55.0 0.6 45 872-918 39-87 (181)
437 PRK12809 putative oxidoreducta 89.6 0.17 3.8E-06 65.1 2.1 22 870-891 53-76 (639)
438 TIGR02745 ccoG_rdxA_fixG cytoc 89.4 0.11 2.4E-06 62.6 0.1 17 871-888 255-271 (434)
439 PLN00071 photosystem I subunit 89.4 0.12 2.7E-06 47.2 0.4 21 872-892 10-30 (81)
440 TIGR01582 FDH-beta formate deh 89.4 0.23 5E-06 56.5 2.6 11 878-888 167-177 (283)
441 KOG0982|consensus 89.3 52 0.0011 38.8 24.3 18 553-570 369-386 (502)
442 TIGR02700 flavo_MJ0208 archaeo 89.3 0.13 2.9E-06 57.3 0.6 21 871-891 177-197 (234)
443 COG4656 RnfC Predicted NADH:ub 89.2 0.18 3.9E-06 60.4 1.6 33 667-699 287-326 (529)
444 PF13746 Fer4_18: 4Fe-4S diclu 89.2 0.13 2.8E-06 45.5 0.3 18 870-887 49-66 (69)
445 PRK05888 NADH dehydrogenase su 89.2 0.23 4.9E-06 52.2 2.2 19 872-890 59-77 (164)
446 PF10234 Cluap1: Clusterin-ass 89.2 20 0.00043 40.4 17.3 76 161-237 176-251 (267)
447 PRK07440 hypothetical protein; 89.2 0.63 1.4E-05 41.2 4.6 25 662-686 2-26 (70)
448 PF15450 DUF4631: Domain of un 89.1 62 0.0013 39.4 30.5 235 4-251 253-512 (531)
449 PRK02651 photosystem I subunit 89.0 0.18 3.9E-06 46.0 1.2 22 871-892 9-30 (81)
450 PRK06273 ferredoxin; Provision 88.9 0.15 3.3E-06 53.2 0.6 20 872-891 50-69 (165)
451 TIGR00276 iron-sulfur cluster 88.8 0.11 2.5E-06 59.1 -0.3 19 872-890 160-178 (282)
452 COG1149 MinD superfamily P-loo 88.8 0.23 5E-06 55.0 2.0 42 872-919 70-114 (284)
453 PRK00945 acetyl-CoA decarbonyl 88.7 3.6 7.9E-05 43.1 10.6 120 1114-1238 25-155 (171)
454 PRK10246 exonuclease subunit S 88.7 1.2E+02 0.0025 42.0 68.8 47 584-631 713-759 (1047)
455 PF10212 TTKRSYEDQ: Predicted 88.7 59 0.0013 39.8 21.8 98 518-622 417-514 (518)
456 PRK10330 formate dehydrogenase 88.5 0.23 5.1E-06 53.0 1.8 22 871-892 129-156 (181)
457 TIGR03149 cyt_nit_nrfC cytochr 88.5 0.23 4.9E-06 55.0 1.7 33 872-913 126-158 (225)
458 TIGR01971 NuoI NADH-quinone ox 88.4 0.17 3.7E-06 50.2 0.6 22 871-892 43-64 (122)
459 COG3206 GumC Uncharacterized p 88.1 77 0.0017 39.3 25.1 39 14-52 186-224 (458)
460 PF03148 Tektin: Tektin family 88.1 68 0.0015 38.6 30.3 102 517-622 247-365 (384)
461 PRK10698 phage shock protein P 88.1 47 0.001 36.7 23.2 42 11-52 33-74 (222)
462 CHL00065 psaC photosystem I su 88.0 0.2 4.3E-06 45.8 0.8 21 872-892 10-30 (81)
463 COG1600 Uncharacterized Fe-S p 87.5 0.15 3.2E-06 58.9 -0.5 21 872-892 186-206 (337)
464 COG2768 Uncharacterized Fe-S c 87.5 0.24 5.1E-06 55.1 1.1 21 871-891 193-213 (354)
465 PRK15055 anaerobic sulfite red 87.4 0.33 7.2E-06 56.6 2.3 17 871-887 307-323 (344)
466 KOG2991|consensus 87.3 50 0.0011 36.2 27.8 30 56-85 137-166 (330)
467 TIGR02176 pyruv_ox_red pyruvat 87.3 0.27 6E-06 66.8 1.8 21 871-891 683-703 (1165)
468 PRK13409 putative ATPase RIL; 87.2 0.26 5.6E-06 62.6 1.4 55 872-933 50-107 (590)
469 TIGR00314 cdhA CO dehydrogenas 87.1 0.18 3.9E-06 63.9 -0.1 16 872-887 438-453 (784)
470 PRK00941 acetyl-CoA decarbonyl 87.1 0.16 3.5E-06 64.5 -0.6 17 871-887 442-458 (781)
471 TIGR03319 YmdA_YtgF conserved 87.0 49 0.0011 41.4 20.9 8 307-314 209-216 (514)
472 PRK09853 putative selenate red 86.9 0.23 5E-06 65.7 0.7 77 872-949 887-973 (1019)
473 TIGR02066 dsrB sulfite reducta 86.9 0.47 1E-05 55.7 3.2 46 873-921 183-231 (341)
474 PF11932 DUF3450: Protein of u 86.8 34 0.00074 38.6 18.0 45 8-52 27-71 (251)
475 PRK12809 putative oxidoreducta 86.7 0.38 8.2E-06 62.1 2.5 20 872-891 86-105 (639)
476 PRK07570 succinate dehydrogena 86.7 0.32 6.9E-06 54.5 1.6 18 870-887 211-228 (250)
477 COG1152 CdhA CO dehydrogenase/ 86.6 0.17 3.6E-06 60.5 -0.7 53 828-886 400-453 (772)
478 TIGR02936 fdxN_nitrog ferredox 86.6 0.24 5.2E-06 46.4 0.4 20 872-891 22-41 (91)
479 COG1148 HdrA Heterodisulfide r 86.5 0.3 6.5E-06 57.8 1.3 25 869-893 585-609 (622)
480 TIGR02338 gimC_beta prefoldin, 86.5 17 0.00037 35.3 13.3 42 11-52 5-46 (110)
481 TIGR03336 IOR_alpha indolepyru 86.4 0.3 6.5E-06 62.3 1.3 17 872-888 579-595 (595)
482 cd01916 ACS_1 Acetyl-CoA synth 86.3 0.15 3.3E-06 64.8 -1.4 19 870-888 402-420 (731)
483 TIGR02977 phageshock_pspA phag 86.3 58 0.0013 35.9 22.9 166 7-177 29-217 (219)
484 KOG4807|consensus 86.3 72 0.0016 37.0 21.0 202 29-240 244-471 (593)
485 KOG3256|consensus 86.2 0.36 7.8E-06 48.4 1.4 74 848-924 91-170 (212)
486 COG1142 HycB Fe-S-cluster-cont 86.2 0.42 9.1E-06 49.4 2.0 89 804-918 5-96 (165)
487 PRK12704 phosphodiesterase; Pr 86.1 1E+02 0.0022 38.7 23.1 164 8-177 30-193 (520)
488 PRK10884 SH3 domain-containing 86.0 10 0.00023 41.2 12.5 80 28-109 91-170 (206)
489 TIGR02951 DMSO_dmsB DMSO reduc 85.9 0.28 6.1E-06 51.3 0.6 84 801-913 3-101 (161)
490 COG3206 GumC Uncharacterized p 85.8 98 0.0021 38.3 22.9 213 28-248 174-389 (458)
491 COG4026 Uncharacterized protei 85.8 6 0.00013 42.0 10.0 83 3-85 129-214 (290)
492 KOG4438|consensus 85.8 84 0.0018 37.3 31.4 229 8-241 172-437 (446)
493 TIGR03287 methan_mark_16 putat 85.7 0.32 6.9E-06 57.2 1.0 72 801-911 294-367 (391)
494 COG5293 Predicted ATPase [Gene 85.7 86 0.0019 37.4 24.1 232 3-241 194-429 (591)
495 PRK09343 prefoldin subunit bet 85.6 23 0.0005 35.1 13.8 90 6-97 4-111 (121)
496 PF10146 zf-C4H2: Zinc finger- 85.6 25 0.00054 38.9 15.4 98 9-108 4-105 (230)
497 COG4231 Indolepyruvate ferredo 85.6 0.39 8.5E-06 58.9 1.6 53 827-891 576-628 (640)
498 PRK09841 cryptic autophosphory 85.5 26 0.00057 46.0 18.5 146 405-550 246-399 (726)
499 PF04912 Dynamitin: Dynamitin 85.5 94 0.002 37.6 26.3 214 2-230 94-387 (388)
500 PF12252 SidE: Dot/Icm substra 85.4 1.3E+02 0.0027 39.8 22.7 208 405-622 1105-1339(1439)
No 1
>KOG2282|consensus
Probab=100.00 E-value=6.6e-128 Score=1064.08 Aligned_cols=594 Identities=70% Similarity=1.131 Sum_probs=565.6
Q ss_pred CCcEEEEECCEEEEeCCCCcchh------------------------------------hhhhhcCCCCCCCEEEcCCHH
Q psy11935 662 NEKFEVFIDDKKVMVDPGTTVLQ------------------------------------PVAACAMPVMKGWRVKTNSEM 705 (1334)
Q Consensus 662 ~~~~~~~idg~~~~v~~g~til~------------------------------------~~~ac~~~~~~gm~v~t~s~~ 705 (1334)
++.|+++|||++|.|+||+|||| |++||+|||+.||+|.|+|+.
T Consensus 30 ~~~ievfvd~~~v~v~pg~tvlqac~~~gv~iprfcyh~rlsvagncrmclvevekspkpva~campvm~g~~iktns~~ 109 (708)
T KOG2282|consen 30 PNKIEVFVDDQSVMVEPGTTVLQACAKVGVDIPRFCYHERLSVAGNCRMCLVEVEKSPKPVAACAMPVMKGWKIKTNSDK 109 (708)
T ss_pred ccceEEEECCeeEeeCCCcHHHHHHHHhCCCcchhhhhhhhhhccceeEEEEEeccCCCcchhhcccccCCceeecCchH
Confidence 78999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCCCchhhhHHHhCCCCCcccccccCCCCCccchhhhhhccCCCCcccccceeec
Q psy11935 706 TRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFTDIDFSGKSGTYTRVTRQRSWGLIPSRVFLQSINR 785 (1334)
Q Consensus 706 ~~~~r~~~~~~ll~~hp~~C~~c~~~g~c~lq~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~lc~~~~v~~ 785 (1334)
++++|++||||||.|||||||||||||||+|||++|.||++++||.+ +|| +|++
T Consensus 110 ~kkaregvmefll~nhpldcpicdqggecdlqdq~m~fgsdr~rf~~----~kr----------------------aved 163 (708)
T KOG2282|consen 110 SKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQAMAFGSDRSRFTE----GKR----------------------AVED 163 (708)
T ss_pred HHHHHHHHHHHHHhCCCCCCCccCCCCcCcchHhHhhhcCchhhhhh----hhh----------------------hhhc
Confidence 99999999999999999999999999999999999999999999999 899 9999
Q ss_pred CCCcccccccccCCCCcEEEcCCHHHHHHHHHHHHHHhhCCCCCCcccccCCccchhhhhcccCccccccCCCCCceecc
Q psy11935 786 HWIGPVAACAMPVMKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGNDLGTTGRGSDMQVGT 865 (1334)
Q Consensus 786 ~~~~~~~aC~~~v~~gm~i~t~s~~~r~~r~~~~~~ll~~h~~~C~~C~~~g~c~~~~~e~~g~~~~~~~~rg~~~~i~~ 865 (1334)
++.||+ |.| -|+|| |+|+|| |||+.||+|+++||..|||.+++||+
T Consensus 164 knigpl------------vkt--imtrc--------------iqctrc------vrfaseiagv~dlgttgrg~d~qigt 209 (708)
T KOG2282|consen 164 KNIGPL------------VKT--IMTRC--------------IQCTRC------VRFASEIAGVDDLGTTGRGNDMQIGT 209 (708)
T ss_pred CccchH------------HHH--HHHHH--------------HhHHHH------HHHHHhhcCCcccccccCCCcchHHH
Confidence 999999 999 99999 999999 99999999999999999999999999
Q ss_pred ccccccccccccccccccccccccccCCcccCCCCcceeeeeecccCCCCCceEEEeeCCEEEEecCCCCCCCCcccccc
Q psy11935 866 YVEKLFLSELSGNVIDLCPVGALTSKPYSFTARPWETRKTESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLAD 945 (1334)
Q Consensus 866 ~~~~~~~~~~cg~cv~~CpvGAl~~k~~~~~~r~we~~~~~s~c~~C~~gC~i~v~v~~g~v~ri~p~~~~~vn~g~lC~ 945 (1334)
|.++.+.++++||.||+|||||||+|||.|++||||+++++|+++++++|++|.|.+|.|+|+||.|+.|+++|+.||.|
T Consensus 210 yvek~f~selsgniidicpvgaltskpyaf~arpwe~rktesidv~davgsnivvs~rt~ev~ri~pr~nedineewi~d 289 (708)
T KOG2282|consen 210 YVEKLFMSELSGNIIDICPVGALTSKPYAFTARPWETRKTESIDVMDAVGSNIVVSTRTGEVLRILPRMNEDINEEWISD 289 (708)
T ss_pred HHHHHHHHhhcCCeeeeccccccccCcceeeccccccccccceehhhhccCcEEEecCCccceeeccccccccchhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccCCceEecCCCCeeecCHHHHHHHHHHHhcc---CCEEEEeCCcCCHHHHHHHHHHHHHhCCCcccc
Q psy11935 946 KGRFAYDGLKRQRLLTPFVRNCDGQLVATEWEDALIAVAQKLQT---SEVAGVVGSLADAEAMVALKDLLNKLGSEDLYT 1022 (1334)
Q Consensus 946 kgr~~~~~l~~~Rl~~PliR~~~g~~~~iSWdeAl~~ia~~L~~---~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~ 1022 (1334)
|.||+||++..+||+.||+|..+|.|+++||++||..+|..|++ +.+++++|+..+.|.+.+++.|++++|+.++.+
T Consensus 290 ksrfa~dglkrqrl~~pmvr~~~g~l~~~~we~al~~va~~~~~~~~~~~a~iag~L~daea~valkdl~nrl~se~v~t 369 (708)
T KOG2282|consen 290 KSRFAYDGLKRQRLTEPMVRNEDGLLKAVSWEDALSRVAGMLQSFQGKQIAAIAGGLVDAEALVALKDLLNRVGSENVCT 369 (708)
T ss_pred cceeeecchhhhhhcccceeCCCCceeeeeHHHHHHHHHHHHHhcCccceeeeccchhhHHHHHHHHHHHhhcCccccee
Confidence 99999999999999999999989999999999999999999998 889999999999999999999999999999999
Q ss_pred CCCCCcchhhhhhhhhccCCCCcccccccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCCCCccccccCCCc
Q psy11935 1023 EYAFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGES 1102 (1334)
Q Consensus 1023 ~~~~~~~~~~~~~~~~~~~~~~~~die~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~~~t~~~a~~Gtd 1102 (1334)
...|. +.+.+++++|+++.++..+++||.++++|+||+.++|.++.|+|+.+.++..++.+|+|..+++|.+.+||++
T Consensus 370 e~~f~--s~gtdlrsnyl~nt~iag~e~adavllVgtnpr~eap~~narirks~~~~~~qv~~Ig~~aDl~y~~~~lga~ 447 (708)
T KOG2282|consen 370 EEVFP--GGGTDLRSNYLLNTTIAGVEEADAVLLVGTNPRFEAPLVNARIRKSWLHNDLQVALIGPPVDLTYDYDHLGAS 447 (708)
T ss_pred ecccC--CCCchhhhhhhhhcchhhhcccceeeeecCCccccccccchhhheeeeeccceeeeecCCcceeeeeccCCCc
Confidence 98887 5678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcHHHHHHHHhcCCCcEEEEcCCc---ccHHHHHHHHHHHHHhhcCCCCCCCCCcccccchhhhhhhhhhhc
Q psy11935 1103 ADLIKQLASGSHPFSKKLSAAKKPLIVVGADI---SDGAAVLALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAALDI 1179 (1334)
Q Consensus 1103 ~a~l~~l~~g~~~~A~~l~~a~~~~ii~G~~~---~~g~~~~~al~~l~~~~g~~Gg~~~~~~~~~~l~~~~n~~G~~~~ 1179 (1334)
+.++..+++|++.||+.+..++.|+||+|.+. .+|.++...+..++..++.. ..|+.+|+|+..+..+|+++.
T Consensus 448 ~~i~~~Ia~g~h~fak~l~~ak~p~iIvga~~l~r~dgaAil~~v~qia~kL~~~----~~w~~~nvL~~~a~q~~aLd~ 523 (708)
T KOG2282|consen 448 AKILKDIASGSHPFSKVLKEAKKPAIIVGASALQRNDGAAILAAVSSIAQKLRMT----PDWKVLNVLQRIAAQVGALDV 523 (708)
T ss_pred HHHHHHHHcCccHHHHHhccCCCceEEEcchhhcccchhHHHHHHHHHHHHhccC----CcceeehHHHHhhhhhhhccc
Confidence 99999999999999999999999999999988 78888888888888887653 579999999999999999999
Q ss_pred CCCcchhhHhcCCCcEEEEECCChhhhHHhhcCCCceEEEEcCCCChhhccccEEecCCCCCCCCcccccCCCceEEecc
Q psy11935 1180 GYKPGTSAIREKPPKVLFLLGADEGSISRDDVGKDCFIIYQGHHGDHGASIADAILPGAAYTEKQSTYVNTEGRAQQTLT 1259 (1334)
Q Consensus 1180 g~~pg~~~i~~g~ik~l~~~g~np~~~~~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~Gt~~n~egrvq~~~~ 1259 (1334)
|+.+|...+....+|++|++|+|.....++.+++.+||||++||+|..+..||||||++.|+|+.|+|+|++|+.|...|
T Consensus 524 gyk~ga~~~~k~~~KVlylL~Ad~g~vt~~~lPkd~fvvyqghhgD~ga~~AdvvlpgaaytekeGtyvntegr~Qqt~p 603 (708)
T KOG2282|consen 524 GYKAGVAAIRKNPPKVLFLLGADAGKVTRQDLPKDCFVVYQGHHGDVGAPIADVVLPGAAYTEKEGTYVNTEGRAQQTKP 603 (708)
T ss_pred cchhhhHHHhcCCceEEEEeccCCCcchhhcCChhheEEeeeeecccccccceeecceeeEecccceeecccCccccccC
Confidence 99999888888899999999999977788899999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccHHHHHHHHHHHhc-------------------CCCC------C-----------------CCcccccccc
Q psy11935 1260 AVTPPGLAREDWKIIRALSEGVS-------------------SNLS------S-----------------EPVDVKQKNL 1297 (1334)
Q Consensus 1260 av~P~gear~dw~Il~~La~~lg-------------------~~~~------~-----------------~~~~~~~~~~ 1297 (1334)
++.|||++|.||.|+++|++.-| |+|. . .|+. +...+
T Consensus 604 av~ppg~ar~dwkIirALSevsg~~Lpyssl~~vr~rle~vaPnLVr~de~E~Aafgpsakp~sket~~ttp~~-p~~~l 682 (708)
T KOG2282|consen 604 AVSPPGDAREDWKIIRALSEVSGKTLPYDTLDEVRNRLEEVAPNLVRYDDLEPAAFGPQAKPLSKETGSTTPDD-PLLEL 682 (708)
T ss_pred CCCCCcccccchHHHHHHHHhcCCCCCcccHHHHHHhhhhcCCcceecccccccccccccchhhhhhcCCCCCc-chHHH
Confidence 99999999999999999999977 2211 1 2222 12357
Q ss_pred ccccccchhhhchHHHHHhHHHHHh
Q psy11935 1298 EDYYMTDPISRASGTMAKCIQAVHK 1322 (1334)
Q Consensus 1298 ~~~y~td~i~r~s~~m~~~~~~~~~ 1322 (1334)
+||||||+|||+|++||+|+++..+
T Consensus 683 edfYMTNSISRASk~MAQCsaallK 707 (708)
T KOG2282|consen 683 EDFYMTNSISRASKTMAQCSKAVLK 707 (708)
T ss_pred HHHhhhhhhhhhhHHHHHHHHHHhc
Confidence 8999999999999999999998754
No 2
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=100.00 E-value=4.1e-123 Score=1163.58 Aligned_cols=591 Identities=55% Similarity=0.912 Sum_probs=535.7
Q ss_pred cEEEEECCEEEEeCCCCcchh-------------------------------------hhhhhcCCCCCCCEEEcCCHHH
Q psy11935 664 KFEVFIDDKKVMVDPGTTVLQ-------------------------------------PVAACAMPVMKGWRVKTNSEMT 706 (1334)
Q Consensus 664 ~~~~~idg~~~~v~~g~til~-------------------------------------~~~ac~~~~~~gm~v~t~s~~~ 706 (1334)
||+|+|||++|+||+|+|||| +++||+|||.+||+|.|+||+|
T Consensus 1 m~~~~Idg~~v~v~~g~til~a~~~~gi~IP~lCy~~~l~~~g~Cr~ClVev~~~~~~~~~sC~~~v~~gm~v~T~s~~v 80 (687)
T PRK09130 1 MVKLKVDGKEIEVPDGYTLLQACEAAGAEIPRFCYHERLSIAGNCRMCLVEVKGGPPKPVASCAMPVGEGMVIFTNTPMV 80 (687)
T ss_pred CeEEEECCEEEEeCCCCHHHHHHHHcCCCcCcccCCCCCCCCCCCCCCEEEECCCCCCcccccCCCCCCCCEEEeCCHHH
Confidence 799999999999999999999 7899999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCCCchhhhHHHhCCCCCcccccccCCCCCccchhhhhhccCCCCcccccceeecC
Q psy11935 707 RRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFTDIDFSGKSGTYTRVTRQRSWGLIPSRVFLQSINRH 786 (1334)
Q Consensus 707 ~~~r~~~~~~ll~~hp~~C~~c~~~g~c~lq~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~lc~~~~v~~~ 786 (1334)
+++|+++|||||+|||+|||+|||+|+|+|||+++.||+..+||.+ .+| .++++
T Consensus 81 ~~~r~~~le~ll~~Hp~dC~~C~~~g~C~Lq~~~~~~g~~~~r~~~----~~~----------------------~~~~~ 134 (687)
T PRK09130 81 KKAREGVMEFLLINHPLDCPICDQGGECDLQDQAMAYGVDTSRYHE----NKR----------------------AVEDK 134 (687)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHhCCCCCCCCc----ccc----------------------ccCcC
Confidence 9999999999999999999999999999999999999999999987 566 66677
Q ss_pred CCcccccccccCCCCcEEEcCCHHHHHHHHHHHHHHhhCCCCCCcccccCCccchhhhhcccCccccccCCCCCceeccc
Q psy11935 787 WIGPVAACAMPVMKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGNDLGTTGRGSDMQVGTY 866 (1334)
Q Consensus 787 ~~~~~~aC~~~v~~gm~i~t~s~~~r~~r~~~~~~ll~~h~~~C~~C~~~g~c~~~~~e~~g~~~~~~~~rg~~~~i~~~ 866 (1334)
..+|+ |.+ +++|| |+|+|| ||||.||+|+.+|++.+||.++.|+++
T Consensus 135 ~~~p~------------i~~--~~~rC--------------I~C~rC------vr~c~ev~g~~~l~~~~rg~~~~i~~~ 180 (687)
T PRK09130 135 YMGPL------------VKT--VMTRC--------------IHCTRC------VRFATEVAGVPELGAIGRGEDMEITTY 180 (687)
T ss_pred CCCCc------------EEE--ecccC--------------CcccHH------HHHHHhhcCCceEEeeecCCCCEEccC
Confidence 77899 999 99999 999999 999999999999999999999999999
Q ss_pred cccccccccccccccccccccccccCCcccCCCCcceeeeeecccCCCCCceEEEeeCCEEEEecCCCCCCCCccccccc
Q psy11935 867 VEKLFLSELSGNVIDLCPVGALTSKPYSFTARPWETRKTESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADK 946 (1334)
Q Consensus 867 ~~~~~~~~~cg~cv~~CpvGAl~~k~~~~~~r~we~~~~~s~c~~C~~gC~i~v~v~~g~v~ri~p~~~~~vn~g~lC~k 946 (1334)
.+.++.|++||+||++|||||||+|+|.|++||||+++++|+|++|++||+|.|++++|+|+||.|++++++|+||||+|
T Consensus 181 ~~~~~~~~~~G~cv~~CPvgAl~~k~~~~~~r~w~l~~~~sic~~c~vGC~i~v~~r~~~V~ri~pr~n~~vN~g~iC~K 260 (687)
T PRK09130 181 LEQALTSELSGNVIDLCPVGALTSKPYAFTARPWELKKTESIDVMDAVGSNIRVDTRGREVMRILPRVNEEVNEEWISDK 260 (687)
T ss_pred CCCCccccccccHHhhCCCccccccccccccCcceeeeccccCCCCCCCCCeEEEEeCCEEEEEeCCCCCCCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccCCceEecCCCCeeecCHHHHHHHHHHHhcc---CCEEEEeCCcCCHHHHHHHHHHHHHhCCCccccC
Q psy11935 947 GRFAYDGLKRQRLLTPFVRNCDGQLVATEWEDALIAVAQKLQT---SEVAGVVGSLADAEAMVALKDLLNKLGSEDLYTE 1023 (1334)
Q Consensus 947 gr~~~~~l~~~Rl~~PliR~~~g~~~~iSWdeAl~~ia~~L~~---~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~ 1023 (1334)
|||+|++++++||++||+|. +|+|+++||||||+.||++|++ +++++++|+..++|+++++++|++.+|++|+++.
T Consensus 261 gRf~~d~l~~~RL~~PliR~-~G~~~~iSWdEAl~~iA~kL~~~~~~~ia~i~g~~~~~E~~~~lkkl~~~lGs~nid~~ 339 (687)
T PRK09130 261 TRFSWDGLKRQRLDRPYVRK-NGKLVPASWDEAFAAIAAKIKGTPGEKIAAIAGDLADVESMFALKDLMQKLGSSNLDCR 339 (687)
T ss_pred cccccccccccccCCccEec-CCceeecCHHHHHHHHHHHHHhcCCCeEEEEECCCCCHHHHHHHHHHHHHcCCCccccc
Confidence 99999999999999999998 4999999999999999999998 7899999999999999999999999999998865
Q ss_pred CCCCcchhhhhhhhhccCCCCcccccccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCCCCccccccCCCcH
Q psy11935 1024 YAFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESA 1103 (1334)
Q Consensus 1024 ~~~~~~~~~~~~~~~~~~~~~~~die~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~~~t~~~a~~Gtd~ 1103 (1334)
.+... .....+..|.++.++.||++||+||+||+||++++|+++.|+|+++++++++|++|||+.+.||.+++||+++
T Consensus 340 ~~~~~--~~~~~~~~~~~~~si~dIe~AD~IlliG~Np~~eaPvl~~rirka~~~g~~kIivIdpr~~~t~~~~~lg~~~ 417 (687)
T PRK09130 340 QDGAK--LDPSLRASYLFNTTIAGIEEADAILLIGANPRFEAPVLNARIRKRWRAGGFKIAVIGEQADLTYPYEYLGAGP 417 (687)
T ss_pred cchhh--hhhhhhccCCCCCCHHHHHhCCEEEEEccCcccccHHHHHHHHHHHHcCCCeEEEEcCccccCccccccCCCH
Confidence 42211 1111234456678999999999999999999999999999999998655579999999999999999999999
Q ss_pred HHHHHHHhcHHHHHHHHhcCCCcEEEEcCCc---ccHHHHHHHHHHHHHhhcCCCCCCCCCcccccchhhhhhhhhhhcC
Q psy11935 1104 DLIKQLASGSHPFSKKLSAAKKPLIVVGADI---SDGAAVLALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAALDIG 1180 (1334)
Q Consensus 1104 a~l~~l~~g~~~~A~~l~~a~~~~ii~G~~~---~~g~~~~~al~~l~~~~g~~Gg~~~~~~~~~~l~~~~n~~G~~~~g 1180 (1334)
+++.+++.|.++||+.|+++++|+|++|.|+ .+|..++.++..|+..+|..| .+|+|+++++..+|.+|++++|
T Consensus 418 ~~l~~l~~g~~~~a~~l~~Ak~~~Ii~G~g~~~~~~g~~~~~ai~~La~~~G~~~---~~~~G~~~L~~~an~~ga~dlG 494 (687)
T PRK09130 418 DTLADLASGKHEFADVLKAAKRPMIIVGQGALARADGAAVLALAAKLAEKVGAVR---DGWNGFNVLHTAASRVGGLDLG 494 (687)
T ss_pred HHHHHHHHhHHHHHHHHhcCCCcEEEECCcccccccHHHHHHHHHHHHHHhCCcc---CCCCCeEecCCchHHHHHHHhc
Confidence 9999999999999999999999999999998 788889999999998887654 3578899999999999999999
Q ss_pred CCcch------hhHhcCCCcEEEEECCChhhhHHhhcCCCceEEEEcCCCChhhccccEEecCCCCCCCCcccccCCCce
Q psy11935 1181 YKPGT------SAIREKPPKVLFLLGADEGSISRDDVGKDCFIIYQGHHGDHGASIADAILPGAAYTEKQSTYVNTEGRA 1254 (1334)
Q Consensus 1181 ~~pg~------~~i~~g~ik~l~~~g~np~~~~~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~Gt~~n~egrv 1254 (1334)
+.|+. +.+..|+++++|++|+||+.... .+.+|+||+|+|+|+|+.+||||||+++|+|++|+|+|++||+
T Consensus 495 ~~p~~~g~~~~~ll~~g~ik~l~llgadp~~~~~---~~~~fvV~qd~~~t~ta~~ADVVLP~a~~~Ek~Gt~~n~egrv 571 (687)
T PRK09130 495 FVPGEGGKDAAEMLESGALDVLYLLGADEIDISK---GKSAFVIYQGHHGDRGAHRADVILPGAAYTEKSGTYVNTEGRV 571 (687)
T ss_pred CCCCcccccHHHHHhCCCcCEEEEecCChhhccc---ccCCEEEEecccCCccHhhCCEEEcCCCccccCCeEECCCCce
Confidence 87642 33447899999999999964321 2347999999999999999999999999999999999999999
Q ss_pred EEeccccCCCCCcccHHHHHHHHHHHhc-------------------CCCC------CC----------------Ccccc
Q psy11935 1255 QQTLTAVTPPGLAREDWKIIRALSEGVS-------------------SNLS------SE----------------PVDVK 1293 (1334)
Q Consensus 1255 q~~~~av~P~gear~dw~Il~~La~~lg-------------------~~~~------~~----------------~~~~~ 1293 (1334)
|.++++++|||++|+||+||++||++|| |.+. .. ...+.
T Consensus 572 q~~~~av~p~gear~dw~Il~~La~~lg~~~~~~~~~~l~~~l~~~~p~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (687)
T PRK09130 572 QLANRAVFPPGEAKEDWAILRALSDVLGKTLPYDSLAQLRAKLAAAYPHFAAIDQITPSKDAKDLAALASKKGKLSKAPF 651 (687)
T ss_pred EEeccccCCCcccchHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCccccCccccCcccchhhhhhhhccccccccccc
Confidence 9999999999999999999999999999 1111 00 00012
Q ss_pred ccccccccccchhhhchHHHHHhHHHHHhh
Q psy11935 1294 QKNLEDYYMTDPISRASGTMAKCIQAVHKQ 1323 (1334)
Q Consensus 1294 ~~~~~~~y~td~i~r~s~~m~~~~~~~~~~ 1323 (1334)
...+.||||||+|||+|++||+|++++...
T Consensus 652 ~~~~~~~y~t~~i~r~s~~m~~~~~~~~~~ 681 (687)
T PRK09130 652 TSPVKDFYLTNPIARASATMAECSALASGR 681 (687)
T ss_pred ccccccceeccHHHHhhHHHHHHHHHHHhc
Confidence 245689999999999999999999987544
No 3
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=100.00 E-value=8.9e-112 Score=976.95 Aligned_cols=556 Identities=27% Similarity=0.392 Sum_probs=502.8
Q ss_pred CCcEEEEECCEEEEeCCCCcchh----------------------------------hhhhhcCCCCCCCEEEcCCHHHH
Q psy11935 662 NEKFEVFIDDKKVMVDPGTTVLQ----------------------------------PVAACAMPVMKGWRVKTNSEMTR 707 (1334)
Q Consensus 662 ~~~~~~~idg~~~~v~~g~til~----------------------------------~~~ac~~~~~~gm~v~t~s~~~~ 707 (1334)
..||+|+|||++++|++|+|||+ +++||+|||.+||+|.|+|++++
T Consensus 3 ~~~i~vtidg~~~~v~~G~tiL~a~~~~gI~iP~iCy~~~l~pi~sCd~ClVEidG~l~rsCsT~v~dGm~v~t~s~rvk 82 (978)
T COG3383 3 EKMITVTIDGRSIEVEEGTTILRAANRNGIEIPHICYHESLGPIGSCDTCLVEIDGKLVRSCSTPVEDGMVVRTNSERVK 82 (978)
T ss_pred ceeEEEEECCeEEecCCChHHHHHHHhcCCcccceeccCCCCcccccceEEEEecCceeccccccccCCcEEecccHHHH
Confidence 46899999999999999999999 89999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCC-CCCchhhhHHHhCCCCCcccccccCCCCCccchhhhhhccCCCCcccccceeecC
Q psy11935 708 RAREGVMEFLLVNHPLDCPICDQG-GECDLQDQSMAFGSDRSRFTDIDFSGKSGTYTRVTRQRSWGLIPSRVFLQSINRH 786 (1334)
Q Consensus 708 ~~r~~~~~~ll~~hp~~C~~c~~~-g~c~lq~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~lc~~~~v~~~ 786 (1334)
++|+.+|++||.|||++|++||.+ |+|+||++++.+|....+|... +|...| +.+
T Consensus 83 ~~r~~~md~~l~nH~LyC~vCd~nnGdCelh~~~~~~gl~~q~y~y~---~k~~~~---------------------~~D 138 (978)
T COG3383 83 EARREAMDRILSNHPLYCTVCDNNNGDCELHNMVMALGLTEQRYPYE---EKNPPY---------------------PKD 138 (978)
T ss_pred HHHHHHHHHHHhcCCcCccccCCCCCCchHHHHHHHhCCCccccCcc---ccCCCC---------------------Ccc
Confidence 999999999999999999999998 9999999999999999998752 332222 235
Q ss_pred CCcccccccccCCCCcEEEcCCHHHHHHHHHHHHHHhhCCCCCCcccccCCccchhhhhcccCccccccCCCCCceeccc
Q psy11935 787 WIGPVAACAMPVMKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGNDLGTTGRGSDMQVGTY 866 (1334)
Q Consensus 787 ~~~~~~aC~~~v~~gm~i~t~s~~~r~~r~~~~~~ll~~h~~~C~~C~~~g~c~~~~~e~~g~~~~~~~~rg~~~~i~~~ 866 (1334)
..+|+ ++. +.++| |.|+|| |++|.+++|..+|++.+||.+..+..+
T Consensus 139 es~Pf------------y~y--dp~qC--------------IlCgRC------VeaCqevqv~eaL~i~w~~~~pRV~wd 184 (978)
T COG3383 139 ESNPF------------YIY--DPNQC--------------ILCGRC------VEACQEVQVNEALTIDWRGEDPRVIWD 184 (978)
T ss_pred cCCCe------------EEe--cchhe--------------eehhHH------HHHHHhhhceeEEEeecccCCcceecC
Confidence 56788 888 88999 999999 999999999999999999999988877
Q ss_pred ccccc---ccccccccccccccccccccCCcccCC---------------------CCc-----------------ceee
Q psy11935 867 VEKLF---LSELSGNVIDLCPVGALTSKPYSFTAR---------------------PWE-----------------TRKT 905 (1334)
Q Consensus 867 ~~~~~---~~~~cg~cv~~CpvGAl~~k~~~~~~r---------------------~we-----------------~~~~ 905 (1334)
.+.++ .|++||+||.||||+||++|++.+.++ ||. ++++
T Consensus 185 ~~~~i~~SSCVsCG~CvtVCP~nALmek~m~g~ag~~t~~~~~~~~~mid~~k~~eP~~~~~~ais~~e~~mr~~rikkt 264 (978)
T COG3383 185 NDVPINESSCVSCGACVTVCPVNALMEKSMLGEAGYLTGINEDTLEPMIDLVKKVEPEYGPIFAISEIEAAMRETRIKKT 264 (978)
T ss_pred CCCccccccccccCccceecchhhhhhhhhhccccccccccchhhhhhhhhhhccCCCcccchhhhhhhhhhhhhhhccc
Confidence 77555 499999999999999999999998888 998 8899
Q ss_pred eeecccCCCCCceEEEeeCCEEEEecCCCCCCCCccccccccccccccc-cccccCCceEecCCCCeeecCHHHHHHHHH
Q psy11935 906 ESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGL-KRQRLLTPFVRNCDGQLVATEWEDALIAVA 984 (1334)
Q Consensus 906 ~s~c~~C~~gC~i~v~v~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l-~~~Rl~~PliR~~~g~~~~iSWdeAl~~ia 984 (1334)
.|+|++||+||.+.|++++++|+||.|.+++|+|.+..|.||||+|+++ +++||+.||||.+ |.|+++|||||++.+|
T Consensus 265 kTvC~yCGvGCsf~vwtkgreilkv~p~~e~paN~~~tCVKGkFgwdfvns~dRit~PlIR~~-~~f~evsWeEAl~~vA 343 (978)
T COG3383 265 KTVCTYCGVGCSFEVWTKGREILKVQPDPEGPANRISTCVKGKFGWDFVNSRDRITKPLIREG-DRFREVSWEEALDLVA 343 (978)
T ss_pred ceeccccCCceeEEEEecCceEEEeccCCCCCCCccceeeeceecccccCChhHhcccccccC-CceeeeeHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 5999999999985 9999999999999999
Q ss_pred HHhcc-------CCEEEEeCCcCCHHHHHHHHHHHH-HhCCCccccCCCCCcchhhhhhhhhcc---CCCCcccccccCe
Q psy11935 985 QKLQT-------SEVAGVVGSLADAEAMVALKDLLN-KLGSEDLYTEYAFPLEGAGTDLRANYL---LNNKIAGAEEADL 1053 (1334)
Q Consensus 985 ~~L~~-------~~i~~~~g~~~~~e~~~~~~~l~~-~lGs~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~die~ad~ 1053 (1334)
++|++ +++++++|+.+++|+.|++++|++ .||++|+|+.+.+|..++..++..++| ...++.||+.||+
T Consensus 344 ~rl~~ik~~yg~dsigfI~Ssk~TNEE~Yl~QKLaR~v~gtNNVDncsR~CqsPa~~gL~rTvG~g~dsgsi~dve~ad~ 423 (978)
T COG3383 344 SRLREIKEKYGGDSIGFIASSKCTNEENYLMQKLARQVFGTNNVDNCSRYCQSPATDGLFRTVGSGADSGSIEDVEGADL 423 (978)
T ss_pred HHHHHHHHHhCccceeeeccCCCCcHHHHHHHHHHHHHhccCCcccchhhccCcccccchheeeccCCCCCHHHHhhCCe
Confidence 99995 899999999999999999999997 799999999999999988777776654 3568999999999
Q ss_pred EEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCCCCcccccc------CCCcHHHHHHHH-----------------
Q psy11935 1054 ILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEH------LGESADLIKQLA----------------- 1110 (1334)
Q Consensus 1054 Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~~~t~~~a~------~Gtd~a~l~~l~----------------- 1110 (1334)
||++|+||.++||++..|+++|.+-+|.||+|+|||.+..+..++ ||||.++|.+++
T Consensus 424 vliIG~N~te~HPV~asr~kra~k~~G~KliV~D~R~~emaerAdlf~~pkpGtd~a~l~AvakyiideGl~D~~Fi~er 503 (978)
T COG3383 424 VLIIGANPTEGHPVLASRLKRAHKLRGQKLIVIDPRKHEMAERADLFLHPKPGTDLAWLTAVAKYIIDEGLHDEAFIRER 503 (978)
T ss_pred EEEEcCCCCccCccHHHHHHHHHHhcCCeEEEeccchhHHHHhhhcccCCCCCccHHHHHHHHHHHHhCCcchHHHHHhh
Confidence 999999999999999999999987799999999999877665553 899999887764
Q ss_pred ---------------------------hcHHHHHHHHhcCCCcEEEEcCCc---ccHHHHHHHHH---HHHHhhcCCCCC
Q psy11935 1111 ---------------------------SGSHPFSKKLSAAKKPLIVVGADI---SDGAAVLALVQ---QLAAKVTCESDV 1157 (1334)
Q Consensus 1111 ---------------------------~g~~~~A~~l~~a~~~~ii~G~~~---~~g~~~~~al~---~l~~~~g~~Gg~ 1157 (1334)
+.+..+|++++.++..+|+||+|+ ..|.....+|. .++|++|+||
T Consensus 504 ~~~f~d~~~~l~~~tle~~E~~TGv~~e~l~~~A~~~~~a~~~ai~w~mGvTqh~~GsdTs~aisNLll~TGN~Grpg-- 581 (978)
T COG3383 504 VDWFEDYAKSLAPFTLEYAEKATGVPAEDLRKAAEMIAEAKSVAILWGMGVTQHSGGSDTSTAISNLLLLTGNYGRPG-- 581 (978)
T ss_pred cccHHHHHHHhhccCHHHHHhhcCCCHHHHHHHHHHHhccCceEEEEEccccccccCccHHHHHHHHHHHhcccCCCC--
Confidence 114568999999999999999999 44555555544 4567777776
Q ss_pred CCCCcccccchhhhhhhhhhhcCCCc----c--------------------------------hhhHhcCCCcEEEEECC
Q psy11935 1158 PCDWKVLNILQKAASQVAALDIGYKP----G--------------------------------TSAIREKPPKVLFLLGA 1201 (1334)
Q Consensus 1158 ~~~~~~~~~l~~~~n~~G~~~~g~~p----g--------------------------------~~~i~~g~ik~l~~~g~ 1201 (1334)
.|.+||++++|.+|++|||..| | ++++.+|+++++|++|.
T Consensus 582 ----~G~~PLRGhNNVQGa~DmGslP~~LPGyq~isdd~~R~kFE~~wGv~i~~ePGl~~~~Mlea~~~G~~~amYv~GE 657 (978)
T COG3383 582 ----AGAYPLRGHNNVQGACDMGSLPDVLPGYQPISDDAVRAKFEEAWGVKIPREPGLDNPEMLEAIEEGKLKAMYVVGE 657 (978)
T ss_pred ----CCcCcccccCccccccccccCcccCCCccccccHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHhcCceeEEEEecc
Confidence 4688999999999999998543 2 25677899999999999
Q ss_pred Chhh------hHHhhcCCCceEEEEcCCCChhhccccEEecCCCCCCCCcccccCCCceEEeccccCCCCCcccHHHHHH
Q psy11935 1202 DEGS------ISRDDVGKDCFIIYQGHHGDHGASIADAILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPGLAREDWKIIR 1275 (1334)
Q Consensus 1202 np~~------~~~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~Gt~~n~egrvq~~~~av~P~gear~dw~Il~ 1275 (1334)
||+. +++++|.++||+||||.|+++||.|||||||+++|+||+|||+|+|+|+|+++++++|+|++||||+|+.
T Consensus 658 d~~~sd~dt~~v~~aL~~ldflVVqD~FLteTA~yAdVvLPas~slEKdGTFtNtERRiQrlykvleP~gdsrpDW~Iiq 737 (978)
T COG3383 658 DPLLSDPDTNHVRAALEALDFLVVQDLFLTETANYADVVLPASASLEKDGTFTNTERRIQRLYKVLEPLGDSRPDWEIIQ 737 (978)
T ss_pred cceecCCChHHHHHHHhhcceEEeehhhhhcccccceEEeecCccccccCceechHHHHHHHHHHhccccCCCccHHHHH
Confidence 9954 4688999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q psy11935 1276 ALSEGVS 1282 (1334)
Q Consensus 1276 ~La~~lg 1282 (1334)
.+|++||
T Consensus 738 ~vA~~lG 744 (978)
T COG3383 738 EVANALG 744 (978)
T ss_pred HHHHHhc
Confidence 9999999
No 4
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=100.00 E-value=2e-103 Score=1007.41 Aligned_cols=549 Identities=32% Similarity=0.470 Sum_probs=472.8
Q ss_pred CCcEEEEECCEEEEeCCCCcchh------------------------------------hhhhhcCCCCCCCEEEcC--C
Q psy11935 662 NEKFEVFIDDKKVMVDPGTTVLQ------------------------------------PVAACAMPVMKGWRVKTN--S 703 (1334)
Q Consensus 662 ~~~~~~~idg~~~~v~~g~til~------------------------------------~~~ac~~~~~~gm~v~t~--s 703 (1334)
++||+|+|||++|+||+|+|||+ +++||+|||.+||+|.|+ |
T Consensus 2 ~~~v~~~idg~~~~~~~g~til~aa~~~gi~ip~~C~~~~l~~~g~Cr~C~Vev~g~~~~~~aC~t~v~~gm~V~t~~~s 81 (797)
T PRK07860 2 PDLVTLTIDGVEVSVPKGTLVIRAAELLGIQIPRFCDHPLLDPVGACRQCLVEVEGQRKPQASCTTTVTDGMVVKTQLTS 81 (797)
T ss_pred CceEEEEECCEEEEeCCCChHHHHHHHcCCCCCeecCCCCCCCCcccCccEEEECCCcccccccCCCCCCCcEEEeCCCC
Confidence 46999999999999999999999 688999999999999998 9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCchhhhHHHhCCCCCcccccccCCCCCccchhhhhhccCCCCccccccee
Q psy11935 704 EMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFTDIDFSGKSGTYTRVTRQRSWGLIPSRVFLQSI 783 (1334)
Q Consensus 704 ~~~~~~r~~~~~~ll~~hp~~C~~c~~~g~c~lq~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~lc~~~~v 783 (1334)
|+|+++|+.+|||||+|||+|||+||++|+|+|||+++.||+..+||.. .++ .+
T Consensus 82 ~~v~~~r~~~le~ll~~hp~dC~~C~~~g~C~Lq~~~~~~g~~~~~~~~----~~~----------------------~~ 135 (797)
T PRK07860 82 PVADKAQHGVMELLLINHPLDCPVCDKGGECPLQNQAMSNGRAESRFTD----VKR----------------------TF 135 (797)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHHhCCCCccCcc----ccc----------------------cC
Confidence 9999999999999999999999999999999999999999999999975 344 11
Q ss_pred ecC-CCcccccccccCCCCcEEEcCCHHHHHHHHHHHHHHhhCCCCCCcccccCCccchhhhhcccCccccccCCCCCce
Q psy11935 784 NRH-WIGPVAACAMPVMKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGNDLGTTGRGSDMQ 862 (1334)
Q Consensus 784 ~~~-~~~~~~aC~~~v~~gm~i~t~s~~~r~~r~~~~~~ll~~h~~~C~~C~~~g~c~~~~~e~~g~~~~~~~~rg~~~~ 862 (1334)
+.. +.+|. |.. +++|| |.|+|| ||+|+||+|..+|++.+||.++.
T Consensus 136 ~~~~~~~~~------------i~~--d~~rC--------------I~C~rC------vr~c~ev~g~~~l~~~~rg~~~~ 181 (797)
T PRK07860 136 PKPINISTQ------------VLL--DRERC--------------VLCARC------TRFSDQIAGDPFIDLQERGALQQ 181 (797)
T ss_pred CCCCCCCcc------------eee--ccccc--------------ccCcHH------HHHHHhhcCCcEEEeeecCCCCE
Confidence 111 22455 777 89999 999999 99999999999999999999999
Q ss_pred eccccccccccccccccccccccccccccCCcccCCCCcceeeeeecccCCCCCceEEEeeCCEEEEecCCCCCCCCccc
Q psy11935 863 VGTYVEKLFLSELSGNVIDLCPVGALTSKPYSFTARPWETRKTESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDINEEW 942 (1334)
Q Consensus 863 i~~~~~~~~~~~~cg~cv~~CpvGAl~~k~~~~~~r~we~~~~~s~c~~C~~gC~i~v~v~~g~v~ri~p~~~~~vn~g~ 942 (1334)
|+++.+.++.|++||+||++|||||||+|+|+|++|+|++++++|+|++|++||++.+++++|+|+|+.|.+++++|+||
T Consensus 182 i~~~~~~~~~~~~cG~cv~vCP~GAl~~k~~~~~~r~w~l~~~~SvC~~C~~GC~l~v~v~dg~ivrv~~~~~~~~N~G~ 261 (797)
T PRK07860 182 VGIYEGEPFQSYFSGNTVQICPVGALTGAAYRFRARPFDLVSTPSVCEHCASGCAQRTDHRRGKVLRRLAGDDPEVNEEW 261 (797)
T ss_pred EecCCCCCcCccccCCchhhCCcccccccccccccCcccceecceeCCCCCCCCCeEEEEcCCEEEEEecCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred cccccccccccc-cccccCCceEecCCCCeeecCHHHHHHHHHHHhcc--CCEEEEeCCcCCHHHHHHHHHHHH-HhCCC
Q psy11935 943 LADKGRFAYDGL-KRQRLLTPFVRNCDGQLVATEWEDALIAVAQKLQT--SEVAGVVGSLADAEAMVALKDLLN-KLGSE 1018 (1334)
Q Consensus 943 lC~kgr~~~~~l-~~~Rl~~PliR~~~g~~~~iSWdeAl~~ia~~L~~--~~i~~~~g~~~~~e~~~~~~~l~~-~lGs~ 1018 (1334)
+|+||||+++++ +|+||++||+|.++|+|++|||||||+.||++|++ +++++++|+..++|++|++++|++ .+|++
T Consensus 262 lC~KGr~~~~~~~~~dRL~~PliR~~~g~f~~iSWdEAld~ia~kL~~i~~~ia~~~s~~~t~Ee~y~~~kl~r~~lgt~ 341 (797)
T PRK07860 262 NCDKGRWAFTYATQPDRITTPLVRDEDGELEPASWSEALAVAARGLAAARGRVGVLVGGRLTVEDAYAYAKFARVALGTN 341 (797)
T ss_pred cChhhhhhhhhhccccccCCceEEcCCCceEEcCHHHHHHHHHHHHHhhhccEEEEeCCCCCHHHHHHHHHHHHHhcCCC
Confidence 999999999998 59999999999657899999999999999999998 789999999999999999999997 79999
Q ss_pred ccccCCCCCcchhhhhhh--hhc--cCCCCcccccccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCCCCcc
Q psy11935 1019 DLYTEYAFPLEGAGTDLR--ANY--LLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRY 1094 (1334)
Q Consensus 1019 ~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~die~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~~~t~ 1094 (1334)
|+++....+.. ...++. ..+ +.+.++.||++||+||+||+||.+++|+++.|++++++++|+|||||||+.+.++
T Consensus 342 nid~~~r~~~~-~~~~~~~~~~~g~~~~~~~~Die~ad~ill~G~N~~~~~P~~~~ri~~a~k~~GakiivIDPr~t~t~ 420 (797)
T PRK07860 342 DIDFRARPHSA-EEADFLAARVAGRGLGVTYADLEKAPAVLLVGFEPEEESPIVFLRLRKAARKHGLKVYSIAPFATRGL 420 (797)
T ss_pred ccccccccccc-hHHHHHHhhccCCCCCCCHHHHHhCCEEEEEeCChhhhhHHHHHHHHHHHHhCCCEEEEECCCCchhh
Confidence 99876544221 111111 111 2356899999999999999999999999999999987778999999999998753
Q ss_pred -cc------ccCCCcHHHHHHHHhcHHHHHHHHhcCCCcEEEEcCCcccHHHHHHHHHHHHHhhcCCCCCCCCCcccccc
Q psy11935 1095 -DY------EHLGESADLIKQLASGSHPFSKKLSAAKKPLIVVGADISDGAAVLALVQQLAAKVTCESDVPCDWKVLNIL 1167 (1334)
Q Consensus 1095 -~~------a~~Gtd~a~l~~l~~g~~~~A~~l~~a~~~~ii~G~~~~~g~~~~~al~~l~~~~g~~Gg~~~~~~~~~~l 1167 (1334)
.. ..||+|.+++.+++..+..+++.|+.+ ++++++|.++......+.++.+|+...|... ..+
T Consensus 421 a~~Ad~~l~irPGtD~all~al~~~i~~~a~~l~~~-~~~i~~g~~v~~~~~~~~a~~~la~~~g~~~---------~~~ 490 (797)
T PRK07860 421 EKMGGTLLRTAPGGEAAALDALATGAPDVAELLRTP-GAVILVGERLATVPGALSAAARLADATGARL---------AWV 490 (797)
T ss_pred hhhhhceeccCCCcHHHHHHHHHHHHHHHHHHHccC-CCEEEEchhhccChhHHHHHHHHHHHhCCcc---------ccc
Confidence 22 249999999999999888899999876 5888999888322223566777776665410 011
Q ss_pred hhhhhhhhhhhcCC-------------------------------Ccc------hhhHhcCCCcEEEEECCChhh-----
Q psy11935 1168 QKAASQVAALDIGY-------------------------------KPG------TSAIREKPPKVLFLLGADEGS----- 1205 (1334)
Q Consensus 1168 ~~~~n~~G~~~~g~-------------------------------~pg------~~~i~~g~ik~l~~~g~np~~----- 1205 (1334)
+..+|.+|+.++|. .|| ++++..|++|+||++|.||..
T Consensus 491 ~~~~n~~G~~~~G~~~~~lpG~~~~~~~~~~~~~~~~w~~~~~p~~~G~~~~ei~~~~~~G~Ikal~v~g~np~s~p~~~ 570 (797)
T PRK07860 491 PRRAGERGALEAGALPTLLPGGRPVADPAARAEVAAAWGVDELPAAPGRDTAGILAAAAAGELGALLVGGVEPADLPDPA 570 (797)
T ss_pred cchhhhhhhHhhcCCCCcCccccccCCHHHHHHHHHHhCCCcCCCCCCcCHHHHHHHHhcCCCcEEEEeCcChhhCCCHH
Confidence 11122333333321 233 245568999999999999953
Q ss_pred hHHhhcCCCceEEEEcCCCChhhccccEEecCCCCCCCCcccccCCCceEEeccccCCCCCcccHHHHHHHHHHHhc
Q psy11935 1206 ISRDDVGKDCFIIYQGHHGDHGASIADAILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPGLAREDWKIIRALSEGVS 1282 (1334)
Q Consensus 1206 ~~~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~Gt~~n~egrvq~~~~av~P~gear~dw~Il~~La~~lg 1282 (1334)
..+++|++++|+|++|+|+|+|+.+||||||+++|+|++|||+|+|||+|+++++++| |++|+||+||..||++||
T Consensus 571 ~v~~aL~~ldflVv~D~f~teTa~~ADVVLPaa~~~Ek~Gt~tN~e~rvq~~~kav~p-~~ar~Dw~Il~~La~~lg 646 (797)
T PRK07860 571 AALAALDAAGFVVSLELRHSAVTERADVVLPVAPVAEKAGTFLNWEGRLRPFEAALRT-TGALSDLRVLDALADEMG 646 (797)
T ss_pred HHHHHHhcCCeEEEecccCchhHhhCCEEeecCcccccCCceEccCCceEeeccCCCC-CCCchHHHHHHHHHHHhC
Confidence 2478899999999999999999999999999999999999999999999999999996 689999999999999998
No 5
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=100.00 E-value=2.6e-103 Score=985.83 Aligned_cols=547 Identities=51% Similarity=0.837 Sum_probs=486.8
Q ss_pred EEECCEEEEeCCCCcchh-------------------------------------hhhhhcCCCCCCCEEEcCCHHHHHH
Q psy11935 667 VFIDDKKVMVDPGTTVLQ-------------------------------------PVAACAMPVMKGWRVKTNSEMTRRA 709 (1334)
Q Consensus 667 ~~idg~~~~v~~g~til~-------------------------------------~~~ac~~~~~~gm~v~t~s~~~~~~ 709 (1334)
|+|||++|+||+|+|||+ +++||+|||.+||+|.|+||+|+++
T Consensus 1 ~~idg~~~~~~~g~~il~a~~~~gi~ip~~C~~~~l~~~g~Cr~C~v~v~g~~~~~~~aC~~~~~~gm~v~t~~~~~~~~ 80 (603)
T TIGR01973 1 IFIDGKELEVPKGTTVLQACLSAGIEIPRFCYHEKLSIAGNCRMCLVEVEKFPDKPVASCATPVTDGMKISTNSEKVKKA 80 (603)
T ss_pred CEECCEEEEeCCCCHHHHHHHHcCCCccccCCCCCCCCCCccccCEEEECCCCCCcccccCCCCCCCCEEEeCCHHHHHH
Confidence 689999999999999999 3789999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCchhhhHHHhCCCCCcccccccCCCCCccchhhhhhccCCCCcccccceeecCCCc
Q psy11935 710 REGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFTDIDFSGKSGTYTRVTRQRSWGLIPSRVFLQSINRHWIG 789 (1334)
Q Consensus 710 r~~~~~~ll~~hp~~C~~c~~~g~c~lq~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~lc~~~~v~~~~~~ 789 (1334)
|+.+|||||.|||+|||+||++|+|+|||+++.||+...||.. .+| .++++..+
T Consensus 81 r~~~~e~ll~~h~~dC~~C~~~g~C~Lq~~~~~~g~~~~~~~~----~~~----------------------~~~~~~~~ 134 (603)
T TIGR01973 81 REGVMEFLLINHPLDCPICDQGGECDLQDQAVMYGSDRSRFRE----KKR----------------------TVENKYLG 134 (603)
T ss_pred HHHHHHHHHhcCCCCCCcCCCCCCChHHHHHHHhCCCCCCCCc----ccc----------------------cCCCCCCC
Confidence 9999999999999999999999999999999999999999976 344 33444567
Q ss_pred ccccccccCCCCcEEEcCCHHHHHHHHHHHHHHhhCCCCCCcccccCCccchhhhhcccCccccccCCCCCceecccccc
Q psy11935 790 PVAACAMPVMKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGNDLGTTGRGSDMQVGTYVEK 869 (1334)
Q Consensus 790 ~~~aC~~~v~~gm~i~t~s~~~r~~r~~~~~~ll~~h~~~C~~C~~~g~c~~~~~e~~g~~~~~~~~rg~~~~i~~~~~~ 869 (1334)
|+ |.. +++|| |.|+|| ||+|+|++|..+|+|.+||.++.|+++.+.
T Consensus 135 p~------------i~~--d~~rC--------------I~C~rC------vr~c~e~~g~~~l~~~~rg~~~~i~~~~~~ 180 (603)
T TIGR01973 135 PL------------IKT--EMTRC--------------IHCTRC------VRFANEVAGVEDLGVIGRGNNVEIGTYEGK 180 (603)
T ss_pred CC------------eEe--cCCcC--------------ccccHH------HHHHHHhhCCceEEEeccCCCCEEecCCCC
Confidence 88 888 99999 999999 999999999999999999999999999988
Q ss_pred ccccccccccccccccccccccCCcccCCCCcceeeeeecccCCCCCceEEEeeCCEEEEecCCCCCCCCcccccccccc
Q psy11935 870 LFLSELSGNVIDLCPVGALTSKPYSFTARPWETRKTESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRF 949 (1334)
Q Consensus 870 ~~~~~~cg~cv~~CpvGAl~~k~~~~~~r~we~~~~~s~c~~C~~gC~i~v~v~~g~v~ri~p~~~~~vn~g~lC~kgr~ 949 (1334)
++.|.+||+||++|||||||+|++.|++|||+++.++|+|++|+.||++.+++++|+|+||.|++++|+|.||+|+||||
T Consensus 181 ~~~~~~cg~cv~vCP~GAl~~k~~~~~~r~w~~~~~~t~C~~C~~gC~i~v~v~dg~i~rv~~~~~~p~n~g~lC~kG~~ 260 (603)
T TIGR01973 181 TLESELSGNLIDICPVGALTSKPYAFKARPWELKSTPSICVHDSVGCNIRVDERNGEIMRILPRENDEINEEWLCDKGRF 260 (603)
T ss_pred CCCCcccCChHhhCCcccccccccccccccccceeccccCCCcCCCCceeEEeECCEEEEEECCCCCCCCccccCHhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc-cccccCCceEecCCCCeeecCHHHHHHHHHHHhcc-CCEEEEeCCcCCHHHHHHHHHHHHHhCCCccccCCCCC
Q psy11935 950 AYDGL-KRQRLLTPFVRNCDGQLVATEWEDALIAVAQKLQT-SEVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFP 1027 (1334)
Q Consensus 950 ~~~~l-~~~Rl~~PliR~~~g~~~~iSWdeAl~~ia~~L~~-~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~ 1027 (1334)
+++++ +|+||++||+|.++|+|++|||||||+.||++|++ +++++++|+..++|..+++++|++.+|++|+++....+
T Consensus 261 ~~~~~~~~dRl~~Pl~R~~~g~~~~isWdeAl~~ia~kL~~i~~va~~~~~~~~~e~~~~~~~~~~~lGt~~~~~~~~~~ 340 (603)
T TIGR01973 261 GYDGLNRQDRLTKPLLRNQEGNLLEVSWAEALAIAAEKLKASSRIGGIAGPRSSLEELFALKKLVRKLGSENFDLRIRNY 340 (603)
T ss_pred hhhhhcCccccCCceEecCCCceEEcCHHHHHHHHHHHHhccCcEEEEeCCCCCHHHHHHHHHHHHHhCCCccccccccc
Confidence 99999 59999999999446999999999999999999999 89999999999999999999999999999888765433
Q ss_pred cchhhhhhhhhccCCCCcccccccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCCCCcccccc------CCC
Q psy11935 1028 LEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEH------LGE 1101 (1334)
Q Consensus 1028 ~~~~~~~~~~~~~~~~~~~die~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~~~t~~~a~------~Gt 1101 (1334)
...... ....+.++.++.|+++||+||+||+||.+++|+++.+++++.+++|+|||+|||+.+.++..++ ||+
T Consensus 341 ~~~~~~-~~~~~~~g~~~~di~~ad~il~~G~N~~~s~p~~~~~i~~a~~~ggaklividpr~s~ta~~Ad~~l~i~Pgt 419 (603)
T TIGR01973 341 EFESAD-LRANYLFNTTLADIEEADLVLLVGADLRQEAPLLNLRLRKAVKKGGAKVALIGIEKWNLTYPANTNLVFHPGL 419 (603)
T ss_pred ccccch-hhcccccCCCHHHHHhCCEEEEEccCchhhhHHHHHHHHHHHhcCCcEEEEECCccccchhhhccceeecCCc
Confidence 211111 1112334578999999999999999999999999999999886666999999999999987764 999
Q ss_pred cHHHHHHHHhcHH-HHHHHHhcCCCcEEEEcCCc---ccHHHHHHHHHHHHHhhcCCCCCCCCCcccccchhhhhhhhhh
Q psy11935 1102 SADLIKQLASGSH-PFSKKLSAAKKPLIVVGADI---SDGAAVLALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAAL 1177 (1334)
Q Consensus 1102 d~a~l~~l~~g~~-~~A~~l~~a~~~~ii~G~~~---~~g~~~~~al~~l~~~~g~~Gg~~~~~~~~~~l~~~~n~~G~~ 1177 (1334)
|.+++.+++.|.. .+|+.|+++++++|++|.++ .+|..+++++.+|+..+|+.|.. ++|+++++..+|.+|+.
T Consensus 420 d~all~~l~~~~~~~~A~~l~~ak~~~ii~g~g~~~~~~g~~~~~a~~~L~~l~G~~~~~---g~g~~~~~~~~n~~g~~ 496 (603)
T TIGR01973 420 SPKKLDDIASGAHSDIAAALKAAKKPLIIVGDSAYSHLDGAALISAAANIAKVIKVRRKE---WNGLNILSSGANSVGLL 496 (603)
T ss_pred cHHHHHHHHhcccHHHHHHHhhCCCcEEEEechhhcCCCHHHHHHHHHHHHHHhCCccCC---CceEEEeccchHHHHHH
Confidence 9999999986655 39999999999999999887 67788888877777766654321 13456677778889999
Q ss_pred hcCCCc-c-hhhHhcCCCcEEEEECCChhh-----hHHhhcCCCceEEEEcCCCChhhccccEEecCCCCCCCCcccccC
Q psy11935 1178 DIGYKP-G-TSAIREKPPKVLFLLGADEGS-----ISRDDVGKDCFIIYQGHHGDHGASIADAILPGAAYTEKQSTYVNT 1250 (1334)
Q Consensus 1178 ~~g~~p-g-~~~i~~g~ik~l~~~g~np~~-----~~~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~Gt~~n~ 1250 (1334)
++|..| + ...+..|++|++|++|.||+. ...+++.+++|+|++|+|+|+|+.+||||||+++|+|++|+|+|.
T Consensus 497 ~~g~~~~~l~~~i~~g~ikal~v~g~Np~~~~~~~~~~~~~~~~~f~Vv~d~f~teTa~~ADvVLPaa~~~Ek~G~~~n~ 576 (603)
T TIGR01973 497 DLGGESTGLDAALNLGAADALFLLGADLERALDKTARDALSKADAFVIYQGHHGTETAEKADVILPGAAFTEKSGTYVNL 576 (603)
T ss_pred HhcCCCccchhhhhcCCCCEEEEeccCcccCChHHHHHHHHhcCCEEEEecCcCCccHhhCCEEEcCCCccCCCceEECC
Confidence 988766 3 345677999999999999953 234567889999999999999999999999999999999999999
Q ss_pred CCceEEeccccCCCCCcccHHHHHHHH
Q psy11935 1251 EGRAQQTLTAVTPPGLAREDWKIIRAL 1277 (1334)
Q Consensus 1251 egrvq~~~~av~P~gear~dw~Il~~L 1277 (1334)
+|++|.++|+++|+|++|+||+||.+|
T Consensus 577 ~g~~~~~~~~v~p~ge~r~d~~il~~L 603 (603)
T TIGR01973 577 EGRAQRFEQAVKPPGEAREDWRILRAL 603 (603)
T ss_pred CCcCEeeccccCCCccchHHHHHHHhC
Confidence 999999999999999999999999875
No 6
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=100.00 E-value=3.2e-101 Score=994.63 Aligned_cols=548 Identities=37% Similarity=0.594 Sum_probs=482.5
Q ss_pred cEEEEECCEEEEeCCCCcchh------------------------------------hhhhhcCCCCCCCEEEcCCHHHH
Q psy11935 664 KFEVFIDDKKVMVDPGTTVLQ------------------------------------PVAACAMPVMKGWRVKTNSEMTR 707 (1334)
Q Consensus 664 ~~~~~idg~~~~v~~g~til~------------------------------------~~~ac~~~~~~gm~v~t~s~~~~ 707 (1334)
||+|+|||++|+||+|+|||+ +++||.|||.+||+|.|+||+++
T Consensus 1 m~~~~idg~~~~~~~g~~il~a~~~~g~~ip~~c~~~~~~~~~~C~~C~v~v~~~~~~~~aC~~~~~~gm~v~t~~~~~~ 80 (776)
T PRK09129 1 MVEIEIDGKKVEVPEGSMVIEAADKAGIYIPRFCYHKKLSIAANCRMCLVEVEKAPKPLPACATPVTDGMKVFTRSEKAL 80 (776)
T ss_pred CeEEEECCEEEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCCCcceeEEEECCCCCcCcccCCCCCCCCEEEcCCHHHH
Confidence 799999999999999999999 58899999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCCCCCchhhhHHHhCCCCCcccccccCCCCCccchhhhhhccCCCCcccccceeecCC
Q psy11935 708 RAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFTDIDFSGKSGTYTRVTRQRSWGLIPSRVFLQSINRHW 787 (1334)
Q Consensus 708 ~~r~~~~~~ll~~hp~~C~~c~~~g~c~lq~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~lc~~~~v~~~~ 787 (1334)
++|+.+|||||.|||+|||+||++|+|+|||+++.||+..+||.+ .++ .++++.
T Consensus 81 ~~r~~~l~~ll~~h~~~C~~c~~~g~C~Lq~~a~~~g~~~~~~~~----~~~----------------------~~~~~~ 134 (776)
T PRK09129 81 KAQKSVMEFLLINHPLDCPICDQGGECQLQDLAVGYGRSTSRYTE----EKR----------------------VVFDKD 134 (776)
T ss_pred HHHHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHHhCCCCCcccc----ccc----------------------cCCccC
Confidence 999999999999999999999999999999999999999999976 344 333345
Q ss_pred CcccccccccCCCCcEEEcCCHHHHHHHHHHHHHHhhCCCCCCcccccCCccchhhhhcccCccccccCCCCCceecccc
Q psy11935 788 IGPVAACAMPVMKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGNDLGTTGRGSDMQVGTYV 867 (1334)
Q Consensus 788 ~~~~~aC~~~v~~gm~i~t~s~~~r~~r~~~~~~ll~~h~~~C~~C~~~g~c~~~~~e~~g~~~~~~~~rg~~~~i~~~~ 867 (1334)
.+|+ |.. +++|| |.|+|| ||+|.||+|..+|+|.+||.++.|+++.
T Consensus 135 ~~p~------------i~~--d~~rC--------------i~C~rC------vr~c~ev~g~~~l~~~~rg~~~~i~~~~ 180 (776)
T PRK09129 135 LGPL------------IST--EMTRC--------------IHCTRC------VRFGQEIAGVMELGMMGRGEHSEITTYV 180 (776)
T ss_pred CCcc------------eee--ccccc--------------ccCcHH------HHHHHHhcCCceeeeeccCCCCEEcCCC
Confidence 5788 888 89999 999999 9999999999999999999999999999
Q ss_pred ccccccccccccccccccccccccCCcccCCCCcceeeeeecccCCCCCceEEEeeCCEEEEecCCCCCCCCcccccccc
Q psy11935 868 EKLFLSELSGNVIDLCPVGALTSKPYSFTARPWETRKTESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKG 947 (1334)
Q Consensus 868 ~~~~~~~~cg~cv~~CpvGAl~~k~~~~~~r~we~~~~~s~c~~C~~gC~i~v~v~~g~v~ri~p~~~~~vn~g~lC~kg 947 (1334)
+.+++|.+||+||++||||||++|+|+|++|+|+++.++|+|++|++||+|.+++++|+|+||.|++++|+|.|++|+||
T Consensus 181 ~~~~~~~~cg~cv~~CP~GAl~~k~~~~~~r~w~~~~~~t~C~~C~~gC~i~v~v~~g~i~rv~g~~~~p~n~G~lC~kG 260 (776)
T PRK09129 181 GKTVDSELSGNMIDLCPVGALTSKPFRYSARTWELSRRKSVSPHDSLGSNLVVHVKNNRVMRVVPRENEAVNECWISDRD 260 (776)
T ss_pred CCCccCcccCCchhhCCccccccccccccCCCcccccCCccCCCCCCCCCeEEEEECCEEEEeecCCCCCCCccccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccc-cccccCCceEecCCCCeeecCHHHHHHHHHHHhcc-------CCEEEEeCCcCCHHHHHHHHHHHHHhCCCc
Q psy11935 948 RFAYDGL-KRQRLLTPFVRNCDGQLVATEWEDALIAVAQKLQT-------SEVAGVVGSLADAEAMVALKDLLNKLGSED 1019 (1334)
Q Consensus 948 r~~~~~l-~~~Rl~~PliR~~~g~~~~iSWdeAl~~ia~~L~~-------~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~ 1019 (1334)
||+++.+ +|+||++||+|. +|+|+++||||||+.+|++|++ +++++++|+..++|..+++++|++.+|++|
T Consensus 261 ~~~~~~l~~pdRl~~Pl~R~-~g~~~~iSWdeAl~~ia~~L~~i~~~~G~~~i~~~~s~~~t~e~~~~~~~f~~~~Gt~n 339 (776)
T PRK09129 261 RFSYEGLNSEDRLTKPMIKQ-GGQWKEVDWETALEYVAEGLKGIIEDHGADQIGALASPHSTLEELYLLQKLARGLGSGN 339 (776)
T ss_pred cccccccccccccCCCeEec-CCceEEcCHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCCHHHHHHHHHHHHHhCCCc
Confidence 9999998 599999999997 5999999999999999999986 678888899899999999999999999998
Q ss_pred cccCCCCCcchhhhhhhhhccCCCCcccccccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCCCCccccccC
Q psy11935 1020 LYTEYAFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHL 1099 (1334)
Q Consensus 1020 ~~~~~~~~~~~~~~~~~~~~~~~~~~~die~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~~~t~~~a~~ 1099 (1334)
+++....+.............++.++.||++||+||+||+||..++|+++.+++++. ++|+||++|||+.+.++....|
T Consensus 340 ~~~~~~~~~~~~~~~~~g~~~~~~~~~Di~~ad~Il~~G~N~~~~~p~~~~~i~~a~-~~G~klividpr~t~~~~~~~~ 418 (776)
T PRK09129 340 IDHRLRQQDFRDDAAAPGAPWLGMPIAELSNLDAVLVVGSNLRKEHPLLAARLRQAA-KNGAKLSAINPVDDDFLFPVAQ 418 (776)
T ss_pred cccccCCccccchhhhhcccccCCCHHHHHhCCEEEEEecCcchhcHHHHHHHHHHH-HCCCeEEEecCCcccccccccc
Confidence 876533322111111111123456899999999999999999999999999999885 6899999999998877655566
Q ss_pred CCc------HHHHHHHH---------------------hcHHHHHHHHhcCCCcEEEEcCCc---ccHHHHHHHHHHHHH
Q psy11935 1100 GES------ADLIKQLA---------------------SGSHPFSKKLSAAKKPLIVVGADI---SDGAAVLALVQQLAA 1149 (1334)
Q Consensus 1100 Gtd------~a~l~~l~---------------------~g~~~~A~~l~~a~~~~ii~G~~~---~~g~~~~~al~~l~~ 1149 (1334)
|++ +.+|..+. +.++++|+.|+++++++|++|.++ .+|..+.+++..|+.
T Consensus 419 ~~~~~p~~~~~~la~l~~~i~~~~~~~~~e~~~~it~~~~I~~~A~~l~~a~~~~i~~G~g~~~~~~g~~~~~~i~~L~~ 498 (776)
T PRK09129 419 RIIVAPSAWADALAGVAAAVAAAKGVALPEALAKVLAAAAARAIAQSLANGERAAILLGNLAVNHPQAATLRALAQWIAK 498 (776)
T ss_pred CccCChHHHHHHHHHHHHHHHHhhcccChHHhhccCcHHHHHHHHHHHhcCCCeEEEECcccccCCCHHHHHHHHHHHHH
Confidence 643 22222211 136789999999999999999987 678888888888888
Q ss_pred hhcCCCCCCCCCcccccchhhhhhhhhhhcCCCcc-----hhhHhcCCCcEEEEECCChhh------hHHhhcCCCceEE
Q psy11935 1150 KVTCESDVPCDWKVLNILQKAASQVAALDIGYKPG-----TSAIREKPPKVLFLLGADEGS------ISRDDVGKDCFII 1218 (1334)
Q Consensus 1150 ~~g~~Gg~~~~~~~~~~l~~~~n~~G~~~~g~~pg-----~~~i~~g~ik~l~~~g~np~~------~~~~al~k~~fvV 1218 (1334)
.+|..+ .++...+|..|+.++|..|+ ...|..|++|++|++|+||+. ...++|.+++|+|
T Consensus 499 ltG~~~---------~~l~~~~n~~g~~~~g~~p~~~g~~~~~il~g~ikal~v~g~Np~~s~p~~~~~~~aL~kl~f~V 569 (776)
T PRK09129 499 LTGATL---------GFLTEAANSVGAHLAGALPGKGGLNAAAMLAQPRKAYLLLNVEPELDCADPAQARAALNQAEFVV 569 (776)
T ss_pred HHCCCE---------EccCcchHHHHHHHhCCCCCCcccCHHHHhCCCcCEEEEeCCCccccccCHHHHHHHHhcCCeEE
Confidence 877532 23444567788888887662 356778999999999999964 3478999999999
Q ss_pred EEcCCCChhh-ccccEEecCCCCCCCCcccccCCCceEEeccccCCCCCcccHHHHHHHHHHHhc
Q psy11935 1219 YQGHHGDHGA-SIADAILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPGLAREDWKIIRALSEGVS 1282 (1334)
Q Consensus 1219 ~~d~~~~eta-~~ADvVLP~a~~~Ek~Gt~~n~egrvq~~~~av~P~gear~dw~Il~~La~~lg 1282 (1334)
++|+|+|+|+ .+||||||+++|+|++|+|+|.+|++|.++|+|+|+|++|+||+||.+||++||
T Consensus 570 v~d~f~teTa~~~ADvVLPaa~~~E~~g~~~~~~g~~~~~~~~v~P~gear~d~~Il~~LA~~lG 634 (776)
T PRK09129 570 ALSAFASKATLDYADVLLPIAPFTETSGTFVNAEGRVQSFKGVVRPLGEARPAWKVLRVLGNLLG 634 (776)
T ss_pred EEeeecCcchhhcCCEEEcCCCcccCCceEECCCCceEEeccccCCCccchhHHHHHHHHHHHhC
Confidence 9999999999 999999999999999999999999999999999999999999999999999999
No 7
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=100.00 E-value=3.9e-98 Score=971.72 Aligned_cols=549 Identities=26% Similarity=0.406 Sum_probs=471.5
Q ss_pred cEEEEECCEEEEeCCCCcchh-----------------------------------------hhhhhcCCCCCCCEEEcC
Q psy11935 664 KFEVFIDDKKVMVDPGTTVLQ-----------------------------------------PVAACAMPVMKGWRVKTN 702 (1334)
Q Consensus 664 ~~~~~idg~~~~v~~g~til~-----------------------------------------~~~ac~~~~~~gm~v~t~ 702 (1334)
||+|+|||++|+|++|+|||+ +++||+|||.+||+|.|+
T Consensus 1 ~~~i~idg~~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~v~v~~g~~~~~~~~~~aC~~~v~~gm~v~t~ 80 (847)
T PRK08166 1 MATIHVDGKEYEVNGADNLLEACLSLGIDIPYFCWHPALGSVGACRQCAVKQYQNPEDTRGRLVMSCMTPATDGTFISID 80 (847)
T ss_pred CeEEEECCEEEEeCCCCHHHHHHHHcCCCCCccccCCCCCCCCccCCCeEEEeecCccCCCCcccCcCCCCCCCCEEEeC
Confidence 799999999999999999999 367999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCchhhhHHHhCCCCCcccccccCCCCCccchhhhhhccCCCCcccccce
Q psy11935 703 SEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFTDIDFSGKSGTYTRVTRQRSWGLIPSRVFLQS 782 (1334)
Q Consensus 703 s~~~~~~r~~~~~~ll~~hp~~C~~c~~~g~c~lq~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~lc~~~~ 782 (1334)
||.++++|+.||||||.|||+|||+||++|+|+|||+++.||+..++|.. .|| .
T Consensus 81 ~~~~~~~r~~~~e~ll~~hp~dc~~c~~~g~c~lq~~~~~~g~~~~~~~~----~~~----------------------~ 134 (847)
T PRK08166 81 DPEAKAFRASVVEWLMTNHPHDCPVCEEGGNCHLQDMTVMTGHSFRRYRF----TKR----------------------T 134 (847)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCccCCCCCchHHHHHHHhCCCCccCCC----cCc----------------------c
Confidence 99999999999999999999999999999999999999999999999975 455 3
Q ss_pred eecCCCcccccccccCCCCcEEEcCCHHHHHHHHHHHHHHhhCCCCCCcccccCCccchhhhhcccCccccccCCCCCce
Q psy11935 783 INRHWIGPVAACAMPVMKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGNDLGTTGRGSDMQ 862 (1334)
Q Consensus 783 v~~~~~~~~~aC~~~v~~gm~i~t~s~~~r~~r~~~~~~ll~~h~~~C~~C~~~g~c~~~~~e~~g~~~~~~~~rg~~~~ 862 (1334)
++++..+|+ |.+ +++|| |.|+|| ||+|+|++|..+|++.+||.+..
T Consensus 135 ~~~~~~~~~------------i~~--d~~rC--------------i~C~rC------Vr~c~e~~g~~~l~~~~~~~~~~ 180 (847)
T PRK08166 135 HRNQDLGPF------------ISH--EMNRC--------------IACYRC------VRYYKDYAGGTDLGVYGAHDNVY 180 (847)
T ss_pred ccccCCCCc------------eEe--cCCcC--------------ccccHH------HHHHHhhcCcceEEEeecCceeE
Confidence 344556788 998 99999 999999 99999999999999999999999
Q ss_pred eccccccccccccccccccccccccccccCCccc-CCCCcceeeeeecccCCCCCceEEEeeCCEEEEecCCCCCCCCcc
Q psy11935 863 VGTYVEKLFLSELSGNVIDLCPVGALTSKPYSFT-ARPWETRKTESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDINEE 941 (1334)
Q Consensus 863 i~~~~~~~~~~~~cg~cv~~CpvGAl~~k~~~~~-~r~we~~~~~s~c~~C~~gC~i~v~v~~g~v~ri~p~~~~~vn~g 941 (1334)
|+++.+.+++|.+||+||++|||||||+|+|.|+ +|+|+++.++|+|++|++||+|.+++++|+|+||.|++++++|+|
T Consensus 181 ~~~~~~~~~~~~~~G~cv~vCP~GAl~~k~~~~~~~r~w~l~~~~s~C~~C~~gC~i~v~~~~g~i~rv~~~~~~~~n~g 260 (847)
T PRK08166 181 FGRPEDGTLESEFSGNLVEVCPTGVFTDKTHSERYNRKWDMQFAPSICQHCSVGCNISPGERYGELRRIENRYNGAVNGY 260 (847)
T ss_pred ecCCCCCcccChhhCChHhhCCchhccccccccccCCCceeeEEEeeCCCCcCCCCeEEEeeCCEEEEEECCCCCCccCC
Confidence 9998888889999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccc-cccccCCceEecCCCCeeecCHHHHHHHHHHHhcc-CCEEEEeCCcCCHHHHHHHHHHHHHhCCCc
Q psy11935 942 WLADKGRFAYDGL-KRQRLLTPFVRNCDGQLVATEWEDALIAVAQKLQT-SEVAGVVGSLADAEAMVALKDLLNKLGSED 1019 (1334)
Q Consensus 942 ~lC~kgr~~~~~l-~~~Rl~~PliR~~~g~~~~iSWdeAl~~ia~~L~~-~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~ 1019 (1334)
|+|+||||+++++ +|+||++||+|.+ |+|+++||||||+.||++|++ ....+++++..++|+.|++++| +|++|
T Consensus 261 ~lC~kGr~~~~~~~~~dRl~~Pl~R~~-g~~~~isWdeAl~~ia~~l~~~~~~~G~~s~~~t~e~~~~l~k~---~gs~~ 336 (847)
T PRK08166 261 FLCDRGRFGYGYVNLKDRPRQPLQRRG-DDFITLNADQALQGAADILRQAKKVIGIGSPRASLESNFALREL---VGAEN 336 (847)
T ss_pred cCCHHHHhhhhhccccccCCcceeecC-CceeEeCHHHHHHHHHHHHHhhcceEEEECCCcchHHHHHHHHH---hCCCC
Confidence 9999999999999 5999999999985 899999999999999999998 4444578888899999988877 79988
Q ss_pred cccCCC----CCcchhhhhhhhhccCCCCcccccccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCCC----
Q psy11935 1020 LYTEYA----FPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVD---- 1091 (1334)
Q Consensus 1020 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~die~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~~---- 1091 (1334)
++.... .|.......+.....++.++.||++||+||+||+||.+++|+++.++++++ ++|+++++|||+.+
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~Ilv~G~N~~~~~p~~~~~i~~a~-~~gaklividpr~~~~~~ 415 (847)
T PRK08166 337 FYTGIAAGEQERLQLALKVLREGGIYTPSLREIESYDAVLVLGEDLTQTAARVALAVRQAV-KGKAREMAAAQKVADWQI 415 (847)
T ss_pred cccccChHHhhhhhHHHHHhhcCCCCCCCHHHHHhCCEEEEEeCChHHhhHHHHHHHHHHH-HcCCceEeeccccccchh
Confidence 865432 222111111221122456889999999999999999999999999999997 58899999999732
Q ss_pred ----------------------Cccccc------cCCCcHHHHHHHHh------------------cHHHHHHHHhcCCC
Q psy11935 1092 ----------------------LRYDYE------HLGESADLIKQLAS------------------GSHPFSKKLSAAKK 1125 (1334)
Q Consensus 1092 ----------------------~t~~~a------~~Gtd~a~l~~l~~------------------g~~~~A~~l~~a~~ 1125 (1334)
.++..+ .||++.+++.+++. .+.++|+.|+++++
T Consensus 416 ~~~~~~g~~~~~~l~vv~~~~t~~a~~Ad~~l~~~pg~~~~l~~al~~~~~~~~~~~~~~~~~~~~~i~~~A~~la~a~~ 495 (847)
T PRK08166 416 AAVRNIGQRAKSPLFITNVDETRLDDIAAWTYRAPPEDQARLGFAIAHALDNSAPAVDGLDPELQAKADVIAQALAGAKK 495 (847)
T ss_pred hhhhhcccccCcceEEecCchhhHHHHHhhhhcCCchhHHHHHHHHHhhhhhhcchhccCccchhHHHHHHHHHHhcCCC
Confidence 222222 38999888766631 57889999999999
Q ss_pred cEEEEcCCcccHHHHHHHHHHHHHhhcCCCCCCCCCcccccchhhhhhhhhhhcCCCcc---hhhHhcCCCcEEEEECCC
Q psy11935 1126 PLIVVGADISDGAAVLALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAALDIGYKPG---TSAIREKPPKVLFLLGAD 1202 (1334)
Q Consensus 1126 ~~ii~G~~~~~g~~~~~al~~l~~~~g~~Gg~~~~~~~~~~l~~~~n~~G~~~~g~~pg---~~~i~~g~ik~l~~~g~n 1202 (1334)
++|++|.+.... .....+.+|+..++..| .. .|+.++.+.+|.+|+.++|..+. ++++..|++|++|++|.|
T Consensus 496 ~~I~~G~g~~~~-~~~~~~~~l~~~l~~~g-~~---gG~~~l~~~~n~~G~~~~g~~~~~~l~~~i~~g~ikal~v~g~n 570 (847)
T PRK08166 496 PLIISGTSAGSP-AIIEAAANVAKALKGRG-AD---VGITLVAPEANSMGLALLGGGSLEEALEELESGRADAVIVLEND 570 (847)
T ss_pred cEEEEeCcccCh-HHHHHHHHHHHHHhccC-CC---ceEEEeccchhHHHHHHhcCCCHHHHHHHHHcCCCCEEEEeCCC
Confidence 999999988322 23333444444443221 11 23566777888889888875432 456778999999999999
Q ss_pred hhh-----hHHhhcCCCceEEEEcCCCChhhccccEEecCCCCCCCCcccccCCCceEEeccccCCCC-----CcccHHH
Q psy11935 1203 EGS-----ISRDDVGKDCFIIYQGHHGDHGASIADAILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPG-----LAREDWK 1272 (1334)
Q Consensus 1203 p~~-----~~~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~Gt~~n~egrvq~~~~av~P~g-----ear~dw~ 1272 (1334)
|+. .+.++|.+++|+|++|+|+|+|+.+||||||+++|+|++|+|+|.+|++|.++++++|+| ++|+||+
T Consensus 571 p~~~~~~~~~~~aL~~~dflVv~d~f~teTA~~ADvVLPaa~~~E~~Gt~~n~egr~q~~~~~v~p~g~~~~~e~r~dw~ 650 (847)
T PRK08166 571 LYRHAPAARVDAALAKAPLVIVLDHQRTATMEKAHLVLPAASFAESDGTLVNNEGRAQRFFQVYDPAYYDSKTVMLESWR 650 (847)
T ss_pred cccCcCHHHHHHHHhcCCEEEEEccccCCccccCCEEeccCcccccCceEECcCCcceeecceecCCCccccccccCCHH
Confidence 853 356789999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHhc
Q psy11935 1273 IIRALSEGVS 1282 (1334)
Q Consensus 1273 Il~~La~~lg 1282 (1334)
||+.||++||
T Consensus 651 I~~~La~~lg 660 (847)
T PRK08166 651 WLHSLHSTLL 660 (847)
T ss_pred HHHHHHHHhC
Confidence 9999999998
No 8
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=100.00 E-value=1.2e-95 Score=884.04 Aligned_cols=592 Identities=43% Similarity=0.694 Sum_probs=501.7
Q ss_pred cEEEEECCEEEEeCCCCcchh------------------------------------hhhhhcCCCCCCCEEEcCCHHHH
Q psy11935 664 KFEVFIDDKKVMVDPGTTVLQ------------------------------------PVAACAMPVMKGWRVKTNSEMTR 707 (1334)
Q Consensus 664 ~~~~~idg~~~~v~~g~til~------------------------------------~~~ac~~~~~~gm~v~t~s~~~~ 707 (1334)
|+||+|||++|+||+|+|||| |++||+|||.+||+|.|+||+|+
T Consensus 1 m~tI~IDG~ei~v~~g~tvLqAa~~aGi~IP~fCyh~~ls~~GaCRmClVEveg~~k~~~SC~tpv~dGM~I~T~s~~vk 80 (693)
T COG1034 1 MVTITIDGKEIEVPEGETVLQAAREAGIDIPTFCYHPRLSIAGACRMCLVEVEGAPKLVASCATPVTDGMVISTNSEEVK 80 (693)
T ss_pred CeEEEECCEEEecCCCcHHHHHHHHcCCCCCcccccCCCCcccceeEEEEEecCCCccccccccccCCCeEEecCCHHHH
Confidence 899999999999999999999 89999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCCCCCchhhhHHHhCCCCCcccccccCCCCCccchhhhhhccCCCCcccccceeecCC
Q psy11935 708 RAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFTDIDFSGKSGTYTRVTRQRSWGLIPSRVFLQSINRHW 787 (1334)
Q Consensus 708 ~~r~~~~~~ll~~hp~~C~~c~~~g~c~lq~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~lc~~~~v~~~~ 787 (1334)
++|++||||||+|||||||||||||+|+|||+++.||...+||.+ .|| .+.+++
T Consensus 81 ~~R~~vmE~LLiNHPlDCpiCD~gGeCeLQD~a~~~G~~~sr~~~----~kr----------------------~~~~~~ 134 (693)
T COG1034 81 KAREGVMEFLLINHPLDCPVCDKGGECELQDLAVKYGVSHSRYRE----TKR----------------------THRDKD 134 (693)
T ss_pred HHHHHHHHHHHhcCCCCCCccCCCCCchhHHHHHHhCCCcccccc----ccc----------------------cccccc
Confidence 999999999999999999999999999999999999999999988 677 677777
Q ss_pred CcccccccccCCCCcEEEcCCHHHHHHHHHHHHHHhhCCCCCCcccccCCccchhhhhcccCccccccCCCCCceecccc
Q psy11935 788 IGPVAACAMPVMKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGNDLGTTGRGSDMQVGTYV 867 (1334)
Q Consensus 788 ~~~~~aC~~~v~~gm~i~t~s~~~r~~r~~~~~~ll~~h~~~C~~C~~~g~c~~~~~e~~g~~~~~~~~rg~~~~i~~~~ 867 (1334)
.+|+ |.+ +|+|| |+|+|| ||||.|++|+.++++.+||.+..|+++.
T Consensus 135 ~gp~------------v~~--dm~RC--------------I~C~RC------VR~c~eiaG~~~l~~~~rg~~~~i~t~~ 180 (693)
T COG1034 135 LGPL------------VKY--DMNRC--------------ILCTRC------VRFCKEIAGTHELGVIKRGENSEIGTYL 180 (693)
T ss_pred ccch------------hhc--ccccc--------------eechhh------HHhhhhhcCccccceeecCCCceeeccc
Confidence 7888 777 99999 999999 9999999999999999999999999999
Q ss_pred ccccccccccccccccccccccccCCcccCCCCcceeeeeecccCCCCCceEEEeeCCEEEEecCCCCCCCCcccccccc
Q psy11935 868 EKLFLSELSGNVIDLCPVGALTSKPYSFTARPWETRKTESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKG 947 (1334)
Q Consensus 868 ~~~~~~~~cg~cv~~CpvGAl~~k~~~~~~r~we~~~~~s~c~~C~~gC~i~v~v~~g~v~ri~p~~~~~vn~g~lC~kg 947 (1334)
+.++.+++||+||++|||||||+|+|.|.+|+||+++++|+|++|++||+|.++++.|+++|+.|+.+..+|+.|+||+|
T Consensus 181 ~~~l~se~cGncv~vCPvGALt~K~~~~~ar~wEl~k~~si~~~~a~g~~i~~d~r~~ev~ri~~r~n~~vNe~~~~d~~ 260 (693)
T COG1034 181 DQPLESELCGNCVDVCPVGALTSKPFAFTARKWELKKTPSICVHCAVGCNIRVDERYGEVRRILPRYNEVVNEEWLCDKG 260 (693)
T ss_pred ccccccccccceeeeccccccccChHHhhhccchhccCceeeccCccccceeecccccchhhhcccchhHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccCCceEecCCCCeeecCHHHHHHHHHHHhcc---CCEEEEeCCcCCHHHHHHHHHHHHHhCCCccccCC
Q psy11935 948 RFAYDGLKRQRLLTPFVRNCDGQLVATEWEDALIAVAQKLQT---SEVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEY 1024 (1334)
Q Consensus 948 r~~~~~l~~~Rl~~PliR~~~g~~~~iSWdeAl~~ia~~L~~---~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~ 1024 (1334)
||+|++++.+|+.+|++|.+ |.|++++|.+|+..++..+.. .+++.++++..+.|+++++++|+..+|+.++++..
T Consensus 261 RF~~d~~~~~~~~~p~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~i~~~~~~~E~~~alk~l~~~l~s~~~~~~~ 339 (693)
T COG1034 261 RFAYDGLNLQRLDRPKIRVG-GRLVEASWLEANEAIAQALALIKPEKVGAIASPRASVEELFALKELAGELGSSNIDHRQ 339 (693)
T ss_pred cccccccccchhcccchhcC-CeeeecChHHHHHHHHHHHhhhcccccceeechhhhHHHHHHHHHHHHHhccCCccccc
Confidence 99999998666999999986 899999999999999988876 77888999999999999999999889999998852
Q ss_pred -CCCcchhhhhhhhhccCCCCcccccccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCCCCcccc---ccCC
Q psy11935 1025 -AFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDY---EHLG 1100 (1334)
Q Consensus 1025 -~~~~~~~~~~~~~~~~~~~~~~die~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~~~t~~~---a~~G 1100 (1334)
...... ...+..+.++.++.+++.+|.++++|.||+.++|+++.|++++++..+..+.++++.....+.. ...|
T Consensus 340 ~~~~~~~--~~~~~~~~~~~t~~~ie~~d~~l~ig~~~~~~~~~l~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (693)
T COG1034 340 EDARLDP--KVARAGYLYNPTIAEIESADAVLVIGANLRQEAPVLALRIRKAVKGKGLPVAVIGGVAEWLYALLLSILLG 417 (693)
T ss_pred hhhhcch--hhhcccccccccHhHHHhCchhhccCCCccccchhHHHHHHHHhhccCcceeeccchhHHHHHHHhhhhcc
Confidence 111111 2223445567899999999999999999999999999999999988889999999876665544 1234
Q ss_pred CcHHHHHHHHhcHHHHHHHHhcCCCcEEEEcCCc---ccHHHHHHHHHHHHHhhcCCCCCCCCCcccccchhhhhhhhhh
Q psy11935 1101 ESADLIKQLASGSHPFSKKLSAAKKPLIVVGADI---SDGAAVLALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAAL 1177 (1334)
Q Consensus 1101 td~a~l~~l~~g~~~~A~~l~~a~~~~ii~G~~~---~~g~~~~~al~~l~~~~g~~Gg~~~~~~~~~~l~~~~n~~G~~ 1177 (1334)
.+.+.+..+..+...+...+..+.++.++.|.++ ..+..++.....++..++.. ...|++ ..++..++.++++
T Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~---~~~~~~-~~~~~~a~~~~~~ 493 (693)
T COG1034 418 AGIALLDELALGAEAATAAVKKAERELIEKGKGALAGAKKAAILALAEKLADELGAA---EARWNG-VVLHEAASRVNAL 493 (693)
T ss_pred CCceeeehhhcchhHHHHHHHhccccceeecceeeccCCcceeeehhHHhhhhhhhh---hhcccc-chhhHHHHhhccc
Confidence 4444444445555556777778888888888666 44444444455555554432 224565 6677788888988
Q ss_pred hcCCCcch-----h-hHhcCCCcEEEEECCChhhhHHhhcCCCceEEEEcCCCChhhccccEEecCCCCCCCCcccccCC
Q psy11935 1178 DIGYKPGT-----S-AIREKPPKVLFLLGADEGSISRDDVGKDCFIIYQGHHGDHGASIADAILPGAAYTEKQSTYVNTE 1251 (1334)
Q Consensus 1178 ~~g~~pg~-----~-~i~~g~ik~l~~~g~np~~~~~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~Gt~~n~e 1251 (1334)
++++.|+. . .+.....++++++|.++.. ..++....|||++|++.+.++..||||||+++|+|++|||+|.|
T Consensus 494 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~vi~~~~~~~~~~~~a~vilp~a~~~e~~Gt~vN~e 571 (693)
T COG1034 494 GLGFLPGLSGEDAALMLGPADANALLLLGIDEEA--DEADEHAKFVVYSDHHGDAGAEVADVVLPAASFTEKSGTYVNLE 571 (693)
T ss_pred cccccccccchhHHhhccchhhceeeeeccchhh--hhhccCCCEEEEeccccccccchhheeccccccccccceEEeec
Confidence 88887752 1 1123568899999999732 23344578999999999999999999999999999999999999
Q ss_pred CceEEeccccCCCCCcccHHHHHHHHHHHhcCC-------------------CC---------CCCc-----------cc
Q psy11935 1252 GRAQQTLTAVTPPGLAREDWKIIRALSEGVSSN-------------------LS---------SEPV-----------DV 1292 (1334)
Q Consensus 1252 grvq~~~~av~P~gear~dw~Il~~La~~lg~~-------------------~~---------~~~~-----------~~ 1292 (1334)
||+|.+++++.|+|++++||.+++.|+..+|.. +. ..++ ..
T Consensus 572 GR~q~~~~a~~~~~~~~~~w~~l~~L~~~lg~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (693)
T COG1034 572 GRVQRFNQALRPGGDEREDWRVLHALASELGLKLDFDQLDAVRAALAAAHPGFALIDSAAKGEREPPAGEGILANRANIS 651 (693)
T ss_pred cccccccccccCcccchHHHHHHHHhHHHhCCCCCCchHHHHHHHHHHhccchhhhhhhhccccCCccccchhccccccc
Confidence 999999999999999999999999999999910 00 0000 00
Q ss_pred ccccc--ccccccchhhhchHHHHHhHHHHHhhh
Q psy11935 1293 KQKNL--EDYYMTDPISRASGTMAKCIQAVHKQK 1324 (1334)
Q Consensus 1293 ~~~~~--~~~y~td~i~r~s~~m~~~~~~~~~~~ 1324 (1334)
..... .+||+++|++|+|+.|++|..+..++.
T Consensus 652 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~g~~ 685 (693)
T COG1034 652 VAEPLQPQDFYLAMPGARNSPQAAKKLQLEVGQA 685 (693)
T ss_pred ccccCCccchhhhccccccCHHHHHhhhhhhccc
Confidence 00011 239999999999999999999886654
No 9
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=100.00 E-value=1.6e-75 Score=730.09 Aligned_cols=499 Identities=19% Similarity=0.285 Sum_probs=403.3
Q ss_pred cEEEEECCEEEEeCCCCcchh----------------------------------hhhhhcCCCCCCCEEEcCCHHHHHH
Q psy11935 664 KFEVFIDDKKVMVDPGTTVLQ----------------------------------PVAACAMPVMKGWRVKTNSEMTRRA 709 (1334)
Q Consensus 664 ~~~~~idg~~~~v~~g~til~----------------------------------~~~ac~~~~~~gm~v~t~s~~~~~~ 709 (1334)
||+|+|||++|+||+|+|||+ +++||.|||.+||+|.|+||++.++
T Consensus 1 mv~i~IdG~~v~~~~G~til~aa~~~gi~iP~lC~~~~~~~~G~Cr~C~VeV~G~~~~AC~t~v~dGM~V~T~s~~v~~~ 80 (819)
T PRK08493 1 MITITINGKECEAQEGEYILNVARRNGIFIPAICYLSGCSPTLACRLCMVEADGKRVYSCNTKAKEGMNILTNTPNLMDE 80 (819)
T ss_pred CeEEEECCEEEEeCCCCHHHHHHHHcCCccccccccCCCCCCccccceEEEECCEEeccccCCCCCCCEEEecCHHHHHH
Confidence 799999999999999999999 4679999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCchhhhHHHhCCCCCcccccccCCCCCccchhhhhhccCCCCcccccceeecCCCc
Q psy11935 710 REGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFTDIDFSGKSGTYTRVTRQRSWGLIPSRVFLQSINRHWIG 789 (1334)
Q Consensus 710 r~~~~~~ll~~hp~~C~~c~~~g~c~lq~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~lc~~~~v~~~~~~ 789 (1334)
|+.+|++||.|||+|||+||++|+|+||++++.||++..+|.. .++ ..+++. .
T Consensus 81 Rk~vle~ll~~HpldC~~Cd~~geCeLQ~~a~~~gv~~~~~~~----~~~----------------------~~~~~~-~ 133 (819)
T PRK08493 81 RNAIMQTYDVNHPLECGVCDKSGECELQNFTHEMGVNHQPYAI----KDT----------------------HKPHKH-W 133 (819)
T ss_pred HHHHHHHHHhccCCCCCcCCCCCCcHHHHHHHHhCCCCCcCcc----ccc----------------------cccccC-C
Confidence 9999999999999999999999999999999999999998864 111 111111 2
Q ss_pred ccccccccCCCCcEEEcCCHHHHHHHHHHHHHHhhCCCCCCcccccCCccchhhhhcccCccccccCCCCCce-------
Q psy11935 790 PVAACAMPVMKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGNDLGTTGRGSDMQ------- 862 (1334)
Q Consensus 790 ~~~aC~~~v~~gm~i~t~s~~~r~~r~~~~~~ll~~h~~~C~~C~~~g~c~~~~~e~~g~~~~~~~~rg~~~~------- 862 (1334)
|+ |.. ++.|| |.|.|| ||+|.+++|..+|++.+||.+..
T Consensus 134 ~~------------I~~--D~~rC--------------I~C~RC------Vr~C~ev~g~~al~~~~RG~~~~~~~~~~~ 179 (819)
T PRK08493 134 GK------------INY--DPSLC--------------IVCERC------VTVCKDKIGESALKTVPRGLDAPDKSFKES 179 (819)
T ss_pred Cc------------EEe--chhhc--------------ccccHH------HhhCcccccchhhhhccCCccccccccccc
Confidence 45 777 89999 999999 99999999999999999998843
Q ss_pred ----------------eccccccccccccccccccccccccccccCCcccCCCCcceeeeeecccCCCCCceEEEeeCCE
Q psy11935 863 ----------------VGTYVEKLFLSELSGNVIDLCPVGALTSKPYSFTARPWETRKTESVDVLDAVGSNIIVSTRTGE 926 (1334)
Q Consensus 863 ----------------i~~~~~~~~~~~~cg~cv~~CpvGAl~~k~~~~~~r~we~~~~~s~c~~C~~gC~i~v~v~~g~ 926 (1334)
|++..+....|++||+|+++||||||++|+|.|+.|+|++++++|+|++|++||++.+++++|.
T Consensus 180 ~~~da~~~~~~~~~~~i~~~~~~~~~C~~CG~Cv~VCPvGAL~~k~~~~~~~~wel~~v~TvCp~CsvGC~l~v~vk~~~ 259 (819)
T PRK08493 180 MPKDAYAVWSKKQKSLIGPVGGETLDCSFCGECIAVCPVGALSSSDFQYTSNAWELKKIPATCPHCSDCCLIYYDVKHSS 259 (819)
T ss_pred ccccchhhhhhcccceecccCCCcccccccCcHHHhCCCCccccCccccccCccccccccCcCCCCccCCCeEEEccCCe
Confidence 4555556678999999999999999999999999999999999999999999999999999987
Q ss_pred EEEecCC---CCCCCCcccccccccccccccc-ccccCCceEecCCCCeeecCHHHHHHHHHHHhccCCEEEEeCCcCCH
Q psy11935 927 VLRVLPR---LNEDINEEWLADKGRFAYDGLK-RQRLLTPFVRNCDGQLVATEWEDALIAVAQKLQTSEVAGVVGSLADA 1002 (1334)
Q Consensus 927 v~ri~p~---~~~~vn~g~lC~kgr~~~~~l~-~~Rl~~PliR~~~g~~~~iSWdeAl~~ia~~L~~~~i~~~~g~~~~~ 1002 (1334)
|+++.+. ...++|+||||+||||+|++++ ++|. +.+||+|++.+.+ . ++|++ |+.+|+
T Consensus 260 i~~~~~ki~rV~~~~N~G~LC~KGRfg~d~~~~~dR~-------------e~A~deA~e~lk~-~--~aI~~--S~~~TN 321 (819)
T PRK08493 260 ILNQESKIYRVSNDFYFNPLCGAGRFAFDFQNEADKD-------------EKAFKEAVEAFKE-A--KAIKF--NSFITN 321 (819)
T ss_pred EecccCccccccCCCCCcccCcccccccccccCCcch-------------HHHHHHHHHHHhh-C--CEEEe--cCCCCH
Confidence 7765542 2346899999999999999884 7652 5788888877653 1 55543 889999
Q ss_pred HHHHHHHHHHHHhCCCccccCCCCCcchhhhhhhhhcc--CCCCcccccccCeEEEEcCCccccchhHHHHHHHHHhhCC
Q psy11935 1003 EAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYL--LNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNE 1080 (1334)
Q Consensus 1003 e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~die~ad~Il~~G~np~~~~p~~~~rir~a~~~~g 1080 (1334)
|+.|++++|++.||++++++...+|. +...++...+| +++++.||++||+||+||+||.++||+++.|+++|++.+|
T Consensus 322 EE~YllqKLar~lgtnnvD~~aR~~~-~~~~~l~~~~G~~~t~sl~DI~~AD~IlviGsN~~e~hPvl~~~I~~A~k~~g 400 (819)
T PRK08493 322 EEALILQRLKKKFGLKLINEEALKFQ-QFLKVFSEVSGKSYSANLEDIKTSDFVVVAGSALKTDNPLLRYAINNALKMNK 400 (819)
T ss_pred HHHHHHHHHHHHhCCCCccchhhhhh-HHHHHHHHhcCCCCCCCHHHHhhCCEEEEECCChhhhCHHHHHHHHHHHHhCC
Confidence 99999999999999999988776653 33333433333 4678999999999999999999999999999999876689
Q ss_pred CeEEEEccCCCCcccc---------ccCCCcHHHHHHHH-----------------h-----------------------
Q psy11935 1081 LDVAYIGPKVDLRYDY---------EHLGESADLIKQLA-----------------S----------------------- 1111 (1334)
Q Consensus 1081 ~kiivIdp~~~~t~~~---------a~~Gtd~a~l~~l~-----------------~----------------------- 1111 (1334)
++++||||+.+.++.. ..||+|.+++.+|+ +
T Consensus 401 aklIvidPr~~~~~~~~a~~~~~l~~~PGtd~all~~ll~~ii~e~~id~~~~~F~~~~~~~~t~~~~~~~~~~~~~~~~ 480 (819)
T PRK08493 401 ASGLYFHPIKDNVIANLSKNFFCITHEVGAEEIILYFLLKKFLEEEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAE 480 (819)
T ss_pred CeEEEEecCCchhhhhhhhcceEeecCCCcHHHHHHHHHHHHHHcccchhhhhhHHhhhccccccccccccccccccccc
Confidence 9999999998765321 24999998865532 0
Q ss_pred --------------------------------c-----HHHHHHHHhcCCCcEEEEcCCc---ccHHHHHHHHHHHHHhh
Q psy11935 1112 --------------------------------G-----SHPFSKKLSAAKKPLIVVGADI---SDGAAVLALVQQLAAKV 1151 (1334)
Q Consensus 1112 --------------------------------g-----~~~~A~~l~~a~~~~ii~G~~~---~~g~~~~~al~~l~~~~ 1151 (1334)
| +.++|+.|+++++++|+||+|+ ++| ..|+.|+|++
T Consensus 481 ~~~~g~ee~~~~v~~~v~~~~~~~~~~~a~~~Gv~~e~i~~lA~~~a~a~~~~ii~G~gi~qh~~g----~NLA~LtG~I 556 (819)
T PRK08493 481 QGCENQEEVKKEVPKKVKKIPEVDTYLLLEELGINEETYEKLEALLAKKNNFTLVVGEDLYAHKNA----KNLAKLLGLI 556 (819)
T ss_pred cccccHHHHHHHhhhhhcccccCCHHHHHHHhCcCHHHHHHHHHHHhhCCCeEEEEecChhhCccH----HHHHHHHHhH
Confidence 1 2458899999999999999999 333 3567788888
Q ss_pred cCCCCCCCCCcccccchhhhhhhhhhhcCCCcchhhHhcCCCcEEEEECCChhhhHHhhcCCCceEEEEcCCCChhhccc
Q psy11935 1152 TCESDVPCDWKVLNILQKAASQVAALDIGYKPGTSAIREKPPKVLFLLGADEGSISRDDVGKDCFIIYQGHHGDHGASIA 1231 (1334)
Q Consensus 1152 g~~Gg~~~~~~~~~~l~~~~n~~G~~~~g~~pg~~~i~~g~ik~l~~~g~np~~~~~~al~k~~fvV~~d~~~~eta~~A 1231 (1334)
|+.+++ .+.++|+.+|+.|...+-- .+.....-|.+|.|. +.||.+... ..+
T Consensus 557 gk~s~~-----~v~~~p~~~N~~G~~~~c~-------l~~~~~~~~~~gyn~---------~g~f~~~~~-------~~~ 608 (819)
T PRK08493 557 QKYTAF-----KVILIPPSTNTLGVALICD-------LSEEIEGGKTVGYNE---------KGDFTISSL-------EKG 608 (819)
T ss_pred hhhcCc-----eEEeeCCCccHHHHHHHhc-------ccccccCCeeEEecC---------CCceEeccC-------Ccc
Confidence 775421 2567888899988643210 111223566888775 577876542 237
Q ss_pred cEEecCCCCCCCCcccccCCCceEEeccccCCCCCcccHHHHHHHHHHHhc
Q psy11935 1232 DAILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPGLAREDWKIIRALSEGVS 1282 (1334)
Q Consensus 1232 DvVLP~a~~~Ek~Gt~~n~egrvq~~~~av~P~gear~dw~Il~~La~~lg 1282 (1334)
|+.+|+- -..+|||+|.++||..+.||++--| -.|.+||++||
T Consensus 609 ~l~~~~l--~qqegt~~~~~~rv~p~~~a~~~~g------y~lndia~~~~ 651 (819)
T PRK08493 609 DLALPAL--NQQEGTFTNIDKRVVPTNAALPFEG------YDLNDIANALG 651 (819)
T ss_pred cccCcch--hhcCcceEeecCceecCccccCcCC------eeHHHHHHHhC
Confidence 9999964 4567999999999999999997655 35677788888
No 10
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=100.00 E-value=1.5e-62 Score=572.82 Aligned_cols=356 Identities=33% Similarity=0.523 Sum_probs=308.6
Q ss_pred eeecccCCCCCceEEEeeCCEEEEecCCCCCCCCccccccccccccccccccccCCceEecCCCCeeecCHHHHHHHHHH
Q psy11935 906 ESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGLKRQRLLTPFVRNCDGQLVATEWEDALIAVAQ 985 (1334)
Q Consensus 906 ~s~c~~C~~gC~i~v~v~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l~~~Rl~~PliR~~~g~~~~iSWdeAl~~ia~ 985 (1334)
+|||+||++||+|.+++++|+|+||.|+.++++|++|||+||||+|++++.+||++||+|.+.|+|+++||+|||+.+++
T Consensus 1 ~SId~~d~~Gcni~v~~r~~~V~Ri~p~~n~~vNe~wicdKgRf~yd~l~~~Rl~~Plir~~g~~~~~~sW~eAl~~ia~ 80 (366)
T cd02774 1 ESIDVLDSLGSNIRVDIKGNEILRILPKINDELNEEWISDKIRFSYDSLKYQRIKTPLLKLSNNSFLEIGWKTAFKFLNK 80 (366)
T ss_pred CccCCCCCCCCCeEEEEECCEEEEEecCCCCCCCCceecCCccccccccccccCCCCcEECCCCcEEEcCHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999997799999999975239999999999999999
Q ss_pred Hhcc---CCEEEEeCCcCCHHHHHHHHHHHHHhCCCccccCCCCCcchhhhhhhhhccCCCCcccccccCeEEEEcCCcc
Q psy11935 986 KLQT---SEVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPR 1062 (1334)
Q Consensus 986 ~L~~---~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~die~ad~Il~~G~np~ 1062 (1334)
+|+. +++++++|+.+|+|++|++++|++.+|++|+++...++......++...|.+++++.||++||+||+||+||+
T Consensus 81 ~l~~~~~~~i~~i~g~~~t~E~~~~lkkl~~~lgs~n~d~~~~~~~~~~~~~~~~~~~~~~sl~die~ad~illiG~n~~ 160 (366)
T cd02774 81 FILLKKFSKLNFIIGSKIDLETLFYYKKLLNKLGSLNTNSNNFLENNNYFNLDLENYLFNNSLKNLDKSDLCLLIGSNLR 160 (366)
T ss_pred HHhhcCcccEEEEECCCCCHHHHHHHHHHHHHhCCCceeccccccccccccccccCCccCCCHHHHhhCCEEEEEcCCcc
Confidence 9986 6799999999999999999999999999999987544321111223345677889999999999999999999
Q ss_pred ccchhHHHHHHHHHhhCCCeEEEEccCCCCccccccCCCcHHHHHHHHhcHHHHHHHHhcCCCcEEEEcCCc---ccHHH
Q psy11935 1063 FEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQLASGSHPFSKKLSAAKKPLIVVGADI---SDGAA 1139 (1334)
Q Consensus 1063 ~~~p~~~~rir~a~~~~g~kiivIdp~~~~t~~~a~~Gtd~a~l~~l~~g~~~~A~~l~~a~~~~ii~G~~~---~~g~~ 1139 (1334)
.++|+++.|+|++++++|++|++|||+.+++|...++|.++..+..+.+|.+.+++.|+.+++|+||+|.++ .++..
T Consensus 161 ~e~Pvl~~rlrka~~~~~~ki~vi~~~~~~~~~~~~l~~~~~~l~~~l~g~~~~~~~L~~ak~p~Ii~G~~~~~~~~~~~ 240 (366)
T cd02774 161 VESPILNIRLRNRYNKGNKKIFVIGNKFDTTYPSKHIGLSLNTLLKILEGKHLFCKQLKKSKKPLIIIGSSFSLRKNYSF 240 (366)
T ss_pred hhhHHHHHHHHHHHHcCCCEEEEeCCccccCCcHHHHCcCHHHHHHHHhcchHHHHHHhcCCCCEEEEChHHhCCCCHHH
Confidence 999999999999998889999999999999999999999999888888999999999999999999999988 56777
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCcccccchhhhhhhhhhhcCCC-cchhhHhcC-CCcEEEEECCChhhhHHhhcCCCceE
Q psy11935 1140 VLALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAALDIGYK-PGTSAIREK-PPKVLFLLGADEGSISRDDVGKDCFI 1217 (1334)
Q Consensus 1140 ~~~al~~l~~~~g~~Gg~~~~~~~~~~l~~~~n~~G~~~~g~~-pg~~~i~~g-~ik~l~~~g~np~~~~~~al~k~~fv 1217 (1334)
++.++..|+..++. .++.++..+|. ++++|+. |+.. .+ +...+|.++.+.+. .+.+.+||
T Consensus 241 ~~~~~~~l~~~~~~---------~~~~l~~~an~--a~~lG~~~~~~~---~~~~~~~l~~~~~~~~~----~l~~~~fv 302 (366)
T cd02774 241 IISKLKNFSSNNEN---------NFNFLNIISNS--LYYLGIKKFNSN---NKKNLSNLYYIKETNFQ----KFNKNNFV 302 (366)
T ss_pred HHHHHHHHHHhhcC---------ceEEeeHHHHH--HHhcCCCCccch---hcccceEEEEcCCchhh----cccCCCEE
Confidence 77778888776532 35556666666 8999984 5421 22 23444555444321 26778899
Q ss_pred EEEcCCCChhhccccEEecCCCCCCCCcccccCCCceEEeccccCCCCCcccHHHHHHHHHH
Q psy11935 1218 IYQGHHGDHGASIADAILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPGLAREDWKIIRALSE 1279 (1334)
Q Consensus 1218 V~~d~~~~eta~~ADvVLP~a~~~Ek~Gt~~n~egrvq~~~~av~P~gear~dw~Il~~La~ 1279 (1334)
||+++|+++++.+||||||+++|+|++|||+|+|||+|.+++++.|||++|+||.||+.|+.
T Consensus 303 iy~g~~~~~~a~~AdviLP~a~~~Ek~gt~vN~EGr~Q~~~~a~~~~g~ar~dw~Il~~L~~ 364 (366)
T cd02774 303 IYQGHHFLNLANNSNLILPSKTFFEKEALYLNLEGILQKTKKILSFKENIKSDDNIIFSLIL 364 (366)
T ss_pred EEecccCccchhhCcEEecCCcccccCceEECCCCcceeehhccCCccccCcHhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999985
No 11
>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1. The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made
Probab=100.00 E-value=5.8e-62 Score=580.76 Aligned_cols=368 Identities=64% Similarity=1.011 Sum_probs=330.8
Q ss_pred eeecccCCCCCceEEEeeCCEEEEecCCCCCCCCccccccccccccccccccccCCceEecCCCCeeecCHHHHHHHHHH
Q psy11935 906 ESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGLKRQRLLTPFVRNCDGQLVATEWEDALIAVAQ 985 (1334)
Q Consensus 906 ~s~c~~C~~gC~i~v~v~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l~~~Rl~~PliR~~~g~~~~iSWdeAl~~ia~ 985 (1334)
+|+|++|++||+|.+++++|+|+||.|++++|+|+||+|+||||+|++++++||++||+|.+ |+|+++|||||++.+|+
T Consensus 1 ~si~~~~~~GC~i~v~~~~g~i~ri~~~~~~~~n~g~lC~kgr~~~~~~~~~Rl~~Plir~~-g~~~~isWdeAl~~ia~ 79 (375)
T cd02773 1 ESIDVLDAVGSNIRVDTRGGEVMRILPRLNEDINEEWISDKTRFAYDGLKRQRLDKPYIRKN-GKLKPATWEEALAAIAK 79 (375)
T ss_pred CCcCCCCCCCCceEEEEeCCEEEEEeCCCCCCCCCCeecCcccccccccCccccCCCcEeeC-CcEeEcCHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999998999999999974 89999999999999999
Q ss_pred Hhcc---CCEEEEeCCcCCHHHHHHHHHHHHHhCCCccccCCCCCcchhhhhhhhhccCCCCcccccccCeEEEEcCCcc
Q psy11935 986 KLQT---SEVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPR 1062 (1334)
Q Consensus 986 ~L~~---~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~die~ad~Il~~G~np~ 1062 (1334)
+|++ +++++++|+..++|+++++++|++.+|++++++..++|.... .+...+.++.++.||++||+||+||+||.
T Consensus 80 ~l~~~~~~si~~~~g~~~~~e~~~~~~~~~~~~gs~~~~~~~~~~~~~~--~~~~~~~~~~~~~di~~ad~il~~G~N~~ 157 (375)
T cd02773 80 ALKGVKPDEIAAIAGDLADVESMVALKDLLNKLGSENLACEQDGPDLPA--DLRSNYLFNTTIAGIEEADAVLLVGTNPR 157 (375)
T ss_pred HHhhcCcCcEEEEeCCCCCHHHHHHHHHHHHHhCCCccccccccccccc--ccccccccCCCHHHHhhCCEEEEEcCCcc
Confidence 9998 689999999999999999999999999999888777775432 23334445678999999999999999999
Q ss_pred ccchhHHHHHHHHHhhCCCeEEEEccCCCCccccccCCCcHHHHHHHHhcHHHHHHHHhcCCCcEEEEcCCc---ccHHH
Q psy11935 1063 FEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQLASGSHPFSKKLSAAKKPLIVVGADI---SDGAA 1139 (1334)
Q Consensus 1063 ~~~p~~~~rir~a~~~~g~kiivIdp~~~~t~~~a~~Gtd~a~l~~l~~g~~~~A~~l~~a~~~~ii~G~~~---~~g~~ 1139 (1334)
.++|+++.|++++++++|++|++|||+.+.|+..+++|+|.+++.++++|..+||+.|+++++++|++|.+. .+|..
T Consensus 158 ~~~p~~~~~~~~~~~~~g~kli~idp~~~~t~~~~~~g~d~~~l~~l~~~~~~~a~~l~~a~~~~ii~g~g~~~~~~~~~ 237 (375)
T cd02773 158 FEAPVLNARIRKAWLHGGLKVGVIGPPVDLTYDYDHLGTDAKTLQDIASGKHPFSKALKDAKKPMIIVGSGALARKDGAA 237 (375)
T ss_pred hhchHHHHHHHHHHHcCCCEEEEEcCccccchhhccCCCcHHHHHHHHHhHHHHHHHHhcCCCcEEEecchhhccccHHH
Confidence 999999999999887789999999999999999999999999999999999999999999999999999988 67888
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCcccccchhhhhhhhhhhcCCCcchhhH-hcCCCcEEEEECCChhhhHHhhcCCCceEE
Q psy11935 1140 VLALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAALDIGYKPGTSAI-REKPPKVLFLLGADEGSISRDDVGKDCFII 1218 (1334)
Q Consensus 1140 ~~~al~~l~~~~g~~Gg~~~~~~~~~~l~~~~n~~G~~~~g~~pg~~~i-~~g~ik~l~~~g~np~~~~~~al~k~~fvV 1218 (1334)
++.++..|+..+|..|+ +|.|+++++..+|.+|+.++|+.|+.... ..|+++++|++|.||+... ...+.+|+|
T Consensus 238 ~~~~i~~l~~~~g~~~~---~~~g~~~~~~~~n~~g~~~~g~~~~~~~~~~~g~i~~l~v~g~np~~~~--~~~~~~~~v 312 (375)
T cd02773 238 ILAAVAKLAKKNGVVRE---GWNGFNVLHRAASRVGALDLGFVPGAGAIRKSGPPKVLYLLGADEIDIT--PIPKDAFVV 312 (375)
T ss_pred HHHHHHHHHHHhCCcCC---CCceEeecchHHHHHHhhccCCCCCcchhhccCCccEEEEcCCCccccC--CCCCCCEEE
Confidence 88888888888876432 34567888888999999999998874322 3589999999999996432 233678999
Q ss_pred EEcCCCChhhccccEEecCCCCCCCCcccccCCCceEEeccccCCCCCcccHHHHHHHHHHHh
Q psy11935 1219 YQGHHGDHGASIADAILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPGLAREDWKIIRALSEGV 1281 (1334)
Q Consensus 1219 ~~d~~~~eta~~ADvVLP~a~~~Ek~Gt~~n~egrvq~~~~av~P~gear~dw~Il~~La~~l 1281 (1334)
++|+|+++|+.+||||||+++|+|++|+|+|.+|++|.++++++|+|++|+||+||..|+++|
T Consensus 313 ~~d~~~~~ta~~AdvvLP~~~~~E~~g~~~n~~~~~~~~~~~v~p~~~~~~d~~i~~~l~~~~ 375 (375)
T cd02773 313 YQGHHGDRGAQIADVILPGAAYTEKSGTYVNTEGRVQQTRKAVSPPGDAREDWKILRALSEVL 375 (375)
T ss_pred EECCCCCcchhhCcEEecCCCcccCCCeEEcCCCeEEeeccccCCCccchHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999999999999875
No 12
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=7.4e-58 Score=565.82 Aligned_cols=363 Identities=19% Similarity=0.244 Sum_probs=315.8
Q ss_pred eeecccCCCCCceEEEeeCCEEEEecCCCCCCCCccccccccccccccc-cccccCCceEecC-CCCeeecCHHHHHHHH
Q psy11935 906 ESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGL-KRQRLLTPFVRNC-DGQLVATEWEDALIAV 983 (1334)
Q Consensus 906 ~s~c~~C~~gC~i~v~v~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l-~~~Rl~~PliR~~-~g~~~~iSWdeAl~~i 983 (1334)
.|+|++|++||++.|++++|+|++|+|++++|+|+|++|+||++.++.+ +|+||++||+|.+ +|+|++|||||||+.|
T Consensus 1 ~tvC~~C~~gCgi~v~v~dg~iv~veg~~d~pin~G~lC~KG~~~~~~~~s~~RL~~Pl~R~~g~g~~~~iSWdeAld~i 80 (649)
T cd02752 1 RTICPYCSVGCGLIAYVQNGVWVHQEGDPDHPVNRGSLCPKGAALRDFVHSPKRLKYPMYRAPGSGKWEEISWDEALDEI 80 (649)
T ss_pred CccCcCcccCCCeEEEEECCEEEEEEeCCCCCCCCCCcChhHHHHHHhhcCcccccCCEEecCCCCCEEEeCHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999998 5999999999963 4799999999999999
Q ss_pred HHHhcc-------------------CCEEEEeCCcCCHHHHHHHHHHHHHhCCCccccCCCCCcchhhhhhhhhcc---C
Q psy11935 984 AQKLQT-------------------SEVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYL---L 1041 (1334)
Q Consensus 984 a~~L~~-------------------~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~---~ 1041 (1334)
|++|++ ++|++++|+..++|..|++++|++.+|++++++...+|+.+...++..+|| +
T Consensus 81 A~klk~i~~~~~~~~~~~g~~~~g~~si~~~gs~~~~nE~~~~~~kl~r~lGt~~id~~ar~C~~~tv~~l~~~~G~ga~ 160 (649)
T cd02752 81 ARKMKDIRDASFVEKNAAGVVVNRPDSIAFLGSAKLSNEECYLIRKFARALGTNNLDHQARIUHSPTVAGLANTFGRGAM 160 (649)
T ss_pred HHHHHHHHHHhcccccccccccCCCceEEEEccCCCCchHHHHHHHHHHHhCCCcccCCcchhhhHHHHHHHhhcCCCCC
Confidence 999986 247888888999999999999999999999999888998765555555554 4
Q ss_pred CCCcccccccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCCCCcccccc------CCCcHHHHHHHHh----
Q psy11935 1042 NNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEH------LGESADLIKQLAS---- 1111 (1334)
Q Consensus 1042 ~~~~~die~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~~~t~~~a~------~Gtd~a~l~~l~~---- 1111 (1334)
++++.||++||+||+||+||.++||+.+.+++++++++|++|||||||++.|+..++ ||||.+|+.+++.
T Consensus 161 tns~~Di~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDPR~t~Ta~~AD~~l~irPGTD~All~gmi~~ii~ 240 (649)
T cd02752 161 TNSWNDIKNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPRFTRTAAKADLYVPIRSGTDIAFLGGMINYIIR 240 (649)
T ss_pred CCCHHHHhcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcCCCCchhHhcCEeeCcCCChHHHHHHHHHHHHHh
Confidence 678999999999999999999999999999999875559999999999999988765 8999999887642
Q ss_pred ---------------cHHHHHHHHhcC----CCcEEEEcCCc---ccHHHHHHHHHHH---HHhhcCCCCCCCCCccccc
Q psy11935 1112 ---------------GSHPFSKKLSAA----KKPLIVVGADI---SDGAAVLALVQQL---AAKVTCESDVPCDWKVLNI 1166 (1334)
Q Consensus 1112 ---------------g~~~~A~~l~~a----~~~~ii~G~~~---~~g~~~~~al~~l---~~~~g~~Gg~~~~~~~~~~ 1166 (1334)
.|.++|+.|+++ ++++|++|.|. .+|.++++++..| +|++|++|+ |+++
T Consensus 241 ytpe~v~~itGvp~e~I~~~A~~~a~a~~~~k~~~i~~g~G~tq~~~G~~~ira~~~L~lllGniG~pGg------Gv~~ 314 (649)
T cd02752 241 YTPEEVEDICGVPKEDFLKVAEMFAATGRPDKPGTILYAMGWTQHTVGSQNIRAMCILQLLLGNIGVAGG------GVNA 314 (649)
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHhccCCCCcEEEEECCcccccccHHHHHHHHHHHHHHhCCCCCCCC------ccCc
Confidence 267899999998 77899999998 5677766665554 555666653 4677
Q ss_pred chhhhhhhhhhhcCCCcchhhHhcCCCcEEEEECCChhhh------HHhhcCCCceEEEEcCCCChhhcccc--------
Q psy11935 1167 LQKAASQVAALDIGYKPGTSAIREKPPKVLFLLGADEGSI------SRDDVGKDCFIIYQGHHGDHGASIAD-------- 1232 (1334)
Q Consensus 1167 l~~~~n~~G~~~~g~~pg~~~i~~g~ik~l~~~g~np~~~------~~~al~k~~fvV~~d~~~~eta~~AD-------- 1232 (1334)
+++..|.+|+.++|..+. ...| |+.|.||+.. .+++|.+++|+|++|+|+|+|+.+||
T Consensus 315 lrg~~NvqGa~d~g~l~~---~lpg-----y~~G~Np~~s~p~~~~~~~Al~kld~lVv~D~f~teTa~~Ad~~~~~~~~ 386 (649)
T cd02752 315 LRGHSNVQGATDLGLLSH---NLPG-----YLGGQNPNSSFPNANKVRRALDKLDWLVVIDPFPTETAAFWKNPGMDPKS 386 (649)
T ss_pred CCCccccccccccccCcc---cCcc-----ccCCcChhhcCCCHHHHHHHHhcCCeEEEEeCCCCHHHHhhcccCCcccc
Confidence 888889999988876432 0111 2238999542 47899999999999999999999999
Q ss_pred -----EEecCCCCCCCCcccccCCCceEEeccccCCCCCcccHHHHHHHHHHHhc
Q psy11935 1233 -----AILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPGLAREDWKIIRALSEGVS 1282 (1334)
Q Consensus 1233 -----vVLP~a~~~Ek~Gt~~n~egrvq~~~~av~P~gear~dw~Il~~La~~lg 1282 (1334)
||||+++|+|++|+|+|+++++|..+++++|+|++|+||+|+..|+++||
T Consensus 387 ~~t~vvvLPaa~~~Ek~Gt~tn~~r~vq~~~kav~P~gear~D~~Il~~La~rlg 441 (649)
T cd02752 387 IQTEVFLLPAACQYEKEGSITNSGRWLQWRYKVVEPPGEAKSDGDILVELAKRLG 441 (649)
T ss_pred ccCceEEECCCCccccCcceecCCceEEEECCccCCCccCCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999
No 13
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=100.00 E-value=6.5e-57 Score=541.34 Aligned_cols=365 Identities=44% Similarity=0.640 Sum_probs=305.2
Q ss_pred eeecccCCCCCceEEEeeCCEEEEecCCCCCCCCcccccccccccccccc-ccccCCceEecCCCCeeecCHHHHHHHHH
Q psy11935 906 ESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGLK-RQRLLTPFVRNCDGQLVATEWEDALIAVA 984 (1334)
Q Consensus 906 ~s~c~~C~~gC~i~v~v~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l~-~~Rl~~PliR~~~g~~~~iSWdeAl~~ia 984 (1334)
+|+|++|+.||++.|++++|+|+||+|++++|+|+||+|+||||++++++ |+||++||+|.+ |+|+++|||||++.+|
T Consensus 1 ~s~C~~C~~gC~i~v~~~~g~i~~i~~~~~~~~n~g~~C~kg~~~~~~~~~~~Rl~~Pl~r~~-~~~~~isWdeAl~~ia 79 (386)
T cd02768 1 ESIDVHDALGSNIRVDVRGGEVMRILPRENEAINEEWISDKGRFGYDGLNSRQRLTQPLIKKG-GKLVPVSWEEALKTVA 79 (386)
T ss_pred CccCCCCCCCCCeEEEEECCEEEEEeCCCCCCCCCceecccccchhhccCCcccccCCeEecC-CceeEcCHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999995 999999999985 8999999999999999
Q ss_pred HHhcc---CCEEEEeCCcCCHHHHHHHHHHHHHhCCCccccCCCCCcchhhhhhhhhccCCCCcccccccCeEEEEcCCc
Q psy11935 985 QKLQT---SEVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNP 1061 (1334)
Q Consensus 985 ~~L~~---~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~die~ad~Il~~G~np 1061 (1334)
++|++ +++++++|+..++|..+++++|++.+|++++++....+...........+..+.++.|+++||+||+||+||
T Consensus 80 ~~l~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il~~G~n~ 159 (386)
T cd02768 80 EGLKAVKGDKIGGIAGPRADLESLFLLKKLLNKLGSNNIDHRLRQSDLPADNRLRGNYLFNTSIAEIEEADAVLLIGSNL 159 (386)
T ss_pred HHHHhcChhheEEEecCCCCHHHHHHHHHHHHHhCCCCchhhhccccCccccccccCcccCCCHHHHhhCCEEEEEcCCc
Confidence 99998 489999999999999999999999999998876544433222111111233456889999999999999999
Q ss_pred cccchhHHHHHHHHHhhCCCeEEEEccCCCCccccc------cCC-CcHHHHHHHHh--cHHHHHHHHhcCCCcEEEEcC
Q psy11935 1062 RFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYE------HLG-ESADLIKQLAS--GSHPFSKKLSAAKKPLIVVGA 1132 (1334)
Q Consensus 1062 ~~~~p~~~~rir~a~~~~g~kiivIdp~~~~t~~~a------~~G-td~a~l~~l~~--g~~~~A~~l~~a~~~~ii~G~ 1132 (1334)
..++|+++.+++++.+++|++|++|||+.+.+ .+ .|| .+.+.+..+.. ++.++|+.|+.+++++|++|.
T Consensus 160 ~~~~p~~~~~~~~a~~~~g~kli~idp~~t~~--~ad~~~~~~pg~~~~~~l~~~i~~~~~~~~a~~l~~a~~~~i~~g~ 237 (386)
T cd02768 160 RKEAPLLNARLRKAVKKKGAKIAVIGPKDTDL--IADLTYPVSPLGASLATLLDIAEGKHLKPFAKSLKKAKKPLIILGS 237 (386)
T ss_pred chhchHHHHHHHHHHHcCCCeEEEECCCcccc--ccceEEEcCCchhHHHHHHHHHhhccHHHHHHHHhcCCCcEEEEcc
Confidence 99999999999999766699999999999877 33 378 45555555543 345899999999999999999
Q ss_pred Cc--ccHHHHHHHHHHHHHhhcCCCCCCCCCcccccchhhhhhhhhhhcC--CCcchhhHhcCCCcEEEEECCChhhh--
Q psy11935 1133 DI--SDGAAVLALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAALDIG--YKPGTSAIREKPPKVLFLLGADEGSI-- 1206 (1334)
Q Consensus 1133 ~~--~~g~~~~~al~~l~~~~g~~Gg~~~~~~~~~~l~~~~n~~G~~~~g--~~pg~~~i~~g~ik~l~~~g~np~~~-- 1206 (1334)
+. .+|...++++..|+..+|.+|++ ...+...|..|...++ +.+.+..+..|+++++|++|.||...
T Consensus 238 ~~~~~~~~~~~~a~~~l~~~~G~~~~~-------~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~i~~l~v~~~np~~~~p 310 (386)
T cd02768 238 SALRKDGAAILKALANLAAKLGTGAGL-------WNGLNVLNSVGARLGGAGLDAGLALLEPGKAKLLLLGEDELDRSNP 310 (386)
T ss_pred hhhcCCcHHHHHHHHHHHHHhCCCCcc-------ccccHHHHHHHHHHhcCCHHHHhhhccCCceeEEEEcCCCccccCh
Confidence 88 57888889999999888754321 1122234444544443 22334445678899999999999643
Q ss_pred --HHhhcCCCceEEEEcCCCChhhccccEEecCCCCCCCCcccccCCCceEEeccccCCCCCcccHHHHHHHHHHHh
Q psy11935 1207 --SRDDVGKDCFIIYQGHHGDHGASIADAILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPGLAREDWKIIRALSEGV 1281 (1334)
Q Consensus 1207 --~~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~Gt~~n~egrvq~~~~av~P~gear~dw~Il~~La~~l 1281 (1334)
.. +|.+++|+|++|+|+|+|+.+||||||+++|+|++|+|+|.+|++|.++|+++|+|++|+||+|+.+||++|
T Consensus 311 ~~~~-al~~~~~~Vv~d~~~teta~~ADvvLP~~~~~E~~g~~~~~~~~~~~~~~~i~p~~~~~~d~~i~~~La~~~ 386 (386)
T cd02768 311 PAAV-ALAAADAFVVYQGHHGDTGAQADVILPAAAFTEKSGTYVNTEGRVQRFKKAVSPPGDAREDWKILRALSNLL 386 (386)
T ss_pred HHHH-HHhcCCeEEEEeccCchhhhhCCEEeccCcccccCceEECCCCceEEeccccCCCccchhHHHHHHHHHhhC
Confidence 23 899999999999999999999999999999999999999999999999999999999999999999999875
No 14
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type. This model is well-defined, with a large, unpopulated trusted/noise gap.
Probab=100.00 E-value=5.7e-57 Score=581.67 Aligned_cols=374 Identities=20% Similarity=0.241 Sum_probs=313.4
Q ss_pred ceeeeeecccCCCCCceEEEe-------eCCEEEEecCCCCCCCCccccccccccccccc-cccccCCceEec-CCCCee
Q psy11935 902 TRKTESVDVLDAVGSNIIVST-------RTGEVLRVLPRLNEDINEEWLADKGRFAYDGL-KRQRLLTPFVRN-CDGQLV 972 (1334)
Q Consensus 902 ~~~~~s~c~~C~~gC~i~v~v-------~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l-~~~Rl~~PliR~-~~g~~~ 972 (1334)
.+.++|+|++|++||++.++| ++|+|++|+|+++||+|+|++|+||+++++.+ +|+||++||+|. ++|+|+
T Consensus 42 ~~~v~SvC~~C~~gCgl~v~v~~~~~~~~dg~vv~v~g~~~~Pvn~G~lC~KG~~~~~~~~~pdRL~~PL~R~~G~g~~~ 121 (1009)
T TIGR01553 42 AKQTTSVCCYCSVSCGLLVYSSSHTGDNKTNRAIHVEGDPDHPINRGSLCPKGASTWDLVNNERRPANPLYRAPGSDQWE 121 (1009)
T ss_pred ceEEeeECCCCcCCCCEEEEEccccccccCCeEEEEECCCCCCCCCCccCHhHHHHHHhhcCCCcccCCEEecCCCCceE
Confidence 478999999999999999999 78999999999999999999999999999998 699999999997 467999
Q ss_pred ecCHHHHHHHHHHHhcc--C-----------------CEEEEeCCcCCHHHHHHHHHHHHHhCCCccccCCCCCcchhhh
Q psy11935 973 ATEWEDALIAVAQKLQT--S-----------------EVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGT 1033 (1334)
Q Consensus 973 ~iSWdeAl~~ia~~L~~--~-----------------~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~ 1033 (1334)
+|||||||+.||++|++ + ++++++|+..++|..|++++|++.+|++|+++..++|+.+...
T Consensus 122 ~ISWDEAld~IA~kLk~i~~~~~~~~~~~G~~~~~~~sia~~~s~~~tnEe~yl~~kf~r~lGt~n~~~~~~~C~~~~~~ 201 (1009)
T TIGR01553 122 EISWDWAIDTIARRVKDTRDATFVTKDAKGQVVNRCDGIASVGSSAMDNEECWLYQKWLRSLGLFYIEHQARIUHSPTVA 201 (1009)
T ss_pred EeCHHHHHHHHHHHHHHHHHhhhcccccCCccccccceEEEEecCCCCcHHHHHHHHHHHHhCCCcccCcccccccHHHH
Confidence 99999999999999986 2 3677888889999999999999999999999999999877666
Q ss_pred hhhhhccC---CCCcccccccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCCCCcccccc------CCCcHH
Q psy11935 1034 DLRANYLL---NNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEH------LGESAD 1104 (1334)
Q Consensus 1034 ~~~~~~~~---~~~~~die~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~~~t~~~a~------~Gtd~a 1104 (1334)
++..+||. +.++.|+++||+||+||+||.+++|+.+.+++++. ++|+||||||||++.|+..++ ||||.+
T Consensus 202 al~~~~G~~~~~~~~~Di~~Ad~Ilv~G~Np~es~p~~~~~i~~Ak-~~GakiIvIDPR~t~tA~~AD~~l~irPGTD~A 280 (1009)
T TIGR01553 202 SLAPSFGRGAMTNNWVDIKNSDLILVMGGNPAENHPIGFKWAIRAK-KKGAKIIHIDPRFNRTATVADLYAPIRSGSDIA 280 (1009)
T ss_pred HHHHhhcCCCCCCCHHHHHhCCEEEEECCChhhhChHHHHHHHHHH-HcCCEEEEEcCCCCchhHhhccEeCCCCChHHH
Confidence 66655553 56789999999999999999999999888998875 689999999999999988775 899999
Q ss_pred HHHHHH------------------h-------------------------------------------------------
Q psy11935 1105 LIKQLA------------------S------------------------------------------------------- 1111 (1334)
Q Consensus 1105 ~l~~l~------------------~------------------------------------------------------- 1111 (1334)
|+.+|+ .
T Consensus 281 L~~am~~~Ii~e~l~D~~Fv~~~T~gp~LV~~~~~~~~g~f~g~d~~~~~~~~~~w~~~~~~~g~~~~~~~l~~~~tvf~ 360 (1009)
T TIGR01553 281 FLNGMIKYILEKELYQKEYVVNYTNASFIVGEGFAFEDGLFAGYNKETRKYDKSKWGYEFDENGNPKRDETLKHPRCVFN 360 (1009)
T ss_pred HHHHHHHHHHHCCCccHHHHHHHcCCcccccccccccccccccccccccccccccccccccccccccccccccccccHHH
Confidence 876542 1
Q ss_pred -----------------------cHHHHHHHHhcCC----CcEEEEcCCc---ccHHHHHHHH---HHHHHhhcCCCCCC
Q psy11935 1112 -----------------------GSHPFSKKLSAAK----KPLIVVGADI---SDGAAVLALV---QQLAAKVTCESDVP 1158 (1334)
Q Consensus 1112 -----------------------g~~~~A~~l~~a~----~~~ii~G~~~---~~g~~~~~al---~~l~~~~g~~Gg~~ 1158 (1334)
.|+++|+.|+.++ +++|++|+|. .+|.+.++++ +.|+|++|++||+.
T Consensus 361 ~lk~~v~~yTpE~va~itGVpae~I~~lA~~~a~a~~p~k~~~i~~g~G~tqh~~G~~~vrai~~L~lLtGniG~pGgG~ 440 (1009)
T TIGR01553 361 ILKEHYSRYTPEKVSAICGTPKELFLKVYEEYCKTGKPNKAMTILYALGWTQHSVGTQNIRAMSINQLLLGNIGVPGGGI 440 (1009)
T ss_pred HHHHHHHhCCHHHHHHHHCcCHHHHHHHHHHHHhcCCCCCcEEEEeCCccccchhHHHHHHHHHHHHHHhCCCCCCCCcc
Confidence 1346789998874 5678888887 6777666654 45566777777532
Q ss_pred CCCcccccchhhhhhhhhhhcC----------------------------------------------------------
Q psy11935 1159 CDWKVLNILQKAASQVAALDIG---------------------------------------------------------- 1180 (1334)
Q Consensus 1159 ~~~~~~~~l~~~~n~~G~~~~g---------------------------------------------------------- 1180 (1334)
+++++..|.+|..++|
T Consensus 441 ------~~lrG~~NvqG~~d~g~~~~~lPgy~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~ 514 (1009)
T TIGR01553 441 ------NALRGHSNVQGSTDHGLLMHILPGYLGTPRASIPTYEQYTKKFTPVSKDPQSANYWSNFPKFFASYIKSMWGDA 514 (1009)
T ss_pred ------ccCCCccccCCCcccccCcccCCcccccCchhhhhhhhhhhccccccccccccchhhccchhHHHHHHHhhccc
Confidence 1222222222111111
Q ss_pred ----------CCc----c-------hhhHhcCCCcEEEEECCChhh------hHHhhcCCCceEEEEcCCCChhhccc--
Q psy11935 1181 ----------YKP----G-------TSAIREKPPKVLFLLGADEGS------ISRDDVGKDCFIIYQGHHGDHGASIA-- 1231 (1334)
Q Consensus 1181 ----------~~p----g-------~~~i~~g~ik~l~~~g~np~~------~~~~al~k~~fvV~~d~~~~eta~~A-- 1231 (1334)
+.| | +++|..|+||++|++|.||+. ..+++|.+++|+|++|+|+|+||.||
T Consensus 515 ~~~~n~~~~~~~p~~~~g~~~~~~~~~~~~~G~Ik~l~v~G~Np~~s~P~~~~~~~AL~kLdflVv~D~f~teTA~~A~~ 594 (1009)
T TIGR01553 515 ATNENGWAYDYLPKGEDGYDSWLTLFDDMFQGKIKGFFAWGQNPLNSGPNSNKTREALTKLKWMVVMDPFDNETGSFWRG 594 (1009)
T ss_pred cccccccccccCCccccccchHHHHHHHHhCCCceEEEEeCCChhhcCCCHHHHHHHHhCCCEEEEEeCccCHHHHhhhh
Confidence 111 1 245668999999999999964 35789999999999999999999998
Q ss_pred -----------cEEecCCCCCCCCcccccCCCceEEeccccCCCCCcccHHHHHHHHHHHhc
Q psy11935 1232 -----------DAILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPGLAREDWKIIRALSEGVS 1282 (1334)
Q Consensus 1232 -----------DvVLP~a~~~Ek~Gt~~n~egrvq~~~~av~P~gear~dw~Il~~La~~lg 1282 (1334)
|||||+++|+|++|+++|+++++|..+++|+|+|++|+||+|+.+||++||
T Consensus 595 ~~~~~~d~~t~dvVLPaa~~~Ek~gt~tn~~r~vq~~~kav~P~gear~D~~I~~~La~rl~ 656 (1009)
T TIGR01553 595 PGMDPKEIKTEVFFLPTAVFIEKEGSISNSGRWMQWRYKGPDPPGNAIPDGDIIVELAKRVQ 656 (1009)
T ss_pred cCCcccccCccEEEECCCCccccCeeEEcCCceEEEecccCCCccccCCHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999998
No 15
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=1.9e-56 Score=562.15 Aligned_cols=371 Identities=23% Similarity=0.334 Sum_probs=308.0
Q ss_pred eeecccCCCCCceEEEeeCCEEEEecCCCCCCCCccccccccccccccc-cccccCCceEecCCCCeeecCHHHHHHHHH
Q psy11935 906 ESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGL-KRQRLLTPFVRNCDGQLVATEWEDALIAVA 984 (1334)
Q Consensus 906 ~s~c~~C~~gC~i~v~v~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l-~~~Rl~~PliR~~~g~~~~iSWdeAl~~ia 984 (1334)
+|+|++|+.||+|.|+++||+|+||+|++++|+|+|++|+||+++++.+ +|+||++||+|.+.|+|++||||||++.||
T Consensus 1 ~t~C~~C~~~C~i~v~v~dg~i~ri~g~~~~p~~~g~lC~kG~~~~~~~y~p~Rl~~Pl~R~~~~~~~~iSWdeAl~~ia 80 (565)
T cd02754 1 KTTCPYCGVGCGVEIGVKDGKVVAVRGDPEHPVNRGRLCIKGLNLHKTLNGPERLTRPLLRRNGGELVPVSWDEALDLIA 80 (565)
T ss_pred CcCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCcCCCCcCchhhccCCcccccCCeEeCCCCCEEEccHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999 599999999998644999999999999999
Q ss_pred HHhcc-------CCEEEEeCCcCCHHHHHHHHHHHH-HhCCCccccCCCCCcchhhhhhhhhccC---CCCcccccccCe
Q psy11935 985 QKLQT-------SEVAGVVGSLADAEAMVALKDLLN-KLGSEDLYTEYAFPLEGAGTDLRANYLL---NNKIAGAEEADL 1053 (1334)
Q Consensus 985 ~~L~~-------~~i~~~~g~~~~~e~~~~~~~l~~-~lGs~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~die~ad~ 1053 (1334)
++|++ +++++++|+..+++..+++++|+. .+|++++++.+++|..+...++...+|. +.++.|+++||+
T Consensus 81 ~kl~~i~~~~G~~~i~~~~~~~~~~e~~~~~~~l~~~~~gs~~~~~~~~~c~~~~~~~~~~~~G~~~~~~~~~Di~~ad~ 160 (565)
T cd02754 81 ERFKAIQAEYGPDSVAFYGSGQLLTEEYYAANKLAKGGLGTNNIDTNSRLCMASAVAGYKRSFGADGPPGSYDDIEHADC 160 (565)
T ss_pred HHHHHHHHHhCCCeEEEEecCCccHHHHHHHHHHHHHhCCCCcccCCCcccchHHHHHHHhhccCCCCCCCHHHHhhCCE
Confidence 99996 578888888888888899999986 6999999888888876654455555542 457889999999
Q ss_pred EEEEcCCccccchhHHHHHHHHHhh-CCCeEEEEccCCCCcccccc------CCCcHHHHHHHH----------------
Q psy11935 1054 ILLIGTNPRFEAPLFNARIRKGYLT-NELDVAYIGPKVDLRYDYEH------LGESADLIKQLA---------------- 1110 (1334)
Q Consensus 1054 Il~~G~np~~~~p~~~~rir~a~~~-~g~kiivIdp~~~~t~~~a~------~Gtd~a~l~~l~---------------- 1110 (1334)
||+||+||..++|+.+.+++++.++ +|++||+|||+.+.|+..++ ||||.+++.+|+
T Consensus 161 Il~~G~n~~~s~~~~~~~~~~a~~~~~G~klividP~~t~ta~~Ad~~l~i~PGtD~al~la~~~~ii~~~~~d~~fv~~ 240 (565)
T cd02754 161 FFLIGSNMAECHPILFRRLLDRKKANPGAKIIVVDPRRTRTADIADLHLPIRPGTDLALLNGLLHVLIEEGLIDRDFIDA 240 (565)
T ss_pred EEEECCChhhhhhHHHHHHHHHHhcCCCCEEEEEcCCCCcchHHhCeeeCCCCCccHHHHHHHHHHHHHCCCcCHHHHHH
Confidence 9999999999999999999988642 39999999999999987765 999999877653
Q ss_pred ----------------------------hcHHHHHHHHhcCCCcEEEEcCCc---ccHHHHHHHHHH---HHHhhcCCCC
Q psy11935 1111 ----------------------------SGSHPFSKKLSAAKKPLIVVGADI---SDGAAVLALVQQ---LAAKVTCESD 1156 (1334)
Q Consensus 1111 ----------------------------~g~~~~A~~l~~a~~~~ii~G~~~---~~g~~~~~al~~---l~~~~g~~Gg 1156 (1334)
+.|+++|+.|+++++++|++|.|. .+|...++++.. |+|++|++|+
T Consensus 241 ~t~g~~~~~~~~~~~t~e~~a~itgv~~~~I~~lA~~~a~~~~~~i~~g~g~~~~~~g~~~~~ai~~L~~l~G~~g~~Gg 320 (565)
T cd02754 241 HTEGFEELKAFVADYTPEKVAEITGVPEADIREAARLFGEARKVMSLWTMGVNQSTQGTAANNAIINLHLATGKIGRPGS 320 (565)
T ss_pred HhccHHHHHHHHhhCCHHHHHHHHCcCHHHHHHHHHHHHhCCCEEEEeCCccccchhHHHHHHHHHHHHHHhCCCCCCCC
Confidence 125678999999999999999887 566666665554 5566666664
Q ss_pred CCCCCcccccchhhhhhhhhhhcC---------------------------------CCcc------hhhHhcCCCcEEE
Q psy11935 1157 VPCDWKVLNILQKAASQVAALDIG---------------------------------YKPG------TSAIREKPPKVLF 1197 (1334)
Q Consensus 1157 ~~~~~~~~~~l~~~~n~~G~~~~g---------------------------------~~pg------~~~i~~g~ik~l~ 1197 (1334)
+.. ++++.+|..|..++| ..+| .+++..|++|++|
T Consensus 321 g~~------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~ik~~~ 394 (565)
T cd02754 321 GPF------SLTGQPNAMGGREVGGLANLLPGHRSVNNPEHRAEVAKFWGVPEGTIPPKPGLHAVEMFEAIEDGEIKALW 394 (565)
T ss_pred CCC------cCCCCCCCCcccccccCCccCCCCcCCCCHHHHHHHHHHhCCCccccCCCCCcCHHHHHHHHhcCCceEEE
Confidence 311 111111111111000 0122 2345678999999
Q ss_pred EECCChhh------hHHhhcCCCceEEEEcCCC-ChhhccccEEecCCCCCCCCcccccCCCceEEeccccCCCCCcccH
Q psy11935 1198 LLGADEGS------ISRDDVGKDCFIIYQGHHG-DHGASIADAILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPGLARED 1270 (1334)
Q Consensus 1198 ~~g~np~~------~~~~al~k~~fvV~~d~~~-~eta~~ADvVLP~a~~~Ek~Gt~~n~egrvq~~~~av~P~gear~d 1270 (1334)
++|+||+. ...++|++++|+|++|+|+ |+|+.+||||||+++|+|++|+++|.+++++..+|+|+|+|++|+|
T Consensus 395 ~~g~Np~~~~p~~~~~~~al~k~~fvV~~d~~~~t~ta~~ADivLP~~~~~E~~~~~~~~~~~~~~~~~~i~p~ge~k~d 474 (565)
T cd02754 395 VMCTNPAVSLPNANRVREALERLEFVVVQDAFADTETAEYADLVLPAASWGEKEGTMTNSERRVSLLRAAVEPPGEARPD 474 (565)
T ss_pred EeCCCccccCcCHHHHHHHHhCCCeEEEEecccCCchhhhccEEecCCccccCCceEEcCCceEEEECCccCCccccCcH
Confidence 99999964 2467899999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q psy11935 1271 WKIIRALSEGVS 1282 (1334)
Q Consensus 1271 w~Il~~La~~lg 1282 (1334)
|+|+++||++||
T Consensus 475 ~~i~~~La~~lg 486 (565)
T cd02754 475 WWILADVARRLG 486 (565)
T ss_pred HHHHHHHHHHhC
Confidence 999999999999
No 16
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=100.00 E-value=7.2e-56 Score=536.48 Aligned_cols=364 Identities=30% Similarity=0.459 Sum_probs=298.6
Q ss_pred eeecccCCCCCceEEEeeCCEEEEecCCCCCCCCccccccccccccccc-cccccCCceEecCCCCeeecCHHHHHHHHH
Q psy11935 906 ESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGL-KRQRLLTPFVRNCDGQLVATEWEDALIAVA 984 (1334)
Q Consensus 906 ~s~c~~C~~gC~i~v~v~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l-~~~Rl~~PliR~~~g~~~~iSWdeAl~~ia 984 (1334)
+|+|++|++||++.|++++|+|+||.|++++++|.||+|+||||+++++ +|+||++||+|. +|+|++||||||++.|+
T Consensus 1 ~s~C~~C~~gC~i~v~~~~g~i~~v~~~~~~~~n~g~lC~kg~~~~~~~~~~~Rl~~Pm~R~-~g~~~~isWdeAl~~ia 79 (414)
T cd02772 1 KSVSPHDALGSNLVVHVKNNKVMRVVPRENEAINECWLSDRDRFSYEGLNSEDRLTKPMIKK-DGQWQEVDWETALEYVA 79 (414)
T ss_pred CccCCCCCCCCCeEEEEECCEEEEEEcCCCCCCCCCccCcchhhhhhcccCccccCCCeEec-CCceEEecHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999 599999999997 49999999999999999
Q ss_pred HHhcc-------CCEEEEeCCcCCHHHHHHHHHHHHHhCCCccccCCCCCcchhhhhhhhhccCCCCcccccccCeEEEE
Q psy11935 985 QKLQT-------SEVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEEADLILLI 1057 (1334)
Q Consensus 985 ~~L~~-------~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~die~ad~Il~~ 1057 (1334)
++|++ ++++++.|+..++|..+++++|++.+|++++++....+...........+..+.++.|+++||+||+|
T Consensus 80 ~~l~~i~~~~G~~~i~~~~~~~~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il~~ 159 (414)
T cd02772 80 EGLSAIIKKHGADQIGALASPHSTLEELYLLQKLARGLGSDNIDHRLRQSDFRDDAKASGAPWLGMPIAEISELDRVLVI 159 (414)
T ss_pred HHHHHHHHhcCcceEEEEecCCCCcHHHHHHHHHHHHhCCCCccCccccCccchhhhhccCCCCCCcHHHHHhCCEEEEE
Confidence 99987 57888888888999999999999999999887654333222111112222345688999999999999
Q ss_pred cCCccccchhHHHHHHHHHhhCCCeEEEEccCCCCccccccCCCcHH----HHHHHH-----------------------
Q psy11935 1058 GTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESAD----LIKQLA----------------------- 1110 (1334)
Q Consensus 1058 G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~~~t~~~a~~Gtd~a----~l~~l~----------------------- 1110 (1334)
|+||..++|+++.+++++. ++|++|++|||+.+.+.. ..||+|.. ++..+.
T Consensus 160 G~n~~~~~p~~~~~l~~a~-~~g~k~i~idp~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~ 237 (414)
T cd02772 160 GSNLRKEHPLLAQRLRQAV-KKGAKLSAINPADDDFLF-PLSGKAIVAPSALANALAQVAKALAEEKGLAVPDEDAKVEA 237 (414)
T ss_pred CCCccccchHHHHHHHHHH-HcCCEEEEEeCccchhhc-ccccccccCcHHHHHHHHHHHHHHHHhcCcCChHHHhcCCC
Confidence 9999999999999999986 579999999998765432 24666652 221110
Q ss_pred -hcHHHHHHHHhcCCCcEEEEcCCc---ccHHHHHHHHHHHHHhhcCCCCCCCCCcccccchhhhhhhhhhhcCCCcc--
Q psy11935 1111 -SGSHPFSKKLSAAKKPLIVVGADI---SDGAAVLALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAALDIGYKPG-- 1184 (1334)
Q Consensus 1111 -~g~~~~A~~l~~a~~~~ii~G~~~---~~g~~~~~al~~l~~~~g~~Gg~~~~~~~~~~l~~~~n~~G~~~~g~~pg-- 1184 (1334)
+.+.++|+.|+.+++++|++|.+. .++..+.+++..|...+|... +.+.+.+|..|+..+|..|.
T Consensus 238 ~~~i~~~a~~l~~a~~~~i~~G~g~~~~~~~~~~~~~i~~L~~~tg~~~---------~~~~~~~n~~g~~~~g~~p~~~ 308 (414)
T cd02772 238 SEEARKIAASLVSAERAAVFLGNLAQNHPQAATLRALAQEIAKLTGATL---------GVLGEGANSVGAYLAGALPHGG 308 (414)
T ss_pred HHHHHHHHHHHhcCCCeEEEEccchhcCcchHHHHHHHHHHHHHHCcCc---------cCCCCccchHHHHHhCCCCCCC
Confidence 246788999999999999999888 566666666677766666421 12223345556666666552
Q ss_pred --hhhHhcCCCcEEEEECCChhh------hHHhhcCCCceEEEEcCCCChhhcc-ccEEecCCCCCCCCcccccCCCceE
Q psy11935 1185 --TSAIREKPPKVLFLLGADEGS------ISRDDVGKDCFIIYQGHHGDHGASI-ADAILPGAAYTEKQSTYVNTEGRAQ 1255 (1334)
Q Consensus 1185 --~~~i~~g~ik~l~~~g~np~~------~~~~al~k~~fvV~~d~~~~eta~~-ADvVLP~a~~~Ek~Gt~~n~egrvq 1255 (1334)
...+..+.++++|++|+||+. ...++|.+++|+|++|+|+|+|+.+ ||||||+++|+|++|+|+|.+|++|
T Consensus 309 ~~~~~~~~~~~~~~~v~~~np~~~~p~~~~~~~al~k~~f~V~~d~~~t~ta~~~ADvvLP~~~~~E~~g~~~~~~~~~~ 388 (414)
T cd02772 309 LNAAAMLEQPRKAYLLLNVEPELDCANPAQALAALNQAEFVVALSAFASAALLDYADVLLPIAPFTETSGTFVNLEGRVQ 388 (414)
T ss_pred CCHHHHhcccCCEEEEeCCCccccCCCHHHHHHHHhcCCEEEEEeccCCcchhhcCCEEecCCccccCCcCeECCCCcEE
Confidence 345667789999999999964 2477899999999999999999996 9999999999999999999999999
Q ss_pred EeccccCCCCCcccHHHHHHHHHHHh
Q psy11935 1256 QTLTAVTPPGLAREDWKIIRALSEGV 1281 (1334)
Q Consensus 1256 ~~~~av~P~gear~dw~Il~~La~~l 1281 (1334)
..+|+++|+|++|+||+|+.+||..+
T Consensus 389 ~~~~~v~p~ge~r~d~~i~~~La~~~ 414 (414)
T cd02772 389 SFKGVVKPLGEARPAWKVLRVLGNLL 414 (414)
T ss_pred eeccccCCCcccchHHHHHHHHHhhC
Confidence 99999999999999999999999753
No 17
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=100.00 E-value=1.2e-55 Score=543.39 Aligned_cols=347 Identities=20% Similarity=0.272 Sum_probs=288.9
Q ss_pred eeeccc-CCCCCceEEEeeCCEEEEecCCCCCCCCccccccccccccccc-cccccCCceEecCC--CCeeecCHHHHHH
Q psy11935 906 ESVDVL-DAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGL-KRQRLLTPFVRNCD--GQLVATEWEDALI 981 (1334)
Q Consensus 906 ~s~c~~-C~~gC~i~v~v~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l-~~~Rl~~PliR~~~--g~~~~iSWdeAl~ 981 (1334)
.|+|++ |+.||++.|++++|+|++|.|++++|+|+|++|+||+++++.+ +|+||++||+|.+. |+|++|||||||+
T Consensus 1 ~t~C~~~C~~~C~i~v~v~~g~i~~v~g~~~~p~n~g~lC~kG~~~~~~~~~pdRl~~Pl~R~g~rgg~~~~isWdeAl~ 80 (501)
T cd02766 1 RSVCPLDCPDTCSLLVTVEDGRIVRVEGDPAHPYTRGFICAKGARYVERVYSPDRLLTPLKRVGRKGGQWERISWDEALD 80 (501)
T ss_pred CCcCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCeeCcchhccHhhhcChhhhccceeecCCCCCceEEecHHHHHH
Confidence 378998 9999999999999999999999999999999999999999998 59999999999853 5999999999999
Q ss_pred HHHHHhcc-------CCEEEEeCCcC--CHHHHHHHHHHHHHhCCCccccCCCCCcchhhhhhhhhccC--CCCcccccc
Q psy11935 982 AVAQKLQT-------SEVAGVVGSLA--DAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLL--NNKIAGAEE 1050 (1334)
Q Consensus 982 ~ia~~L~~-------~~i~~~~g~~~--~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~die~ 1050 (1334)
.||++|++ ++++++.++.. ..+..+ .++|++.+|++|++ .++|+.+...++..++|. +.++.|+++
T Consensus 81 ~ia~~l~~i~~~~G~~si~~~~~~g~~~~~~~~~-~~~~~~~~Gs~~~~--~~~c~~~~~~~~~~~~G~~~~~~~~d~~~ 157 (501)
T cd02766 81 TIAAKLKEIKAEYGPESILPYSYAGTMGLLQRAA-RGRFFHALGASELR--GTICSGAGIEAQKYDFGASLGNDPEDMVN 157 (501)
T ss_pred HHHHHHHHHHHhhCCcEEEEecccCCccccchHH-HHHHHHhCCCCCCC--CCccHHHHHHHHHhhcCCCCCCCHHHHhc
Confidence 99999997 56766554332 223333 37888999999876 367876655555555543 457889999
Q ss_pred cCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCCCCcccccc------CCCcHHHHHHHH--------------
Q psy11935 1051 ADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEH------LGESADLIKQLA-------------- 1110 (1334)
Q Consensus 1051 ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~~~t~~~a~------~Gtd~a~l~~l~-------------- 1110 (1334)
||+||+||+||.+++|+.+.+++++. ++|+|||||||+.+.|+..++ ||||.+++.+|+
T Consensus 158 ad~il~~G~Np~~s~p~~~~~~~~a~-~~GaklivvDPr~t~ta~~Ad~~l~i~PGtD~al~~al~~~ii~~~~~d~~fv 236 (501)
T cd02766 158 ADLIVIWGINPAATNIHLMRIIQEAR-KRGAKVVVIDPYRTATAARADLHIQIRPGTDGALALGVAKVLFREGLYDRDFL 236 (501)
T ss_pred CCEEEEECCChhhhchhHHHHHHHHH-HCCCEEEEECCCCCccHHHhCeeeccCCCcHHHHHHHHHHHHHHCCCccHHHH
Confidence 99999999999999999989998875 689999999999999987765 999999877653
Q ss_pred ------------------------------hcHHHHHHHHhcCCCcEEEEcCCc---ccHHHHHHHHHHHH---HhhcCC
Q psy11935 1111 ------------------------------SGSHPFSKKLSAAKKPLIVVGADI---SDGAAVLALVQQLA---AKVTCE 1154 (1334)
Q Consensus 1111 ------------------------------~g~~~~A~~l~~a~~~~ii~G~~~---~~g~~~~~al~~l~---~~~g~~ 1154 (1334)
+.|.++|+.|+.+++++|++|.|+ .+|....+++..|+ |++|++
T Consensus 237 ~~~t~gf~~~~~~v~~~t~e~~~~~tgv~~~~I~~~A~~~a~~~~~~i~~g~g~~~~~~g~~~~~ai~~L~~ltG~~g~~ 316 (501)
T cd02766 237 ARHTEGFEELKAHLETYTPEWAAEITGVSAEEIEELARLYGEAKPPSIRLGYGMQRYRNGGQNVRAIDALPALTGNIGVP 316 (501)
T ss_pred HHhcCCHHHHHHHHhhCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEEecchhhhccchHHHHHHHHHHHHHhCCCCCC
Confidence 115678999999999999999987 67777766665555 555555
Q ss_pred CCCCCCCcccccchhhhhhhhhhhcCCCcchhhHhcCCCcEEEEECCChhhh------HHh-hcCCCceEEEEcCCCChh
Q psy11935 1155 SDVPCDWKVLNILQKAASQVAALDIGYKPGTSAIREKPPKVLFLLGADEGSI------SRD-DVGKDCFIIYQGHHGDHG 1227 (1334)
Q Consensus 1155 Gg~~~~~~~~~~l~~~~n~~G~~~~g~~pg~~~i~~g~ik~l~~~g~np~~~------~~~-al~k~~fvV~~d~~~~et 1227 (1334)
|++ +.+.. + .+++|++|++|+||+.. ..+ +|++++|+|++|+|+|+|
T Consensus 317 G~g------~~~~~---------------~-----~~~ik~l~~~g~Np~~~~p~~~~~~~a~l~~~~f~Vv~D~~~teT 370 (501)
T cd02766 317 GGG------AFYSN---------------S-----GPPVKALWVYNSNPVAQAPDSNKVRKGLAREDLFVVVHDQFMTDT 370 (501)
T ss_pred CCc------ccCCC---------------C-----CCCeeEEEEeCCCHHhhCCCHHHHHHHHhcCCCeEEEEecCcCch
Confidence 431 11110 0 16799999999999642 355 788999999999999999
Q ss_pred hccccEEecCCCCCCCCcccccC-CCceEEeccccCCCCCcccHHHHHHHHHHHhc
Q psy11935 1228 ASIADAILPGAAYTEKQSTYVNT-EGRAQQTLTAVTPPGLAREDWKIIRALSEGVS 1282 (1334)
Q Consensus 1228 a~~ADvVLP~a~~~Ek~Gt~~n~-egrvq~~~~av~P~gear~dw~Il~~La~~lg 1282 (1334)
+.+||||||+++|+|++|+++|. +++++..+|+|+|+|++|+||+|+.+||++||
T Consensus 371 a~~ADvVLP~a~~~E~~~~~~~~~~~~~~~~~~~v~p~ge~~~d~~I~~~La~~lg 426 (501)
T cd02766 371 ARYADIVLPATTFLEHEDVYASYWHYYLQYNEPAIPPPGEARSNTEIFRELAKRLG 426 (501)
T ss_pred HhhccEeecccCcccccccccccCcceEEecccccCCCccCcCHHHHHHHHHHHcC
Confidence 99999999999999999999986 57899999999999999999999999999999
No 18
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=2.2e-55 Score=546.54 Aligned_cols=367 Identities=26% Similarity=0.402 Sum_probs=309.4
Q ss_pred eeecccCCCCCceEEEeeCCEEEEecCCCCCCCCccccccccccccccc-cccccCCceEecCCCCeeecCHHHHHHHHH
Q psy11935 906 ESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGL-KRQRLLTPFVRNCDGQLVATEWEDALIAVA 984 (1334)
Q Consensus 906 ~s~c~~C~~gC~i~v~v~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l-~~~Rl~~PliR~~~g~~~~iSWdeAl~~ia 984 (1334)
+|+|++|+.||++.|++++|+|+||+|++++|+|+|++|+||+++++.+ +|+||++||+|.+ |+|++||||||++.||
T Consensus 1 ~t~C~~C~~~C~i~v~v~~g~v~ri~g~~~~p~n~g~~C~kG~~~~~~~y~p~Rl~~Pl~R~~-~~~~~isWdeAl~~ia 79 (512)
T cd02753 1 KTVCPYCGVGCGLELWVKDNKIVGVEPVKGHPVNRGKLCVKGRFGFDFVNSKDRLTKPLIRKN-GKFVEASWDEALSLVA 79 (512)
T ss_pred CccCCCCCCCCCEEEEEECCeEEEeecCCCCCCCCCccccchhhHhhhccCccccCCCEECCC-CCEEEecHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999998 5999999999985 8999999999999999
Q ss_pred HHhcc-------CCEEEEeCCcCCHHHHHHHHHHHHHhCC-CccccCCCCCcchhhhhhhhhcc---CCCCcccccccCe
Q psy11935 985 QKLQT-------SEVAGVVGSLADAEAMVALKDLLNKLGS-EDLYTEYAFPLEGAGTDLRANYL---LNNKIAGAEEADL 1053 (1334)
Q Consensus 985 ~~L~~-------~~i~~~~g~~~~~e~~~~~~~l~~~lGs-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~die~ad~ 1053 (1334)
++|++ +++++++|+..+++..+++++|++.+|+ +++++....|..+...++...+| .+.++.|+++||+
T Consensus 80 ~~l~~~~~~~g~~~v~~~~~~~~~~e~~~~~~~~~~~~g~s~~~~~~~~~c~~~~~~~~~~~~G~~~~~~~~~d~~~ad~ 159 (512)
T cd02753 80 SRLKEIKDKYGPDAIAFFGSAKCTNEENYLFQKLARAVGGTNNVDHCARLCHSPTVAGLAETLGSGAMTNSIADIEEADV 159 (512)
T ss_pred HHHHHHHHhhCCCeEEEEecCCCCcHHHHHHHHHHHHhcCCCccCCCcccccchhhHHHHhhcCCCCCCCCHHHHHhCCE
Confidence 99986 5688888888888888999999986664 67777667776544334443443 3467899999999
Q ss_pred EEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCCCCcccccc------CCCcHHHHHHHH-----------------
Q psy11935 1054 ILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEH------LGESADLIKQLA----------------- 1110 (1334)
Q Consensus 1054 Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~~~t~~~a~------~Gtd~a~l~~l~----------------- 1110 (1334)
||+||+||..++|++..+++++. ++|++||+|||+.+.|+..++ ||+|.+++.+++
T Consensus 160 il~~G~n~~~~~~~~~~~i~~a~-~~G~k~i~Idp~~s~ta~~Ad~~l~i~PGtD~al~lal~~~l~~~~~~d~~fv~~~ 238 (512)
T cd02753 160 ILVIGSNTTEAHPVIARRIKRAK-RNGAKLIVADPRRTELARFADLHLQLRPGTDVALLNAMAHVIIEEGLYDEEFIEER 238 (512)
T ss_pred EEEECCChhhhhHHHHHHHHHHH-HCCCeEEEEcCCCccchHhhCeeeCCCCCcHHHHHHHHHHHHHHCCCcCHHHHHHH
Confidence 99999999999999999999986 689999999999999987765 899999876653
Q ss_pred ---------------------------hcHHHHHHHHhcCCCcEEEEcCCc---ccHHHHHHHHHHHH---HhhcCCCCC
Q psy11935 1111 ---------------------------SGSHPFSKKLSAAKKPLIVVGADI---SDGAAVLALVQQLA---AKVTCESDV 1157 (1334)
Q Consensus 1111 ---------------------------~g~~~~A~~l~~a~~~~ii~G~~~---~~g~~~~~al~~l~---~~~g~~Gg~ 1157 (1334)
+.++++|+.|+++++++|++|.+. .+|....+++..|+ |++|++|+
T Consensus 239 t~gf~~~~~~~~~~t~e~~~~~~gv~~~~i~~lA~~~~~~~~~~i~~g~g~~~~~~g~~~~~a~~~L~~l~G~~~~~G~- 317 (512)
T cd02753 239 TEGFEELKEIVEKYTPEYAERITGVPAEDIREAARMYATAKSAAILWGMGVTQHSHGTDNVMALSNLALLTGNIGRPGT- 317 (512)
T ss_pred hhhHHHHHHHHHhCCHHHHHHHhCcCHHHHHHHHHHHHhCCCeEEEeCchhhhhhhHHHHHHHHHHHHHHhCCCCCCCC-
Confidence 114678999999999999999987 56666666655555 45555553
Q ss_pred CCCCcccccchhhhhhhhhhhcCCCcchhhHhcCCCcEEEEECCChhhh------HHhhcCCCceEEEEcCCCChhhccc
Q psy11935 1158 PCDWKVLNILQKAASQVAALDIGYKPGTSAIREKPPKVLFLLGADEGSI------SRDDVGKDCFIIYQGHHGDHGASIA 1231 (1334)
Q Consensus 1158 ~~~~~~~~~l~~~~n~~G~~~~g~~pg~~~i~~g~ik~l~~~g~np~~~------~~~al~k~~fvV~~d~~~~eta~~A 1231 (1334)
++.++++..+..|+.++|..|. +..|.++++|++|.||+.. +.++|++++|+|++|+|+|+|+.+|
T Consensus 318 -----~~~~~~~~~~~~g~~~~~~~~~---~~~~~i~~l~~~~~Np~~~~p~~~~~~~al~~~~~~V~~d~~~t~ta~~A 389 (512)
T cd02753 318 -----GVNPLRGQNNVQGACDMGALPN---VLPGYVKALYIMGENPALSDPNTNHVRKALESLEFLVVQDIFLTETAELA 389 (512)
T ss_pred -----CcCccCCCCCCCCCcccccCCc---cCCceeEEEEEecCChhhcCcCHHHHHHHHhCCCeEEEEecccCcchhhh
Confidence 2334444455566666655443 2344599999999999642 4688999999999999999999999
Q ss_pred cEEecCCCCCCCCcccccCCCceEEeccccCCCCCcccHHHHHHHHHHHhcC
Q psy11935 1232 DAILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPGLAREDWKIIRALSEGVSS 1283 (1334)
Q Consensus 1232 DvVLP~a~~~Ek~Gt~~n~egrvq~~~~av~P~gear~dw~Il~~La~~lg~ 1283 (1334)
|||||+++|+|++|+|+|.+|+++..+|+|+|+|++|+||+|+..||++||.
T Consensus 390 DvvLP~~~~~E~~~~~~~~~~~~~~~~~~i~p~ge~~~~~~i~~~La~~lg~ 441 (512)
T cd02753 390 DVVLPAASFAEKDGTFTNTERRVQRVRKAVEPPGEARPDWEIIQELANRLGY 441 (512)
T ss_pred hEEecCCccCccCeeEECCCCeEEeeccccCCccccCCHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999994
No 19
>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups in this domain
Probab=100.00 E-value=2.5e-55 Score=540.52 Aligned_cols=370 Identities=28% Similarity=0.415 Sum_probs=311.8
Q ss_pred eeecccCCCCCceEEEeeCCEEEEecCCCCCCCCccccccccccccccc-cccccCCceEecCCCCeeecCHHHHHHHHH
Q psy11935 906 ESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGL-KRQRLLTPFVRNCDGQLVATEWEDALIAVA 984 (1334)
Q Consensus 906 ~s~c~~C~~gC~i~v~v~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l-~~~Rl~~PliR~~~g~~~~iSWdeAl~~ia 984 (1334)
+|+|++|+.||+|.|+++||+|+||+|++++++|+|++|+||||+++.+ +|+||++||+|.+ |+|++|||||||+.||
T Consensus 1 ~s~C~~C~~gC~i~v~v~dg~v~rv~~~~~~~~n~g~lC~kG~~~~~~~~~~~Rl~~Pl~R~~-g~~~~isWdeAl~~ia 79 (472)
T cd02771 1 PSICHHCSVGCNISLGERYGELRRVENRYNGAVNHYFLCDRGRFGYGYVNSRDRLTQPLIRRG-GTLVPVSWNEALDVAA 79 (472)
T ss_pred CCcCcCcccCCCcEEEEECCEEEEEECCCCCCCCCcccchhhhcccccccCCcccCCCceecC-CceeEecHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999 5999999999985 8999999999999999
Q ss_pred HHhcc--CCEEEEeCCcCCHHHHHHHHHHHH-HhCCCccccCCCCCcchhhhhhhhhccCCCCcccccccCeEEEEcCCc
Q psy11935 985 QKLQT--SEVAGVVGSLADAEAMVALKDLLN-KLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNP 1061 (1334)
Q Consensus 985 ~~L~~--~~i~~~~g~~~~~e~~~~~~~l~~-~lGs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~die~ad~Il~~G~np 1061 (1334)
++|++ +++++++++..++|..+++++|++ .+|++++++....+.. ..+...+..+.++.|+++||+||+||+||
T Consensus 80 ~~l~~~~~~~~~~~s~~~~~e~~~~~~~~~~~~~gs~~~~~~~~~~~~---~~~~~~~~~~~~~~di~~ad~il~~G~n~ 156 (472)
T cd02771 80 ARLKEAKDKVGGIGSPRASNESNYALQKLVGAVLGTNNVDHRARRLIA---EILRNGPIYIPSLRDIESADAVLVLGEDL 156 (472)
T ss_pred HHHHHhhhhEEEEecCCCChHHHHHHHHHHHHhcCCChhhcchhhhhh---hhhcccCCCCCCHHHHHhCCEEEEEeCCc
Confidence 99998 688888888899999999999997 5999887654332221 11111233466889999999999999999
Q ss_pred cccchhHHHHHHHHHhhC-------------------------CCeEEEEccCCCCccccc------cCCCcHHHHHHHH
Q psy11935 1062 RFEAPLFNARIRKGYLTN-------------------------ELDVAYIGPKVDLRYDYE------HLGESADLIKQLA 1110 (1334)
Q Consensus 1062 ~~~~p~~~~rir~a~~~~-------------------------g~kiivIdp~~~~t~~~a------~~Gtd~a~l~~l~ 1110 (1334)
..++|+++.+++++.+++ |+++++|||+.+.+...+ .||++.+++.++.
T Consensus 157 ~~~~p~~~~~~~~a~~~~~~~~v~~~~~~~~a~~a~~~~~~~pg~~~~~i~~~~~~~~~~ad~~~~~~pg~~~al~~~l~ 236 (472)
T cd02771 157 TQTAPRIALALRQAARRKAVELAALSGIPKWQDAAVRNIAQGAKSPLFIVNALATRLDDIAAESIRASPGGQARLGAALA 236 (472)
T ss_pred cccchHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcccCCCCceEEeechhhhhhhhhhhhhhhCcCCHHHHHHHHH
Confidence 999999999999987777 788888888877665443 3899988876653
Q ss_pred ----------------hcHHHHHHHHhcCCCcEEEEcCCcccHHHHHHHHHHHHHhhcCCCCCCCCCcccccchhhhhhh
Q psy11935 1111 ----------------SGSHPFSKKLSAAKKPLIVVGADISDGAAVLALVQQLAAKVTCESDVPCDWKVLNILQKAASQV 1174 (1334)
Q Consensus 1111 ----------------~g~~~~A~~l~~a~~~~ii~G~~~~~g~~~~~al~~l~~~~g~~Gg~~~~~~~~~~l~~~~n~~ 1174 (1334)
+.+.++|+.|+.+++++|++|.+. ++...+.++..|+..+|..| .. .++.+++..+|..
T Consensus 237 ~~~~~~~~~~~gv~~~~~i~~lA~~l~~a~~~~i~~g~g~-~~~~~~~al~~L~~~~G~~g-~g---~g~~~~~~~~n~~ 311 (472)
T cd02771 237 RAVDASAAGVSGLAPKEKAARIAARLTGAKKPLIVSGTLS-GSLELIKAAANLAKALKRRG-EN---AGLTLAVEEGNSP 311 (472)
T ss_pred hhChhhhhhccCCChHHHHHHHHHHHhcCCCcEEEECCCc-CcHHHHHHHHHHHHHhcCCC-CC---cceeeccccccch
Confidence 235689999999999999999987 66678888888888888775 11 2244444555666
Q ss_pred hhhhcCCC---cc------hhhHhcCCCcEEEEECCChhhh-----HHhhcCCCceEEEEcCCCChhhccccEEecCCCC
Q psy11935 1175 AALDIGYK---PG------TSAIREKPPKVLFLLGADEGSI-----SRDDVGKDCFIIYQGHHGDHGASIADAILPGAAY 1240 (1334)
Q Consensus 1175 G~~~~g~~---pg------~~~i~~g~ik~l~~~g~np~~~-----~~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~ 1240 (1334)
|..++|.. |+ .+.+..|++|++|++|.||+.. ..++|.+++|+|++|+|+|+|+.+||||||+++|
T Consensus 312 g~~~~~~~~~~~~~~~~~~~~~i~~g~ik~l~~~g~np~~~~p~~~~~~al~~~~~~V~~d~~~t~ta~~ADvvLP~~~~ 391 (472)
T cd02771 312 GLLLLGGHVTEPGLDLDGALAALEDGSADALIVLGNDLYRSAPERRVEAALDAAEFVVVLDHFLTETAERADVVLPAASF 391 (472)
T ss_pred hhhhcCCCCCCCCCCHHHHHHHHhcCCceEEEEeccCcccCCChHHHHHHHhcCCeEEEEecCCChhHHhCCEEeccCcc
Confidence 77666542 23 3456789999999999999542 3678999999999999999999999999999999
Q ss_pred CCCCcccccCCCceEEecccc-CCCCCcccHHHHHHHHHHHhcCC
Q psy11935 1241 TEKQSTYVNTEGRAQQTLTAV-TPPGLAREDWKIIRALSEGVSSN 1284 (1334)
Q Consensus 1241 ~Ek~Gt~~n~egrvq~~~~av-~P~gear~dw~Il~~La~~lg~~ 1284 (1334)
+|++|+|+|.+|++|.+++++ +|+|++|+||+|++.|+++||..
T Consensus 392 ~E~~g~~~~~~~~~~~~~~~i~~p~ge~k~d~~I~~~La~rlg~~ 436 (472)
T cd02771 392 AEKSGTFVNYEGRAQRFFKAYDDPAGDARSDWRWLHALAAKLGGK 436 (472)
T ss_pred cccCCcEEccCCeEEEeeecccCCCccCchHHHHHHHHHHHhCCC
Confidence 999999999999999999999 99999999999999999999953
No 20
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=100.00 E-value=4.7e-55 Score=570.10 Aligned_cols=400 Identities=19% Similarity=0.179 Sum_probs=313.1
Q ss_pred cccccccccccccCCcccC--------CCCcceeeeeecccCCCCCceEEEeeCCEEEEecCC-------CCCCCCcccc
Q psy11935 879 VIDLCPVGALTSKPYSFTA--------RPWETRKTESVDVLDAVGSNIIVSTRTGEVLRVLPR-------LNEDINEEWL 943 (1334)
Q Consensus 879 cv~~CpvGAl~~k~~~~~~--------r~we~~~~~s~c~~C~~gC~i~v~v~~g~v~ri~p~-------~~~~vn~g~l 943 (1334)
+-.+||||||+ ++|.|.+ |+|++..+.|+|++|+.||++.++|+||+|+||+|+ ++++.+++++
T Consensus 26 ~~~~~pvga~~-~~~~~~~~e~~yr~~~~wd~~~~~t~c~~C~~gC~l~v~V~dG~vvrv~~~~~~p~~~~~~~~~~g~~ 104 (912)
T TIGR03479 26 FGFLKPIQDPL-KAYPYRDWEDLYRKEWTWDKVGRGAHLNNCTGSCAFYVYVKNGIVWREEQSADYPQCNPDIPDYNPRG 104 (912)
T ss_pred hcccccccccc-ccCCCchHHHHhhhhhcccceeccccCCCccCCCCeEEEEECCEEEEEeccccCCCCCCCCCCCCCCc
Confidence 67899999999 8888877 999999999999999999999999999999999864 4446788999
Q ss_pred ccccccccccc-cccccCCceEecC---CCCeeecCHHHHHHHHHHHhcc-------CCEEEEeC-CcCCHHHHHHHHHH
Q psy11935 944 ADKGRFAYDGL-KRQRLLTPFVRNC---DGQLVATEWEDALIAVAQKLQT-------SEVAGVVG-SLADAEAMVALKDL 1011 (1334)
Q Consensus 944 C~kgr~~~~~l-~~~Rl~~PliR~~---~g~~~~iSWdeAl~~ia~~L~~-------~~i~~~~g-~~~~~e~~~~~~~l 1011 (1334)
|+||++.++.+ +|+||++||+|++ +|+|++|||||||+.||++|++ ++|+++++ +..+.+...+..+|
T Consensus 105 C~KG~~~~~~~y~p~Rl~~Pl~R~g~RG~G~~~~iSWdEAld~IA~kl~~i~~~~Gp~si~~~~~~~~~~~~~~~~~~r~ 184 (912)
T TIGR03479 105 CQKGACYNNYMYGDDRLKYPLKRVGERGEGKWKRISWDEALTEIADKIIDTFEAQGPDGISLDTPHPHMAPISFAAGSRF 184 (912)
T ss_pred CccchhhhhhhcCcccccCceeecCCCCCCceEEeCHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCchhhHHHHHHHHH
Confidence 99999999998 6999999999974 6899999999999999999976 67877744 44566666778899
Q ss_pred HHHhCCCccccCCCCCcchhhhhhhhhcc---CCCCcccccccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEcc
Q psy11935 1012 LNKLGSEDLYTEYAFPLEGAGTDLRANYL---LNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 1088 (1334)
Q Consensus 1012 ~~~lGs~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~die~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp 1088 (1334)
++.+|+.++++....+ ....+....+| .+.++.|+++||+||+||+||..++|..+.+++++. ++|+|||||||
T Consensus 185 ~~~lG~~~~~~~~~~~--~~~~~~~~~~G~~~~~~~~~D~~na~~Il~~G~Np~~t~~~~~~~l~~a~-~~GaklVvIdP 261 (912)
T TIGR03479 185 ANLIGGVSPDIFDDYG--DLYTGAFHTFGKAHDSATSDDWFNADYIIMWGSNPSVTRIPDAHFLSEAR-YNGARVVSIAP 261 (912)
T ss_pred HHHcCCCccccccccC--CCCCcccceeccCccCCchhhhhcCcEEEEecCChHHcCCchHHHHHHHH-hcCCeEEEECC
Confidence 9999998765433221 11122222232 346789999999999999999999999999999885 68999999999
Q ss_pred CCCCcccccc------CCCcHHHHHHHH------------------h---------------------------------
Q psy11935 1089 KVDLRYDYEH------LGESADLIKQLA------------------S--------------------------------- 1111 (1334)
Q Consensus 1089 ~~~~t~~~a~------~Gtd~a~l~~l~------------------~--------------------------------- 1111 (1334)
+++.|+..+| ||||++|+.+|+ .
T Consensus 262 r~t~tA~~AD~wlpirPGTD~ALalam~~vIi~e~l~D~~fv~~~T~~p~LV~~d~g~~lr~~d~~~~~~~~~~~v~d~~ 341 (912)
T TIGR03479 262 DYNPSTIHADLWLPVRVGTDAALALGMVQVIIDEKLYDAAFLKEQTDLPLLVRMDTGKFLREADVEAGGSDKVFYIWDSK 341 (912)
T ss_pred CCChhhhhCCeecCCCCCcHHHHHHHHHHHHHHcCcccHHHHHHhCCCceEEEcCCCceeeHHhcCccCCCCceEEEECC
Confidence 9999998876 899999876553 0
Q ss_pred ----------------------------c-------------------------------------------HHHHHHHH
Q psy11935 1112 ----------------------------G-------------------------------------------SHPFSKKL 1120 (1334)
Q Consensus 1112 ----------------------------g-------------------------------------------~~~~A~~l 1120 (1334)
| |+++|+.|
T Consensus 342 ~~~~~~~~~~~g~~~~~~~~~~~~p~l~G~~~v~~~~g~~~~~~t~f~~l~~~~~~yTpe~aa~itGVpae~I~~lAr~~ 421 (912)
T TIGR03479 342 TGKAVKAKGSMGSEDKTLKLDDFDPALEGTFEARLKNGNTIQVRTVFEGLRAELADYTPEKAAAITGVPPSVIRELAREF 421 (912)
T ss_pred CCCcccCCCcccccccccccccCCccccCceeEeccCCCeeeeecHHHHHHHHhcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 1 34689999
Q ss_pred hcCCCcEEEEcCCc---ccHHHHHHH---HHHHHHhhcCCCCCCCCCcccc---cchh--------h---hhh--hhhhh
Q psy11935 1121 SAAKKPLIVVGADI---SDGAAVLAL---VQQLAAKVTCESDVPCDWKVLN---ILQK--------A---ASQ--VAALD 1178 (1334)
Q Consensus 1121 ~~a~~~~ii~G~~~---~~g~~~~~a---l~~l~~~~g~~Gg~~~~~~~~~---~l~~--------~---~n~--~G~~~ 1178 (1334)
+.+++++|++|.|. .+|....++ |..|+|++|++||+.+.+.+.. ..++ . ... .+...
T Consensus 422 a~~~~~~i~~g~G~~~~~~g~~~~rai~~L~~LtGniG~~Ggg~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 501 (912)
T TIGR03479 422 AKAKKASIITGFNSAKWYHGDLMERALFLLLALTGNWGKTGTGDTHYIGQDKNWVLPGVKALAFPTLKAPTRTDEMGVPT 501 (912)
T ss_pred HhcCceEEEeccccccccccHHHHHHHHHHHHHhCCCCCCCCccccccccccccccccccccccccccCCchhhhccCCc
Confidence 99999999999988 566655554 5556677777776432221100 0000 0 000 00000
Q ss_pred --cC----------CCcch--------hhHhc----------CCCcEEEEECCChhhh------HHh-hcCCCceEEEEc
Q psy11935 1179 --IG----------YKPGT--------SAIRE----------KPPKVLFLLGADEGSI------SRD-DVGKDCFIIYQG 1221 (1334)
Q Consensus 1179 --~g----------~~pg~--------~~i~~----------g~ik~l~~~g~np~~~------~~~-al~k~~fvV~~d 1221 (1334)
.+ ..|+. +++.. ++||++|++|+||+.. ..+ +|++++|+|++|
T Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~p~~p~~~~~ik~l~~~~~Np~~~~~~~~~~~~~~l~kldfiV~~D 581 (912)
T TIGR03479 502 TVWTYYHAGNLKAWTGPGLDETGAYLDESIDKGWMPNYPRDGKDPKVYIVLRGNPFRRAKGAKAVRENLLPKLELIVDIN 581 (912)
T ss_pred cceeeeeccchhhhcCCccccHHHHHHHHHhcCCCccccccCCCCeEEEEeCCCccccCccHHHHHHHHHccCCEEEEec
Confidence 00 01221 12332 4699999999999642 344 489999999999
Q ss_pred CCCChhhccccEEecCCCCCCCCc-ccccCCCceEEeccccCCCCCcccHHHHHHHHHHHhc
Q psy11935 1222 HHGDHGASIADAILPGAAYTEKQS-TYVNTEGRAQQTLTAVTPPGLAREDWKIIRALSEGVS 1282 (1334)
Q Consensus 1222 ~~~~eta~~ADvVLP~a~~~Ek~G-t~~n~egrvq~~~~av~P~gear~dw~Il~~La~~lg 1282 (1334)
+|||+||.|||||||+++|+|+++ ++++.+++++.++|+|+|+||+|+||+|++.||++||
T Consensus 582 ~~mt~Ta~~ADiVLPaat~~E~~d~~~~~~~~~v~~~~~av~P~geak~D~~I~~~LA~rlg 643 (912)
T TIGR03479 582 FRMDSTAMYADIVLPAAWHYEKHDLRTTSGHRFINFFDRPVKPMGESKTDWQIFALLAKKIQ 643 (912)
T ss_pred cccCCCcccCCEEccCCCcccccCCEeccCCceeEEeccccCCCCCCccHHHHHHHHHHHHH
Confidence 999999999999999999999987 5677888999999999999999999999999999998
No 21
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=6.2e-55 Score=536.02 Aligned_cols=348 Identities=20% Similarity=0.223 Sum_probs=294.7
Q ss_pred eeecccCCCCCceEEEeeCCEEEEecCCCCCCCCccccccccccccccc-cccccCCceEecC---CCCeeecCHHHHHH
Q psy11935 906 ESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGL-KRQRLLTPFVRNC---DGQLVATEWEDALI 981 (1334)
Q Consensus 906 ~s~c~~C~~gC~i~v~v~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l-~~~Rl~~PliR~~---~g~~~~iSWdeAl~ 981 (1334)
.|+|++|+.||++.|+|++|+|+||.|++++|+|+|++|+||+++++.+ +|+||++||+|++ +|+|++||||||++
T Consensus 1 ~t~C~~C~~~C~l~v~v~~g~v~~v~g~~~~p~n~g~~C~kG~~~~~~~y~pdRl~~Pl~R~g~rG~g~~~~isWdeAl~ 80 (477)
T cd02759 1 KGTCPGCHSGCGVLVYVKDGKLVKVEGDPNHPTNKGRLCMRGLAAPEIVYHPDRLLYPLKRVGERGENKWERISWDEALD 80 (477)
T ss_pred CccCcCCcCCCCEEEEEECCEEEEEEcCCCCCCCCCccCccccchHhhhcCchhhccCceecCCCCCCcEEEecHHHHHH
Confidence 3799999999999999999999999999999999999999999999998 6999999999973 68999999999999
Q ss_pred HHHHHhcc-------CCEEEEeC-CcCCHHHHHHHH-HHHHHhCCCccccCCCCCcchhhhhhhhh--ccCCCCcccccc
Q psy11935 982 AVAQKLQT-------SEVAGVVG-SLADAEAMVALK-DLLNKLGSEDLYTEYAFPLEGAGTDLRAN--YLLNNKIAGAEE 1050 (1334)
Q Consensus 982 ~ia~~L~~-------~~i~~~~g-~~~~~e~~~~~~-~l~~~lGs~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~die~ 1050 (1334)
.|+++|++ ++++++.| +..+.+..+++. +|++.+|++|+++....|..+...+.... ++.+.++.|+++
T Consensus 81 ~ia~~l~~~~~~~G~~~i~~~~g~~~~~~~~~~~~~~~~~~~~Gs~~~~~~~~~c~~~~~~~~~~~~G~~~~~~~~d~~~ 160 (477)
T cd02759 81 EIAEKLAEIKAEYGPESIATAVGTGRGTMWQDSLFWIRFVRLFGSPNLFLSGESCYWPRDMAHALTTGFGLGYDEPDWEN 160 (477)
T ss_pred HHHHHHHHHHHHhCCceEEEeccCCCccccchhHHHHHHHHhcCCCcccCCcccchHHHHHHHHHhhccCCCCCchhhhc
Confidence 99999987 56777644 666777777776 79999999998888788875433333333 234567899999
Q ss_pred cCeEEEEcCCccccch-hHHHHHHHHHhhCCCeEEEEccCCCCcccccc------CCCcHHHHHHHH-------------
Q psy11935 1051 ADLILLIGTNPRFEAP-LFNARIRKGYLTNELDVAYIGPKVDLRYDYEH------LGESADLIKQLA------------- 1110 (1334)
Q Consensus 1051 ad~Il~~G~np~~~~p-~~~~rir~a~~~~g~kiivIdp~~~~t~~~a~------~Gtd~a~l~~l~------------- 1110 (1334)
||+||+||+||..++| ....+++++. ++|++||+|||+.+.|+..++ ||+|.+++.+|+
T Consensus 161 ad~Il~~G~n~~~~~~~~~~~~~~~ar-~~g~klividpr~s~ta~~Ad~~l~i~PGtD~al~~al~~~i~~~~~~d~~f 239 (477)
T cd02759 161 PECIVLWGKNPLNSNLDLQGHWLVAAM-KRGAKLIVVDPRLTWLAARADLWLPIRPGTDAALALGMLNVIINEGLYDKDF 239 (477)
T ss_pred CCEEEEEccChhhhCcHHHHHHHHHHH-HCCCEEEEECCCCChhhHhhCeeeccCCCcHHHHHHHHHHHHHHCCCcCHHH
Confidence 9999999999999999 8888998875 689999999999999987764 999999876643
Q ss_pred -------------------------------hcHHHHHHHHhcCCCcEEEEcCCc---ccHHHHHHHHHHHHH---hhcC
Q psy11935 1111 -------------------------------SGSHPFSKKLSAAKKPLIVVGADI---SDGAAVLALVQQLAA---KVTC 1153 (1334)
Q Consensus 1111 -------------------------------~g~~~~A~~l~~a~~~~ii~G~~~---~~g~~~~~al~~l~~---~~g~ 1153 (1334)
+.++++|+.|+++++++|++|.++ .+|....+++..|.. ++|.
T Consensus 240 ~~~~t~g~~~~~~~~~~~t~e~~~~itGv~~~~i~~lA~~~a~~~~~~i~~g~g~~~~~~g~~~~~a~~~L~~l~G~i~~ 319 (477)
T cd02759 240 VENWCYGFEELAERVQEYTPEKVAEITGVPAEKIRKAARLYATAKPACIQWGLAIDQQKNGTQTSRAIAILRAITGNLDV 319 (477)
T ss_pred HHHHhccHHHHHHHHhcCCHHHHHHHHCcCHHHHHHHHHHHHhCCCeEEEcCCcceeccchHHHHHHHHHHHHHhCCCCC
Confidence 125678999999999999999887 477776666555554 4444
Q ss_pred CCCCCCCCcccccchhhhhhhhhhhcCCCcchhhHhcCCCcEEEEECCChhhh------HHhhcCCCceEEEEcCCCChh
Q psy11935 1154 ESDVPCDWKVLNILQKAASQVAALDIGYKPGTSAIREKPPKVLFLLGADEGSI------SRDDVGKDCFIIYQGHHGDHG 1227 (1334)
Q Consensus 1154 ~Gg~~~~~~~~~~l~~~~n~~G~~~~g~~pg~~~i~~g~ik~l~~~g~np~~~------~~~al~k~~fvV~~d~~~~et 1227 (1334)
+||+ +.. .++++++|++|+||+.. ..++|.+++|+|++|+|+|+|
T Consensus 320 ~Gg~------~~~-----------------------~~~ik~l~v~g~Np~~~~p~~~~~~~al~~~~~vV~~d~~~teT 370 (477)
T cd02759 320 PGGN------LLI-----------------------PYPVKMLIVFGTNPLASYADTAPVLEALKALDFIVVVDLFMTPT 370 (477)
T ss_pred CCCc------cCC-----------------------CCCcEEEEEeCCCccccCCCHHHHHHHHhcCCeEEEEecCcCch
Confidence 4421 110 24789999999999642 578899999999999999999
Q ss_pred hccccEEecCCCCCCCCcccccC--CCceEEeccccCCCCCcccHHHHHHHHHHHhcC
Q psy11935 1228 ASIADAILPGAAYTEKQSTYVNT--EGRAQQTLTAVTPPGLAREDWKIIRALSEGVSS 1283 (1334)
Q Consensus 1228 a~~ADvVLP~a~~~Ek~Gt~~n~--egrvq~~~~av~P~gear~dw~Il~~La~~lg~ 1283 (1334)
+.+||||||+++|+|++|+++|. +++++..+|+|+|+|++|+||+|++.||++||.
T Consensus 371 a~~ADvVLP~~~~~E~~g~~~~~~~~~~~~~~~~~i~P~ge~r~d~~I~~~La~~lg~ 428 (477)
T cd02759 371 AMLADIVLPVAMSLERPGLRGGFEAENFVQLRQKAVEPYGEAKSDYEIVLELGKRLGP 428 (477)
T ss_pred HhhCCEEecCccccccccccccccccceEEEeccccCCCCCCcCHHHHHHHHHHHhCC
Confidence 99999999999999999999997 799999999999999999999999999999993
No 22
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=100.00 E-value=1.3e-54 Score=556.98 Aligned_cols=368 Identities=25% Similarity=0.382 Sum_probs=308.8
Q ss_pred eecccCCCCCceEEEeeCCEEEEecCCCCCCCCccccccccccccccc-cccccCCceEecCCCCeeecCHHHHHHHHHH
Q psy11935 907 SVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGL-KRQRLLTPFVRNCDGQLVATEWEDALIAVAQ 985 (1334)
Q Consensus 907 s~c~~C~~gC~i~v~v~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l-~~~Rl~~PliR~~~g~~~~iSWdeAl~~ia~ 985 (1334)
|+|++|+.||+|.|++++|+|+||+|++++++|+||+|+||||.++.+ +|+||++||+|.+ |+|++|||||||+.+++
T Consensus 1 t~C~~C~~~C~i~v~~~~g~i~rv~~~~~~~~n~g~~C~kg~~~~~~~~~~~Rl~~P~~R~~-g~~~~isWdeAl~~ia~ 79 (671)
T TIGR01591 1 TVCPYCGVGCSLNLVVKDGKIVRVEPYQGHKANRGHLCVKGYFAWEFINSKDRLTTPLIREG-DKFREVSWDEAISYIAE 79 (671)
T ss_pred CcCCCCCCCCCEEEEEECCEEEEeecCCCCCCCCCcccCCccchhhhcCCcccccCCeEcCC-CCEEEccHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999 5999999999985 99999999999999999
Q ss_pred Hhcc-------CCEEEEeCCcCCHHHHHHHHHHHHH-hCCCccccCCCCCcchhhhhhhhhcc---CCCCcccccccCeE
Q psy11935 986 KLQT-------SEVAGVVGSLADAEAMVALKDLLNK-LGSEDLYTEYAFPLEGAGTDLRANYL---LNNKIAGAEEADLI 1054 (1334)
Q Consensus 986 ~L~~-------~~i~~~~g~~~~~e~~~~~~~l~~~-lGs~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~die~ad~I 1054 (1334)
+|++ +++++++|+..+++..+++++|++. +|++++++..++|..+...++...+| .+.++.|+++||+|
T Consensus 80 ~l~~~~~~~g~~~v~~~~~~~~~~e~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~di~~ad~i 159 (671)
T TIGR01591 80 KLKEIKEKYGPDSIGFIGSSRGTNEENYLLQKLARAVIGTNNVDNCARVCHGPSVAGLKQTVGIGAMSNTISEIENADLI 159 (671)
T ss_pred HHHHHHHhhCCCeEEEEecCCcccHHHHHHHHHHHHhcCCccccCCCCceehhhhHHHHHhhCCCCCCCCHHHHHhCCEE
Confidence 9994 5788888888889999999999996 99999998888886554444443333 35678999999999
Q ss_pred EEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCCCCcccccc------CCCcHHHHHHHH------------------
Q psy11935 1055 LLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEH------LGESADLIKQLA------------------ 1110 (1334)
Q Consensus 1055 l~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~~~t~~~a~------~Gtd~a~l~~l~------------------ 1110 (1334)
|+||+||..++|+++.+++++. ++|+|||+|||+.+.|+..++ ||+|.+++.+|+
T Consensus 160 l~~G~n~~~~~~~~~~~i~~a~-~~G~klvvidp~~s~ta~~ad~~i~i~Pgtd~al~lal~~~li~~~~~d~~f~~~~t 238 (671)
T TIGR01591 160 VIIGYNPAESHPVVAQYLKNAK-RNGAKIIVIDPRKTETAKIADLHIPLKPGTDIALLNAMANVIIEEGLYDKAFIEKRT 238 (671)
T ss_pred EEECCChhhccCHHHHHHHHHH-HCCCeEEEECCCCChhhHhhCcccCCCCCcHHHHHHHHHHHHHHCCCcCHHHHHHHh
Confidence 9999999999999999999986 589999999999999987765 899999877663
Q ss_pred --------------------------hcHHHHHHHHhcCCCcEEEEcCCc---ccHHHHHHHHHHHH---HhhcCCCCCC
Q psy11935 1111 --------------------------SGSHPFSKKLSAAKKPLIVVGADI---SDGAAVLALVQQLA---AKVTCESDVP 1158 (1334)
Q Consensus 1111 --------------------------~g~~~~A~~l~~a~~~~ii~G~~~---~~g~~~~~al~~l~---~~~g~~Gg~~ 1158 (1334)
+.++++|+.|+++++++|++|.+. .+|..+++++..|+ |++|++|++
T Consensus 239 ~gf~~~~~~~~~~t~e~~a~~~gv~~~~i~~lA~~l~~~~~~~i~~g~g~~~~~~g~~~~~a~~~L~~l~G~~g~~G~g- 317 (671)
T TIGR01591 239 EGFEEFREIVKGYTPEYVEDITGVPADLIREAARMYAKAGSAAILWGMGVTQHSQGVETVMALINLAMLTGNIGKPGGG- 317 (671)
T ss_pred hCHHHHHHHHHhCCHHHHHHHHCcCHHHHHHHHHHHhhCCCeEEEecCcccccchHHHHHHHHHHHHHHhCCCCCCCCC-
Confidence 114678999999999999999987 56666666655554 555666542
Q ss_pred CCCcccccchhhhhhhhhhhc-------------------------------CCCcc------hhhHhcCCCcEEEEECC
Q psy11935 1159 CDWKVLNILQKAASQVAALDI-------------------------------GYKPG------TSAIREKPPKVLFLLGA 1201 (1334)
Q Consensus 1159 ~~~~~~~~l~~~~n~~G~~~~-------------------------------g~~pg------~~~i~~g~ik~l~~~g~ 1201 (1334)
+.++.+.+|..|..++ ...+| .+.+..|+++++|++|+
T Consensus 318 -----~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~g~i~~l~~~~~ 392 (671)
T TIGR01591 318 -----VNPLRGQNNVQGACDMGALPDFLPGYQPVSDEEVREKFAKAWGVVKLPAEPGLRIPEMIDAAADGDVKALYIMGE 392 (671)
T ss_pred -----CcccCCCCcCCCchhhccCcccCCCCCCCCCHHHHHHHHHHcCCCcCCCCCCCCHHHHHHHHhcCCceEEEEecC
Confidence 1111111222221111 11122 23456789999999999
Q ss_pred Chhh------hHHhhcCCCceEEEEcCCCChhhccccEEecCCCCCCCCcccccCCCceEEeccccCCCCCcccHHHHHH
Q psy11935 1202 DEGS------ISRDDVGKDCFIIYQGHHGDHGASIADAILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPGLAREDWKIIR 1275 (1334)
Q Consensus 1202 np~~------~~~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~Gt~~n~egrvq~~~~av~P~gear~dw~Il~ 1275 (1334)
||+. ...++|++++|+|++|+|+++|+.+||||||+++|+|++|+|+|.+|+++.++++|+|+|++|+||+|++
T Consensus 393 np~~~~~~~~~~~~al~k~~~~V~~d~~~~~ta~~ADiVLP~~~~~E~~g~~~~~~~~~~~~~~~i~p~ge~r~~~~i~~ 472 (671)
T TIGR01591 393 DPLQSDPNTSKVRKALEKLELLVVQDIFMTETAKYADVVLPAAAWLEKEGTFTNAERRIQRFFKAVEPKGESKPDWEIIQ 472 (671)
T ss_pred CccccCCCHHHHHHHHhCCCEEEEEecCCCchhhhCCEEecCCcccCCCccEEcCCceEEEeccccCCCcCCCcHHHHHH
Confidence 9964 2467899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q psy11935 1276 ALSEGVS 1282 (1334)
Q Consensus 1276 ~La~~lg 1282 (1334)
.||++||
T Consensus 473 ~La~~lg 479 (671)
T TIGR01591 473 ELANALG 479 (671)
T ss_pred HHHHHhC
Confidence 9999998
No 23
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=1.4e-54 Score=529.04 Aligned_cols=350 Identities=17% Similarity=0.201 Sum_probs=289.6
Q ss_pred eeeecccCCCCCceEEEeeCCEEEEecCCCCCCCCccccccccccccccc-cccccCCceEecC---CCCeeecCHHHHH
Q psy11935 905 TESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGL-KRQRLLTPFVRNC---DGQLVATEWEDAL 980 (1334)
Q Consensus 905 ~~s~c~~C~~gC~i~v~v~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l-~~~Rl~~PliR~~---~g~~~~iSWdeAl 980 (1334)
++|+|++|+.||++.|+++||+|++|+|++++|+|+|++|.||++.++.+ +|+||++||+|.+ +|+|++||||||+
T Consensus 1 ~~t~C~~C~~~C~l~v~v~dG~v~~v~g~~~~p~~~g~~C~kG~~~~~~~y~p~Rl~~Pl~R~g~rG~g~~~~iSWdeAl 80 (454)
T cd02755 1 VPSICEMCSSRCGILARVEDGRVVKIDGNPLSPLSRGKLCARGNAGIQLLYDPDRLKKPLIRVGERGEGKFREASWDEAL 80 (454)
T ss_pred CCccCcCcccCCCcEEEEECCEEEEEECCCCCCCCCccCCccchhhHhhhCCcchhcCCeeecCCCCCCeEEEeCHHHHH
Confidence 46899999999999999999999999999999999999999999999998 6999999999973 6899999999999
Q ss_pred HHHHHHhcc-------CCEEEEeCCcCCHHHHHHHHHHHHHhCCCccccCCCCCcchhhhhhhhhcc--CCCCccccccc
Q psy11935 981 IAVAQKLQT-------SEVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYL--LNNKIAGAEEA 1051 (1334)
Q Consensus 981 ~~ia~~L~~-------~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~die~a 1051 (1334)
+.||++|++ ++++++.+... ..+++++|++.+|++|++...++|+.+...++...++ ...+..|+++|
T Consensus 81 ~~ia~~l~~~~~~~G~~~i~~~~~~~~---~~~~~~~~~~~lGt~n~~~~~~~c~~~~~~~~~~~~g~~~~~~~~d~~~a 157 (454)
T cd02755 81 QYIASKLKEIKEQHGPESVLFGGHGGC---YSPFFKHFAAAFGSPNIFSHESTCLASKNLAWKLVIDSFGGEVNPDFENA 157 (454)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEecCCc---ccHHHHHHHHHhCCCCCCCccccchhHHHHHHHHHhhccCCCCCcchhcC
Confidence 999999997 34555444432 3567899999999999988778887765555444421 24578899999
Q ss_pred CeEEEEcCCccccchh-HHHHHHHHHhhCCCeEEEEccCCCCcccccc------CCCcHHHHHHHH--------------
Q psy11935 1052 DLILLIGTNPRFEAPL-FNARIRKGYLTNELDVAYIGPKVDLRYDYEH------LGESADLIKQLA-------------- 1110 (1334)
Q Consensus 1052 d~Il~~G~np~~~~p~-~~~rir~a~~~~g~kiivIdp~~~~t~~~a~------~Gtd~a~l~~l~-------------- 1110 (1334)
|+||+||+||.+++|. .+.++++++ ++|++||+|||+.+.|+..++ ||+|.+++.+++
T Consensus 158 d~il~~G~n~~~~~~~~~~~~~~~a~-~~g~kiivIdPr~t~ta~~AD~~i~i~PGtD~al~~a~~~~ii~~~~~d~~fi 236 (454)
T cd02755 158 RYIILFGRNLAEAIIVVDARRLMKAL-ENGAKVVVVDPRFSELASKADEWIPIKPGTDLAFVLALIHVLISENLYDAAFV 236 (454)
T ss_pred CEEEEECcCcccccccHHHHHHHHHH-HCCCeEEEECCCCChhhHhhCEecCCCCCcHHHHHHHHHHHHHHcCCccHHHH
Confidence 9999999999999864 678888875 689999999999999988765 999999877653
Q ss_pred ------------------------------hcHHHHHHHHhc-CCCcEEEEcCCc---ccHHHHHHHHHH---HHHhhcC
Q psy11935 1111 ------------------------------SGSHPFSKKLSA-AKKPLIVVGADI---SDGAAVLALVQQ---LAAKVTC 1153 (1334)
Q Consensus 1111 ------------------------------~g~~~~A~~l~~-a~~~~ii~G~~~---~~g~~~~~al~~---l~~~~g~ 1153 (1334)
+.++++|+.|++ +++++|++|+++ .+|....+++.. |+|++|+
T Consensus 237 ~~~t~g~~~~~~~~~~~t~e~~~~~~gv~~~~i~~~A~~~a~~~~~~~i~~g~g~~~~~~g~~~~~a~~~L~~ltG~ig~ 316 (454)
T cd02755 237 EKYTNGFELLKAHVKPYTPEWAAQITDIPADTIRRIAREFAAAAPHAVVDPGWRGTFYSNSFQTRRAIAIINALLGNIDK 316 (454)
T ss_pred HHHccCHHHHHHHHhcCCHHHHHHHHCCCHHHHHHHHHHHHhhCCCEEEECCccccccCchHHHHHHHHHHHHHhCCCCC
Confidence 115678999998 556777788876 467666655554 4555555
Q ss_pred CCCCCCCCcccccchhhhhhhhhhhcCCCcchhhHhcCCCcEEEEECCChhh------hHHhhcCCCceEEEEcCCCChh
Q psy11935 1154 ESDVPCDWKVLNILQKAASQVAALDIGYKPGTSAIREKPPKVLFLLGADEGS------ISRDDVGKDCFIIYQGHHGDHG 1227 (1334)
Q Consensus 1154 ~Gg~~~~~~~~~~l~~~~n~~G~~~~g~~pg~~~i~~g~ik~l~~~g~np~~------~~~~al~k~~fvV~~d~~~~et 1227 (1334)
+||+. ... +. ..++++++|++|+||+. ...++|.+++|+|++|+|+|+|
T Consensus 317 ~Gg~~------~~~------------~~-------~~~~ik~l~~~~~Np~~~~p~~~~~~~al~~l~f~V~~d~~~teT 371 (454)
T cd02755 317 RGGLY------YAG------------SA-------KPYPIKALFIYRTNPFHSMPDRARLIKALKNLDLVVAIDILPSDT 371 (454)
T ss_pred CCCcc------cCC------------CC-------CCCCceEEEEcCCCcccccCCHHHHHHHHhcCCeEEEEeCCcCch
Confidence 55321 000 00 04679999999999964 2468999999999999999999
Q ss_pred hccccEEecCCCCCCCCcccccC---CCceEEeccccCCCCCcccHHHHHHHHHHHhcC
Q psy11935 1228 ASIADAILPGAAYTEKQSTYVNT---EGRAQQTLTAVTPPGLAREDWKIIRALSEGVSS 1283 (1334)
Q Consensus 1228 a~~ADvVLP~a~~~Ek~Gt~~n~---egrvq~~~~av~P~gear~dw~Il~~La~~lg~ 1283 (1334)
+.+||||||+++|+|++|+++|. +++++..+|+|+|+|++|+||+|+..||++||.
T Consensus 372 a~~ADiVLP~~~~~E~~~~~~~~~~~~~~~~~~~~~v~P~ge~r~d~~i~~~la~~lg~ 430 (454)
T cd02755 372 ALYADVILPEATYLERDEPFSDKGGPAPAVATRQRAIEPLYDTRPGWDILKELARRLGL 430 (454)
T ss_pred HhhCCEEeCCCccccccccccccCCCcceeEEecccCCCCcCCcCHHHHHHHHHHHhCC
Confidence 99999999999999999999984 578999999999999999999999999999994
No 24
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=1e-54 Score=541.56 Aligned_cols=374 Identities=17% Similarity=0.214 Sum_probs=292.4
Q ss_pred eeecccCCCCCceEEEeeCCEEEEecCCCCCCCCccccccccccccccc-cccccCCceEecCCCCeeecCHHHHHHHHH
Q psy11935 906 ESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGL-KRQRLLTPFVRNCDGQLVATEWEDALIAVA 984 (1334)
Q Consensus 906 ~s~c~~C~~gC~i~v~v~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l-~~~Rl~~PliR~~~g~~~~iSWdeAl~~ia 984 (1334)
.|+|++|++||++.|++++|+|+||.|++++|+|+|++|+||++.++.+ +|+||++||+|.+ |+|++||||||++.||
T Consensus 1 ~t~C~~C~~~C~i~v~v~~g~ivkv~g~~~~p~n~G~lC~kG~~~~~~~~~pdRl~~Pl~R~~-g~~~~isWdeAl~~ia 79 (539)
T cd02762 1 KRACILCEANCGLVVTVEDGRVASIRGDPDDPLSKGYICPKAAALGDYQNDPDRLRTPMRRRG-GSFEEIDWDEAFDEIA 79 (539)
T ss_pred CccCCCcccCCCeEEEEECCEEEEEECCCCCCCCCCccChhhhhhhhhccCchhccCCcEecC-CceeEeCHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999988 6999999999986 8999999999999999
Q ss_pred HHhcc-------CCEEEEeCCcCCH-HHHH-HHHHHHHHhCCCccccCCCCCcchhhhhhhhhcc--CCCCcccccccCe
Q psy11935 985 QKLQT-------SEVAGVVGSLADA-EAMV-ALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYL--LNNKIAGAEEADL 1053 (1334)
Q Consensus 985 ~~L~~-------~~i~~~~g~~~~~-e~~~-~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~die~ad~ 1053 (1334)
++|++ ++|+++.|+.... +..+ ..+.|++.+|+++++.....|..+...+....|| .+.++.|+++||+
T Consensus 80 ~kl~~i~~~~G~~~i~~~~g~~~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~D~~~ad~ 159 (539)
T cd02762 80 ERLRAIRARHGGDAVGVYGGNPQAHTHAGGAYSPALLKALGTSNYFSAATADQKPGHFWSGLMFGHPGLHPVPDIDRTDY 159 (539)
T ss_pred HHHHHHHHHhCCCeEEEEecCcccccchHHHHHHHHHHHhCCCccccccchhhhHHHHHHHHhcCCCCCCCchhhhhCCE
Confidence 99986 5788877765544 3333 3457788999999887766775433233333444 3457899999999
Q ss_pred EEEEcCCccccchhHHH------HHHHHHhhCCCeEEEEccCCCCcccccc------CCCcHHHHHHHH-----------
Q psy11935 1054 ILLIGTNPRFEAPLFNA------RIRKGYLTNELDVAYIGPKVDLRYDYEH------LGESADLIKQLA----------- 1110 (1334)
Q Consensus 1054 Il~~G~np~~~~p~~~~------rir~a~~~~g~kiivIdp~~~~t~~~a~------~Gtd~a~l~~l~----------- 1110 (1334)
||+||+||.+++|+++. +++.+ +++|+|||||||+.+.|+..++ ||||.+++.+|+
T Consensus 160 il~~G~N~~~s~~~~~~~~~~~~~~~~a-~~~G~kliviDPr~t~ta~~AD~~l~irPGtD~aL~~a~~~~ii~~~~~D~ 238 (539)
T cd02762 160 LLILGANPLQSNGSLRTAPDRVLRLKAA-KDRGGSLVVIDPRRTETAKLADEHLFVRPGTDAWLLAAMLAVLLAEGLTDR 238 (539)
T ss_pred EEEEecChHhhCCccccccCHHHHHHHH-HhCCCEEEEECCCCchhhHhcCEeeCcCCCcHHHHHHHHHHHHHHCCCCCh
Confidence 99999999999987654 55544 4689999999999999998775 999999987664
Q ss_pred ---------------------------------hcHHHHHHHHhcCCCcEEEEcCCc---ccHHHHHH---HHHHHHHhh
Q psy11935 1111 ---------------------------------SGSHPFSKKLSAAKKPLIVVGADI---SDGAAVLA---LVQQLAAKV 1151 (1334)
Q Consensus 1111 ---------------------------------~g~~~~A~~l~~a~~~~ii~G~~~---~~g~~~~~---al~~l~~~~ 1151 (1334)
+.|+++|+.|+++++++|++|+|. .+|....+ +|..|+|++
T Consensus 239 ~fi~~~t~Gf~~~~~~~~~~t~e~~~~~tGv~~~~I~~lA~~~a~~~~~~i~~g~G~~~~~~g~~~~~ai~~L~~ltG~~ 318 (539)
T cd02762 239 RFLAEHCDGLDEVRAALAEFTPEAYAPRCGVPAETIRRLAREFAAAPSAAVYGRLGVQTQLFGTLCSWLVKLLNLLTGNL 318 (539)
T ss_pred HHHHHHcCcHHHHHHHHhcCCHHHHHHHHCcCHHHHHHHHHHHhcCCceEEEECcccccccCcHHHHHHHHHHHHHhCCC
Confidence 115678999999999999999888 56665544 456677788
Q ss_pred cCCCCCCCCCcccccchhhhhh----hhhhh-----c----CCCcc---hhhHh---cCCCcEEEEECCChhhh------
Q psy11935 1152 TCESDVPCDWKVLNILQKAASQ----VAALD-----I----GYKPG---TSAIR---EKPPKVLFLLGADEGSI------ 1206 (1334)
Q Consensus 1152 g~~Gg~~~~~~~~~~l~~~~n~----~G~~~-----~----g~~pg---~~~i~---~g~ik~l~~~g~np~~~------ 1206 (1334)
|++||+.....+.+ +.+..+. .+.+. + +..|. .++|. .++||++|++|+||+..
T Consensus 319 g~~Ggg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ik~l~~~~~Np~~~~p~~~~ 397 (539)
T cd02762 319 DRPGGAMFTTPALD-LVGQTSGRTIGRGEWRSRVSGLPEIAGELPVNVLAEEILTDGPGRIRAMIVVAGNPVLSAPDGAR 397 (539)
T ss_pred CCCCCccCCCCCCc-cccCCCcccccccccccccCCCCcccccCcHHHHHHHHhcCCCCceEEEEEeCCCccccCCCHHH
Confidence 88875421100000 0000000 00010 0 11111 13332 56899999999999652
Q ss_pred HHhhcCCCceEEEEcCCCChhhccccEEecCCCCCCCCcc-cccC---CCceEEeccccCCCCCcccHHHHHHHHHHHhc
Q psy11935 1207 SRDDVGKDCFIIYQGHHGDHGASIADAILPGAAYTEKQST-YVNT---EGRAQQTLTAVTPPGLAREDWKIIRALSEGVS 1282 (1334)
Q Consensus 1207 ~~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~Gt-~~n~---egrvq~~~~av~P~gear~dw~Il~~La~~lg 1282 (1334)
..++|++++|+|++|+|+|+||.+||||||+++|+|++|. +++. +++++..+|+|+|+|++|+||+|+.+||++|.
T Consensus 398 ~~~al~~ldf~V~~D~~~teTa~~ADiVLPa~~~~E~~d~~~~~~~~~~~~~~~~~~vi~P~ge~k~d~~I~~~La~rl~ 477 (539)
T cd02762 398 LEAALGGLEFMVSVDVYMTETTRHADYILPPASQLEKPHATFFNLEFPRNAFRYRRPLFPPPPGTLPEWEILARLVEALD 477 (539)
T ss_pred HHHHHhcCCeEEEeecccCcchhhCCEEecCCCccccCCccccccccceeEEEEeccccCCCCCCCcHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999984 4443 47899999999999999999999999999995
No 25
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterized. In E. coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).
Probab=100.00 E-value=3.5e-54 Score=558.54 Aligned_cols=381 Identities=18% Similarity=0.232 Sum_probs=304.7
Q ss_pred ceeeeeecccCCCCCceEEEeeCCEEEEecCCCCCCCCccccccccccccccc-cccccCCceEecC------CCCeeec
Q psy11935 902 TRKTESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGL-KRQRLLTPFVRNC------DGQLVAT 974 (1334)
Q Consensus 902 ~~~~~s~c~~C~~gC~i~v~v~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l-~~~Rl~~PliR~~------~g~~~~i 974 (1334)
.+++.|+|++|+.||++.++|+||+|++|.|++++|+|+|++|.||++.++.+ +|+||++||+|.+ +|+|++|
T Consensus 40 ~~~~~s~C~~C~~~C~l~~~v~dG~v~~v~g~~~~p~n~G~lC~kG~~~~~~~~~pdRl~~Pl~R~~~g~~~g~g~~~~i 119 (830)
T TIGR01706 40 IKWDKAPCRFCGTGCGVMVGVKDGRVVATQGDPAAPVNRGLNCIKGYFLSKIMYGQDRLTQPLLRMKDGKYDKDGEFTPV 119 (830)
T ss_pred ceEEEEECCCCCCCCCeEEEEECCEEEEeecCCCCCCCCCccCcchhhhhhhcCCcchhcCCEEecCCCCcccCCCeeEc
Confidence 35788999999999999999999999999999999999999999999999998 6999999999963 5899999
Q ss_pred CHHHHHHHHHHHhcc-------CCEEEEeCCcCCHHHHHHHHHHHH-HhCCCccccCCCCCcchhhhhhhhhccC---CC
Q psy11935 975 EWEDALIAVAQKLQT-------SEVAGVVGSLADAEAMVALKDLLN-KLGSEDLYTEYAFPLEGAGTDLRANYLL---NN 1043 (1334)
Q Consensus 975 SWdeAl~~ia~~L~~-------~~i~~~~g~~~~~e~~~~~~~l~~-~lGs~~~~~~~~~~~~~~~~~~~~~~~~---~~ 1043 (1334)
||||||++||++|++ ++|++++++..+.+..|.+.+|++ .+|++|+++..+.|+.+...++...||. +.
T Consensus 120 SWDeAl~~iA~kl~~i~~~~G~~si~~~gsg~~~~~~~~~~~~~~~~~~gt~~~~~~~~~c~~~~~~~~~~~~G~~~~~~ 199 (830)
T TIGR01706 120 SWDQAFDEMEEQFKRALKEKGPTAIGMFGSGQWTIWEGYAALKLMKAGFRSNNIDPNARHCMASAVVGFMRTFGMDEPMG 199 (830)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCceEEEEecCCcchHHHHHHHHHHHhhcCCCcccCCcccccchhHHHHHHhcCCCCCCC
Confidence 999999999999986 678888787788888888888887 5899999888888987655566555553 34
Q ss_pred CcccccccCeEEEEcCCccccchhHHHHHHHHHh-hCCCeEEEEccCCCCcccccc------CCCcHHHHHHHH------
Q psy11935 1044 KIAGAEEADLILLIGTNPRFEAPLFNARIRKGYL-TNELDVAYIGPKVDLRYDYEH------LGESADLIKQLA------ 1110 (1334)
Q Consensus 1044 ~~~die~ad~Il~~G~np~~~~p~~~~rir~a~~-~~g~kiivIdp~~~~t~~~a~------~Gtd~a~l~~l~------ 1110 (1334)
++.|+++||+||+||+||.+++|+.+.++.++.. ++|+|||||||+.+.|+..++ ||||.+|+.+|+
T Consensus 200 ~~~Di~~ad~il~~G~Np~~~~p~~~~~i~~a~~~~~GakliviDPr~t~ta~~Ad~~l~irPGTD~AL~lam~~~ii~~ 279 (830)
T TIGR01706 200 CYDDFEAADAFVLWGSNMAEMHPILWTRVTDRRLSHPKVKVVVLSTFTHRSFDLADIGIIFKPQTDLAILNYIANYIIQN 279 (830)
T ss_pred CHhHHhhCCEEEEEcCCcchhCCHHHHHHHHHHhccCCCEEEEECCCCCchhHHhCeeeccCCCCHHHHHHHHHHHHHHC
Confidence 6789999999999999999999999999987643 479999999999999987764 999999876653
Q ss_pred ------------h----------------------------------c--------------------------HHHHHH
Q psy11935 1111 ------------S----------------------------------G--------------------------SHPFSK 1118 (1334)
Q Consensus 1111 ------------~----------------------------------g--------------------------~~~~A~ 1118 (1334)
. | |+++|+
T Consensus 280 ~~~D~~Fv~~~t~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~tpe~aa~itGVpa~~I~~lA~ 359 (830)
T TIGR01706 280 NAVNMDFVNKHTVFKTGATDIGYGLRPDHPLEKAAKNADDPAATSLSTFEEFKKFVAPYTLEKTSELSGVPKAKLEQLAE 359 (830)
T ss_pred CCccHHHHHHHhccccccccccccccccccccccccccccccccccCcHHHHHHHHHhCCHHHHHHHHCcCHHHHHHHHH
Confidence 1 2 356789
Q ss_pred HHhcCCC-cEEEEcCCc---ccHHHHHHH---HHHHHHhhcCCCCCCCCCccccc--------------chh------hh
Q psy11935 1119 KLSAAKK-PLIVVGADI---SDGAAVLAL---VQQLAAKVTCESDVPCDWKVLNI--------------LQK------AA 1171 (1334)
Q Consensus 1119 ~l~~a~~-~~ii~G~~~---~~g~~~~~a---l~~l~~~~g~~Gg~~~~~~~~~~--------------l~~------~~ 1171 (1334)
.|+++++ ++|++|.|. .+|.+..++ |+.|+|++|++||+...+.+.+. ++. ..
T Consensus 360 ~~a~~~~~~~i~~g~G~~~~~~g~~~~rai~~L~altGnig~~Ggg~~~~~g~~~~~g~~~~~g~~~~~~p~~~~~~~~~ 439 (830)
T TIGR01706 360 LYADPNRKVMSLWTMGFNQHTRGVWANNMVYNLHLLTGKIATPGNSPFSLTGQPSACGTAREVGTFSHRLPADMVVTNPK 439 (830)
T ss_pred HHhccCCCEEEEEcchhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCcCcCcCCcCcCcchhhhhhccccCCCCcCCCCHH
Confidence 9998764 567788886 566655544 55566777777764211111000 000 00
Q ss_pred hhh---hhhhc--CC---Ccc------hhhHhcCCCcEEEEECCChhhh-------HHhhcCC-CceEEEEcCCCChhhc
Q psy11935 1172 SQV---AALDI--GY---KPG------TSAIREKPPKVLFLLGADEGSI-------SRDDVGK-DCFIIYQGHHGDHGAS 1229 (1334)
Q Consensus 1172 n~~---G~~~~--g~---~pg------~~~i~~g~ik~l~~~g~np~~~-------~~~al~k-~~fvV~~d~~~~eta~ 1229 (1334)
... ..+.. +. .|| .+++..|+||++|++|.||+.. ..+++.+ .+|+|++|+|+|+||.
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~ik~l~~~g~Np~~~~p~~~~~~~~a~~~~~df~Vv~D~f~teTa~ 519 (830)
T TIGR01706 440 HREIAEKIWKIPAGTIPEKPGLHAVAQDRALKDGKLNFYWVQVNNNMQAGPNINEERLPGYRNPDNFIVVSDAYPTVTAL 519 (830)
T ss_pred HHHHHHHHhCCCcccCCCCCCCCHHHHHHHHhCCCceEEEEccCChhhcCccchHHHHHHHhCCCCeEEEecCccCcchh
Confidence 000 00000 11 123 2356678999999999999542 2345554 6799999999999999
Q ss_pred cccEEecCCCCCCCCcccccCCCceEEeccccCCCCCcccHHHHHHHHHHHhc
Q psy11935 1230 IADAILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPGLAREDWKIIRALSEGVS 1282 (1334)
Q Consensus 1230 ~ADvVLP~a~~~Ek~Gt~~n~egrvq~~~~av~P~gear~dw~Il~~La~~lg 1282 (1334)
|||||||+++|+|++|+++|.+++++..+++|+|+||+|+||+|+.+||++||
T Consensus 520 ~ADiVLPa~t~~E~~~~~~~~~r~~~~~~~~v~P~gear~d~~I~~~LA~rlG 572 (830)
T TIGR01706 520 AADLILPSAMWVEKEGAYGNAERRTQVWHQQVLAPGEARSDLWQLVEFSKRFK 572 (830)
T ss_pred hCCEEeCCCcccccCceEEcCCceEEeeccccCCCcccchHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999
No 26
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=4.4e-54 Score=525.23 Aligned_cols=348 Identities=19% Similarity=0.170 Sum_probs=287.4
Q ss_pred eeeeecccCCCCCceEEEeeCCEEEEecCCCCCCC-------Cccccccccccccccc-cccccCCceEecC---CCCee
Q psy11935 904 KTESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDI-------NEEWLADKGRFAYDGL-KRQRLLTPFVRNC---DGQLV 972 (1334)
Q Consensus 904 ~~~s~c~~C~~gC~i~v~v~~g~v~ri~p~~~~~v-------n~g~lC~kgr~~~~~l-~~~Rl~~PliR~~---~g~~~ 972 (1334)
...++|++|+.||++.++|+||+|+||+|++++|. |+|++|+||+++++.+ +|+||++||+|++ +|+|+
T Consensus 4 ~~~~~c~~C~~gC~i~~~v~dg~v~~v~g~~~~p~~~~~~~~~~g~~C~kG~~~~~~~y~p~Rl~~Pl~R~g~rG~g~~~ 83 (461)
T cd02750 4 VRSTHGVNCTGSCSWNVYVKNGIVTREEQATDYPETPPDLPDYNPRGCQRGASFSWYLYSPDRVKYPLKRVGARGEGKWK 83 (461)
T ss_pred eccCCCCCCCCCCceEEEEECCEEEEEecCCCCCcccccccccccccchhhhhhHhhhcChhhhccceeeccCCCCCceE
Confidence 34566889999999999999999999999987776 6899999999999998 6999999999974 58999
Q ss_pred ecCHHHHHHHHHHHhcc-------CCEEEEeC-CcCCHHHHHHHHHHHHHhCCCccccCCCCCcchhhhhhhhhcc---C
Q psy11935 973 ATEWEDALIAVAQKLQT-------SEVAGVVG-SLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYL---L 1041 (1334)
Q Consensus 973 ~iSWdeAl~~ia~~L~~-------~~i~~~~g-~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~---~ 1041 (1334)
+|||||||+.||++|++ +++++++| +..+.+..+++++|++.+|++++++....|... .+....+| .
T Consensus 84 ~isWdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gs~~~~~~~~~~~~~--~~~~~~~G~~~~ 161 (461)
T cd02750 84 RISWDEALELIADAIIDTIKKYGPDRVIGFSPIPAMSMVSYAAGSRFASLIGGVSLSFYDWYGDLP--PGSPQTWGEQTD 161 (461)
T ss_pred EecHHHHHHHHHHHHHHHHHHhCCceEEeeccCCcccchhhHHHHHHHHhcCCccCCCCCcccchh--hhhhhhcCCCCC
Confidence 99999999999999985 57777766 344566777888999999999988766565433 22233333 2
Q ss_pred CCCcccccccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCCCCcccccc------CCCcHHHHHHHH-----
Q psy11935 1042 NNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEH------LGESADLIKQLA----- 1110 (1334)
Q Consensus 1042 ~~~~~die~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~~~t~~~a~------~Gtd~a~l~~l~----- 1110 (1334)
+.++.|+++||+||+||+||..++|..+.+++++. ++|++||||||+.+.|+..++ ||||.+++.+|+
T Consensus 162 ~~~~~d~~~ad~il~~G~N~~~~~~~~~~~l~~ar-~~GaklividPr~s~ta~~Ad~~l~i~PGtD~al~lal~~~i~~ 240 (461)
T cd02750 162 VPESADWYNADYIIMWGSNVPVTRTPDAHFLTEAR-YNGAKVVVVSPDYSPSAKHADLWVPIKPGTDAALALAMAHVIIK 240 (461)
T ss_pred CCChhHHhcCcEEEEECCChHHccCchHHHHHHHH-HCCCEEEEEcCCCCcchhhcCEEeccCCCcHHHHHHHHHHHHHH
Confidence 45688999999999999999999999888998864 689999999999999987765 999999876653
Q ss_pred ---------------------------------hcHHHHHHHHhcCCCcEEEEcCCc---ccHHHHHHHHHH---HHHhh
Q psy11935 1111 ---------------------------------SGSHPFSKKLSAAKKPLIVVGADI---SDGAAVLALVQQ---LAAKV 1151 (1334)
Q Consensus 1111 ---------------------------------~g~~~~A~~l~~a~~~~ii~G~~~---~~g~~~~~al~~---l~~~~ 1151 (1334)
+.+.++|+.|+++++++|++|+|. .+|....+++.. |.|++
T Consensus 241 ~~~~d~~fl~~~t~~~~~v~t~e~~~~~~Gv~~~~I~~~A~~~a~a~~~~i~~g~g~~~~~~g~~~~~a~~~L~~l~G~~ 320 (461)
T cd02750 241 EKLYDEDYLKEYTDLPFLVYTPAWQEAITGVPRETVIRLAREFATNGRSMIIVGAGINHWYHGDLCYRALILLLALTGNE 320 (461)
T ss_pred cCCccHHHHHHhcCChhhcCCHHHHHHHHCcCHHHHHHHHHHHHhcCCcEEEeCCCcccccCchHHHHHHHHHHHHhCCC
Confidence 115678999999998999999887 566655555444 45555
Q ss_pred cCCCCCCCCCcccccchhhhhhhhhhhcCCCcchhhHhcCCCcEEEEECCChhhh------HH-hhc-CCCceEEEEcCC
Q psy11935 1152 TCESDVPCDWKVLNILQKAASQVAALDIGYKPGTSAIREKPPKVLFLLGADEGSI------SR-DDV-GKDCFIIYQGHH 1223 (1334)
Q Consensus 1152 g~~Gg~~~~~~~~~~l~~~~n~~G~~~~g~~pg~~~i~~g~ik~l~~~g~np~~~------~~-~al-~k~~fvV~~d~~ 1223 (1334)
|++|++ +... .|.++++|++|+||+.. .+ +++ ++++|+|++|+|
T Consensus 321 g~~Ggg------~~~~----------------------~g~ik~~~~~g~Np~~~~p~~~~~~~~a~~~~ldf~V~~d~~ 372 (461)
T cd02750 321 GKNGGG------WAHY----------------------VGQPRVLFVWRGNLFGSSGKGHEYFEDAPEGKLDLIVDLDFR 372 (461)
T ss_pred CCCCCc------cccC----------------------CCCceEEEEeCCChHhhCcCHhHHHHhhhhccCCEEEEEecC
Confidence 555532 1100 13489999999999642 34 354 899999999999
Q ss_pred CChhhccccEEecCCCCCCCCc-ccccCCCceEEeccccCCCCCcccHHHHHHHHHHHhc
Q psy11935 1224 GDHGASIADAILPGAAYTEKQS-TYVNTEGRAQQTLTAVTPPGLAREDWKIIRALSEGVS 1282 (1334)
Q Consensus 1224 ~~eta~~ADvVLP~a~~~Ek~G-t~~n~egrvq~~~~av~P~gear~dw~Il~~La~~lg 1282 (1334)
+|+|+.+||||||+++|+|++| +++|.+++++..+|+++|+|++|+||+|++.||++|+
T Consensus 373 ~teTa~~ADvVLP~~~~~E~~~~~~~~~~~~~~~~~~~i~p~gear~d~~I~~~La~~l~ 432 (461)
T cd02750 373 MDSTALYSDIVLPAATWYEKHDLSTTDMHPFIHPFSPAVDPLWEAKSDWEIFKALAKKVP 432 (461)
T ss_pred CCcccccCcEEEecCCCcccCCccccCCCceEEEcccccCCCccCcCHHHHHHHHHHhcC
Confidence 9999999999999999999999 6788999999999999999999999999999999997
No 27
>PRK13532 nitrate reductase catalytic subunit; Provisional
Probab=100.00 E-value=5e-54 Score=558.65 Aligned_cols=382 Identities=18% Similarity=0.240 Sum_probs=306.6
Q ss_pred cceeeeeecccCCCCCceEEEeeCCEEEEecCCCCCCCCccccccccccccccc-cccccCCceEecC------CCCeee
Q psy11935 901 ETRKTESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGL-KRQRLLTPFVRNC------DGQLVA 973 (1334)
Q Consensus 901 e~~~~~s~c~~C~~gC~i~v~v~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l-~~~Rl~~PliR~~------~g~~~~ 973 (1334)
+.++++|+|++|+.||++.++|+||+|++|.|++++|+|+|++|.||++.++.+ +|+||++||+|.+ +|+|++
T Consensus 39 ~~~~~~s~C~~C~~~C~l~~~v~dg~i~~v~g~~~~p~n~G~lC~kG~~~~~~~y~~~Rl~~Pl~R~~rG~~~~~g~~~~ 118 (830)
T PRK13532 39 AIKWDKAPCRFCGTGCGVLVGTKDGRVVATQGDPDAPVNRGLNCIKGYFLSKIMYGKDRLTQPLLRMKDGKYDKEGEFTP 118 (830)
T ss_pred CceEEeEECCCCcCCCCeEEEEECCEEEEEECCCCCCCCCCccCccccchhhccCCcccccCCEEecCCCCcccCCCeEE
Confidence 357889999999999999999999999999999999999999999999999998 5999999999964 589999
Q ss_pred cCHHHHHHHHHHHhcc-------CCEEEEeCCcCCHHHHHHHHHHHH-HhCCCccccCCCCCcchhhhhhhhhccC---C
Q psy11935 974 TEWEDALIAVAQKLQT-------SEVAGVVGSLADAEAMVALKDLLN-KLGSEDLYTEYAFPLEGAGTDLRANYLL---N 1042 (1334)
Q Consensus 974 iSWdeAl~~ia~~L~~-------~~i~~~~g~~~~~e~~~~~~~l~~-~lGs~~~~~~~~~~~~~~~~~~~~~~~~---~ 1042 (1334)
|||||||++||++|++ ++|++++++..+.+..|.+.+|++ .+|++++++..++|+.+...++...||. +
T Consensus 119 isWdeAl~~iA~~l~~i~~~~G~~~i~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~c~~~~~~~~~~~~G~~~~~ 198 (830)
T PRK13532 119 VSWDQAFDVMAEKFKKALKEKGPTAVGMFGSGQWTIWEGYAASKLMKAGFRSNNIDPNARHCMASAVVGFMRTFGIDEPM 198 (830)
T ss_pred ecHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCcchHHHHHHHHHHHhccCCCcccCCccccchhHHHHHHHhhCCCCCC
Confidence 9999999999999976 678888888888888888889986 5899999988788887655555555553 3
Q ss_pred CCcccccccCeEEEEcCCccccchhHHHHHHHHHh-hCCCeEEEEccCCCCcccccc------CCCcHHHHHHHH-----
Q psy11935 1043 NKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYL-TNELDVAYIGPKVDLRYDYEH------LGESADLIKQLA----- 1110 (1334)
Q Consensus 1043 ~~~~die~ad~Il~~G~np~~~~p~~~~rir~a~~-~~g~kiivIdp~~~~t~~~a~------~Gtd~a~l~~l~----- 1110 (1334)
.++.||++||+||+||+||.+++|+.+.++.++.. ++|+|||||||+.+.|+..++ ||||.+|+.+|+
T Consensus 199 ~~~~Di~~a~~il~~G~Np~~~~p~~~~~i~~a~~~~~G~kiiviDPr~t~ta~~ad~~l~irPGtD~al~~am~~~ii~ 278 (830)
T PRK13532 199 GCYDDIEAADAFVLWGSNMAEMHPILWSRVTDRRLSNPDVKVAVLSTFEHRSFELADNGIIFTPQTDLAILNYIANYIIQ 278 (830)
T ss_pred CCHHHHHhCCEEEEECCCchhcCcHHHHHHHHHHhcCCCCeEEEECCCCCchhHhcCeeeccCCCCcHHHHHHHHHHHHH
Confidence 56789999999999999999999999999876643 479999999999999988764 999999876543
Q ss_pred -------------h----------------------------------c--------------------------HHHHH
Q psy11935 1111 -------------S----------------------------------G--------------------------SHPFS 1117 (1334)
Q Consensus 1111 -------------~----------------------------------g--------------------------~~~~A 1117 (1334)
. | |+++|
T Consensus 279 ~~~~D~~Fv~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~a~~~~~~~~~f~~l~~~~~~~tpe~aa~itGV~a~~I~~lA 358 (830)
T PRK13532 279 NNAVNWDFVNKHTNFRKGATDIGYGLRPTHPLEKAAKNPGTAGKSEPISFEEFKKFVAPYTLEKTAKMSGVPKEQLEQLA 358 (830)
T ss_pred CCcccHHHHHHHhccccccccccccccccccccccccccccccccccchHHHHHHHHHhCCHHHHHHHHCcCHHHHHHHH
Confidence 1 3 35689
Q ss_pred HHHhcCCC-cEEEEcCCc---ccHHHHHHH---HHHHHHhhcCCCCCCCCCccc--------------ccchh------h
Q psy11935 1118 KKLSAAKK-PLIVVGADI---SDGAAVLAL---VQQLAAKVTCESDVPCDWKVL--------------NILQK------A 1170 (1334)
Q Consensus 1118 ~~l~~a~~-~~ii~G~~~---~~g~~~~~a---l~~l~~~~g~~Gg~~~~~~~~--------------~~l~~------~ 1170 (1334)
+.|+++++ ++|++|.|. .+|.++.++ |+.|+|++|++||+.....+. ..++. .
T Consensus 359 ~~~a~~~~~~~i~~g~G~~~~~~g~~~~~ai~~L~altGnig~~Ggg~~~~~g~~~~~g~~~~~~~~~~~~p~~~~~~~~ 438 (830)
T PRK13532 359 KLYADPNRKVVSFWTMGFNQHTRGVWANNLVYNIHLLTGKISTPGNGPFSLTGQPSACGTAREVGTFSHRLPADMVVTNP 438 (830)
T ss_pred HHHhccCCcEEEEEccccccchhHHHHHHHHHHHHHHhCCCCCCCCCcCCCCCCcccccchhhhhhCcccCCCCCcCCCH
Confidence 99998764 567788876 566655544 555667777777642111000 00000 0
Q ss_pred hhh-----hhhhhcCC---Ccc------hhhHhcCCCcEEEEECCChhh------h-HHhhcCCC-ceEEEEcCCCChhh
Q psy11935 1171 ASQ-----VAALDIGY---KPG------TSAIREKPPKVLFLLGADEGS------I-SRDDVGKD-CFIIYQGHHGDHGA 1228 (1334)
Q Consensus 1171 ~n~-----~G~~~~g~---~pg------~~~i~~g~ik~l~~~g~np~~------~-~~~al~k~-~fvV~~d~~~~eta 1228 (1334)
... ...+..+. .|| .+.+..|++|++|++|.||+. . ..++|.+. +|+|++|+|+|+||
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~ik~l~~~g~Np~~~~p~~~~~~~~al~~~~~f~Vv~D~~~teTa 518 (830)
T PRK13532 439 KHREIAEKIWKLPEGTIPPKPGYHAVAQDRMLKDGKLNAYWVMCNNNMQAGPNINEERLPGWRNPDNFIVVSDPYPTVSA 518 (830)
T ss_pred HHHHHHHHHhCCCcccCCCCCCCCHHHHHHHHhCCCceEEEEcCCCccccCcCccHHHHHHHhCCCCCEEEECCcCCcch
Confidence 000 00010011 122 235567899999999999954 2 45778776 59999999999999
Q ss_pred ccccEEecCCCCCCCCcccccCCCceEEeccccCCCCCcccHHHHHHHHHHHhc
Q psy11935 1229 SIADAILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPGLAREDWKIIRALSEGVS 1282 (1334)
Q Consensus 1229 ~~ADvVLP~a~~~Ek~Gt~~n~egrvq~~~~av~P~gear~dw~Il~~La~~lg 1282 (1334)
.+||||||+++|+|++|+++|.+++++..+++|+|+||+|+||+|+.+||++||
T Consensus 519 ~~ADiVLPaat~~E~~~~~~~~~~~~~~~~~~v~P~gear~d~~I~~~LA~rlG 572 (830)
T PRK13532 519 LAADLILPTAMWVEKEGAYGNAERRTQFWRQQVKAPGEAKSDLWQLVEFSKRFK 572 (830)
T ss_pred hhCCEEeCCCcccccCcceecccceEEEecccCCCCcccchHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999
No 28
>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins. This CD is of the PHLH region homologous to the catalytic molybdopterin-binding subunit of MopB homologs.
Probab=100.00 E-value=5.3e-54 Score=532.79 Aligned_cols=389 Identities=16% Similarity=0.141 Sum_probs=306.0
Q ss_pred cccccccccCC--cccCCCCcceeeeeecccCCCCCceEEEeeCCEEEEecCCCCCCCCccccccccccccccc-ccccc
Q psy11935 883 CPVGALTSKPY--SFTARPWETRKTESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGL-KRQRL 959 (1334)
Q Consensus 883 CpvGAl~~k~~--~~~~r~we~~~~~s~c~~C~~gC~i~v~v~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l-~~~Rl 959 (1334)
+|+.++++-.- .....+.+...+.|+|++ +.||++.++|+||+|++|+|+++||+|+|++|+||+++++.+ +|+||
T Consensus 22 ~~~~~~~~~~~~~~~~~~g~~~~~~~s~C~~-g~~C~l~v~v~dGrv~~v~g~~~~p~n~G~lC~kg~~~~~~~y~pdRl 100 (524)
T cd02764 22 YPVEKIVPYVIWPENIVPGETVYYATSLVPA-GEGQGVLVKTVDGRPIKIEGNPDHPASLGGTSARAQASVLSLYDPDRA 100 (524)
T ss_pred CChhhhCCcccCcccccCCccceeEEEecCC-CcceeEEEEEECCeEEEeeCCCCCCcCCCCcCHHHHHHHHhhcChHhh
Confidence 67777755221 111244567788999999 999999999999999999999999999999999999999999 59999
Q ss_pred CCceEecCCCCeeecCHHHHHHHHHHHhcc----CCEEEEeCCcCCHHHHHHHHHHHHH-hCCCccccCCCCCcchhhhh
Q psy11935 960 LTPFVRNCDGQLVATEWEDALIAVAQKLQT----SEVAGVVGSLADAEAMVALKDLLNK-LGSEDLYTEYAFPLEGAGTD 1034 (1334)
Q Consensus 960 ~~PliR~~~g~~~~iSWdeAl~~ia~~L~~----~~i~~~~g~~~~~e~~~~~~~l~~~-lGs~~~~~~~~~~~~~~~~~ 1034 (1334)
++||+|.++|+|++||||||++.||++|++ +++++++|+..+++..+++++|++. +|++++++. ..|......+
T Consensus 101 ~~Pl~R~g~g~~~~iSWdeAld~ia~~l~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~ 179 (524)
T cd02764 101 QGPLRRGIDGAYVASDWADFDAKVAEQLKAVKDGGKLAVLSGNVNSPTTEALIGDFLKKYPGAKHVVYD-PLSAEDVNEA 179 (524)
T ss_pred hhhHhcCCCCCeeeCCHHHHHHHHHHHHHHhhcCCcEEEEeCCCCCchHHHHHHHHHHhCCCCceeeEC-CCChHHHHHH
Confidence 999999877999999999999999999997 6788888887777878888999985 566665543 3443333333
Q ss_pred hhhhccC-CCCcccccccCeEEEEcCCccccch--hHHHHHHHHHhhCC-----CeEEEEccCCCCcccccc------CC
Q psy11935 1035 LRANYLL-NNKIAGAEEADLILLIGTNPRFEAP--LFNARIRKGYLTNE-----LDVAYIGPKVDLRYDYEH------LG 1100 (1334)
Q Consensus 1035 ~~~~~~~-~~~~~die~ad~Il~~G~np~~~~p--~~~~rir~a~~~~g-----~kiivIdp~~~~t~~~a~------~G 1100 (1334)
+...||. ..+..|+++||+||+||+||.+++| +...+....++++| .|||+|||+.+.|+..++ ||
T Consensus 180 ~~~~~G~~~~~~~D~~~a~~il~~G~N~~~~~~~~~~~~~~~~~ar~~g~~~~g~kliviDPr~s~ta~~Ad~~l~irPG 259 (524)
T cd02764 180 WQASFGKDVVPGYDFDKAEVIVSIDADFLGSWISAIRHRHDFAAKRRLGAEEPMSRLVAAESVYTLTGANADVRLAIRPS 259 (524)
T ss_pred HHHHcCCCCCCCcChhHCcEEEEECCcccccCcccchhHHHHHHhccccCCCCceeEEEEecCCCchhhhhcceeccCcc
Confidence 4444543 3467899999999999999999964 44444433334444 499999999999988765 99
Q ss_pred CcHHHHHHHH-----h-------------------------------cHHHHHHHHhcCCCcEEEEcCCc--ccHHHHHH
Q psy11935 1101 ESADLIKQLA-----S-------------------------------GSHPFSKKLSAAKKPLIVVGADI--SDGAAVLA 1142 (1334)
Q Consensus 1101 td~a~l~~l~-----~-------------------------------g~~~~A~~l~~a~~~~ii~G~~~--~~g~~~~~ 1142 (1334)
||.+++.+|+ + .++++|+.|+++++++|++|.+. ..|.+..+
T Consensus 260 tD~al~lam~~~ii~~~~~d~d~~f~~~~~~~~tpe~aa~itgv~~~~I~~lA~~~a~~~~~~i~~G~g~~~~~g~~~~~ 339 (524)
T cd02764 260 QEKAFALGLAHKLIKKGAGSSLPDFFRALNLAFKPAKVAELTVDLDKALAALAKALAAAGKSLVVAGSELSQTAGADTQV 339 (524)
T ss_pred cHHHHHHHHHHHHhhccccccchhhhhhhhcccCcccccccccchHHHHHHHHHHHHhcCCcEEEECCCCCccccHHHHH
Confidence 9999987664 1 14679999999888999999988 34767777
Q ss_pred HHHHHHHhhcCCCCCCCCCcccccchhhhhhhhhhhcCCCc---chhhHhcCCCcEEEEECCChhh------hHHhhcCC
Q psy11935 1143 LVQQLAAKVTCESDVPCDWKVLNILQKAASQVAALDIGYKP---GTSAIREKPPKVLFLLGADEGS------ISRDDVGK 1213 (1334)
Q Consensus 1143 al~~l~~~~g~~Gg~~~~~~~~~~l~~~~n~~G~~~~g~~p---g~~~i~~g~ik~l~~~g~np~~------~~~~al~k 1213 (1334)
++..|+..+|+.|... .+. .+ +..+....+ .+ -+++|..|+++++|++|+||+. ...++|++
T Consensus 340 ai~~L~altG~~g~~~-~~~--~~-----~~~~~~~~~-~~~~~l~~~i~~g~ik~l~v~~~Np~~~~p~~~~~~~al~k 410 (524)
T cd02764 340 AVNALNSLLGNDGKTV-DHA--RP-----IKGGELGNQ-QDLKALASRINAGKVSALLVYDVNPVYDLPQGLGFAKALEK 410 (524)
T ss_pred HHHHHHHHhCCCCccc-cCC--CC-----cccccccch-HHHHHHHHHHHcCCccEEEEeCCCccccCCCcHHHHHHHhc
Confidence 7776666666554211 000 00 000100000 01 1356678999999999999964 35789999
Q ss_pred CceEEEEcCCCChhhccccEEecCCCCCCCCcccccCCCceEEeccccCCCCCcccH-HHHHHHHHHHhc
Q psy11935 1214 DCFIIYQGHHGDHGASIADAILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPGLARED-WKIIRALSEGVS 1282 (1334)
Q Consensus 1214 ~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~Gt~~n~egrvq~~~~av~P~gear~d-w~Il~~La~~lg 1282 (1334)
++|+|++|+|+|+|+.+||||||+++|+|++|+++|.+|+++..+|+|+|+|++|+| |+|++.||++||
T Consensus 411 ~df~Vv~d~~~teTa~~ADvVLPaat~~E~~g~~~~~~~~~~~~~~~i~P~gear~d~~~i~~~La~~lg 480 (524)
T cd02764 411 VPLSVSFGDRLDETAMLCDWVAPMSHGLESWGDAETPDGTYSICQPVIAPLFDTRSAQESLLLALGGSLG 480 (524)
T ss_pred CCeEEEecCCCChhHHhcCEeccCCCccccccCccccCceEEEeccccccccCCCCcHHHHHHHhccCCC
Confidence 999999999999999999999999999999999999999999999999999999999 999999999999
No 29
>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=100.00 E-value=1.8e-53 Score=529.20 Aligned_cols=373 Identities=17% Similarity=0.178 Sum_probs=286.1
Q ss_pred eeecccCCCCCceEEEeeCCEEEEecCCCCCCCCccccccccccccccc-cccccCCceEecC---CCCeeecCHHHHHH
Q psy11935 906 ESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGL-KRQRLLTPFVRNC---DGQLVATEWEDALI 981 (1334)
Q Consensus 906 ~s~c~~C~~gC~i~v~v~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l-~~~Rl~~PliR~~---~g~~~~iSWdeAl~ 981 (1334)
.|+|++|++||+|.|+|++|+|++|.|++++|+|.|++|.||+++++.+ +|+||++||+|.+ +|+|++||||||++
T Consensus 1 ~T~C~~C~~gCgi~v~v~dG~v~~I~gn~~~p~n~G~lC~KG~a~~~~vyspdRL~~PL~R~g~RG~g~f~~ISWDEAld 80 (679)
T cd02763 1 TTTCYMCACRCGIRVHLRDGKVRYIKGNPDHPLNKGVICAKGSSGIMKQYSPARLTKPLLRKGPRGSGQFEEIEWEEAFS 80 (679)
T ss_pred CccCCCCcCCCCeEEEEECCEEEEEEcCCCCCccccccChhhhhHHHhhcCcchhcCCEEeccCCCCCceEEeCHHHHHH
Confidence 3899999999999999999999999999999999999999999999998 6999999999974 58999999999999
Q ss_pred HHHHHhcc------CCEEEEeCCcCCHHHHHHHHHHHHHhCCCccccCCCCCcchhhhhhhhhccC---CCCcccccccC
Q psy11935 982 AVAQKLQT------SEVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLL---NNKIAGAEEAD 1052 (1334)
Q Consensus 982 ~ia~~L~~------~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~die~ad 1052 (1334)
.||++|++ +++++++|+... .++.++|++.+|++|++.++++|+.+...+...++|. ..+..|+++||
T Consensus 81 ~IA~kL~~i~~~gp~~ia~~~g~~~~---~~l~~~f~~~lGt~n~~~~~~~C~~~~~~a~~~~~G~~~~~~~~~D~~~Ad 157 (679)
T cd02763 81 IATKRLKAARATDPKKFAFFTGRDQM---QALTGWFAGQFGTPNYAAHGGFCSVNMAAGGLYSIGGSFWEFGGPDLEHTK 157 (679)
T ss_pred HHHHHHHHHHHhCCCeEEEEeCCccH---HHHHHHHHHhcCCCCcCCCCCcchHHHHHHHHHhhCCCCCCCChhHHHhCC
Confidence 99999986 568877765432 4567888899999999998899986544444444432 34678999999
Q ss_pred eEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCCCCcccccc------CCCcHHHHHHHH----------------
Q psy11935 1053 LILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEH------LGESADLIKQLA---------------- 1110 (1334)
Q Consensus 1053 ~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~~~t~~~a~------~Gtd~a~l~~l~---------------- 1110 (1334)
+||+||+|+....+.+..++++++ ++|+|||+|||+.+.|+..++ ||||.+++.+|+
T Consensus 158 ~Ivl~G~n~~~~~~p~~~~i~~ak-~~GaKlIvIDPr~t~ta~~AD~wl~irPGTD~aL~lal~~~Li~~g~~D~~Fl~~ 236 (679)
T cd02763 158 YFMMIGVAEDHHSNPFKIGIQKLK-RRGGKFVAVNPVRTGYAAIADEWVPIKPGTDGAFILALAHELLKAGLIDWEFLKR 236 (679)
T ss_pred EEEEECCCCcccCchHHHHHHHHH-hCCCcEEEEcCcCCcchHhhCeecCcCCCcHHHHHHHHHHHHHHCCCcCHHHHHH
Confidence 999999998766544566777765 689999999999999987765 999999987764
Q ss_pred -----------------------hcHHHHHHHHhcCC------------------------CcEEEE-cCCc---ccHHH
Q psy11935 1111 -----------------------SGSHPFSKKLSAAK------------------------KPLIVV-GADI---SDGAA 1139 (1334)
Q Consensus 1111 -----------------------~g~~~~A~~l~~a~------------------------~~~ii~-G~~~---~~g~~ 1139 (1334)
+.|+++|+.|+.++ +|++++ |.|+ .+|.+
T Consensus 237 ~t~g~~l~~ytpe~aa~itGV~ae~I~~lA~~~a~~~~~~~~~~~~~~~~~~g~~~~~~~~~pv~~~~~~G~~~~~nG~~ 316 (679)
T cd02763 237 YTNAAELVDYTPEWVEKITGIPADTIRRIAKELGVTARDQPIELPIAWTDVWGRKHEKITGRPVSFHAMRGIAAHSNGFQ 316 (679)
T ss_pred HcCcHHhhcCCHHHHHHHHCcCHHHHHHHHHHHHhcccccccccccccccccccccccccCcceEEeccccccccccHHH
Confidence 12678999999753 344444 4465 67777
Q ss_pred HHHHHH---HHHHhhcCCCCCCCCCc---ccccchhhhhhh-hhhh--------cCC-----------------------
Q psy11935 1140 VLALVQ---QLAAKVTCESDVPCDWK---VLNILQKAASQV-AALD--------IGY----------------------- 1181 (1334)
Q Consensus 1140 ~~~al~---~l~~~~g~~Gg~~~~~~---~~~~l~~~~n~~-G~~~--------~g~----------------------- 1181 (1334)
.++++. .|+|++|++||+..... ...+.+...+.. +..+ +|+
T Consensus 317 ~~rAi~~L~aLtGnig~pGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~r~~~~~~ 396 (679)
T cd02763 317 TIRALFVLMMLLGTIDRPGGFRHKPPYPRHIPPLPKPPKIPSADKPFTPLYGPPLGWPASPDDLLVDEDGNPLRIDKAYS 396 (679)
T ss_pred HHHHHHHHHHHhCCCCCCCCcccCCCCcccccccccccccccccccccccccccccCCCCchhccccccccchhhccccc
Confidence 666654 45567777775311000 000000000000 0000 000
Q ss_pred ------Ccch-h----hHhcC---CCcEEEEECCChhh-------hHHhhcC--------CCceEEEEcCCCChhhcccc
Q psy11935 1182 ------KPGT-S----AIREK---PPKVLFLLGADEGS-------ISRDDVG--------KDCFIIYQGHHGDHGASIAD 1232 (1334)
Q Consensus 1182 ------~pg~-~----~i~~g---~ik~l~~~g~np~~-------~~~~al~--------k~~fvV~~d~~~~eta~~AD 1232 (1334)
.+|+ . .+..| +||++|++++||+. .++++|. +++|+|++|+|+|+||.|||
T Consensus 397 ~~~p~~~~gl~~~~i~~~~~g~py~Ikal~i~~~Np~~~s~pn~~~v~eaL~~~d~~~~~kl~flVv~D~f~teTa~~AD 476 (679)
T cd02763 397 WEYPLAAHGCMQNVITNAWRGDPYPIDTLMIYMANMAWNSSMNTPEVREMLTDKDASGNYKIPFIIVCDAFYSEMVAFAD 476 (679)
T ss_pred cccCccccchHHHHHHHhhcCCCCCceEEEEcCCCcccccCCCHHHHHHHHhccccccccccCeEEEEeCCCChhhhhCC
Confidence 1121 1 12235 49999999999962 2477887 67899999999999999999
Q ss_pred EEecCCCCCCCCcccccCCCceE--------EeccccCCCCCcccHHHHHHHHHHHhc
Q psy11935 1233 AILPGAAYTEKQSTYVNTEGRAQ--------QTLTAVTPPGLAREDWKIIRALSEGVS 1282 (1334)
Q Consensus 1233 vVLP~a~~~Ek~Gt~~n~egrvq--------~~~~av~P~gear~dw~Il~~La~~lg 1282 (1334)
||||+++|+|++|++++.+++++ ..+|+|+|+|++|+||+|+.+||++||
T Consensus 477 vVLP~~t~lEr~~~~~~~~r~~~~~~~~~~~~r~pvi~P~gear~d~eI~~~LA~rLG 534 (679)
T cd02763 477 LVLPDTTYLERHDAMSLLDRPISEADGPVDAIRVPIVEPKGDVKPFQEVLIELGTRLG 534 (679)
T ss_pred EEecCCCccccccccccccccccccccchhhhcccccCCCcCCcCHHHHHHHHHHHhC
Confidence 99999999999999998776554 357899999999999999999999999
No 30
>PRK15488 thiosulfate reductase PhsA; Provisional
Probab=100.00 E-value=2.1e-52 Score=541.13 Aligned_cols=377 Identities=16% Similarity=0.184 Sum_probs=293.1
Q ss_pred ceeeeeecccCCCCCceEEEeeCCEEEEecCCCCCCCCccccccccccccccc-cccccCCceEecC---CCCeeecCHH
Q psy11935 902 TRKTESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGL-KRQRLLTPFVRNC---DGQLVATEWE 977 (1334)
Q Consensus 902 ~~~~~s~c~~C~~gC~i~v~v~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l-~~~Rl~~PliR~~---~g~~~~iSWd 977 (1334)
.+.++|+|++|+.||++.++++||+|++|.|++++|+|+|++|+||++.++.+ +|+||++||+|++ +|+|++||||
T Consensus 41 ~~~~~t~C~~C~~~C~l~~~v~~G~iv~v~g~~~~p~n~g~~C~kG~~~~~~~y~p~Rl~~Pl~R~~~rg~g~~~~iSWd 120 (759)
T PRK15488 41 TKLTPSICEMCSTRCPIEARVVNGKNVFIQGNPKAKSFGTKVCARGGSGHSLLYDPQRIVKPLKRVGERGEGKWQEISWD 120 (759)
T ss_pred ceEEccCCCCccCCCceEEEEECCEEEEeECCCCCCCCCCccCccchhHHHhhcCcchhccceeecCCCCCCCeEEeCHH
Confidence 57899999999999999999999999999999999999999999999999999 6999999999974 5899999999
Q ss_pred HHHHHHHHHhcc-------CCEEEEeCCcCCHHHHHHHHHHHHHhCCCccccCCCCCcchhhhhhhhhccCCCCcccccc
Q psy11935 978 DALIAVAQKLQT-------SEVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEE 1050 (1334)
Q Consensus 978 eAl~~ia~~L~~-------~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~die~ 1050 (1334)
|||++||++|++ ++++++.+. .+. .+++.+|++.+|++|+++..++|..+...++...+| .....|+++
T Consensus 121 EAl~~ia~~l~~i~~~~G~~~i~~~~~~-~~~--~~~~~~~~~~~Gs~n~~~~~~~c~~~~~~~~~~~~G-~~~~~D~~~ 196 (759)
T PRK15488 121 EAYQEIAAKLNAIKQQHGPESVAFSSKS-GSL--SSHLFHLATAFGSPNTFTHASTCPAGYAIAAKVMFG-GKLKRDLAN 196 (759)
T ss_pred HHHHHHHHHHHHHHHHhCCceEEeecCC-CcH--HHHHHHHHHHcCCCCCCCccccccchhhhhHHhhcC-CCccCCHhh
Confidence 999999999986 566644322 222 235678999999999998888998765555555555 234689999
Q ss_pred cCeEEEEcCCccccchhHH-HHHHHHHhhCCCeEEEEccCCCCcccccc------CCCcHHHHHHHH-------------
Q psy11935 1051 ADLILLIGTNPRFEAPLFN-ARIRKGYLTNELDVAYIGPKVDLRYDYEH------LGESADLIKQLA------------- 1110 (1334)
Q Consensus 1051 ad~Il~~G~np~~~~p~~~-~rir~a~~~~g~kiivIdp~~~~t~~~a~------~Gtd~a~l~~l~------------- 1110 (1334)
||+||+||+||.+++|+.+ .+++++++++|+|||||||+.+.|+..++ ||+|++++.+|+
T Consensus 197 ad~Il~~G~N~~~~~~~~~~~~~~~a~~~~G~kiivIDPr~s~ta~~Ad~~l~i~PGtD~al~~al~~~ii~~~~~D~~f 276 (759)
T PRK15488 197 SKYIINFGHNLYEGINMSDTRGLMTAQMEKGAKLVVFEPRFSVVASKADEWHAIRPGTDLAVVLALCHVLIEENLYDKAF 276 (759)
T ss_pred CcEEEEeccChHhcCCcHHHHHHHHHHHhCCCEEEEECCCCCcchhhCCeeeccCCCcHHHHHHHHHHHHHHcCcccHHH
Confidence 9999999999999998755 44777765789999999999999988765 999999877653
Q ss_pred -------------------------------hcHHHHHHHHhcCCCcE-EEEcCCc---ccHHHHHH---HHHHHHHhhc
Q psy11935 1111 -------------------------------SGSHPFSKKLSAAKKPL-IVVGADI---SDGAAVLA---LVQQLAAKVT 1152 (1334)
Q Consensus 1111 -------------------------------~g~~~~A~~l~~a~~~~-ii~G~~~---~~g~~~~~---al~~l~~~~g 1152 (1334)
+.++++|+.|+++++.+ +.+|.+. .+|..+.+ .|..|+|++|
T Consensus 277 i~~~t~gf~~~~~~~~~~t~e~~a~~~Gv~~~~I~~lA~~~a~~~~~~v~~~g~g~~~~~~g~~~~~ai~~L~~l~G~ig 356 (759)
T PRK15488 277 VERYTSGFEELAASVKEYTPEWAEAISDVPADDIRRIARELAAAAPHAIVDFGHRATFTPEEFDMRRAIFAANVLLGNIE 356 (759)
T ss_pred HHHHHhHHHHHHHHHhccCHHHHHHHhCcCHHHHHHHHHHHHhhCCeEEEecCCCceecCccHHHHHHHHHHHHHhCcCC
Confidence 11567899998766544 4467776 34554444 4556667777
Q ss_pred CCCCCCCCCc--ccccchhhhhhhhhhh--------------------cCCC---cc-----hhhHhcC---CCcEEEEE
Q psy11935 1153 CESDVPCDWK--VLNILQKAASQVAALD--------------------IGYK---PG-----TSAIREK---PPKVLFLL 1199 (1334)
Q Consensus 1153 ~~Gg~~~~~~--~~~~l~~~~n~~G~~~--------------------~g~~---pg-----~~~i~~g---~ik~l~~~ 1199 (1334)
++||+..... +++.+.+..+..+..+ .++. ++ ++++..| +++++|++
T Consensus 357 ~~Gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~l~~~ 436 (759)
T PRK15488 357 RKGGLYFGKNASVYNKLAGEKVAPTLAKPGVKGMPKPTAKRIDLVGEQFKYIAAGGGVVQSIIDATLTQKPYQIKGWVMS 436 (759)
T ss_pred CCCCcccCCCcccccccCCcccCcccccCccccCCCccccccccccccccCCcccCchHHHHHHHHhcCCCCCceEEEEe
Confidence 7775321100 1111111000000000 0000 11 2344444 69999999
Q ss_pred CCChhh------hHHhhcCCCceEEEEcCCCChhhccccEEecCCCCCCCCcccccCCCc---eEEeccccCCCCCcccH
Q psy11935 1200 GADEGS------ISRDDVGKDCFIIYQGHHGDHGASIADAILPGAAYTEKQSTYVNTEGR---AQQTLTAVTPPGLARED 1270 (1334)
Q Consensus 1200 g~np~~------~~~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~Gt~~n~egr---vq~~~~av~P~gear~d 1270 (1334)
|+||+. .+.++|++++|+|++|+|+|+|+.+||||||+++|+|++|+++|.+|+ ++..+|+|+|+|++|+|
T Consensus 437 g~Np~~~~p~~~~~~~al~k~df~V~~d~~~teTa~~ADvVLPa~t~~E~~g~~~~~~~~~~~~~~~~~~v~P~ge~~~d 516 (759)
T PRK15488 437 RHNPMQTVTDRADVVKALKKLDLVVVCDVYLSESAAYADVVLPESTYLERDEEISDKSGKNPAYALRQRVVEPIGDTKPS 516 (759)
T ss_pred CCCccccCCCHHHHHHHHhcCCeEEEEeCCCCcchhhccEEecCCccccccccccccCCCCcceeeeccccCCCccCccH
Confidence 999964 247889999999999999999999999999999999999999998764 66779999999999999
Q ss_pred HHHHHHHHHHhc
Q psy11935 1271 WKIIRALSEGVS 1282 (1334)
Q Consensus 1271 w~Il~~La~~lg 1282 (1334)
|+|++.||++||
T Consensus 517 ~~I~~~La~~lg 528 (759)
T PRK15488 517 WQIFKELGEKMG 528 (759)
T ss_pred HHHHHHHHHHhC
Confidence 999999999999
No 31
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=1.4e-51 Score=508.87 Aligned_cols=351 Identities=16% Similarity=0.143 Sum_probs=284.0
Q ss_pred eeeeecccCCCCCceEEEeeCCEEEEecCCCCCCCCccccccccccccccc-cccccCCceEecC-------CCCeeecC
Q psy11935 904 KTESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGL-KRQRLLTPFVRNC-------DGQLVATE 975 (1334)
Q Consensus 904 ~~~s~c~~C~~gC~i~v~v~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l-~~~Rl~~PliR~~-------~g~~~~iS 975 (1334)
+++|+|++|+.||++.|+|++|+|++|+|+++||+|+|++|+||++.++.+ +|+||++||+|++ +|+|++||
T Consensus 1 ~~~t~C~~C~~~C~l~v~v~dg~v~kv~g~~~~p~n~G~lC~kG~~~~~~~y~pdRi~~Pl~R~~~rg~~~~~g~~~~is 80 (523)
T cd02757 1 WVPSTCQGCTAWCGLQAYVEDGRVTKVEGNPLHPGSRGRLCAKGHLGLQQVYDPDRILYPMKRTNPRKGRDVDPKFVPIS 80 (523)
T ss_pred CcCccCcCCcCCCCeEEEEECCEEEEEECCCCCCCCCccCCcccccchhhhcCccccccCeeecCCCCCCCCCCCeeEec
Confidence 368999999999999999999999999999999999999999999999998 6999999999974 68999999
Q ss_pred HHHHHHHHHHHhcc-------CCEEEEeCCcCCHHHHHHHHHHHHHhCCCccccCCCCCcchhhhhhhhhcc-CCCCccc
Q psy11935 976 WEDALIAVAQKLQT-------SEVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYL-LNNKIAG 1047 (1334)
Q Consensus 976 WdeAl~~ia~~L~~-------~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d 1047 (1334)
|||||+.||++|++ ++++++.| +.+.+..+++.+|++.+|++|++.+.+.|..+...+....++ ...+..|
T Consensus 81 WdeAl~~ia~~l~~~~~~~g~~~i~~~~g-~~~~~~~~~~~r~~~~~Gs~~~~~~~~~c~~~~~~~~~~~~g~~~~~~~D 159 (523)
T cd02757 81 WDEALDTIADKIRALRKENEPHKIMLHRG-RYGHNNSILYGRFTKMIGSPNNISHSSVCAESEKFGRYYTEGGWDYNSYD 159 (523)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceEEEEeC-CCCCccchHHHHHHHHhCcCCCcCCcchhhhHHHHHHHHHhCCCCCCCcc
Confidence 99999999999986 45655544 444455568899999999999877778887654444433332 2335679
Q ss_pred ccccCeEEEEcCCccccchhH--HHHHHHHHhhCCCeEEEEccCCCCcccccc------CCCcHHHHHHHHh--------
Q psy11935 1048 AEEADLILLIGTNPRFEAPLF--NARIRKGYLTNELDVAYIGPKVDLRYDYEH------LGESADLIKQLAS-------- 1111 (1334)
Q Consensus 1048 ie~ad~Il~~G~np~~~~p~~--~~rir~a~~~~g~kiivIdp~~~~t~~~a~------~Gtd~a~l~~l~~-------- 1111 (1334)
+++||+||+||+||..+++.. ..++.++. ++|+|||+|||+.+.|+..++ ||||++++.+|+.
T Consensus 160 ~~~a~~Il~~G~n~~~t~~~~~~~~~~~~a~-~~gakliviDPr~s~ta~~AD~~l~i~PGtD~al~lama~~ii~~~~~ 238 (523)
T cd02757 160 YANAKYILFFGADPLESNRQNPHAQRIWGGK-MDQAKVVVVDPRLSNTAAKADEWLPIKPGEDGALALAIAHVILTEGLW 238 (523)
T ss_pred hhcCcEEEEECCChHHhCCCcHHHHHHHHHH-HCCCEEEEECCCCChhhHhcCEeeCCCCCcHHHHHHHHHHHHHHCCCc
Confidence 999999999999999886443 36777774 689999999999999987765 9999998766530
Q ss_pred -----------------------------------------------------------cHHHHHHHHhcCCCcEEEE-c
Q psy11935 1112 -----------------------------------------------------------GSHPFSKKLSAAKKPLIVV-G 1131 (1334)
Q Consensus 1112 -----------------------------------------------------------g~~~~A~~l~~a~~~~ii~-G 1131 (1334)
.+.++|+.|++++++++++ +
T Consensus 239 d~~Fv~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~t~e~aa~~tGv~~~~I~~lA~~~a~~~~~~~~~~~ 318 (523)
T cd02757 239 DKDFVGDFVDGKNYFKAGETVDEESFKEKSTEGLVKWWNLELKDYTPEWAAKISGIPAETIERVAREFATAAPAAAAFTW 318 (523)
T ss_pred cHHHHHHhccchhhhhcCCcCChhhccccchhHHHHHHHHHHhccCHHHHHHHHCcCHHHHHHHHHHHHhcCCcEEEecC
Confidence 0456789999888665554 5
Q ss_pred CCc---ccHHHHHHHHHHH---HHhhcCCCCCCCCCcccccchhhhhhhhhhhcCCCcchhhHhcCCCcEEEEECCChhh
Q psy11935 1132 ADI---SDGAAVLALVQQL---AAKVTCESDVPCDWKVLNILQKAASQVAALDIGYKPGTSAIREKPPKVLFLLGADEGS 1205 (1334)
Q Consensus 1132 ~~~---~~g~~~~~al~~l---~~~~g~~Gg~~~~~~~~~~l~~~~n~~G~~~~g~~pg~~~i~~g~ik~l~~~g~np~~ 1205 (1334)
.|. .+|.+..+++..| +|++|++||.. +. . ..++++++|++|+||+.
T Consensus 319 ~g~~~~~~G~~~~~ai~~L~~ltG~ig~~GG~~-------~~-----------~---------~~~~ik~~~~~~~Np~~ 371 (523)
T cd02757 319 RGATMQNRGSYNSMACHALNGLVGSIDSKGGLC-------PN-----------M---------GVPKIKVYFTYLDNPVF 371 (523)
T ss_pred ccccccCChHHHHHHHHHHHHHhCCCCCCCCCc-------CC-----------C---------CCCCceEEEEccCCccc
Confidence 554 5676666655554 45555554310 00 0 01379999999999964
Q ss_pred ------hHHhhcCCCceEEEEcCCCChhhccccEEecCCCCCCCCcc---cccCCCceEEeccccCCCCCcccHHHHHHH
Q psy11935 1206 ------ISRDDVGKDCFIIYQGHHGDHGASIADAILPGAAYTEKQST---YVNTEGRAQQTLTAVTPPGLAREDWKIIRA 1276 (1334)
Q Consensus 1206 ------~~~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~Gt---~~n~egrvq~~~~av~P~gear~dw~Il~~ 1276 (1334)
.+.++|++++|+|++|+|+|+|+.+||||||+++|+|++|. ++|.+++++..+|+|+|+|++|+||+|+.+
T Consensus 372 ~~pd~~~~~eal~~~~~~V~~d~~~teTa~~ADiVLP~~~~~E~~~~~~~~~~~~~~~~~~~~vi~P~ge~r~d~ei~~~ 451 (523)
T cd02757 372 SNPDGMSWEEALAKIPFHVHLSPFMSETTYFADIVLPDGHHFERWDVMSQENNLHPWLSIRQPVVKSLGEVREETEILIE 451 (523)
T ss_pred cCCCHHHHHHHHHCCCeEEEEeCCcCchHhhCCEEecCCChhhhcCccccccCCcceeEEecCccCCCcCCCCHHHHHHH
Confidence 35788999999999999999999999999999999999985 457778899999999999999999999999
Q ss_pred HHHHhcC
Q psy11935 1277 LSEGVSS 1283 (1334)
Q Consensus 1277 La~~lg~ 1283 (1334)
||++||+
T Consensus 452 La~~l~~ 458 (523)
T cd02757 452 LAKKLDP 458 (523)
T ss_pred HHHHhCC
Confidence 9999993
No 32
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=100.00 E-value=5.2e-51 Score=488.85 Aligned_cols=336 Identities=32% Similarity=0.465 Sum_probs=287.1
Q ss_pred eeecccCCCCCceEEEeeCCEEEEecCCCCCCCCccccccccccccccc-cccccCCceEecCC-CCeeecCHHHHHHHH
Q psy11935 906 ESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGL-KRQRLLTPFVRNCD-GQLVATEWEDALIAV 983 (1334)
Q Consensus 906 ~s~c~~C~~gC~i~v~v~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l-~~~Rl~~PliR~~~-g~~~~iSWdeAl~~i 983 (1334)
+|+|++|++||++.+++++|+|+||.|++++|+|+||+|+||||+++.+ +|+||++||+|.+. |+|++||||||++.+
T Consensus 1 ~s~C~~C~~gC~i~v~~~~g~i~ri~~~~~~~~n~g~~C~rg~~~~~~~~~~~Rl~~Pl~r~~~~~~~~~isWdeAl~~i 80 (374)
T cd00368 1 PSVCPFCGVGCGILVYVKDGKVVRIEGDPNHPVNEGRLCDKGRAGLDGLYSPDRLKYPLIRVGGRGKFVPISWDEALDEI 80 (374)
T ss_pred CcCCCCCcCCCCEEEEEECCEEEEEECCCCCCCCCceECCCccccccccCCcccccCCeEecCCCCCeEEecHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999 59999999999852 399999999999999
Q ss_pred HHHhcc-------CCEEEEeCCcCCHHHHHHHHHHHHHhCCCccccCCCCCcchhhhhhhh--hccCCCCcccccccCeE
Q psy11935 984 AQKLQT-------SEVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRA--NYLLNNKIAGAEEADLI 1054 (1334)
Q Consensus 984 a~~L~~-------~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~die~ad~I 1054 (1334)
+++|++ ++++++.|+..+.+..+++++|+..+|++++++...+|..+...++.. ....+.++.|+++||+|
T Consensus 81 a~~l~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ad~i 160 (374)
T cd00368 81 AEKLKEIREKYGPDAIAFYGGGGASNEEAYLLQKLLRALGSNNVDSHARLCHASAVAALKAFGGGAPTNTLADIENADLI 160 (374)
T ss_pred HHHHHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHHhcCCCccCCCCcccHHHHHHHHHHhCCCCCCCCHHHHhhCCEE
Confidence 999986 578888888899999999999999999999998888887654444432 22346789999999999
Q ss_pred EEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCCCCcccccc------CCCcHHHHHH-----HH----hcHHHHHHH
Q psy11935 1055 LLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEH------LGESADLIKQ-----LA----SGSHPFSKK 1119 (1334)
Q Consensus 1055 l~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~~~t~~~a~------~Gtd~a~l~~-----l~----~g~~~~A~~ 1119 (1334)
|+||+||..++|+...+++++. ++|+||++|||+.+.|+..++ ||+|.+++.+ ++ +.+.++|+.
T Consensus 161 l~~G~n~~~~~~~~~~~~~~a~-~~g~kvv~idp~~s~t~~~ad~~i~i~pgtd~al~~a~~~~~i~g~~~~~i~~la~~ 239 (374)
T cd00368 161 LLWGSNPAETHPVLAARLRRAK-KRGAKLIVIDPRRTETAAKADEWLPIRPGTDAALALAEWAAEITGVPAETIRALARE 239 (374)
T ss_pred EEEcCChHHhChHHHHHHHHHH-HCCCeEEEEcCCCCcchHhhCEeeCCCCCcHHHHHhHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999999999986 589999999999998876654 8999998743 11 237889999
Q ss_pred HhcCCCcEEEEcCCc---ccHHHHHHHHHHHHHhhcC---CCCCCCCCcccccchhhhhhhhhhhcCCCcchhhHhcCCC
Q psy11935 1120 LSAAKKPLIVVGADI---SDGAAVLALVQQLAAKVTC---ESDVPCDWKVLNILQKAASQVAALDIGYKPGTSAIREKPP 1193 (1334)
Q Consensus 1120 l~~a~~~~ii~G~~~---~~g~~~~~al~~l~~~~g~---~Gg~~~~~~~~~~l~~~~n~~G~~~~g~~pg~~~i~~g~i 1193 (1334)
|++++++++++|.+. .++....+++..|...+|. +|+. +..
T Consensus 240 ~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~l~~l~G~~~~~g~~------~~~--------------------------- 286 (374)
T cd00368 240 FAAAKRAVILWGMGLTQHTNGTQNVRAIANLAALTGNIGRPGGG------LGP--------------------------- 286 (374)
T ss_pred HHhCCCeEEEeccccceecccHHHHHHHHHHHHHhCCCCCCCCc------CCC---------------------------
Confidence 999998999999887 4666666666665555544 3311 000
Q ss_pred cEEEEECCChhh------hHHhhcCCCceEEEEcCCCChhhccccEEecCCCCCCCCcccccCCCceEEeccccCCCCCc
Q psy11935 1194 KVLFLLGADEGS------ISRDDVGKDCFIIYQGHHGDHGASIADAILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPGLA 1267 (1334)
Q Consensus 1194 k~l~~~g~np~~------~~~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~Gt~~n~egrvq~~~~av~P~gea 1267 (1334)
|.||+. ...++|.+++|+|++|+|+++|+.+||||||+++|+|++|+++|.+|++|.++++++|+|++
T Consensus 287 ------~~np~~~~~~~~~~~~al~~~~~~V~~d~~~~eta~~ADvvLP~~~~~E~~g~~~~~~~~~~~~~~~v~p~~~~ 360 (374)
T cd00368 287 ------GGNPLVSAPDANRVRAALKKLDFVVVIDIFMTETAAYADVVLPAATYLEKEGTYTNTEGRVQLFRQAVEPPGEA 360 (374)
T ss_pred ------CCChhhcCCCHHHHHHHHhCCCeEEEEecCCCcchhhCcEEecCCcccccCCCccCCCceEEEecCCcCCCCCC
Confidence 455532 23578999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHh
Q psy11935 1268 REDWKIIRALSEGV 1281 (1334)
Q Consensus 1268 r~dw~Il~~La~~l 1281 (1334)
|+||+|+..|+++|
T Consensus 361 ~~~~~i~~~La~~l 374 (374)
T cd00368 361 RSDWEILRELAKRL 374 (374)
T ss_pred ccHHHHHHHHHhhC
Confidence 99999999999875
No 33
>cd02758 MopB_Tetrathionate-Ra The MopB_Tetrathionate-Ra CD contains tetrathionate reductase, subunit A, (TtrA) and other related proteins. The Salmonella enterica tetrathionate reductase catalyses the reduction of trithionate but not sulfur or thiosulfate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=1.5e-50 Score=511.85 Aligned_cols=379 Identities=16% Similarity=0.141 Sum_probs=289.9
Q ss_pred eeecccCCCCCceEEEeeC--CEEEEecCCCCCCCC---------------------------ccccccccccccccc-c
Q psy11935 906 ESVDVLDAVGSNIIVSTRT--GEVLRVLPRLNEDIN---------------------------EEWLADKGRFAYDGL-K 955 (1334)
Q Consensus 906 ~s~c~~C~~gC~i~v~v~~--g~v~ri~p~~~~~vn---------------------------~g~lC~kgr~~~~~l-~ 955 (1334)
+|+|.+|++||+|.|+|++ |+|++|.|++.||.| .|++|.||+++++.+ +
T Consensus 1 ~s~C~~C~~~Cgi~v~v~~~~g~v~~i~Gnp~hP~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~lC~KG~a~~~~~y~ 80 (735)
T cd02758 1 YSSCLGCWTQCGIRVRVDKETGKVLRIAGNPYHPLNTAPSLPYNTPLKESLYLSLVGENGLKARATACARGNAGLQYLYD 80 (735)
T ss_pred CCcCcCCcCCCCeEEEEeCCCCeEEEeeCCCCCccccCCCcccccchhhhhhhccccccccccCCCcCccchhhHhhhcC
Confidence 4899999999999999999 999999999999999 999999999999999 5
Q ss_pred ccccCCceEecC---CCCeeecCHHHHHHHHHHHh-----------cc-----------------CC--EEEEeCCcCCH
Q psy11935 956 RQRLLTPFVRNC---DGQLVATEWEDALIAVAQKL-----------QT-----------------SE--VAGVVGSLADA 1002 (1334)
Q Consensus 956 ~~Rl~~PliR~~---~g~~~~iSWdeAl~~ia~~L-----------~~-----------------~~--i~~~~g~~~~~ 1002 (1334)
|+||++||+|+| +|+|++||||||+++||+++ ++ ++ ++++.+.. ..
T Consensus 81 p~Rl~~PLkR~G~RGegkw~~ISWdeAl~~IA~~~~~~~~~~~~gl~~i~~~~~~idp~~p~~Gp~s~~~~~~~~~~-~~ 159 (735)
T cd02758 81 PYRVLQPLKRVGPRGSGKWKPISWEQLIEEVVEGGDLFGEGHVEGLKAIRDLDTPIDPDHPDLGPKANQLLYTFGRD-EG 159 (735)
T ss_pred cccccCCeeecCCCCCCceEEecHHHHHHHHHhccccccccchhhHHHHHhhhcccccCccccCceeeEEEEEecCC-Cc
Confidence 999999999974 68999999999999999984 32 12 33233222 11
Q ss_pred HHHHHHHHHH-HHhCCCccccCCCCCcchhhhhhhhhc----cCCCCcccccccCeEEEEcCCccccchhH---HHHHHH
Q psy11935 1003 EAMVALKDLL-NKLGSEDLYTEYAFPLEGAGTDLRANY----LLNNKIAGAEEADLILLIGTNPRFEAPLF---NARIRK 1074 (1334)
Q Consensus 1003 e~~~~~~~l~-~~lGs~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~die~ad~Il~~G~np~~~~p~~---~~rir~ 1074 (1334)
. .+++++|+ ..+||+|+++++++|+.+...+....+ +...++.|+++||+||+||+||.+++|++ +.++.+
T Consensus 160 ~-~~~~~rf~~~~~Gs~N~~~~~~~C~~s~~~g~~~~~g~~~~~~~~~~D~~~ad~il~~GsN~a~~~~~~~~~~~~l~~ 238 (735)
T cd02758 160 R-TPFIKRFANQAFGTVNFGGHGSYCGLSYRAGNGALMNDLDGYPHVKPDFDNAEFALFIGTSPAQAGNPFKRQARRLAE 238 (735)
T ss_pred c-hHHHHHHHHHcCCCCceeCCCCccccHHHHHHHHHhcCCCCCCcCCcCHhhCcEEEEeCCCHHHhCCCcchHHHHHHH
Confidence 2 27889999 689999999999999877555555444 23457899999999999999999999987 677878
Q ss_pred HHhhCCCeEEEEccCCCCcc---cccc------CCCcHHHHHHHH-----------------------------------
Q psy11935 1075 GYLTNELDVAYIGPKVDLRY---DYEH------LGESADLIKQLA----------------------------------- 1110 (1334)
Q Consensus 1075 a~~~~g~kiivIdp~~~~t~---~~a~------~Gtd~a~l~~l~----------------------------------- 1110 (1334)
+..++|+||||||||++.|+ ..++ ||||.+|+.+|+
T Consensus 239 a~~~~G~KlVVVDPr~t~ta~~~~~Ad~wlpIrPGTD~AL~lam~~~Iie~~~yD~~Fl~~~~~~a~~~~g~~~~tna~~ 318 (735)
T cd02758 239 ARTEGNFKYVVVDPVLPNTTSAAGENIRWVPIKPGGDGALAMAMIRWIIENERYNAEYLSIPSKEAAKAAGEPSWTNATH 318 (735)
T ss_pred HHHhCCCEEEEECCCCCccccccccCCEEECCCCCcHHHHHHHHHHHHHHCCCccHHHHhccchhhhccccccccccccc
Confidence 76558999999999999988 6654 999999876542
Q ss_pred --------hc--------------------------HHHHHHHHhcCCCcEEEEcCCc---ccHHHHHHH---HHHHHHh
Q psy11935 1111 --------SG--------------------------SHPFSKKLSAAKKPLIVVGADI---SDGAAVLAL---VQQLAAK 1150 (1334)
Q Consensus 1111 --------~g--------------------------~~~~A~~l~~a~~~~ii~G~~~---~~g~~~~~a---l~~l~~~ 1150 (1334)
.| |+++|+.|+++++.+++++.|. .+|....++ |..|+|+
T Consensus 319 lv~~v~v~~gfe~l~e~~~~~Tpe~~a~icGVp~~~I~~lAr~fa~~~~~~~~~~~G~~~~~nG~~~~~Ai~~L~~LtGn 398 (735)
T cd02758 319 LVITVRVKSALQLLKEEAFSYSLEEYAEICGVPEAKIIELAKEFTSHGRAAAVVHHGGTMHSNGFYNAYAIRMLNALIGN 398 (735)
T ss_pred cccccccccHHHHHHHHhhcCCHHHHHHHHCcCHHHHHHHHHHHHhcCCceEEEccCcccccccHHHHHHHHHHHHHhCC
Confidence 12 4578999999888888777776 667665555 4556677
Q ss_pred hcCCCCCC---CCCc----ccc----cchhh---------------------hhhhhhhhcCC------Cc---c-----
Q psy11935 1151 VTCESDVP---CDWK----VLN----ILQKA---------------------ASQVAALDIGY------KP---G----- 1184 (1334)
Q Consensus 1151 ~g~~Gg~~---~~~~----~~~----~l~~~---------------------~n~~G~~~~g~------~p---g----- 1184 (1334)
+|++||+. +.+. +.+ ..++. ...+.....++ .| +
T Consensus 399 ig~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~e~ 478 (735)
T cd02758 399 LNWKGGLLMSGGGFADNSAGPRYDFKKFFGEVKPWGVPIDRSKKAYEKTSEYKRKVAAGENPYPAKRPWYPLTPELYTEV 478 (735)
T ss_pred CCCCCCCccCCCCCCCcCcccccccccccCccCCCCCcccccccccccchHhhhhhhccCCCCccccccccccchhhhHH
Confidence 77777531 1110 000 00000 00000000000 11 1
Q ss_pred hhhHhcC---CCcEEEEECCChhh------h-HHhhc---CCCceEEEEcCCCChhhccccEEecCCCCCCCCcccccCC
Q psy11935 1185 TSAIREK---PPKVLFLLGADEGS------I-SRDDV---GKDCFIIYQGHHGDHGASIADAILPGAAYTEKQSTYVNTE 1251 (1334)
Q Consensus 1185 ~~~i~~g---~ik~l~~~g~np~~------~-~~~al---~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~Gt~~n~e 1251 (1334)
+.++..| +||++|++++||+. . ..++| ++++|+|++|+|+|+|+.|||||||+++|+|++|++++..
T Consensus 479 ~~a~~~g~Py~IKal~i~~~NP~~s~p~~~~~~~eaL~d~~kldlvVv~D~~~teTa~~AD~VLPa~t~~E~~~~~~~~~ 558 (735)
T cd02758 479 IASAAEGYPYKLKALILWMANPVYGAPGLVKQVEEKLKDPKKLPLFIAIDAFINETSAYADYIVPDTTYYESWGFSTPWG 558 (735)
T ss_pred hhhhhhcCCCCcEEEEEeCCChhhcCCcchHHHHHHhcccccCCeEEEEecCcCchHhhCCEEeCCCCcccccccccccC
Confidence 2345567 79999999999954 2 56788 5899999999999999999999999999999999998853
Q ss_pred ----CceEEeccccCCCCC------cccHHHHHHHHHHHhc-CCCC
Q psy11935 1252 ----GRAQQTLTAVTPPGL------AREDWKIIRALSEGVS-SNLS 1286 (1334)
Q Consensus 1252 ----grvq~~~~av~P~ge------ar~dw~Il~~La~~lg-~~~~ 1286 (1334)
+.++..+|+|+|+|+ +|++|+|+.+||++|| |.+.
T Consensus 559 ~~~~~~~~~r~pvv~P~ge~~~~g~~~~~~~i~~~lAkrlGl~gfg 604 (735)
T cd02758 559 GVPTKASTARWPVIAPLTEKTANGHPVSMESFLIDLAKALGLPGFG 604 (735)
T ss_pred CCcccceeeEccccCcCcccccCCCccCHHHHHHHHHHHhCCCCcc
Confidence 345666899999984 6779999999999998 4543
No 34
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=100.00 E-value=8.6e-51 Score=507.16 Aligned_cols=341 Identities=16% Similarity=0.125 Sum_probs=272.6
Q ss_pred eeecc-cCCCCCceEEEeeCCEEEEecCCCCCCCCccccccccccccccc-cccccCCceEecC---CCCeeecCHHHHH
Q psy11935 906 ESVDV-LDAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGL-KRQRLLTPFVRNC---DGQLVATEWEDAL 980 (1334)
Q Consensus 906 ~s~c~-~C~~gC~i~v~v~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l-~~~Rl~~PliR~~---~g~~~~iSWdeAl 980 (1334)
.|+|+ +|+.||++.++|+||+|++|.|+++++.|.+++|+||++.++.+ +|+||++||+|.+ +|+|++||||||+
T Consensus 1 ~~~C~~~C~~~C~i~v~v~dG~iv~v~g~~~~~~~~~~~C~kG~~~~~~~y~pdRl~~Pl~R~g~rG~g~~~~iSWdEAl 80 (567)
T cd02765 1 YTACPPNCGGRCPLKCHVRDGKIVKVEPNEWPDKTYKRGCTRGLSHLQRVYSPDRLKYPMKRVGERGEGKFERITWDEAL 80 (567)
T ss_pred CCccCCccccCCceEEEEECCEEEEEeCCCCCCCCCCCcCcccchhhhhhcChhhhcCCeeecCCCCCCcEEEecHHHHH
Confidence 36797 59999999999999999999999777778999999999999999 5999999999974 5899999999999
Q ss_pred HHHHHHhcc-------CCEEEEeCCcCCHHHHHHHHHHHHHhCCCccccCCCCCcchhhhhhhhhcc-----CCCCcccc
Q psy11935 981 IAVAQKLQT-------SEVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYL-----LNNKIAGA 1048 (1334)
Q Consensus 981 ~~ia~~L~~-------~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~di 1048 (1334)
+.||++|++ ++++++.|+....+..++..+++. ++.+.++....|.. ...++...+| .+.++.|+
T Consensus 81 ~~ia~kl~~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~~~D~ 157 (567)
T cd02765 81 DTIADKLTEAKREYGGKSILWMSSSGDGAILSYLRLALLG--GGLQDALTYGIDTG-VGQGFNRVTGGGFMPPTNEITDW 157 (567)
T ss_pred HHHHHHHHHHHHHhCCceEEEEecCCCcccccHHHHHHhh--CCCCcccccCcccc-cccCccceeccccccCCCCHhHH
Confidence 999999987 578877776554444443323332 22222222222222 1122222211 24578999
Q ss_pred cccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCCCCcccccc------CCCcHHHHHHHH------------
Q psy11935 1049 EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEH------LGESADLIKQLA------------ 1110 (1334)
Q Consensus 1049 e~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~~~t~~~a~------~Gtd~a~l~~l~------------ 1110 (1334)
++||+||+||+||..++|....+++++. ++|+|||||||+.+.|+..++ ||||.+++.+|+
T Consensus 158 ~~ad~il~~G~Np~~s~~~~~~~~~~a~-~~GakliviDPr~s~ta~~Ad~~l~irPGTD~al~~am~~~ii~~~l~D~~ 236 (567)
T cd02765 158 VNAKTIIIWGSNILETQFQDAEFFLDAR-ENGAKIVVIDPVYSTTAAKADQWVPIRPGTDPALALGMINYILEHNWYDEA 236 (567)
T ss_pred hcCcEEEEECCChHHccchhHHHHHHHH-HcCCeEEEECCCCCcchhhcCEEeccCCCchHHHHHHHHHHHHhcCcccHH
Confidence 9999999999999999999878887775 689999999999999998765 999999876543
Q ss_pred ------h--------------------------------------------------------------c----------
Q psy11935 1111 ------S--------------------------------------------------------------G---------- 1112 (1334)
Q Consensus 1111 ------~--------------------------------------------------------------g---------- 1112 (1334)
. |
T Consensus 237 Fi~~~t~~~~lv~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~g~~~~~g~~~~~~f~~~~~~~~~ 316 (567)
T cd02765 237 FLKSNTSAPFLVREDNGTLLRQADVTATPAEDGYVVWDTNSDSPEPVAATNINPALEGEYTINGVKVHTVLTALREQAAS 316 (567)
T ss_pred HHHhcCCCceEEEccCCcEeehhhccccCccCceEEEECCCCCcccCCCCCCCcceeeeEEECCEEEeEHHHHHHHHhhc
Confidence 0 1
Q ss_pred ----------------HHHHHHHHhcCCCcEEEEcCCc---ccHHHHHHH---HHHHHHhhcCCCCCCCCCcccccchhh
Q psy11935 1113 ----------------SHPFSKKLSAAKKPLIVVGADI---SDGAAVLAL---VQQLAAKVTCESDVPCDWKVLNILQKA 1170 (1334)
Q Consensus 1113 ----------------~~~~A~~l~~a~~~~ii~G~~~---~~g~~~~~a---l~~l~~~~g~~Gg~~~~~~~~~~l~~~ 1170 (1334)
|+++|+.|+.+++++|++|+|. .+|....++ |+.|+|++|++||+.
T Consensus 317 ~tpe~aa~itGV~~~~I~~lA~~~a~~~~~~i~~g~g~~~~~~g~~~~ra~~~L~~ltG~ig~~Ggg~------------ 384 (567)
T cd02765 317 YPPKAAAEICGLEEAIIETLAEWYATGKPSGIWGFGGVDRYYHSHVFGRTAAILAALTGNIGRVGGGV------------ 384 (567)
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHhhCCCeEEecccchhhhhhchHHHHHHHHHHHHhCcCCCCCCCc------------
Confidence 4568999999988888888887 456655555 445556666665321
Q ss_pred hhhhhhhhcCCCcchhhHhcCCCcEEEEECCChhh------hHHhhcCCCceEEEEcCCCChhhccccEEecCCCCCCCC
Q psy11935 1171 ASQVAALDIGYKPGTSAIREKPPKVLFLLGADEGS------ISRDDVGKDCFIIYQGHHGDHGASIADAILPGAAYTEKQ 1244 (1334)
Q Consensus 1171 ~n~~G~~~~g~~pg~~~i~~g~ik~l~~~g~np~~------~~~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~ 1244 (1334)
|.+|++|++|+||+. .+.++|.+++|+|++|+|+|+|+.+||||||+++|+|++
T Consensus 385 --------------------~~ik~l~~~~~Np~~~~p~~~~~~~al~kldf~V~~d~~~teTa~~ADvvLP~~~~~E~~ 444 (567)
T cd02765 385 --------------------GQIKFMYFMGSNFLGNQPDRDRWLKVMKNLDFIVVVDIFHTPTVRYADIVLPAAHWFEVE 444 (567)
T ss_pred --------------------cceeEEEEecCchhhccchHHHHHHHHhcCCEEEEEecccCcchhhccEEecCCcccccc
Confidence 018999999999964 357899999999999999999999999999999999999
Q ss_pred cccccCC--CceEEeccccCCCCCcccHHHHHHHHHHHhc
Q psy11935 1245 STYVNTE--GRAQQTLTAVTPPGLAREDWKIIRALSEGVS 1282 (1334)
Q Consensus 1245 Gt~~n~e--grvq~~~~av~P~gear~dw~Il~~La~~lg 1282 (1334)
|+++|.+ +++|..+|+|+|+|++|+||+|+.+||++||
T Consensus 445 ~~~~~~~~~~~~~~~~~~i~p~gear~d~~I~~~La~~lG 484 (567)
T cd02765 445 DLLVRYTTHPHVLLQQKAIEPLFESKSDFEIEKGLAERLG 484 (567)
T ss_pred cccccccCCceEEEeccccCCCCCCccHHHHHHHHHHHhC
Confidence 9999976 8899999999999999999999999999999
No 35
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=1.2e-50 Score=512.02 Aligned_cols=374 Identities=16% Similarity=0.182 Sum_probs=284.1
Q ss_pred eeccc-CCCCCceEEEeeCCEEEEecCCCCCCCC----ccccccccccccccc-cccccCCceEecC---CCCeeecCHH
Q psy11935 907 SVDVL-DAVGSNIIVSTRTGEVLRVLPRLNEDIN----EEWLADKGRFAYDGL-KRQRLLTPFVRNC---DGQLVATEWE 977 (1334)
Q Consensus 907 s~c~~-C~~gC~i~v~v~~g~v~ri~p~~~~~vn----~g~lC~kgr~~~~~l-~~~Rl~~PliR~~---~g~~~~iSWd 977 (1334)
|+|++ |+.||++.|+|++|+|++|+|++++|+| .|++|.||++.++.+ +|+||++||+|++ +|+|++||||
T Consensus 2 ~~C~~~C~~~C~l~v~v~~G~i~~v~g~~~~p~~~g~~~g~~C~kG~~~~~~~y~p~Rl~~Pl~R~g~rG~g~~~~isWD 81 (617)
T cd02770 2 SACTVNCGGRCPLKAHVKDGVITRIETDDTGDDDPGFHQIRACLRGRSQRKRVYNPDRLKYPMKRVGKRGEGKFVRISWD 81 (617)
T ss_pred CccCCccCCCCceEEEEECCEEEEEeCCCCCCcccccCCCCcChhhhhhhhhhcChhHhcCCceecCcCCCCCeEEecHH
Confidence 68987 9999999999999999999999999875 557999999999998 6999999999975 5899999999
Q ss_pred HHHHHHHHHhcc-------CCEEEEeCCc-CC--HHHHHHHHHHHHHhCCCccccCCCCCcchhhhhhhhhcc---CCCC
Q psy11935 978 DALIAVAQKLQT-------SEVAGVVGSL-AD--AEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYL---LNNK 1044 (1334)
Q Consensus 978 eAl~~ia~~L~~-------~~i~~~~g~~-~~--~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 1044 (1334)
|||++||++|++ ++++++.|.. .+ ......+.+|++.+|+. .++..++|..+...++...+| .+.+
T Consensus 82 eAl~~ia~kl~~i~~~~G~~ai~~~~g~g~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~c~~~~~~~~~~~~G~~~~~~~ 160 (617)
T cd02770 82 EALDTIASELKRIIEKYGNEAIYVNYGTGTYGGVPAGRGAIARLLNLTGGY-LNYYGTYSWAQITTATPYTYGAAASGSS 160 (617)
T ss_pred HHHHHHHHHHHHHHHHhCchheEeeccccccCccccchHHHHHHHHhcCCc-cCCCCCccHhHHhhhhceEEecCCCCCC
Confidence 999999999987 4666554432 22 23356778899989874 344556776554444444444 2568
Q ss_pred cccccccCeEEEEcCCccccchh---HHHHHHHHHhhCCCeEEEEccCCCCccc-ccc------CCCcHHHHHHHHh---
Q psy11935 1045 IAGAEEADLILLIGTNPRFEAPL---FNARIRKGYLTNELDVAYIGPKVDLRYD-YEH------LGESADLIKQLAS--- 1111 (1334)
Q Consensus 1045 ~~die~ad~Il~~G~np~~~~p~---~~~rir~a~~~~g~kiivIdp~~~~t~~-~a~------~Gtd~a~l~~l~~--- 1111 (1334)
+.|+++||+||+||+||..++|. ...++++++ ++|+|||||||+.+.|+. .++ ||||.+|+.+|+.
T Consensus 161 ~~D~~~a~~ii~wG~N~~~~~~~~~~~~~~~~~a~-~~G~klivIDPr~t~tA~~~AD~~i~irPGTD~AL~lam~~~ii 239 (617)
T cd02770 161 LDDLKDSKLVVLFGHNPAETRMGGGGSTYYYLQAK-KAGAKFIVIDPRYTDTAVTLADEWIPIRPGTDAALVAAMAYVMI 239 (617)
T ss_pred HHHHhcCCEEEEECCCHHHhcCCCCchHHHHHHHH-HcCCeEEEECCCCCccccccCCEEECCCCCcHHHHHHHHHHHHH
Confidence 89999999999999999999985 456777765 689999999999999985 554 9999998766530
Q ss_pred ------------------------------------------------------------cHHHHHHHHhcCCCcEEEEc
Q psy11935 1112 ------------------------------------------------------------GSHPFSKKLSAAKKPLIVVG 1131 (1334)
Q Consensus 1112 ------------------------------------------------------------g~~~~A~~l~~a~~~~ii~G 1131 (1334)
.|+++|+.|+++++++|++|
T Consensus 240 ~e~l~D~~Fi~~~t~gfd~~~~~~~~~~~~~~~~~~~~~~~dg~~~tpe~a~~itGV~ae~I~~lA~~~a~~~~~~i~~g 319 (617)
T cd02770 240 TENLHDQAFLDRYCVGFDAEHLPEGAPPNESYKDYVLGTGYDGTPKTPEWASEITGVPAETIRRLAREIATTKPAAILQG 319 (617)
T ss_pred HCCCccHHHHHHhccCCCcccCcccCCcccchHHHhcCcccCCCcCCHHHHHHHHCcCHHHHHHHHHHHHhCCCcEEEec
Confidence 14678999999999999999
Q ss_pred CCc---ccHHHHHHH---HHHHHHhhcCCCCCCCCCccccc-----chhhhh---------hhh-hhhcCC----Ccc-h
Q psy11935 1132 ADI---SDGAAVLAL---VQQLAAKVTCESDVPCDWKVLNI-----LQKAAS---------QVA-ALDIGY----KPG-T 1185 (1334)
Q Consensus 1132 ~~~---~~g~~~~~a---l~~l~~~~g~~Gg~~~~~~~~~~-----l~~~~n---------~~G-~~~~g~----~pg-~ 1185 (1334)
+|+ .+|....++ |+.|+|++|++||+.+.+.+... ++...+ ... ....|. .++ .
T Consensus 320 ~g~~~~~~g~~~~~ai~~L~altGnig~~Ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (617)
T cd02770 320 WGPQRHANGEQAARAIMMLAAMTGNVGIPGGNTGARPGGSAYNGAGLPAGKNPVKTSIPCFMWTDAIERGEEMTADDGGV 399 (617)
T ss_pred ccHHHHhhhhHHHHHHHHHHHHhCCCCCCCCCCCcCCCCCCCCcccCCCCCCcccccccHHHHHHHHHCCCceeccCCCc
Confidence 988 566655554 55566777777764322211100 000000 000 000000 000 0
Q ss_pred hhH--hcCCCcEEEEECCChh-hh------HHhhcC----CCceEEEEcCCCChhhccccEEecCCCCCCCCcccccCC-
Q psy11935 1186 SAI--REKPPKVLFLLGADEG-SI------SRDDVG----KDCFIIYQGHHGDHGASIADAILPGAAYTEKQSTYVNTE- 1251 (1334)
Q Consensus 1186 ~~i--~~g~ik~l~~~g~np~-~~------~~~al~----k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~Gt~~n~e- 1251 (1334)
..+ ...+||++|++|+||+ .. ..++|. +++|+|++|+|+|+|+.+||||||+++|+|++|++++.+
T Consensus 400 ~~~~~~~~~ik~l~~~~~Np~~~~~p~~~~~~~al~~~~~kldf~Vv~D~~~teTa~~ADiVLPa~t~~E~~~~~~~~~~ 479 (617)
T cd02770 400 KGADKLKSNIKMIWNYAGNTLINQHSDDNNTTRALLDDESKCEFIVVIDNFMTPSARYADILLPDTTELEREDIVLTSNA 479 (617)
T ss_pred ccccccCCCcEEEEECCCCchhhcCccHHHHHHHHhcccccCCEEEEeccccCchhhhhheecccCcHHhhccccccccc
Confidence 001 1247999999999997 22 234554 469999999999999999999999999999999998766
Q ss_pred ---CceEEeccccCCCCCcccHHHHHHHHHHHhc
Q psy11935 1252 ---GRAQQTLTAVTPPGLAREDWKIIRALSEGVS 1282 (1334)
Q Consensus 1252 ---grvq~~~~av~P~gear~dw~Il~~La~~lg 1282 (1334)
++++..+|+|+|+|++|+||+|+++||++||
T Consensus 480 ~~~~~~~~~~~~i~P~gear~d~~I~~~La~rlG 513 (617)
T cd02770 480 GMMEYLIYSQKAIEPLYECKSDYEICAELAKRLG 513 (617)
T ss_pred CCCceEEeeccccCCCccCcCHHHHHHHHHHHhC
Confidence 7899999999999999999999999999999
No 36
>cd02756 MopB_Arsenite-Ox Arsenite oxidase (Arsenite-Ox) oxidizes arsenite to the less toxic arsenate; it transfers the electrons obtained from the oxidation of arsenite towards the soluble periplasmic electron carriers cytochrome c and/or amicyanin. Arsenite oxidase is a heterodimeric enzyme containing a large and a small subunit. The large catalytic subunit harbors the molybdopterin cofactor and the [3Fe-4S] cluster; and the small subunit belongs to the structural class of the Rieske proteins. The small subunit is not included in this alignment. Members of MopB_Arsenite-Ox CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=3.9e-50 Score=498.27 Aligned_cols=352 Identities=21% Similarity=0.238 Sum_probs=268.8
Q ss_pred eeCCEEEE--ecCCCCCCCCccccccccccccccc-ccc------ccCCceEecCCCCeeecCHHHHHHHHHHHhcc---
Q psy11935 922 TRTGEVLR--VLPRLNEDINEEWLADKGRFAYDGL-KRQ------RLLTPFVRNCDGQLVATEWEDALIAVAQKLQT--- 989 (1334)
Q Consensus 922 v~~g~v~r--i~p~~~~~vn~g~lC~kgr~~~~~l-~~~------Rl~~PliR~~~g~~~~iSWdeAl~~ia~~L~~--- 989 (1334)
++||+.+. |.|++++|+|.|.+|.||.+..+.+ +|+ ||++||+|.+ |+|++|||||||+.||++|++
T Consensus 72 ~~dG~~~~v~i~~d~~~pvN~G~lC~KG~~~~~~~yspdR~~~~~RL~~PLiR~~-g~~~~iSWDeAld~iA~~lk~i~d 150 (676)
T cd02756 72 TQDGREVYIVIVPDKECPVNSGNYSTRGGTNAERIWSPDNRVGETRLTTPLVRRG-GQLQPTTWDDAIDLVARVIKGILD 150 (676)
T ss_pred ccCCcEEEEEEECCCCCCCCCCccChhhhhHHHHhcCccccccccccCCceEccC-CceeEccHHHHHHHHHHHHHHHHH
Confidence 58899976 8899999999999999999999887 576 4999999985 899999999999999999998
Q ss_pred -----CCEEEE----eCCcCCHHHHHHHHHHH-HHhCCCccccCCCCCcchhhhhhhh-hc-cCCCCcccccccCeEEEE
Q psy11935 990 -----SEVAGV----VGSLADAEAMVALKDLL-NKLGSEDLYTEYAFPLEGAGTDLRA-NY-LLNNKIAGAEEADLILLI 1057 (1334)
Q Consensus 990 -----~~i~~~----~g~~~~~e~~~~~~~l~-~~lGs~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~die~ad~Il~~ 1057 (1334)
++|+++ +|+....|..|.+.+|+ ..+|++|++.+...|+.+...+.+. .+ .+++++.|+++||+||+|
T Consensus 151 ~~Gp~~sv~~~~~d~gg~~~~~e~~y~~~k~~~~~lgt~ni~~~~r~c~~s~~~~~~~~G~g~~~~~~~Die~Ad~Il~~ 230 (676)
T cd02756 151 KDGNDDAVFASRFDHGGGGGGFENNWGVGKFFFMALQTPFVRIHNRPAYNSEVHATREMGVGELNNSYEDARLADTIVLW 230 (676)
T ss_pred HhCCccEEEEEeccCCCCCccchhhhHHHHHHHHhcCCCcccccCcCCcCcchhhHHhhcCCCCCCCHHHHHhCCEEEEE
Confidence 245655 34455677778777766 5899999998887787654333331 11 246689999999999999
Q ss_pred cCCccccchhHHH-HHH-----------HHHhhCC-----CeEEEEccCCCCccccc--------------cCCCcHHHH
Q psy11935 1058 GTNPRFEAPLFNA-RIR-----------KGYLTNE-----LDVAYIGPKVDLRYDYE--------------HLGESADLI 1106 (1334)
Q Consensus 1058 G~np~~~~p~~~~-rir-----------~a~~~~g-----~kiivIdp~~~~t~~~a--------------~~Gtd~a~l 1106 (1334)
|+||.+++|+++. ++. +.+.++| +||||||||.+.|+..+ .||||.+|+
T Consensus 231 G~Np~et~pv~~~~~~~~~l~~~~~~~kk~~~~~G~~~~~~klIVVDPR~T~TA~~Ad~~~~~~~~lhL~I~PGTD~AL~ 310 (676)
T cd02756 231 GNNPYETQTVYFLNHWLPNLRGATVSEKQQWFPPGEPVPPGRIIVVDPRRTETVHAAEAAAGKDRVLHLQVNPGTDTALA 310 (676)
T ss_pred CCChHHhCcchHhhhhhhhhhhHHHHHHHhhhhcCCCCCCCEEEEEeCCCcchhHhhhhhcccCcceEEeecCChHHHHH
Confidence 9999999997652 221 1111234 69999999999887654 289999998
Q ss_pred HHHH----------------------hcHHHHHHHHhcCC------CcEEEEcCCc---ccHHHHHHHHH---HHHHhhc
Q psy11935 1107 KQLA----------------------SGSHPFSKKLSAAK------KPLIVVGADI---SDGAAVLALVQ---QLAAKVT 1152 (1334)
Q Consensus 1107 ~~l~----------------------~g~~~~A~~l~~a~------~~~ii~G~~~---~~g~~~~~al~---~l~~~~g 1152 (1334)
.+|+ +.|+++|+.|++++ +++++++.|+ .++...++++. .|+|++|
T Consensus 311 ~al~~~Iie~~~~~~e~aa~itGV~~e~I~~~A~~~a~ak~~~~~~~~~i~~~~Gi~~~~~~~~~~~Ai~nL~llTGniG 390 (676)
T cd02756 311 NAIARYIYESLDEVLAEAEQITGVPRAQIEKAADWIAKPKEGGYRKRVMFEYEKGIIWGNDNYRPIYSLVNLAIITGNIG 390 (676)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhCcccccCCcEEEEecccceecccHHHHHHHHHHHHHHhCCCC
Confidence 7764 12678999999875 5678888877 45555555544 4567777
Q ss_pred CCCCCCCCCcccccchhhhhhhhhhhc-----CCC------cch-hhHhcCCCcEEEEECCChhhh------HHhhcCC-
Q psy11935 1153 CESDVPCDWKVLNILQKAASQVAALDI-----GYK------PGT-SAIREKPPKVLFLLGADEGSI------SRDDVGK- 1213 (1334)
Q Consensus 1153 ~~Gg~~~~~~~~~~l~~~~n~~G~~~~-----g~~------pg~-~~i~~g~ik~l~~~g~np~~~------~~~al~k- 1213 (1334)
++|++....++. ..|.... +.. +-+ ..+..|++|++|++|.||+.. .+++|.+
T Consensus 391 rpG~G~~~~gg~--------~~g~~~p~~~~~~~~~~~~~~~~~~~~l~~G~iK~l~v~g~NP~~s~pn~~~v~~al~~~ 462 (676)
T cd02756 391 RPGTGCVRQGGH--------QEGYVRPPPPPPPWYPQYQYAPYIDQLLISGKGKVLWVIGCDPYKTTPNAQRLRETINHR 462 (676)
T ss_pred CCCCcccccCcc--------ccCCCCCCCCCCcccCccchHHHHHHHHhCCCceEEEEecCChhhhCcCHHHHHHHHHhh
Confidence 777543211110 0111100 000 111 244679999999999999642 3445542
Q ss_pred ---------------------------------CceEEEEcCCCChhhccccEEecCCCCCCCCcccccC-CCceEEecc
Q psy11935 1214 ---------------------------------DCFIIYQGHHGDHGASIADAILPGAAYTEKQSTYVNT-EGRAQQTLT 1259 (1334)
Q Consensus 1214 ---------------------------------~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~Gt~~n~-egrvq~~~~ 1259 (1334)
.+|+|++|+|+|+|+.+||||||+++|+|++|+++|. ++++|..++
T Consensus 463 ~~~v~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~fvVv~D~~~teTa~~ADvVLPaa~~~E~~gt~~n~~errv~~~~k 542 (676)
T cd02756 463 SKLVTDAVEAALYAGTYDREAMVCLIGDAIQPGGLFIVVQDIYPTKLAEDAHVILPAAANGEMNETSMNGHERRLRLYEK 542 (676)
T ss_pred hhhhhhhhhhccccccccchhhhhhhhhhccCCCCEEEEEecCCCchhhhCcEEeCCCCccccCCeecccCCceEEEecc
Confidence 1699999999999999999999999999999999999 999999999
Q ss_pred ccCCCCCcccHHHHHHHHHHHhc
Q psy11935 1260 AVTPPGLAREDWKIIRALSEGVS 1282 (1334)
Q Consensus 1260 av~P~gear~dw~Il~~La~~lg 1282 (1334)
+|+|||++|+||+|+++||++||
T Consensus 543 ~v~Ppgear~D~~I~~~lA~rl~ 565 (676)
T cd02756 543 FMDPPGEAMPDWWIAAMIANRIY 565 (676)
T ss_pred ccCCCccCccHHHHHHHHHHHHH
Confidence 99999999999999999999998
No 37
>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. Members of the MopB_DMSOR-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=5e-50 Score=506.09 Aligned_cols=358 Identities=19% Similarity=0.223 Sum_probs=276.4
Q ss_pred CCCceEEEeeCCEEEEecCCCCCCCCccccccccccccccc-cccccCCceEecC-------------CCCeeecCHHHH
Q psy11935 914 VGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGL-KRQRLLTPFVRNC-------------DGQLVATEWEDA 979 (1334)
Q Consensus 914 ~gC~i~v~v~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l-~~~Rl~~PliR~~-------------~g~~~~iSWdeA 979 (1334)
.||++.|+|+||+|+||+|++++ +|++|.||+++++.+ +|+||++||+|++ +|+|++||||||
T Consensus 5 ~~C~i~v~v~dG~vvrv~g~~~~---~g~lC~kG~~~~~~~y~pdRl~~Pl~R~g~rg~~~~~~~~~g~g~~~~iSWDEA 81 (609)
T cd02751 5 HWGPFKAHVKDGVIVRVEPDDTD---QPRPCPRGRSVRDRVYSPDRIKYPMKRVGWLGNGPGSRELRGEGEFVRISWDEA 81 (609)
T ss_pred ccCceEEEEECCEEEEEecCCCC---CcCcChhhhhhhhhccChhhhcCCeeeccccccCCcccccCCCCCEEEecHHHH
Confidence 39999999999999999999887 899999999999988 6999999999974 689999999999
Q ss_pred HHHHHHHhcc-------CCEEEEeCCcCC----HHHHHHHHHHHHHhCCCccccCCCCCcchhhhhhhhhcc------CC
Q psy11935 980 LIAVAQKLQT-------SEVAGVVGSLAD----AEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYL------LN 1042 (1334)
Q Consensus 980 l~~ia~~L~~-------~~i~~~~g~~~~----~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~------~~ 1042 (1334)
|+.||++|++ ++|++..++..+ .+..+++.+|++.+|+. +++...+|+.+...++...++ .+
T Consensus 82 l~~iA~kl~~i~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~-~~~~~~~c~~~~~~~~~~~~G~~~~~~~~ 160 (609)
T cd02751 82 LDLVASELKRIREKYGNEAIFGGSYGWASAGRLHHAQSLLHRFLNLIGGY-LGSYGTYSTGAAQVILPHVVGSDEVYEQG 160 (609)
T ss_pred HHHHHHHHHHHHHHhCcceeecccCCcccccccccchHHHHHHHHhcCCC-cCCCCCccHHHHHhHhhhEEccchhccCC
Confidence 9999999987 445443333221 23457789999999874 444556776544444444443 24
Q ss_pred CCcccccc-cCeEEEEcCCccccchhHH--------HHHHHHHhhCCCeEEEEccCCCCccc-ccc------CCCcHHHH
Q psy11935 1043 NKIAGAEE-ADLILLIGTNPRFEAPLFN--------ARIRKGYLTNELDVAYIGPKVDLRYD-YEH------LGESADLI 1106 (1334)
Q Consensus 1043 ~~~~die~-ad~Il~~G~np~~~~p~~~--------~rir~a~~~~g~kiivIdp~~~~t~~-~a~------~Gtd~a~l 1106 (1334)
.++.|+.+ ||+||+||+||.+++|+.+ .+++++. ++|+||||||||++.|+. .++ ||||.+++
T Consensus 161 ~~~~D~~~~ad~il~wG~N~~~~~~~~~~~~~~~~~~~~~~a~-~~GakiivIDPr~s~ta~~~AD~~l~irPGtD~aL~ 239 (609)
T cd02751 161 TSWDDIAEHSDLVVLFGANPLKTRQGGGGGPDHGSYYYLKQAK-DAGVRFICIDPRYTDTAAVLAAEWIPIRPGTDVALM 239 (609)
T ss_pred CChhhHHhcCCEEEEECCCHHHhcCCCCCccCcchHHHHHHHH-HCCCeEEEECCCCCccccccCCEEECCCCCcHHHHH
Confidence 57899986 9999999999999998653 6788775 689999999999999987 454 99999987
Q ss_pred HHHH--------------------------------------------------hcHHHHHHHHhcCCCcEEEEcCCc--
Q psy11935 1107 KQLA--------------------------------------------------SGSHPFSKKLSAAKKPLIVVGADI-- 1134 (1334)
Q Consensus 1107 ~~l~--------------------------------------------------~g~~~~A~~l~~a~~~~ii~G~~~-- 1134 (1334)
.+|+ +.|+++|+.|++ ++++|++|.|+
T Consensus 240 lam~~~ii~~~~~D~~fi~~~t~gfe~~~~~l~g~~dg~~~tpe~aa~itGv~~~~I~~lA~~~a~-~~~~i~~g~g~~~ 318 (609)
T cd02751 240 LAMAHTLITEDLHDQAFLARYTVGFDEFKDYLLGESDGVPKTPEWAAEITGVPAETIRALAREIAS-KRTMIAQGWGLQR 318 (609)
T ss_pred HHHHHHHHHCcchhHHHHHHHccCcHHHHHHhccCCCCccCCHHHHHHHHCcCHHHHHHHHHHHhc-CCcEEeccchHHh
Confidence 6653 115678999998 88899999886
Q ss_pred -ccHHHHHHH---HHHHHHhhcCCCCCCCCCcccccchhhhhhhhhhhcC---------CCcc---------hhhH----
Q psy11935 1135 -SDGAAVLAL---VQQLAAKVTCESDVPCDWKVLNILQKAASQVAALDIG---------YKPG---------TSAI---- 1188 (1334)
Q Consensus 1135 -~~g~~~~~a---l~~l~~~~g~~Gg~~~~~~~~~~l~~~~n~~G~~~~g---------~~pg---------~~~i---- 1188 (1334)
.+|..+.++ |..|+|++|++||+.. +.+...+..|..++| ..|. .+.+
T Consensus 319 ~~ng~~~~rai~~L~~ltGn~g~~Gg~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 392 (609)
T cd02751 319 AHHGEQPAWMLVTLAAMLGQIGLPGGGFG------FGYGYSNGGGPPRGGAGGPGLPQGKNPVKDSIPVARIADALLNPG 392 (609)
T ss_pred HhcccHHHHHHHHHHHHhCCCCCCCCCcc------cccccCCCCCccccccCcccCCCCCCCcceEeeHhhHHHHHhCCC
Confidence 455555544 5556667777765321 111111111111100 0010 1122
Q ss_pred ----------hcCCCcEEEEECCChhh------hHHhhcCCCceEEEEcCCCChhhccccEEecCCCCCCCCccccc---
Q psy11935 1189 ----------REKPPKVLFLLGADEGS------ISRDDVGKDCFIIYQGHHGDHGASIADAILPGAAYTEKQSTYVN--- 1249 (1334)
Q Consensus 1189 ----------~~g~ik~l~~~g~np~~------~~~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~Gt~~n--- 1249 (1334)
..+++|++|++|+||+. ...++|++++|+|++|+|+|+|+.+||||||+++|+|++|++.+
T Consensus 393 ~~~~~~~~~~~~~~ik~l~~~~~Np~~~~p~~~~~~~al~~~df~Vv~d~~~teTa~~ADvVLP~~~~~E~~~~~~~~~~ 472 (609)
T cd02751 393 KEFTANGKLKTYPDIKMIYWAGGNPLHHHQDLNRLIKALRKDETIVVHDIFWTASARYADIVLPATTSLERNDIGLTGNY 472 (609)
T ss_pred CeEeecCcccCCCCEEEEEECCCChhhcCcchHHHHHHHhcCCEEEEEccCCCCccccCCEEeccCchhhccCccccCCC
Confidence 24689999999999964 35788999999999999999999999999999999999998765
Q ss_pred CCCceEEeccccCCCCCcccHHHHHHHHHHHhcC
Q psy11935 1250 TEGRAQQTLTAVTPPGLAREDWKIIRALSEGVSS 1283 (1334)
Q Consensus 1250 ~egrvq~~~~av~P~gear~dw~Il~~La~~lg~ 1283 (1334)
.+++++..+|+|+|+|++|+||+|++.||++||.
T Consensus 473 ~~~~~~~~~~~i~P~ge~r~d~~I~~~La~~lg~ 506 (609)
T cd02751 473 SNRYLIAMKQAVEPLGEARSDYEIFAELAKRLGV 506 (609)
T ss_pred CCceEEEeccccCCcccccCHHHHHHHHHHHhCC
Confidence 3899999999999999999999999999999993
No 38
>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins. The phenylacetyl-CoA:acceptor oxidoreductase has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=8.2e-49 Score=496.86 Aligned_cols=376 Identities=15% Similarity=0.130 Sum_probs=274.5
Q ss_pred eeecccCCCCCceE-EEeeCCEEEEecCCCC---CCCCccccccccccccccc-cccccCCceEecC-------CCCeee
Q psy11935 906 ESVDVLDAVGSNII-VSTRTGEVLRVLPRLN---EDINEEWLADKGRFAYDGL-KRQRLLTPFVRNC-------DGQLVA 973 (1334)
Q Consensus 906 ~s~c~~C~~gC~i~-v~v~~g~v~ri~p~~~---~~vn~g~lC~kgr~~~~~l-~~~Rl~~PliR~~-------~g~~~~ 973 (1334)
+|+|.+|+.||++. ++|+||+|+||+|+++ +++|+|++|+||+++++.+ +|+||++||+|++ +|+|++
T Consensus 1 pT~C~~C~~gCgi~~v~v~dG~vvrV~gn~~~~~~~~n~G~lC~KG~~~~~~ly~pdRL~~PLkR~g~k~G~~~dg~~~~ 80 (760)
T cd02760 1 PTYCYNCVAGPDFMAVKVVDGVATEIEPNFAAEDIHPARGRVCVKAYGLVQKTYNPNRVLQPMKRTNPKKGRNEDPGFVP 80 (760)
T ss_pred CccCCCccccCCeeEEEEECCEEEEEECCCccccCCCCCCccChhhhhhHhhhcCchhhcCCeeccCCCCCCcCCCCeeE
Confidence 58999999999996 6899999999999987 7889999999999999998 6999999999973 379999
Q ss_pred cCHHHHHHHHHHHhcc---CC---------E-EEEeCCcCCHHHHHHHHHHHHHhCCCccccCCC--CCcchhhhhhhhh
Q psy11935 974 TEWEDALIAVAQKLQT---SE---------V-AGVVGSLADAEAMVALKDLLNKLGSEDLYTEYA--FPLEGAGTDLRAN 1038 (1334)
Q Consensus 974 iSWdeAl~~ia~~L~~---~~---------i-~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~--~~~~~~~~~~~~~ 1038 (1334)
|||||||+.||++|++ .. + +.++++..+.+.+..+.+|++.+|++|+++..+ .|.......++..
T Consensus 81 ISWDEAld~IA~kL~~i~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~~Gs~n~~~~~~~~~~~~~~~~~~G~~ 160 (760)
T cd02760 81 ISWDEALDLVAAKLRRVREKGLLDEKGLPRLAATFGHGGTPAMYMGTFPAFLAAWGPIDFSFGSGQGVKCVHSEHLYGEF 160 (760)
T ss_pred eCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEecCCCchHHHHHHHHHHHHHhCCCcccccCCccccccchhhhhccc
Confidence 9999999999999987 21 2 223445555556677889999999998765332 1211111111111
Q ss_pred cc-CCCCcccccccCeEEEEcCCccccc-hhHHHHHHHHHhhCCCeEEEEccCCCCcccccc------CCCcHHHHHHHH
Q psy11935 1039 YL-LNNKIAGAEEADLILLIGTNPRFEA-PLFNARIRKGYLTNELDVAYIGPKVDLRYDYEH------LGESADLIKQLA 1110 (1334)
Q Consensus 1039 ~~-~~~~~~die~ad~Il~~G~np~~~~-p~~~~rir~a~~~~g~kiivIdp~~~~t~~~a~------~Gtd~a~l~~l~ 1110 (1334)
.. ...++.|+++||+||+||+||..++ |+...++.++ +++|+||||||||++.|+..++ ||||++++.+|+
T Consensus 161 ~~~~~~~~~D~~~ad~Il~~G~Np~~s~~~~~~~~~~~a-r~~GaKlIvVDPr~t~ta~~AD~wlpirPGTD~AL~lam~ 239 (760)
T cd02760 161 WHRAFTVAADTPLANYVISFGSNVEASGGPCAVTRHADA-RVRGYKRVQVEPHLSVTGACSAEWVPIRPKTDPAFMFAMI 239 (760)
T ss_pred ccCCCCccchHhcCCEEEEECCCchHhcCcHHHHHHHHH-HHcCCeEEEEcCCCCcchhhcCeEeCcCCCcHHHHHHHHH
Confidence 11 1135789999999999999998775 4555566665 4689999999999999988765 999998865442
Q ss_pred -----h--------------------------------------------------------------------------
Q psy11935 1111 -----S-------------------------------------------------------------------------- 1111 (1334)
Q Consensus 1111 -----~-------------------------------------------------------------------------- 1111 (1334)
+
T Consensus 240 ~~Ii~e~~~~lyD~~Fl~~~Tn~p~Lv~~d~~~lr~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~ 319 (760)
T cd02760 240 HVMVHEQGLGKLDVPFLRDRTSSPYLVGPDGLYLRDAATGKPLVWDERSGRAVPFDTRGAVPAVAGDFAVDGAVSVDADD 319 (760)
T ss_pred HHHHhccccccchHHHHHHhCCCceEEecCCceeeccccCCeEEEECCCCccccccccccccccccccccccceeecccc
Confidence 1
Q ss_pred --------------------------------------cHHHHHHHHhcC----------------CCcEEEEcCCc---
Q psy11935 1112 --------------------------------------GSHPFSKKLSAA----------------KKPLIVVGADI--- 1134 (1334)
Q Consensus 1112 --------------------------------------g~~~~A~~l~~a----------------~~~~ii~G~~~--- 1134 (1334)
.|+++|+.|+++ ++++|++|.|+
T Consensus 320 ~~~~~~~~~~~t~F~~l~e~~~~yTpE~aaeItGVpa~~Ir~lAr~~a~~a~~g~~~~~~g~~~~~~p~~i~~g~G~~~~ 399 (760)
T cd02760 320 ETAIHQGVEGTTAFTMLVEHMRKYTPEWAESICDVPAATIRRIAREFLENASIGSTIEVDGVTLPYRPVAVTLGKSVNNG 399 (760)
T ss_pred cccccCCcccccHHHHHHHHHhcCCHHHHHHHHCcCHHHHHHHHHHHHhccccCcccccccccccCCceEEEeCcccccc
Confidence 135689999887 45677788887
Q ss_pred ccHHHHHH---HHHHHHHhhcCCCCCCCCCcccc-cch----h-hhhhhh------------------------------
Q psy11935 1135 SDGAAVLA---LVQQLAAKVTCESDVPCDWKVLN-ILQ----K-AASQVA------------------------------ 1175 (1334)
Q Consensus 1135 ~~g~~~~~---al~~l~~~~g~~Gg~~~~~~~~~-~l~----~-~~n~~G------------------------------ 1175 (1334)
.+|.+..+ .|+.|+|++|.+||+.+...+.+ +.. . .....|
T Consensus 400 ~ng~~~~rAi~~L~aLtGnig~pGG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 479 (760)
T cd02760 400 WGAFECCWARTLLATLVGALEVPGGTLGTTVRLNRPHDDRLASVKPGEDGFMAQGFNPTDKEHWVVKPTGRNAHRTLVPI 479 (760)
T ss_pred cccHHHHHHHHHHHHHhCCCCCCCccccCCCCcCcccccccccccCccccccccccccccccccCCCccccccccccccc
Confidence 56665555 46667778888876421110000 000 0 000000
Q ss_pred --hhh----cCCCc-c----hhh-----Hhc-CCCcEEEEECCChhhh------HHhhcCCCceEEEEcCCCChhhcccc
Q psy11935 1176 --ALD----IGYKP-G----TSA-----IRE-KPPKVLFLLGADEGSI------SRDDVGKDCFIIYQGHHGDHGASIAD 1232 (1334)
Q Consensus 1176 --~~~----~g~~p-g----~~~-----i~~-g~ik~l~~~g~np~~~------~~~al~k~~fvV~~d~~~~eta~~AD 1232 (1334)
... .|... + ... +.. .+|+++|++|+||+.. ..++|.+++|+|++|+|+|+|+.|||
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ik~~~~~~~Np~~s~pd~~~~~eal~kldf~V~~D~~~teTa~~AD 559 (760)
T cd02760 480 VGNSAWSQALGPTQLAWMFLREVPLDWKFELPTLPDVWFNYRTNPAISFWDTATLVDNIAKFPFTVSFAYTEDETNWMAD 559 (760)
T ss_pred cccchhhhcccccccccccccchhhhhccCCCCCceEEEEeCCCHHHhCCCHHHHHHHHhcCCeEEEEeCCcCchHhhhh
Confidence 000 00000 0 000 011 2599999999999653 47899999999999999999999999
Q ss_pred EEecCCCCCCCCccccc----------CCCceEEeccccCCCCCcccHHHHHHHHHHHhc
Q psy11935 1233 AILPGAAYTEKQSTYVN----------TEGRAQQTLTAVTPPGLAREDWKIIRALSEGVS 1282 (1334)
Q Consensus 1233 vVLP~a~~~Ek~Gt~~n----------~egrvq~~~~av~P~gear~dw~Il~~La~~lg 1282 (1334)
||||+++|+|+++...+ .+++++..+|+|+|+||+|+||+|+.+||++||
T Consensus 560 iVLP~at~lEr~d~~~~~~~~~~~~~~~~~~~~~~~pvVeP~gEar~d~eI~~eLA~rlG 619 (760)
T cd02760 560 VLLPEATDLESLQMIKVGGTKFVEQFWEHRGVVLRQPAVEPQGEARDFTWISTELAKRTG 619 (760)
T ss_pred eeecCCCcccccCccccCCccccccccccceeeeeccCCCCCCCCcCHHHHHHHHHHHhC
Confidence 99999999999875322 356799999999999999999999999999999
No 39
>TIGR02166 dmsA_ynfE anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.
Probab=100.00 E-value=6.2e-49 Score=512.44 Aligned_cols=380 Identities=16% Similarity=0.163 Sum_probs=284.1
Q ss_pred ceeeeeeccc-CCCCCceEEEeeCCEEEEecCCCCC----CCCccccccccccccccc-cccccCCceEecC---CCCee
Q psy11935 902 TRKTESVDVL-DAVGSNIIVSTRTGEVLRVLPRLNE----DINEEWLADKGRFAYDGL-KRQRLLTPFVRNC---DGQLV 972 (1334)
Q Consensus 902 ~~~~~s~c~~-C~~gC~i~v~v~~g~v~ri~p~~~~----~vn~g~lC~kgr~~~~~l-~~~Rl~~PliR~~---~g~~~ 972 (1334)
.+.++|+|++ |+.||++.|+|+||+|++|.|++++ +.|.|++|.||++.++.+ +|+||++||+|.+ +|+|+
T Consensus 42 ~~~~~t~C~~~C~~~C~l~v~v~dg~v~~v~g~~~~~~~~~~~~g~~C~kG~~~~~~~y~p~Rl~~Pl~R~g~rG~g~~~ 121 (797)
T TIGR02166 42 EKVVWSACTVNCGSRCPLRVHVKDGEITRIETDNTGDDEYGNHQVRACLRGRSMRRRVYNPDRLKYPMKRVGKRGEGKFE 121 (797)
T ss_pred ceEEecccCCCCCCCCceEEEEECCEEEEEeCCCCCCcccccccCCcChhhhhHHHhhcChhhhccCeeeccCCCCCCeE
Confidence 5788999996 9999999999999999999998753 456789999999999998 6999999999974 58999
Q ss_pred ecCHHHHHHHHHHHhcc-------CCEEEEeCCcC-C-----HHHHHHHHHHHHHhCCCccccCCCCCcchhhhhhhhhc
Q psy11935 973 ATEWEDALIAVAQKLQT-------SEVAGVVGSLA-D-----AEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANY 1039 (1334)
Q Consensus 973 ~iSWdeAl~~ia~~L~~-------~~i~~~~g~~~-~-----~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~ 1039 (1334)
+||||||+++||++|++ ++++++.|... . .+..+.+.+|++.+|+.+. .....|......++...|
T Consensus 122 ~iSWdeAl~~ia~kl~~i~~~~G~~sv~~~~g~g~~~~~~~~~~~~~~~~r~~~~~g~~~~-~~~~~~~~~~~~~~~~~~ 200 (797)
T TIGR02166 122 RISWDEATDTIADNLKRIIEKYGNEAIYVNYGTGTTGGTMSRSWPPTAVARLLNLCGGYLN-QYGSYSTAQINEAMPYTY 200 (797)
T ss_pred EecHHHHHHHHHHHHHHHHHHhCccceEeecccccccccccccchhHHHHHHHHHhCCccc-cCCCeecchhhcccceeE
Confidence 99999999999999987 45665433221 1 2233578899998886322 222344433222333334
Q ss_pred c---CCCCcccccccCeEEEEcCCccccch---hHHHHHHHHHhhCCCeEEEEccCCCCccc-ccc------CCCcHHHH
Q psy11935 1040 L---LNNKIAGAEEADLILLIGTNPRFEAP---LFNARIRKGYLTNELDVAYIGPKVDLRYD-YEH------LGESADLI 1106 (1334)
Q Consensus 1040 ~---~~~~~~die~ad~Il~~G~np~~~~p---~~~~rir~a~~~~g~kiivIdp~~~~t~~-~a~------~Gtd~a~l 1106 (1334)
| .+.++.|+++||+||+||+||.+++| ....++.++++++|+|||||||+++.|++ .++ ||||.+|+
T Consensus 201 G~~~~~~~~~D~~~a~~il~~G~N~~~s~~~~~~~~~~~~~~~~~~G~kiivvDPr~t~taa~~Ad~~l~irPGtD~al~ 280 (797)
T TIGR02166 201 GISADGSSLDDIENSKLVVMFGNNPAETRMSGGGQTYYFLQALEKSNARVIVIDPRYTDTVAGREDEWIPIRPGTDAALV 280 (797)
T ss_pred eecCCCCCHHHHHhCCEEEEECCCHHHhcCCCcchHHHHHHHHHHCCCeEEEECCCCCccchhcCCEEECCCCCCHHHHH
Confidence 3 34578999999999999999999998 56667777766789999999999999874 554 99999987
Q ss_pred HHHH---------------------------------------------------------------hcHHHHHHHHhcC
Q psy11935 1107 KQLA---------------------------------------------------------------SGSHPFSKKLSAA 1123 (1334)
Q Consensus 1107 ~~l~---------------------------------------------------------------~g~~~~A~~l~~a 1123 (1334)
.+|+ +.|+++|+.|+.+
T Consensus 281 ~a~~~~ii~e~l~D~~Fi~~~t~gfd~~~~~~~~~~~~~~~~~~~~~~~~~~~~tpe~aa~itGV~~~~I~~lA~~~a~~ 360 (797)
T TIGR02166 281 AAIAYVMISENLHDQAFLDRYCVGFDEKTLPASAPKNGSYKDYILGEGADGTPKTPEWASKITGIPADTIIKLAREIGNA 360 (797)
T ss_pred HHHHHHHHHCCcccHHHHHHhccccCCccCccccccccchHhhhcCcccCCCcCCHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 6653 0146789999999
Q ss_pred CCcEEEEcCCc---ccHHHHHHH---HHHHHHhhcCCCCCCCCCcccc--cchhh---hh---------hhh-hhhcCC-
Q psy11935 1124 KKPLIVVGADI---SDGAAVLAL---VQQLAAKVTCESDVPCDWKVLN--ILQKA---AS---------QVA-ALDIGY- 1181 (1334)
Q Consensus 1124 ~~~~ii~G~~~---~~g~~~~~a---l~~l~~~~g~~Gg~~~~~~~~~--~l~~~---~n---------~~G-~~~~g~- 1181 (1334)
++++|++|+|+ .+|....++ |+.|+|++|++||+.+...+.. .+++. .+ .++ ....|.
T Consensus 361 ~~~~i~~g~G~~~~~~g~~~~~ai~~L~aLtGnig~~Ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (797)
T TIGR02166 361 KPAFISQGWGPQRHANGEQAARAIMMLALLTGNVGIKGGNNGAREGNYSLPFARMPELPNPVKTSISCFLWTDAIDRGTE 440 (797)
T ss_pred CCcEEEechhhhhhhcchHHHHHHHHHHHHhCCCCCCCcCCccCCCCCCCCCCCCCCCCCCccccccHHHHHHHHhcCCc
Confidence 99999999887 566555544 5566777778876532221110 01000 00 000 000010
Q ss_pred ----Ccchh--hHhcCCCcEEEEECCChhh-------hHHhhcC---CCceEEEEcCCCChhhccccEEecCCCCCCCCc
Q psy11935 1182 ----KPGTS--AIREKPPKVLFLLGADEGS-------ISRDDVG---KDCFIIYQGHHGDHGASIADAILPGAAYTEKQS 1245 (1334)
Q Consensus 1182 ----~pg~~--~i~~g~ik~l~~~g~np~~-------~~~~al~---k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~G 1245 (1334)
.+++. .+..+++|++|++|+||+. .+.++|. +++|+|++|+|+|+|+.|||||||+++|+|++|
T Consensus 441 ~~~~~~~~~~~~~~~~~ik~l~~~~~Np~~~~~p~~~~~~~al~~~~~ldf~Vv~D~~~teTa~~ADiVLPa~t~lE~~~ 520 (797)
T TIGR02166 441 MTAIKDGVRGKDKLDSNIKFLWNYAGNCLINQHSDINRTHKILQDESKCEMIVVIDNHMTSSAKYADILLPDTTTLEQND 520 (797)
T ss_pred cccccCCccCCccCCCCeEEEEEcCCCceeccchhHHHHHHHhhcccCCCEEEEeecccCcchhhccEEecCCCccccCc
Confidence 11111 1124689999999999952 1356775 789999999999999999999999999999999
Q ss_pred ccccCC----CceEEeccccCCCCCcccHHHHHHHHHHHhc
Q psy11935 1246 TYVNTE----GRAQQTLTAVTPPGLAREDWKIIRALSEGVS 1282 (1334)
Q Consensus 1246 t~~n~e----grvq~~~~av~P~gear~dw~Il~~La~~lg 1282 (1334)
++.+.. ++++..+|+|+|+|++|+||+|+.+||++||
T Consensus 521 ~~~~~~~~~~~~~~~~~~~v~P~~e~r~d~~I~~~LA~~lG 561 (797)
T TIGR02166 521 FIEDSYASNMSYLIFMQKAIEPLFECKPIYDMLSEVAKRLG 561 (797)
T ss_pred cccccccCCCceEEEeccCcCCcccccCHHHHHHHHHHHhC
Confidence 986654 6899999999999999999999999999999
No 40
>PRK14990 anaerobic dimethyl sulfoxide reductase subunit A; Provisional
Probab=100.00 E-value=7.4e-49 Score=511.20 Aligned_cols=380 Identities=15% Similarity=0.160 Sum_probs=282.1
Q ss_pred ceeeeeeccc-CCCCCceEEEeeCCEEEEecCCCCC-----CCCccccccccccccccc-cccccCCceEecC---CCCe
Q psy11935 902 TRKTESVDVL-DAVGSNIIVSTRTGEVLRVLPRLNE-----DINEEWLADKGRFAYDGL-KRQRLLTPFVRNC---DGQL 971 (1334)
Q Consensus 902 ~~~~~s~c~~-C~~gC~i~v~v~~g~v~ri~p~~~~-----~vn~g~lC~kgr~~~~~l-~~~Rl~~PliR~~---~g~~ 971 (1334)
.+.+.|+|++ |+.||++.|+|+||+|++|+|++++ ++|+|++|.||++.++.+ +|+||++||+|++ +|+|
T Consensus 56 ~~~~~t~C~~~C~~~C~l~v~v~dG~v~~v~~~~~~~~~~~~~~~g~~C~kG~~~~~~~y~pdRl~~Pl~R~g~rG~g~~ 135 (814)
T PRK14990 56 EKVIWSACTVNCGSRCPLRMHVVDGEIKYVETDNTGDDNYDGLHQVRACLRGRSMRRRVYNPDRLKYPMKRVGARGEGKF 135 (814)
T ss_pred ceEEeccCCCCcCCCCceEEEEECCEEEEEecCCCCCcccccccCcCcChhhHhHHHhhcChhhhCCCeEecccCCCCCe
Confidence 4788999995 9999999999999999999999764 578999999999999998 6999999999974 6899
Q ss_pred eecCHHHHHHHHHHHhcc-------CCEEEEeC-CcC-------CHHHHHHHHHHHHHhCCCccccCCCCCcchhhhhhh
Q psy11935 972 VATEWEDALIAVAQKLQT-------SEVAGVVG-SLA-------DAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLR 1036 (1334)
Q Consensus 972 ~~iSWdeAl~~ia~~L~~-------~~i~~~~g-~~~-------~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~ 1036 (1334)
++|||||||++||++|++ ++|+++.+ +.. ..+..+++.+|++.+|+.. .+...+|......++.
T Consensus 136 ~~iSWdEAl~~Ia~kl~~i~~~~G~~ai~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~ 214 (814)
T PRK14990 136 ERISWEEAYDIIATNMQRLIKEYGNESIYLNYGTGTLGGTMTRSWPPGNTLVARLMNCCGGYL-NHYGDYSSAQIAEGLN 214 (814)
T ss_pred EEeCHHHHHHHHHHHHHHHHHhhCccceEEeecccccCcccccccccchHHHHHHHHhccCcc-cCCCCccHHHHhhhhh
Confidence 999999999999999986 56655433 211 1245678899999887632 2222333322222333
Q ss_pred hhcc---CCCCcccccccCeEEEEcCCccccchh---HHHHHHHHHhhCCCeEEEEccCCCCccc-ccc------CCCcH
Q psy11935 1037 ANYL---LNNKIAGAEEADLILLIGTNPRFEAPL---FNARIRKGYLTNELDVAYIGPKVDLRYD-YEH------LGESA 1103 (1334)
Q Consensus 1037 ~~~~---~~~~~~die~ad~Il~~G~np~~~~p~---~~~rir~a~~~~g~kiivIdp~~~~t~~-~a~------~Gtd~ 1103 (1334)
.+|| .+.++.|+++||+||+||+||.+++|. +..+++++++++|+||||||||++.|+. .++ ||||.
T Consensus 215 ~~~G~~~~~~~~~D~~~ad~il~~G~N~~~t~~~~~~~~~~~~~a~~~~G~klivIDPr~t~taa~~AD~~l~irPGTD~ 294 (814)
T PRK14990 215 YTYGGWADGNSPSDIENSKLVVLFGNNPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYTDTGAGREDEWIPIRPGTDA 294 (814)
T ss_pred ceeccCCCCCCHHHHhhCCEEEEECCChHHhcCCCCcHHHHHHHHHHHCCCeEEEECCCCCCcccccCCeEECCCCCcHH
Confidence 3343 356789999999999999999999874 4567877765689999999999999974 554 99999
Q ss_pred HHHHHHH---------------------------------------------------------------hcHHHHHHHH
Q psy11935 1104 DLIKQLA---------------------------------------------------------------SGSHPFSKKL 1120 (1334)
Q Consensus 1104 a~l~~l~---------------------------------------------------------------~g~~~~A~~l 1120 (1334)
+|+.+|+ +.|+++|+.|
T Consensus 295 al~lam~~~ii~e~l~D~~fv~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~dg~~~tpe~aa~itGV~a~~I~~lA~~~ 374 (814)
T PRK14990 295 ALVNGLAYVMITENLVDQPFLDKYCVGYDEKTLPASAPKNGHYKAYILGEGPDGVAKTPEWASQITGVPADKIIKLAREI 374 (814)
T ss_pred HHHHHHHHHHHHcCcccHHHHHhhccccCcccccccccccccHHHHhcccccCCCcCCHHHHHhhHCcCHHHHHHHHHHH
Confidence 9876553 0145689999
Q ss_pred hcCCCcEEEEcCCc---ccHHHHHHH---HHHHHHhhcCCCCCCCCCcccc--c---chhhhh-hhhhhhcC-----CCc
Q psy11935 1121 SAAKKPLIVVGADI---SDGAAVLAL---VQQLAAKVTCESDVPCDWKVLN--I---LQKAAS-QVAALDIG-----YKP 1183 (1334)
Q Consensus 1121 ~~a~~~~ii~G~~~---~~g~~~~~a---l~~l~~~~g~~Gg~~~~~~~~~--~---l~~~~n-~~G~~~~g-----~~p 1183 (1334)
+.+++++|++|+|. .+|....++ |..|+|++|++||+.+.+.+.. + ++...+ ..+..+++ ..+
T Consensus 375 a~~~~~~i~~g~g~~~~~~g~~~~rai~~L~aLtGnig~~Gg~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (814)
T PRK14990 375 GSTKPAFISQGWGPQRHANGEIATRAISMLAILTGNVGINGGNSGAREGSYSLPFVRMPTLENPIQTSISMFMWTDAIER 454 (814)
T ss_pred HhcCCcEEEcchhHHHhhhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCcccCCCCCCCccceecHHHHHHHHHc
Confidence 99998899999887 667666555 5556677777876532221100 0 000000 00000000 000
Q ss_pred c------hhhHh-----cCCCcEEEEECCChhh-------hHHhhc---CCCceEEEEcCCCChhhccccEEecCCCCCC
Q psy11935 1184 G------TSAIR-----EKPPKVLFLLGADEGS-------ISRDDV---GKDCFIIYQGHHGDHGASIADAILPGAAYTE 1242 (1334)
Q Consensus 1184 g------~~~i~-----~g~ik~l~~~g~np~~-------~~~~al---~k~~fvV~~d~~~~eta~~ADvVLP~a~~~E 1242 (1334)
+ .+.+. ..+|+++|++|+||.. .+.++| ++++|+|++|+|+|+||.|||||||+++|+|
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~ik~l~~~~~Np~~~~~p~~~~~~~al~~~~~ldf~Vv~D~~~t~Ta~~ADiVLPa~t~~E 534 (814)
T PRK14990 455 GPEMTALRDGVRGKDKLDVPIKMIWNYAGNCLINQHSEINRTHEILQDDKKCELIVVIDCHMTSSAKYADILLPDCTASE 534 (814)
T ss_pred CCccccccccccCCccCCCCcEEEEEcCCCCeeecchHHHHHHHHhcccCCCCEEEEecCccCchhhhhheeccCCChHh
Confidence 1 11221 1369999999999842 246788 5799999999999999999999999999999
Q ss_pred CCcccc-cC---CCceEEeccccCCCCCcccHHHHHHHHHHHhc
Q psy11935 1243 KQSTYV-NT---EGRAQQTLTAVTPPGLAREDWKIIRALSEGVS 1282 (1334)
Q Consensus 1243 k~Gt~~-n~---egrvq~~~~av~P~gear~dw~Il~~La~~lg 1282 (1334)
+++.+. +. ..+++..+|+|+|+||+|+||+|+.+||++||
T Consensus 535 ~~d~~~~~~~~~~~~v~~~~~~i~P~gesk~d~~I~~~LA~rlG 578 (814)
T PRK14990 535 QMDFALDASCGNMSYVIFNDQVIKPRFECKTIYEMTSELAKRLG 578 (814)
T ss_pred cCccccccccCCCceEEeeccccCCccccCCHHHHHHHHHHHhC
Confidence 998542 12 35799999999999999999999999999999
No 41
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.7e-44 Score=480.35 Aligned_cols=555 Identities=17% Similarity=0.201 Sum_probs=395.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 53 LREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQLDSAELTLHREFQQKEKTIVENAAK 132 (1334)
Q Consensus 53 ~~er~~~~~~~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~i~~~~~~ 132 (1334)
+++++.+...+.+.++..+..++.++......+... .....+ +......+.....+.+..+.......++.+...++.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e-~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 384 (1163)
T COG1196 307 LRERLEELENELEELEERLEELKEKIEALKEELEER-ETLLEE-LEQLLAELEEAKEELEEKLSALLEELEELFEALREE 384 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 444444444444444444444444444444443332 222222 333333333333344444333334566677778888
Q ss_pred HHHHHHHhHhhhhhHHHHHHHHHHhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 133 QLKQISENEFKQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKR 212 (1334)
Q Consensus 133 ~ie~~~~~~~l~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~ 212 (1334)
+.+...+.+...+++..++..++ .+..+...+......+..++..+..++..+..++++.+.++..+...++.+...+
T Consensus 385 ~~~~~~~~~~~~~~l~~l~~~i~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 462 (1163)
T COG1196 385 LAELEAELAEIRNELEELKREIE--SLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRL 462 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888999999999999 8888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH----------HHHHhccCCCCCCccccccccccccccccccc------c
Q psy11935 213 ELMAKKVESVMQSQLQQAIHMITSDVTHLHT----------SKESLATRQPSEQSLIDSTTDTNCPVTQQYVP------S 276 (1334)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~srl~~----------Vk~vL~~~~~~~~~gI~G~Vaeli~Vp~~Y~~------G 276 (1334)
.++...+..+ +..+......++....++.. |+.++...... +.||+|+|++||+|+++|++ |
T Consensus 463 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~Gv~G~v~~li~v~~~y~~Aie~alG 540 (1163)
T COG1196 463 KELERELAEL-QEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESG-LPGVYGPVAELIKVKEKYETALEAALG 540 (1163)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcc-CCCccchHHHhcCcChHHHHHHHHHcc
Confidence 8888888888 77777777777777666555 56777665554 88999999999999999999 9
Q ss_pred ccccccccCCCcChHHHHHHhhhcCCCccceechhhhh-ccCccchhccCCeEeeeccccccchhhhHHHHhhhhch--h
Q psy11935 277 SNQQYAPSSNQQYSIPTSNINQQYSMFSADSTHMNIVE-RDIPNSADDMRKYIEMQYSMFSADSTHMNIVERDIPNS--A 353 (1334)
Q Consensus 277 ~alQnIVv~~e~~Ak~aI~~LK~~~~GRaTFLPl~~Ik-r~l~~~~~~~~G~iG~A~dLV~~d~~~~~Ii~~LLG~t--~ 353 (1334)
+++|||||+|+.+|+.+|+|||++++||+||+||+.|+ ........ .+||+|+|++||+||++|.+++.++||.| |
T Consensus 541 ~~l~~vVV~~~~~a~~~i~~lk~~~~gr~tflpl~~i~~~~~~~~~~-~~g~~~~a~dli~~d~~~~~~~~~~l~~t~Iv 619 (1163)
T COG1196 541 NRLQAVVVENEEVAKKAIEFLKENKAGRATFLPLDRIKPLRSLKSDA-APGFLGLASDLIDFDPKYEPAVRFVLGDTLVV 619 (1163)
T ss_pred cccCCeeeCChHHHHHHHHHHhhcCCCccccCchhhhcccccccccc-ccchhHHHHHHhcCCHHHHHHHHHHhCCeEEe
Confidence 99999999999999999999999999999999999999 54321112 89999999999999999999999999999 9
Q ss_pred hhHHHHHHHHhhCCCCCceEecccccccCCCCcccccccCCCCCcccchhhHHHHHHHhhHHhHHHHHHHHHHHHHHHHH
Q psy11935 354 DDMRKYIEMLLEKPPGNPVSDLEAEVKDSAGPMTSFLESSVTSDIFNEPALYTKTVRSVTLKISKEKIESLERNLQTETQ 433 (1334)
Q Consensus 354 e~ld~A~~iak~~~~r~RIVTLdGdvin~GGSiTGGs~~~~~~~ll~Rk~ei~~L~~~~~~~~~~~~~~~l~~~~~~l~~ 433 (1334)
+||+.|..++....+++|||||+|+++.|||+||||+ +.+.++ +.++.++..|..++ ..+...+..+...+..++.
T Consensus 620 ~~l~~A~~l~~~~~~~~riVTl~G~~~~~~G~~tGG~-~~~~~~-~~~~~~l~~l~~~l--~~~~~~~~~~~~~~~~~~~ 695 (1163)
T COG1196 620 DDLEQARRLARKLRIKYRIVTLDGDLVEPSGSITGGS-RNKRSS-LAQKRELKELEEEL--AELEAQLEKLEEELKSLKN 695 (1163)
T ss_pred cCHHHHHHHHHhcCCCceEEecCCcEEeCCeeeecCC-ccccch-hhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999996 444455 66666889999999 9999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHH--------HHHHHHHHHHH
Q psy11935 434 RSRKLEEELQDTRQTCE----EVVRKEVSIVTVTLFLERLRSSHSKRSKNADSLVRLQKAQ--------DEIQTLLAKSA 501 (1334)
Q Consensus 434 ~~~~l~~~l~~~~~~~~----e~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~--------~~l~~l~~~~~ 501 (1334)
.+..+...+..++..+. ++..+..++..+..+.+++...+..++.++..+......+ ..+..+.....
T Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 775 (1163)
T COG1196 696 ELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALA 775 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888877666 5555666666666666666666666666655555544333 33444444444
Q ss_pred HHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhHhhH
Q psy11935 502 SIKTELREFYQTQLN-----NNVKEKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKC 576 (1334)
Q Consensus 502 ~l~~~i~~~~~~~~~-----~~l~~~l~~~~~~~a~le~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ei~~~~~~~~~ 576 (1334)
.++..++.+...... ..+..++...+..+..++.++.+......++..+ +..+..++..++.++..+ ...+
T Consensus 776 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e--i~~l~~~~~~~~~~~~~l--~~~~ 851 (1163)
T COG1196 776 KLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQE--IEELEEEIEELEEKLDEL--EEEL 851 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH--HHhH
Confidence 444444433321111 4455566666666666666666666666666666 666666666666666655 5555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 577 EVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVM 622 (1334)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~ 622 (1334)
..++.....+..+++.+..++..++..+...+.++..+..++.++.
T Consensus 852 ~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~ 897 (1163)
T COG1196 852 EELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELE 897 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555444444444433
No 42
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=100.00 E-value=1.2e-47 Score=467.10 Aligned_cols=356 Identities=19% Similarity=0.214 Sum_probs=270.5
Q ss_pred eecccCCCCCc-eEEEeeCCEEEEecCCCCCCCCccccccccccccccc-cccccCCceEecCCCCeeecCHHHHHHHHH
Q psy11935 907 SVDVLDAVGSN-IIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGL-KRQRLLTPFVRNCDGQLVATEWEDALIAVA 984 (1334)
Q Consensus 907 s~c~~C~~gC~-i~v~v~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l-~~~Rl~~PliR~~~g~~~~iSWdeAl~~ia 984 (1334)
++|++|+.||+ +.+++++|+++++. ++|+||||+++++ +|+||++||+|. +|+|+++|||||++.++
T Consensus 2 ~~C~~C~~gC~~l~v~v~~g~v~~v~----------~~C~kg~~~~~~~~~~~Rl~~Pl~R~-~g~~~~isWdeAl~~ia 70 (421)
T TIGR03129 2 VVCPFCGCLCDDIEVEVEGNKIVKVE----------NACRIGAAKFKEAEESHRITRPMIRK-NGDGKEVSYEEAIEKAA 70 (421)
T ss_pred cccCCcccccCeEEEEEECCEEEEEe----------cCCcccHHHHhhccCCcccCCCeEcC-CCCeeeCChHHHHHHHH
Confidence 68999999998 99999999999996 5999999999998 599999999997 48999999999999999
Q ss_pred HHhcc-CCEEEEeCCcCCHHHHHHHHHHHHHhCCCccccCCCCCcchhhhhhhhhccCCCCccccc-ccCeEEEEcCCcc
Q psy11935 985 QKLQT-SEVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAE-EADLILLIGTNPR 1062 (1334)
Q Consensus 985 ~~L~~-~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~die-~ad~Il~~G~np~ 1062 (1334)
++|++ ....+++++..+.+..+++++|++.+|+ ++++..++|..+...++.....+..++.|++ +||+||+||+||.
T Consensus 71 ~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~di~~~ad~il~~G~n~~ 149 (421)
T TIGR03129 71 EILKNAKRPLIYGWSSTSCEAQRAGLELAEKLGA-VIDNTASVCHGPSLLALQEVGWPSCTLGEVKNRADVIIYWGTNPM 149 (421)
T ss_pred HHHHhhcCCeEEEcccCCHHHHHHHHHHHHHHCC-CccccchhccccHHHHHHhcCCccccHHHHhhcCCEEEEEccCcc
Confidence 99998 4445567777788989999999999998 4565556666543333332223345678997 6999999999999
Q ss_pred ccchhHHHHH--------HHHHhhCCCeEEEEccCCCCcccccc------CCCcHHHHHHHHh-----------------
Q psy11935 1063 FEAPLFNARI--------RKGYLTNELDVAYIGPKVDLRYDYEH------LGESADLIKQLAS----------------- 1111 (1334)
Q Consensus 1063 ~~~p~~~~ri--------r~a~~~~g~kiivIdp~~~~t~~~a~------~Gtd~a~l~~l~~----------------- 1111 (1334)
.++|.++.|+ +.+. ++|++|++|||+.+.|+..++ ||+|.+++.++..
T Consensus 150 ~~~p~~~~r~~~~~~~~~~~~~-~~g~~lividp~~s~t~~~ad~~l~i~pgtd~~l~~~l~~~l~~~~~~~~~~~gv~~ 228 (421)
T TIGR03129 150 HAHPRHMSRYSVFPRGFFTQRG-REDRTVIVVDPRKTDTAKLADYHLQIKPGSDYELISALRAVLRGKEPQPEEVAGIPK 228 (421)
T ss_pred ccCchHHhhhhhhhhhhhhhcc-cCCCEEEEECCCCCCcchhhcceeccCCCCcHHHHHHHHHHHccCCcchhhhcCCCH
Confidence 9999877665 2222 578999999999999987654 9999999877642
Q ss_pred -cHHHHHHHHhcCCCcEEEEcCCc---ccHH----HHHHHHHHHHH-----------hhcCCCCC-CCCCcccccchhhh
Q psy11935 1112 -GSHPFSKKLSAAKKPLIVVGADI---SDGA----AVLALVQQLAA-----------KVTCESDV-PCDWKVLNILQKAA 1171 (1334)
Q Consensus 1112 -g~~~~A~~l~~a~~~~ii~G~~~---~~g~----~~~~al~~l~~-----------~~g~~Gg~-~~~~~~~~~l~~~~ 1171 (1334)
.+.++|+.|+++++++|++|.|. .++. .+.+++..|.. +.|.+|+. .+.|....+. ..
T Consensus 229 ~~i~~la~~l~~a~~~~i~~g~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~g~~~~~G~~~~~~~~~g~~~--~~ 306 (421)
T TIGR03129 229 EKILELAEILKNAKFGVIFFGLGLTSSLGKHRNVEIAIELVKDLNKYTKFTIIPMRGHYNVAGFNQVLTWETGYPF--GV 306 (421)
T ss_pred HHHHHHHHHHHhCCceEEEEecccccccCcchHHHHHHHHHHHhCcccceeeeeCcCcCCccccccccccccCCCc--cc
Confidence 26789999999999999999887 2222 33333333221 12222211 0011000000 00
Q ss_pred hhhhhhhcCCCc-c---hhhHhcCCCcEEEEECCChhhh----HHhhcCCCceEEEEcCCCChhhccccEEecCCC-CCC
Q psy11935 1172 SQVAALDIGYKP-G---TSAIREKPPKVLFLLGADEGSI----SRDDVGKDCFIIYQGHHGDHGASIADAILPGAA-YTE 1242 (1334)
Q Consensus 1172 n~~G~~~~g~~p-g---~~~i~~g~ik~l~~~g~np~~~----~~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~-~~E 1242 (1334)
...... ....| + .+.+..|+++++|++|+||+.. ..++|.+++ +|++|+|+|+|+.+||||||+++ |+|
T Consensus 307 ~~~~~~-~~~~~~~~~~~~~l~~g~i~~l~~~g~Np~~~~p~~~~~al~~~~-~Vv~d~~~teTa~~ADvvLP~~~~~~E 384 (421)
T TIGR03129 307 DFSRGY-PRYNPGETTTVDLLKRKEVDAALIIGSDPGAHFPQDAVKHLAEIP-VIVIDPHPTPTTEIADVVIPVAIDGIE 384 (421)
T ss_pred cHhhcC-CCCCCCcchHHHHHhcCCCCEEEEeCCChhhhCcHHHHHhhccCC-EEEECCCCCCccccCCEEecCCcccee
Confidence 000000 00112 1 3456789999999999999642 467888887 59999999999999999999997 899
Q ss_pred CCcccccCCCceEEeccccCCCCCcccHHHHHHHHHHHh
Q psy11935 1243 KQSTYVNTEGRAQQTLTAVTPPGLAREDWKIIRALSEGV 1281 (1334)
Q Consensus 1243 k~Gt~~n~egrvq~~~~av~P~gear~dw~Il~~La~~l 1281 (1334)
++|+|+|.+|+++.++|+|+|+| |+||+||+.||++|
T Consensus 385 ~~g~~~~~~~~~~~~~~~v~p~~--~~~~~i~~~La~~~ 421 (421)
T TIGR03129 385 AGGTAYRMDNVPIRLRKVIESPE--PSDEEILKKILERV 421 (421)
T ss_pred cCccEEecCCeEEEeeccCCCCC--CCHHHHHHHHHhhC
Confidence 99999999999999999999998 99999999999975
No 43
>COG0243 BisC Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion]
Probab=100.00 E-value=9.9e-48 Score=497.41 Aligned_cols=371 Identities=25% Similarity=0.336 Sum_probs=302.4
Q ss_pred eeeecccCCCCCceEEEeeCCEEEE--ecCCCCCCCCccccccccccccccc-cccccCCceEec----CCCCeeecCHH
Q psy11935 905 TESVDVLDAVGSNIIVSTRTGEVLR--VLPRLNEDINEEWLADKGRFAYDGL-KRQRLLTPFVRN----CDGQLVATEWE 977 (1334)
Q Consensus 905 ~~s~c~~C~~gC~i~v~v~~g~v~r--i~p~~~~~vn~g~lC~kgr~~~~~l-~~~Rl~~PliR~----~~g~~~~iSWd 977 (1334)
+.++|++|+.||++.+.+++|++++ +.+++.+++|.|.+|.||++....+ +|+||++||+|. |+|+|++||||
T Consensus 41 ~~~~C~~C~~~C~i~~~v~~g~~~~~~~~~~~~~p~~~g~~C~kg~~~~~~~~~~~RL~~Pl~r~~g~rg~g~f~~ISWd 120 (765)
T COG0243 41 VKTICPGCGVGCGIRVHVKDGKVVRITIEGDPDHPINRGRLCAKGARGRERVYSPDRLKYPLLRRVGKRGEGKFVRISWD 120 (765)
T ss_pred cccccccCCCCCceEEEEECCEEEeecccCCcccccccccccccCcceeeeeeCchhhcCccccCCCCCCCCceEEecHH
Confidence 8899999999999999999999999 9999999999999999999988888 699999997665 37899999999
Q ss_pred HHHHHHHHH-hccCCEEEEeCCcCC--HHHHHHHHHHHHH-hCCCccccCCCCCcchhhhhhhhhcc---CCCCcccccc
Q psy11935 978 DALIAVAQK-LQTSEVAGVVGSLAD--AEAMVALKDLLNK-LGSEDLYTEYAFPLEGAGTDLRANYL---LNNKIAGAEE 1050 (1334)
Q Consensus 978 eAl~~ia~~-L~~~~i~~~~g~~~~--~e~~~~~~~l~~~-lGs~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~die~ 1050 (1334)
||++.|+++ +. +.+..+++...+ ++..+..+.|++. +|++|+++.+++|+.+...++..++| ...++.|+++
T Consensus 121 eA~~~ia~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~C~~~~~~~~~~~~G~~~~~~~~~D~~~ 199 (765)
T COG0243 121 EALDLIAAKLLP-RIIGFYGSGALTTGNEAGYLAGKLARAFLGGNNIDHCGRYCHAAAAAGLPYTFGSGAATGSYPDIEN 199 (765)
T ss_pred HHHHHHHHHhcc-hhhhccCchhhccCccchHHHhHHHHhcccCCCcCCCccccccchhhhhcccccCCCCCccHhhHhc
Confidence 999999999 56 555556666555 8888999999995 99999999999999887777777776 3678899999
Q ss_pred cCeEEEEcCCccccchhHHHH--HHHHHhhCCCeEEEEccCCCCcccccc------CCCcHHHHHHHH------------
Q psy11935 1051 ADLILLIGTNPRFEAPLFNAR--IRKGYLTNELDVAYIGPKVDLRYDYEH------LGESADLIKQLA------------ 1110 (1334)
Q Consensus 1051 ad~Il~~G~np~~~~p~~~~r--ir~a~~~~g~kiivIdp~~~~t~~~a~------~Gtd~a~l~~l~------------ 1110 (1334)
||+||+||+||.+++|++..+ ..+..+..|+|||||||+++.|+..++ ||||.+|+.+|+
T Consensus 200 a~~iv~~G~N~~~~~~~~~~~~~~~~~~~~~~~kviviDP~~t~Ta~~ad~~l~irPGTD~Al~~gi~~~li~~~~~D~~ 279 (765)
T COG0243 200 ADLIVLWGSNPAEAHPVLGRGLLLAKAAKRSGAKVIVIDPRRTETAALADLWLPIRPGTDAALALGIAHVLIEENLYDEE 279 (765)
T ss_pred CCEEEEECCChHHhCcchhhHHHHHHHhccCCCEEEEECCCCChhHHhhCCccccCCCcHHHHHHHHHHHHHHcCcccHH
Confidence 999999999999999988863 333334678899999999999998875 999999987653
Q ss_pred -----h----------------------------c----HHHHHHHHhcCCCcEEEEcCCc---ccHHHHHHHHH---HH
Q psy11935 1111 -----S----------------------------G----SHPFSKKLSAAKKPLIVVGADI---SDGAAVLALVQ---QL 1147 (1334)
Q Consensus 1111 -----~----------------------------g----~~~~A~~l~~a~~~~ii~G~~~---~~g~~~~~al~---~l 1147 (1334)
. | |.++|+.|+.++++++++|+|. .+|.+.++++. .|
T Consensus 280 Fl~~~t~~g~~~~~~~~~~~~~~~~t~e~~~~itGv~~~I~~~A~~~a~~~~~~~~~g~G~~qh~~G~~~~~ai~~L~ll 359 (765)
T COG0243 280 FLAKYTNVGFDEFAYLLGLEDAEAKTPEWAEAITGVAEEIRQLARLFAAAKPVTILWGMGIQQHANGEQTVRAIANLALL 359 (765)
T ss_pred HHHHHhhcccchhhhhccccccccCCHHHHHHhhhHHHHHHHHHHHHhcCCceEEeeccchhHHHHhHHHHHHHHHHHHH
Confidence 1 2 4568899999998999999999 67777666655 45
Q ss_pred HHhhcCCCCCCCCCcccccchhhhhhhh-hh---------------------------hcCCCcch----hhHhcC--CC
Q psy11935 1148 AAKVTCESDVPCDWKVLNILQKAASQVA-AL---------------------------DIGYKPGT----SAIREK--PP 1193 (1334)
Q Consensus 1148 ~~~~g~~Gg~~~~~~~~~~l~~~~n~~G-~~---------------------------~~g~~pg~----~~i~~g--~i 1193 (1334)
.|++|.+||+ +++++++.|..| .. ++...||. .++..+ ++
T Consensus 360 ~Gnig~pGgg------~~~~~g~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i 433 (765)
T COG0243 360 TGNIGKPGGG------VFPLRGHSNAQGGARDVGGLVKPLPGLPVVRAKTAIPWGRPTDAAAKPGLSTADRALLEGPYPI 433 (765)
T ss_pred hCCCCCCCCC------CCcccCcccccccccccccCCCCCccccccchhhhhhhhCcchhhhCCcceeecccccccCCCe
Confidence 5677777754 111221111111 10 11112221 233344 89
Q ss_pred cEEEEECCChhhh------HHhhcCCCc-eEEEEcCCCChhhccccEEecCCCCCCCCcccccCCC-ceEEeccccCCCC
Q psy11935 1194 KVLFLLGADEGSI------SRDDVGKDC-FIIYQGHHGDHGASIADAILPGAAYTEKQSTYVNTEG-RAQQTLTAVTPPG 1265 (1334)
Q Consensus 1194 k~l~~~g~np~~~------~~~al~k~~-fvV~~d~~~~eta~~ADvVLP~a~~~Ek~Gt~~n~eg-rvq~~~~av~P~g 1265 (1334)
|++|++|+||+.. ...++.+.+ |+|++|+|+|+|+.+||||||+++|+|++|.++|.+. +++..+++|+|+|
T Consensus 434 k~l~~~~~Np~~~~p~~~~~~~~~~~~~~~vVv~D~~~t~Ta~~ADivLPa~~~~E~~~~~~~~~~~~v~~~~~~v~P~g 513 (765)
T COG0243 434 KALFVYGGNPVVSAPDDRNVKKALLRDDEFVVVIDIFMTETAKYADIVLPATTFLEKDDIYTNAGRSYVQLRRKVVEPPG 513 (765)
T ss_pred EEEEEeCCCchhcCchhhHHHHHHhcCCCeEEEEccCCCHHHHhhhhhCCccccccccCccccCCcceEEEeeeccCCCc
Confidence 9999999999652 134455555 9999999999999999999999999999999999999 9999999999999
Q ss_pred CcccHHHHHHHHHHHhc
Q psy11935 1266 LAREDWKIIRALSEGVS 1282 (1334)
Q Consensus 1266 ear~dw~Il~~La~~lg 1282 (1334)
++|+||||+.+|+++++
T Consensus 514 ea~~d~~ii~~la~~~~ 530 (765)
T COG0243 514 EARPDYWIIIELAKRLL 530 (765)
T ss_pred cccccHHHHHHHHHHhc
Confidence 99999999999999976
No 44
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=1.4e-46 Score=456.53 Aligned_cols=350 Identities=19% Similarity=0.192 Sum_probs=262.1
Q ss_pred eecccCCCCCc-eEEEeeCCEEEEecCCCCCCCCccccccccccccccccccccCCceEecCCCCeeecCHHHHHHHHHH
Q psy11935 907 SVDVLDAVGSN-IIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGLKRQRLLTPFVRNCDGQLVATEWEDALIAVAQ 985 (1334)
Q Consensus 907 s~c~~C~~gC~-i~v~v~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l~~~Rl~~PliR~~~g~~~~iSWdeAl~~ia~ 985 (1334)
.+|++|++||+ +.++++||+|+++. .+|+||+|++++++ +||++||+|. +++|||||++.+++
T Consensus 2 ~~C~~C~~gC~~l~~~~~~g~v~~~~----------~lC~kg~~~~~~~~-dRl~~Pl~r~-----~~isWdeAl~~ia~ 65 (415)
T cd02761 2 VVCPFCGLLCDDIEVEVEDNKITKVR----------NACRIGAAKFARYE-RRITTPRIDG-----KPVSLEEAIEKAAE 65 (415)
T ss_pred cccCCCCccccceEEEEECCEEEEcC----------CCCcchHHHHhhcc-cccCCCeecC-----CCCCcHHHHHHHHH
Confidence 57999999996 99999999999963 49999999999999 9999999984 79999999999999
Q ss_pred Hhcc-CCEEEEeCCcCCHHHHHHHHHHHHHhCCCccccCCCCCcchhhhhhhhhccCCCCccccc-ccCeEEEEcCCccc
Q psy11935 986 KLQT-SEVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAE-EADLILLIGTNPRF 1063 (1334)
Q Consensus 986 ~L~~-~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~die-~ad~Il~~G~np~~ 1063 (1334)
+|++ ....+++++....+..+.+++|++.+|+ ++++..++|..+...++.....++.++.|+. +||+||+||+||..
T Consensus 66 ~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~di~~~ad~il~~G~n~~~ 144 (415)
T cd02761 66 ILKEAKRPLFYGLGTTVCEAQRAGIELAEKLGA-IIDHAASVCHGPNLLALQDSGWPTTTLGEVKNRADVIVYWGTNPMH 144 (415)
T ss_pred HHHhhcCCEEEEcccchHHHHHHHHHHHHHHCC-CccccccccccchHHHHHhCCCccccHHHHHhcCCEEEEEcCCccc
Confidence 9998 3444455555556778889999999997 5666666776543333333233456788996 89999999999999
Q ss_pred cchhHHHHH---HHHH----hhCCCeEEEEccCCCCcccccc------CCCcHHHHHHHHh------------------c
Q psy11935 1064 EAPLFNARI---RKGY----LTNELDVAYIGPKVDLRYDYEH------LGESADLIKQLAS------------------G 1112 (1334)
Q Consensus 1064 ~~p~~~~ri---r~a~----~~~g~kiivIdp~~~~t~~~a~------~Gtd~a~l~~l~~------------------g 1112 (1334)
++|+++.++ .+++ .++|+||++|||+.+.|+..++ ||+|.+++.+++. .
T Consensus 145 ~~p~~~~~~~~~~~~~~~~~~~~g~kli~idp~~t~ta~~Ad~~l~i~pgtd~~l~~~l~~~l~~~~~~~~~~~gv~~~~ 224 (415)
T cd02761 145 AHPRHMSRYSVFPRGFFREGGREDRTLIVVDPRKSDTAKLADIHLQIDPGSDYELLAALRALLRGAGLVPDEVAGIPAET 224 (415)
T ss_pred cccHHhhhhhhhhhhhccccCCCCCEEEEEcCCCcchhhhcceEEecCCCCcHHHHHHHHHHHhccccccccccCcCHHH
Confidence 999877332 1111 1478999999999999987654 9999999877652 2
Q ss_pred HHHHHHHHhcCCCcEEEEcCCc---ccHHHHHHHHHHHHHhhcCCCCCCCCCcccccchhhhhhhhh-----hhcC----
Q psy11935 1113 SHPFSKKLSAAKKPLIVVGADI---SDGAAVLALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAA-----LDIG---- 1180 (1334)
Q Consensus 1113 ~~~~A~~l~~a~~~~ii~G~~~---~~g~~~~~al~~l~~~~g~~Gg~~~~~~~~~~l~~~~n~~G~-----~~~g---- 1180 (1334)
++++|+.|+++++++|++|.|+ .++......+..+...++..++. ++.++++..|..|+ +..|
T Consensus 225 i~~lA~~l~~a~~~~i~~g~g~~~~~~~~~~~~~~~~li~~l~~~~~~-----~~~~l~g~~n~~G~~~~~~~~~g~~~~ 299 (415)
T cd02761 225 ILELAERLKNAKFGVIFWGLGLLPSRGAHRNIEAAIRLVKALNEYTKF-----ALLPLRGHYNVRGFNQVLTWLTGYPFR 299 (415)
T ss_pred HHHHHHHHHhCCceEEEEeccccccCCccHHHHHHHHHHHHhCcccce-----eeeeccCcCCccCcccccccccCCCcc
Confidence 6789999999999999999887 22333333333333333221100 00011111111110 0000
Q ss_pred ---------CCcc----hhhHhcCCCcEEEEECCChhh----hHHhhcCCCceEEEEcCCCChhhccccEEecCCC-CCC
Q psy11935 1181 ---------YKPG----TSAIREKPPKVLFLLGADEGS----ISRDDVGKDCFIIYQGHHGDHGASIADAILPGAA-YTE 1242 (1334)
Q Consensus 1181 ---------~~pg----~~~i~~g~ik~l~~~g~np~~----~~~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~-~~E 1242 (1334)
..|+ .+.+..|++|++|++|+||+. ...++|.+++ +|++|+|+|+|+.+||||||+++ |+|
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~i~~g~ik~l~~~g~np~~~~p~~~~~al~~~~-~Vv~d~~~teta~~ADvvLP~a~~~~E 378 (415)
T cd02761 300 VDFSRGYPRYNPGEFTAVDLLAEGEADALLIIASDPPAHFPQSAVKHLAEIP-VIVIDPPPTPTTRVADVVIPVAIPGIE 378 (415)
T ss_pred eecccCCCCCCCchhhHHHHHhcCCCCEEEEEcCCCcccCCHHHHHhhccCC-EEEECCCCCcccccCcEEEeCCccccc
Confidence 1122 345668999999999999954 2467788876 79999999999999999999997 799
Q ss_pred CCcccccCCCceEEeccccCCCCCcccHHHHHHHHHHHh
Q psy11935 1243 KQSTYVNTEGRAQQTLTAVTPPGLAREDWKIIRALSEGV 1281 (1334)
Q Consensus 1243 k~Gt~~n~egrvq~~~~av~P~gear~dw~Il~~La~~l 1281 (1334)
++|||+|.||++|.++|+++| +.++||+||..|++++
T Consensus 379 ~~Gt~~n~eg~~q~~~~~~~~--~~~~~~~il~~l~~~~ 415 (415)
T cd02761 379 AGGTAYRMDGVVVLPLKAVET--ERLPDEEILKQLLEKV 415 (415)
T ss_pred cCceEEEeCCceEeeeccCCC--CCCCHHHHHHHHHhhC
Confidence 999999999999999999987 4599999999999864
No 45
>TIGR02693 arsenite_ox_L arsenite oxidase, large subunit. This model represents the large subunit of an arsenite oxidase complex. The small subunit is a Rieske protein. Homologs to both large and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7. This enzyme acts in energy metabolim by arsenite oxidation, rather than detoxification by reduction of arsenate to arsenite prior to export.
Probab=100.00 E-value=2e-46 Score=480.31 Aligned_cols=351 Identities=20% Similarity=0.213 Sum_probs=261.9
Q ss_pred eCCEEEE--ecCCCCCCCCccccccccccccccc-cc-----cccCCceEecCCCCeeecCHHHHHHHHHHHhcc-----
Q psy11935 923 RTGEVLR--VLPRLNEDINEEWLADKGRFAYDGL-KR-----QRLLTPFVRNCDGQLVATEWEDALIAVAQKLQT----- 989 (1334)
Q Consensus 923 ~~g~v~r--i~p~~~~~vn~g~lC~kgr~~~~~l-~~-----~Rl~~PliR~~~g~~~~iSWdeAl~~ia~~L~~----- 989 (1334)
+||++++ |.|++++|+|.|++|.||++..+.+ +| +||++||+|.+ |+|++|||||||+.||++|++
T Consensus 72 ~~G~~~~~~i~~d~~~pvn~G~~C~rG~~~~~~~y~~~~~~~~RL~~Pl~R~~-g~~~~iSWdeAld~iA~~l~~i~~~~ 150 (806)
T TIGR02693 72 RDGRQYNVVIVPDKECVVNRGLYSIRGGTMALTVWSLDRGTQDRLTYPLLRVG-DQFQATSWDDALTLMALLTKKIRDRD 150 (806)
T ss_pred cCCcEEEEEEeCCCCCCCCCCccccchhhHHHhhhcccCCCCccccCCeEecC-CcEEEccHHHHHHHHHHHHHHHHhhc
Confidence 6899988 9999999999999999999887776 45 89999999986 899999999999999999987
Q ss_pred --CCEEEE----eCCcCCHHHHHHHHHHH-HHhCCCccccCCCCCcchhhhhhhh-hc-cCCCCcccccccCeEEEEcCC
Q psy11935 990 --SEVAGV----VGSLADAEAMVALKDLL-NKLGSEDLYTEYAFPLEGAGTDLRA-NY-LLNNKIAGAEEADLILLIGTN 1060 (1334)
Q Consensus 990 --~~i~~~----~g~~~~~e~~~~~~~l~-~~lGs~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~die~ad~Il~~G~n 1060 (1334)
++++++ +|+....|..|.+.+|+ ..+|++|++++...|+.+...+.+. .+ .++.++.|+++||+||+||+|
T Consensus 151 G~~sv~~~~~~~~g~~~~~e~~~~~~k~~~~~lgt~n~~~~~r~~~~s~~~~~~~~G~g~~~~~~~D~~~Ad~iv~~G~N 230 (806)
T TIGR02693 151 GNDDIAVKCFDHGGAGGGFENTWGAGKLFFAALSVKHIRIHNRPAYNSEVHGTREMGVGELNNTYEDARLADTIVLWGAN 230 (806)
T ss_pred CCccEEEEecccCCCCCchHHHHHHHHHHHHHcCCCcccccccccccccchhhhhhcCCCCCCCHHHHHhCCEEEEECCC
Confidence 678775 34556678777777665 5899999887655554322111111 11 235578999999999999999
Q ss_pred ccccchhHH--HH---HH---HHHhh--------CCCeEEEEccCCCCccccc-------------cCCCcHHHHHHHH-
Q psy11935 1061 PRFEAPLFN--AR---IR---KGYLT--------NELDVAYIGPKVDLRYDYE-------------HLGESADLIKQLA- 1110 (1334)
Q Consensus 1061 p~~~~p~~~--~r---ir---~a~~~--------~g~kiivIdp~~~~t~~~a-------------~~Gtd~a~l~~l~- 1110 (1334)
|.+++|+++ +. ++ ++.++ +|+||||||||.+.|+..+ .||||.+|+.+|+
T Consensus 231 p~et~~~~~~~~~~~~~~~~~~ak~~~~~~g~~~~~~kiIvIDPr~t~ta~~ad~~a~d~~~~l~i~PGTD~aL~~a~~~ 310 (806)
T TIGR02693 231 SYETQTNYFLNHWLPNLQGATVAKKKQAFPGEPAEPGYLIVVDPRRTSSYTVAEQTAPDRVLHLRINLGTDYALFNALAT 310 (806)
T ss_pred hHHhhhhhhHhhhhhhhhHHHHhhhhhcccccccCCceEEEEcCCCCchhhhhcccccccceEeccCCCcHHHHHHHHHH
Confidence 999998643 22 11 22221 2579999999999987543 2999999877653
Q ss_pred --------------------------------------------hcHHHHHHHHhcCC------CcEEEEcCCc---ccH
Q psy11935 1111 --------------------------------------------SGSHPFSKKLSAAK------KPLIVVGADI---SDG 1137 (1334)
Q Consensus 1111 --------------------------------------------~g~~~~A~~l~~a~------~~~ii~G~~~---~~g 1137 (1334)
+.|+++|+.|++++ +++|++|.|+ .++
T Consensus 311 ~Ii~~g~~D~~Fi~~~~~t~gfd~~~~~~~~t~e~aa~itGV~~~~I~~~A~~~a~~k~~~~~~~~~~~~~~G~~~~~~~ 390 (806)
T TIGR02693 311 YVWEKGWYDMAFIQARTHMTLFEDAVKSLKMSMAQAERITGVSRAEIEKAAEWIAKPKAGGKKRRTMTIYEKGIIWGNDN 390 (806)
T ss_pred HHHHCCCcCHHHHhcccCCCCHHHHHHHccCCHHHHHHHHCcCHHHHHHHHHHHHhcccccCccceEEEecchheecccc
Confidence 11467899998876 5688888877 345
Q ss_pred HHHHHH---HHHHHHhhcCCCCCCCCCcccccchhhhhhhhhhhcC-CC---cc--h-hhHhcCCCcEEEEECCChhhh-
Q psy11935 1138 AAVLAL---VQQLAAKVTCESDVPCDWKVLNILQKAASQVAALDIG-YK---PG--T-SAIREKPPKVLFLLGADEGSI- 1206 (1334)
Q Consensus 1138 ~~~~~a---l~~l~~~~g~~Gg~~~~~~~~~~l~~~~n~~G~~~~g-~~---pg--~-~~i~~g~ik~l~~~g~np~~~- 1206 (1334)
....++ |..|+|++|++||+.....+. ..|..... .. ++ + ..+..|++|++|++|.||+..
T Consensus 391 ~~~~~ai~~L~~ltGniG~pGgG~~~~~~~--------~~g~~~~~~~~~~~~~~~~~~~i~~g~~k~l~v~g~Np~~s~ 462 (806)
T TIGR02693 391 YDQVAALVQLAVATHNIGRPGTGCVRQGGH--------QEGYVRPPAIHRGGPPVYVDQFLIEGKGKFYWVWGCDPYLTT 462 (806)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcccccCCc--------cCCCcCCcccCCCCCHHHHHHHHhCCCceEEEEEecChhccC
Confidence 444444 555567777777542211110 00110000 01 11 1 235678999999999999532
Q ss_pred -----HH-----------hhcCCC--------------------ceEEEEcCCCChhhccccEEecCCCCCCCCcccccC
Q psy11935 1207 -----SR-----------DDVGKD--------------------CFIIYQGHHGDHGASIADAILPGAAYTEKQSTYVNT 1250 (1334)
Q Consensus 1207 -----~~-----------~al~k~--------------------~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~Gt~~n~ 1250 (1334)
.+ ++|.++ +|+|++|+|+|+|+.+||||||+++|+|++|+++|.
T Consensus 463 pn~~~~~~~~~~~~~~v~~al~~~~~~~~~~~~~~~~~a~~~~~~f~V~~D~~~t~ta~~ADvvLPaa~~~E~~~~~~n~ 542 (806)
T TIGR02693 463 PNAQVFRKVIHERTEKVKDAMSAAGEGTIQEMVQKILDALYQGGLFLVVQDIYPTKTAEAAHLILPAAGWGEMNLTSMNG 542 (806)
T ss_pred cChHHHHHHHhhhhHHHHHHHHhcccccchhhhhhhhhhhccCCCEEEEEcCCCCccHhhCcEEEcCCcceeecCcEEcC
Confidence 11 233332 599999999999999999999999999999999999
Q ss_pred CCceEEeccccCCCCCcccHHHHHHHHHHHhc
Q psy11935 1251 EGRAQQTLTAVTPPGLAREDWKIIRALSEGVS 1282 (1334)
Q Consensus 1251 egrvq~~~~av~P~gear~dw~Il~~La~~lg 1282 (1334)
+++++..+|+|+|+|++|+||+|+.+||++||
T Consensus 543 ~~~i~~~~~~v~p~gear~d~~I~~~La~rlg 574 (806)
T TIGR02693 543 ERRMRLYEKFMDPPGEAKPDCLIAAWVANTIA 574 (806)
T ss_pred ccceEEeccccCCCccCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999997
No 46
>cd02769 MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=3.6e-46 Score=469.49 Aligned_cols=363 Identities=18% Similarity=0.174 Sum_probs=261.5
Q ss_pred CCCCCceEEEeeCCEEEEecCCCCCCCCccccccccccccccc-cccccCCceEecC--------------CCCeeecCH
Q psy11935 912 DAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGL-KRQRLLTPFVRNC--------------DGQLVATEW 976 (1334)
Q Consensus 912 C~~gC~i~v~v~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l-~~~Rl~~PliR~~--------------~g~~~~iSW 976 (1334)
|..+|++.|+|+||+|++|+|++++|.+ |.||++..+.+ +|+||++||+|++ +|+|++|||
T Consensus 3 ~~~~~~~~v~v~dG~iv~v~g~~~~p~~----~~kg~~~~~~~y~pdRl~~PlkR~g~~~~~~~~~~g~rG~g~~~~ISW 78 (609)
T cd02769 3 ASHWGAFRARVKDGRIVGVRPFEEDPDP----SPLLDGVPDAVYSPTRIKYPMVRRGWLEKGPGSDRSLRGKEEFVRVSW 78 (609)
T ss_pred CcCcCceEEEEECCEEEEeecCCCCCCc----chhhhcchhhccChhhccCCceechhhhcCCCCCcccCCCCCeEEecH
Confidence 5556889999999999999999998876 78999999988 6999999999963 589999999
Q ss_pred HHHHHHHHHHhcc-------CCEEEEeCC-----cCCHHHHHHHHHHHHHhCCCccccCCCCCcchhhhhhhhhc-----
Q psy11935 977 EDALIAVAQKLQT-------SEVAGVVGS-----LADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANY----- 1039 (1334)
Q Consensus 977 deAl~~ia~~L~~-------~~i~~~~g~-----~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~----- 1039 (1334)
||||++||++|++ ++|+++.++ .... ..+.+.+|++.+|+.+ .+...+|..+........+
T Consensus 79 dEAld~IA~kl~~i~~~~G~~si~~~~~~~~~~g~~~~-~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~~~~~G~~~~ 156 (609)
T cd02769 79 DEALDLVAAELKRVRKTYGNEAIFGGSYGWSSAGRFHH-AQSLLHRFLNLAGGYV-GSVGDYSTGAAQVILPHVVGSMEV 156 (609)
T ss_pred HHHHHHHHHHHHHHHHhhCcHhhcccCcccccCccccc-chHHHHHHHhccCCcc-CCCCCccHHHHHhhhhheeCChhh
Confidence 9999999999998 455432211 1111 2355789999898643 3333455532211111111
Q ss_pred --cCCCCccc-ccccCeEEEEcCCccccchhH---------HHHHHHHHhhCCCeEEEEccCCCCccccc-------cCC
Q psy11935 1040 --LLNNKIAG-AEEADLILLIGTNPRFEAPLF---------NARIRKGYLTNELDVAYIGPKVDLRYDYE-------HLG 1100 (1334)
Q Consensus 1040 --~~~~~~~d-ie~ad~Il~~G~np~~~~p~~---------~~rir~a~~~~g~kiivIdp~~~~t~~~a-------~~G 1100 (1334)
+.+.++.| +++||+||+||+||.+++|+. ..+++++ +++|+||||||||++.|+..+ .||
T Consensus 157 ~~~~~~~~~d~~~~a~~il~wG~Np~~t~~~~~~~~~~~~~~~~~~~a-r~~GaklIvIDPr~t~tA~~add~~l~irPG 235 (609)
T cd02769 157 YTEQQTSWPVIAEHTELVVAFGADPLKNAQIAWGGIPDHQAYSYLKAL-KDRGIRFISISPLRDDTAAELGAEWIAIRPG 235 (609)
T ss_pred ccccCCChHHHHhhCCeEEEECCChHHhCcccccccCCcchHHHHHHH-HhCCCEEEEEcCCCCcchhhhcCcEeccCCC
Confidence 22334444 799999999999999998642 3556665 468999999999999998754 299
Q ss_pred CcHHHHHHHH------------------hc--------------------------------HHHHHHHHhcCCCcEEEE
Q psy11935 1101 ESADLIKQLA------------------SG--------------------------------SHPFSKKLSAAKKPLIVV 1130 (1334)
Q Consensus 1101 td~a~l~~l~------------------~g--------------------------------~~~~A~~l~~a~~~~ii~ 1130 (1334)
||++|+.+|+ .| |+++|+.|+. ++++|++
T Consensus 236 TD~ALalam~~~ii~e~~~D~~Fv~~~t~Gfe~~~~~l~~~~dg~~~tpe~aa~itGV~ae~I~~lA~~~a~-~~~~i~~ 314 (609)
T cd02769 236 TDVALMLALAHTLVTEGLHDKAFLARYTVGFDKFLPYLLGESDGVPKTPEWAAAICGIPAETIRELARRFAS-KRTMIMA 314 (609)
T ss_pred cHHHHHHHHHHHHHHcCCccHHHHHHHccCHHHHHHHhcCCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHhh-cCcEEEe
Confidence 9999877653 11 4678899987 5688888
Q ss_pred cCCc---ccHHHHHH---HHHHHHHhhcCCCCCCC-CCcccccchh--hhhhhhhhhcCC------Ccc---hhhHh---
Q psy11935 1131 GADI---SDGAAVLA---LVQQLAAKVTCESDVPC-DWKVLNILQK--AASQVAALDIGY------KPG---TSAIR--- 1189 (1334)
Q Consensus 1131 G~~~---~~g~~~~~---al~~l~~~~g~~Gg~~~-~~~~~~~l~~--~~n~~G~~~~g~------~pg---~~~i~--- 1189 (1334)
|+|. .+|.+..+ +|..|+|++|++||+.. .+...+.... .....-....+. .|. .+++.
T Consensus 315 g~g~~~~~~g~~~~rai~~L~aLtGnig~pGgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~g 394 (609)
T cd02769 315 GWSLQRAHHGEQPHWMAVTLAAMLGQIGLPGGGFGFGYHYSNGGGPPRGAAPPPALPQGRNPVSSFIPVARIADMLLNPG 394 (609)
T ss_pred cccchhhhcccHHHHHHHHHHHHhCCCCCCCCccccCcCcCCCCCCCCCCCCCCcccccCCCcceeecHHHHHHHHhCCC
Confidence 9887 45555544 45666777777875421 1000000000 000000000000 000 11221
Q ss_pred -----------cCCCcEEEEECCChhh------hHHhhcCCCceEEEEcCCCChhhccccEEecCCCCCCCCc-ccccCC
Q psy11935 1190 -----------EKPPKVLFLLGADEGS------ISRDDVGKDCFIIYQGHHGDHGASIADAILPGAAYTEKQS-TYVNTE 1251 (1334)
Q Consensus 1190 -----------~g~ik~l~~~g~np~~------~~~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~G-t~~n~e 1251 (1334)
.+++|++|++|+||+. .++++|.+++|+|++|+|+|+||.+||||||+++|+|+++ ++.+.+
T Consensus 395 ~~~~~~~~~~~~~~ik~l~~~g~Np~~~~p~~~~~~~al~~ldf~V~~D~~~teTa~~ADiVLPaat~~E~~d~~~~~~~ 474 (609)
T cd02769 395 KPFDYNGKKLTYPDIKLVYWAGGNPFHHHQDLNRLIRAWQKPETVIVHEPFWTATARHADIVLPATTSLERNDIGGSGDN 474 (609)
T ss_pred CeeeecCcccCCCCEEEEEECCCChHhcCcCHHHHHHHHhcCCEEEEecCCCCcchhhccEEecCCcHhhhcCcccccCC
Confidence 2469999999999964 3478899999999999999999999999999999999986 567778
Q ss_pred CceEEeccccCCCCCcccHHHHHHHHHHHhc
Q psy11935 1252 GRAQQTLTAVTPPGLAREDWKIIRALSEGVS 1282 (1334)
Q Consensus 1252 grvq~~~~av~P~gear~dw~Il~~La~~lg 1282 (1334)
++++..+++|+|+|++|+||+|+..||++||
T Consensus 475 ~~~~~~~~~i~P~ge~k~d~~I~~~LA~rlg 505 (609)
T cd02769 475 RYIVAMKQVVEPVGEARDDYDIFADLAERLG 505 (609)
T ss_pred ceEEEeeeccCCcccccCHHHHHHHHHHHhC
Confidence 8999999999999999999999999999999
No 47
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=100.00 E-value=2.8e-41 Score=462.86 Aligned_cols=234 Identities=15% Similarity=0.129 Sum_probs=182.7
Q ss_pred HHHHhccCCCCCCccccccccccccccccccc------cccccccccCCCcChHHHHHHhhhcCCCccceechhhhh-cc
Q psy11935 244 SKESLATRQPSEQSLIDSTTDTNCPVTQQYVP------SSNQQYAPSSNQQYSIPTSNINQQYSMFSADSTHMNIVE-RD 316 (1334)
Q Consensus 244 Vk~vL~~~~~~~~~gI~G~Vaeli~Vp~~Y~~------G~alQnIVv~~e~~Ak~aI~~LK~~~~GRaTFLPl~~Ik-r~ 316 (1334)
|+.+|.. .++|++|+|+|||+||++|++ |+.+++|||++..+|+.+|+|||.+++||+||+|||.|+ ..
T Consensus 512 i~~~~~~----~~~g~~g~l~dli~v~~~y~~Aie~~lg~~l~~ivv~~~~~a~~~i~~l~~~~~gr~tflpl~~~~~~~ 587 (1164)
T TIGR02169 512 VEEVLKA----SIQGVHGTVAQLGSVGERYATAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGRATFLPLNKMRDER 587 (1164)
T ss_pred HHHHHhc----CCCCceecHHHhcCcCHHHHHHHHHHhhhhhCCEEECCHHHHHHHHHHHHhcCCCCeeeccHhhcCCCC
Confidence 5555532 157999999999999999999 999999999999999999999999999999999999998 43
Q ss_pred CccchhccCCeEeeeccccccchhhhHHHHhhhhch--hhhHHHHHHHHhhCCCCCceEecccccccCCCCcccccccCC
Q psy11935 317 IPNSADDMRKYIEMQYSMFSADSTHMNIVERDIPNS--ADDMRKYIEMLLEKPPGNPVSDLEAEVKDSAGPMTSFLESSV 394 (1334)
Q Consensus 317 l~~~~~~~~G~iG~A~dLV~~d~~~~~Ii~~LLG~t--~e~ld~A~~iak~~~~r~RIVTLdGdvin~GGSiTGGs~~~~ 394 (1334)
++..+...+|++|.|.|||+|+++|.+++.++||+| |+|++.|..++. ++|||||||++|+|+|+||||+..+.
T Consensus 588 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~lg~~~v~~~l~~a~~~~~----~~~~vTldG~~~~~~G~~tgG~~~~~ 663 (1164)
T TIGR02169 588 RDLSILSEDGVIGFAVDLVEFDPKYEPAFKYVFGDTLVVEDIEAARRLMG----KYRMVTLEGELFEKSGAMTGGSRAPR 663 (1164)
T ss_pred CCcccccCCCchHHHHHHccCcHHHHHHHHHHCCCeEEEcCHHHHHHHhc----CCcEEEeCceeEcCCcCccCCCCCCC
Confidence 322233447999999999999999999999999998 999999999994 77999999999999999999984322
Q ss_pred CCCcccc--hhhHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHH
Q psy11935 395 TSDIFNE--PALYTKTVRSVTLKISKEKIESLERNLQTETQRSRKLEEELQDTRQTCE----EVVRKEVSIVTVTLFLER 468 (1334)
Q Consensus 395 ~~~ll~R--k~ei~~L~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~----e~~~~~~~~~~l~~~~~~ 468 (1334)
..+++.| +.++.++..++ ..++..+..++..+..+..++..+..++..+...+. ++..+..++..+..++..
T Consensus 664 ~~~~~~~~~~~~l~~l~~~l--~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~ 741 (1164)
T TIGR02169 664 GGILFSRSEPAELQRLRERL--EGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEE 741 (1164)
T ss_pred CCcccccccHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2256777 78888888888 888888888887777777777777777766655554 343444445555555554
Q ss_pred HHhhHHHHHhhHHHHHHHH
Q psy11935 469 LRSSHSKRSKNADSLVRLQ 487 (1334)
Q Consensus 469 ~~~~~~~~~~e~~~l~~~~ 487 (1334)
+...+..++.++..+...+
T Consensus 742 l~~~~~~~~~~~~~~~~el 760 (1164)
T TIGR02169 742 LEEDLSSLEQEIENVKSEL 760 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433
No 48
>PRK14991 tetrathionate reductase subunit A; Provisional
Probab=100.00 E-value=7.8e-45 Score=472.95 Aligned_cols=380 Identities=14% Similarity=0.141 Sum_probs=279.1
Q ss_pred eeeeeecccCCCCCceEEEe--eCCEEEEecCCCCCCCC--------------------------ccccccccccccccc
Q psy11935 903 RKTESVDVLDAVGSNIIVST--RTGEVLRVLPRLNEDIN--------------------------EEWLADKGRFAYDGL 954 (1334)
Q Consensus 903 ~~~~s~c~~C~~gC~i~v~v--~~g~v~ri~p~~~~~vn--------------------------~g~lC~kgr~~~~~l 954 (1334)
+.+.|+|.+|..+|++.|.| ++|+|+||.|++.||.| .|.+|.||++.++.+
T Consensus 73 ~~~~t~C~~C~~~Cgl~v~V~~~~g~v~kI~Gnp~~p~s~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~C~KG~a~~~~~ 152 (1031)
T PRK14991 73 RVANTQCLGCWTQCGVRVRVDNATNKILRIAGNPYHPLSTDHHIDMSTPVKEAFESLSGESGLEGRSTACARGNAMLEQL 152 (1031)
T ss_pred eEEeeECCCCcCCCCeEEEEECCCCeEEEeeCCCCCccccCCCCcccCCHHHHHhhhccccccccCCCcccchhhhHhhh
Confidence 67899999999999999999 46999999999999988 599999999999998
Q ss_pred -cccccCCceEecC---CCCeeecCHHHHHHHHHH-----------Hhcc-----------------CCEEEEeCCcCCH
Q psy11935 955 -KRQRLLTPFVRNC---DGQLVATEWEDALIAVAQ-----------KLQT-----------------SEVAGVVGSLADA 1002 (1334)
Q Consensus 955 -~~~Rl~~PliR~~---~g~~~~iSWdeAl~~ia~-----------~L~~-----------------~~i~~~~g~~~~~ 1002 (1334)
+|+||++||+|++ +|+|++|||||||++||+ +|++ +++.++.+.....
T Consensus 153 y~p~Rl~~PLkR~g~RGeg~w~~ISWdeAl~eIaegg~lf~e~~v~~L~~i~~~~~~id~~~p~~Gp~a~~~~~~~~~~~ 232 (1031)
T PRK14991 153 DSPYRVLQPLKRVGKRGSGKWQRISFEQLVEEVVEGGDLFGEGHVDGLRAIRDLDTPIDAKNPEYGPKANQLLVTNASDE 232 (1031)
T ss_pred hCcccccCCeeccCCCCCCceeEccHHHHHHHHHhccccccchhHHHHHHHHhhhccccccchhhCceeEEEEEEecCCc
Confidence 6999999999974 679999999999999999 6765 2333333322233
Q ss_pred HHHHHHHHHH-HHhCCCccccCCCCCcchhhhhhhhhcc----CCCCcccccccCeEEEEcCCccccchh---HHHHHHH
Q psy11935 1003 EAMVALKDLL-NKLGSEDLYTEYAFPLEGAGTDLRANYL----LNNKIAGAEEADLILLIGTNPRFEAPL---FNARIRK 1074 (1334)
Q Consensus 1003 e~~~~~~~l~-~~lGs~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~die~ad~Il~~G~np~~~~p~---~~~rir~ 1074 (1334)
...+++++|+ +.||++|++.++++|..+...+....++ +..+..|+++||+||+||+||..+++. ...++.+
T Consensus 233 g~~~~~~rf~~~~~Gt~n~~~~~~~C~~~~~~g~~~~~g~~~~~~~~~~D~~~a~~il~~G~Np~~s~~~~~~~~~~l~~ 312 (1031)
T PRK14991 233 GRDAFIKRFAFNSFGTRNFGNHGSYCGLAYRAGSGALMGDLDKNPHVKPDWDNVEFALFIGTSPAQSGNPFKRQARQLAN 312 (1031)
T ss_pred chHHHHHHHHHHhcCCCCccCCCccchHHHHhhHHHhccCCCCCCCccchhhcCcEEEEeCcChhHhCCchHHHHHHHHH
Confidence 3456678997 5999999998889998654333333332 234677999999999999999998644 3344666
Q ss_pred HHhhCCCeEEEEccCCCCcc----ccc------cCCCcHHHHHHHH---------------h------------------
Q psy11935 1075 GYLTNELDVAYIGPKVDLRY----DYE------HLGESADLIKQLA---------------S------------------ 1111 (1334)
Q Consensus 1075 a~~~~g~kiivIdp~~~~t~----~~a------~~Gtd~a~l~~l~---------------~------------------ 1111 (1334)
+..++|+|+||||||++.|+ ..+ .||||++|+.+|+ .
T Consensus 313 ar~~gg~k~VVVDPr~t~ta~~~A~~Ad~wlpIrPGTD~ALalgmi~~Iie~~~yD~~fl~~~~~~a~~~~ge~~~Tna~ 392 (1031)
T PRK14991 313 ARTRGNFEYVVVAPALPLSSSLAAGDNNRWLPIRPGTDSALAMGMIRWIIDNQRYNADYLAQPGVAAMQAAGEASWTNAT 392 (1031)
T ss_pred HHHcCCCEEEEECCCCCCchhhhhhcCCEEeCCCCCcHHHHHHHHHHHHHHcCCcCHHHHhchhhhhhhhccccccccCc
Confidence 65444599999999998865 223 3999999865432 0
Q ss_pred --------------------------------------------------------------------------------
Q psy11935 1112 -------------------------------------------------------------------------------- 1111 (1334)
Q Consensus 1112 -------------------------------------------------------------------------------- 1111 (1334)
T Consensus 393 ~LV~~d~~~~~~g~~lr~~d~g~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~l~~~~~v~~~dG~~v~v~~~f~~l 472 (1031)
T PRK14991 393 HLVIADPGHPRYGQFLRASDLGLPFEGEARGDGEDTLVVDAADGELVPATQAQPARLFVEQYVTLADGQRVRVKSSLQLL 472 (1031)
T ss_pred eEEEecCCCccccceeehhhcccccccccccCCCCCEEEECCCCcccccccccccccccceeEeccCCCeeeeeEHHHHH
Confidence
Q ss_pred ---------------------cHHHHHHHHhcCCCcEEEEcCCc---ccHHHHHH---HHHHHHHhhcCCCCCCC---CC
Q psy11935 1112 ---------------------GSHPFSKKLSAAKKPLIVVGADI---SDGAAVLA---LVQQLAAKVTCESDVPC---DW 1161 (1334)
Q Consensus 1112 ---------------------g~~~~A~~l~~a~~~~ii~G~~~---~~g~~~~~---al~~l~~~~g~~Gg~~~---~~ 1161 (1334)
.|+++|+.|+++++++++++.|. .+|....+ .|+.|+|++|.+||... .+
T Consensus 473 ke~~~~~Tpe~~a~i~GVp~e~I~~lAr~fa~~~~~~~~~~~G~~~~~nG~~~~~Ai~~L~aLtGni~~~GG~~~~~~~~ 552 (1031)
T PRK14991 473 KEAARKLSLAEYSEQCGVPEAQIIALAEEFTSHGRKAAVISHGGTMSGNGFYNAWAIMMLNALIGNLNLKGGVVVGGGKF 552 (1031)
T ss_pred HHHHhhCCHHHHHHHHCcCHHHHHHHHHHHHhcCCceEEEecccceeccHHHHHHHHHHHHHHhCCCCCCCCcccCCCcc
Confidence 14568999999888888888776 66765554 45666778888876421 11
Q ss_pred ccc--------ccchh---------------------hhh--hhhh--hhc--CCCc---c-----hhhHhcC---CCcE
Q psy11935 1162 KVL--------NILQK---------------------AAS--QVAA--LDI--GYKP---G-----TSAIREK---PPKV 1195 (1334)
Q Consensus 1162 ~~~--------~~l~~---------------------~~n--~~G~--~~~--g~~p---g-----~~~i~~g---~ik~ 1195 (1334)
... ..+++ ... ..|. ++. .+.| + +..+..| +||+
T Consensus 553 ~~~~~g~~~~~~~~~g~~~p~g~~~~r~~~~~~~~~~~~~~~~~g~~~~P~~~~~~p~~~~~~~e~l~~~~~g~Py~ika 632 (1031)
T PRK14991 553 PGFGDGPRYNLASFAGKVKPKGVSLSRSKFPYEKSSEYRRKVEAGQSPYPAKAPWYPFVAGLLTEMLTAALEGYPYPLKA 632 (1031)
T ss_pred CccCCCccccccccccccccccccccccccccccchHHhhhhhcCCCCCcccccccccccchHHHHHHHHHcCCCCCceE
Confidence 000 00000 000 0010 000 0011 1 1223456 6999
Q ss_pred EEEECCChhhh-------HHhhcC---CCceEEEEcCCCChhhccccEEecCCCCCCCCcccccCCC----ceEEecccc
Q psy11935 1196 LFLLGADEGSI-------SRDDVG---KDCFIIYQGHHGDHGASIADAILPGAAYTEKQSTYVNTEG----RAQQTLTAV 1261 (1334)
Q Consensus 1196 l~~~g~np~~~-------~~~al~---k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~Gt~~n~eg----rvq~~~~av 1261 (1334)
+|++++||+.. ..++|+ +++|+|++|+|+++|+.|||||||+++|+|++|....+.+ ..+..+|+|
T Consensus 633 li~~~~NP~~s~p~~~~~~~~aL~d~~~L~f~V~~D~~~teTa~~AD~VLP~~~~~E~~~~~~~~~~~~~~~~~~r~pvv 712 (1031)
T PRK14991 633 WINHMSNPIYGVPGLRAVIEEKLKDPKKLPLFISIDAFINETTALADYIVPDTHTYESWGFTAPWGGVPTKASTARWPVV 712 (1031)
T ss_pred EEEcCCChhhcCCcHHHHHHHHhcccccCCEEEEEeCCcCchHhhCcEEecCCCchhhccCcccccccCccceeeEeccc
Confidence 99999999642 245785 7999999999999999999999999999999986543333 244566999
Q ss_pred CCCCCcccHHH------HHHHHHHHhc
Q psy11935 1262 TPPGLAREDWK------IIRALSEGVS 1282 (1334)
Q Consensus 1262 ~P~gear~dw~------Il~~La~~lg 1282 (1334)
+|++++++||+ |+.+||++||
T Consensus 713 eP~~e~~~d~~~~~~e~i~~~LAkrlG 739 (1031)
T PRK14991 713 EPRTAKTADGQPVCMESFLIAVAKRLQ 739 (1031)
T ss_pred CCCcCcCCccchhhHHHHHHHHHHHcC
Confidence 99999999988 8999999999
No 49
>PRK09939 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.7e-44 Score=454.13 Aligned_cols=328 Identities=16% Similarity=0.220 Sum_probs=274.6
Q ss_pred cccccccc-cccccCCceEec-CCCCeeecCHHHHHHHHHHHhcc----CCEEEEeCCcCCHHHHHHHHHHHHHhCCCcc
Q psy11935 947 GRFAYDGL-KRQRLLTPFVRN-CDGQLVATEWEDALIAVAQKLQT----SEVAGVVGSLADAEAMVALKDLLNKLGSEDL 1020 (1334)
Q Consensus 947 gr~~~~~l-~~~Rl~~PliR~-~~g~~~~iSWdeAl~~ia~~L~~----~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~ 1020 (1334)
-+|++.++ +|+||++||+|. ++|+|++|||||||+.||++|++ +++++++|+++++|..|++++|++.+|++|+
T Consensus 96 ~~~~~~~l~~~~RL~~Pl~r~~g~~~~~~ISWdEAl~~Ia~~L~~i~~p~~i~~y~sg~~snE~~yl~q~f~r~~Gtnn~ 175 (759)
T PRK09939 96 LTWGDHELEAAGRLTQPLKYDAVSDCYKPLSWQQAFDEIGARLQSYSDPNQVEFYTSGRTSNEAAFLYQLFAREYGSNNF 175 (759)
T ss_pred hhhcccccCCCCcccCCeEecCCCCcEEEccHHHHHHHHHHHHHhhcCCCeEEEEeeCCchHHHHHHHHHHHHHhCCccc
Confidence 35778888 699999999996 36899999999999999999998 7889999999999999999999999999999
Q ss_pred ccCCCCCcchhhhhhhhhcc---CCCCcccccccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCCCC-----
Q psy11935 1021 YTEYAFPLEGAGTDLRANYL---LNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDL----- 1092 (1334)
Q Consensus 1021 ~~~~~~~~~~~~~~~~~~~~---~~~~~~die~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~~~----- 1092 (1334)
+.++++|+.+...++..++| .+.++.|+++||+||+||+||..+||++..+++++. ++|+|||||||+.+.
T Consensus 176 ~~~s~~C~~~~~~~l~~~~G~g~~t~~l~Di~~ad~Ili~G~Np~~~hP~~~~~l~~a~-~rGakiIvIDPr~~~gl~rf 254 (759)
T PRK09939 176 PDCSNMCHEPTSVGLAASIGVGKGTVLLEDFEKCDLVICIGHNPGTNHPRMLTSLRALV-KRGAKMIAINPLQERGLERF 254 (759)
T ss_pred CCCCCCCchHHHHHHHHhcCCCCCCCCHHHHhhCCEEEEeCCChHHHHHHHHHHHHHHH-HCCCEEEEECCCCccccccc
Confidence 88888998776666655554 245889999999999999999999999999999885 689999999997642
Q ss_pred -------------cccccc------CCCcHHHHHHHH-------------------------------------------
Q psy11935 1093 -------------RYDYEH------LGESADLIKQLA------------------------------------------- 1110 (1334)
Q Consensus 1093 -------------t~~~a~------~Gtd~a~l~~l~------------------------------------------- 1110 (1334)
++..++ ||+|.+++.+|+
T Consensus 255 t~p~~~~~~~~~~ta~~Ad~~l~irPGtD~ALl~gm~~~li~~~~~~~~~~~~~~~D~~FI~~~t~Gfe~~~~~v~~~~~ 334 (759)
T PRK09939 255 TAPQNPFEMLTNSETQLASAYYNVRIGGDMALLKGMMRLLIERDDAASAAGRPSLLDDEFIQTHTVGFDELRRDVLNSEW 334 (759)
T ss_pred ccccccchhccccchhhhCeeeCCCCChHHHHHHHHHHHHHHCCCcccccccccccCHHHHHHhcCCHHHHHHHHhhCCH
Confidence 344443 999999876543
Q ss_pred -----------hcHHHHHHHHhcCCCcEEEEcCCc---ccHHHHHHHHHHH---HHhhcCCCCCCCCCcccccchhhhhh
Q psy11935 1111 -----------SGSHPFSKKLSAAKKPLIVVGADI---SDGAAVLALVQQL---AAKVTCESDVPCDWKVLNILQKAASQ 1173 (1334)
Q Consensus 1111 -----------~g~~~~A~~l~~a~~~~ii~G~~~---~~g~~~~~al~~l---~~~~g~~Gg~~~~~~~~~~l~~~~n~ 1173 (1334)
+.|+++|+.|+++++++|+||+|+ .+|...++++.+| +|++|++|+ |+.+++++.|.
T Consensus 335 e~v~~~tGv~~~~I~~~A~~~a~a~~~ii~~gmGitqh~~G~~~v~~i~nL~lltGniGrpGa------G~~plrG~~Nv 408 (759)
T PRK09939 335 KDIERISGLSQTQIAELADAYAAAERTIICYGMGITQHEHGTQNVQQLVNLLLMKGNIGKPGA------GICPLRGHSNV 408 (759)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhCCCEEEEeCCcccccCcHHHHHHHHHHHHHHhCCCCCCCc------ccccCcCcccC
Confidence 014578999999999999999998 6787777766655 456666653 35677778888
Q ss_pred hhhhhcCCC----------------------cc------hhhHhcCCCcEEEEECCChhh------hHHhhcCCCceEEE
Q psy11935 1174 VAALDIGYK----------------------PG------TSAIREKPPKVLFLLGADEGS------ISRDDVGKDCFIIY 1219 (1334)
Q Consensus 1174 ~G~~~~g~~----------------------pg------~~~i~~g~ik~l~~~g~np~~------~~~~al~k~~fvV~ 1219 (1334)
+|+.++|.. || +++|..|++|++|++|+||+. .+.+||.+++|+|+
T Consensus 409 qG~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~G~~~~~~~~a~~~G~ikal~~~G~Np~~s~Pd~~~~~~AL~~ld~~V~ 488 (759)
T PRK09939 409 QGDRTVGITEKPSAEFLARLGERYGFTPPHAPGHAAIASMQAICTGQARALICMGGNFALAMPDREASAVPLTQLDLAVH 488 (759)
T ss_pred CCccccCCCCCCCHHHHHHHHHhcCCCCCccCCCCHHHHHHHHhcCCceEEEEeCCChhccCcCHHHHHHHHhcCCcEEE
Confidence 888777643 23 345678999999999999964 35789999999999
Q ss_pred EcCCCCh----hhccccEEecCCCCCCC----Cc----ccccCCCceEEeccccCCCCC-cccHHHHHHHHHHHhc
Q psy11935 1220 QGHHGDH----GASIADAILPGAAYTEK----QS----TYVNTEGRAQQTLTAVTPPGL-AREDWKIIRALSEGVS 1282 (1334)
Q Consensus 1220 ~d~~~~e----ta~~ADvVLP~a~~~Ek----~G----t~~n~egrvq~~~~av~P~ge-ar~dw~Il~~La~~lg 1282 (1334)
+|+|+|+ |+.+ |||||+++|+|+ .| |+.|++++++..+++++|+|+ +|+||+|+..||+++.
T Consensus 489 ~d~~ln~~~~~t~~~-dvVLP~~~~~E~d~~~~g~q~~t~~~~~~~v~~s~~~~~P~g~~~~se~~I~~~lA~~~~ 563 (759)
T PRK09939 489 VATKLNRSHLLTARH-SYILPVLGRSEIDMQKSGAQAVTVEDSMSMIHASRGVLKPAGVMLKSECAVVAGIAQAAL 563 (759)
T ss_pred EeeeecCcccchhhh-cEEecCCCccccccccCCCceeEEEcCCceEEccCCCCCCCCccccCHHHHHHHHHHHhc
Confidence 9999996 6776 999999999998 46 889999999999999999996 7999999999999984
No 50
>TIGR02164 torA trimethylamine-N-oxide reductase TorA. This very narrowly defined family represents TorA, part of a family of related molybdoenzymes that include biotin sulfoxide reductases, dimethyl sulfoxide reductases, and at least two different subfamilies of trimethylamine-N-oxide reductases. A single enzyme from the larger family may have more than one activity. TorA typically is located in the periplasm, has a Tat (twin-arginine translocation)-dependent signal sequence, and is encoded in a torCAD operon.
Probab=100.00 E-value=9.7e-44 Score=461.98 Aligned_cols=366 Identities=17% Similarity=0.212 Sum_probs=246.2
Q ss_pred eecccCCCCCceEEEeeCCEEEEecCCCCCCCCccccccccccccccc-cccccCCceEec--------------CCCCe
Q psy11935 907 SVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGL-KRQRLLTPFVRN--------------CDGQL 971 (1334)
Q Consensus 907 s~c~~C~~gC~i~v~v~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l-~~~Rl~~PliR~--------------~~g~~ 971 (1334)
++|.+| |++.++|+||+|++|.|+++++.+.+ |.+|. .+.+ +|+||++||+|+ |+|+|
T Consensus 42 ~~~~~~---~~l~~~V~dG~v~~v~gd~~~~~~~~--~~~g~--~~~~y~pdRl~~PlkR~~~~~~~~~~~~g~RG~g~f 114 (822)
T TIGR02164 42 TTGSHW---GAFRAKVKNGKVVEVKPFELDKYPTE--MINGI--RGMVYNPSRVRYPMVRLDWLKKRHKSNTHQRGDNRF 114 (822)
T ss_pred ccCCCc---CceEEEEECCEEEEEecCCCCCccch--hhhcc--hhhccCchhccCCceecchhhccCCCCcccCCCCCE
Confidence 466666 46999999999999999986666554 77773 4666 699999999996 36899
Q ss_pred eecCHHHHHHHHHHHhcc-------CCEEE-EeCCcCCHHHHHHHHHHHHHhCCC-c-cccCCCCCcchhhhhh------
Q psy11935 972 VATEWEDALIAVAQKLQT-------SEVAG-VVGSLADAEAMVALKDLLNKLGSE-D-LYTEYAFPLEGAGTDL------ 1035 (1334)
Q Consensus 972 ~~iSWdeAl~~ia~~L~~-------~~i~~-~~g~~~~~e~~~~~~~l~~~lGs~-~-~~~~~~~~~~~~~~~~------ 1035 (1334)
++|||||||++||++|++ ++|++ ..+...+....+...+|++.+|+. + +.....+|........
T Consensus 115 ~rISWDEAld~IA~kl~~i~~~yG~~si~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~ 194 (822)
T TIGR02164 115 VRVTWDEALDLFYEELERVQKQYGPSALHAGQTGWRSTGQFHSCTSHMQRAVGMHGNYVKKIGDYSTGAGQTILPYVLGS 194 (822)
T ss_pred EEecHHHHHHHHHHHHHHHHHhhCcceeEecccccccCCCCCchHHHHHHHhcccCCCcCCCCCccHHHHhhhcCceecc
Confidence 999999999999999988 45643 222221111122334567777753 2 3332334432111111
Q ss_pred hhhccCCCCcc-cccccCeEEEEcCCccccc---------hhHH--HHHHHHHhhCCCeEEEEccCCCCcccc-cc----
Q psy11935 1036 RANYLLNNKIA-GAEEADLILLIGTNPRFEA---------PLFN--ARIRKGYLTNELDVAYIGPKVDLRYDY-EH---- 1098 (1334)
Q Consensus 1036 ~~~~~~~~~~~-die~ad~Il~~G~np~~~~---------p~~~--~rir~a~~~~g~kiivIdp~~~~t~~~-a~---- 1098 (1334)
...|+.+.+.. ++++||+||+||+||.+++ |++. .+++++.+++|+||||||||++.|+.. ++
T Consensus 195 ~~~~g~~~~~~~~~~~a~~il~wG~Np~~s~~~~~~~~~~~~~~~~~~~~~~~~~ggaklIvIDPr~t~tA~~~ad~~l~ 274 (822)
T TIGR02164 195 TEVYAQGTSWPLILENSDTIVLWANDPVKNLQVGWNCETHESFAYLAQLKEKVAAGEINVISIDPVVTKTQAYLGCEHLY 274 (822)
T ss_pred hhhccCCCChHHHHHhCCEEEEECCCHHHhcCcccccCCCchHHHHHHHHHHhhCCCceEEEECCCCCchhhhccCeEec
Confidence 11122233344 4699999999999998763 5432 123344323469999999999999875 33
Q ss_pred --CCCcHHHHHHHH------------------h--------------------------------cHHHHHHHHhcCCCc
Q psy11935 1099 --LGESADLIKQLA------------------S--------------------------------GSHPFSKKLSAAKKP 1126 (1334)
Q Consensus 1099 --~Gtd~a~l~~l~------------------~--------------------------------g~~~~A~~l~~a~~~ 1126 (1334)
||||.+|+.+|+ . .|+++|+.|+.+ ++
T Consensus 275 irPGTD~AL~lam~~vii~e~l~D~~Fi~~~t~Gfe~~~~~l~~~~~g~~~tpe~aa~itGV~ae~I~~lA~~~a~~-~~ 353 (822)
T TIGR02164 275 VNPQTDVALMLALAHTLYSENLYDKKFIEGYCLGFEEFLPYVLGSKDGVAKTPEWAAKICGVEAEVIRDLARMLVKG-RT 353 (822)
T ss_pred cCCCcHHHHHHHHHHHHHHCCCccHHHHHHhcccHHHHHHHhccccCCCcCCHHHHHHHHCcCHHHHHHHHHHHHhc-CC
Confidence 999999987653 1 146789999984 46
Q ss_pred EEEEcCCc---ccHHHHHH---HHHHHHHhhcCCCCCCC-C--Cc--ccc--------cchh----hhh-hhhhh-hcCC
Q psy11935 1127 LIVVGADI---SDGAAVLA---LVQQLAAKVTCESDVPC-D--WK--VLN--------ILQK----AAS-QVAAL-DIGY 1181 (1334)
Q Consensus 1127 ~ii~G~~~---~~g~~~~~---al~~l~~~~g~~Gg~~~-~--~~--~~~--------~l~~----~~n-~~G~~-~~g~ 1181 (1334)
++++|++. .+|....+ .|..|+|++|++||+.. + ++ +.. .++. ... ..... ..|.
T Consensus 354 ~~~~g~g~~~~~~g~~~~rai~~L~altGnig~pGgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (822)
T TIGR02164 354 QLIFGWCIQRQQHGEQPYWMGAVLAAMIGQIGLPGGGISYGHHYSSIGVPSSGAAAPGAFPRNLDEGQKPKFDNSDFKGY 433 (822)
T ss_pred EEEEeccchhhhcchHHHHHHHHHHHHhCcCCCCCCcccccccccCCCCcccccccCcCccccCCcccccccccccccCc
Confidence 66677765 45555444 45566778888876421 0 00 000 0000 000 00000 0010
Q ss_pred ---Ccc---hhhHhc--------------CCCcEEEEECCChhh------hHHhhcCCCceEEEEcCCCChhhccccEEe
Q psy11935 1182 ---KPG---TSAIRE--------------KPPKVLFLLGADEGS------ISRDDVGKDCFIIYQGHHGDHGASIADAIL 1235 (1334)
Q Consensus 1182 ---~pg---~~~i~~--------------g~ik~l~~~g~np~~------~~~~al~k~~fvV~~d~~~~eta~~ADvVL 1235 (1334)
.|. .+++.. +++|++|++|.||+. .+.++|++++|+|++|+|+|+||.||||||
T Consensus 434 ~~~~p~~~~~~~i~~~g~~~~~~~~~~~~~~ik~l~v~g~Np~~~~p~~~~~~~al~kldf~V~~D~~~teTa~~ADiVL 513 (822)
T TIGR02164 434 SSTIPVARWIDAILEPGKTIDHNGSKVTYPPIKMMIFSGCNPWHHHQDRNRMKQAFQKLETVVTIDVSWTATCRFSDIVL 513 (822)
T ss_pred cccccHhHHHHHhcCCCceeccCCcccCCCCeEEEEEcCCCHHhcCcCHHHHHHHHhcCCEEEEecCcCChhhhhCCEEe
Confidence 111 123322 359999999999964 257889999999999999999999999999
Q ss_pred cCCCCCCCCc-----ccccCCCceEEeccccCCCCCcccHHHHHHHHHHHhc
Q psy11935 1236 PGAAYTEKQS-----TYVNTEGRAQQTLTAVTPPGLAREDWKIIRALSEGVS 1282 (1334)
Q Consensus 1236 P~a~~~Ek~G-----t~~n~egrvq~~~~av~P~gear~dw~Il~~La~~lg 1282 (1334)
|+++|+|+++ +++ .++++..+|+|+|+|++|+||+|+.+||++||
T Consensus 514 Paat~~E~~d~~~~g~~~--~~~~~~~~~~i~P~geak~d~eI~~~LA~rlG 563 (822)
T TIGR02164 514 PACTQFERNDIDVYGSYS--NRGIIAMQKLVDPLFDSRSDFEIFTELCRRFG 563 (822)
T ss_pred cCCccccccccccccccc--CcccceeccccCCcccccCHHHHHHHHHHHhC
Confidence 9999999984 443 36799999999999999999999999999999
No 51
>TIGR00509 bisC_fam molybdopterin guanine dinucleotide-containing S/N-oxide reductases. This enzyme family shares sequence similarity and a requirement for a molydenum cofactor as the only prosthetic group. The form of the cofactor is a single molybdenum atom coordinated by two molybdopterin guanine dinucleotide molecules. Members of the family include biotin sulfoxide reductase, dimethylsulfoxide reductase, and trimethylamine-N-oxide reductase, although a single member may show all those activities and related activities; it may not be possible to resolve the primary function for members of this family by sequence comparison alone. A number of similar molybdoproteins in which the N-terminal region contains a CXXXC motif and may bind an iron-sulfur cluster are excluded from this set, including formate dehydrogenases and nitrate reductases. Also excluded is the A chain of a heteromeric, anaerobic DMSO reductase, which also contains the CXXXC motif.
Probab=100.00 E-value=8.4e-44 Score=460.64 Aligned_cols=358 Identities=18% Similarity=0.184 Sum_probs=255.9
Q ss_pred CCceEEEeeCCEEEEecCCCCCCCCccccccccccccccc-cccccCCceEecC--------------CCCeeecCHHHH
Q psy11935 915 GSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGL-KRQRLLTPFVRNC--------------DGQLVATEWEDA 979 (1334)
Q Consensus 915 gC~i~v~v~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l-~~~Rl~~PliR~~--------------~g~~~~iSWdeA 979 (1334)
.|++.++|+||+|++|.|++.||.+. .+|+...+.+ +|+||++||+|++ +|+|++||||||
T Consensus 4 ~~~l~~~V~dG~i~~v~g~~~~p~~~----~~~~~~~~~~y~pdRl~~PL~R~g~~~~~~~~~~~~rG~g~f~~iSWDEA 79 (770)
T TIGR00509 4 WGVFTATVQDGRIVAVTPFESDPNPT----PMLEGVPDQVYSESRIKYPMVRKGFLENGVKSDRSGRGREEFVRVSWDEA 79 (770)
T ss_pred cCceEEEEECCEEEEeecCCCCCCcc----HhHhcchhhccChhhccCCeeecchhhccCCCccccCCCCCeEEecHHHH
Confidence 37899999999999999999888764 4466677877 6999999999964 478999999999
Q ss_pred HHHHHHHhcc-------CCEEEEe-C----CcCCHHHHHHHHHHHHHhCCCccccCCCCCcchhhhhhhhh------ccC
Q psy11935 980 LIAVAQKLQT-------SEVAGVV-G----SLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRAN------YLL 1041 (1334)
Q Consensus 980 l~~ia~~L~~-------~~i~~~~-g----~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~------~~~ 1041 (1334)
|+.||++|++ ++|+++. + +.... ..+++.+|++.+|+.+. +...+|..+........ |+.
T Consensus 80 l~~IA~kl~~i~~~~G~~si~~~~~~~~~~g~~~~-~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~g~~~~~g~ 157 (770)
T TIGR00509 80 LDLVAEELKRVRKTHGPSAIFAGSYGWKSAGRLHN-ASTLLQRMLNLLGGYVG-HAGDYSTGAAQVIMPHVVGDMEVYEQ 157 (770)
T ss_pred HHHHHHHHHHHHHhcCChhheecccCcccCCcccc-cHHHHHHHHHhcCCCcC-CCCCcchhhHhhccCceeecccccCC
Confidence 9999999987 4565432 1 12222 24677899999997432 23455654321111111 222
Q ss_pred CCCcc-cccccCeEEEEcCCccccchh--------HHHHHHHHHhhCCCeEEEEccCCCCccccc-c------CCCcHHH
Q psy11935 1042 NNKIA-GAEEADLILLIGTNPRFEAPL--------FNARIRKGYLTNELDVAYIGPKVDLRYDYE-H------LGESADL 1105 (1334)
Q Consensus 1042 ~~~~~-die~ad~Il~~G~np~~~~p~--------~~~rir~a~~~~g~kiivIdp~~~~t~~~a-~------~Gtd~a~ 1105 (1334)
..+.. ++++||+||+||+||.+++|+ ...+++++ +++|+||||||||++.|+..+ + ||||++|
T Consensus 158 ~~~~~~~~~~a~~il~~G~Np~~t~~~~~~~~~~~~~~~~~~a-~~~G~klIvIDPr~t~tA~~aaD~~l~irPGTD~AL 236 (770)
T TIGR00509 158 QTTWPVILENSKVLVLWGADPLKTSQIAWGIPDHGGYEYLERL-KAKGKRVISIDPVRTETAEFFGAEWIPPNPQTDVAL 236 (770)
T ss_pred cCCcHHHHhcCCEEEEeCCCHHHhCccccccCCcchHHHHHHH-HHcCCEEEEEcCCCCcchhhccCeEeCcCCCcHHHH
Confidence 23344 479999999999999999873 33667666 468999999999999998863 3 9999999
Q ss_pred HHHHH------------------hc--------------------------------HHHHHHHHhcCCCcEEEEcCCc-
Q psy11935 1106 IKQLA------------------SG--------------------------------SHPFSKKLSAAKKPLIVVGADI- 1134 (1334)
Q Consensus 1106 l~~l~------------------~g--------------------------------~~~~A~~l~~a~~~~ii~G~~~- 1134 (1334)
+.+|+ .| |+++|+.|+.+ +++|++|+|.
T Consensus 237 ~lam~~~ii~e~l~D~~fi~~~t~gfe~~~~~l~~~~~g~~~tpe~aa~itGV~a~~I~~lA~~~a~~-~~~i~~g~g~~ 315 (770)
T TIGR00509 237 MLGLAHTLVTEGLYDKDFLAKYTSGFEKFLPYLLGETDGTPKTAEWASKITGVPAETIKELARLFASK-RTMLAAGWSMQ 315 (770)
T ss_pred HHHHHHHHHHcccccHHHHHHHcccHHHHHHHhcCCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHhc-cceeeccchhh
Confidence 87653 11 46788999876 5777777776
Q ss_pred --ccHHHHHH---HHHHHHHhhcCCCCCCCCCcccc----------cchhhhhhhh----hhh----cCCCcc---hhh-
Q psy11935 1135 --SDGAAVLA---LVQQLAAKVTCESDVPCDWKVLN----------ILQKAASQVA----ALD----IGYKPG---TSA- 1187 (1334)
Q Consensus 1135 --~~g~~~~~---al~~l~~~~g~~Gg~~~~~~~~~----------~l~~~~n~~G----~~~----~g~~pg---~~~- 1187 (1334)
.+|....+ +|..|+|++|++||+.....+.+ .++...+... .+. .+..|. .+.
T Consensus 316 ~~~~g~~~~rai~~L~altGnig~~Ggg~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 395 (770)
T TIGR00509 316 RMQHGEQPHWMLVTLAAMLGQIGLPGGGFGFSYHYSGGGTPSASGPALSQGSNSVSTKAPEWLDDGGASVIPVARISDAL 395 (770)
T ss_pred hhhcchHHHHHHHHHHHHhCcCCCCCcccccccCcCCCCCCCccCCCCcccCCccccccchhhhccccccccHHHHHHHh
Confidence 45655544 45566777778875421000000 0000000000 000 000110 011
Q ss_pred -------------HhcCCCcEEEEECCChhh------hHHhhcCCCceEEEEcCCCChhhccccEEecCCCCCCCC----
Q psy11935 1188 -------------IREKPPKVLFLLGADEGS------ISRDDVGKDCFIIYQGHHGDHGASIADAILPGAAYTEKQ---- 1244 (1334)
Q Consensus 1188 -------------i~~g~ik~l~~~g~np~~------~~~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~---- 1244 (1334)
+..++||++|++|+||+. .++++|++++|+|++|+|+|+||.|||||||+++|+|++
T Consensus 396 ~~~~~~~~~~~~~~~~~~ik~l~v~g~Np~~s~p~~~~~~~aL~~ldf~Vv~D~f~teTa~~ADiVLPaat~lE~~d~~~ 475 (770)
T TIGR00509 396 LNPGKEIDYNGKELKLPDIKMVYWAGGNPFHHHQDTNRLIKAWRKLETIIVHEPQWTPTAKHADIVLPATTSFERNDLTM 475 (770)
T ss_pred hCCCCeeccCCccccCCCeEEEEECCCChhHhCCCHHHHHHHHhcCCEEEEecCcCCchHhhCCEEeCCCchhhcccccc
Confidence 223689999999999964 357899999999999999999999999999999999998
Q ss_pred -cccccCCCceEEeccccCCCCCcccHHHHHHHHHHHhc
Q psy11935 1245 -STYVNTEGRAQQTLTAVTPPGLAREDWKIIRALSEGVS 1282 (1334)
Q Consensus 1245 -Gt~~n~egrvq~~~~av~P~gear~dw~Il~~La~~lg 1282 (1334)
|+|+| ++++..+++|+|+|++|+||+|+.+||++||
T Consensus 476 ~~~~~~--~~~~~~~~~v~P~ge~r~d~~I~~~LA~rlg 512 (770)
T TIGR00509 476 AGDYSN--TGILAMKQVVPPQFEARNDYDIFAALAERLG 512 (770)
T ss_pred cccccC--CeeEEeecccCCCccccCHHHHHHHHHHHhC
Confidence 44543 6799999999999999999999999999999
No 52
>TIGR01580 narG respiratory nitrate reductase, alpha subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the alpha subunit for nitrate reductase I (narG) and nitrate reductase II (narZ) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model The seed members used to make the model include Nitrate reductases from Pseudomonas fluorescens, E.coli and B.subtilis. All seed members are experimentally characterized. Some unpublished nitrate reductases, that are shorter sequences, and probably fragments fall in between the noise and trusted cutoffs. P
Probab=100.00 E-value=4.5e-43 Score=441.36 Aligned_cols=203 Identities=14% Similarity=0.025 Sum_probs=160.7
Q ss_pred eeeeeec-ccCCCCCceEEEeeCCEEEEecCC-------CCCCCCccccccccccccccc-cccccCCceEec-------
Q psy11935 903 RKTESVD-VLDAVGSNIIVSTRTGEVLRVLPR-------LNEDINEEWLADKGRFAYDGL-KRQRLLTPFVRN------- 966 (1334)
Q Consensus 903 ~~~~s~c-~~C~~gC~i~v~v~~g~v~ri~p~-------~~~~vn~g~lC~kgr~~~~~l-~~~Rl~~PliR~------- 966 (1334)
+.+.|+| ++|+.+|++.|+|+||+|+++.|+ +++|.+++.+|.||++..+.+ +|+||++||+|+
T Consensus 43 kvv~stc~~nC~~~Cs~~v~VkDG~V~~~~~~~dyP~~~~d~P~~~~R~C~KG~s~~~~vYsPdRLkyPmkR~~~l~~~~ 122 (1235)
T TIGR01580 43 KIVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWYIYSANRLKYPMMRKRLMKLWR 122 (1235)
T ss_pred eEEEeecCCCCCCCCceEEEEECCEEEEEEccCCCCCCCCCCCcCCCccChhhhhhHhhhCCcccccCCeeccchhhhhh
Confidence 5677776 569999999999999999999876 355778999999999988888 699999999995
Q ss_pred ------------------------------CCCCeeecCHHHHHHHHHHHhcc-------CCEEEEeCCc-CCHHHHHHH
Q psy11935 967 ------------------------------CDGQLVATEWEDALIAVAQKLQT-------SEVAGVVGSL-ADAEAMVAL 1008 (1334)
Q Consensus 967 ------------------------------~~g~~~~iSWdeAl~~ia~~L~~-------~~i~~~~g~~-~~~e~~~~~ 1008 (1334)
|.|+|++||||||+++||++|.. ++|+++.+.. .+.....+.
T Consensus 123 ~a~~~~~dpv~aw~~i~~~~~k~~~y~g~RG~G~fvRISWDEAldlIAakl~~i~~kYGPdsI~~fs~~~a~s~~s~aa~ 202 (1235)
T TIGR01580 123 EAKQTHSDPVEAWASIVENADKAKSYKQARGRGGFVRSSWQEVNELIAASNVYTVKNYGPDRVVGFSPIPAMSMVSYASG 202 (1235)
T ss_pred hhhhccCChhhhhhhhcccccccccccccCCCCCEEEecHHHHHHHHHHHHHHHHHHhCcceEEEecCCCcccchhhHHH
Confidence 24789999999999999999987 7787665432 233333455
Q ss_pred HHHHHHhCCCccccCCCCCcchhhhhhhhhccC---CCCcccccccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEE
Q psy11935 1009 KDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLL---NNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAY 1085 (1334)
Q Consensus 1009 ~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~die~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiiv 1085 (1334)
.+|++.+|++++++...+|..+.+ ....+|. .....|+.+|++||+||+||..+......++.++. .+|+||||
T Consensus 203 ~Rfl~llGg~~~~~~d~~Cd~p~a--~p~v~G~~t~~~e~~D~~nS~~II~WGsN~~~T~~p~a~~l~eAr-~rGaKvVV 279 (1235)
T TIGR01580 203 SRYLSLIGGTCLSFYDWYCDLPPA--SPQTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVR-YKGTKTVA 279 (1235)
T ss_pred HHHHHhcCCccccCCCCcchhhHH--hHhheecCCCCCCchhhhcCCEEEEECCChhhhcchhHHHHHHHH-HcCCeEEE
Confidence 789999999998877778865532 3334442 23457899999999999999888655677777775 68999999
Q ss_pred EccCCCCcccccc------CCCcHHHHHH
Q psy11935 1086 IGPKVDLRYDYEH------LGESADLIKQ 1108 (1334)
Q Consensus 1086 Idp~~~~t~~~a~------~Gtd~a~l~~ 1108 (1334)
|||+++.++..++ ||||+||+.+
T Consensus 280 VDPr~t~tA~~AD~WLpIrPGTD~ALaLA 308 (1235)
T TIGR01580 280 ITPDYAEIAKLCDLWLAPKQGTDAALALA 308 (1235)
T ss_pred EcCCCChhhHhhCEEeCCCCChHHHHHHH
Confidence 9999998877664 7888776544
No 53
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=2.7e-43 Score=434.40 Aligned_cols=327 Identities=18% Similarity=0.249 Sum_probs=266.5
Q ss_pred cccccc-cccccCCceEecC-CCCeeecCHHHHHHHHHHHhcc---CCEEEEeCCcCCHHHHHHHHHHHHHhCCCccccC
Q psy11935 949 FAYDGL-KRQRLLTPFVRNC-DGQLVATEWEDALIAVAQKLQT---SEVAGVVGSLADAEAMVALKDLLNKLGSEDLYTE 1023 (1334)
Q Consensus 949 ~~~~~l-~~~Rl~~PliR~~-~g~~~~iSWdeAl~~ia~~L~~---~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~ 1023 (1334)
+++..+ +++||++||+|.. +|+|++|||||||+.||++|++ +++++++|++.++|..|++++|++.+|++|+++.
T Consensus 54 ~~~~~l~~~~RL~~Pm~R~~G~g~~~~ISWDEAl~~IA~kL~~~~~~~~~~y~sg~~snE~~~l~q~f~r~lGt~n~~~~ 133 (574)
T cd02767 54 WSDYELEHLGRLTYPMRYDAGSDHYRPISWDEAFAEIAARLRALDPDRAAFYTSGRASNEAAYLYQLFARAYGTNNLPDC 133 (574)
T ss_pred CChhhccCCCccCCCEEecCCCCCEEEecHHHHHHHHHHHHhhhCCCcEEEEecCCCccHHHHHHHHHHHHhCCCCcCCC
Confidence 444456 6999999999973 6899999999999999999998 7888899999999999999999999999999988
Q ss_pred CCCCcchhhhhhhhhccC---CCCcccccccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCCC---------
Q psy11935 1024 YAFPLEGAGTDLRANYLL---NNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVD--------- 1091 (1334)
Q Consensus 1024 ~~~~~~~~~~~~~~~~~~---~~~~~die~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~~--------- 1091 (1334)
+++|+.+...++..++|. +.++.|+++||+||+||+||..++|.+..++++++ ++|+|||+|||+.+
T Consensus 134 s~~C~~~~~~al~~~~G~~~~t~~~~Di~~ad~Il~~G~Np~~~~p~~~~~l~~A~-~rGakIIvIdP~~~~gl~~f~~p 212 (574)
T cd02767 134 SNMCHEPSSVGLKKSIGVGKGTVSLEDFEHTDLIFFIGQNPGTNHPRMLHYLREAK-KRGGKIIVINPLREPGLERFANP 212 (574)
T ss_pred CCCcchHHHhHHHHhcCCCCCCCCHHHHhcCCEEEEEcCChhhhcHHHHHHHHHHH-HCCCEEEEECCCccccccccccc
Confidence 899987766666655542 46789999999999999999999999999999885 68999999999865
Q ss_pred --------Cccccc------cCCCcHHHHHHHH-----h-----------------------------------------
Q psy11935 1092 --------LRYDYE------HLGESADLIKQLA-----S----------------------------------------- 1111 (1334)
Q Consensus 1092 --------~t~~~a------~~Gtd~a~l~~l~-----~----------------------------------------- 1111 (1334)
.++..+ .||+|.+++.+|+ .
T Consensus 213 ~~~~~~lt~~a~~Ad~~l~irPGtD~AL~~gl~k~li~~~~~~~~~~D~~Fi~~~t~Gfd~~~~~l~~~t~e~~~~~tGv 292 (574)
T cd02767 213 QNPESMLTGGTKIADEYFQVRIGGDIALLNGMAKHLIERDDEPGNVLDHDFIAEHTSGFEEYVAALRALSWDEIERASGL 292 (574)
T ss_pred cccccccccchhhhCeeeCCCCCcHHHHHHHHHHHHHhCccccCCCcCHHHHHHHccCHHHHHHHHHcCCHHHHHhHhCc
Confidence 223333 3999999876543 1
Q ss_pred ---cHHHHHHHHhcCCCcEEEEcCCc---ccHHHHHHHHHHHH---HhhcCCCCCCCCCcccccchhhhhhhhhhhcCCC
Q psy11935 1112 ---GSHPFSKKLSAAKKPLIVVGADI---SDGAAVLALVQQLA---AKVTCESDVPCDWKVLNILQKAASQVAALDIGYK 1182 (1334)
Q Consensus 1112 ---g~~~~A~~l~~a~~~~ii~G~~~---~~g~~~~~al~~l~---~~~g~~Gg~~~~~~~~~~l~~~~n~~G~~~~g~~ 1182 (1334)
.|+++|+.|+.+++++|++|+|+ .+|..+++++.+|+ |++|++|+ |+.+++++.|.+|..++|..
T Consensus 293 ~~e~I~~~A~~~a~a~~~ii~~g~Gi~q~~~g~~~v~ai~~L~~LtGniGr~G~------G~~~~~g~snvqG~~~~g~~ 366 (574)
T cd02767 293 SREEIEAFAAMYAKSERVVFVWGMGITQHAHGVDNVRAIVNLALLRGNIGRPGA------GLMPIRGHSNVQGDRTMGIT 366 (574)
T ss_pred CHHHHHHHHHHHHhCCCEEEEecchhcccchHHHHHHHHHHHHHHhCCCCCCCC------CCCcCCCCCCCCCCcccCCC
Confidence 14578999999999999999998 67777777666554 55666653 23344445555554444421
Q ss_pred ----------------------cc------hhhHhcCCCcEEEEECCChhh------hHHhhcCCCceEEEEcCCCChhh
Q psy11935 1183 ----------------------PG------TSAIREKPPKVLFLLGADEGS------ISRDDVGKDCFIIYQGHHGDHGA 1228 (1334)
Q Consensus 1183 ----------------------pg------~~~i~~g~ik~l~~~g~np~~------~~~~al~k~~fvV~~d~~~~eta 1228 (1334)
+| ++++..|++|++|++|+||+. .+.++|.+++|+|++|+++|+|+
T Consensus 367 ~~~~~~~~~~l~~~~g~~~P~~~g~~~~~~~~a~~~g~ik~l~~~ggNp~~~~pd~~~~~~AL~kld~~V~~d~~~~~t~ 446 (574)
T cd02767 367 EKPFPEFLDALEEVFGFTPPRDPGLDTVEAIEAALEGKVKAFISLGGNFAEAMPDPAATEEALRRLDLTVHVATKLNRSH 446 (574)
T ss_pred CCCCHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHhcCCceEEEEecCCHHhcCcCHHHHHHHHhcCCeEEEEecccchhh
Confidence 12 245678999999999999964 24689999999999999999999
Q ss_pred c---cccEEecCCCC--------------CCCCcccccC-------CCceEEecccc------CCCCCcccHHHHHHHHH
Q psy11935 1229 S---IADAILPGAAY--------------TEKQSTYVNT-------EGRAQQTLTAV------TPPGLAREDWKIIRALS 1278 (1334)
Q Consensus 1229 ~---~ADvVLP~a~~--------------~Ek~Gt~~n~-------egrvq~~~~av------~P~gear~dw~Il~~La 1278 (1334)
. +||||||++++ +|++|++++. .++++...++| +|+|++|+||+|+..|+
T Consensus 447 ~~~~~adiILP~~~~~e~d~~~~~~~~~~~E~~~~~v~~s~g~~~~~~~~~~se~ai~~~~~~~~~ge~r~dw~i~~~la 526 (574)
T cd02767 447 LVHGEEALILPCLGRTEIDMQAGGAQAVTVEDSMSMTHTSRGRLKPASRVLLSEEAIVAGIAGARLGEAKPEWEILVEDY 526 (574)
T ss_pred cccCCCeEEeCCCccccccccccccccceEecCCceEecCCCccCCCCccceehhhhcccccccCCCCCcccHHHHHHHH
Confidence 4 79999999999 8998987763 35688899999 99999999999999999
Q ss_pred HHhc
Q psy11935 1279 EGVS 1282 (1334)
Q Consensus 1279 ~~lg 1282 (1334)
++|+
T Consensus 527 ~~i~ 530 (574)
T cd02767 527 DRIR 530 (574)
T ss_pred HHHH
Confidence 9999
No 54
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.
Probab=100.00 E-value=3.3e-43 Score=447.81 Aligned_cols=333 Identities=16% Similarity=0.209 Sum_probs=271.2
Q ss_pred ccccccccccc-cccccCCceEecC-CCCeeecCHHHHHHHHHHHhcc---CCEEEEeCCcCCHHHHHHHHHHHHHhCCC
Q psy11935 944 ADKGRFAYDGL-KRQRLLTPFVRNC-DGQLVATEWEDALIAVAQKLQT---SEVAGVVGSLADAEAMVALKDLLNKLGSE 1018 (1334)
Q Consensus 944 C~kgr~~~~~l-~~~Rl~~PliR~~-~g~~~~iSWdeAl~~ia~~L~~---~~i~~~~g~~~~~e~~~~~~~l~~~lGs~ 1018 (1334)
..--.|++.++ +++||++||+|.+ +|+|++|||||||+.||++|++ +++++++|++.++|..|++++|++.+|++
T Consensus 84 ~~l~~~~~~~l~~~~RL~~Pm~R~~g~g~~~~ISWdEAl~~IA~kL~~~~p~~i~~y~sg~~s~e~~~~~~~f~r~lGt~ 163 (743)
T TIGR01701 84 SELRTLDSHELEKLGRLTYPLSLRPGSDHYTPISWDDAYQEIAAKLNSLDPKQVAFYTSGRTSNEAAYLYQLFARSLGSN 163 (743)
T ss_pred HHHhcCCHHHhccCCCCCCCEEecCCCCCEEEccHHHHHHHHHHHHHhcCCCeEEEEecCCcchHHHHHHHHHHHHhCCC
Confidence 34456777788 6999999999974 5799999999999999999998 78999999999999999999999999999
Q ss_pred ccccCCCCCcchhhhhhhhhccC---CCCcccccccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCCCC---
Q psy11935 1019 DLYTEYAFPLEGAGTDLRANYLL---NNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDL--- 1092 (1334)
Q Consensus 1019 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~die~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~~~--- 1092 (1334)
|++..+++|+.+...++..++|. +.++.|+++||+||+||+||..++|.+..++++++ ++|+|||||||+.+.
T Consensus 164 n~~~~s~~C~~~~~~al~~~~G~~~~t~~~~Di~~ad~Il~~G~Np~~~~p~~~~~l~~a~-~rGakiIvIdP~~~~~l~ 242 (743)
T TIGR01701 164 NLPDCSNMCHEPSSVALKRSIGIGKGSVNLEDFEHTDCLVFIGSNAGTNHPRMLKYLYAAK-KRGAKIIAINPLRERGLE 242 (743)
T ss_pred CcCCCcccccchhhHHHHHhcCCCCCCCCHhHHHhCCEEEEEecCcccccHHHHHHHHHHH-HCCCEEEEECCCCccccc
Confidence 99988889987766666666553 45789999999999999999999999999999886 689999999997653
Q ss_pred ------------c---cccc------cCCCcHHHHHHHH-----------------------------------------
Q psy11935 1093 ------------R---YDYE------HLGESADLIKQLA----------------------------------------- 1110 (1334)
Q Consensus 1093 ------------t---~~~a------~~Gtd~a~l~~l~----------------------------------------- 1110 (1334)
| +..+ .||+|.+++.+|+
T Consensus 243 rf~~p~~~~~~~t~~~a~~Ad~~l~irPGtD~AL~~g~~~~li~~~~~~~~~~~D~~Fi~~~t~Gfe~l~~~v~~~t~e~ 322 (743)
T TIGR01701 243 RFWIPQIPESMLTGGGTQISSEYYQVRIGGDIALFNGVMKLLIEAEDAQPGSLIDHEFIANHTNGFDELRRHVLQLNWND 322 (743)
T ss_pred ccccccccchhccccchHhhCeeecCCCCcHHHHHHHHHHHHHHCCCccccccccHHHHHHhcchHHHHHHHHHhCCHHH
Confidence 1 3333 3999999876553
Q ss_pred ---------hcHHHHHHHHhcCCCcEEEEcCCc---ccHHHHHHHHHHH---HHhhcCCCCCCCCCcccccchhhhhhhh
Q psy11935 1111 ---------SGSHPFSKKLSAAKKPLIVVGADI---SDGAAVLALVQQL---AAKVTCESDVPCDWKVLNILQKAASQVA 1175 (1334)
Q Consensus 1111 ---------~g~~~~A~~l~~a~~~~ii~G~~~---~~g~~~~~al~~l---~~~~g~~Gg~~~~~~~~~~l~~~~n~~G 1175 (1334)
+.|+++|+.|+.+++++|++|+|+ .+|...++++.+| .|++|++|++ +.+++++.|.+|
T Consensus 323 ~~~~tGv~~~~I~~~A~~~a~a~~~~i~~g~G~~q~~~g~~~~~ai~~L~~L~GniG~~G~G------~~~~~g~~n~qG 396 (743)
T TIGR01701 323 IERSSGLSQEEILEFAKLLANSRRVVFCWAMGLTQHAHGVDNISQVANLALLRGNIGKPGAG------VCPIRGHSNVQG 396 (743)
T ss_pred HHHHHCcCHHHHHHHHHHHHhCCCEEEEECccccccchHHHHHHHHHHHHHHhCCCCCCCCC------cCCCCCCCCCCC
Confidence 114578999999999999999998 6777777665554 5666666642 333444444444
Q ss_pred hhhcCC----------------------Ccc------hhhHhcCCCcEEEEECCChhh------hHHhhcCCCceEEEEc
Q psy11935 1176 ALDIGY----------------------KPG------TSAIREKPPKVLFLLGADEGS------ISRDDVGKDCFIIYQG 1221 (1334)
Q Consensus 1176 ~~~~g~----------------------~pg------~~~i~~g~ik~l~~~g~np~~------~~~~al~k~~fvV~~d 1221 (1334)
..++|. .|| +++|..|++|++|++|+||+. .+.+||.+++|+|++|
T Consensus 397 ~~~~g~~~~~~~~~~~~l~~~~g~~~p~~~g~~~~~~~~a~~~g~ikal~~~ggNp~~~~Pd~~~~~~AL~kld~~V~~d 476 (743)
T TIGR01701 397 DRTMGITEKPEEEFLARLSQIYGFTPPDWPGDTTVAMIEAILTGKVRAFICLGGNFLEAMPDTAAIERALRQLDLRVHVA 476 (743)
T ss_pred CcccCCCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHhcCCceEEEEeCCChHhcCCCHHHHHHHHHcCCeEEEEe
Confidence 433332 122 346678999999999999964 3578999999999999
Q ss_pred CCCChhh---ccccEEecCCCCCCCCccc--------ccCCCceEEeccccCCCC-CcccHHHHHHHHHHHhcC
Q psy11935 1222 HHGDHGA---SIADAILPGAAYTEKQSTY--------VNTEGRAQQTLTAVTPPG-LAREDWKIIRALSEGVSS 1283 (1334)
Q Consensus 1222 ~~~~eta---~~ADvVLP~a~~~Ek~Gt~--------~n~egrvq~~~~av~P~g-ear~dw~Il~~La~~lg~ 1283 (1334)
+|+|+|+ .+||||||+++|+|++|++ .+.+++++..+++++|+| ++|+||+|++.||++||.
T Consensus 477 ~~lt~Ta~~a~~advVLP~~~~~E~~~~~~~~q~vt~~~s~~~v~~~~~~v~P~~~e~rsd~~I~~~LA~~lg~ 550 (743)
T TIGR01701 477 TKLNRSHVLAKEEALILPVLGRYEQDGQGTGKQAVSVESSMRMVHFSRGILKPRGAELRSEWAIIAEIAKALLP 550 (743)
T ss_pred CCcCcchhhhcCCeEEECCCCcccccCccCcccceeEEcCCceEEeecCcCCCCCcccCCHHHHHHHHHHHHCC
Confidence 9999997 5669999999999999874 466789999999999998 999999999999999983
No 55
>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyses the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor []. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E 3DMR_A 4DMR_A 1H5N_C 1E5V_A ....
Probab=100.00 E-value=5.7e-43 Score=427.61 Aligned_cols=323 Identities=27% Similarity=0.385 Sum_probs=241.0
Q ss_pred ccCCceEe---cCCCCeeecCHHHHHHHHHHHhcc-------CCEEE-EeCCcCCHHHHHHHHHHHHHhCCCccccCCCC
Q psy11935 958 RLLTPFVR---NCDGQLVATEWEDALIAVAQKLQT-------SEVAG-VVGSLADAEAMVALKDLLNKLGSEDLYTEYAF 1026 (1334)
Q Consensus 958 Rl~~PliR---~~~g~~~~iSWdeAl~~ia~~L~~-------~~i~~-~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~ 1026 (1334)
||++||+| .|+|+|++|||||||+.||++|++ ++|++ ..|+..+.+..+++++|++.+|++++......
T Consensus 1 Rl~~Pl~R~g~rg~~~~~~isWdeAl~~ia~~l~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 80 (432)
T PF00384_consen 1 RLKYPLKRVGERGDGKFVRISWDEALDEIAEKLKEIIDKYGPDSIAFFGSGGGTSNEEWYLLQRFARALGSPNTNNHGSQ 80 (432)
T ss_dssp B--S-EEEHCSTTSSSEEE--HHHHHHHHHHHHHHHHHHCTGGGEEEEEETTTSSHHHHHHHHHHHHHTTHHEEEEEEEG
T ss_pred CCCcceEccccCCCCCEEEccHHHHHHHhhhhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999 668999999999999999999998 56774 45567779999999999999999876665555
Q ss_pred Ccchhhh-------hhhhhccCCCCcccccccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCCCCcccccc-
Q psy11935 1027 PLEGAGT-------DLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEH- 1098 (1334)
Q Consensus 1027 ~~~~~~~-------~~~~~~~~~~~~~die~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~~~t~~~a~- 1098 (1334)
|....+. +....+.++.++.|+++||+||+||+||..++|+++.+++++++++|+|+|+|||+++.++..++
T Consensus 81 ~~~~~~~~~~~~g~~~~~~~~~~~~~~D~~~ad~il~~G~n~~~~~~~~~~~~~~~~~~~g~k~v~vdP~~t~~a~~ad~ 160 (432)
T PF00384_consen 81 CDTCMASAAEAFGGDFVGGPAFGNPLEDIENADVILIWGANPAESHPHLNARFRKAARKRGAKLVVVDPRRTPTAAKADE 160 (432)
T ss_dssp GGCTTHHHHHHHSSHSHTSSSCCSHHHGGGH-SEEEEES--HHHHSHHHHHHHHHHHHHCTSEEEEEESSB-HHGGGTSE
T ss_pred cccccchhhhheecccccCcccccccceeeccceEEEcccCccccccccccccccccccCCcceEEEEeccchhhhhccc
Confidence 5432211 11222334567789999999999999999999999888888777899999999999998877764
Q ss_pred -----CCCcHHHHHHHH--------------------------------------------hcHHHHHHHHhcCCC-cEE
Q psy11935 1099 -----LGESADLIKQLA--------------------------------------------SGSHPFSKKLSAAKK-PLI 1128 (1334)
Q Consensus 1099 -----~Gtd~a~l~~l~--------------------------------------------~g~~~~A~~l~~a~~-~~i 1128 (1334)
||||.+++.+++ +.+.++|+.++++++ +++
T Consensus 161 ~i~i~PGtD~al~~a~~~~ii~~~~~d~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~i~~~A~~~~~~~~~~~~ 240 (432)
T PF00384_consen 161 WIPIRPGTDAALALAMAHVIIDEGLYDKEFIEKYTYGFDYTNAPLLVYTDEDAAEICGVPAEKIRELAREYAKAAPKAAI 240 (432)
T ss_dssp EEEE-TTTHHHHHHHHHHHHHHTTTSTHHHHHHHEECHHHHHHHHTTTTTHHHHHHHTSHHHHHHHHHHHHHHSTS-EEE
T ss_pred cccccccccHHhhcccccceeeccccccchhhhhhhhhhhhhhhhhcccccccceEEEechhhcccccccccccccccch
Confidence 999999976653 125678999988876 888
Q ss_pred EEcCCc---ccHHHHHHHHHH---HHHhhcCCCCCCCCCcccccchhhhhhhhhh----------------------hcC
Q psy11935 1129 VVGADI---SDGAAVLALVQQ---LAAKVTCESDVPCDWKVLNILQKAASQVAAL----------------------DIG 1180 (1334)
Q Consensus 1129 i~G~~~---~~g~~~~~al~~---l~~~~g~~Gg~~~~~~~~~~l~~~~n~~G~~----------------------~~g 1180 (1334)
++|.+. .+|.++.+++.. |.|++|++||+...+.+...+.+.++..+.. ..+
T Consensus 241 ~~g~g~~~~~~g~~~~~a~~~L~~l~G~i~~~Ggg~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (432)
T PF00384_consen 241 IWGWGITRHSNGEQTARAIANLAALTGNIGKPGGGIFPLGGPPNVPGYANPVGPLPVDPPADGFPYGKPKFWKEGPGNLK 320 (432)
T ss_dssp EESHHHHSSTTHHHHHHHHHHHHHHHTTTTSTTBEEEEESSSTTHTTTHHHTTSSTTEECTTEETCHHHHHHCGHTTHSC
T ss_pred hhhhhhhhhhhhhhhhhHHHHHHhhhcceeecccccccccccccccccccccccccccccccchhhhhhhhhccCccccc
Confidence 999887 667776665544 5566667765322222111122222222221 122
Q ss_pred CCcc------hhhHhcCCCcEEEEECCChhhh------HHhhcCCCceEEEEcCCCChhhccccEEecCCCCCCCCcccc
Q psy11935 1181 YKPG------TSAIREKPPKVLFLLGADEGSI------SRDDVGKDCFIIYQGHHGDHGASIADAILPGAAYTEKQSTYV 1248 (1334)
Q Consensus 1181 ~~pg------~~~i~~g~ik~l~~~g~np~~~------~~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~Gt~~ 1248 (1334)
..|+ ...+..++++++|++|.||... ..+++.+++|+|++|+|+|+|+.+||||||+++|+|++|+++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~np~~~~~~~~~~~~al~k~~~~V~~d~~~teta~~ADiiLP~~~~~E~~~~~~ 400 (432)
T PF00384_consen 321 FPPGNDFVEAINAIEDGKIKALFVLGGNPAQSFPDSNKVIEALKKLDFVVVIDPFMTETAKYADIILPAATWLEREDTVV 400 (432)
T ss_dssp SSSTTEHHHHHHHHHTTSSSEEEEESCSHHHHSSSHHHHHHHHTTTSEEEEEESSCTHHHHTSSEEEEBE-GGGSEEEEE
T ss_pred hhhhhhhhhhhhhccccceeeeeccccceeeecccchhhhhhcccccceecccccchhhcchhheecccCCccccCCccc
Confidence 2333 2345678999999999999642 467899999999999999999999999999999999999999
Q ss_pred cCCCceEEeccccCCCCCcccHHHHHHHHHHH
Q psy11935 1249 NTEGRAQQTLTAVTPPGLAREDWKIIRALSEG 1280 (1334)
Q Consensus 1249 n~egrvq~~~~av~P~gear~dw~Il~~La~~ 1280 (1334)
|.+|+++..+|+|+|+||+|+||+|+.+||+|
T Consensus 401 ~~~~~~~~~~~~v~p~ge~~~d~~I~~~la~r 432 (432)
T PF00384_consen 401 NAEGRVQRRNPVVEPPGEARSDWEIFRELAKR 432 (432)
T ss_dssp ETTSEEEEEEESSC-STT-BEHHHHHHHHHHH
T ss_pred CCcCchhhcccccCCCccCChHHHHHHHHhcC
Confidence 99999999999999999999999999999986
No 56
>PRK15102 trimethylamine N-oxide reductase I catalytic subunit; Provisional
Probab=100.00 E-value=8.4e-42 Score=444.00 Aligned_cols=360 Identities=18% Similarity=0.215 Sum_probs=238.5
Q ss_pred CceEEEeeCCEEEEecCCCCCCCCccccccccccccccc-cccccCCceEec--------------CCCCeeecCHHHHH
Q psy11935 916 SNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGL-KRQRLLTPFVRN--------------CDGQLVATEWEDAL 980 (1334)
Q Consensus 916 C~i~v~v~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l-~~~Rl~~PliR~--------------~~g~~~~iSWdeAl 980 (1334)
|++.++|+||+|++|.|+++++... .|.+| ..+.+ +|+||++||+|+ |+|+|++|||||||
T Consensus 51 ~~l~~~V~dG~vv~v~g~~~~~~~~--~~~~~--~~~~~y~pdRl~~PlkR~~~~~~~~~~~~g~RG~g~f~~ISWDEAl 126 (825)
T PRK15102 51 GAFRAKVKNGRFVEAKPFELDKYPT--KMING--IKGHVYNPSRIRYPMVRLDWLRKRHKSDTSQRGDNRFVRVSWDEAL 126 (825)
T ss_pred CceEEEEECCEEEEEecCCCCcCcc--hHHhc--hhhhccChhhccCCceechhhhccCCCCcccCCCCcEEEecHHHHH
Confidence 4699999999999999976543222 15555 44456 699999999996 26899999999999
Q ss_pred HHHHHHhcc-------CCEEEE-eCCcCCHHHHHHHHHHHHHhCCC--ccccCCCCCcchhhhhhhh------hccCCCC
Q psy11935 981 IAVAQKLQT-------SEVAGV-VGSLADAEAMVALKDLLNKLGSE--DLYTEYAFPLEGAGTDLRA------NYLLNNK 1044 (1334)
Q Consensus 981 ~~ia~~L~~-------~~i~~~-~g~~~~~e~~~~~~~l~~~lGs~--~~~~~~~~~~~~~~~~~~~------~~~~~~~ 1044 (1334)
+.||++|++ ++|+.. .+...+.........|++.+|+. .+....++|.......... .|+...+
T Consensus 127 d~IA~kl~~i~~~~G~~ai~~g~~~~~~~g~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~ 206 (825)
T PRK15102 127 DLFYEELERVQKTYGPSALHTGQTGWQSTGQFHSATGHMQRAIGMHGNSVGTVGDYSTGAGQVILPYVLGSTEVYEQGTS 206 (825)
T ss_pred HHHHHHHHHHHHhhCcHhhcccccccccCCccCchHHHHHHHHhhcCCCcCCCCCcCHHHHhhhhheEecchhhccCCCC
Confidence 999999988 344211 11111111112233566666642 2323334554321111111 2222233
Q ss_pred c-ccccccCeEEEEcCCccccc---------hhHH--HHHHHHHhhCCCeEEEEccCCCCccccc-------cCCCcHHH
Q psy11935 1045 I-AGAEEADLILLIGTNPRFEA---------PLFN--ARIRKGYLTNELDVAYIGPKVDLRYDYE-------HLGESADL 1105 (1334)
Q Consensus 1045 ~-~die~ad~Il~~G~np~~~~---------p~~~--~rir~a~~~~g~kiivIdp~~~~t~~~a-------~~Gtd~a~ 1105 (1334)
+ .|+++||+||+||+||.+++ |... .+++++.+++|+||||||||++.|+..+ .||||.+|
T Consensus 207 ~~~~~~~a~~ii~wG~Np~~s~~~~~~~~~~p~~~~~~~~~~~~~~~gaklIvIDPr~t~tA~~a~~~~l~irPGTD~AL 286 (825)
T PRK15102 207 WPLILENSKTIVLWGSDPVKNLQVGWNCETHESYAYLAQLKEKVAKGEINVISIDPVVTKTQNYLGCEHLYVNPQTDVPL 286 (825)
T ss_pred cHHHHHhCCEEEEECCChHHhccCccccCCCcHHHHHHHHHHHhhcCCCEEEEECCCCCchhhhccCceecccCCcHHHH
Confidence 3 35799999999999998764 4322 2344443334799999999999998752 29999999
Q ss_pred HHHHH------------------h--------------------------------cHHHHHHHHhcCCCcEEEEcCCc-
Q psy11935 1106 IKQLA------------------S--------------------------------GSHPFSKKLSAAKKPLIVVGADI- 1134 (1334)
Q Consensus 1106 l~~l~------------------~--------------------------------g~~~~A~~l~~a~~~~ii~G~~~- 1134 (1334)
+.+|+ . .|+++|+.|+.+ +++|++|++.
T Consensus 287 ~lam~~~ii~e~l~D~~Fv~~~t~Gfd~~~~~l~g~~dg~~~tpe~aa~itGV~ae~I~~lA~~~a~~-~~~i~~g~g~~ 365 (825)
T PRK15102 287 MLALAHTLYSENLYDKKFIDNYCLGFEQFLPYLLGEKDGVPKTPEWAEKICGIDAETIRELARQMAKG-RTQIIAGWCIQ 365 (825)
T ss_pred HHHHHHHHHHCCcccHHHHHHHccCHHHHHHHhcccccCCcCCHHHHHHHHCcCHHHHHHHHHHHHhc-CCEEEEeechh
Confidence 77654 1 146789999884 5667777776
Q ss_pred --ccHHHHH---HHHHHHHHhhcCCCCCCC-CC--c--ccc--------cch----hhhhhhh-hhh----cCCCcc---
Q psy11935 1135 --SDGAAVL---ALVQQLAAKVTCESDVPC-DW--K--VLN--------ILQ----KAASQVA-ALD----IGYKPG--- 1184 (1334)
Q Consensus 1135 --~~g~~~~---~al~~l~~~~g~~Gg~~~-~~--~--~~~--------~l~----~~~n~~G-~~~----~g~~pg--- 1184 (1334)
.+|.... .+|..|+|++|++||+.. .+ + +.. .++ ...+... ... .+..|.
T Consensus 366 ~~~~g~~~~rai~~L~altGnig~pGgg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 445 (825)
T PRK15102 366 RQQHGEQPYWMGAVLAAMLGQIGLPGGGISYGHHYSGIGVPSSGGAIPGGFPGNLDTGQKPKHDNSDYKGYSSTIPVARF 445 (825)
T ss_pred hhhhhHHHHHHHHHHHHHhccCCCCCCccccccccCCCCCCCcccccccCccccCCcccCccccccccccccccccHHHH
Confidence 4555444 446666777888876421 00 0 000 000 0000000 000 000111
Q ss_pred hhhHhc--------------CCCcEEEEECCChhh------hHHhhcCCCceEEEEcCCCChhhccccEEecCCCCCCCC
Q psy11935 1185 TSAIRE--------------KPPKVLFLLGADEGS------ISRDDVGKDCFIIYQGHHGDHGASIADAILPGAAYTEKQ 1244 (1334)
Q Consensus 1185 ~~~i~~--------------g~ik~l~~~g~np~~------~~~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~ 1244 (1334)
.+++.. +++|++|++|+||+. .+.++|++++|+|++|+|+|+||.|||||||+++|+|++
T Consensus 446 ~~~i~~~g~~~~~~g~~~~~~~ik~l~v~g~Np~~s~p~~~~~~~al~~ldf~Vv~D~~~teTa~~ADiVLPaa~~~E~~ 525 (825)
T PRK15102 446 IDAILEPGKTINWNGKKVTLPPLKMMIFSGTNPWHRHQDRNRMKEAFRKLETVVAIDNQWTATCRFADIVLPACTQFERN 525 (825)
T ss_pred HHHHhcCCceeccCCCcccCCCeEEEEECCCCHHHcCcCHHHHHHHhcCCCEEEEecCccCchHhhCCEEeecCcccccC
Confidence 122221 369999999999965 257899999999999999999999999999999999998
Q ss_pred c-----ccccCCCceEEeccccCCCCCcccHHHHHHHHHHHhc
Q psy11935 1245 S-----TYVNTEGRAQQTLTAVTPPGLAREDWKIIRALSEGVS 1282 (1334)
Q Consensus 1245 G-----t~~n~egrvq~~~~av~P~gear~dw~Il~~La~~lg 1282 (1334)
+ ++.+ ++++..+|+|+|+|++|+||+|+++||++||
T Consensus 526 d~~~~g~~~~--~~~~~~~~~v~P~gear~d~~I~~~LA~rlG 566 (825)
T PRK15102 526 DIDQYGSYSN--RGIIAMKKVVEPLFESRSDFDIFRELCRRFG 566 (825)
T ss_pred cccccccccc--cceeeeeeccCCcccccCHHHHHHHHHHHhC
Confidence 4 4443 5799999999999999999999999999999
No 57
>KOG0996|consensus
Probab=100.00 E-value=1.2e-36 Score=368.34 Aligned_cols=398 Identities=13% Similarity=0.156 Sum_probs=288.5
Q ss_pred HHHHHHhHhhh---HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 42 LLAKSASIKTE---LREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQLDSAELTLHRE 118 (1334)
Q Consensus 42 l~~~ie~l~~~---~~er~~~~~~~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 118 (1334)
+..+...++.+ .+|.++++.+.+..++.+++....++..++...+.. ...+.+ .+.++.++...+...+.++.+.
T Consensus 389 ~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~-~~~i~~-~~~ei~~L~~~~~~~~~~l~e~ 466 (1293)
T KOG0996|consen 389 LKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKA-RIEIQK-CQTEIEQLEELLEKEERELDEI 466 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhh-HhHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444 777888888888888888887777777776666555 555555 5555555555555555555444
Q ss_pred H-------HHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 119 F-------QQKEKTIVENAAKQLKQISENEFKQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAEL 191 (1334)
Q Consensus 119 ~-------~~~~~~i~~~~~~~ie~~~~~~~l~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l 191 (1334)
. ..+.+++.....+....+.+....+.++...+.++. -+..+.+.......+++..|......+.+....+
T Consensus 467 ~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~--~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l 544 (1293)
T KOG0996|consen 467 LDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELD--ILLSRHETGLKKVEELKGKLLASSESLKEKKTEL 544 (1293)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 456666777777766666666666777777777777 6666666777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH-------HHHHhccCCCCCCcccccccc
Q psy11935 192 TQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQAIHMITSDVTHLHT-------SKESLATRQPSEQSLIDSTTD 264 (1334)
Q Consensus 192 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~srl~~-------Vk~vL~~~~~~~~~gI~G~Va 264 (1334)
..+...|..++.++.+..+.+..+.++...+ .++++.+++++..+++.+.. ..++++.+..++++|++|-+|
T Consensus 545 ~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~-~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~kesG~i~Gf~GRLG 623 (1293)
T KOG0996|consen 545 DDLKEELPSLKQELKEKEKELPKLRKEERNL-KSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLKESGRIPGFYGRLG 623 (1293)
T ss_pred HHHHHhhhhHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCCCCccccccc
Confidence 7777777777777777777777777777777 67777776666666654444 666666666556999999999
Q ss_pred ccccccccccc-----cccccccccCCCcChHHHHHHhhhcCCCccceechhhhh---ccCccchhccCCeEeeeccccc
Q psy11935 265 TNCPVTQQYVP-----SSNQQYAPSSNQQYSIPTSNINQQYSMFSADSTHMNIVE---RDIPNSADDMRKYIEMQYSMFS 336 (1334)
Q Consensus 265 eli~Vp~~Y~~-----G~alQnIVv~~e~~Ak~aI~~LK~~~~GRaTFLPl~~Ik---r~l~~~~~~~~G~iG~A~dLV~ 336 (1334)
||=.+|++|.. |+++-+|||++..+|..+|+||+++++|||||.|||-|+ +.+.. -..|-=+--..|||+
T Consensus 624 DLg~Id~kYDvAIsTac~~LdyiVVdt~e~aq~cI~fl~~~nLgraTFi~LDki~~~~~~l~~--i~tpenvPRLfDLv~ 701 (1293)
T KOG0996|consen 624 DLGAIDEKYDVAISTACARLDYIVVDTIETAQECINFLKKNNLGRATFIILDKIKDHQKKLAP--ITTPENVPRLFDLVK 701 (1293)
T ss_pred cccccchHHHHHHHHhccccceEEeccHHHHHHHHHHHHHcCCCceeEEehHhhhhhhhccCC--CCCCCCcchHhhhhc
Confidence 99999999999 999999999999999999999999999999999999999 23211 122223334569999
Q ss_pred cc-hhhhHHHHhhhhch--hhhHHHHHHHHhhCCCCCceEecccccccCCCCcccccccCCCCCcccch--------hhH
Q psy11935 337 AD-STHMNIVERDIPNS--ADDMRKYIEMLLEKPPGNPVSDLEAEVKDSAGPMTSFLESSVTSDIFNEP--------ALY 405 (1334)
Q Consensus 337 ~d-~~~~~Ii~~LLG~t--~e~ld~A~~iak~~~~r~RIVTLdGdvin~GGSiTGGs~~~~~~~ll~Rk--------~ei 405 (1334)
|. ++|++.|-+.|+.| ++||+.|.+||...+.|+|||||+|.+|+++|+||||..+- ..|=.+++ ...
T Consensus 702 ~~d~~~r~aFYfaLrdtLV~d~LeQAtRiaygk~rr~RVvTL~G~lIe~SGtmtGGG~~v-~~g~mg~~~~~t~~s~~~v 780 (1293)
T KOG0996|consen 702 CKDEKFRPAFYFALRDTLVADNLEQATRIAYGKDRRWRVVTLDGSLIEKSGTMTGGGKKV-KGGRMGTSIRVTGVSKESV 780 (1293)
T ss_pred cCCHHHHHHHHHHHhhhhhhcCHHHHHHHhhcCCCceEEEEecceeecccccccCCCCcC-CCCCCCCccccCCCCHHHH
Confidence 96 99999999999999 99999999999999999999999999999999999997421 11112222 255
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 406 TKTVRSVTLKISKEKIESLERNLQTETQRSRKLEEELQDTRQTC 449 (1334)
Q Consensus 406 ~~L~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~ 449 (1334)
+++..++ ..+......+..++.++...+.++......+...+
T Consensus 781 ~~le~~l--~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l 822 (1293)
T KOG0996|consen 781 EKLERAL--SKMSDKARQHQEQLHELEERVRKLRERIPELENRL 822 (1293)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHH
Confidence 6666666 66655555555555555555555555544444433
No 58
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=100.00 E-value=5.4e-40 Score=354.42 Aligned_cols=173 Identities=31% Similarity=0.603 Sum_probs=152.5
Q ss_pred CCcEEEEECCEEEEe-CCCCcchh------------------------------------hhhhhcCCCCCCCEEEcCCH
Q psy11935 662 NEKFEVFIDDKKVMV-DPGTTVLQ------------------------------------PVAACAMPVMKGWRVKTNSE 704 (1334)
Q Consensus 662 ~~~~~~~idg~~~~v-~~g~til~------------------------------------~~~ac~~~~~~gm~v~t~s~ 704 (1334)
...|+|+|||++|+| |+|+|||+ +++||+|||.+||+|.|+||
T Consensus 66 ~~~~~I~IDGk~VeV~~~G~TILeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEVeG~~~lv~AC~tpV~eGM~V~T~Se 145 (297)
T PTZ00305 66 KPRAIMFVNKRPVEIIPQEENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQVDGTQNLVVSCATVALPGMSIITDSR 145 (297)
T ss_pred CCceEEEECCEEEEecCCCChHHHHHHHcCCCcCccccCCCCCCCCccceeEEEECCCcCcccccCCcCCCCCEEEeCCH
Confidence 446999999999999 99999999 78999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCCCCCCchhhhHHHhCCCCCcccccccCCCCCccchhhhhhccCCCCcccccceee
Q psy11935 705 MTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFTDIDFSGKSGTYTRVTRQRSWGLIPSRVFLQSIN 784 (1334)
Q Consensus 705 ~~~~~r~~~~~~ll~~hp~~C~~c~~~g~c~lq~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~lc~~~~v~ 784 (1334)
+|.++|+.+|||||.|||+|||+|+++|+|+||++++.||+...||.. .++ .++
T Consensus 146 ~v~~~Rk~vLElLLs~Hp~DC~~C~k~G~CeLQdla~~~Gv~~~Rf~~----~~~----------------------~~~ 199 (297)
T PTZ00305 146 LVRDAREGNVELILINHPNDCPICEQATNCDLQNVSMNYGTDIPRYKE----DKR----------------------AVQ 199 (297)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCcccCcCCcHHHHHHHHhCCCCccCCc----ccc----------------------ccc
Confidence 999999999999999999999999999999999999999999888864 232 122
Q ss_pred cCCCcccccccccCCCCcEEEcCCHHHHHHHHHHHHHHhhCCCCCCcccccCCccchhhhhcccCccccccCCCCCceec
Q psy11935 785 RHWIGPVAACAMPVMKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGNDLGTTGRGSDMQVG 864 (1334)
Q Consensus 785 ~~~~~~~~aC~~~v~~gm~i~t~s~~~r~~r~~~~~~ll~~h~~~C~~C~~~g~c~~~~~e~~g~~~~~~~~rg~~~~i~ 864 (1334)
+....|+ |.. +++|| |.|+|| ||+|.+++|..+|+|.+||.++.|+
T Consensus 200 ~~~~~p~------------i~~--D~nKC--------------IlCgRC------VRaC~EVqg~~aL~~~~RG~~t~I~ 245 (297)
T PTZ00305 200 DFYFDPQ------------TRV--VLNRC--------------IHCTRC------VRFLNEHAQDFNLGMIGRGGLSEIS 245 (297)
T ss_pred ccCCCCc------------eee--cCCcC--------------cCccHH------HHHHHHhhCCcEEEEeecCCCCEEe
Confidence 2234566 666 78999 999999 9999999999999999999999999
Q ss_pred ccccccccccc--ccccccccccccccccCCcc
Q psy11935 865 TYVEKLFLSEL--SGNVIDLCPVGALTSKPYSF 895 (1334)
Q Consensus 865 ~~~~~~~~~~~--cg~cv~~CpvGAl~~k~~~~ 895 (1334)
++.+.++ |.+ ||+|+++||||||++++.+.
T Consensus 246 t~~d~~~-~~~~~~g~cvdvCPvGAL~~~d~~~ 277 (297)
T PTZ00305 246 TFLDELE-VKTDNNMPVSQLCPVGKLYLGDADE 277 (297)
T ss_pred ecCCCcc-cccCCCCceeeECCCcccccCCccc
Confidence 9988654 544 56699999999999998754
No 59
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=100.00 E-value=2e-35 Score=318.82 Aligned_cols=353 Identities=20% Similarity=0.255 Sum_probs=279.0
Q ss_pred eeeeecccCCCCC-ceEEEeeCCEEEEecCCCCCCCCccccccccccccccc-cccccCCceEecCCCCeeecCHHHHHH
Q psy11935 904 KTESVDVLDAVGS-NIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGL-KRQRLLTPFVRNCDGQLVATEWEDALI 981 (1334)
Q Consensus 904 ~~~s~c~~C~~gC-~i~v~v~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l-~~~Rl~~PliR~~~g~~~~iSWdeAl~ 981 (1334)
...-+|++|+.-| .|.|.+.+|+| ++. ..|-.|.+-|... +++|++.||++. +|+|+++|||||++
T Consensus 3 ~k~~vCp~CG~lCDDI~v~~e~~~i-~~~----------naCr~G~akF~~~~~~~R~~~p~ik~-~g~~k~v~~deAie 70 (429)
T COG1029 3 IKNVVCPFCGTLCDDIEVEVEDGKI-EVR----------NACRIGNAKFKEAFSDHRIKAPMIKD-DGELKPVDYDEAIE 70 (429)
T ss_pred eeeEEcCcccccccceEEEecCCee-eeh----------hHHhhhHHHHhhhcccccccCceEec-CCceeeccHHHHHH
Confidence 3456899999999 69999999988 554 2699999888877 799999999998 59999999999999
Q ss_pred HHHHHhcc-CCEEEEeCCcCCHHHHHHHHHHHHHhCCCccccCCCCCcchhhhhhhhhccCCCCcccc-cccCeEEEEcC
Q psy11935 982 AVAQKLQT-SEVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGA-EEADLILLIGT 1059 (1334)
Q Consensus 982 ~ia~~L~~-~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di-e~ad~Il~~G~ 1059 (1334)
.+|+.|.. .+...|+++.+++|...+.-++...+|+ .+|...++|+++...++......+.++.++ .+||+|+.||+
T Consensus 71 ~Aa~ILv~aKrPllyg~s~tscEA~~~gielaE~~ga-viD~~asvchGp~~~alqe~g~p~~TlgevKNraDviVyWGt 149 (429)
T COG1029 71 KAAEILVNAKRPLLYGWSSTSCEAQELGIELAEKLGA-VIDSNASVCHGPSVLALQEAGKPTATLGEVKNRADVIVYWGT 149 (429)
T ss_pred HHHHHHHhccCceEeccccchHHHHHHHHHHHHHhCc-EecCCCccccchHHHHHHhcCCcccchhhhcccccEEEEeCC
Confidence 99999998 6677778888889998888899999998 588888999988777777666567888898 78999999999
Q ss_pred CccccchhHHHHHHH----HHhhC---CCeEEEEccCCCCcccccc------CCCcHHHHHHHH---h-----------c
Q psy11935 1060 NPRFEAPLFNARIRK----GYLTN---ELDVAYIGPKVDLRYDYEH------LGESADLIKQLA---S-----------G 1112 (1334)
Q Consensus 1060 np~~~~p~~~~rir~----a~~~~---g~kiivIdp~~~~t~~~a~------~Gtd~a~l~~l~---~-----------g 1112 (1334)
||.++||....|+.- .++.+ +-.+|+||||.+.|+..++ ||+|..++.++. . |
T Consensus 150 NP~~shPRhmSRYs~f~RG~~~~rGr~dRtvIvVD~RkT~TAklad~~~qi~p~sDyelisAl~~~l~G~~~~~~eev~g 229 (429)
T COG1029 150 NPMHSHPRHMSRYSVFPRGFFRPRGREDRTVIVVDPRKTATAKLADNHVQIKPNSDYELISALRAALHGKEPHRSEEVAG 229 (429)
T ss_pred CcccccchhhhhcccccccccccCCcccceEEEEecCcCchhhhhhheEecCCCCcHHHHHHHHHHhcCCCCCCchhhcC
Confidence 999999987776422 22223 4589999999999987764 999999988874 1 2
Q ss_pred -----HHHHHHHHhcCCCcEEEEcCCc--c-----cHHHHHHHHHHHHHhhcCCCCCCCCCcccccchhhhhhhh-----
Q psy11935 1113 -----SHPFSKKLSAAKKPLIVVGADI--S-----DGAAVLALVQQLAAKVTCESDVPCDWKVLNILQKAASQVA----- 1175 (1334)
Q Consensus 1113 -----~~~~A~~l~~a~~~~ii~G~~~--~-----~g~~~~~al~~l~~~~g~~Gg~~~~~~~~~~l~~~~n~~G----- 1175 (1334)
+.++|..++.|+-.+|++|.|+ + +...++.++..|..... | .+.+++++.|..|
T Consensus 230 vp~~~i~e~a~~mKna~Fg~if~GlGlt~S~gk~rN~e~a~~Lv~~LNe~ak--------~-tli~mrgH~Nv~GFnqv~ 300 (429)
T COG1029 230 VPIEEIEELADMMKNAKFGAIFVGLGLTSSRGKHRNVENAINLVKDLNEYAK--------F-TLIPMRGHYNVTGFNEVL 300 (429)
T ss_pred CCHHHHHHHHHHHhcCCcceEEEeeceeecccccccHHHHHHHHHHHhhhce--------E-EEEEeccccccccccchh
Confidence 5789999999999999999998 2 23333333333332211 1 1222333333222
Q ss_pred hhhcC-------------CCcc----hhhHhcCCCcEEEEECCChhhhH----HhhcCCCceEEEEcCCCChhhccccEE
Q psy11935 1176 ALDIG-------------YKPG----TSAIREKPPKVLFLLGADEGSIS----RDDVGKDCFIIYQGHHGDHGASIADAI 1234 (1334)
Q Consensus 1176 ~~~~g-------------~~pg----~~~i~~g~ik~l~~~g~np~~~~----~~al~k~~fvV~~d~~~~eta~~ADvV 1234 (1334)
.+..| +.|| .+.+...++++.+++|+||+.+. .+-|.+++ +|++|+|++.|+..||||
T Consensus 301 ~~e~GYpf~vdF~rG~prynPgE~s~vdlL~~k~vDAalvi~sDp~ah~P~~~~~~l~eIP-vI~iDp~~~pTt~vadVv 379 (429)
T COG1029 301 SWETGYPFAVDFSRGYPRYNPGEFSAVDLLKRKEVDAALVIASDPGAHFPRDAVEHLAEIP-VICIDPHPTPTTEVADVV 379 (429)
T ss_pred hhhhCCceeeecccCCcCCCcccccHHHHHhccCCCeEEEEecCccccChHHHHHHhhcCC-EEEecCCCCcchhhccee
Confidence 23233 3454 34566788999999999997542 34467777 899999999999999999
Q ss_pred ecCCC-CCCCCcccccCCCceEEeccccCCCCCcccHHHHHHHHHHHh
Q psy11935 1235 LPGAA-YTEKQSTYVNTEGRAQQTLTAVTPPGLAREDWKIIRALSEGV 1281 (1334)
Q Consensus 1235 LP~a~-~~Ek~Gt~~n~egrvq~~~~av~P~gear~dw~Il~~La~~l 1281 (1334)
+|++- ..|.+||++..+|...+++|++++ ...+|-+||..|-+++
T Consensus 380 iP~aI~gmE~~GTayRmD~V~v~~k~~~es--~~~sde~iLk~l~ekv 425 (429)
T COG1029 380 IPSAIDGMEAEGTAYRMDGVPVRMKPVVES--KTLSDEEILKKLLEKV 425 (429)
T ss_pred cccceeeeeccceEEeecCceEeeEecccc--cccChHHHHHHHHHHH
Confidence 99985 679999999999999999999998 6799999999998875
No 60
>KOG0964|consensus
Probab=100.00 E-value=1.9e-30 Score=308.01 Aligned_cols=381 Identities=12% Similarity=0.093 Sum_probs=219.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHH
Q psy11935 53 LREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQLDSAELTLHREF---------QQKE 123 (1334)
Q Consensus 53 ~~er~~~~~~~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~---------~~~~ 123 (1334)
+++++....+........++.++.++...+.++... .-.++. +..+-......|..++.....+- ...+
T Consensus 312 lq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I-~Pky~~-l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~ 389 (1200)
T KOG0964|consen 312 LQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKI-EPKYNS-LVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKE 389 (1200)
T ss_pred HHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh-hhHHHH-HHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHH
Confidence 444454444444445555555555555555555444 444444 44433444444443333322221 0001
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 124 KTIVENAAKQLKQISENEFKQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNH 203 (1334)
Q Consensus 124 ~~i~~~~~~~ie~~~~~~~l~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~~~l~~l~~ 203 (1334)
+.-.=.++++.++..-+.+.+.....+...+. ......+...+++.++...+.+...++.++-.+.....++++++..
T Consensus 390 eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~--~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~ 467 (1200)
T KOG0964|consen 390 ERDKWIRSEIEKLKRGINDTKEQENILQKEIE--DLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQD 467 (1200)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11111233333333333333333333333333 3333333333444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH-----HHHHhccCCCCCCccccccccccccccccccc---
Q psy11935 204 LLKEESKKRELMAKKVESVMQSQLQQAIHMITSDVTHLHT-----SKESLATRQPSEQSLIDSTTDTNCPVTQQYVP--- 275 (1334)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~srl~~-----Vk~vL~~~~~~~~~gI~G~Vaeli~Vp~~Y~~--- 275 (1334)
..+.+=.+-..++..+..+ ...+....+.+..+.+|-=. |+.|...-. .+|++|+|.|||+||++|-+
T Consensus 468 ~Rk~lWREE~~l~~~i~~~-~~dl~~~~~~L~~~~~r~v~nGi~~v~~I~e~~k---~ngv~G~v~eL~~v~~~f~tavE 543 (1200)
T KOG0964|consen 468 KRKELWREEKKLRSLIANL-EEDLSRAEKNLRATMNRSVANGIDSVRKIKEELK---PNGVFGTVYELIKVPNKFKTAVE 543 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccchhhhhhHHHHHHHHHhc---ccccceehhhhhcCCHHHHhHHh
Confidence 4444444444445555555 55555555555555443322 666664432 67999999999999999999
Q ss_pred ---cccccccccCCCcChHHHHHHhhhcCCCccceechhhhh-ccCccchhccCCeEeeeccccccchhhhHHHHhhhhc
Q psy11935 276 ---SSNQQYAPSSNQQYSIPTSNINQQYSMFSADSTHMNIVE-RDIPNSADDMRKYIEMQYSMFSADSTHMNIVERDIPN 351 (1334)
Q Consensus 276 ---G~alQnIVv~~e~~Ak~aI~~LK~~~~GRaTFLPl~~Ik-r~l~~~~~~~~G~iG~A~dLV~~d~~~~~Ii~~LLG~ 351 (1334)
|.++=||||+++..|-+.++.+.+.++||+||+||+-|+ |... ..+.+..+- ..+.++|+++|..++.+..|+
T Consensus 544 vtaGNsLF~iVVdndevATkIl~~~n~m~~GrVTF~PLNrl~~r~v~--yp~~sdaiP-li~kl~y~p~fdka~k~Vfgk 620 (1200)
T KOG0964|consen 544 VTAGNSLFNIVVDNDEVATKILRKLNKMKGGRVTFMPLNRLKARDVE--YPKDSDAIP-LISKLRYEPQFDKALKHVFGK 620 (1200)
T ss_pred hhcccceEEEEecccHHHHHHHHHHHhccCCeeEEeecccCchhhcc--CCCCCCccc-hHHHhCcchhhHHHHHHHhCc
Confidence 999999999999999999999999999999999999999 7543 001111122 225589999999999999999
Q ss_pred h--hhhHHHHHHHHhhCCCCCceEecccccccCCCCcccccccCCCCCcccchhhHHHHHHHhhHHhHHHHHHHHHHHHH
Q psy11935 352 S--ADDMRKYIEMLLEKPPGNPVSDLEAEVKDSAGPMTSFLESSVTSDIFNEPALYTKTVRSVTLKISKEKIESLERNLQ 429 (1334)
Q Consensus 352 t--~e~ld~A~~iak~~~~r~RIVTLdGdvin~GGSiTGGs~~~~~~~ll~Rk~ei~~L~~~~~~~~~~~~~~~l~~~~~ 429 (1334)
| |-||+.|+..||+ |.+-.|||+||.+.--|.||||+.-.+.+-|=. -....+...++ .++++.+..+...+.
T Consensus 621 tivcrdl~qa~~~ak~--~~ln~ITl~GDqvskkG~lTgGy~D~krsrLe~-~k~~~~~~~~~--~~l~~~L~~~r~~i~ 695 (1200)
T KOG0964|consen 621 TIVCRDLEQALRLAKK--HELNCITLSGDQVSKKGVLTGGYEDQKRSRLEL-LKNVNESRSEL--KELQESLDEVRNEIE 695 (1200)
T ss_pred eEEeccHHHHHHHHHh--cCCCeEEeccceecccCCccccchhhhhhHHHH-HhhhHHHHHHH--HHHHHHHHHHHHHHH
Confidence 9 9999999999995 678999999999999999999995333332111 11122223344 444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11935 430 TETQRSRKLEEELQDTRQTC 449 (1334)
Q Consensus 430 ~l~~~~~~l~~~l~~~~~~~ 449 (1334)
...+++.++..+++.....+
T Consensus 696 ~~~~~i~q~~~~~qk~e~~~ 715 (1200)
T KOG0964|consen 696 DIDQKIDQLNNNMQKVENDR 715 (1200)
T ss_pred HHHHHHHHHHHHHHHHHhHH
Confidence 44444444444444444333
No 61
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=100.00 E-value=2.9e-29 Score=345.21 Aligned_cols=544 Identities=16% Similarity=0.155 Sum_probs=298.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh---HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy11935 8 QTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE---LREFYQTQLNNNQKAQDEIQTLLAKSASIKTE 84 (1334)
Q Consensus 8 ~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~---~~er~~~~~~~~~~l~~~i~~l~~~~~~~~~~ 84 (1334)
+.++..++.++..++..+..+..++..++.++..+..++..+.+. +++++..+..++.+++.++..+..++..+..+
T Consensus 252 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 331 (1179)
T TIGR02168 252 EEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESK 331 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444455555555554 55555555555555555555555555555555
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHhhhhh
Q psy11935 85 LREFYQTQLNNNVKEKLKEFQTQLDSAELTLHREF---QQKEKTIVENAAKQLKQISENEFKQKEKTIVENAAKQLKQIS 161 (1334)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~---~~~~~~i~~~~~~~ie~~~~~~~l~n~~~~~~~~~~~~~~~~ 161 (1334)
+..+ ...+.. +...+..+..++..++..+.... ......+...+..+.+...+...+++++..++..+. .+..
T Consensus 332 ~~~~-~~~l~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~l~~ 407 (1179)
T TIGR02168 332 LDEL-AEELAE-LEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIE--RLEA 407 (1179)
T ss_pred HHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 5555 455555 55555555555555555444433 233334444455555555555555566655555555 5555
Q ss_pred cchhhhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy11935 162 EKPGATKLMLDFKAKCEVYEAEN-----KKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQAIHMITS 236 (1334)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~l~~~l-----~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (1334)
+...+..++..++.++..+..++ ..+...+.++..++..+...+..+..++..+..++..+ +.++..+...+..
T Consensus 408 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~l~~~~~~ 486 (1179)
T TIGR02168 408 RLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEA-EQALDAAERELAQ 486 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 55555555555554444444333 33333333333333333333333333333333333333 3333333333222
Q ss_pred hhhhhhHHH--------------HHhccCCCCCCccccccccccccccccccc------cccccccccCCCcChHHHHHH
Q psy11935 237 DVTHLHTSK--------------ESLATRQPSEQSLIDSTTDTNCPVTQQYVP------SSNQQYAPSSNQQYSIPTSNI 296 (1334)
Q Consensus 237 ~~srl~~Vk--------------~vL~~~~~~~~~gI~G~Vaeli~Vp~~Y~~------G~alQnIVv~~e~~Ak~aI~~ 296 (1334)
+..++..++ .++..... +.|++|.+.++|.|+++|.. |+.+++|||++..+|..+|.+
T Consensus 487 l~~~~~~l~~~~~~~~~~~~~v~~~i~v~~~--~~~~~g~~~~li~~~~~~~~a~~~~~g~~~~~ivv~~~~~a~~~~~~ 564 (1179)
T TIGR02168 487 LQARLDSLERLQENLEGFSEGVKALLKNQSG--LSGILGVLSELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAF 564 (1179)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHhcccc--cCCCccchhceeeeChhHHHHHHHHHHHHhcCeEECCHHHHHHHHHH
Confidence 211111121 12211111 35677777777777777776 888888999999999999999
Q ss_pred hhhcCCCccceechhhhh-ccCc----cchhccCCeEeeeccccccchhhhHHHHhhhhch--hhhHHHHHHHHhhCCCC
Q psy11935 297 NQQYSMFSADSTHMNIVE-RDIP----NSADDMRKYIEMQYSMFSADSTHMNIVERDIPNS--ADDMRKYIEMLLEKPPG 369 (1334)
Q Consensus 297 LK~~~~GRaTFLPl~~Ik-r~l~----~~~~~~~G~iG~A~dLV~~d~~~~~Ii~~LLG~t--~e~ld~A~~iak~~~~r 369 (1334)
|+....|++||+|++.|+ ..+. ..+....|.++++.+|+.|++.+..++.+..|.+ |.+|+.|..++...+..
T Consensus 565 l~~~~~g~~~~l~l~~i~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~ivt~l~~a~~~~~~~~~~ 644 (1179)
T TIGR02168 565 LKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPG 644 (1179)
T ss_pred hcccCCCcEEEeeccccccccccccchhhccccCchhHHHHHHhcccHhHHHHHHHHhCCceEeCCHHHHHHHHHHcCCC
Confidence 999999999999999998 5332 2345567899999999999999999998888875 99999999999988877
Q ss_pred CceEecccccccCCCCcccccccCCCCCcccchhhHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 370 NPVSDLEAEVKDSAGPMTSFLESSVTSDIFNEPALYTKTVRSVTLKISKEKIESLERNLQTETQRSRKLEEELQDTRQTC 449 (1334)
Q Consensus 370 ~RIVTLdGdvin~GGSiTGGs~~~~~~~ll~Rk~ei~~L~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~ 449 (1334)
.++||++|+++.+||+++||+. . |++++..+..++ ..++..+..++..+..+..++..+..++..++..+
T Consensus 645 g~~v~~~G~~~~~gg~~~~~~~-~-------~~~~~~~l~~e~--~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~ 714 (1179)
T TIGR02168 645 YRIVTLDGDLVRPGGVITGGSA-K-------TNSSILERRREI--EELEEKIEELEEKIAELEKALAELRKELEELEEEL 714 (1179)
T ss_pred ceEEecCCEEEcCCceEecCcc-c-------cccchhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999998888998888752 1 445555555555 55555555555555555555555555554444443
Q ss_pred H-----------HHHHHHHhHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhh-
Q psy11935 450 E-----------EVVRKEVSIVTVTLFLERLRSSHSKRSKNADSLVRLQKAQ-DEIQTLLAKSASIKTELREFYQTQLN- 516 (1334)
Q Consensus 450 ~-----------e~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~-~~l~~l~~~~~~l~~~i~~~~~~~~~- 516 (1334)
. .+..+..++..++.+++++..++..++.+...+......+ ..+..+..++..+...+..+...+..
T Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 794 (1179)
T TIGR02168 715 EQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQL 794 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 2222333333333333333333333333333333333222 33333333333333333333222221
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhh
Q psy11935 517 ----NNVKEKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQISEKPGATKLML 570 (1334)
Q Consensus 517 ----~~l~~~l~~~~~~~a~le~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ei~~~ 570 (1334)
..+..++..++.+++.++..+.....++..++.+ +..+..++..+..++..+
T Consensus 795 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~--~~~l~~~~~~~~~~l~~~ 850 (1179)
T TIGR02168 795 KEELKALREALDELRAELTLLNEEAANLRERLESLERR--IAATERRLEDLEEQIEEL 850 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555554444 444444444444444443
No 62
>KOG0018|consensus
Probab=100.00 E-value=5.2e-29 Score=301.00 Aligned_cols=367 Identities=10% Similarity=0.080 Sum_probs=219.6
Q ss_pred HHHHhccCCCCCCcccccccccccccc-ccccc------cccccccccCCCcChHHHHHHhhhcCCCccceechhhhh-c
Q psy11935 244 SKESLATRQPSEQSLIDSTTDTNCPVT-QQYVP------SSNQQYAPSSNQQYSIPTSNINQQYSMFSADSTHMNIVE-R 315 (1334)
Q Consensus 244 Vk~vL~~~~~~~~~gI~G~Vaeli~Vp-~~Y~~------G~alQnIVv~~e~~Ak~aI~~LK~~~~GRaTFLPl~~Ik-r 315 (1334)
-+.++-.-+++ ++|++|.|-|||+=. ++|+. |..++-|||+++.+|+.||+|||.+++|..||||||+|+ .
T Consensus 490 ~~eave~lKr~-fPgv~GrviDLc~pt~kkyeiAvt~~Lgk~~daIiVdte~ta~~CI~ylKeqr~~~~TFlPld~i~v~ 568 (1141)
T KOG0018|consen 490 KQEAVEALKRL-FPGVYGRVIDLCQPTQKKYEIAVTVVLGKNMDAIIVDTEATARDCIQYLKEQRLEPMTFLPLDSIRVK 568 (1141)
T ss_pred HHHHHHHHHHh-CCCccchhhhcccccHHHHHHHHHHHHhcccceEEeccHHHHHHHHHHHHHhccCCccccchhhhhcC
Confidence 33444343444 899999999999988 89998 999999999999999999999999999999999999999 8
Q ss_pred cCccchhccCCeEeeeccccccchhhhHHHHhhhhch--hhhHHHHHHHHhhCCCCCceEecccccccCCCCcccccccC
Q psy11935 316 DIPNSADDMRKYIEMQYSMFSADSTHMNIVERDIPNS--ADDMRKYIEMLLEKPPGNPVSDLEAEVKDSAGPMTSFLESS 393 (1334)
Q Consensus 316 ~l~~~~~~~~G~iG~A~dLV~~d~~~~~Ii~~LLG~t--~e~ld~A~~iak~~~~r~RIVTLdGdvin~GGSiTGGs~~~ 393 (1334)
++...+.+..| +-.+.|.|+|+++|..++.|.-|++ ||+++.|..+|-..+.|+++|||||.+|.-+|-||||++..
T Consensus 569 ~~~e~lr~~~g-~rlv~Dvi~ye~e~eka~~~a~gn~Lvcds~e~Ar~l~y~~~~r~k~valdGtl~~ksGlmsGG~s~~ 647 (1141)
T KOG0018|consen 569 PVNEKLRELGG-VRLVIDVINYEPEYEKAVQFACGNALVCDSVEDARDLAYGGEIRFKVVALDGTLIHKSGLMSGGSSGA 647 (1141)
T ss_pred cccccccCcCC-eEEEEEecCCCHHHHHHHHHHhccceecCCHHHHHHhhhcccccceEEEeeeeEEeccceecCCccCC
Confidence 76545666677 7888999999999999999999999 99999999999999999999999999999999999999653
Q ss_pred CCCCcccchhhHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhH
Q psy11935 394 VTSDIFNEPALYTKTVRSVTLKISKEKIESLERNLQTETQRSRKLEEELQDTRQTCEEVVRKEVSIVTVTLFLERLRSSH 473 (1334)
Q Consensus 394 ~~~~ll~Rk~ei~~L~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~ 473 (1334)
+ +. ..+++.|...- ..+..++..++. -..+....+.++..+...+. ....++..++..+.+...++
T Consensus 648 ~-wd----ek~~~~L~~~k--~rl~eel~ei~~----~~~e~~~v~~~i~~le~~~~---~~~~~~~~~k~~l~~~~~El 713 (1141)
T KOG0018|consen 648 K-WD----EKEVDQLKEKK--ERLLEELKEIQK----RRKEVSSVESKIHGLEMRLK---YSKLDLEQLKRSLEQNELEL 713 (1141)
T ss_pred C-cC----HHHHHHHHHHH--HHHHHHHHHHHH----hhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 2 43 44445554444 333333333222 00122222223332222222 22222222222222222222
Q ss_pred HHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhh-------------------HHHHHHHHHHHHHHHHH
Q psy11935 474 SKRSKNADSLVRLQKAQ-DEIQTLLAKSASIKTELREFYQTQLN-------------------NNVKEKLKEFQTQLDSA 533 (1334)
Q Consensus 474 ~~~~~e~~~l~~~~~~~-~~l~~l~~~~~~l~~~i~~~~~~~~~-------------------~~l~~~l~~~~~~~a~l 533 (1334)
...+.+++.+.-.+..+ .++...+..+.+|+..+++.+..+=. +....+..++.-+++.+
T Consensus 714 ~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l 793 (1141)
T KOG0018|consen 714 QRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKL 793 (1141)
T ss_pred HHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222222 34444444444444444444433322 11113333444444444
Q ss_pred HHHHHH-----HHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhHhhHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 534 ELTLHR-----EFQQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEV-------YEAENKKLKAELTQRDIKLKETN 601 (1334)
Q Consensus 534 e~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~ei~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~ 601 (1334)
+-++.. .+..+.+++.. ++.++.++..++..-... ...+.. ..........++.+.+.....+-
T Consensus 794 ~~~l~fe~~~d~~~~ve~~~~~--v~~~~~~~~~~~~~e~~~--~k~i~e~~~~e~k~k~~~~~~~~e~~e~~k~~~~~~ 869 (1141)
T KOG0018|consen 794 ENQLDFEKQKDTQRRVERWERS--VEDLEKEIEGLKKDEEAA--EKIIAEIEELEKKNKSKFEKKEDEINEVKKILRRLV 869 (1141)
T ss_pred hhhhhheecccHHHHHHHHHHH--HHHHHHhHHhhHHHHHHH--HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444422 22222333333 333333333222211111 111111 12233344555666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 602 HLLKEESKKRELMAKKVESVMQSQLQQAIH 631 (1334)
Q Consensus 602 ~~l~~~~~~~~~l~~~i~~~~~~~w~~~~~ 631 (1334)
..+..+..++..++.+++... ..|.-+++
T Consensus 870 ~~~tkl~~~i~~~es~ie~~~-~er~~lL~ 898 (1141)
T KOG0018|consen 870 KELTKLDKEITSIESKIERKE-SERHNLLS 898 (1141)
T ss_pred HHHHHHhhhhhhhhhHHHHHH-HHHHHHHH
Confidence 777777777777777787777 78877765
No 63
>KOG0933|consensus
Probab=100.00 E-value=5.2e-28 Score=289.06 Aligned_cols=370 Identities=12% Similarity=0.170 Sum_probs=243.8
Q ss_pred Cccccccccccccccccccc-------cccccccccCCCcChHHHHH--HhhhcCCCccceechhhhh-ccCc-c---ch
Q psy11935 256 QSLIDSTTDTNCPVTQQYVP-------SSNQQYAPSSNQQYSIPTSN--INQQYSMFSADSTHMNIVE-RDIP-N---SA 321 (1334)
Q Consensus 256 ~~gI~G~Vaeli~Vp~~Y~~-------G~alQnIVv~~e~~Ak~aI~--~LK~~~~GRaTFLPl~~Ik-r~l~-~---~~ 321 (1334)
.+.|.|+||.||+|.++-.. ||.+-|+||+++.+++..++ -|++ |+|..|||-|. +.++ + .+
T Consensus 518 rs~V~G~Va~Li~vkd~~~~tAle~~aGgrLynvVv~te~tgkqLLq~g~l~r----RvTiIPLnKI~s~~~s~~v~~~a 593 (1174)
T KOG0933|consen 518 RSKVKGLVAKLIKVKDRSYATALETTAGGRLYNVVVDTEDTGKQLLQRGNLRR----RVTIIPLNKIQSFVLSPNVLQAA 593 (1174)
T ss_pred HHHHHHHHHHHheeCcchHHHHHHHHhcCcceeEEeechHHHHHHhhcccccc----eeEEEechhhhhccCCHhHHHHH
Confidence 45799999999999876444 99999999999999999988 4443 89999999999 7776 2 11
Q ss_pred -hccCCeEeeeccccccchhhhHHHHhhhhch--hhhHHHHHHHHhhCCCCCceEecccccccCCCCcccccccCCCCCc
Q psy11935 322 -DDMRKYIEMQYSMFSADSTHMNIVERDIPNS--ADDMRKYIEMLLEKPPGNPVSDLEAEVKDSAGPMTSFLESSVTSDI 398 (1334)
Q Consensus 322 -~~~~G~iG~A~dLV~~d~~~~~Ii~~LLG~t--~e~ld~A~~iak~~~~r~RIVTLdGdvin~GGSiTGGs~~~~~~~l 398 (1334)
...++=+-+|.+||.||+.+.++++|..|.| ++++|.|-.+|..-.-+.|-|||+|||+.|.|.||||+ ++.+.++
T Consensus 594 k~v~~~~v~~al~Li~yd~~l~~amefvFG~tlVc~~~d~AKkVaf~~~i~~rsVTl~GDV~dP~GtlTGGs-~~~~a~~ 672 (1174)
T KOG0933|consen 594 KNVGNDNVELALSLIGYDDELKKAMEFVFGSTLVCDSLDVAKKVAFDPKIRTRSVTLEGDVYDPSGTLTGGS-RSKGADL 672 (1174)
T ss_pred HHhcCchHHHHHHHhcCCHHHHHHHHHHhCceEEecCHHHHHHhhcccccccceeeecCceeCCCCcccCCC-CCCcccH
Confidence 2446677788999999999999999999999 99999999999866667778999999999999999999 4556777
Q ss_pred ccchhhHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHhhHH
Q psy11935 399 FNEPALYTKTVRSVTLKISKEKIESLERNLQTETQRSRKLEEELQDTRQTCE----EVVRKEVSIVTVTLFLERLRSSHS 474 (1334)
Q Consensus 399 l~Rk~ei~~L~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~----e~~~~~~~~~~l~~~~~~~~~~~~ 474 (1334)
|..=..+...+.++ ...+..+..++++++.++..- .++..+++++. ++......+++- +.-++...+.
T Consensus 673 L~~l~~l~~~~~~~--~~~q~el~~le~eL~~le~~~----~kf~~l~~ql~l~~~~l~l~~~r~~~~--e~~~~~~~~~ 744 (1174)
T KOG0933|consen 673 LRQLQKLKQAQKEL--RAIQKELEALERELKSLEAQS----QKFRDLKQQLELKLHELALLEKRLEQN--EFHKLLDDLK 744 (1174)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcC--hHhhHHHHHH
Confidence 76656666666666 666666666666655544332 22233333332 111111111110 1111112222
Q ss_pred HHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 475 KRSKNADSLVRLQKAQ-DEIQTLLAKSASIKTELREFYQTQLN--NNVKEKLKEFQTQLDSAELTLHREFQQKEKTIVEN 551 (1334)
Q Consensus 475 ~~~~e~~~l~~~~~~~-~~l~~l~~~~~~l~~~i~~~~~~~~~--~~l~~~l~~~~~~~a~le~~~~~~~~~~~~~~~~~ 551 (1334)
.+..+......++++. ..+...+.++..++..+.+....... ..+..+|..++.++......+.........++.+
T Consensus 745 ~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE- 823 (1174)
T KOG0933|consen 745 ELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLE- 823 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 2222222222222222 22333333333333333333332222 4455555555555555555666666666666666
Q ss_pred HHHHHHHHhhchhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 552 AAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQAIH 631 (1334)
Q Consensus 552 ~~~~~~~~l~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~~~w~~~~~ 631 (1334)
.++++.++...+.++... +..+..+..++.++...+...+....++++.+....+.......++..+. ..|+-.+.
T Consensus 824 -~e~l~~e~~~~k~~l~~~--~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~-~~~e~~~~ 899 (1174)
T KOG0933|consen 824 -HEELEKEISSLKQQLEQL--EKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLL-TSQEKCLS 899 (1174)
T ss_pred -HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhh-hHHHHHHH
Confidence 677777777777777777 77777777777777777777778888888888888888888888888888 77777654
Q ss_pred hhhcccccccccccccc
Q psy11935 632 MITSDVTHLHVLPCVRV 648 (1334)
Q Consensus 632 ~~~~~~~~~~~~~~~~~ 648 (1334)
-.++.-++..+.
T Consensus 900 -----e~~~~~l~~kkl 911 (1174)
T KOG0933|consen 900 -----EKSDGELERKKL 911 (1174)
T ss_pred -----HhhcccchHHHH
Confidence 455666663333
No 64
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=99.96 E-value=2.8e-30 Score=284.95 Aligned_cols=172 Identities=26% Similarity=0.418 Sum_probs=144.0
Q ss_pred CCcEEEEECCEEEEeCCCCcchh------------------------------------hhhhhcCCCCCCCEEEcCCHH
Q psy11935 662 NEKFEVFIDDKKVMVDPGTTVLQ------------------------------------PVAACAMPVMKGWRVKTNSEM 705 (1334)
Q Consensus 662 ~~~~~~~idg~~~~v~~g~til~------------------------------------~~~ac~~~~~~gm~v~t~s~~ 705 (1334)
+.||+|+|||++|+|++|.|||+ +++||.|||.+||+|.|++++
T Consensus 1 m~~v~i~idg~~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~g~~~~~~aC~t~v~~Gm~v~t~~~~ 80 (234)
T PRK07569 1 MSVKTLTIDDQLVSAREGETLLEAAREAGIPIPTLCHLDGLSDVGACRLCLVEIEGSNKLLPACVTPVAEGMVVQTNTPR 80 (234)
T ss_pred CceEEEEECCEEEEeCCCCHHHHHHHHcCCCCCcCcCCCCCCCCCccCCcEEEECCCCccccCcCCCCCCCCEEEECCHH
Confidence 35899999999999999999999 568999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCCCchhhhHHHhCCCCCcccccccCCCCCccchhhhhhccCCCCcccccceeec
Q psy11935 706 TRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFTDIDFSGKSGTYTRVTRQRSWGLIPSRVFLQSINR 785 (1334)
Q Consensus 706 ~~~~r~~~~~~ll~~hp~~C~~c~~~g~c~lq~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~lc~~~~v~~ 785 (1334)
+..+|+.+|++||.|||+|||+|+++|+|+||+++..||+...+|.... .++ .+
T Consensus 81 ~~~~rk~~l~~ll~~h~~~C~~C~~~g~C~Lq~~a~~~g~~~~~~~~~~--~~~----------------------~~-- 134 (234)
T PRK07569 81 LQEYRRMIVELLFAEGNHVCAVCVANGNCELQDLAIEVGMDHVRFPYLF--PRR----------------------PV-- 134 (234)
T ss_pred HHHHHHHHHHHHHHhccccCcccCCCCCcHHHHHHHHhCCCCcccCccc--CCc----------------------cc--
Confidence 9999999999999999999999999999999999999999877775410 111 11
Q ss_pred CCCcccccccccCCCCcEEEcCCHHHHHHHHHHHHHHhhCCCCCCcccccCCccchhhhhcccCccccccCCCCCceecc
Q psy11935 786 HWIGPVAACAMPVMKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGNDLGTTGRGSDMQVGT 865 (1334)
Q Consensus 786 ~~~~~~~aC~~~v~~gm~i~t~s~~~r~~r~~~~~~ll~~h~~~C~~C~~~g~c~~~~~e~~g~~~~~~~~rg~~~~i~~ 865 (1334)
+...|. +.. +..+| +.|.+| +++|.++.|...+.+.+||....+.+
T Consensus 135 d~s~~~------------i~~--d~~kC--------------i~Cg~C------v~aC~~i~~~~~~~~~~~g~~~~i~~ 180 (234)
T PRK07569 135 DISHPR------------FGI--DHNRC--------------VLCTRC------VRVCDEIEGAHTWDVAGRGAKSRVIT 180 (234)
T ss_pred ccCCCc------------EEe--ehhhC--------------cCccHH------HHHHHHhcCCceeeecccCCcceEee
Confidence 112344 555 67888 888888 99999888888888888888776654
Q ss_pred ccc----cccccccccccccccccccccccCC
Q psy11935 866 YVE----KLFLSELSGNVIDLCPVGALTSKPY 893 (1334)
Q Consensus 866 ~~~----~~~~~~~cg~cv~~CpvGAl~~k~~ 893 (1334)
..+ .+..|..||.|+++||+|||+.++.
T Consensus 181 ~~~~~~~~~~~C~~Cg~Cv~vCP~gAL~~~~~ 212 (234)
T PRK07569 181 DLNQPWGTSETCTSCGKCVQACPTGAIFRKGS 212 (234)
T ss_pred cCCccccccccccchHHHHHhCCCCcEEecCC
Confidence 433 2346999999999999999988866
No 65
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.95 E-value=5.4e-23 Score=283.16 Aligned_cols=418 Identities=14% Similarity=0.122 Sum_probs=227.6
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy11935 162 EKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQAIHMITSDVTHL 241 (1334)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~srl 241 (1334)
....+..++..++.++..++.++..+..++. +.++..+...+..+...+..++..+..+ +.++..+...+..+.+++
T Consensus 401 ~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~l~~~~~~~~~~~ 477 (1179)
T TIGR02168 401 EIERLEARLERLEDRRERLQQEIEELLKKLE--EAELKELQAELEELEEELEELQEELERL-EEALEELREELEEAEQAL 477 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444433332 3333444455555555555555555554 444444444444444444
Q ss_pred hHHH----------HHhccCCCCCCccccccccccccccccccc--cccccccccCCCcChHHHHHHhhhcCCCccceec
Q psy11935 242 HTSK----------ESLATRQPSEQSLIDSTTDTNCPVTQQYVP--SSNQQYAPSSNQQYSIPTSNINQQYSMFSADSTH 309 (1334)
Q Consensus 242 ~~Vk----------~vL~~~~~~~~~gI~G~Vaeli~Vp~~Y~~--G~alQnIVv~~e~~Ak~aI~~LK~~~~GRaTFLP 309 (1334)
...+ ..|..... ...|+.|+|+++|.||++|.. |.+++.|+++ ..-..++.++ -.|+++|+.
T Consensus 478 ~~l~~~~~~l~~~~~~l~~~~~-~~~~~~~~v~~~i~v~~~~~~~~g~~~~li~~~--~~~~~a~~~~---~g~~~~~iv 551 (1179)
T TIGR02168 478 DAAERELAQLQARLDSLERLQE-NLEGFSEGVKALLKNQSGLSGILGVLSELISVD--EGYEAAIEAA---LGGRLQAVV 551 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhccchhHHHHHHhcccccCCCccchhceeeeC--hhHHHHHHHH---HHHHhcCeE
Confidence 3322 22221111 145889999999999999876 9999988884 2334445543 347788886
Q ss_pred hhhhh-c--cCccchhccCCeEeee-ccccccc---hhhhHHHHhhhhch--hhhHHH---HHHHHhhCCCC-CceEe--
Q psy11935 310 MNIVE-R--DIPNSADDMRKYIEMQ-YSMFSAD---STHMNIVERDIPNS--ADDMRK---YIEMLLEKPPG-NPVSD-- 374 (1334)
Q Consensus 310 l~~Ik-r--~l~~~~~~~~G~iG~A-~dLV~~d---~~~~~Ii~~LLG~t--~e~ld~---A~~iak~~~~r-~RIVT-- 374 (1334)
.+++. - .+..-.....|.+++. .++|+.+ ..+..++.+++|.+ +.|+.. ++..+..+.++ .+|||
T Consensus 552 v~~~~~a~~~~~~l~~~~~g~~~~l~l~~i~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~ivt~l 631 (1179)
T TIGR02168 552 VENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDL 631 (1179)
T ss_pred ECCHHHHHHHHHHhcccCCCcEEEeeccccccccccccchhhccccCchhHHHHHHhcccHhHHHHHHHHhCCceEeCCH
Confidence 65554 1 1110001124444433 4777653 14567788999998 888865 55554443443 49999
Q ss_pred -----------cccccccCCCC-c-ccccccCCCCCcccchhhHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 375 -----------LEAEVKDSAGP-M-TSFLESSVTSDIFNEPALYTKTVRSVTLKISKEKIESLERNLQTETQRSRKLEEE 441 (1334)
Q Consensus 375 -----------LdGdvin~GGS-i-TGGs~~~~~~~ll~Rk~ei~~L~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~ 441 (1334)
++|++|+|||+ + +||+. ..+ .. .....+ ..+..++..++..+..+..++..+..+
T Consensus 632 ~~a~~~~~~~~~~g~~v~~~G~~~~~gg~~---~~~----~~---~~~~~~--~~l~~e~~~l~~~~~~l~~~l~~~~~~ 699 (1179)
T TIGR02168 632 DNALELAKKLRPGYRIVTLDGDLVRPGGVI---TGG----SA---KTNSSI--LERRREIEELEEKIEELEEKIAELEKA 699 (1179)
T ss_pred HHHHHHHHHcCCCceEEecCCEEEcCCceE---ecC----cc---ccccch--hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999995 4 46651 111 32 233456 677778888888888888888888888
Q ss_pred HHHHHHHHH----HHHHHHHhHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy11935 442 LQDTRQTCE----EVVRKEVSIVTVTLFLERLRSSHSKRSKNADSLVRLQKAQ-DEIQTLLAKSASIKTELREFYQTQLN 516 (1334)
Q Consensus 442 l~~~~~~~~----e~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~-~~l~~l~~~~~~l~~~i~~~~~~~~~ 516 (1334)
+..+...+. ++..+..++..+...+..++..+..+..++..+......+ .++..+..++..++..+..+...+..
T Consensus 700 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 779 (1179)
T TIGR02168 700 LAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAE 779 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877777766 5555555566666666666666666666665555555444 44444444554444444444333322
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhchhhhhhhhhhHhhHHHHHHHHH
Q psy11935 517 -----NNVKEKLKEFQTQLDSAELTLHREFQQKE-------KTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENK 584 (1334)
Q Consensus 517 -----~~l~~~l~~~~~~~a~le~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~ei~~~~~~~~~~~~~~~~~ 584 (1334)
..+..++..++.++..++..+..+..++. ..+.+ +..+..++..+..++..+ ..++..+...+.
T Consensus 780 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~--~~~l~~~~~~l~~~~~~~--~~~l~~~~~~~~ 855 (1179)
T TIGR02168 780 AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRER--LESLERRIAATERRLEDL--EEQIEELSEDIE 855 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 22333444444444444444444444444 33344 444444455555555555 555554444443
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11935 585 KLKAELTQRDIKLKETNHLL 604 (1334)
Q Consensus 585 ~~~~~~~~~~~~~~~l~~~l 604 (1334)
.+...++.++..+..+...+
T Consensus 856 ~~~~~~~~~~~~~~~l~~~~ 875 (1179)
T TIGR02168 856 SLAAEIEELEELIEELESEL 875 (1179)
T ss_pred HHHHHHHHHHhhHHHHHHHH
Confidence 33333333333333333333
No 66
>COG5013 NarG Nitrate reductase alpha subunit [Energy production and conversion]
Probab=99.94 E-value=5e-26 Score=268.08 Aligned_cols=204 Identities=15% Similarity=0.082 Sum_probs=146.5
Q ss_pred ceeeeee-cccCCCCCceEEEeeCCEEEEec-----CC--CCCCCCccccccccccccccc-cccccCCceEe-------
Q psy11935 902 TRKTESV-DVLDAVGSNIIVSTRTGEVLRVL-----PR--LNEDINEEWLADKGRFAYDGL-KRQRLLTPFVR------- 965 (1334)
Q Consensus 902 ~~~~~s~-c~~C~~gC~i~v~v~~g~v~ri~-----p~--~~~~vn~g~lC~kgr~~~~~l-~~~Rl~~PliR------- 965 (1334)
.|.+.|+ -+.|...|...|+|+||-|.--. |+ |+-|--+-.-|+||-+.--++ +|.|+++|++|
T Consensus 44 DKvVRSTHGVNCTGSCSWkIYVKdGiITWEtQqtDYP~tgPD~PnyEPRGCPRGASfSWY~YSp~RvkyPyiRg~L~emw 123 (1227)
T COG5013 44 DKVVRSTHGVNCTGSCSWKIYVKNGLITWETQQTDYPRTGPDLPNYEPRGCPRGASFSWYLYSPNRVKYPYIRGRLIEMW 123 (1227)
T ss_pred cceeeccCCccccceeeEEEEEeCCEEEEeeccccCCCCCCCCCCCCCCCCCCCCceeeEEeccccccchhHHHHHHHHH
Confidence 3555655 46799999999999999887521 21 233444556799996433344 69999999999
Q ss_pred ------------------------------cCCCCeeecCHHHHHHHHHHHhcc-------CCEEEEeC-CcCCHHHHHH
Q psy11935 966 ------------------------------NCDGQLVATEWEDALIAVAQKLQT-------SEVAGVVG-SLADAEAMVA 1007 (1334)
Q Consensus 966 ------------------------------~~~g~~~~iSWdeAl~~ia~~L~~-------~~i~~~~g-~~~~~e~~~~ 1007 (1334)
.|.|.|+++||+||.+.||..+-- ++|++++. +..+.-+..+
T Consensus 124 REAk~~~gDPV~AWa~IvedP~krk~Yk~aRGkGG~VR~~W~E~~EiIAAA~vyTIk~YGPDRv~GFSPIPAMSmVSyAA 203 (1227)
T COG5013 124 REAKARHGDPVEAWASIVEDPDKRKSYKQARGKGGFVRSSWDEVNELIAAANVYTIKTYGPDRVAGFSPIPAMSMVSYAA 203 (1227)
T ss_pred HHHHHhhCCHHHHHHHHHhCHHHHHHHHHhccCCceEEecHHHHHHHHHHhhhhhhhhcCCccccCcCCcchhhhhhhhc
Confidence 236899999999999999987654 78877654 4566666667
Q ss_pred HHHHHHHhCCCccccCCCCCcchhhhhhhhhccCC---CCcccccccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEE
Q psy11935 1008 LKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLN---NKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVA 1084 (1334)
Q Consensus 1008 ~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~die~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kii 1084 (1334)
..+|+..+|..-+.+..-+|..+- +....+|-- +--.|+-++-+|+.||+|.-.+....++.+-.+ +.+|+|+|
T Consensus 204 GaRfl~LIGGvmlSFYDWYaDLPp--ASPQvwGeQTDVPESaDWynssyii~wGsNvP~TRTPDahf~te~-RYkGtK~v 280 (1227)
T COG5013 204 GARFLSLIGGVMLSFYDWYADLPP--ASPQTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTEV-RYKGTKTV 280 (1227)
T ss_pred cchHHHHhcchhcchhhhhcCCCC--CCcccccccCCCCcccccccceeeeeeccCCCccCCCchhhHHHh-hhcCcceE
Confidence 789999999876665555554331 112233322 233688999999999999888776666666665 47899999
Q ss_pred EEccCCCCcccccc------CCCcHHHHHH
Q psy11935 1085 YIGPKVDLRYDYEH------LGESADLIKQ 1108 (1334)
Q Consensus 1085 vIdp~~~~t~~~a~------~Gtd~a~l~~ 1108 (1334)
+|.|++......+| +|||++++.+
T Consensus 281 ~vspDyae~~KfaD~Wl~~~~GtD~Ala~a 310 (1227)
T COG5013 281 VVSPDYAEVAKFADLWLAPKQGTDAALAMA 310 (1227)
T ss_pred EECCchHHhhhccccccCccCCCcHHHHhc
Confidence 99999876665554 6888887544
No 67
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=99.86 E-value=4.2e-22 Score=216.10 Aligned_cols=138 Identities=23% Similarity=0.319 Sum_probs=106.6
Q ss_pred hhhhhccCC-CCcccccc-----------eeecCC-CcccccccccCCCCcEEEcCCHHHHHHHHHHHHHHhhCCCCCCc
Q psy11935 765 VTRQRSWGL-IPSRVFLQ-----------SINRHW-IGPVAACAMPVMKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCP 831 (1334)
Q Consensus 765 ~~~~~~~~~-ip~lc~~~-----------~v~~~~-~~~~~aC~~~v~~gm~i~t~s~~~r~~r~~~~~~ll~~h~~~C~ 831 (1334)
+|+|+++|| ||+||||+ +||+.+ .++++||+|||++||+|.|+|+.++.+||.+|+|||++||.+|+
T Consensus 88 LeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEVeG~~~lv~AC~tpV~eGM~V~T~Se~v~~~Rk~vLElLLs~Hp~DC~ 167 (297)
T PTZ00305 88 LEVLEREGIRVPKFCYHPILSVAGNCRMCLVQVDGTQNLVVSCATVALPGMSIITDSRLVRDAREGNVELILINHPNDCP 167 (297)
T ss_pred HHHHHHcCCCcCccccCCCCCCCCccceeEEEECCCcCcccccCCcCCCCCEEEeCCHHHHHHHHHHHHHHHhcCCCcCC
Confidence 699999999 99999999 688743 46899999999999999999999999999999999999999999
Q ss_pred ccccCCccchhh-hhcccCccccccCCCCCce---eccccc-ccccccccccccccc----ccccccccCCcccCCCCcc
Q psy11935 832 ICDQGGECDLQD-QSMAFGNDLGTTGRGSDMQ---VGTYVE-KLFLSELSGNVIDLC----PVGALTSKPYSFTARPWET 902 (1334)
Q Consensus 832 ~C~~~g~c~~~~-~e~~g~~~~~~~~rg~~~~---i~~~~~-~~~~~~~cg~cv~~C----pvGAl~~k~~~~~~r~we~ 902 (1334)
.|+++|+|.++. ....|+...+|........ .+++.. .+..||+||+||++| .++|| .|..|+.+.
T Consensus 168 ~C~k~G~CeLQdla~~~Gv~~~Rf~~~~~~~~~~~~~p~i~~D~nKCIlCgRCVRaC~EVqg~~aL-----~~~~RG~~t 242 (297)
T PTZ00305 168 ICEQATNCDLQNVSMNYGTDIPRYKEDKRAVQDFYFDPQTRVVLNRCIHCTRCVRFLNEHAQDFNL-----GMIGRGGLS 242 (297)
T ss_pred cccCcCCcHHHHHHHHhCCCCccCCcccccccccCCCCceeecCCcCcCccHHHHHHHHhhCCcEE-----EEeecCCCC
Confidence 999999998764 1224665544432211111 122111 234699999999999 78888 666777665
Q ss_pred eeeee
Q psy11935 903 RKTES 907 (1334)
Q Consensus 903 ~~~~s 907 (1334)
.....
T Consensus 243 ~I~t~ 247 (297)
T PTZ00305 243 EISTF 247 (297)
T ss_pred EEeec
Confidence 55443
No 68
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=99.85 E-value=1e-21 Score=240.08 Aligned_cols=158 Identities=32% Similarity=0.456 Sum_probs=120.5
Q ss_pred hhhhhccCC-CCcccccc-----------eeecCC-CcccccccccCCCCcEEEcCCHHHHHHHHHHHHHHhhCCCCCCc
Q psy11935 765 VTRQRSWGL-IPSRVFLQ-----------SINRHW-IGPVAACAMPVMKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCP 831 (1334)
Q Consensus 765 ~~~~~~~~~-ip~lc~~~-----------~v~~~~-~~~~~aC~~~v~~gm~i~t~s~~~r~~r~~~~~~ll~~h~~~C~ 831 (1334)
+|+|+++|| ||++|||+ +||..+ .+|++||+|||.+||.|.|+|++++.+|+.+|||||.+||++|+
T Consensus 20 LqAa~~aGi~IP~fCyh~~ls~~GaCRmClVEveg~~k~~~SC~tpv~dGM~I~T~s~~vk~~R~~vmE~LLiNHPlDCp 99 (693)
T COG1034 20 LQAAREAGIDIPTFCYHPRLSIAGACRMCLVEVEGAPKLVASCATPVTDGMVISTNSEEVKKAREGVMEFLLINHPLDCP 99 (693)
T ss_pred HHHHHHcCCCCCcccccCCCCcccceeEEEEEecCCCccccccccccCCCeEEecCCHHHHHHHHHHHHHHHhcCCCCCC
Confidence 699999999 99999999 788743 46999999999999999999999999999999999999999999
Q ss_pred ccccCCccchhhhhc-ccCccccc--cCCCC-Cceecccc-cccccccccccccccc----cccccc---ccCCcccCCC
Q psy11935 832 ICDQGGECDLQDQSM-AFGNDLGT--TGRGS-DMQVGTYV-EKLFLSELSGNVIDLC----PVGALT---SKPYSFTARP 899 (1334)
Q Consensus 832 ~C~~~g~c~~~~~e~-~g~~~~~~--~~rg~-~~~i~~~~-~~~~~~~~cg~cv~~C----pvGAl~---~k~~~~~~r~ 899 (1334)
.|+++|+|.++..-+ .|....+| ..|.. +..+++.. ..+-.||.|++||++| .+..|. .-...+..+.
T Consensus 100 iCD~gGeCeLQD~a~~~G~~~sr~~~~kr~~~~~~~gp~v~~dm~RCI~C~RCVR~c~eiaG~~~l~~~~rg~~~~i~t~ 179 (693)
T COG1034 100 VCDKGGECELQDLAVKYGVSHSRYRETKRTHRDKDLGPLVKYDMNRCILCTRCVRFCKEIAGTHELGVIKRGENSEIGTY 179 (693)
T ss_pred ccCCCCCchhHHHHHHhCCCcccccccccccccccccchhhcccccceechhhHHhhhhhcCccccceeecCCCceeecc
Confidence 999999999987443 36655444 34422 33455544 4455799999999999 333331 1112344566
Q ss_pred CcceeeeeecccCCCCCceEEEe
Q psy11935 900 WETRKTESVDVLDAVGSNIIVST 922 (1334)
Q Consensus 900 we~~~~~s~c~~C~~gC~i~v~v 922 (1334)
|+.......|..|..-|++=+-+
T Consensus 180 ~~~~l~se~cGncv~vCPvGALt 202 (693)
T COG1034 180 LDQPLESELCGNCVDVCPVGALT 202 (693)
T ss_pred cccccccccccceeeeccccccc
Confidence 77655556777777777665443
No 69
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=99.83 E-value=3.5e-20 Score=233.81 Aligned_cols=133 Identities=39% Similarity=0.642 Sum_probs=101.0
Q ss_pred hhhhhccCC-CCcccccc-----------eeecCCC-c-ccccccccCCCCcEEEcCCHHHHHHHHHHHHHHhhCCCCCC
Q psy11935 765 VTRQRSWGL-IPSRVFLQ-----------SINRHWI-G-PVAACAMPVMKGWRVKTNSEMTRRAREGVMEFLLVNHPLDC 830 (1334)
Q Consensus 765 ~~~~~~~~~-ip~lc~~~-----------~v~~~~~-~-~~~aC~~~v~~gm~i~t~s~~~r~~r~~~~~~ll~~h~~~C 830 (1334)
++++++.|| ||++|||+ .|++.+. + +++||+|||++||+|.|+|+.++.+||.+|||||++||.+|
T Consensus 17 l~a~~~~gi~ip~~C~~~~l~~~g~Cr~C~v~v~g~~~~~~~aC~~~~~~gm~v~t~~~~~~~~r~~~~e~ll~~h~~dC 96 (603)
T TIGR01973 17 LQACLSAGIEIPRFCYHEKLSIAGNCRMCLVEVEKFPDKPVASCATPVTDGMKISTNSEKVKKAREGVMEFLLINHPLDC 96 (603)
T ss_pred HHHHHHcCCCccccCCCCCCCCCCccccCEEEECCCCCCcccccCCCCCCCCEEEeCCHHHHHHHHHHHHHHHhcCCCCC
Confidence 689999999 99999988 7787543 4 89999999999999999999999999999999999999999
Q ss_pred cccccCCccchhhhh-cccCccccccC--CCCCc-eecccc-cccccccccccccccc----ccccccccCCcccCCCCc
Q psy11935 831 PICDQGGECDLQDQS-MAFGNDLGTTG--RGSDM-QVGTYV-EKLFLSELSGNVIDLC----PVGALTSKPYSFTARPWE 901 (1334)
Q Consensus 831 ~~C~~~g~c~~~~~e-~~g~~~~~~~~--rg~~~-~i~~~~-~~~~~~~~cg~cv~~C----pvGAl~~k~~~~~~r~we 901 (1334)
+.|+++|+|.++..- ..|+..-+|.. |.... ..+++. -.+-.||.||+||++| .++|| .|..|++.
T Consensus 97 ~~C~~~g~C~Lq~~~~~~g~~~~~~~~~~~~~~~~~~~p~i~~d~~rCI~C~rCvr~c~e~~g~~~l-----~~~~rg~~ 171 (603)
T TIGR01973 97 PICDQGGECDLQDQAVMYGSDRSRFREKKRTVENKYLGPLIKTEMTRCIHCTRCVRFANEVAGVEDL-----GVIGRGNN 171 (603)
T ss_pred CcCCCCCCChHHHHHHHhCCCCCCCCcccccCCCCCCCCCeEecCCcCccccHHHHHHHHhhCCceE-----EEeccCCC
Confidence 999999999986522 23555544432 22211 111211 1234699999999999 56666 44555544
Q ss_pred c
Q psy11935 902 T 902 (1334)
Q Consensus 902 ~ 902 (1334)
.
T Consensus 172 ~ 172 (603)
T TIGR01973 172 V 172 (603)
T ss_pred C
Confidence 3
No 70
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=99.81 E-value=1.1e-19 Score=213.35 Aligned_cols=149 Identities=26% Similarity=0.397 Sum_probs=113.7
Q ss_pred hhhhhccCC-CCcccccc-----------eeecCCCcccccccccCCCCcEEEcCCHHHHHHHHHHHHHHhhCCCCCCcc
Q psy11935 765 VTRQRSWGL-IPSRVFLQ-----------SINRHWIGPVAACAMPVMKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPI 832 (1334)
Q Consensus 765 ~~~~~~~~~-ip~lc~~~-----------~v~~~~~~~~~aC~~~v~~gm~i~t~s~~~r~~r~~~~~~ll~~h~~~C~~ 832 (1334)
++++..+|| ||++||++ .||.++ ..++||+|+|++||+|.|+|+.+..+|+.+|++||++||.+|+.
T Consensus 24 L~a~~~~gI~iP~iCy~~~l~pi~sCd~ClVEidG-~l~rsCsT~v~dGm~v~t~s~rvk~~r~~~md~~l~nH~LyC~v 102 (978)
T COG3383 24 LRAANRNGIEIPHICYHESLGPIGSCDTCLVEIDG-KLVRSCSTPVEDGMVVRTNSERVKEARREAMDRILSNHPLYCTV 102 (978)
T ss_pred HHHHHhcCCcccceeccCCCCcccccceEEEEecC-ceeccccccccCCcEEecccHHHHHHHHHHHHHHHhcCCcCccc
Confidence 578999999 99999998 687654 58999999999999999999999999999999999999999999
Q ss_pred cccC-Cccchhhh-hcccCccc--cccCCCCCcee----cccccccccccccccccccc----ccccccccCCcccCC-C
Q psy11935 833 CDQG-GECDLQDQ-SMAFGNDL--GTTGRGSDMQV----GTYVEKLFLSELSGNVIDLC----PVGALTSKPYSFTAR-P 899 (1334)
Q Consensus 833 C~~~-g~c~~~~~-e~~g~~~~--~~~~rg~~~~i----~~~~~~~~~~~~cg~cv~~C----pvGAl~~k~~~~~~r-~ 899 (1334)
|+.| |.|++... ...|...- ++.++.+.... ..|...|..||+||+||++| -+-||+---.++..| .
T Consensus 103 Cd~nnGdCelh~~~~~~gl~~q~y~y~~k~~~~~~Des~Pfy~ydp~qCIlCgRCVeaCqevqv~eaL~i~w~~~~pRV~ 182 (978)
T COG3383 103 CDNNNGDCELHNMVMALGLTEQRYPYEEKNPPYPKDESNPFYIYDPNQCILCGRCVEACQEVQVNEALTIDWRGEDPRVI 182 (978)
T ss_pred cCCCCCCchHHHHHHHhCCCccccCccccCCCCCcccCCCeEEecchheeehhHHHHHHHhhhceeEEEeecccCCccee
Confidence 9998 99998642 22355543 34444222211 12234566799999999999 355665554555555 4
Q ss_pred Ccce--eeeeecccCCC
Q psy11935 900 WETR--KTESVDVLDAV 914 (1334)
Q Consensus 900 we~~--~~~s~c~~C~~ 914 (1334)
|+.. ...|.|+.||.
T Consensus 183 wd~~~~i~~SSCVsCG~ 199 (978)
T COG3383 183 WDNDVPINESSCVSCGA 199 (978)
T ss_pred cCCCCccccccccccCc
Confidence 7654 46788888764
No 71
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.80 E-value=6.7e-14 Score=192.83 Aligned_cols=99 Identities=19% Similarity=0.281 Sum_probs=61.6
Q ss_pred HHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHhhHHHHHhhHHHHH
Q psy11935 409 VRSVTLKISKEKIESLERNLQTETQRSRKLEEELQDTRQTCE----EVVRKEVSIVTVTLFLERLRSSHSKRSKNADSLV 484 (1334)
Q Consensus 409 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~----e~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~ 484 (1334)
..++ ..+..++..++..+..+...+..+..++..++..+. .+..+..++..++..+..+...+..+...+..+.
T Consensus 673 ~~~l--~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~~ 750 (1164)
T TIGR02169 673 PAEL--QRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE 750 (1164)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456 667777777777777777777777777777776665 5556666666666666666666666666666565
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy11935 485 RLQKAQ-DEIQTLLAKSASIKTELRE 509 (1334)
Q Consensus 485 ~~~~~~-~~l~~l~~~~~~l~~~i~~ 509 (1334)
.....+ .++..+..++..++.++..
T Consensus 751 ~~~~~~~~el~~l~~~i~~l~~~i~~ 776 (1164)
T TIGR02169 751 QEIENVKSELKELEARIEELEEDLHK 776 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555 3444444444444433333
No 72
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=99.79 E-value=7.6e-20 Score=231.08 Aligned_cols=153 Identities=34% Similarity=0.465 Sum_probs=112.0
Q ss_pred hhhhhccCC-CCcccccc-----------eeecCC--CcccccccccCCCCcEEEcCCHHHHHHHHHHHHHHhhCCCCCC
Q psy11935 765 VTRQRSWGL-IPSRVFLQ-----------SINRHW--IGPVAACAMPVMKGWRVKTNSEMTRRAREGVMEFLLVNHPLDC 830 (1334)
Q Consensus 765 ~~~~~~~~~-ip~lc~~~-----------~v~~~~--~~~~~aC~~~v~~gm~i~t~s~~~r~~r~~~~~~ll~~h~~~C 830 (1334)
+++++.+|| ||+||||+ .||+.+ .++++||+|||.+||+|.|+|++++.+||.+|||||++||.+|
T Consensus 20 l~a~~~~gi~IP~lCy~~~l~~~g~Cr~ClVev~~~~~~~~~sC~~~v~~gm~v~T~s~~v~~~r~~~le~ll~~Hp~dC 99 (687)
T PRK09130 20 LQACEAAGAEIPRFCYHERLSIAGNCRMCLVEVKGGPPKPVASCAMPVGEGMVIFTNTPMVKKAREGVMEFLLINHPLDC 99 (687)
T ss_pred HHHHHHcCCCcCcccCCCCCCCCCCCCCCEEEECCCCCCcccccCCCCCCCCEEEeCCHHHHHHHHHHHHHHHhcCCCCC
Confidence 699999999 99999998 788754 4799999999999999999999999999999999999999999
Q ss_pred cccccCCccchhhhh-cccCccccccCCCCCc---eeccccc-ccccccccccccccc----ccccccccCCcccCCCCc
Q psy11935 831 PICDQGGECDLQDQS-MAFGNDLGTTGRGSDM---QVGTYVE-KLFLSELSGNVIDLC----PVGALTSKPYSFTARPWE 901 (1334)
Q Consensus 831 ~~C~~~g~c~~~~~e-~~g~~~~~~~~rg~~~---~i~~~~~-~~~~~~~cg~cv~~C----pvGAl~~k~~~~~~r~we 901 (1334)
+.|+++|+|.++..- ..|+..-+|....... ..++... .+-.||.||+||++| .++|| .+..|++.
T Consensus 100 ~~C~~~g~C~Lq~~~~~~g~~~~r~~~~~~~~~~~~~~p~i~~~~~rCI~C~rCvr~c~ev~g~~~l-----~~~~rg~~ 174 (687)
T PRK09130 100 PICDQGGECDLQDQAMAYGVDTSRYHENKRAVEDKYMGPLVKTVMTRCIHCTRCVRFATEVAGVPEL-----GAIGRGED 174 (687)
T ss_pred CCCCCCCCCHHHHHHHHhCCCCCCCCccccccCcCCCCCcEEEecccCCcccHHHHHHHhhcCCceE-----EeeecCCC
Confidence 999999999986522 2366554443221111 1122111 234699999999999 77777 44445544
Q ss_pred ceeee--------eecccCCCCCceEEEe
Q psy11935 902 TRKTE--------SVDVLDAVGSNIIVST 922 (1334)
Q Consensus 902 ~~~~~--------s~c~~C~~gC~i~v~v 922 (1334)
+.... ..|..|..-|++-+-+
T Consensus 175 ~~i~~~~~~~~~~~~~G~cv~~CPvgAl~ 203 (687)
T PRK09130 175 MEITTYLEQALTSELSGNVIDLCPVGALT 203 (687)
T ss_pred CEEccCCCCCccccccccHHhhCCCcccc
Confidence 33221 2355555567665444
No 73
>KOG0250|consensus
Probab=99.78 E-value=3.8e-13 Score=166.53 Aligned_cols=269 Identities=13% Similarity=0.113 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH-------
Q psy11935 171 LDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQAIHMITSDVTHLHT------- 243 (1334)
Q Consensus 171 ~~~~~~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~srl~~------- 243 (1334)
.....++.+.+.+++.+..+.+.++..+..|..++++..+.+.+.+.+.... +....++.+.++.....++.
T Consensus 390 ~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i-~~~i~~l~k~i~~~~~~l~~lk~~k~d 468 (1074)
T KOG0250|consen 390 NELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHI-EGEILQLRKKIENISEELKDLKKTKTD 468 (1074)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4444445555555555555555555555555555555555555555555555 55555555555555544433
Q ss_pred --------HHHHhcc---CCCCCCcccccccccccccccc-ccc------cccccccccCCCcChHHHHHHhhhcCCC--
Q psy11935 244 --------SKESLAT---RQPSEQSLIDSTTDTNCPVTQQ-YVP------SSNQQYAPSSNQQYSIPTSNINQQYSMF-- 303 (1334)
Q Consensus 244 --------Vk~vL~~---~~~~~~~gI~G~Vaeli~Vp~~-Y~~------G~alQnIVv~~e~~Ak~aI~~LK~~~~G-- 303 (1334)
+-++|.. ....+..--.|+.|-+|+|++. |.. |+.+++.+|.+..|+...=+.+++.+++
T Consensus 469 kvs~FG~~m~~lL~~I~r~~~~f~~~P~GPlG~~Vtl~~~KWa~aIE~~L~n~lnaFiv~sh~D~~~Lr~i~~~~~~~~~ 548 (1074)
T KOG0250|consen 469 KVSAFGPNMPQLLRAIERRKRRFQTPPKGPLGKYVTLKEPKWALAIERCLGNLLNAFIVTSHKDARILRAIMRRLKIPGN 548 (1074)
T ss_pred hhhhcchhhHHHHHHHHHHHhcCCCCCCCCccceeEecCcHHHHHHHHHHHHhhhhheeCCHhhHHHHHHHHHHcCCCCC
Confidence 4455521 1222234567999999999875 433 9999999999999999888888877776
Q ss_pred cccee-----chhhhhccCccchhccCCeEeeeccccccchhhhHHHHhhh---h--ch--hhhHHHHHHH-Hhh--CCC
Q psy11935 304 SADST-----HMNIVERDIPNSADDMRKYIEMQYSMFSADSTHMNIVERDI---P--NS--ADDMRKYIEM-LLE--KPP 368 (1334)
Q Consensus 304 RaTFL-----Pl~~Ikr~l~~~~~~~~G~iG~A~dLV~~d~~~~~Ii~~LL---G--~t--~e~ld~A~~i-ak~--~~~ 368 (1334)
|+|.. |.+.=... .....+|.++. .+.||+- -|..+|. | ++ ++|=..|..+ ... -.+
T Consensus 549 ~ptIvvs~~~~~~y~~~~--~p~~~~pTil~----~le~ddp--~V~N~LID~s~iE~~lLiEdk~Ea~~~m~s~~~p~n 620 (1074)
T KOG0250|consen 549 RPTIVVSSFTPFDYSVGR--NPGYEFPTILD----ALEFDDP--EVLNVLIDKSGIEQVLLIEDKKEAREFMQSDKPPAN 620 (1074)
T ss_pred CCcEEEecCCcccccccc--CCCCCCCceee----eeecCCh--HHHHHhhhhccceeEEEecchHHHHHHHhcCCCCcc
Confidence 44421 11111100 01112344443 3555422 2333443 2 22 7774444444 444 344
Q ss_pred CCceEecccccccCCCCc---c---cccccCCCCCcccchhhHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 369 GNPVSDLEAEVKDSAGPM---T---SFLESSVTSDIFNEPALYTKTVRSVTLKISKEKIESLERNLQTETQRSRKLEEEL 442 (1334)
Q Consensus 369 r~RIVTLdGdvin~GGSi---T---GGs~~~~~~~ll~Rk~ei~~L~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l 442 (1334)
-.++-||||.-+-.||+. + |+-.++...-=.+-..+|+.|+..+ ..++.++..++....+.+..+++++..+
T Consensus 621 ~~~aytldg~~~~~~g~~~~~ySt~~~~~r~~~~~~~s~d~~ie~le~e~--~~l~~~~~~l~~~~~~~e~~l~e~~~~~ 698 (1074)
T KOG0250|consen 621 VTKAYTLDGRQIFAGGPNYRVYSTRGTRARRPGVDEFSFDDEIEDLEREA--SRLQKEILELENQRREAEKNLEELEKKL 698 (1074)
T ss_pred ceeeeccCccccccCCCCcceeccCCCCCCCccccchhHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999998872 1 1111111111133356777777777 7777766666666666666666666666
Q ss_pred HHHHHHHH
Q psy11935 443 QDTRQTCE 450 (1334)
Q Consensus 443 ~~~~~~~~ 450 (1334)
..++..+.
T Consensus 699 ~~l~~~~~ 706 (1074)
T KOG0250|consen 699 RELSEHIE 706 (1074)
T ss_pred HHHHHHHH
Confidence 55555544
No 74
>PRK04863 mukB cell division protein MukB; Provisional
Probab=99.73 E-value=7.8e-13 Score=176.63 Aligned_cols=365 Identities=12% Similarity=0.057 Sum_probs=181.7
Q ss_pred HHHHhccCCCCCCcccccccccccc-ccccccc------cccccccccCCCcChHHHHHHhhhcCCCccceechhh--hh
Q psy11935 244 SKESLATRQPSEQSLIDSTTDTNCP-VTQQYVP------SSNQQYAPSSNQQYSIPTSNINQQYSMFSADSTHMNI--VE 314 (1334)
Q Consensus 244 Vk~vL~~~~~~~~~gI~G~Vaeli~-Vp~~Y~~------G~alQnIVv~~e~~Ak~aI~~LK~~~~GRaTFLPl~~--Ik 314 (1334)
++.+|++... .++||+ |+|+|. ||.+|+. |+++++|||+|..+|..+|+||.- +|=|. |.
T Consensus 671 ~~~~l~~~~~-~~~Gvl--vsel~~~v~~~~~~~~~A~lg~~~~~iVv~d~~~A~~ai~~L~~--------~p~d~~li~ 739 (1486)
T PRK04863 671 EDPRLNALAE-RFGGVL--LSEIYDDVSLEDAPYFSALYGPARHAIVVPDLSDAAEQLAGLED--------CPEDLYLIE 739 (1486)
T ss_pred ccHHHHHHHH-hcCCee--hhHhhhccCcchHHHHHHHHHhhhCeEEeCCHHHHHHHHHhccC--------Cccceeeec
Confidence 5555554421 288998 999999 9999997 999999999999999999999976 55332 22
Q ss_pred ccCc----cchhccCCeEeeeccccccchhhhHHHHhhh-hch-----hhhHHH-----HHHHHhhCCCCCceEeccccc
Q psy11935 315 RDIP----NSADDMRKYIEMQYSMFSADSTHMNIVERDI-PNS-----ADDMRK-----YIEMLLEKPPGNPVSDLEAEV 379 (1334)
Q Consensus 315 r~l~----~~~~~~~G~iG~A~dLV~~d~~~~~Ii~~LL-G~t-----~e~ld~-----A~~iak~~~~r~RIVTLdGdv 379 (1334)
..+. .......++-+|...+.+-+-.|..+-+..| ||- .++|+. +-..++. .|.|-.++ -
T Consensus 740 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~r~s~~p~~p~~gr~are~~~~~l~~~~~~~~~~~~~~---~~~~~~~~--r 814 (1486)
T PRK04863 740 GDPDSFDDSVFSVEELEKAVVVKIADRQWRYSRFPEVPLFGRAAREKRIEQLRAEREELAERYATL---SFDVQKLQ--R 814 (1486)
T ss_pred CChhHHhccCccHHHhcCCeeeeecchhhhhccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHH--H
Confidence 2211 1234445666777777766667777766655 776 344411 1111111 11222111 1
Q ss_pred ccCCCC-cccccccCCCCCcccchhhHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q psy11935 380 KDSAGP-MTSFLESSVTSDIFNEPALYTKTVRSVTLKISKEKIESLERNLQTETQRSRKLEEELQDTRQTCE-------- 450 (1334)
Q Consensus 380 in~GGS-iTGGs~~~~~~~ll~Rk~ei~~L~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~-------- 450 (1334)
++.-++ +.|+.. .-.=.-.--.++..+..++ .++...+..++.+.++...++..+++.+..++.-+-
T Consensus 815 ~~~~~~~~~~~~~--~~~f~~~pe~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 890 (1486)
T PRK04863 815 LHQAFSRFIGSHL--AVAFEADPEAELRQLNRRR--VELERALADHESQEQQQRSQLEQAKEGLSALNRLLPRLNLLADE 890 (1486)
T ss_pred HHHHHHHHHhhCc--chhcCCCcHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcCCc
Confidence 222222 333331 0000012234555555555 555555555555555555555555555544433221
Q ss_pred ----HHHHHHHh----------HHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHH----HHHHHHHHHHHHHH--------
Q psy11935 451 ----EVVRKEVS----------IVTVTLFLERLRSSHSKRSKNADSLVRLQKAQ----DEIQTLLAKSASIK-------- 504 (1334)
Q Consensus 451 ----e~~~~~~~----------~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~----~~l~~l~~~~~~l~-------- 504 (1334)
.+..+..+ .......++++...+..++...........+. +.+..+..++-.+.
T Consensus 891 ~~~~~~~~~~~~~~~~~~a~~y~~~~~~~L~qLE~~l~~L~~Dp~~~e~lr~e~~~~~~~~~~~~~~~~~l~~~~~~~~~ 970 (1486)
T PRK04863 891 TLADRVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAH 970 (1486)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12222222 22222333333333333333322222111111 11111111111111
Q ss_pred -----------------HHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh-
Q psy11935 505 -----------------TELREFYQTQLN--NNVKEKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQISEKPG- 564 (1334)
Q Consensus 505 -----------------~~i~~~~~~~~~--~~l~~~l~~~~~~~a~le~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 564 (1334)
.++..--..+.. ..+.+++.+.+.++...+..+..+...+...+.. +.+.+..+.++-
T Consensus 971 ~~y~~~~~~l~~~~~~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~--L~E~eqe~~~~g~ 1048 (1486)
T PRK04863 971 FSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQM--LQELKQELQDLGV 1048 (1486)
T ss_pred ccHHHHHhHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHcCC
Confidence 111000000000 1122222222333333333333333333322222 233333322211
Q ss_pred -----------hhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11935 565 -----------ATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQAIHMI 633 (1334)
Q Consensus 565 -----------~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~~~w~~~~~~~ 633 (1334)
..-..+ ...+-........++.++.-.+.+++.++..+.+...+...+.+.+..++ +.|...+.+.
T Consensus 1049 ~~~~~~~~~~~~~~~~l--~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~aK-~~W~~v~~~~ 1125 (1486)
T PRK04863 1049 PADSGAEERARARRDEL--HARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAK-AGWCAVLRLV 1125 (1486)
T ss_pred CCCccHHHHHHHhHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 011334 44444455556677888888999999999999999999999999999999 9999998643
No 75
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.71 E-value=3.9e-11 Score=162.16 Aligned_cols=290 Identities=17% Similarity=0.193 Sum_probs=145.9
Q ss_pred ccCCeEeeeccccccchhhhHHHHhhhhch-----hhhH---HHHHHHHhhCCC--------------CC----------
Q psy11935 323 DMRKYIEMQYSMFSADSTHMNIVERDIPNS-----ADDM---RKYIEMLLEKPP--------------GN---------- 370 (1334)
Q Consensus 323 ~~~G~iG~A~dLV~~d~~~~~Ii~~LLG~t-----~e~l---d~A~~iak~~~~--------------r~---------- 370 (1334)
..+|++|...+||+++++|...++-.||.. |+|- ..|+.+-|+.+- +.
T Consensus 513 ~~~Gv~G~v~~li~v~~~y~~Aie~alG~~l~~vVV~~~~~a~~~i~~lk~~~~gr~tflpl~~i~~~~~~~~~~~~g~~ 592 (1163)
T COG1196 513 GLPGVYGPVAELIKVKEKYETALEAALGNRLQAVVVENEEVAKKAIEFLKENKAGRATFLPLDRIKPLRSLKSDAAPGFL 592 (1163)
T ss_pred cCCCccchHHHhcCcChHHHHHHHHHcccccCCeeeCChHHHHHHHHHHhhcCCCccccCchhhhccccccccccccchh
Confidence 389999999999999999999999999854 7763 444444443211 00
Q ss_pred ----ceEeccc---------------------------------ccccCCCC-c-ccccccCCCCCcccchhhHHHHHHH
Q psy11935 371 ----PVSDLEA---------------------------------EVKDSAGP-M-TSFLESSVTSDIFNEPALYTKTVRS 411 (1334)
Q Consensus 371 ----RIVTLdG---------------------------------dvin~GGS-i-TGGs~~~~~~~ll~Rk~ei~~L~~~ 411 (1334)
.+|+-|. -+|...|- + .||+... .+.-.+.. +.. ..+
T Consensus 593 ~~a~dli~~d~~~~~~~~~~l~~t~Iv~~l~~A~~l~~~~~~~~riVTl~G~~~~~~G~~tG--G~~~~~~~-~~~-~~~ 668 (1163)
T COG1196 593 GLASDLIDFDPKYEPAVRFVLGDTLVVDDLEQARRLARKLRIKYRIVTLDGDLVEPSGSITG--GSRNKRSS-LAQ-KRE 668 (1163)
T ss_pred HHHHHHhcCCHHHHHHHHHHhCCeEEecCHHHHHHHHHhcCCCceEEecCCcEEeCCeeeec--CCccccch-hhH-HHH
Confidence 1222221 11222232 1 2233211 12112222 122 224
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHhhHHHHHhhHHHHHHHH
Q psy11935 412 VTLKISKEKIESLERNLQTETQRSRKLEEELQDTRQTCE----EVVRKEVSIVTVTLFLERLRSSHSKRSKNADSLVRLQ 487 (1334)
Q Consensus 412 ~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~----e~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~ 487 (1334)
+ ..+..++..++..+..+..++..++..+..+...+. ....+..++..+..++..+..+...+...+..++..+
T Consensus 669 l--~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 746 (1163)
T COG1196 669 L--KELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEEL 746 (1163)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 566666666777777777777776666666655555 3344444445555555555555555555555555555
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Q psy11935 488 KAQ-DEIQTLLAKSASIKTELREFYQTQLN-----NNVKEKLKEFQTQLDSAELTLHREFQQKEKTIVENAA-------K 554 (1334)
Q Consensus 488 ~~~-~~l~~l~~~~~~l~~~i~~~~~~~~~-----~~l~~~l~~~~~~~a~le~~~~~~~~~~~~~~~~~~~-------~ 554 (1334)
..+ ..+..++.++..++..+..+...... +.+.......+..+..++.++......+..+..+ + +
T Consensus 747 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 824 (1163)
T COG1196 747 EELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERE--LESLEQRRE 824 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 444 55656666666666666666555533 2222222222233333444443333333333333 3 3
Q ss_pred HHHHHhhchhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 555 QLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVM 622 (1334)
Q Consensus 555 ~~~~~l~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~ 622 (1334)
.+..++..+..++..+ +.++..+...+..+...++.++.++..++..+..+......+..+...+.
T Consensus 825 ~~~~ei~~l~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~ 890 (1163)
T COG1196 825 RLEQEIEELEEEIEEL--EEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELE 890 (1163)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444 44444444444444444455555555555555555544444444444333
No 76
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=99.71 E-value=1.1e-17 Score=216.01 Aligned_cols=133 Identities=32% Similarity=0.455 Sum_probs=100.3
Q ss_pred hhhhhccCC-CCcccccc-----------eeecCC-CcccccccccCCCCcEEEcC--CHHHHHHHHHHHHHHhhCCCCC
Q psy11935 765 VTRQRSWGL-IPSRVFLQ-----------SINRHW-IGPVAACAMPVMKGWRVKTN--SEMTRRAREGVMEFLLVNHPLD 829 (1334)
Q Consensus 765 ~~~~~~~~~-ip~lc~~~-----------~v~~~~-~~~~~aC~~~v~~gm~i~t~--s~~~r~~r~~~~~~ll~~h~~~ 829 (1334)
+++++..|| ||++|||+ .|++++ .++++||+|||.+||+|.|+ |+.++..||.+|||||++||.+
T Consensus 23 l~aa~~~gi~ip~~C~~~~l~~~g~Cr~C~Vev~g~~~~~~aC~t~v~~gm~V~t~~~s~~v~~~r~~~le~ll~~hp~d 102 (797)
T PRK07860 23 IRAAELLGIQIPRFCDHPLLDPVGACRQCLVEVEGQRKPQASCTTTVTDGMVVKTQLTSPVADKAQHGVMELLLINHPLD 102 (797)
T ss_pred HHHHHHcCCCCCeecCCCCCCCCcccCccEEEECCCcccccccCCCCCCCcEEEeCCCCHHHHHHHHHHHHHHHhcCCCC
Confidence 589999999 99999997 688744 36889999999999999998 9999999999999999999999
Q ss_pred CcccccCCccchhhhhc-ccCccccccC--CCCCc--eecccc-cccccccccccccccc----ccccccccCCcccCCC
Q psy11935 830 CPICDQGGECDLQDQSM-AFGNDLGTTG--RGSDM--QVGTYV-EKLFLSELSGNVIDLC----PVGALTSKPYSFTARP 899 (1334)
Q Consensus 830 C~~C~~~g~c~~~~~e~-~g~~~~~~~~--rg~~~--~i~~~~-~~~~~~~~cg~cv~~C----pvGAl~~k~~~~~~r~ 899 (1334)
|+.|+++|+|.++..-+ .|...-+|.. |.... .++++. -.+-.||.||+||++| .++|| .+..|+
T Consensus 103 C~~C~~~g~C~Lq~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~rCI~C~rCvr~c~ev~g~~~l-----~~~~rg 177 (797)
T PRK07860 103 CPVCDKGGECPLQNQAMSNGRAESRFTDVKRTFPKPINISTQVLLDRERCVLCARCTRFSDQIAGDPFI-----DLQERG 177 (797)
T ss_pred CCCCCCCCCcHHHHHHHHhCCCCccCccccccCCCCCCCCcceeecccccccCcHHHHHHHhhcCCcEE-----EeeecC
Confidence 99999999999865322 3554444432 11111 112111 1234699999999999 67777 444455
Q ss_pred Ccc
Q psy11935 900 WET 902 (1334)
Q Consensus 900 we~ 902 (1334)
+..
T Consensus 178 ~~~ 180 (797)
T PRK07860 178 ALQ 180 (797)
T ss_pred CCC
Confidence 443
No 77
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=99.70 E-value=1.5e-17 Score=209.79 Aligned_cols=122 Identities=25% Similarity=0.426 Sum_probs=94.7
Q ss_pred hhhhhccCC-CCcccccc-----------eeecCCCcccccccccCCCCcEEEcCCHHHHHHHHHHHHHHhhCCCCCCcc
Q psy11935 765 VTRQRSWGL-IPSRVFLQ-----------SINRHWIGPVAACAMPVMKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPI 832 (1334)
Q Consensus 765 ~~~~~~~~~-ip~lc~~~-----------~v~~~~~~~~~aC~~~v~~gm~i~t~s~~~r~~r~~~~~~ll~~h~~~C~~ 832 (1334)
+++++.+|| ||++|||+ .|++++ .+++||+|||++||+|.|+|+.++..|+.+|++||++||++|+.
T Consensus 20 l~aa~~~gi~iP~lC~~~~~~~~G~Cr~C~VeV~G-~~~~AC~t~v~dGM~V~T~s~~v~~~Rk~vle~ll~~HpldC~~ 98 (819)
T PRK08493 20 LNVARRNGIFIPAICYLSGCSPTLACRLCMVEADG-KRVYSCNTKAKEGMNILTNTPNLMDERNAIMQTYDVNHPLECGV 98 (819)
T ss_pred HHHHHHcCCccccccccCCCCCCccccceEEEECC-EEeccccCCCCCCCEEEecCHHHHHHHHHHHHHHHhccCCCCCc
Confidence 589999999 99999987 567654 46899999999999999999999999999999999999999999
Q ss_pred cccCCccchhh--hhcccCccccccCCCCCcee---cccccccccccccccccccccc----ccc
Q psy11935 833 CDQGGECDLQD--QSMAFGNDLGTTGRGSDMQV---GTYVEKLFLSELSGNVIDLCPV----GAL 888 (1334)
Q Consensus 833 C~~~g~c~~~~--~e~~g~~~~~~~~rg~~~~i---~~~~~~~~~~~~cg~cv~~Cpv----GAl 888 (1334)
|+++|+|.++. .+ .|+..-.+..+..+... +.....+-.|+.||+||++||. +||
T Consensus 99 Cd~~geCeLQ~~a~~-~gv~~~~~~~~~~~~~~~~~~~I~~D~~rCI~C~RCVr~C~ev~g~~al 162 (819)
T PRK08493 99 CDKSGECELQNFTHE-MGVNHQPYAIKDTHKPHKHWGKINYDPSLCIVCERCVTVCKDKIGESAL 162 (819)
T ss_pred CCCCCCcHHHHHHHH-hCCCCCcCccccccccccCCCcEEechhhcccccHHHhhCcccccchhh
Confidence 99999999753 33 35554444322111111 1111234469999999999974 666
No 78
>KOG0964|consensus
Probab=99.70 E-value=6.6e-11 Score=143.15 Aligned_cols=188 Identities=10% Similarity=0.099 Sum_probs=107.3
Q ss_pred cCCeEeeeccccccchhhhHHHHhhhhch-----hhhHHHHHHHHhhCCC------------------------------
Q psy11935 324 MRKYIEMQYSMFSADSTHMNIVERDIPNS-----ADDMRKYIEMLLEKPP------------------------------ 368 (1334)
Q Consensus 324 ~~G~iG~A~dLV~~d~~~~~Ii~~LLG~t-----~e~ld~A~~iak~~~~------------------------------ 368 (1334)
..|+.|...+||+++++|...++-.-|+. |+|=+.|..|-++++.
T Consensus 521 ~ngv~G~v~eL~~v~~~f~tavEvtaGNsLF~iVVdndevATkIl~~~n~m~~GrVTF~PLNrl~~r~v~yp~~sdaiPl 600 (1200)
T KOG0964|consen 521 PNGVFGTVYELIKVPNKFKTAVEVTAGNSLFNIVVDNDEVATKILRKLNKMKGGRVTFMPLNRLKARDVEYPKDSDAIPL 600 (1200)
T ss_pred ccccceehhhhhcCCHHHHhHHhhhcccceEEEEecccHHHHHHHHHHHhccCCeeEEeecccCchhhccCCCCCCccch
Confidence 57999999999999999999999999987 8998999888886654
Q ss_pred ------------------CCceEeccccccc--------CCCCcccccccCCCC---CcccchhhHHHHHHHhhHHhHHH
Q psy11935 369 ------------------GNPVSDLEAEVKD--------SAGPMTSFLESSVTS---DIFNEPALYTKTVRSVTLKISKE 419 (1334)
Q Consensus 369 ------------------r~RIVTLdGdvin--------~GGSiTGGs~~~~~~---~ll~Rk~ei~~L~~~~~~~~~~~ 419 (1334)
.--||.-|-++=. -+=+|.|--+.+++. |..-.++--=++...+ ...+.
T Consensus 601 i~kl~y~p~fdka~k~Vfgktivcrdl~qa~~~ak~~~ln~ITl~GDqvskkG~lTgGy~D~krsrLe~~k~~--~~~~~ 678 (1200)
T KOG0964|consen 601 ISKLRYEPQFDKALKHVFGKTIVCRDLEQALRLAKKHELNCITLSGDQVSKKGVLTGGYEDQKRSRLELLKNV--NESRS 678 (1200)
T ss_pred HHHhCcchhhHHHHHHHhCceEEeccHHHHHHHHHhcCCCeEEeccceecccCCccccchhhhhhHHHHHhhh--HHHHH
Confidence 1122222221110 122334443222221 3333333333333455 55555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHH-HHHHHHHH
Q psy11935 420 KIESLERNLQTETQRSRKLEEELQDTRQTCEEVVRKEVSIVTVTLFLERLRSSHSKRSKNADSLVRLQKAQ-DEIQTLLA 498 (1334)
Q Consensus 420 ~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~-~~l~~l~~ 498 (1334)
++..|++.+..+...+....++++.+... ++..+.++.....+...+++++.....+...+...+.-. ..|..+..
T Consensus 679 ~~~~l~~~L~~~r~~i~~~~~~i~q~~~~---~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~ 755 (1200)
T KOG0964|consen 679 ELKELQESLDEVRNEIEDIDQKIDQLNNN---MQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKT 755 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHH
Confidence 55556666666666555555555544443 444455555555555555655555555555554444333 55566666
Q ss_pred HHHHHHHHHHHHHHHhhh
Q psy11935 499 KSASIKTELREFYQTQLN 516 (1334)
Q Consensus 499 ~~~~l~~~i~~~~~~~~~ 516 (1334)
.+..+....+.++..+..
T Consensus 756 ~l~~~~~~~~~~e~el~s 773 (1200)
T KOG0964|consen 756 SLHKLESQSNYFESELGS 773 (1200)
T ss_pred HHHHHHHHHHhHHHHHhH
Confidence 666555555555544444
No 79
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=99.70 E-value=2e-17 Score=214.98 Aligned_cols=153 Identities=30% Similarity=0.413 Sum_probs=110.2
Q ss_pred hhhhhccCC-CCcccccc-----------eeecCC-CcccccccccCCCCcEEEcCCHHHHHHHHHHHHHHhhCCCCCCc
Q psy11935 765 VTRQRSWGL-IPSRVFLQ-----------SINRHW-IGPVAACAMPVMKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCP 831 (1334)
Q Consensus 765 ~~~~~~~~~-ip~lc~~~-----------~v~~~~-~~~~~aC~~~v~~gm~i~t~s~~~r~~r~~~~~~ll~~h~~~C~ 831 (1334)
+++++..|| ||++|||+ .|++++ .++++||+|||.+||+|.|+|+.++..||.+|||||++||.+|+
T Consensus 20 l~a~~~~g~~ip~~c~~~~~~~~~~C~~C~v~v~~~~~~~~aC~~~~~~gm~v~t~~~~~~~~r~~~l~~ll~~h~~~C~ 99 (776)
T PRK09129 20 IEAADKAGIYIPRFCYHKKLSIAANCRMCLVEVEKAPKPLPACATPVTDGMKVFTRSEKALKAQKSVMEFLLINHPLDCP 99 (776)
T ss_pred HHHHHHcCCCCCcccCCCCCCCCCCcceeEEEECCCCCcCcccCCCCCCCCEEEcCCHHHHHHHHHHHHHHHhcCCCCcc
Confidence 689999999 99999987 678754 35789999999999999999999999999999999999999999
Q ss_pred ccccCCccchhhhh-cccCccccccCCCCCce---eccccc-ccccccccccccccc----ccccccccCCcccCCCCcc
Q psy11935 832 ICDQGGECDLQDQS-MAFGNDLGTTGRGSDMQ---VGTYVE-KLFLSELSGNVIDLC----PVGALTSKPYSFTARPWET 902 (1334)
Q Consensus 832 ~C~~~g~c~~~~~e-~~g~~~~~~~~rg~~~~---i~~~~~-~~~~~~~cg~cv~~C----pvGAl~~k~~~~~~r~we~ 902 (1334)
.|+++|+|.++..- -.|...-+|.....+.. .+++.. .+..|++||+||++| .++|| .|..|+++.
T Consensus 100 ~c~~~g~C~Lq~~a~~~g~~~~~~~~~~~~~~~~~~~p~i~~d~~rCi~C~rCvr~c~ev~g~~~l-----~~~~rg~~~ 174 (776)
T PRK09129 100 ICDQGGECQLQDLAVGYGRSTSRYTEEKRVVFDKDLGPLISTEMTRCIHCTRCVRFGQEIAGVMEL-----GMMGRGEHS 174 (776)
T ss_pred cCCCCCCCHHHHHHHHhCCCCCccccccccCCccCCCcceeecccccccCcHHHHHHHHhcCCcee-----eeeccCCCC
Confidence 99999999886421 13555444433211111 112111 234699999999999 77777 344444432
Q ss_pred eee--------eeecccCCCCCceEEEe
Q psy11935 903 RKT--------ESVDVLDAVGSNIIVST 922 (1334)
Q Consensus 903 ~~~--------~s~c~~C~~gC~i~v~v 922 (1334)
... ...|..|..-|++=+-+
T Consensus 175 ~i~~~~~~~~~~~~cg~cv~~CP~GAl~ 202 (776)
T PRK09129 175 EITTYVGKTVDSELSGNMIDLCPVGALT 202 (776)
T ss_pred EEcCCCCCCccCcccCCchhhCCccccc
Confidence 211 23466666677665443
No 80
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=99.67 E-value=6.7e-17 Score=178.76 Aligned_cols=121 Identities=21% Similarity=0.297 Sum_probs=94.1
Q ss_pred hhhhhccCC-CCcccccc-----------eeecCC-CcccccccccCCCCcEEEcCCHHHHHHHHHHHHHHhhCCCCCCc
Q psy11935 765 VTRQRSWGL-IPSRVFLQ-----------SINRHW-IGPVAACAMPVMKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCP 831 (1334)
Q Consensus 765 ~~~~~~~~~-ip~lc~~~-----------~v~~~~-~~~~~aC~~~v~~gm~i~t~s~~~r~~r~~~~~~ll~~h~~~C~ 831 (1334)
++++..+|+ ||++|+++ .|++++ .++++||.|+|++||+|.|+++.++.+|+.++++|+++||.+|+
T Consensus 22 l~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~g~~~~~~aC~t~v~~Gm~v~t~~~~~~~~rk~~l~~ll~~h~~~C~ 101 (234)
T PRK07569 22 LEAAREAGIPIPTLCHLDGLSDVGACRLCLVEIEGSNKLLPACVTPVAEGMVVQTNTPRLQEYRRMIVELLFAEGNHVCA 101 (234)
T ss_pred HHHHHHcCCCCCcCcCCCCCCCCCccCCcEEEECCCCccccCcCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhccccCc
Confidence 689999999 99999965 677643 35788999999999999999999999999999999999999999
Q ss_pred ccccCCccchhh-hhcccCccccccCCCCCceeccccc----ccccccccccccccccc
Q psy11935 832 ICDQGGECDLQD-QSMAFGNDLGTTGRGSDMQVGTYVE----KLFLSELSGNVIDLCPV 885 (1334)
Q Consensus 832 ~C~~~g~c~~~~-~e~~g~~~~~~~~rg~~~~i~~~~~----~~~~~~~cg~cv~~Cpv 885 (1334)
.|+++|+|.++. ....|+....+........++.... .+-.|+.||+|+.+||.
T Consensus 102 ~C~~~g~C~Lq~~a~~~g~~~~~~~~~~~~~~~d~s~~~i~~d~~kCi~Cg~Cv~aC~~ 160 (234)
T PRK07569 102 VCVANGNCELQDLAIEVGMDHVRFPYLFPRRPVDISHPRFGIDHNRCVLCTRCVRVCDE 160 (234)
T ss_pred ccCCCCCcHHHHHHHHhCCCCcccCcccCCcccccCCCcEEeehhhCcCccHHHHHHHH
Confidence 999999998653 2224655444444333333332221 12359999999999993
No 81
>KOG2282|consensus
Probab=99.65 E-value=4.4e-17 Score=183.37 Aligned_cols=120 Identities=47% Similarity=0.801 Sum_probs=97.8
Q ss_pred hhhhhhccCC-CCcccccc-----------eeec-CCCcccccccccCCCCcEEEcCCHHHHHHHHHHHHHHhhCCCCCC
Q psy11935 764 RVTRQRSWGL-IPSRVFLQ-----------SINR-HWIGPVAACAMPVMKGWRVKTNSEMTRRAREGVMEFLLVNHPLDC 830 (1334)
Q Consensus 764 ~~~~~~~~~~-ip~lc~~~-----------~v~~-~~~~~~~aC~~~v~~gm~i~t~s~~~r~~r~~~~~~ll~~h~~~C 830 (1334)
-++++...|+ ||..|||. .||+ +..+|++||.+||.+||.|.|+|+.++.+|.++|||||.|||++|
T Consensus 50 vlqac~~~gv~iprfcyh~rlsvagncrmclvevekspkpva~campvm~g~~iktns~~~kkaregvmefll~nhpldc 129 (708)
T KOG2282|consen 50 VLQACAKVGVDIPRFCYHERLSVAGNCRMCLVEVEKSPKPVAACAMPVMKGWKIKTNSDKSKKAREGVMEFLLMNHPLDC 129 (708)
T ss_pred HHHHHHHhCCCcchhhhhhhhhhccceeEEEEEeccCCCcchhhcccccCCceeecCchHHHHHHHHHHHHHHhCCCCCC
Confidence 3678888889 99999998 6776 556899999999999999999999999999999999999999999
Q ss_pred cccccCCccchhhhhcc-cCccccccCCC---CCceecccccccc-cccccccccccc
Q psy11935 831 PICDQGGECDLQDQSMA-FGNDLGTTGRG---SDMQVGTYVEKLF-LSELSGNVIDLC 883 (1334)
Q Consensus 831 ~~C~~~g~c~~~~~e~~-g~~~~~~~~rg---~~~~i~~~~~~~~-~~~~cg~cv~~C 883 (1334)
+.|+.+|+|.++...++ |.+.-+|..+. .+.-|||.....+ .|+.|.+||+.-
T Consensus 130 picdqggecdlqdq~m~fgsdr~rf~~~kravedknigplvktimtrciqctrcvrfa 187 (708)
T KOG2282|consen 130 PICDQGGECDLQDQAMAFGSDRSRFTEGKRAVEDKNIGPLVKTIMTRCIQCTRCVRFA 187 (708)
T ss_pred CccCCCCcCcchHhHhhhcCchhhhhhhhhhhhcCccchHHHHHHHHHHhHHHHHHHH
Confidence 99999999999887655 55554454432 1234555444322 599999999976
No 82
>KOG0996|consensus
Probab=99.65 E-value=8e-10 Score=137.04 Aligned_cols=57 Identities=9% Similarity=0.002 Sum_probs=41.3
Q ss_pred ccCCeEeeeccccccchhhhHHHHhhhhch----hhhHHHH---HHHHhhCCC-CCceEeccccc
Q psy11935 323 DMRKYIEMQYSMFSADSTHMNIVERDIPNS----ADDMRKY---IEMLLEKPP-GNPVSDLEAEV 379 (1334)
Q Consensus 323 ~~~G~iG~A~dLV~~d~~~~~Ii~~LLG~t----~e~ld~A---~~iak~~~~-r~RIVTLdGdv 379 (1334)
..|||.|-..||=.+|++|...|+..-++- |++.+.| +..-++++- |-..+.||---
T Consensus 614 ~i~Gf~GRLGDLg~Id~kYDvAIsTac~~LdyiVVdt~e~aq~cI~fl~~~nLgraTFi~LDki~ 678 (1293)
T KOG0996|consen 614 RIPGFYGRLGDLGAIDEKYDVAISTACARLDYIVVDTIETAQECINFLKKNNLGRATFIILDKIK 678 (1293)
T ss_pred CCCccccccccccccchHHHHHHHHhccccceEEeccHHHHHHHHHHHHHcCCCceeEEehHhhh
Confidence 468999999999999999999999876664 7777544 555565544 45566666433
No 83
>PF06470 SMC_hinge: SMC proteins Flexible Hinge Domain; InterPro: IPR010935 This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins. The hinge region is responsible for formation of the DNA interacting dimer. It is also possible that the precise structure of it is an essential determinant of the specificity of the DNA-protein interaction [].; GO: 0005515 protein binding, 0005524 ATP binding, 0051276 chromosome organization, 0005694 chromosome; PDB: 2WD5_A 1GXL_C 1GXK_A 1GXJ_A 3NWC_B 3L51_A.
Probab=99.60 E-value=8.1e-16 Score=152.88 Aligned_cols=107 Identities=10% Similarity=0.010 Sum_probs=98.0
Q ss_pred ccccccccccccccccccc------cccccccccCCCcChHHHHHHhhhcCCCccceechhhhh-ccCccch--hccCCe
Q psy11935 257 SLIDSTTDTNCPVTQQYVP------SSNQQYAPSSNQQYSIPTSNINQQYSMFSADSTHMNIVE-RDIPNSA--DDMRKY 327 (1334)
Q Consensus 257 ~gI~G~Vaeli~Vp~~Y~~------G~alQnIVv~~e~~Ak~aI~~LK~~~~GRaTFLPl~~Ik-r~l~~~~--~~~~G~ 327 (1334)
+||+|.|+|+|+|+++|+. |+.+++|||++.++|..+|++|+.++.||+||+|++.++ +...... ...+|.
T Consensus 2 ~gv~G~l~dli~v~~~~~~Ave~~LG~~l~~iVV~~~~~a~~~i~~l~~~~~gr~~~i~l~~~~~~~~~~~~~~~~~~~~ 81 (120)
T PF06470_consen 2 PGVLGRLADLIEVDPKYEKAVEAALGGRLQAIVVEDEETAKKIIEFLKENKLGRATFIPLDKIRSRSSASSADQIRPPGG 81 (120)
T ss_dssp TTEEEEGGGSEEESGGGHHHHHHHHGGGGGSEEESSHHHHHHHHHHHHHTTSCEEEEEETTTTGGGTTSCCCGGHHSTTS
T ss_pred CCeeeeHHhceecCHHHHHHHHHHHHHhhceEEECcHHHHHHHHHHHhhccCCeEEEEECccccccccccchhhccCCcc
Confidence 5999999999999999999 999999999999999999999999999999999999999 5543111 126799
Q ss_pred Eeeecccccc-chhhhHHHHhhhhch--hhhHHHHHHHH
Q psy11935 328 IEMQYSMFSA-DSTHMNIVERDIPNS--ADDMRKYIEML 363 (1334)
Q Consensus 328 iG~A~dLV~~-d~~~~~Ii~~LLG~t--~e~ld~A~~ia 363 (1334)
.+.+.|+|+| |++|.+++.++||++ ++|++.|.++|
T Consensus 82 ~~~l~d~i~~~d~~~~~~~~~llg~~~vv~~l~~A~~la 120 (120)
T PF06470_consen 82 AGPLIDLIEFPDEEYRPALEFLLGDVVVVDDLEEARKLA 120 (120)
T ss_dssp EEEGGGGEEESCGGGHHHHHHHHTTEEEESSHHHHHHHH
T ss_pred hHHHHHhcccCcHHHHHHHHHHcCCEEEECCHHHHHHhC
Confidence 9999999999 999999999999999 99999999986
No 84
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=99.59 E-value=1.4e-15 Score=199.28 Aligned_cols=125 Identities=23% Similarity=0.402 Sum_probs=95.1
Q ss_pred hhhhhccCC-CCcccccc-----------eeec------CCCcccccccccCCCCcEEEcCCHHHHHHHHHHHHHHhhCC
Q psy11935 765 VTRQRSWGL-IPSRVFLQ-----------SINR------HWIGPVAACAMPVMKGWRVKTNSEMTRRAREGVMEFLLVNH 826 (1334)
Q Consensus 765 ~~~~~~~~~-ip~lc~~~-----------~v~~------~~~~~~~aC~~~v~~gm~i~t~s~~~r~~r~~~~~~ll~~h 826 (1334)
++++..+|| ||++|||+ .|+. ...++++||+|||.+||+|.|+|+.++.+|+.++||||++|
T Consensus 20 l~a~~~~gi~ip~~C~~~~~~~~G~C~~C~v~v~~g~~~~~~~~~~aC~~~v~~gm~v~t~~~~~~~~r~~~~e~ll~~h 99 (847)
T PRK08166 20 LEACLSLGIDIPYFCWHPALGSVGACRQCAVKQYQNPEDTRGRLVMSCMTPATDGTFISIDDPEAKAFRASVVEWLMTNH 99 (847)
T ss_pred HHHHHHcCCCCCccccCCCCCCCCccCCCeEEEeecCccCCCCcccCcCCCCCCCCEEEeCCHHHHHHHHHHHHHHHhcC
Confidence 689999999 99999985 5554 22368899999999999999999999999999999999999
Q ss_pred CCCCcccccCCccchhhhh-cccCccccccC--CCCCc-eeccccc-ccccccccccccccc----cccccc
Q psy11935 827 PLDCPICDQGGECDLQDQS-MAFGNDLGTTG--RGSDM-QVGTYVE-KLFLSELSGNVIDLC----PVGALT 889 (1334)
Q Consensus 827 ~~~C~~C~~~g~c~~~~~e-~~g~~~~~~~~--rg~~~-~i~~~~~-~~~~~~~cg~cv~~C----pvGAl~ 889 (1334)
|.+|+.|+++|+|.++..- ..|...-+|.. |.... ..+++.. .+..||.||+||++| .+++|.
T Consensus 100 p~dc~~c~~~g~c~lq~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~d~~rCi~C~rCVr~c~e~~g~~~l~ 171 (847)
T PRK08166 100 PHDCPVCEEGGNCHLQDMTVMTGHSFRRYRFTKRTHRNQDLGPFISHEMNRCIACYRCVRYYKDYAGGTDLG 171 (847)
T ss_pred CCCCCccCCCCCchHHHHHHHhCCCCccCCCcCccccccCCCCceEecCCcCccccHHHHHHHhhcCcceEE
Confidence 9999999999999986522 23655444432 21111 1122211 233699999999999 566663
No 85
>PRK02224 chromosome segregation protein; Provisional
Probab=99.56 E-value=5.5e-09 Score=139.38 Aligned_cols=162 Identities=13% Similarity=0.125 Sum_probs=74.5
Q ss_pred hhhHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHhhHHHHH
Q psy11935 402 PALYTKTVRSVTLKISKEKIESLERNLQTETQRSRKLEEELQDTRQTCEE----VVRKEVSIVTVTLFLERLRSSHSKRS 477 (1334)
Q Consensus 402 k~ei~~L~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~e----~~~~~~~~~~l~~~~~~~~~~~~~~~ 477 (1334)
..++..+.... +.+...+......+.........+++++..++..+.+ ...++.....+..++..+...+..+.
T Consensus 508 ~~~l~~l~~~~--~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 585 (880)
T PRK02224 508 EDRIERLEERR--EDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELK 585 (880)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 44445555554 4444444444455555555555555555555444441 22233334444444444444444444
Q ss_pred hhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Q psy11935 478 KNADSLVRLQKAQ-DEIQTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQLDSAEL-----TLHREFQQKEKTIVEN 551 (1334)
Q Consensus 478 ~e~~~l~~~~~~~-~~l~~l~~~~~~l~~~i~~~~~~~~~~~l~~~l~~~~~~~a~le~-----~~~~~~~~~~~~~~~~ 551 (1334)
.++..+. ...++ ..+.++...+..++..+..++... +.+++++.+++.++..++. .+..+...+.++...
T Consensus 586 ~~~~~le-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~--~~~~~~l~~~r~~i~~l~~~~~~~~~e~l~~~~~~~~~~- 661 (880)
T PRK02224 586 ERIESLE-RIRTLLAAIADAEDEIERLREKREALAELN--DERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEY- 661 (880)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-
Confidence 4444444 23333 444445455554444444444332 2455555555555555532 223344444444444
Q ss_pred HHHHHHHHhhchhhhhhhh
Q psy11935 552 AAKQLKQISEKPGATKLML 570 (1334)
Q Consensus 552 ~~~~~~~~l~~~~~ei~~~ 570 (1334)
+..+...+..+..++..+
T Consensus 662 -~~~l~~~l~~~~~~~~~l 679 (880)
T PRK02224 662 -LEQVEEKLDELREERDDL 679 (880)
T ss_pred -HHHHHHHHHHHHHHHHHH
Confidence 444444444444444444
No 86
>KOG0979|consensus
Probab=99.50 E-value=9.6e-09 Score=126.32 Aligned_cols=116 Identities=12% Similarity=0.152 Sum_probs=92.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhHhhh--------HHHHHHHHHhhhHH
Q psy11935 1 QKAQDEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQT------LLAKSASIKTE--------LREFYQTQLNNNQK 66 (1334)
Q Consensus 1 ~~~l~~~~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~------l~~~ie~l~~~--------~~er~~~~~~~~~~ 66 (1334)
|.+|.+++....+++.....-...++.+++.++.+..++++ +.+.|+-++.. ..+.+........+
T Consensus 180 h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r 259 (1072)
T KOG0979|consen 180 HIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDR 259 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHH
Confidence 45788889999999999999999999999999999988887 44455555443 67888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 67 AQDEIQTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQLDSAELTLHRE 118 (1334)
Q Consensus 67 l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 118 (1334)
++.++..+.+...+++.....+ +.+.++ ..+++......+.+...++.+.
T Consensus 260 ~k~~~r~l~k~~~pi~~~~eeL-e~~~~e-t~~~~s~~~~~~~e~~~k~~~~ 309 (1072)
T KOG0979|consen 260 AKKELRKLEKEIKPIEDKKEEL-ESEKKE-TRSKISQKQRELNEALAKVQEK 309 (1072)
T ss_pred HHHHHHHHHHhhhhhhhhhhhH-HhHHHh-HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988888 777777 7777777777776666654433
No 87
>PF10588 NADH-G_4Fe-4S_3: NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; InterPro: IPR019574 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the G subunit (one of 14 subunits, A to N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This family does not contain related subunits from formate dehydrogenase complexes. This entry represents the iron-sulphur binding domain of the G subunit.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3.
Probab=99.44 E-value=3.4e-14 Score=109.91 Aligned_cols=41 Identities=56% Similarity=1.191 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCchhhhHHHhCCCCCcc
Q psy11935 710 REGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRF 750 (1334)
Q Consensus 710 r~~~~~~ll~~hp~~C~~c~~~g~c~lq~~~~~~g~~~~~~ 750 (1334)
|+.+|++||+|||+|||+|+++|+|+||+++..||+...+|
T Consensus 1 Rr~~lelll~~H~~dC~~C~~~G~CeLQ~~~~~~gv~~~~f 41 (41)
T PF10588_consen 1 RRTVLELLLANHPLDCPTCDKNGNCELQDLAYEYGVDEQRF 41 (41)
T ss_dssp -HHHHHHHHTT----TTT-TTGGG-HHHHHHHHH-S-----
T ss_pred CHHHHHHHHhCCCCcCcCCCCCCCCHHHHHHHHhCCCcCCC
Confidence 79999999999999999999999999999999999988876
No 88
>KOG0161|consensus
Probab=99.43 E-value=3.8e-08 Score=132.23 Aligned_cols=103 Identities=17% Similarity=0.212 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh---HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 11 LAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE---LREFYQTQLNNNQKAQDEIQTLLAKSASIKTELRE 87 (1334)
Q Consensus 11 ~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~---~~er~~~~~~~~~~l~~~i~~l~~~~~~~~~~l~~ 87 (1334)
+...+.+...+..+..++++.++.+.+.+.++...+.+++.+ ...+++++..++..+.+.+..+..+...+++.+..
T Consensus 917 ~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~ 996 (1930)
T KOG0161|consen 917 LEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRE 996 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333344444444444444444444444 55566666666666666666555555555555555
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy11935 88 FYQTQLNNNVKEKLKEFQTQLDSAELTL 115 (1334)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l 115 (1334)
+ ...+.. .+.+..++.+....++..+
T Consensus 997 l-~~~l~~-~eek~~~l~k~~~kle~~l 1022 (1930)
T KOG0161|consen 997 L-QDDLQA-EEEKAKSLNKAKAKLEQQL 1022 (1930)
T ss_pred H-HHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4 444444 4444444444333333333
No 89
>PRK03918 chromosome segregation protein; Provisional
Probab=99.42 E-value=3.3e-07 Score=122.61 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy11935 430 TETQRSRKLEEELQDTRQTCE 450 (1334)
Q Consensus 430 ~l~~~~~~l~~~l~~~~~~~~ 450 (1334)
++..++.++...+..+...+.
T Consensus 529 ~l~~~~~~l~~~l~~l~~~l~ 549 (880)
T PRK03918 529 KLKEKLIKLKGEIKSLKKELE 549 (880)
T ss_pred HHHHHHHHHHhHHHHHHHHHH
Confidence 333333333333333333333
No 90
>KOG0161|consensus
Probab=99.42 E-value=1.4e-07 Score=126.99 Aligned_cols=97 Identities=12% Similarity=0.070 Sum_probs=47.3
Q ss_pred hhhhhHHHHHHHHHHhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 142 FKQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVES 221 (1334)
Q Consensus 142 ~l~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 221 (1334)
.+..++......+. .+...+++++..+.....++..+..++++....+.++...++++...+.++..+++........
T Consensus 1045 kle~el~~~~e~~~--~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K 1122 (1930)
T KOG0161|consen 1045 KLEGELKDLQESIE--ELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAK 1122 (1930)
T ss_pred HHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444 3344445555555555555555555555555555555555555555555555555444444444
Q ss_pred HHHHHHHHHHHHhhhhhhhh
Q psy11935 222 VMQSQLQQAIHMITSDVTHL 241 (1334)
Q Consensus 222 ~~~~~~~~~~~~~~~~~srl 241 (1334)
+ +.+..++..++..+..++
T Consensus 1123 ~-ek~r~dL~~ele~l~~~L 1141 (1930)
T KOG0161|consen 1123 A-ERQRRDLSEELEELKEEL 1141 (1930)
T ss_pred H-HHHHHHHHHHHHHHHHHH
Confidence 4 444444444444444333
No 91
>PRK02224 chromosome segregation protein; Provisional
Probab=99.41 E-value=2.3e-07 Score=123.93 Aligned_cols=30 Identities=10% Similarity=0.091 Sum_probs=11.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy11935 54 REFYQTQLNNNQKAQDEIQTLLAKSASIKT 83 (1334)
Q Consensus 54 ~er~~~~~~~~~~l~~~i~~l~~~~~~~~~ 83 (1334)
...+..+...+..++.++..++.++..+..
T Consensus 205 ~~~l~~~~~~l~el~~~i~~~~~~~~~l~~ 234 (880)
T PRK02224 205 HERLNGLESELAELDEEIERYEEQREQARE 234 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444433333333333333
No 92
>KOG0933|consensus
Probab=99.37 E-value=2.7e-07 Score=113.30 Aligned_cols=192 Identities=13% Similarity=0.068 Sum_probs=93.6
Q ss_pred ceEecccccccCCCCcccccc-cCCCCCcccchhhHHHHHHHhhHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q psy11935 371 PVSDLEAEVKDSAGPMTSFLE-SSVTSDIFNEPALYTKTVRSVTLKISKEKIESLE---RNLQTETQRSRKLEEELQDTR 446 (1334)
Q Consensus 371 RIVTLdGdvin~GGSiTGGs~-~~~~~~ll~Rk~ei~~L~~~~~~~~~~~~~~~l~---~~~~~l~~~~~~l~~~l~~~~ 446 (1334)
.|++..|-+ .|||-.+|.. -..-.-+-.+..++...+.++ ..++.++..++ .+...+++++.-...++....
T Consensus 653 DV~dP~Gtl--TGGs~~~~a~~L~~l~~l~~~~~~~~~~q~el--~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~ 728 (1174)
T KOG0933|consen 653 DVYDPSGTL--TGGSRSKGADLLRQLQKLKQAQKELRAIQKEL--EALERELKSLEAQSQKFRDLKQQLELKLHELALLE 728 (1174)
T ss_pred ceeCCCCcc--cCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788877 9999888873 122223334444555555555 55544444433 334444444444444444444
Q ss_pred HHHH---------HHHHHHHhHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q psy11935 447 QTCE---------EVVRKEVSIVTVTLFLERLRSSHSKRSKNADSLVRLQKAQ-----DEIQTLLAKSASIKTELREFYQ 512 (1334)
Q Consensus 447 ~~~~---------e~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~-----~~l~~l~~~~~~l~~~i~~~~~ 512 (1334)
..++ ++..+..++...+.++....+.+..-+.....++...++. ..+.+++.++...+..+++...
T Consensus 729 ~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~ 808 (1174)
T KOG0933|consen 729 KRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSK 808 (1174)
T ss_pred HHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 3333333344444444444444444444444444444433 5666666666666666655554
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhh
Q psy11935 513 TQLNNNVKEKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQISEKPGATKLML 570 (1334)
Q Consensus 513 ~~~~~~l~~~l~~~~~~~a~le~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ei~~~ 570 (1334)
.+.. -......+..+...++..+.+.++++..+..+ ++.+..++..+...+...
T Consensus 809 ~~ek--~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~--~~~l~~e~~~l~~kv~~~ 862 (1174)
T KOG0933|consen 809 ELEK--RENEYERLQLEHEELEKEISSLKQQLEQLEKQ--ISSLKSELGNLEAKVDKV 862 (1174)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhH
Confidence 4443 22333334444444444444444444444444 444444444444333333
No 93
>KOG0250|consensus
Probab=99.34 E-value=1.1e-06 Score=110.21 Aligned_cols=288 Identities=10% Similarity=0.111 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh--HHHHHHHHHhh-----hHHHHHHHHHHHH
Q psy11935 4 QDEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE--LREFYQTQLNN-----NQKAQDEIQTLLA 76 (1334)
Q Consensus 4 l~~~~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~--~~er~~~~~~~-----~~~l~~~i~~l~~ 76 (1334)
|.++...+....+.+...+..+...++.+..++.++.+....+..++.. ..+++.+++.. ......+++.+..
T Consensus 209 L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~ 288 (1074)
T KOG0250|consen 209 LEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEE 288 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455555555555555555555555555554444444443 44444443332 2334455555555
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHH
Q psy11935 77 KSASIKTELREFYQTQLNNNVKEKLKEFQTQLDSAELTLHREF---QQKEKTIVENAAKQLKQISENEFKQKEKTIVENA 153 (1334)
Q Consensus 77 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~---~~~~~~i~~~~~~~ie~~~~~~~l~n~~~~~~~~ 153 (1334)
++..++++...+ ++++.. ...+..++..++.+.+.++.... ..-..+++..+...-+...+..+++.++...++.
T Consensus 289 ~i~~~qek~~~l-~~ki~~-~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~ 366 (1074)
T KOG0250|consen 289 EIKKKQEKVDTL-QEKIEE-KQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENS 366 (1074)
T ss_pred HHHHHHHHHHHH-HHHHHH-HHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555 555555 55555555555555555555554 3455666666666666666666666666666666
Q ss_pred HHHhhhhhcchhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 154 AKQLKQISEKPGATKLMLDFKAKC-EVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQAIH 232 (1334)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (1334)
++ ........+.+.+..++++. +.+..++.+...+++.++.+++.++..+..|..++++...++... +.+......
T Consensus 367 i~--~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~-~ee~~~i~~ 443 (1074)
T KOG0250|consen 367 IR--KLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEE-EEEKEHIEG 443 (1074)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHH
Confidence 66 66555666666666666666 555566666666666666666666666666666666666666666 555544444
Q ss_pred HhhhhhhhhhH---HHHHhccCCCCCCccccc-ccccccc-c---cccccc---cccccccccCCCcChHHHHHHh
Q psy11935 233 MITSDVTHLHT---SKESLATRQPSEQSLIDS-TTDTNCP-V---TQQYVP---SSNQQYAPSSNQQYSIPTSNIN 297 (1334)
Q Consensus 233 ~~~~~~srl~~---Vk~vL~~~~~~~~~gI~G-~Vaeli~-V---p~~Y~~---G~alQnIVv~~e~~Ak~aI~~L 297 (1334)
.+..+.-+.+. ....|+..+..+++ .+| -|.+|+. + -.+|.+ |.-=++|-+.+..||...-+-|
T Consensus 444 ~i~~l~k~i~~~~~~l~~lk~~k~dkvs-~FG~~m~~lL~~I~r~~~~f~~~P~GPlG~~Vtl~~~KWa~aIE~~L 518 (1074)
T KOG0250|consen 444 EILQLRKKIENISEELKDLKKTKTDKVS-AFGPNMPQLLRAIERRKRRFQTPPKGPLGKYVTLKEPKWALAIERCL 518 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhh-hcchhhHHHHHHHHHHHhcCCCCCCCCccceeEecCcHHHHHHHHHH
Confidence 44444333333 33344333322222 223 2222221 1 112222 8888899999999998776655
No 94
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.31 E-value=4.2e-06 Score=114.01 Aligned_cols=57 Identities=11% Similarity=0.186 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhccCC
Q psy11935 195 DIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQAIHMITSDVTHLHTSKESLATRQ 252 (1334)
Q Consensus 195 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~srl~~Vk~vL~~~~ 252 (1334)
.+........+..++.+..++....... ...+....+.+....+++..+...|...+
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a-~~~l~~~~~~~~~~~~~~~~l~~~L~p~~ 538 (1201)
T PF12128_consen 482 QEQQNQAQQAVEELQAEEQELRKERDQA-EEELRQARRELEELRAQIAELQRQLDPQK 538 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 3334444444444444444555555555 55556666666666666666666665544
No 95
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.29 E-value=1.7e-12 Score=165.26 Aligned_cols=100 Identities=29% Similarity=0.399 Sum_probs=82.8
Q ss_pred CcEEEEECCEEEEeCCCCcchhhhhhhcCCCCCCCEEEcCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCchhhhHHH
Q psy11935 663 EKFEVFIDDKKVMVDPGTTVLQPVAACAMPVMKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMA 742 (1334)
Q Consensus 663 ~~~~~~idg~~~~v~~g~til~~~~ac~~~~~~gm~v~t~s~~~~~~r~~~~~~ll~~hp~~C~~c~~~g~c~lq~~~~~ 742 (1334)
.||+|+|||++|+||+|+|||+...+ .|..|+| |+.||.-| .
T Consensus 2 ~~v~~~idg~~~~~~~g~ti~~a~~~------~g~~ip~----------------~c~~~~~~----------------~ 43 (652)
T PRK12814 2 NTISLTINGRSVTAAPGTSILEAAAS------AGITIPT----------------LCFHQELE----------------A 43 (652)
T ss_pred CeEEEEECCEEEEeCCcCcHHHHHHH------cCCcccc----------------ccCCCCCC----------------C
Confidence 47999999999999999999996543 3666665 44454333 5
Q ss_pred hCCCCCcccccccCCCCCccchhhhhhccCCCCcccccceeecCCCcccccccccCCCCcEEEcCCHHHHHHHHHHHHHH
Q psy11935 743 FGSDRSRFTDIDFSGKSGTYTRVTRQRSWGLIPSRVFLQSINRHWIGPVAACAMPVMKGWRVKTNSEMTRRAREGVMEFL 822 (1334)
Q Consensus 743 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~lc~~~~v~~~~~~~~~aC~~~v~~gm~i~t~s~~~r~~r~~~~~~l 822 (1334)
+|.|+.|.+++. |++ ++++||+|+|++||+|.|+++.++.+|+.+|++|
T Consensus 44 ~g~C~~C~V~v~--g~~-----------------------------~~~~aC~t~~~~Gm~v~t~~~~~~~~r~~~le~l 92 (652)
T PRK12814 44 TGSCWMCIVEIK--GKN-----------------------------RFVPACSTAVSEGMVIETENAELHAMRRQSLERL 92 (652)
T ss_pred ccccceeEEEEC--CCc-----------------------------ceecCcCCCCCCCCEEEeCcHHHHHHHHHHHHHH
Confidence 889999988753 543 5789999999999999999999999999999999
Q ss_pred hhCCCCCCc
Q psy11935 823 LVNHPLDCP 831 (1334)
Q Consensus 823 l~~h~~~C~ 831 (1334)
|++|+.+|.
T Consensus 93 ~~~~c~~C~ 101 (652)
T PRK12814 93 IEQHCGDCL 101 (652)
T ss_pred HhhcccccC
Confidence 999988885
No 96
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.25 E-value=1.4e-05 Score=108.85 Aligned_cols=36 Identities=11% Similarity=0.050 Sum_probs=14.8
Q ss_pred ccCeEEEEcCCcccc-chhHHHHHHHHHhhCCCeEEE
Q psy11935 1050 EADLILLIGTNPRFE-APLFNARIRKGYLTNELDVAY 1085 (1334)
Q Consensus 1050 ~ad~Il~~G~np~~~-~p~~~~rir~a~~~~g~kiiv 1085 (1334)
.+|+.|.|=.|-..+ ||.-...|.++...++..|+.
T Consensus 1144 ~~~~~ihwpiDEiG~L~~~Nv~~l~~~~~~nnI~li~ 1180 (1201)
T PF12128_consen 1144 DADFRIHWPIDEIGKLHPNNVKKLLDMCNSNNISLIS 1180 (1201)
T ss_pred CCCeEEEeeehhhccCChHHHHHHHHHHHhCCceEEE
Confidence 445555553332222 333333444444444433333
No 97
>PRK04863 mukB cell division protein MukB; Provisional
Probab=99.25 E-value=2.4e-06 Score=115.43 Aligned_cols=45 Identities=7% Similarity=0.032 Sum_probs=34.2
Q ss_pred hccCCeEeeeccccc-cchhhhHHHHhhhhch-----hhhHHHHHHHHhhCCC
Q psy11935 322 DDMRKYIEMQYSMFS-ADSTHMNIVERDIPNS-----ADDMRKYIEMLLEKPP 368 (1334)
Q Consensus 322 ~~~~G~iG~A~dLV~-~d~~~~~Ii~~LLG~t-----~e~ld~A~~iak~~~~ 368 (1334)
...+|++ .++|++ ++.+|.+.++..||.. |+|++.|...-.-...
T Consensus 680 ~~~~Gvl--vsel~~~v~~~~~~~~~A~lg~~~~~iVv~d~~~A~~ai~~L~~ 730 (1486)
T PRK04863 680 ERFGGVL--LSEIYDDVSLEDAPYFSALYGPARHAIVVPDLSDAAEQLAGLED 730 (1486)
T ss_pred HhcCCee--hhHhhhccCcchHHHHHHHHHhhhCeEEeCCHHHHHHHHHhccC
Confidence 4578888 678888 8888999999999654 9999777765554433
No 98
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.23 E-value=1.7e-06 Score=119.18 Aligned_cols=44 Identities=5% Similarity=0.188 Sum_probs=24.1
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 405 YTKTVRSVTLKISKEKIESLERNLQTETQRSRKLEEELQDTRQTCE 450 (1334)
Q Consensus 405 i~~L~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~ 450 (1334)
+++++.++ ..++.++..+...+..+..+...++.++..++.++.
T Consensus 824 ~~ele~ei--~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~ 867 (1311)
T TIGR00606 824 VQQVNQEK--QEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTN 867 (1311)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555 555555555555555555555555555555544444
No 99
>PF04879 Molybdop_Fe4S4: Molybdopterin oxidoreductase Fe4S4 domain; InterPro: IPR006963 The molybdopterin oxidoreductase Fe4S4 domain is found in a number of reductase/dehydrogenase families, which include the periplasmic nitrate reductase precursor and the formate dehydrogenase alpha chain [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2VPZ_A 2VPY_A 2VPW_A 2VPX_A 2NYA_A 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 ....
Probab=99.23 E-value=8.3e-12 Score=105.03 Aligned_cols=54 Identities=26% Similarity=0.370 Sum_probs=44.7
Q ss_pred ceeeeeecccCCCCCceEEEeeCCEEEEecCCCCCCCCcccccccccccccccc
Q psy11935 902 TRKTESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGLK 955 (1334)
Q Consensus 902 ~~~~~s~c~~C~~gC~i~v~v~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l~ 955 (1334)
+++++|+|++|+.||+|.+.+++|+|++|.|++++|+|.|++|+||+|+++.++
T Consensus 1 mk~~~t~C~~C~~gC~i~~~v~~g~i~~v~g~~~~p~~~g~lC~KG~~~~~~v~ 54 (55)
T PF04879_consen 1 MKTVPTVCPYCSSGCGIDVYVKDGKIVKVEGDPDHPINQGRLCPKGRFGYQFVY 54 (55)
T ss_dssp SEEEEEE-SSCTT--EEEEEEETTEEEEEEE-TTSTTTTT---HHHHCGGGCCC
T ss_pred CeEEeeECcCCcCCCcEEEEEecCceEEEECCCCCCCCCccCCHhHhHHHHhhc
Confidence 578999999999999999999999999999999999999999999999999774
No 100
>KOG4674|consensus
Probab=99.20 E-value=3.5e-06 Score=111.69 Aligned_cols=98 Identities=19% Similarity=0.141 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 120 QQKEKTIVENAAKQLKQISENEFKQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLK 199 (1334)
Q Consensus 120 ~~~~~~i~~~~~~~ie~~~~~~~l~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~~~l~ 199 (1334)
..+++.|+.+...+...-.+++.|++++..+..... ........+...+..++..+...+..+.....+++..+.
T Consensus 954 ~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~-----~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~ 1028 (1822)
T KOG4674|consen 954 LELEAKIESLHKKITSLEEELSELEKEIENLREELE-----LSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIE 1028 (1822)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443333 122233344445555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 200 ETNHLLKEESKKRELMAKKVESV 222 (1334)
Q Consensus 200 ~l~~~~~~~~~~~~~~~~~~~~~ 222 (1334)
.++..+..........+.+++..
T Consensus 1029 ~~k~dl~~~~~~~~~a~~~Ye~e 1051 (1822)
T KOG4674|consen 1029 DLQNDLKTETEQLRKAQSKYESE 1051 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555544444444444444
No 101
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.19 E-value=2.8e-06 Score=117.01 Aligned_cols=31 Identities=6% Similarity=0.005 Sum_probs=16.1
Q ss_pred cccccchhhhHHHHhhhhch--hhhHHHHHHHH
Q psy11935 333 SMFSADSTHMNIVERDIPNS--ADDMRKYIEML 363 (1334)
Q Consensus 333 dLV~~d~~~~~Ii~~LLG~t--~e~ld~A~~ia 363 (1334)
.|......|..+...+-... ..-+..++..|
T Consensus 640 ~L~~~~~~l~~~~~~~~~~~~~~~~~~k~ie~a 672 (1311)
T TIGR00606 640 DLERLKEEIEKSSKQRAMLAGATAVYSQFITQL 672 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433322 45558888888
No 102
>KOG4674|consensus
Probab=99.13 E-value=7.7e-05 Score=99.46 Aligned_cols=206 Identities=13% Similarity=0.148 Sum_probs=105.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHhhHHHHHhhHHHHHHHHH--
Q psy11935 415 KISKEKIESLERNLQTETQRSRKLEEELQDTRQTCE----EVVRKEVSIVTVTLFLERLRSSHSKRSKNADSLVRLQK-- 488 (1334)
Q Consensus 415 ~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~----e~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~-- 488 (1334)
.+..+.+..++++++.+..++..++.++..+..... ++..+...++.++.+...+..+-..+...+..-+....
T Consensus 650 ~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~ 729 (1822)
T KOG4674|consen 650 KEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTL 729 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566788888888888888888877776666 66666666777777776666554444443333322221
Q ss_pred --HH----HHHHHHHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH
Q psy11935 489 --AQ----DEIQTLLAKSASIKTELREFYQTQLN-----NNVKEKLKEFQTQLDSAELTL-----------HREFQQKEK 546 (1334)
Q Consensus 489 --~~----~~l~~l~~~~~~l~~~i~~~~~~~~~-----~~l~~~l~~~~~~~a~le~~~-----------~~~~~~~~~ 546 (1334)
++ .++..++.++..++.+-.-+...... +.+-.+...++.-+..++... .....++..
T Consensus 730 s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~e 809 (1822)
T KOG4674|consen 730 SQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKE 809 (1822)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 55666666666665444333222222 222222222222222222222 122233333
Q ss_pred HHHHHHHHHHHHHhhchhhhhhhh--hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 547 TIVENAAKQLKQISEKPGATKLML--DFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVM 622 (1334)
Q Consensus 547 ~~~~~~~~~~~~~l~~~~~ei~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~ 622 (1334)
+... +..+...+.....++..+ ++...+...+..+......+..+...+..++..+..+..+...+..++....
T Consensus 810 L~~e--l~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~ 885 (1822)
T KOG4674|consen 810 LERE--LQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAK 885 (1822)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3333 333333332222222221 0144445555555566666666666666666667777776666666666555
No 103
>KOG0018|consensus
Probab=99.10 E-value=1.7e-05 Score=98.94 Aligned_cols=219 Identities=13% Similarity=0.064 Sum_probs=121.8
Q ss_pred cccccccCCCcChHHHHHHh--hhcCCCccceechhhhh-ccCc---cch-hccCCeEeeeccccccc-hhhhHHHHhhh
Q psy11935 278 NQQYAPSSNQQYSIPTSNIN--QQYSMFSADSTHMNIVE-RDIP---NSA-DDMRKYIEMQYSMFSAD-STHMNIVERDI 349 (1334)
Q Consensus 278 alQnIVv~~e~~Ak~aI~~L--K~~~~GRaTFLPl~~Ik-r~l~---~~~-~~~~G~iG~A~dLV~~d-~~~~~Ii~~LL 349 (1334)
.+|.-|+.+......++.-| -...++++|-----.-+ +... ..+ .-.||+.|.-.||++-- .+|.-.++-.|
T Consensus 448 ~l~~~~~~~~~~~~e~n~eL~~~~~ql~das~dr~e~sR~~~~~eave~lKr~fPgv~GrviDLc~pt~kkyeiAvt~~L 527 (1141)
T KOG0018|consen 448 SLESLVSSAEEEPYELNEELVEVLDQLLDASADRHEGSRRSRKQEAVEALKRLFPGVYGRVIDLCQPTQKKYEIAVTVVL 527 (1141)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHHHHhCCCccchhhhcccccHHHHHHHHHHHH
Confidence 45567777777777777776 34455555521111112 1111 122 45799999999999875 88999999999
Q ss_pred hch-----hhhH---HHHHHHHhhCCC------------------CCc---eEecccccccC------------CCCccc
Q psy11935 350 PNS-----ADDM---RKYIEMLLEKPP------------------GNP---VSDLEAEVKDS------------AGPMTS 388 (1334)
Q Consensus 350 G~t-----~e~l---d~A~~iak~~~~------------------r~R---IVTLdGdvin~------------GGSiTG 388 (1334)
|.. |++- .+++...|.... ++| =|-|--|||++ |-++..
T Consensus 528 gk~~daIiVdte~ta~~CI~ylKeqr~~~~TFlPld~i~v~~~~e~lr~~~g~rlv~Dvi~ye~e~eka~~~a~gn~Lvc 607 (1141)
T KOG0018|consen 528 GKNMDAIIVDTEATARDCIQYLKEQRLEPMTFLPLDSIRVKPVNEKLRELGGVRLVIDVINYEPEYEKAVQFACGNALVC 607 (1141)
T ss_pred hcccceEEeccHHHHHHHHHHHHHhccCCccccchhhhhcCcccccccCcCCeEEEEEecCCCHHHHHHHHHHhccceec
Confidence 997 6665 556667665542 111 12222344442 222211
Q ss_pred ccc-----------cC-----------CCC-----CcccchhhHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 389 FLE-----------SS-----------VTS-----DIFNEPALYTKTVRSVTLKISKEKIESLERNLQTETQRSRKLEEE 441 (1334)
Q Consensus 389 Gs~-----------~~-----------~~~-----~ll~Rk~ei~~L~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~ 441 (1334)
-+. .+ +.+ |.-+++ . + +..+++|......+.++
T Consensus 608 ds~e~Ar~l~y~~~~r~k~valdGtl~~ksGlmsGG~s~~~-w-d------------------ek~~~~L~~~k~rl~ee 667 (1141)
T KOG0018|consen 608 DSVEDARDLAYGGEIRFKVVALDGTLIHKSGLMSGGSSGAK-W-D------------------EKEVDQLKEKKERLLEE 667 (1141)
T ss_pred CCHHHHHHhhhcccccceEEEeeeeEEeccceecCCccCCC-c-C------------------HHHHHHHHHHHHHHHHH
Confidence 100 00 000 001111 1 1 22334444444444444
Q ss_pred HHHHHHH------HH-HHHHHHHhHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 442 LQDTRQT------CE-EVVRKEVSIVTVTLFLERLRSSHSKRSKNADSLVRLQKAQ-DEIQTLLAKSASIKTELREFYQT 513 (1334)
Q Consensus 442 l~~~~~~------~~-e~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~-~~l~~l~~~~~~l~~~i~~~~~~ 513 (1334)
+.++... .+ .+..++..+...+.+++.+++.+..++.++......+... -++.++..++......+.+++..
T Consensus 668 l~ei~~~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~ 747 (1141)
T KOG0018|consen 668 LKEIQKRRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEER 747 (1141)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHH
Confidence 4444331 11 5666666677777777777777777777777777766655 66667777777777777777776
Q ss_pred hhh
Q psy11935 514 QLN 516 (1334)
Q Consensus 514 ~~~ 516 (1334)
..+
T Consensus 748 ~n~ 750 (1141)
T KOG0018|consen 748 MNK 750 (1141)
T ss_pred HHH
Confidence 665
No 104
>PRK01156 chromosome segregation protein; Provisional
Probab=99.06 E-value=0.0003 Score=94.34 Aligned_cols=36 Identities=0% Similarity=0.114 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy11935 426 RNLQTETQRSRKLEEELQDTRQTCEEVVRKEVSIVT 461 (1334)
Q Consensus 426 ~~~~~l~~~~~~l~~~l~~~~~~~~e~~~~~~~~~~ 461 (1334)
.++.++..++..++..+..+.....++..+...+..
T Consensus 522 ~~~~~l~~~l~~~~~~l~~le~~~~~~~~l~~~~~~ 557 (895)
T PRK01156 522 NKIESARADLEDIKIKINELKDKHDKYEEIKNRYKS 557 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555554444444444444333
No 105
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.00 E-value=1.3e-10 Score=106.04 Aligned_cols=81 Identities=37% Similarity=0.596 Sum_probs=46.1
Q ss_pred CcEEEEECCEEEEeCCCCcchhhhhhhcCCCCCCCEEEcCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCchhhhHHH
Q psy11935 663 EKFEVFIDDKKVMVDPGTTVLQPVAACAMPVMKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMA 742 (1334)
Q Consensus 663 ~~~~~~idg~~~~v~~g~til~~~~ac~~~~~~gm~v~t~s~~~~~~r~~~~~~ll~~hp~~C~~c~~~g~c~lq~~~~~ 742 (1334)
++|+|+|||++|+|++|.|||+...+. |..|++ ++.|.. +.+..| .
T Consensus 2 ~~v~i~idG~~v~~~~G~til~al~~~------gi~ip~----------------~c~~~~-----~r~~~~-------~ 47 (82)
T PF13510_consen 2 KMVTITIDGKPVEVPPGETILEALLAA------GIDIPR----------------LCYHGR-----PRGGLC-------P 47 (82)
T ss_dssp EEEEEEETTEEEEEEET-BHHHHHHHT------T--B-E----------------ETTTS------EEBSSS-------S
T ss_pred CEEEEEECCEEEEEcCCCHHHHHHHHC------CCeEEE----------------eeeccC-----cccccC-------C
Confidence 689999999999999999999965433 444443 222200 001222 4
Q ss_pred hCCCCCcccccccCCCCCccchhhhhhccCCCCcccccceeecCCCcccccccccCCCCcEEEcCCH
Q psy11935 743 FGSDRSRFTDIDFSGKSGTYTRVTRQRSWGLIPSRVFLQSINRHWIGPVAACAMPVMKGWRVKTNSE 809 (1334)
Q Consensus 743 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~lc~~~~v~~~~~~~~~aC~~~v~~gm~i~t~s~ 809 (1334)
.|.|+.|++++. |+ .-++||.|+|++||.|.|+|+
T Consensus 48 ~g~C~~C~Vev~--g~------------------------------~~v~AC~t~v~~GM~V~T~s~ 82 (82)
T PF13510_consen 48 IGSCRLCLVEVD--GE------------------------------PNVRACSTPVEDGMVVETQSP 82 (82)
T ss_dssp STT-SS-EEEES--SE------------------------------EEEETTT-B--TTEEEE----
T ss_pred ccccceEEEEEC--CC------------------------------cceEcccCCCcCCcEEEEeEC
Confidence 677788887643 32 237999999999999999764
No 106
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.96 E-value=0.00071 Score=93.12 Aligned_cols=49 Identities=12% Similarity=0.116 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy11935 4 QDEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE 52 (1334)
Q Consensus 4 l~~~~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~ 52 (1334)
+..+..++..++..++..+..+..++..++.+..++..+..+++.+++.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~ 326 (1353)
T TIGR02680 278 YDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGS 326 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3444455555555555555555555555555555555555555555544
No 107
>PRK08764 ferredoxin; Provisional
Probab=98.68 E-value=1.2e-08 Score=102.66 Aligned_cols=34 Identities=12% Similarity=0.314 Sum_probs=30.5
Q ss_pred HHhCCCCCCCCCCCCCCchhhhHHHhCCCCCccc
Q psy11935 718 LVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFT 751 (1334)
Q Consensus 718 l~~hp~~C~~c~~~g~c~lq~~~~~~g~~~~~~~ 751 (1334)
+++|.++|..|+++|+|+||++++.||+...+|.
T Consensus 35 ~v~g~~~~~~C~~~G~c~lq~~a~~~gv~~~~~~ 68 (135)
T PRK08764 35 MARGEATIDRCPPGGDAGARALAQVLGVPARPYD 68 (135)
T ss_pred HHcCCCCCCCCCCCCHHHHHHHHHHhCCCccccc
Confidence 5699999999999999999999999999766553
No 108
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.62 E-value=3.9e-05 Score=85.41 Aligned_cols=220 Identities=15% Similarity=0.164 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh----------HHHHHHHHHhhhHHHHHHHHH
Q psy11935 4 QDEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE----------LREFYQTQLNNNQKAQDEIQT 73 (1334)
Q Consensus 4 l~~~~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~----------~~er~~~~~~~~~~l~~~i~~ 73 (1334)
+..++.++...+.++......+............++..+..++..++.. ..+++.......+.....++.
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~ 82 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKV 82 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666666666666666655555 444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHH
Q psy11935 74 LLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQISENEFKQKEKTIVENA 153 (1334)
Q Consensus 74 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~i~~~~~~~ie~~~~~~~l~n~~~~~~~~ 153 (1334)
++.+.......+..+ ..+++. ......+...++.++..++.... ..++......-..-.+...+..++....+.
T Consensus 83 lE~r~~~~eeri~~l-E~~l~e-a~~~~ee~e~k~~E~~rkl~~~E----~~Le~aEeR~e~~E~ki~eLE~el~~~~~~ 156 (237)
T PF00261_consen 83 LENREQSDEERIEEL-EQQLKE-AKRRAEEAERKYEEVERKLKVLE----QELERAEERAEAAESKIKELEEELKSVGNN 156 (237)
T ss_dssp HHHHHHHHHHHHHHC-HHHHHH-HHHHHHHHHHHHHHCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Confidence 444444444444444 444444 44444444444444444443332 222222222222333333334444444444
Q ss_pred HHHhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 154 AKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQAIH 232 (1334)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (1334)
++ .+.............+...|..+...+.+.....+.+..++..++..+..+...+.....++..+ +..+.+...
T Consensus 157 lk--~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~-~~eld~~l~ 232 (237)
T PF00261_consen 157 LK--SLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKV-QEELDQTLN 232 (237)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HH--HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 44 33333333444444444445555555554444444444555555555555554444444444444 444443333
No 109
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.62 E-value=0.006 Score=77.70 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy11935 100 KLKEFQTQLDSAELTLHRE 118 (1334)
Q Consensus 100 ~~~~~~~~l~~~~~~l~~~ 118 (1334)
++..++..+..++.++..+
T Consensus 239 ki~~lEr~l~~le~Ei~~L 257 (775)
T PF10174_consen 239 KIASLERMLRDLEDEIYRL 257 (775)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333
No 110
>PF09326 DUF1982: Domain of unknown function (DUF1982); InterPro: IPR015405 This C-terminal domain is functionally uncharacterised and is found in various prokaryotic NADH dehydrogenases including NADH-quinone oxidoreductase, chain G. ; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0051536 iron-sulfur cluster binding, 0055114 oxidation-reduction process
Probab=98.57 E-value=1.9e-08 Score=81.04 Aligned_cols=30 Identities=60% Similarity=1.019 Sum_probs=25.2
Q ss_pred CCCCCCccccccccccccccchhhhchHHHHHh
Q psy11935 1284 NLSSEPVDVKQKNLEDYYMTDPISRASGTMAKC 1316 (1334)
Q Consensus 1284 ~~~~~~~~~~~~~~~~~y~td~i~r~s~~m~~~ 1316 (1334)
.+...||. ..+.||||||||||+|+|||+|
T Consensus 20 ~~~~~~~~---~~i~dfY~Td~IsRAS~tMAeC 49 (49)
T PF09326_consen 20 KLSDAPFQ---SPIKDFYMTDPISRASPTMAEC 49 (49)
T ss_pred ccccCccc---cccccccccchhhhhhHHhhcC
Confidence 44556664 6688999999999999999999
No 111
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=98.52 E-value=4e-08 Score=104.81 Aligned_cols=109 Identities=14% Similarity=0.218 Sum_probs=68.6
Q ss_pred hCCCCCCCCCCCCCCchhhhHHHhCCCCCcccccccCCCCCccchhhhhhccCCCCcccccceeecCCCcccccccccCC
Q psy11935 720 NHPLDCPICDQGGECDLQDQSMAFGSDRSRFTDIDFSGKSGTYTRVTRQRSWGLIPSRVFLQSINRHWIGPVAACAMPVM 799 (1334)
Q Consensus 720 ~hp~~C~~c~~~g~c~lq~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~lc~~~~v~~~~~~~~~aC~~~v~ 799 (1334)
+|+ .-.-|+.+|+|+||+++..||+...++... .. .. ... .++
T Consensus 66 ~~~-~~~~C~~~G~c~lq~la~~~Gv~~~~~~~~----~~----------------------~~-~~~-~~~-------- 108 (191)
T PRK05113 66 NGE-KINKCPPGGEATMLKLAELLGVEPQPLDGE----AQ----------------------EA-TPA-RKV-------- 108 (191)
T ss_pred CCC-CcCcCCCCchHHHHHHHHHhCCCcccCccc----cc----------------------cc-ccc-Cce--------
Confidence 444 345688999999999999999876665431 00 00 000 011
Q ss_pred CCcEEEcCCHHHHHHHHHHHHHHhhCCCCCCcccccCCccchhhhhcccCccccccCCCCCceecccccccccccccccc
Q psy11935 800 KGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGNDLGTTGRGSDMQVGTYVEKLFLSELSGNV 879 (1334)
Q Consensus 800 ~gm~i~t~s~~~r~~r~~~~~~ll~~h~~~C~~C~~~g~c~~~~~e~~g~~~~~~~~rg~~~~i~~~~~~~~~~~~cg~c 879 (1334)
+.. +..+| +.|.+| ++.|.. +++.+.+++.+..+ .-.|+.||.|
T Consensus 109 ----~~i--d~~~C--------------i~Cg~C------v~aCp~----~ai~~~~~~~~~v~------~~~C~~Cg~C 152 (191)
T PRK05113 109 ----AFI--DEDNC--------------IGCTKC------IQACPV----DAIVGATKAMHTVI------SDLCTGCDLC 152 (191)
T ss_pred ----eEE--eCCcC--------------CCCChh------hhhCCH----hhhecccCCceeec------CCcCCchHHH
Confidence 222 33455 555555 999852 33444444433211 2369999999
Q ss_pred ccccccccccccCCcccCCCCc
Q psy11935 880 IDLCPVGALTSKPYSFTARPWE 901 (1334)
Q Consensus 880 v~~CpvGAl~~k~~~~~~r~we 901 (1334)
+.+||+|||+.+++.+..+.|.
T Consensus 153 v~vCP~~AI~~~~~~~~~~~w~ 174 (191)
T PRK05113 153 VAPCPTDCIEMIPVAETPDNWK 174 (191)
T ss_pred HHHcCcCceEEeeccccccCCc
Confidence 9999999999999988767664
No 112
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.46 E-value=0.00014 Score=81.08 Aligned_cols=223 Identities=12% Similarity=0.157 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh---HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 17 IKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE---LREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQL 93 (1334)
Q Consensus 17 ~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~---~~er~~~~~~~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~ 93 (1334)
++..++.+++....++..++..+.......+..+.+ +..|+..+...+++.+.++.....++..+....... ...+
T Consensus 2 K~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~-er~~ 80 (237)
T PF00261_consen 2 KIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADES-ERAR 80 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHH-CHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 467778888888888888888888888888888888 888888888888888888888888888888888777 7777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHhhhhhcchhhhhHHHHH
Q psy11935 94 NNNVKEKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQISENEFKQKEKTIVENAAKQLKQISEKPGATKLMLDF 173 (1334)
Q Consensus 94 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~i~~~~~~~ie~~~~~~~l~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (1334)
+. +.........++..++..+.... ...++....+-+...+...+...+...+.+.. ....+...++.++...
T Consensus 81 k~-lE~r~~~~eeri~~lE~~l~ea~----~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e--~~E~ki~eLE~el~~~ 153 (237)
T PF00261_consen 81 KV-LENREQSDEERIEELEQQLKEAK----RRAEEAERKYEEVERKLKVLEQELERAEERAE--AAESKIKELEEELKSV 153 (237)
T ss_dssp HH-HHHHHHHHHHHHHHCHHHHHHHH----HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HH-HHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhchhHHHHHHHHHHH
Confidence 77 77777777777777777766554 22233333344444455555566666666666 6666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHh
Q psy11935 174 KAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQAIHMITSDVTHLHTSKESL 248 (1334)
Q Consensus 174 ~~~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~srl~~Vk~vL 248 (1334)
.+.+..++..........+.+..+|..+..++.+...........+..+ +..+..+...+...+.++..++.=|
T Consensus 154 ~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~L-e~~id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 154 GNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKL-EKEIDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666665555555555556666666666666666666666666666 5555555555555555554444333
No 113
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.39 E-value=0.024 Score=72.40 Aligned_cols=58 Identities=10% Similarity=0.072 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy11935 459 IVTVTLFLERLRSSHSKRSKNADSLVRLQKAQ-DEIQTLLAKSASIKTELREFYQTQLN 516 (1334)
Q Consensus 459 ~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~-~~l~~l~~~~~~l~~~i~~~~~~~~~ 516 (1334)
++.....+......+..++.+...+..++.++ +.+...+.++..++.+|+.+...+.+
T Consensus 352 le~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~e 410 (775)
T PF10174_consen 352 LEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLRE 410 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444444333 44444444445555554444444433
No 114
>PRK11637 AmiB activator; Provisional
Probab=98.29 E-value=0.00043 Score=84.46 Aligned_cols=14 Identities=7% Similarity=-0.085 Sum_probs=7.8
Q ss_pred eEecccccccCCCC
Q psy11935 372 VSDLEAEVKDSAGP 385 (1334)
Q Consensus 372 IVTLdGdvin~GGS 385 (1334)
|..-.|+.|.+|=.
T Consensus 381 ~~v~~G~~V~~G~~ 394 (428)
T PRK11637 381 ALVSVGAQVRAGQP 394 (428)
T ss_pred CCCCCcCEECCCCe
Confidence 33446676666543
No 115
>KOG0979|consensus
Probab=98.25 E-value=0.042 Score=69.54 Aligned_cols=57 Identities=12% Similarity=0.098 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh--HHHHHHHH
Q psy11935 4 QDEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE--LREFYQTQ 60 (1334)
Q Consensus 4 l~~~~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~--~~er~~~~ 60 (1334)
+...=.++.+++....++...+..-++.++.|.+++..+....|+...+ .+.+|.-+
T Consensus 176 ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l 234 (1072)
T KOG0979|consen 176 LLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELL 234 (1072)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556666666666666666666666666666666666666665 45555444
No 116
>PRK06991 ferredoxin; Provisional
Probab=98.23 E-value=4.4e-07 Score=101.35 Aligned_cols=110 Identities=14% Similarity=0.209 Sum_probs=68.4
Q ss_pred HHhCCCCCCCCCCCCCCchhhhHHHhCCCCCcccccccCCCCCccchhhhhhccCCCCcccccceeecCCCccccccccc
Q psy11935 718 LVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFTDIDFSGKSGTYTRVTRQRSWGLIPSRVFLQSINRHWIGPVAACAMP 797 (1334)
Q Consensus 718 l~~hp~~C~~c~~~g~c~lq~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~lc~~~~v~~~~~~~~~aC~~~ 797 (1334)
+.+|.++|..|..||.|.++.+++.+|....++... .+.. ...++
T Consensus 35 Ia~Gea~~n~Cp~gG~~gi~~la~llG~~~~~~~p~--~~~~---------------------------~~~~~------ 79 (270)
T PRK06991 35 IAAGEANYNRCPPGGAEGIARLAALLGKPVIPLDPA--NGVE---------------------------RPRAV------ 79 (270)
T ss_pred HHcCCCCCCcCCCCcHHHHHHHHHHhCCCccccccc--cccc---------------------------cccce------
Confidence 457899999999999999999999999765444320 0000 00011
Q ss_pred CCCCcEEEcCCHHHHHHHHHHHHHHhhCCCCCCcccccCCccchhhhhcccCccccccCCCCCceecccccccccccccc
Q psy11935 798 VMKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGNDLGTTGRGSDMQVGTYVEKLFLSELSG 877 (1334)
Q Consensus 798 v~~gm~i~t~s~~~r~~r~~~~~~ll~~h~~~C~~C~~~g~c~~~~~e~~g~~~~~~~~rg~~~~i~~~~~~~~~~~~cg 877 (1334)
+.. +..+| +.|++| +.+|- ++.+.+...+.+ .+ ....|+.||
T Consensus 80 ------~~i--d~~~C--------------igCg~C------v~aCP----~~AI~~~~~~~~-~v-----~~~~CigCg 121 (270)
T PRK06991 80 ------AVI--DEQLC--------------IGCTLC------MQACP----VDAIVGAPKQMH-TV-----LADLCTGCD 121 (270)
T ss_pred ------eEE--ccccC--------------CCCcHH------HHhCC----Hhheecccccce-ee-----CHhhCCCch
Confidence 222 34556 666666 88883 222322222211 11 134699999
Q ss_pred ccccccccccccccCCcccCCCC
Q psy11935 878 NVIDLCPVGALTSKPYSFTARPW 900 (1334)
Q Consensus 878 ~cv~~CpvGAl~~k~~~~~~r~w 900 (1334)
.|+.+||+|||...++.+....|
T Consensus 122 ~Cv~vCP~~AI~~~~~~~~~~~~ 144 (270)
T PRK06991 122 LCVPPCPVDCIDMVPVTGERTGW 144 (270)
T ss_pred HHHhhCCcCCeEeecCcchhhHH
Confidence 99999999999777765433344
No 117
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.21 E-value=0.0033 Score=75.85 Aligned_cols=42 Identities=10% Similarity=0.054 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy11935 9 TLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIK 50 (1334)
Q Consensus 9 ~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~ 50 (1334)
.+..++......++.+...+..+++.++.++....++.+.++
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~ 191 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLK 191 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444444344444333
No 118
>PRK11637 AmiB activator; Provisional
Probab=98.20 E-value=0.00065 Score=82.90 Aligned_cols=6 Identities=0% Similarity=-0.108 Sum_probs=3.6
Q ss_pred cccccc
Q psy11935 376 EAEVKD 381 (1334)
Q Consensus 376 dGdvin 381 (1334)
.|++|-
T Consensus 391 ~G~~ig 396 (428)
T PRK11637 391 AGQPIA 396 (428)
T ss_pred CCCeEE
Confidence 566664
No 119
>KOG0994|consensus
Probab=98.18 E-value=0.057 Score=68.34 Aligned_cols=79 Identities=13% Similarity=0.125 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHhHhhh------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy11935 34 KAQDEIQTLLAKSASIKTE------LREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQ 107 (1334)
Q Consensus 34 ~lq~~i~~l~~~ie~l~~~------~~er~~~~~~~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 107 (1334)
....++...+++++.+++- ..+.+.++....+.|+++|..+.+.+..+++.|..+ ..++.. ....++.++.+
T Consensus 1198 ay~s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi-~~~~~~-a~~~LesLq~~ 1275 (1758)
T KOG0994|consen 1198 AYASRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDI-TNSLPL-AGKDLESLQRE 1275 (1758)
T ss_pred hhHhHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh-hhccch-hhhhHHHHHHH
Confidence 4445555555666555555 788888888888888888888888888888888766 444443 34445555444
Q ss_pred HHHHHHH
Q psy11935 108 LDSAELT 114 (1334)
Q Consensus 108 l~~~~~~ 114 (1334)
...+...
T Consensus 1276 ~~~l~~~ 1282 (1758)
T KOG0994|consen 1276 FNGLLTT 1282 (1758)
T ss_pred HHHHHHH
Confidence 4443333
No 120
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.18 E-value=0.004 Score=75.19 Aligned_cols=88 Identities=17% Similarity=0.263 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh---HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy11935 7 IQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE---LREFYQTQLNNNQKAQDEIQTLLAKSASIKT 83 (1334)
Q Consensus 7 ~~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~---~~er~~~~~~~~~~l~~~i~~l~~~~~~~~~ 83 (1334)
++.++...+.+.+++......|+.+...++.++.++...+...+.+ ++++.+.+....+.+..+...+..+.+....
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ 220 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQ 220 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555444 5555555555555555555555554444444
Q ss_pred HHHHHHHHHHhH
Q psy11935 84 ELREFYQTQLNN 95 (1334)
Q Consensus 84 ~l~~~~~~~~~~ 95 (1334)
.+..+ +..+..
T Consensus 221 ri~~L-Eedi~~ 231 (546)
T PF07888_consen 221 RIREL-EEDIKT 231 (546)
T ss_pred HHHHH-HHHHHH
Confidence 44444 433333
No 121
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.17 E-value=3.7e-07 Score=118.93 Aligned_cols=85 Identities=15% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 534 ELTLHREFQQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKREL 613 (1334)
Q Consensus 534 e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 613 (1334)
+..+..+..++.++... ++.+.......+.++..+ ..++..+......+......+..++..++..+++.......
T Consensus 608 e~r~~~l~~elee~~~~--~~~a~r~rk~aE~el~e~--~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~ 683 (859)
T PF01576_consen 608 ERRLRALQAELEELREA--LEQAERARKQAESELDEL--QERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEA 683 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444433 333333334444444444 44444444444444444444555555555555554444444
Q ss_pred HHHHHHHHH
Q psy11935 614 MAKKVESVM 622 (1334)
Q Consensus 614 l~~~i~~~~ 622 (1334)
+.++....+
T Consensus 684 ~~ek~kka~ 692 (859)
T PF01576_consen 684 AEEKAKKAQ 692 (859)
T ss_dssp ---------
T ss_pred HHHHHHHhH
Confidence 444444333
No 122
>KOG1029|consensus
Probab=98.16 E-value=0.0014 Score=79.04 Aligned_cols=10 Identities=20% Similarity=0.209 Sum_probs=5.7
Q ss_pred CCCCCCEEEc
Q psy11935 692 PVMKGWRVKT 701 (1334)
Q Consensus 692 ~~~~gm~v~t 701 (1334)
||..|..+++
T Consensus 901 ~v~~qeq~ya 910 (1118)
T KOG1029|consen 901 PVAPQEQLYA 910 (1118)
T ss_pred cccccceeEE
Confidence 5555665554
No 123
>KOG4643|consensus
Probab=98.14 E-value=0.066 Score=67.43 Aligned_cols=48 Identities=10% Similarity=-0.004 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhh
Q psy11935 521 EKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQISEKPGATKLML 570 (1334)
Q Consensus 521 ~~l~~~~~~~a~le~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ei~~~ 570 (1334)
..++.++.++-....++.....+..+++.. +-.++++.+.+..+|..+
T Consensus 509 a~~~elkeQ~kt~~~qye~~~~k~eeLe~~--l~~lE~ENa~LlkqI~~L 556 (1195)
T KOG4643|consen 509 ALKNELKEQYKTCDIQYELLSNKLEELEEL--LGNLEEENAHLLKQIQSL 556 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHH
Confidence 333334444444444444444444555444 555555555555555555
No 124
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=98.11 E-value=1.4e-06 Score=91.20 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=27.3
Q ss_pred HhCCCCCCCCCCCCCCchhhhHHHhCCCCCccc
Q psy11935 719 VNHPLDCPICDQGGECDLQDQSMAFGSDRSRFT 751 (1334)
Q Consensus 719 ~~hp~~C~~c~~~g~c~lq~~~~~~g~~~~~~~ 751 (1334)
.+||. ...|..+|.|+||+++..+|+...+|.
T Consensus 63 ~~~~~-i~~C~~~g~c~l~~~a~~~gv~~~~~~ 94 (165)
T TIGR01944 63 AEGEA-INKCPPGGEAVILALAELLGVEPIPQP 94 (165)
T ss_pred HcCCC-cCcCccccHHHHHHHHHHcCCCcccCC
Confidence 46777 778999999999999999999877664
No 125
>PF10588 NADH-G_4Fe-4S_3: NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; InterPro: IPR019574 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the G subunit (one of 14 subunits, A to N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This family does not contain related subunits from formate dehydrogenase complexes. This entry represents the iron-sulphur binding domain of the G subunit.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3.
Probab=98.08 E-value=1.6e-06 Score=67.44 Aligned_cols=29 Identities=66% Similarity=1.374 Sum_probs=20.7
Q ss_pred HHHHHHHHhhCCCCCCcccccCCccchhh
Q psy11935 815 REGVMEFLLVNHPLDCPICDQGGECDLQD 843 (1334)
Q Consensus 815 r~~~~~~ll~~h~~~C~~C~~~g~c~~~~ 843 (1334)
||.+|++||++||.+|+.|+++|+|.++.
T Consensus 1 Rr~~lelll~~H~~dC~~C~~~G~CeLQ~ 29 (41)
T PF10588_consen 1 RRTVLELLLANHPLDCPTCDKNGNCELQD 29 (41)
T ss_dssp -HHHHHHHHTT----TTT-TTGGG-HHHH
T ss_pred CHHHHHHHHhCCCCcCcCCCCCCCCHHHH
Confidence 79999999999999999999999999864
No 126
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.05 E-value=0.016 Score=64.58 Aligned_cols=76 Identities=21% Similarity=0.292 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh---HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 13 KSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE---LREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREF 88 (1334)
Q Consensus 13 ~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~---~~er~~~~~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 88 (1334)
.++.+...++..+..+.+..+.++.++..+.++...+..+ ..++...+......+.+++.++.++...+...+..+
T Consensus 10 E~e~K~~~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL 88 (294)
T COG1340 10 ELELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQEL 88 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555555555555555 445555555555555555555555555555444444
No 127
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.04 E-value=0.0016 Score=82.74 Aligned_cols=11 Identities=9% Similarity=0.129 Sum_probs=6.0
Q ss_pred ccCCCCccccc
Q psy11935 380 KDSAGPMTSFL 390 (1334)
Q Consensus 380 in~GGSiTGGs 390 (1334)
+.|-|.++.+.
T Consensus 135 ~l~q~~f~~f~ 145 (562)
T PHA02562 135 VLGTAGYVPFM 145 (562)
T ss_pred eeccCchhhHh
Confidence 45556565554
No 128
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.04 E-value=0.0015 Score=83.13 Aligned_cols=56 Identities=16% Similarity=0.060 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 174 KAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQA 230 (1334)
Q Consensus 174 ~~~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (1334)
...+.+++..+.+....+.....+...++.++..++....+...++..+ ..+|..+
T Consensus 336 ~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l-~~~l~~~ 391 (562)
T PHA02562 336 SKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKL-QDELDKI 391 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHH-HHHHHHH
Confidence 3334444444443333333333334444444444443333343444444 3333333
No 129
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.03 E-value=1e-06 Score=114.89 Aligned_cols=48 Identities=19% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy11935 5 DEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE 52 (1334)
Q Consensus 5 ~~~~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~ 52 (1334)
..++..+...+.++..+..++.........++..+.++...|+.++.+
T Consensus 7 ~~l~~~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~ee 54 (859)
T PF01576_consen 7 EELEEQLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEE 54 (859)
T ss_dssp ------------------------------------------------
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666666666666666666666655555
No 130
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.02 E-value=0.0024 Score=80.96 Aligned_cols=74 Identities=11% Similarity=0.059 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhcc
Q psy11935 176 KCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQAIHMITSDVTHLHTSKESLAT 250 (1334)
Q Consensus 176 ~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~srl~~Vk~vL~~ 250 (1334)
+.+.|-..|..++++-..++..|..-..-..+|-.-+-+...+++.. +.++.....++..+++|+.-|-+||=.
T Consensus 588 ~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~-~~~~~~~d~ei~~lk~ki~~~~av~p~ 661 (697)
T PF09726_consen 588 DTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIA-QGQLRKKDKEIEELKAKIAQLLAVMPS 661 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 44555555555555555566666655555566677777777777777 888888888888888888778888843
No 131
>KOG0976|consensus
Probab=98.01 E-value=0.09 Score=64.26 Aligned_cols=57 Identities=14% Similarity=0.214 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 174 KAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQAI 231 (1334)
Q Consensus 174 ~~~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (1334)
......+++.-..++...+.+.++..+++....-+..++.+.+..+..+ +..|..++
T Consensus 248 rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~-qeeLd~lk 304 (1265)
T KOG0976|consen 248 RKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKEL-QEELDTLK 304 (1265)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-HHHHHHHH
Confidence 3344444444444444444555555555555555555555555555555 44444443
No 132
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.00 E-value=0.19 Score=67.61 Aligned_cols=11 Identities=27% Similarity=0.202 Sum_probs=5.5
Q ss_pred CEEEEeCCCCc
Q psy11935 671 DKKVMVDPGTT 681 (1334)
Q Consensus 671 g~~~~v~~g~t 681 (1334)
|..+.|.-|.+
T Consensus 799 ~~~~~~~~~~~ 809 (908)
T COG0419 799 GLVVVVYDGGE 809 (908)
T ss_pred ceEEEEecCCC
Confidence 34555554444
No 133
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=98.00 E-value=0.019 Score=67.23 Aligned_cols=29 Identities=17% Similarity=0.087 Sum_probs=24.0
Q ss_pred EEEEECCEEEEeCCCCcchhhhhhhcCCCCCCCEEEc
Q psy11935 665 FEVFIDDKKVMVDPGTTVLQPVAACAMPVMKGWRVKT 701 (1334)
Q Consensus 665 ~~~~idg~~~~v~~g~til~~~~ac~~~~~~gm~v~t 701 (1334)
-.+.-+|..|..++|+||-- +.+|++|+-
T Consensus 317 gg~~wkG~vi~a~~Ga~V~A--------~AdG~VvyA 345 (420)
T COG4942 317 GGLRWKGMVIGASAGATVKA--------IADGRVVYA 345 (420)
T ss_pred CCccccceEEecCCCCeeee--------ecCceEEec
Confidence 44778999999999999944 578999996
No 134
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.98 E-value=0.019 Score=64.64 Aligned_cols=215 Identities=10% Similarity=0.113 Sum_probs=97.0
Q ss_pred hHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHhhHHHHHhh
Q psy11935 404 LYTKTVRSVTLKISKEKIESLERNLQTETQRSRKLEEELQDTRQTCE----EVVRKEVSIVTVTLFLERLRSSHSKRSKN 479 (1334)
Q Consensus 404 ei~~L~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~----e~~~~~~~~~~l~~~~~~~~~~~~~~~~e 479 (1334)
+++++..++ ..+..++...+.+..+.+.+-+..+.+++....+.+ ++.....++-....++.++.++...+..+
T Consensus 75 qlddi~~ql--r~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtr 152 (499)
T COG4372 75 QLDDIRPQL--RALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTR 152 (499)
T ss_pred hHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555 444445444444444444444444445544444433 33333333444444444444444444444
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q psy11935 480 ADSLVRLQKAQ-DEIQTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQLDSAELTLHREFQQKEKTIVEN-AAKQLK 557 (1334)
Q Consensus 480 ~~~l~~~~~~~-~~l~~l~~~~~~l~~~i~~~~~~~~~~~l~~~l~~~~~~~a~le~~~~~~~~~~~~~~~~~-~~~~~~ 557 (1334)
+..+..+...+ .+...|.++-..|+.... .++.+..+++.+.+.++++-..+..+.+-.+... -+....
T Consensus 153 l~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~---------Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~ 223 (499)
T COG4372 153 LKTLAEQRRQLEAQAQSLQASQKQLQASAT---------QLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRA 223 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444333 333333333333332222 2333333333333333333322222211111110 012222
Q ss_pred HHhhchhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11935 558 QISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQAIHM 632 (1334)
Q Consensus 558 ~~l~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~~~w~~~~~~ 632 (1334)
........+|... ...+......+..-.+.+.+.+.++..++....-++.+...++.-..... ....|++.+
T Consensus 224 aa~Qq~~q~i~qr--d~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~yyQ~y~-~lr~q~~a~ 295 (499)
T COG4372 224 AAAQQTAQAIQQR--DAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYV-RLRQQAAAT 295 (499)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHH
Confidence 2222333445555 55555555555555556666666666677777666666666666666666 566666543
No 135
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.94 E-value=0.15 Score=64.43 Aligned_cols=58 Identities=19% Similarity=0.176 Sum_probs=27.7
Q ss_pred ccccccCCCCcccccccCCCCCccc--chhhHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 376 EAEVKDSAGPMTSFLESSVTSDIFN--EPALYTKTVRSVTLKISKEKIESLERNLQTETQRSRKLEEELQ 443 (1334)
Q Consensus 376 dGdvin~GGSiTGGs~~~~~~~ll~--Rk~ei~~L~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~ 443 (1334)
.|+.+.|||++.+- ||+ .-.||.+|++++ .....+-..|...+++.+..++.-+..+.
T Consensus 244 ~~~~~~p~~~lv~D--------LfSEl~~~EiqKL~qQL--~qve~EK~~L~~~L~e~Q~qLe~a~~als 303 (717)
T PF09730_consen 244 KSESFSPAPSLVSD--------LFSELNLSEIQKLKQQL--LQVEREKSSLLSNLQESQKQLEHAQGALS 303 (717)
T ss_pred CCCCCCCCCcccch--------hhhhcchHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666676654433 232 124666666666 44333333444444444444444444333
No 136
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.90 E-value=0.036 Score=62.51 Aligned_cols=49 Identities=10% Similarity=0.201 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 174 KAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESV 222 (1334)
Q Consensus 174 ~~~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 222 (1334)
...+++....++....++..-.+.+.+-+.+++.++....-++.+...+
T Consensus 230 ~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~l 278 (499)
T COG4372 230 AQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQL 278 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444
No 137
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.88 E-value=0.36 Score=67.12 Aligned_cols=127 Identities=12% Similarity=0.115 Sum_probs=56.7
Q ss_pred CCcccccccCCCCCccc-------chhhHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q psy11935 384 GPMTSFLESSVTSDIFN-------EPALYTKTVRSVTLKISKEKIESLERNLQTETQRSRKLEEELQDTRQTCE------ 450 (1334)
Q Consensus 384 GSiTGGs~~~~~~~ll~-------Rk~ei~~L~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~------ 450 (1334)
|.++|-.. +....+++ |.+.|.+|...+ +.+.+++..+..++..+...+..+..+....-....
T Consensus 717 G~l~G~~~-k~~a~~IG~~aR~~~R~~ri~el~~~I--aeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~ 793 (1353)
T TIGR02680 717 GVLRGAWA-KPAAEYIGAAARERARLRRIAELDARL--AAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHR 793 (1353)
T ss_pred eeeecccC-CcchhHhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 44555553 44454444 234444444444 444444444444444444444444433332211111
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 451 EVVRKEVSIVTVTLFLERLRSSHSKRSKNADSLVRLQKAQ----------DEIQTLLAKSASIKTELREFYQT 513 (1334)
Q Consensus 451 e~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~----------~~l~~l~~~~~~l~~~i~~~~~~ 513 (1334)
.+......+.....++.+....+................. ..+..+...+......+..+...
T Consensus 794 ~l~~A~~~~~~a~~~l~~a~~~l~~a~~~~~~a~~~l~~aaa~l~L~a~~~~l~~~~~aL~~y~~~l~~l~~~ 866 (1353)
T TIGR02680 794 RAAEAERQAESAERELARAARKAAAAAAAWKQARRELERDAADLDLPTDPDALEAVGLALKRFGDHLHTLEVA 866 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555554444444443322 44444555554444444444433
No 138
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.87 E-value=0.04 Score=61.51 Aligned_cols=89 Identities=18% Similarity=0.190 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 521 EKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKET 600 (1334)
Q Consensus 521 ~~l~~~~~~~a~le~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 600 (1334)
..+.++.-+...+......+...+..+..+ +.....++..+-++...+ ..+.+.+...+......+.++..++..+
T Consensus 158 ~~~~el~aei~~lk~~~~e~~eki~~la~e--aqe~he~m~k~~~~~De~--Rkeade~he~~ve~~~~~~e~~ee~~~~ 233 (294)
T COG1340 158 EKLKELKAEIDELKKKAREIHEKIQELANE--AQEYHEEMIKLFEEADEL--RKEADELHEEFVELSKKIDELHEEFRNL 233 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 444444444445555555555555555555 555555555555555555 5555555555555555555555555554
Q ss_pred HHHHHHHHHHHHH
Q psy11935 601 NHLLKEESKKREL 613 (1334)
Q Consensus 601 ~~~l~~~~~~~~~ 613 (1334)
+..|.++...+..
T Consensus 234 ~~elre~~k~ik~ 246 (294)
T COG1340 234 QNELRELEKKIKA 246 (294)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 139
>KOG0971|consensus
Probab=97.84 E-value=0.011 Score=72.80 Aligned_cols=193 Identities=11% Similarity=0.136 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHhHHHHHHHHHHHHhhHHH-------HHhhHHHHH
Q psy11935 424 LERNLQTETQRSRKLEEELQDTRQTCE------------EVVRKEVSIVTVTLFLERLRSSHSK-------RSKNADSLV 484 (1334)
Q Consensus 424 l~~~~~~l~~~~~~l~~~l~~~~~~~~------------e~~~~~~~~~~l~~~~~~~~~~~~~-------~~~e~~~l~ 484 (1334)
|+.++..+++.++++.-.++.++++++ ++.+++.+-..+++.+-+++..... +..++....
T Consensus 330 LQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~ 409 (1243)
T KOG0971|consen 330 LQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKN 409 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Confidence 444555555555555555555555554 4444444444444444333332211 111222222
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 485 RLQKAQ-DEIQTLLAKSASIKTELREFYQTQLN----NNVKEKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQI 559 (1334)
Q Consensus 485 ~~~~~~-~~l~~l~~~~~~l~~~i~~~~~~~~~----~~l~~~l~~~~~~~a~le~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (1334)
.+..++ ..-+.|..+++..+..|..+++++.. +.+-++|++.+ -.+++++..+...+..++.- +++.++
T Consensus 410 sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdkn---lnlEekVklLeetv~dlEal---ee~~EQ 483 (1243)
T KOG0971|consen 410 SELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKN---LNLEEKVKLLEETVGDLEAL---EEMNEQ 483 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhc---cCHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 222222 33334444444455555555554444 55556666555 34566666666666666443 555666
Q ss_pred hhchhhh-hhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 560 SEKPGAT-KLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQ 625 (1334)
Q Consensus 560 l~~~~~e-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~~~ 625 (1334)
+.+...+ ...+ .++++....-+..+...++...+.+-+....|.++++-...|..++.+++ |+
T Consensus 484 L~Esn~ele~DL--reEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~-dq 547 (1243)
T KOG0971|consen 484 LQESNRELELDL--REELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELT-DQ 547 (1243)
T ss_pred HHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-hh
Confidence 5433332 2335 66666666666666666777777777777777777777777777777777 53
No 140
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=97.83 E-value=0.25 Score=63.32 Aligned_cols=45 Identities=16% Similarity=0.255 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHh
Q psy11935 203 HLLKEESKKRELMAKKVESVMQSQLQQAIHMITSDVTHLHTSKESL 248 (1334)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~srl~~Vk~vL 248 (1334)
.++.....+.+-+...+..- +++|+-.+..+-..-+||..+..-|
T Consensus 265 ~~l~~~eeEnk~Lke~l~~k-~~ELq~sr~~~a~ta~kL~~~e~ql 309 (769)
T PF05911_consen 265 ERLQAMEEENKMLKEALAKK-NSELQFSRNMYAKTASKLSQLEAQL 309 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444 4444544555555556666555555
No 141
>KOG4643|consensus
Probab=97.82 E-value=0.23 Score=62.83 Aligned_cols=126 Identities=13% Similarity=0.108 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhH---hhhhhHHHHHHHHHHhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 121 QKEKTIVENAAKQLKQISENE---FKQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIK 197 (1334)
Q Consensus 121 ~~~~~i~~~~~~~ie~~~~~~---~l~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~~~ 197 (1334)
.++.+++.++.++.+.+.+.- ....++..+.+..+ ....+..+..-++.-++.+.+++++.-.-+.++.+-+++.
T Consensus 209 dleae~~klrqe~~e~l~ea~ra~~yrdeldalre~ae--r~d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQ 286 (1195)
T KOG4643|consen 209 DLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAE--RPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQ 286 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhh--cCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444444544444443322 12233444444444 3333333333444445666666666666666666666666
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhhhhhHHHHHhc
Q psy11935 198 LKETNHLL--KEESKKRELMAKKVESVMQSQL---QQAIHMITSDVTHLHTSKESLA 249 (1334)
Q Consensus 198 l~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~srl~~Vk~vL~ 249 (1334)
|+.++++- ..+.+++-.+.+++..+ +.+. +....+++.-.+.+.++++-|.
T Consensus 287 Lq~lrarse~~tleseiiqlkqkl~dm-~~erdtdr~kteeL~eEnstLq~q~eqL~ 342 (1195)
T KOG4643|consen 287 LQKLRARSEGATLESEIIQLKQKLDDM-RSERDTDRHKTEELHEENSTLQVQKEQLD 342 (1195)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66665554 34444444444444444 3322 2222333333444444554443
No 142
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.80 E-value=0.033 Score=69.87 Aligned_cols=72 Identities=14% Similarity=0.119 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh------------HHHHHHHHHhhhHHHHHHHHHHH
Q psy11935 8 QTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE------------LREFYQTQLNNNQKAQDEIQTLL 75 (1334)
Q Consensus 8 ~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~------------~~er~~~~~~~~~~l~~~i~~l~ 75 (1334)
..+...++.+..++..++..+.+..+.....+.++...+..++++ -.+.-..+..+.+.|++++..+.
T Consensus 21 k~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~ 100 (617)
T PF15070_consen 21 KEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLE 100 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566666666666777777777777777777777777666 22222344444445555555554
Q ss_pred HHHH
Q psy11935 76 AKSA 79 (1334)
Q Consensus 76 ~~~~ 79 (1334)
.+++
T Consensus 101 ~qlq 104 (617)
T PF15070_consen 101 EQLQ 104 (617)
T ss_pred HHHH
Confidence 4433
No 143
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.79 E-value=0.027 Score=66.02 Aligned_cols=67 Identities=12% Similarity=0.133 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh---HHHHHHHHHhhhHHHHHHHHHHHH
Q psy11935 10 LLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE---LREFYQTQLNNNQKAQDEIQTLLA 76 (1334)
Q Consensus 10 ~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~---~~er~~~~~~~~~~l~~~i~~l~~ 76 (1334)
++...+.+++++...+....++..+|+.++.+++.++..++.+ ..-.+..+.+++.++..++..++.
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555444 333333333444444444443333
No 144
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.78 E-value=1.1e-05 Score=103.34 Aligned_cols=68 Identities=16% Similarity=0.306 Sum_probs=51.0
Q ss_pred CCCCC--CCCCCchhhhHHHhCCCCCcccccccCCCCCccchhhhhhccCCCCcccccceeecCCCcccccccccCCCCc
Q psy11935 725 CPICD--QGGECDLQDQSMAFGSDRSRFTDIDFSGKSGTYTRVTRQRSWGLIPSRVFLQSINRHWIGPVAACAMPVMKGW 802 (1334)
Q Consensus 725 C~~c~--~~g~c~lq~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~lc~~~~v~~~~~~~~~aC~~~v~~gm 802 (1334)
|..|. ++|.|+||+++..||+...+|.. ....+ . .+.+|.
T Consensus 569 ~~~~~C~~~~~C~Lq~~a~~~~~~~~~~~~-----~~~~~---------------------~-~~~~~~----------- 610 (652)
T PRK12814 569 CLRCRCNAVDDCRLRDLATRYLPDTPCKEE-----EHEGF---------------------S-ITRNGD----------- 610 (652)
T ss_pred hhhhhcCCCCCChhHHHHHHhCCCcccccc-----cccCc---------------------c-ccCCCC-----------
Confidence 66666 78999999999999999888853 11001 0 112455
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhCCCCCCcccccCCccchhhhhcccCcccc
Q psy11935 803 RVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGNDLG 853 (1334)
Q Consensus 803 ~i~t~s~~~r~~r~~~~~~ll~~h~~~C~~C~~~g~c~~~~~e~~g~~~~~ 853 (1334)
|.. ++.+| |.|++| |++|.|++|.+++.
T Consensus 611 -i~~--D~~kC--------------I~CgrC------v~~C~ev~~~~~~~ 638 (652)
T PRK12814 611 -IRF--EREKC--------------VDCGIC------VRTLEEYGAEGNTD 638 (652)
T ss_pred -eEe--ccccc--------------cCchHH------HHHHHHhcccchhh
Confidence 777 88999 999999 99999999877644
No 145
>KOG1029|consensus
Probab=97.75 E-value=0.022 Score=69.20 Aligned_cols=12 Identities=33% Similarity=0.476 Sum_probs=6.4
Q ss_pred cccCeEEEEcCC
Q psy11935 1049 EEADLILLIGTN 1060 (1334)
Q Consensus 1049 e~ad~Il~~G~n 1060 (1334)
...|.||+.-.|
T Consensus 926 ~egd~iLvtekd 937 (1118)
T KOG1029|consen 926 HEGDEILVTEKD 937 (1118)
T ss_pred cccceEEEeecc
Confidence 455666654433
No 146
>KOG0994|consensus
Probab=97.74 E-value=0.058 Score=68.33 Aligned_cols=65 Identities=15% Similarity=0.202 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy11935 176 KCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQAIHMITSDVTHL 241 (1334)
Q Consensus 176 ~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~srl 241 (1334)
+++++-..+.++..++....+.|-+++..+.++...+.....+|+.+ +...+.+...++++..++
T Consensus 1226 ~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesL-q~~~~~l~~~~keL~e~~ 1290 (1758)
T KOG0994|consen 1226 DIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESL-QREFNGLLTTYKELREQL 1290 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHH-HHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555555555555555555555555555555 555555555555554444
No 147
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.72 E-value=0.25 Score=60.25 Aligned_cols=87 Identities=15% Similarity=0.200 Sum_probs=42.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhhh--HHHH
Q psy11935 451 EVVRKEVSIVTVTLFLERLRSSHSKRSKNADSLVRLQKAQ--------DEIQTLLAKSASIKTELREFYQTQLN--NNVK 520 (1334)
Q Consensus 451 e~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~--------~~l~~l~~~~~~l~~~i~~~~~~~~~--~~l~ 520 (1334)
+......++..++.....++..++....-+..+...-+.+ .++..++-.+..++.+++.+.....+ ..++
T Consensus 581 e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~ 660 (786)
T PF05483_consen 581 EILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQ 660 (786)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3333444444444444444444443333333333332222 55566666666666666666555554 5555
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11935 521 EKLKEFQTQLDSAELTL 537 (1334)
Q Consensus 521 ~~l~~~~~~~a~le~~~ 537 (1334)
..|....+.-+.+..++
T Consensus 661 keie~K~~~e~~L~~Ev 677 (786)
T PF05483_consen 661 KEIESKSISEEELLGEV 677 (786)
T ss_pred HHHHHhhhhHHHHHHHH
Confidence 55555444444444333
No 148
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.71 E-value=0.51 Score=63.53 Aligned_cols=9 Identities=22% Similarity=0.220 Sum_probs=4.3
Q ss_pred EEEEECCEE
Q psy11935 665 FEVFIDDKK 673 (1334)
Q Consensus 665 ~~~~idg~~ 673 (1334)
+-++.||.+
T Consensus 801 ~~~~~~~~~ 809 (908)
T COG0419 801 VVVVYDGGE 809 (908)
T ss_pred EEEEecCCC
Confidence 444455554
No 149
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.71 E-value=0.34 Score=61.45 Aligned_cols=125 Identities=10% Similarity=0.135 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 53 LREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQLDSAELTLHREFQQKEKTIVENAAK 132 (1334)
Q Consensus 53 ~~er~~~~~~~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~i~~~~~~ 132 (1334)
.+..+..+.+.++..+.++..+...+..+.+.-... ...+.. +...+.++++.+......++.....+++.+.+....
T Consensus 103 a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~n-r~~v~~-l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~ 180 (569)
T PRK04778 103 AKHEINEIESLLDLIEEDIEQILEELQELLESEEKN-REEVEQ-LKDLYRELRKSLLANRFSFGPALDELEKQLENLEEE 180 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHH
Confidence 444445555555555555555555544444444444 444444 444555555554444444444445555555554443
Q ss_pred HHHHHHHhHhhhhhHHHHHHHHHHhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 133 QLKQISENEFKQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIK 197 (1334)
Q Consensus 133 ~ie~~~~~~~l~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~~~ 197 (1334)
|+.+.+... .... .+..+-+..++.++..++..+..+|.-+.++...
T Consensus 181 -f~~f~~l~~-~Gd~----------------~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~ 227 (569)
T PRK04778 181 -FSQFVELTE-SGDY----------------VEAREILDQLEEELAALEQIMEEIPELLKELQTE 227 (569)
T ss_pred -HHHHHHHhc-CCCH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222221 1111 1222333445566677777777776555554443
No 150
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.65 E-value=0.072 Score=62.32 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 579 YEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVM 622 (1334)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~ 622 (1334)
++..+..++.++.++..++......+..+-.-+..|+.+|...|
T Consensus 260 ~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR 303 (312)
T PF00038_consen 260 YQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYR 303 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44455555555666666666666666666666666666666666
No 151
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.65 E-value=0.31 Score=59.44 Aligned_cols=36 Identities=8% Similarity=0.047 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 53 LREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREF 88 (1334)
Q Consensus 53 ~~er~~~~~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 88 (1334)
..++..-....++..++-..++...++........+
T Consensus 167 saEK~~~yE~EREET~qly~~l~~niekMi~aFEeL 202 (786)
T PF05483_consen 167 SAEKMKKYEYEREETRQLYMDLNENIEKMIAAFEEL 202 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 445555555555555555555555555555555444
No 152
>KOG0962|consensus
Probab=97.65 E-value=0.55 Score=62.22 Aligned_cols=38 Identities=5% Similarity=-0.081 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 4 QDEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQT 41 (1334)
Q Consensus 4 l~~~~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~ 41 (1334)
+.+..+....++..+..++..+..-...+...++...+
T Consensus 409 ~~q~~k~~~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~ 446 (1294)
T KOG0962|consen 409 IKQRKKDIAELETNALDLIKEITDREVSLEAQKRIKDE 446 (1294)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433333
No 153
>PF13514 AAA_27: AAA domain
Probab=97.63 E-value=0.74 Score=63.37 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 606 EESKKRELMAKKVESVMQSQLQQ 628 (1334)
Q Consensus 606 ~~~~~~~~l~~~i~~~~~~~w~~ 628 (1334)
.+..++..+..++.... .+|..
T Consensus 937 ~l~~e~e~~~a~l~~~~-~~~~~ 958 (1111)
T PF13514_consen 937 ELEQEREEAEAELEELA-EEWAA 958 (1111)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHH
Confidence 33445555666666665 56643
No 154
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.60 E-value=0.016 Score=72.33 Aligned_cols=108 Identities=13% Similarity=0.168 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh---HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy11935 19 TELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE---LREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQLNN 95 (1334)
Q Consensus 19 ~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~---~~er~~~~~~~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~ 95 (1334)
.....++.+++.+++.+..++..+..+++.+... ..+.+.......+++++++. ++++...+ +... ...+..
T Consensus 324 ~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~-l~~k~~~l---L~d~-e~ni~k 398 (594)
T PF05667_consen 324 EEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK-LKKKTVEL---LPDA-EENIAK 398 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---hcCc-HHHHHH
Confidence 3344444444444444444444444444444444 33333333333334433333 11111111 1111 223344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 96 NVKEKLKEFQTQLDSAELTLHREFQQKEKTIVENAAK 132 (1334)
Q Consensus 96 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~i~~~~~~ 132 (1334)
++.-+.....++..+..++.....-+.+++..++..
T Consensus 399 -L~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~ 434 (594)
T PF05667_consen 399 -LQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEK 434 (594)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 444555555555555555555554444444444443
No 155
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.57 E-value=0.031 Score=71.18 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy11935 170 MLDFKAKCEVYEAENKKLKAEL 191 (1334)
Q Consensus 170 ~~~~~~~l~~l~~~l~~~~~~l 191 (1334)
.+.+-..|..++.+-..++..|
T Consensus 589 ~e~L~~aL~amqdk~~~LE~sL 610 (697)
T PF09726_consen 589 TEVLMSALSAMQDKNQHLENSL 610 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444444444444343333
No 156
>KOG0977|consensus
Probab=97.56 E-value=0.036 Score=67.20 Aligned_cols=64 Identities=13% Similarity=0.169 Sum_probs=31.8
Q ss_pred CCCcccccccCCCCCcccchhhHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 383 AGPMTSFLESSVTSDIFNEPALYTKTVRSVTLKISKEKIESLERNLQTETQRSRKLEEELQDTRQTCE 450 (1334)
Q Consensus 383 GGSiTGGs~~~~~~~ll~Rk~ei~~L~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~ 450 (1334)
+||-+||.......+.+...++-++ .++ +.|...+...-.++..|+.+-..|..++..++....
T Consensus 17 ~~~tssg~~~~~~as~ir~sR~rEK--~El--~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~ 80 (546)
T KOG0977|consen 17 PSSTSSGVSASNAASPIRDSREREK--KEL--QELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVG 80 (546)
T ss_pred CCccccccccccchhhhHHHHHHHH--HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3555566433334455555544443 444 555555555555555555555555555555554443
No 157
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.54 E-value=0.16 Score=63.54 Aligned_cols=77 Identities=16% Similarity=0.164 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Q psy11935 168 KLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQAIHMITSDVTHLHTSK 245 (1334)
Q Consensus 168 ~~~~~~~~~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~srl~~Vk 245 (1334)
..+.....+|++....|.....+...+...+..++.++...+..+..+....... ......+..++....+++..++
T Consensus 281 ~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a-~~~v~~L~~eL~~~r~eLea~~ 357 (522)
T PF05701_consen 281 SSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEA-SSEVSSLEAELNKTRSELEAAK 357 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHhhHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555555555555555555555555 5555555555555555555544
No 158
>KOG1003|consensus
Probab=97.53 E-value=0.096 Score=54.35 Aligned_cols=192 Identities=13% Similarity=0.106 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh---HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 16 SIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE---LREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQ 92 (1334)
Q Consensus 16 ~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~---~~er~~~~~~~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~ 92 (1334)
.....++..+..++..++..++.+....++++..... ...-++-+.+....++..+..+.. ++.+. +.
T Consensus 4 ~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~-------qLkEA--k~ 74 (205)
T KOG1003|consen 4 ADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEA-------QLKEA--KH 74 (205)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHH-------HHHHH--HH
Confidence 4456667777777777777777777777776666655 222222333333333333333333 23222 11
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHhhhhhcchhhhhHHHH
Q psy11935 93 LNNNVKEKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQISENEFKQKEKTIVENAAKQLKQISEKPGATKLMLD 172 (1334)
Q Consensus 93 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~i~~~~~~~ie~~~~~~~l~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (1334)
+.+....++.+...+|.-++..|.... ...+...+...++..+...+.|.+..+...- +.+.++...
T Consensus 75 iaE~adrK~eEVarkL~iiE~dLE~~e----eraE~~Es~~~eLeEe~~~~~~nlk~l~~~e---------e~~~q~~d~ 141 (205)
T KOG1003|consen 75 IAEKADRKYEEVARKLVIIEGELERAE----ERAEAAESQSEELEEDLRILDSNLKSLSAKE---------EKLEQKEEK 141 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH---------HHHhhhHHH
Confidence 111022233333333333333333222 1111122222222222222233333333332 333344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 173 FKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQA 230 (1334)
Q Consensus 173 ~~~~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (1334)
....|..+..++.+.....+...+.+..|...+.++...+.....++... .+.+-+.
T Consensus 142 ~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~-~~eLD~~ 198 (205)
T KOG1003|consen 142 YEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEA-KKELDET 198 (205)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHH-HHHHHHH
Confidence 45555555555555554445555555555555555555555555555555 4444433
No 159
>KOG0978|consensus
Probab=97.52 E-value=0.54 Score=58.90 Aligned_cols=91 Identities=22% Similarity=0.124 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 528 TQLDSAELTLHREFQQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEE 607 (1334)
Q Consensus 528 ~~~a~le~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 607 (1334)
..+..++++...+......+..+ +......++......... ......++.........+++++....++...++.+
T Consensus 524 ~~i~~leeq~~~lt~~~~~l~~e--l~~~~~~le~~kk~~~e~--~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~ 599 (698)
T KOG0978|consen 524 LKIGKLEEQERGLTSNESKLIKE--LTTLTQSLEMLKKKAQEA--KQSLEDLQIELEKSEAKLEQIQEQYAELELELEIE 599 (698)
T ss_pred HHHHHHHHHHHHhhHhhhhhHHH--HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444554455555555555 555555555555555555 55566666666666777777777777777777777
Q ss_pred HHHHHHHHHHHHHHH
Q psy11935 608 SKKRELMAKKVESVM 622 (1334)
Q Consensus 608 ~~~~~~l~~~i~~~~ 622 (1334)
...+..+++++..++
T Consensus 600 ~~k~~rleEE~e~L~ 614 (698)
T KOG0978|consen 600 KFKRKRLEEELERLK 614 (698)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777777766
No 160
>KOG0946|consensus
Probab=97.50 E-value=0.019 Score=70.44 Aligned_cols=67 Identities=19% Similarity=0.146 Sum_probs=27.4
Q ss_pred HHHHHHHhhchhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 553 AKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESV 621 (1334)
Q Consensus 553 ~~~~~~~l~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~ 621 (1334)
+.++++++..+-..+.+. ...++.+......+-.+....++++.+++++++........+.+++..+
T Consensus 815 ~~~~keq~~t~~~~tsa~--a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl 881 (970)
T KOG0946|consen 815 LTQLKEQIQTLLERTSAA--ADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSL 881 (970)
T ss_pred HHHHHHHHHHHHHHHHhh--hhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhH
Confidence 344444444444344443 3333333333333333344444444444444444444444444443333
No 161
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.48 E-value=0.13 Score=66.30 Aligned_cols=70 Identities=11% Similarity=0.048 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-------HHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy11935 9 TLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE-------LREFYQTQLNNNQKAQDEIQTLLAKS 78 (1334)
Q Consensus 9 ~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~-------~~er~~~~~~~~~~l~~~i~~l~~~~ 78 (1334)
.++..++.++..+..+...+.++...++.++.++..+++.++.. ..++...++.++..++.++.+...++
T Consensus 209 ~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l 285 (650)
T TIGR03185 209 SEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQL 285 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444432 44444445555555555544444443
No 162
>KOG0977|consensus
Probab=97.47 E-value=0.034 Score=67.39 Aligned_cols=27 Identities=7% Similarity=0.097 Sum_probs=14.6
Q ss_pred HHhhCCCCCceEecccccccCCCCccccc
Q psy11935 362 MLLEKPPGNPVSDLEAEVKDSAGPMTSFL 390 (1334)
Q Consensus 362 iak~~~~r~RIVTLdGdvin~GGSiTGGs 390 (1334)
|..++|..|++. .|..+-.+++-+|++
T Consensus 478 i~~~f~~~~~~~--~g~~v~i~~a~~G~~ 504 (546)
T KOG0977|consen 478 IVFKFPSGYVLK--PGASVTIWAADAGAV 504 (546)
T ss_pred EEEECCCCceec--CCceEEEeecCCCCc
Confidence 334444444443 666666656666665
No 163
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=97.46 E-value=8.8e-05 Score=81.74 Aligned_cols=19 Identities=21% Similarity=0.492 Sum_probs=16.2
Q ss_pred ccccccccccccccccccc
Q psy11935 869 KLFLSELSGNVIDLCPVGA 887 (1334)
Q Consensus 869 ~~~~~~~cg~cv~~CpvGA 887 (1334)
..+.|..||+|+.+||+|.
T Consensus 192 ~~~~C~~Cg~C~~~CP~~I 210 (220)
T TIGR00384 192 GVWRCTTCMNCSEVCPKGV 210 (220)
T ss_pred CCccCccccccccccCCCC
Confidence 3457999999999999875
No 164
>KOG0995|consensus
Probab=97.45 E-value=0.2 Score=60.35 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q psy11935 519 VKEKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQISEKPG 564 (1334)
Q Consensus 519 l~~~l~~~~~~~a~le~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 564 (1334)
...++.+...++..++..+.+....+.+..+. +..++.++....
T Consensus 430 i~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~--l~~~~~el~~~~ 473 (581)
T KOG0995|consen 430 ISEELHEAENELETLQEHFSNKASTIEEKIQI--LGEIELELKKAE 473 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 33555555555555666665555555555555 555555544333
No 165
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.42 E-value=0.048 Score=69.02 Aligned_cols=122 Identities=9% Similarity=0.069 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHhhhhhcchhhhhHHHHHHHHH
Q psy11935 101 LKEFQTQLDSAELTLHREF---QQKEKTIVENAAKQLKQISENEFKQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKC 177 (1334)
Q Consensus 101 ~~~~~~~l~~~~~~l~~~~---~~~~~~i~~~~~~~ie~~~~~~~l~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 177 (1334)
+.+++..+.++.+.+.... ..+.+.+..++....+..+....+++.+..++..++...+-.--............++
T Consensus 378 ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i 457 (569)
T PRK04778 378 YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEI 457 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHH
Confidence 4444444444444444333 2444444444444444444444444444444433331001111122234444555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 178 EVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESV 222 (1334)
Q Consensus 178 ~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 222 (1334)
..+...++.-+-.+...+..+......+..+..+..++.+....+
T Consensus 458 ~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~l 502 (569)
T PRK04778 458 EALAEELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATLT 502 (569)
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666555555555566666666666665555555555555
No 166
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=97.42 E-value=5.2e-05 Score=78.71 Aligned_cols=24 Identities=33% Similarity=0.636 Sum_probs=20.5
Q ss_pred cccccccccccccccccccccccC
Q psy11935 869 KLFLSELSGNVIDLCPVGALTSKP 892 (1334)
Q Consensus 869 ~~~~~~~cg~cv~~CpvGAl~~k~ 892 (1334)
....|++||.|+++||||||...+
T Consensus 93 n~grCIfCg~C~e~CPt~Al~~t~ 116 (172)
T COG1143 93 NLGRCIFCGLCVEVCPTGALVLTP 116 (172)
T ss_pred ccccccccCchhhhCchhhhcCCc
Confidence 455799999999999999996654
No 167
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=97.41 E-value=0.23 Score=59.17 Aligned_cols=184 Identities=9% Similarity=0.092 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q psy11935 171 LDFKAKCEVYEAENKKLKAE-------LTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQAIHMITSDVTHLHT 243 (1334)
Q Consensus 171 ~~~~~~l~~l~~~l~~~~~~-------l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~srl~~ 243 (1334)
..++++|.++...+.++... ...++..++.+.+.+...+....+.+..+.++ ++.-.+++.++.+.++++..
T Consensus 350 r~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~L-rkdEl~Are~l~~~~~~l~e 428 (570)
T COG4477 350 RKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSL-RKDELEARENLERLKSKLHE 428 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555544433 34467888888888888888888888888888 77777788889999999998
Q ss_pred HHHHhccCCCCCCccccccccccccccccccc-----cccccccccCCCcChHHHHHHh--hhcCCCccceechhhhh--
Q psy11935 244 SKESLATRQPSEQSLIDSTTDTNCPVTQQYVP-----SSNQQYAPSSNQQYSIPTSNIN--QQYSMFSADSTHMNIVE-- 314 (1334)
Q Consensus 244 Vk~vL~~~~~~~~~gI~G~Vaeli~Vp~~Y~~-----G~alQnIVv~~e~~Ak~aI~~L--K~~~~GRaTFLPl~~Ik-- 314 (1334)
++..|...+ ++|| |+.|-. |..+|+ .++-| +..+++++|-+ ++...
T Consensus 429 ikR~mek~n---LPGl----------Pe~~l~l~~~~~~~i~~-----------l~~eLse~pinm~~v~~~-v~~a~~~ 483 (570)
T COG4477 429 IKRYMEKSN---LPGL----------PETFLSLFFTAGHEIQD-----------LMKELSEVPINMEAVSAL-VDIATED 483 (570)
T ss_pred HHHHHHHcC---CCCC----------cHHHHHHHHhhhhHHHH-----------HHHHHhhcCCcHHHHHHH-HHHHHHH
Confidence 998886644 6664 666665 666664 33444 23333333311 00000
Q ss_pred -ccCccchhccCCeEeeeccccccchhhhHHHHhhhhchhhhHHHHHHHHh-hCCC--CCceEecccccccCCC
Q psy11935 315 -RDIPNSADDMRKYIEMQYSMFSADSTHMNIVERDIPNSADDMRKYIEMLL-EKPP--GNPVSDLEAEVKDSAG 384 (1334)
Q Consensus 315 -r~l~~~~~~~~G~iG~A~dLV~~d~~~~~Ii~~LLG~t~e~ld~A~~iak-~~~~--r~RIVTLdGdvin~GG 384 (1334)
..+.......---.-.|-.||+|..+|+.--. .+.+.|..|..+.. .+.| .|.|..---+.+-||-
T Consensus 484 m~~l~~~t~e~ve~a~LaE~lIQY~NRYRs~~~----~v~~~l~eAe~lF~~~~dY~~s~eia~qaLE~vEpGv 553 (570)
T COG4477 484 MNTLEDETEEVVENAVLAEQLIQYGNRYRSRNA----EVAKSLNEAERLFENAFDYDASFEIASQALEKVEPGV 553 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhCCcH
Confidence 00000000000001123355666666644322 23777788888777 4444 5555555556666654
No 168
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.40 E-value=0.18 Score=63.23 Aligned_cols=39 Identities=10% Similarity=0.019 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 9 TLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSA 47 (1334)
Q Consensus 9 ~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie 47 (1334)
.++.+++.+++.+..++.+++..++.++..+..+.++++
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~ 366 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELE 366 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444333333333
No 169
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.37 E-value=0.13 Score=64.58 Aligned_cols=33 Identities=3% Similarity=0.100 Sum_probs=14.0
Q ss_pred chhhHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHH
Q psy11935 401 EPALYTKTVRSVTLKISKEKIESLERNLQTETQRS 435 (1334)
Q Consensus 401 Rk~ei~~L~~~~~~~~~~~~~~~l~~~~~~l~~~~ 435 (1334)
|..|...|+... ...+.++..+..++..+..+.
T Consensus 13 rd~ya~~lk~e~--a~~qqr~~qmseev~~L~eEk 45 (617)
T PF15070_consen 13 RDQYAQQLKEES--AQWQQRMQQMSEEVRTLKEEK 45 (617)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444 444444444444444333333
No 170
>KOG0980|consensus
Probab=97.36 E-value=0.3 Score=61.15 Aligned_cols=12 Identities=17% Similarity=-0.020 Sum_probs=5.7
Q ss_pred cCCCccceechh
Q psy11935 300 YSMFSADSTHMN 311 (1334)
Q Consensus 300 ~~~GRaTFLPl~ 311 (1334)
+..+-.+||-.+
T Consensus 615 ~~~~~p~~Llst 626 (980)
T KOG0980|consen 615 RCLTSPDFLLST 626 (980)
T ss_pred CcCCCHHHHHHH
Confidence 444555555333
No 171
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=97.31 E-value=6e-05 Score=63.45 Aligned_cols=48 Identities=19% Similarity=0.199 Sum_probs=26.3
Q ss_pred CccchhhhhcccCccccccCCCCCceecccc--ccccccccccccccccccccc
Q psy11935 837 GECDLQDQSMAFGNDLGTTGRGSDMQVGTYV--EKLFLSELSGNVIDLCPVGAL 888 (1334)
Q Consensus 837 g~c~~~~~e~~g~~~~~~~~rg~~~~i~~~~--~~~~~~~~cg~cv~~CpvGAl 888 (1334)
|.|+..| ...++.+...+......... .....|++||.|+++||++||
T Consensus 6 g~C~~~C----P~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~AI 55 (55)
T PF13187_consen 6 GRCVEAC----PVGVIEFDEDGGKKVVDKDNERRNAEKCIGCGACVKACPTGAI 55 (55)
T ss_dssp THHHHHS----TTT-EEEETTTTCEECSECCESTTGGG--TTCHHHHHSTTT-E
T ss_pred chHHHHC----CccCeEccCccccccccccccCCCCCccccHhHHHHHcchhhC
Confidence 5558888 23444444444333222211 133479999999999999997
No 172
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.30 E-value=1.6 Score=59.47 Aligned_cols=16 Identities=25% Similarity=0.384 Sum_probs=8.8
Q ss_pred HHHhccCCCCCCccccccc
Q psy11935 245 KESLATRQPSEQSLIDSTT 263 (1334)
Q Consensus 245 k~vL~~~~~~~~~gI~G~V 263 (1334)
+.-|..+.+ .=|||.+
T Consensus 497 r~~L~~GeP---CPVCGS~ 512 (1047)
T PRK10246 497 RAQLQAGQP---CPLCGST 512 (1047)
T ss_pred HHhCCCCCC---cCCCCcc
Confidence 444455543 4589953
No 173
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.30 E-value=0.0014 Score=85.19 Aligned_cols=16 Identities=6% Similarity=-0.014 Sum_probs=0.0
Q ss_pred cccccccCCCcChHHH
Q psy11935 278 NQQYAPSSNQQYSIPT 293 (1334)
Q Consensus 278 alQnIVv~~e~~Ak~a 293 (1334)
-+|+...+++-.+|..
T Consensus 311 q~e~~~Le~el~sW~s 326 (722)
T PF05557_consen 311 QLENEKLEDELNSWES 326 (722)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567777777777765
No 174
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.30 E-value=1 Score=57.15 Aligned_cols=112 Identities=15% Similarity=0.208 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh---HHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy11935 6 EIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE---LREFYQTQLNNNQKAQDEIQTLLAKSASIK 82 (1334)
Q Consensus 6 ~~~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~---~~er~~~~~~~~~~l~~~i~~l~~~~~~~~ 82 (1334)
.+...+.+++.++...+..+.......+.+.....++....+.++.+ +++.++..+.+-.++-++..+++++--.++
T Consensus 31 ~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQ 110 (717)
T PF09730_consen 31 YLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQ 110 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 45556666666666666666666666677776666677777777666 777777777777777777777777766666
Q ss_pred HHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 83 TELREFYQTQ--LNNNVKEKLKEFQTQLDSAELTLHRE 118 (1334)
Q Consensus 83 ~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~l~~~ 118 (1334)
..+.-+...+ +.. ++.++..+.++..-+...+.+.
T Consensus 111 Kqvs~Lk~sQvefE~-~Khei~rl~Ee~~~l~~qlee~ 147 (717)
T PF09730_consen 111 KQVSVLKQSQVEFEG-LKHEIKRLEEEIELLNSQLEEA 147 (717)
T ss_pred HHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 6664442222 233 5555555555555555554433
No 175
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.27 E-value=0.027 Score=61.52 Aligned_cols=21 Identities=10% Similarity=0.003 Sum_probs=9.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHH
Q psy11935 165 GATKLMLDFKAKCEVYEAENK 185 (1334)
Q Consensus 165 ~~~~~~~~~~~~l~~l~~~l~ 185 (1334)
.+.++...+..+...+..++.
T Consensus 153 ~i~e~~~~~~~~~~~L~~~l~ 173 (239)
T COG1579 153 EIREEGQELSSKREELKEKLD 173 (239)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 333444444555555555444
No 176
>KOG0995|consensus
Probab=97.25 E-value=0.55 Score=56.66 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=5.4
Q ss_pred hhhHHHHHHHHHHHH
Q psy11935 62 NNNQKAQDEIQTLLA 76 (1334)
Q Consensus 62 ~~~~~l~~~i~~l~~ 76 (1334)
.+++..+.+++.++.
T Consensus 301 ~Eie~kEeE~e~lq~ 315 (581)
T KOG0995|consen 301 SEIEEKEEEIEKLQK 315 (581)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 177
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.25 E-value=0.17 Score=65.43 Aligned_cols=17 Identities=6% Similarity=0.180 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11935 67 AQDEIQTLLAKSASIKT 83 (1334)
Q Consensus 67 l~~~i~~l~~~~~~~~~ 83 (1334)
++.++..++.++.....
T Consensus 267 Le~ei~~le~e~~e~~~ 283 (650)
T TIGR03185 267 LERQLKEIEAARKANRA 283 (650)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 178
>KOG0612|consensus
Probab=97.23 E-value=0.34 Score=62.86 Aligned_cols=18 Identities=0% Similarity=-0.245 Sum_probs=8.8
Q ss_pred CcChHHHHHHhhhcCCCc
Q psy11935 287 QQYSIPTSNINQQYSMFS 304 (1334)
Q Consensus 287 e~~Ak~aI~~LK~~~~GR 304 (1334)
++.-+.++.+|...+.-|
T Consensus 699 e~~~~e~~~~lseek~ar 716 (1317)
T KOG0612|consen 699 EAQMKEIESKLSEEKSAR 716 (1317)
T ss_pred HHHHHHHHHHhcccccHH
Confidence 334455556655444433
No 179
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.22 E-value=0.051 Score=59.43 Aligned_cols=12 Identities=25% Similarity=0.753 Sum_probs=9.8
Q ss_pred HhCCCCCCCCCC
Q psy11935 719 VNHPLDCPICDQ 730 (1334)
Q Consensus 719 ~~hp~~C~~c~~ 730 (1334)
-|++--||.|+.
T Consensus 218 ~d~iv~CP~CgR 229 (239)
T COG1579 218 KDEIVFCPYCGR 229 (239)
T ss_pred CCCCccCCccch
Confidence 578888999985
No 180
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.21 E-value=0.15 Score=56.42 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh---HHHHHHHHHhhhHHHHHHHHHHHHH
Q psy11935 18 KTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE---LREFYQTQLNNNQKAQDEIQTLLAK 77 (1334)
Q Consensus 18 ~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~---~~er~~~~~~~~~~l~~~i~~l~~~ 77 (1334)
++....++..+......++.+|..+..+++.+.++ .++++...+.++..++.+|..++++
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~ 95 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKEN 95 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444 4455555555555555555555444
No 181
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.20 E-value=0.34 Score=50.70 Aligned_cols=46 Identities=7% Similarity=0.076 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy11935 7 IQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE 52 (1334)
Q Consensus 7 ~~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~ 52 (1334)
+-..++.++.....+..+..++...++...+.-.++..++..+...
T Consensus 6 L~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q 51 (193)
T PF14662_consen 6 LLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQ 51 (193)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555555555555555544
No 182
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.20 E-value=0.3 Score=51.10 Aligned_cols=71 Identities=18% Similarity=0.243 Sum_probs=34.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHhhHHHHHH
Q psy11935 415 KISKEKIESLERNLQTETQRSRKLEEELQDTRQTCEEVVRKEVSIVTVTLFLERLRSSHSKRSKNADSLVR 485 (1334)
Q Consensus 415 ~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~ 485 (1334)
..+..+...+...+..+...-.++.+++..++..+..++..-..-+.++.+++.++.....++.+...+..
T Consensus 18 ~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~a 88 (193)
T PF14662_consen 18 QKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLA 88 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555555555555555544444444444555555555554444444444333
No 183
>KOG1003|consensus
Probab=97.19 E-value=0.38 Score=50.09 Aligned_cols=26 Identities=23% Similarity=0.155 Sum_probs=9.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy11935 56 FYQTQLNNNQKAQDEIQTLLAKSASI 81 (1334)
Q Consensus 56 r~~~~~~~~~~l~~~i~~l~~~~~~~ 81 (1334)
|+..+..+.++.+.++..+..++...
T Consensus 12 ri~~leeele~aqErl~~a~~KL~Ea 37 (205)
T KOG1003|consen 12 RIQLLEEELDRAQERLATALQKLEEA 37 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 184
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=97.18 E-value=0.67 Score=52.76 Aligned_cols=42 Identities=10% Similarity=0.143 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy11935 11 LAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE 52 (1334)
Q Consensus 11 ~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~ 52 (1334)
+..+...+......+......++.+..++..+..+++.+..+
T Consensus 26 ~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k 67 (264)
T PF06008_consen 26 IEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEK 67 (264)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444
No 185
>KOG0976|consensus
Probab=97.17 E-value=1.1 Score=55.19 Aligned_cols=60 Identities=15% Similarity=0.242 Sum_probs=26.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy11935 54 REFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQLDSAELTL 115 (1334)
Q Consensus 54 ~er~~~~~~~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 115 (1334)
++...-++.++..++.+|..|+.....++-++..+ +..+.. ++..+++.+.+|+.....+
T Consensus 91 Rrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~l-Q~ti~~-~q~d~ke~etelE~~~srl 150 (1265)
T KOG0976|consen 91 RRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKL-QDTIQG-AQDDKKENEIEIENLNSRL 150 (1265)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHhhHHHH
Confidence 33333344444444444444444444444444444 444444 4444444444444444433
No 186
>KOG0962|consensus
Probab=97.15 E-value=1.9 Score=57.41 Aligned_cols=20 Identities=10% Similarity=-0.064 Sum_probs=11.3
Q ss_pred Cccccccccccccccccccc
Q psy11935 256 QSLIDSTTDTNCPVTQQYVP 275 (1334)
Q Consensus 256 ~~gI~G~Vaeli~Vp~~Y~~ 275 (1334)
+.-.+|+.++.+++-+.|+.
T Consensus 626 lk~~sgt~~~~~~~le~l~~ 645 (1294)
T KOG0962|consen 626 LKDESGTIDEYLDLLERLKG 645 (1294)
T ss_pred HHhhccchhhHHHHHHHHHH
Confidence 33456776666655555544
No 187
>KOG0963|consensus
Probab=97.14 E-value=0.62 Score=56.77 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=20.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 415 KISKEKIESLERNLQTETQRSRKLEEELQDTRQTC 449 (1334)
Q Consensus 415 ~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~ 449 (1334)
.-.......++.++..+...+..+..+++.+.+..
T Consensus 488 drfr~~n~~~e~~~r~a~~~~~~l~~el~~~~a~n 522 (629)
T KOG0963|consen 488 DRFRARNVELEAQVRLANDKIGFLESELEKLKADN 522 (629)
T ss_pred chhhhhhhhHHHHHhhccCchhHHhhhhhhhhccc
Confidence 44444555566666666666666666666555443
No 188
>KOG0946|consensus
Probab=97.14 E-value=0.045 Score=67.43 Aligned_cols=29 Identities=14% Similarity=0.287 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 422 ESLERNLQTETQRSRKLEEELQDTRQTCE 450 (1334)
Q Consensus 422 ~~l~~~~~~l~~~~~~l~~~l~~~~~~~~ 450 (1334)
..+.-+++++++...+++.+.+.+++++.
T Consensus 667 ~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq 695 (970)
T KOG0946|consen 667 RELDYQIENLKQMEKELQVENEELEEEVQ 695 (970)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444333333
No 189
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=97.13 E-value=1.3 Score=54.89 Aligned_cols=29 Identities=7% Similarity=0.044 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHhhCCC-----CCceEeccccccc
Q psy11935 353 ADDMRKYIEMLLEKPP-----GNPVSDLEAEVKD 381 (1334)
Q Consensus 353 ~e~ld~A~~iak~~~~-----r~RIVTLdGdvin 381 (1334)
+.+++.|+.--....+ --||-|+.|-+--
T Consensus 421 ma~ve~a~aRL~sL~~RlSyAvrrv~tiqGL~Ar 454 (739)
T PF07111_consen 421 MAKVEQALARLPSLSNRLSYAVRRVHTIQGLMAR 454 (739)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhcccchhHHHHHH
Confidence 4557776544333333 2355566665543
No 190
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=97.09 E-value=0.00011 Score=43.77 Aligned_cols=15 Identities=33% Similarity=0.837 Sum_probs=14.0
Q ss_pred ccccccccccccccc
Q psy11935 873 SELSGNVIDLCPVGA 887 (1334)
Q Consensus 873 ~~~cg~cv~~CpvGA 887 (1334)
|++||.|+++||+||
T Consensus 1 C~~C~~C~~~Cp~~A 15 (15)
T PF12798_consen 1 CTGCGACVEVCPTGA 15 (15)
T ss_pred CCCchHHHHHhcCCC
Confidence 678999999999998
No 191
>KOG0980|consensus
Probab=97.05 E-value=0.41 Score=60.05 Aligned_cols=13 Identities=23% Similarity=0.194 Sum_probs=7.3
Q ss_pred EecccccccCCCC
Q psy11935 373 SDLEAEVKDSAGP 385 (1334)
Q Consensus 373 VTLdGdvin~GGS 385 (1334)
.|+--+.||.|++
T Consensus 662 s~~~~~~~~na~a 674 (980)
T KOG0980|consen 662 SHLISTTINNAKA 674 (980)
T ss_pred HHHHHHHHhcchh
Confidence 3444566666664
No 192
>KOG0963|consensus
Probab=97.04 E-value=0.84 Score=55.64 Aligned_cols=30 Identities=7% Similarity=0.057 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 420 KIESLERNLQTETQRSRKLEEELQDTRQTC 449 (1334)
Q Consensus 420 ~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~ 449 (1334)
.+..+...+..+..++..+......+-+++
T Consensus 500 ~~r~a~~~~~~l~~el~~~~a~n~~lyeki 529 (629)
T KOG0963|consen 500 QVRLANDKIGFLESELEKLKADNTKLYEKI 529 (629)
T ss_pred HHhhccCchhHHhhhhhhhhcccccccccc
Confidence 333344444444444444444444443333
No 193
>PRK08764 ferredoxin; Provisional
Probab=97.03 E-value=0.00037 Score=70.37 Aligned_cols=68 Identities=12% Similarity=0.085 Sum_probs=44.7
Q ss_pred hhCCCCCCcccccCCccchhh-hhcccCccccccCCCCCceecccc-ccccccccccccccccccccccc
Q psy11935 823 LVNHPLDCPICDQGGECDLQD-QSMAFGNDLGTTGRGSDMQVGTYV-EKLFLSELSGNVIDLCPVGALTS 890 (1334)
Q Consensus 823 l~~h~~~C~~C~~~g~c~~~~-~e~~g~~~~~~~~rg~~~~i~~~~-~~~~~~~~cg~cv~~CpvGAl~~ 890 (1334)
+.+|...|..|+++|+|+++. ....|+....+..+.......... .....|+.||.|+++||++||..
T Consensus 35 ~v~g~~~~~~C~~~G~c~lq~~a~~~gv~~~~~~~~~~~~~~~~~~~~~~~~Ci~C~~Cv~aCp~~ai~~ 104 (135)
T PRK08764 35 MARGEATIDRCPPGGDAGARALAQVLGVPARPYDRSRGTHKLPQVAWIVEADCIGCTKCIQACPVDAIVG 104 (135)
T ss_pred HHcCCCCCCCCCCCCHHHHHHHHHHhCCCccccccccCCCCCCeeEEECcccCcCcchHHHhCChhhcCc
Confidence 458899999999999998754 234566655554332221111000 11236999999999999999954
No 194
>KOG3256|consensus
Probab=96.98 E-value=0.00023 Score=70.22 Aligned_cols=57 Identities=18% Similarity=0.362 Sum_probs=35.2
Q ss_pred CCCcccccCCccchhhhhcccCccccccCCCC-CceeccccccccccccccccccccccccccccC
Q psy11935 828 LDCPICDQGGECDLQDQSMAFGNDLGTTGRGS-DMQVGTYVEKLFLSELSGNVIDLCPVGALTSKP 892 (1334)
Q Consensus 828 ~~C~~C~~~g~c~~~~~e~~g~~~~~~~~rg~-~~~i~~~~~~~~~~~~cg~cv~~CpvGAl~~k~ 892 (1334)
|-|-.| ++.|-- ..-.+....|.. ...-..|.-+.-.|++||.|+.+|||.||...|
T Consensus 114 IACklC------eavCPa--qaitieae~r~dgsrRttrYdIDmtkCIyCG~CqEaCPvdaivegp 171 (212)
T KOG3256|consen 114 IACKLC------EAVCPA--QAITIEAEERTDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 171 (212)
T ss_pred hhHHHH------HHhCCc--ccceeeceecCCccccceeecccceeeeeecchhhhCCccceeccC
Confidence 888777 888732 112222222222 122233333445799999999999999997776
No 195
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=96.98 E-value=1.2 Score=52.07 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 424 LERNLQTETQRSRKLEEELQDTRQTCE 450 (1334)
Q Consensus 424 l~~~~~~l~~~~~~l~~~l~~~~~~~~ 450 (1334)
|++.+.+++..+.++.+.+..+..++.
T Consensus 485 Lee~i~~~~~~i~El~~~l~~~e~~L~ 511 (622)
T COG5185 485 LEEDIKNLKHDINELTQILEKLELELS 511 (622)
T ss_pred HHHHhhhHHhHHHHHHHHHHHHHHHHH
Confidence 666677777777666666655555544
No 196
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.95 E-value=0.29 Score=55.33 Aligned_cols=98 Identities=9% Similarity=0.078 Sum_probs=62.9
Q ss_pred HhHhhhhhHHHHHHHHHHhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 139 ENEFKQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKK 218 (1334)
Q Consensus 139 ~~~~l~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~ 218 (1334)
+.+..+.++..+...+. .........++++..+.+++-.++.+++.+-.+-+++...+...+.....+..++.+++++
T Consensus 207 QL~~An~qia~LseELa--~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdk 284 (306)
T PF04849_consen 207 QLSEANQQIASLSEELA--RKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDK 284 (306)
T ss_pred HhhhcchhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455566666666 5555555566677777777777777777777666666666666666666667777777777
Q ss_pred HHHHHHHHHHHHHHHhhhhhh
Q psy11935 219 VESVMQSQLQQAIHMITSDVT 239 (1334)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~s 239 (1334)
+... ..-|.....++....+
T Consensus 285 Y~E~-~~mL~EaQEElk~lR~ 304 (306)
T PF04849_consen 285 YAEC-MAMLHEAQEELKTLRK 304 (306)
T ss_pred HHHH-HHHHHHHHHHHHHhhC
Confidence 7776 6666666665555443
No 197
>KOG0612|consensus
Probab=96.95 E-value=0.49 Score=61.46 Aligned_cols=34 Identities=9% Similarity=0.010 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHH
Q psy11935 122 KEKTIVENAAKQLKQISENEFKQKEKTIVENAAK 155 (1334)
Q Consensus 122 ~~~~i~~~~~~~ie~~~~~~~l~n~~~~~~~~~~ 155 (1334)
.....+..+...-+.......+++++..++...+
T Consensus 607 ~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~ 640 (1317)
T KOG0612|consen 607 LRSELEKERRQRTEISEIIAELKEEISSLEETLK 640 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3333344444444444444445555555555544
No 198
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.94 E-value=0.36 Score=56.67 Aligned_cols=74 Identities=16% Similarity=0.107 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhhhhh
Q psy11935 168 KLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVM---QSQLQQAIHMITSDVTHL 241 (1334)
Q Consensus 168 ~~~~~~~~~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~srl 241 (1334)
.++.....+++....++.+++.+++.++.+++++..+..++..++.+++....... ..++..+...+..++...
T Consensus 216 ~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~ 292 (325)
T PF08317_consen 216 QELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKLT 292 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555555555555555555555554444321 334455555555555444
No 199
>PRK11281 hypothetical protein; Provisional
Probab=96.92 E-value=0.22 Score=66.55 Aligned_cols=13 Identities=23% Similarity=0.534 Sum_probs=7.5
Q ss_pred cccEEecCCCCCC
Q psy11935 1230 IADAILPGAAYTE 1242 (1334)
Q Consensus 1230 ~ADvVLP~a~~~E 1242 (1334)
-..|++|-..+..
T Consensus 969 ~~~ViIPNs~~~t 981 (1113)
T PRK11281 969 RKEVIVPNKAFVT 981 (1113)
T ss_pred CCEEEEechhhhc
Confidence 3456677665543
No 200
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=96.90 E-value=0.00043 Score=58.96 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=25.1
Q ss_pred CccchhhhhcccCccccccCCCCCceecccccccccccccccccccccc-cccc
Q psy11935 837 GECDLQDQSMAFGNDLGTTGRGSDMQVGTYVEKLFLSELSGNVIDLCPV-GALT 889 (1334)
Q Consensus 837 g~c~~~~~e~~g~~~~~~~~rg~~~~i~~~~~~~~~~~~cg~cv~~Cpv-GAl~ 889 (1334)
|.|+++|-. .+...+.+...+. ..+. ...|+.||.|+.+||| +||+
T Consensus 12 g~C~~~Cp~-~~~~~i~~~~~~~-~~v~-----~~~C~GCg~C~~~CPv~~AI~ 58 (59)
T PF14697_consen 12 GKCVRACPD-GAIDAIEVDEGKK-VPVN-----PDKCIGCGLCVKVCPVKDAIT 58 (59)
T ss_dssp SCCCHHCCC-CS-S-ECCTTTTS-SECE------TT--S-SCCCCCSSSTTSEE
T ss_pred hhHHhHcCc-cceeeEEecCCee-EEec-----cccCcCcCcccccCCCccCCC
Confidence 445999964 2233443333322 1222 2379999999999999 9995
No 201
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.90 E-value=0.75 Score=51.06 Aligned_cols=60 Identities=12% Similarity=0.121 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh---HHHHHHHHHhhhHHHHHHHHHHHHH
Q psy11935 18 KTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE---LREFYQTQLNNNQKAQDEIQTLLAK 77 (1334)
Q Consensus 18 ~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~---~~er~~~~~~~~~~l~~~i~~l~~~ 77 (1334)
+.+++.....++.+++.|..++.++..++..++.+ .++.++.++.++..++++|.+.++-
T Consensus 40 l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~ 102 (265)
T COG3883 40 LSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQEL 102 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333 4444444444444444444444333
No 202
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=96.88 E-value=1.4 Score=51.16 Aligned_cols=66 Identities=14% Similarity=0.215 Sum_probs=41.7
Q ss_pred hchhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 561 EKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQA 629 (1334)
Q Consensus 561 ~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~~~w~~~ 629 (1334)
..+...-..+ ..++..+..........+.....-.......++++......++.+...++ .+|+..
T Consensus 205 ~~~~~~E~~L--r~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k-~k~e~~ 270 (309)
T PF09728_consen 205 QTLKETEKEL--REQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWK-SKWEKS 270 (309)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3333444445 55555555555555566666666666666667777777777777777777 778765
No 203
>KOG4673|consensus
Probab=96.88 E-value=1.9 Score=52.68 Aligned_cols=11 Identities=27% Similarity=0.296 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q psy11935 67 AQDEIQTLLAK 77 (1334)
Q Consensus 67 l~~~i~~l~~~ 77 (1334)
+.+++..++.+
T Consensus 407 ~~QRva~lEkK 417 (961)
T KOG4673|consen 407 YHQRVATLEKK 417 (961)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 204
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.82 E-value=0.85 Score=51.69 Aligned_cols=98 Identities=16% Similarity=0.094 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 521 EKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKET 600 (1334)
Q Consensus 521 ~~l~~~~~~~a~le~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 600 (1334)
.++.+...+++.+.+.+........+.+.+ +..+-.++.+++...+.+ -.+.+++..-+...++.-..+..++.++
T Consensus 206 ~QL~~An~qia~LseELa~k~Ee~~rQQEE--It~LlsqivdlQ~r~k~~--~~EnEeL~q~L~~ske~Q~~L~aEL~el 281 (306)
T PF04849_consen 206 KQLSEANQQIASLSEELARKTEENRRQQEE--ITSLLSQIVDLQQRCKQL--AAENEELQQHLQASKESQRQLQAELQEL 281 (306)
T ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666666666 666666666666666666 5555656555555555566677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy11935 601 NHLLKEESKKRELMAKKVESVM 622 (1334)
Q Consensus 601 ~~~l~~~~~~~~~l~~~i~~~~ 622 (1334)
++++.+....+.+.+++++.+|
T Consensus 282 qdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 282 QDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 7777777777777777777776
No 205
>PRK11281 hypothetical protein; Provisional
Probab=96.82 E-value=0.7 Score=62.02 Aligned_cols=33 Identities=12% Similarity=0.105 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy11935 19 TELREFYQTQLNNNQKAQDEIQTLLAKSASIKT 51 (1334)
Q Consensus 19 ~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~ 51 (1334)
+..+++.+.++++++..-.++.+..+++++++.
T Consensus 76 ~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~ 108 (1113)
T PRK11281 76 DRQKEETEQLKQQLAQAPAKLRQAQAELEALKD 108 (1113)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 444444445555555555555555555555444
No 206
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.77 E-value=0.17 Score=51.59 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 174 KAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESV 222 (1334)
Q Consensus 174 ~~~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 222 (1334)
+.++...+..+......+.++..+...+..+...+..+....+.++..+
T Consensus 86 Eeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel 134 (143)
T PF12718_consen 86 EEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEEL 134 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444
No 207
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=96.75 E-value=0.0003 Score=58.41 Aligned_cols=47 Identities=17% Similarity=0.245 Sum_probs=21.2
Q ss_pred CccchhhhhcccCccccccCCCCCceecccccccccccccccccccccccc
Q psy11935 837 GECDLQDQSMAFGNDLGTTGRGSDMQVGTYVEKLFLSELSGNVIDLCPVGA 887 (1334)
Q Consensus 837 g~c~~~~~e~~g~~~~~~~~rg~~~~i~~~~~~~~~~~~cg~cv~~CpvGA 887 (1334)
|.|+..|- ..++.+...........+...+..|..||+|+.+||+||
T Consensus 6 ~~C~~~CP----~~~i~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~A 52 (52)
T PF12838_consen 6 GACVEACP----TGAIRLDEEENEEGKPKMVIDPDKCTGCGACVEVCPTGA 52 (52)
T ss_dssp -HHHHH-T----THHCEEEETTT-SSSTTSEETGGG----SHHHHHTTTS-
T ss_pred CchHHhcC----ccccCcccccccCCceEEEEechhCcCcChhhhhCcCcC
Confidence 55588883 233444333221111111223456999999999999997
No 208
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=96.75 E-value=0.8 Score=53.58 Aligned_cols=39 Identities=18% Similarity=0.093 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy11935 14 SASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE 52 (1334)
Q Consensus 14 ~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~ 52 (1334)
+..-+..++....+.+.++..||-.-.-|..+++.|+.+
T Consensus 315 LNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k 353 (527)
T PF15066_consen 315 LNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMK 353 (527)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHH
Confidence 334456666666677777777777777777777777777
No 209
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.66 E-value=0.26 Score=50.24 Aligned_cols=46 Identities=17% Similarity=0.235 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy11935 7 IQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE 52 (1334)
Q Consensus 7 ~~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~ 52 (1334)
++.+........+.+..++..++........+|..+..++..++.+
T Consensus 5 lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~e 50 (143)
T PF12718_consen 5 LKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEE 50 (143)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444433
No 210
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=96.65 E-value=0.00082 Score=71.51 Aligned_cols=21 Identities=24% Similarity=0.580 Sum_probs=18.3
Q ss_pred ccccccccccccccccccccc
Q psy11935 871 FLSELSGNVIDLCPVGALTSK 891 (1334)
Q Consensus 871 ~~~~~cg~cv~~CpvGAl~~k 891 (1334)
..|++||.|+++||+|||...
T Consensus 102 ~~Ci~Cg~Cv~aCP~~AI~~~ 122 (183)
T TIGR00403 102 GVCIFCGNCVEYCPTNCLSMT 122 (183)
T ss_pred ccccCcCchhhhcCCCCeecc
Confidence 359999999999999999643
No 211
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=96.65 E-value=1.7 Score=49.14 Aligned_cols=40 Identities=25% Similarity=0.408 Sum_probs=22.6
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 406 TKTVRSVTLKISKEKIESLERNLQTETQRSRKLEEELQDTRQ 447 (1334)
Q Consensus 406 ~~L~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~ 447 (1334)
+.|...+ ..++++...++..+...+.....+.+++..++.
T Consensus 23 ~~l~~~~--~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~ 62 (310)
T PF09755_consen 23 EQLRKRI--ESLQQENRVLKRELETEKARCKHLQEENRALRE 62 (310)
T ss_pred HHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555 555555566666665555555555555554443
No 212
>PRK09039 hypothetical protein; Validated
Probab=96.61 E-value=0.28 Score=57.74 Aligned_cols=16 Identities=19% Similarity=0.507 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11935 97 VKEKLKEFQTQLDSAE 112 (1334)
Q Consensus 97 ~~~~~~~~~~~l~~~~ 112 (1334)
++..+.+++.++..++
T Consensus 79 l~~~l~~l~~~l~~a~ 94 (343)
T PRK09039 79 LQDSVANLRASLSAAE 94 (343)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444333
No 213
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=96.55 E-value=0.00083 Score=78.46 Aligned_cols=36 Identities=14% Similarity=0.041 Sum_probs=28.5
Q ss_pred hhhhhccCC-C-Ccccccc----------eeecCCCcccccccccCCCC
Q psy11935 765 VTRQRSWGL-I-PSRVFLQ----------SINRHWIGPVAACAMPVMKG 801 (1334)
Q Consensus 765 ~~~~~~~~~-i-p~lc~~~----------~v~~~~~~~~~aC~~~v~~g 801 (1334)
+++++..++ | |||||++ +|++++ .+..||+|+|.++
T Consensus 32 L~~l~~i~~~~d~tL~~~~~c~~~~Cg~C~v~inG-~~~laC~t~v~~~ 79 (329)
T PRK12577 32 LDCLNRIKWEQDGSLAFRKNCRNTICGSCAMRING-RSALACKENVGSE 79 (329)
T ss_pred HHHHHHhCCcCCCCcEEcCCCCCCCCCCCEEEECC-eeecCcccchhhh
Confidence 588999988 8 6999994 677754 4667999999763
No 214
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=96.52 E-value=0.91 Score=60.76 Aligned_cols=32 Identities=13% Similarity=0.256 Sum_probs=16.6
Q ss_pred EEEEcCCCCh--hhccccEEecCCCCCCCCcccccC
Q psy11935 1217 IIYQGHHGDH--GASIADAILPGAAYTEKQSTYVNT 1250 (1334)
Q Consensus 1217 vV~~d~~~~e--ta~~ADvVLP~a~~~Ek~Gt~~n~ 1250 (1334)
|.-++.+.|. |..--.|++|-..+.- +.++|+
T Consensus 951 V~~I~lRsT~Irt~Dg~~IiIPNs~~it--~~IiN~ 984 (1109)
T PRK10929 951 VTKINTRATTISDWDRKEIIVPNKAFIT--EQFINW 984 (1109)
T ss_pred EEEEeeeEEEEEeCCCCEEEEEChhhhc--CceEec
Confidence 4444444332 3345568888776642 244554
No 215
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=96.50 E-value=0.0028 Score=72.09 Aligned_cols=18 Identities=33% Similarity=0.285 Sum_probs=14.3
Q ss_pred ECCEEEEeCCCCcchhhh
Q psy11935 669 IDDKKVMVDPGTTVLQPV 686 (1334)
Q Consensus 669 idg~~~~v~~g~til~~~ 686 (1334)
.+..+|++++|+|||+..
T Consensus 24 ~~~~~v~~~~~~tvLd~L 41 (279)
T PRK12576 24 WQEYKVKVDRFTQVTEAL 41 (279)
T ss_pred EEEEEEecCCCCHHHHHH
Confidence 456778899999999943
No 216
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.50 E-value=0.99 Score=52.97 Aligned_cols=54 Identities=15% Similarity=0.111 Sum_probs=24.0
Q ss_pred HHHHHHhhchhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 554 KQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESK 609 (1334)
Q Consensus 554 ~~~~~~l~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 609 (1334)
..+..++.....+|... ...+..++.+...+...++++..++.++...+.+.+.
T Consensus 212 ~~lr~eL~~~~~~i~~~--k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~ 265 (325)
T PF08317_consen 212 EALRQELAEQKEEIEAK--KKELAELQEELEELEEKIEELEEQKQELLAEIAEAEK 265 (325)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444 4444444444444444444444444444444444443
No 217
>KOG4593|consensus
Probab=96.50 E-value=3.6 Score=51.02 Aligned_cols=7 Identities=43% Similarity=1.009 Sum_probs=3.3
Q ss_pred HhCCCCC
Q psy11935 719 VNHPLDC 725 (1334)
Q Consensus 719 ~~hp~~C 725 (1334)
..||-||
T Consensus 657 a~~~~~~ 663 (716)
T KOG4593|consen 657 AEEPDDC 663 (716)
T ss_pred cCCCchh
Confidence 4445444
No 218
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.48 E-value=1.5 Score=47.08 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 14 SASIKTELREFYQTQLNNNQKAQD 37 (1334)
Q Consensus 14 ~e~~~~~~~~~l~~l~~~~~~lq~ 37 (1334)
+..++.+++.++..+...+..|+.
T Consensus 17 L~n~l~elq~~l~~l~~ENk~Lk~ 40 (194)
T PF15619_consen 17 LQNELAELQRKLQELRKENKTLKQ 40 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 219
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=96.47 E-value=0.00063 Score=46.45 Aligned_cols=18 Identities=28% Similarity=0.547 Sum_probs=15.8
Q ss_pred cccccccccccccccccc
Q psy11935 872 LSELSGNVIDLCPVGALT 889 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~ 889 (1334)
.|+.||.|+.+||++||+
T Consensus 7 ~C~~Cg~C~~~CP~~ai~ 24 (24)
T PF00037_consen 7 KCIGCGRCVEACPFDAIT 24 (24)
T ss_dssp TSSS-THHHHHSTTSSEE
T ss_pred HCCCcchhhhhcccccCC
Confidence 699999999999999984
No 220
>PRK09039 hypothetical protein; Validated
Probab=96.47 E-value=0.3 Score=57.56 Aligned_cols=23 Identities=13% Similarity=0.335 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 424 LERNLQTETQRSRKLEEELQDTR 446 (1334)
Q Consensus 424 l~~~~~~l~~~~~~l~~~l~~~~ 446 (1334)
|.+++...++++.+++.++..+-
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~L~ 66 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAELA 66 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHH
Confidence 56666666666666666655433
No 221
>PF13514 AAA_27: AAA domain
Probab=96.45 E-value=7.2 Score=53.90 Aligned_cols=43 Identities=12% Similarity=0.114 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy11935 10 LLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE 52 (1334)
Q Consensus 10 ~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~ 52 (1334)
.+.........+...+..+..+.+.+..++..+..++..+...
T Consensus 453 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 495 (1111)
T PF13514_consen 453 TVEAFRAEFEELERQLRRARDRLEELEEELARLEARLRRLAAA 495 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4445555555555555555556666666666665555555554
No 222
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.45 E-value=0.95 Score=52.39 Aligned_cols=67 Identities=12% Similarity=0.096 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhhhhh
Q psy11935 175 AKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVM---QSQLQQAIHMITSDVTHL 241 (1334)
Q Consensus 175 ~~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~srl 241 (1334)
.++.....++.+++.++.+++.+|+....+..++..++.+++..+..-. ..+...+...++.++...
T Consensus 218 ~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l~ 287 (312)
T smart00787 218 QEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSLT 287 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Confidence 3333333444444444444444444444444444444444444433322 333444445544444433
No 223
>PRK06991 ferredoxin; Provisional
Probab=96.41 E-value=0.0011 Score=74.50 Aligned_cols=68 Identities=15% Similarity=0.153 Sum_probs=40.7
Q ss_pred hCCCCCCcccccCCccchhh-hhcccCccccccC-CCCCceecccccccccccccccccccccccccccc
Q psy11935 824 VNHPLDCPICDQGGECDLQD-QSMAFGNDLGTTG-RGSDMQVGTYVEKLFLSELSGNVIDLCPVGALTSK 891 (1334)
Q Consensus 824 ~~h~~~C~~C~~~g~c~~~~-~e~~g~~~~~~~~-rg~~~~i~~~~~~~~~~~~cg~cv~~CpvGAl~~k 891 (1334)
.+|...|..|+.+|.|.... ..+.|.....+.. .+.........-....|+.||.|+.+||+|||...
T Consensus 36 a~Gea~~n~Cp~gG~~gi~~la~llG~~~~~~~p~~~~~~~~~~~~id~~~CigCg~Cv~aCP~~AI~~~ 105 (270)
T PRK06991 36 AAGEANYNRCPPGGAEGIARLAALLGKPVIPLDPANGVERPRAVAVIDEQLCIGCTLCMQACPVDAIVGA 105 (270)
T ss_pred HcCCCCCCcCCCCcHHHHHHHHHHhCCCccccccccccccccceeEEccccCCCCcHHHHhCCHhheecc
Confidence 35667899999999997432 3445665433221 11111101111122369999999999999999543
No 224
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=96.40 E-value=1.9 Score=50.57 Aligned_cols=90 Identities=17% Similarity=0.174 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhHhhHHHHHH----HHHHHHHHHHH
Q psy11935 517 NNVKEKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEA----ENKKLKAELTQ 592 (1334)
Q Consensus 517 ~~l~~~l~~~~~~~a~le~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ei~~~~~~~~~~~~~~----~~~~~~~~~~~ 592 (1334)
+.|+-++...+.....++++....-++..+...+ .-+.+..+..+++++..+ .....+++. .+.-++++.+.
T Consensus 414 etLqlelkK~k~nyv~LQEry~~eiQqKnksvsq--clEmdk~LskKeeeverL--Q~lkgelEkat~SALdlLkrEKe~ 489 (527)
T PF15066_consen 414 ETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQ--CLEMDKTLSKKEEEVERL--QQLKGELEKATTSALDLLKREKET 489 (527)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHH--HHHHHHHhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888899999998888888888888 888888888888888877 554444332 22234444555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11935 593 RDIKLKETNHLLKEESKK 610 (1334)
Q Consensus 593 ~~~~~~~l~~~l~~~~~~ 610 (1334)
+.++.-.+++.+.+.+++
T Consensus 490 ~EqefLslqeEfQk~eke 507 (527)
T PF15066_consen 490 REQEFLSLQEEFQKHEKE 507 (527)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 555555555555554443
No 225
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.39 E-value=1.5 Score=47.17 Aligned_cols=47 Identities=15% Similarity=0.278 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHHHHHHHHHHHH
Q psy11935 491 DEIQTLLAKSASIKTELREFYQTQLN------NNVKEKLKEFQTQLDSAELTL 537 (1334)
Q Consensus 491 ~~l~~l~~~~~~l~~~i~~~~~~~~~------~~l~~~l~~~~~~~a~le~~~ 537 (1334)
..+.+.+.++..++..+..+.....+ +.+..+|..+...+...+..+
T Consensus 89 ~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki 141 (194)
T PF15619_consen 89 RKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKI 141 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554443333 344444444443333333333
No 226
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.37 E-value=0.71 Score=46.49 Aligned_cols=107 Identities=18% Similarity=0.230 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh---HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy11935 5 DEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE---LREFYQTQLNNNQKAQDEIQTLLAKSASI 81 (1334)
Q Consensus 5 ~~~~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~---~~er~~~~~~~~~~l~~~i~~l~~~~~~~ 81 (1334)
.....++...+.+.+.++.+...++..++..+.....+..+.+..+.. +++.+......+.+++.++..+..+...+
T Consensus 6 l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L 85 (140)
T PF10473_consen 6 LHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENL 85 (140)
T ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666677777777777777777777777766666666665555 66666666666666666666666666666
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy11935 82 KTELREFYQTQLNNNVKEKLKEFQTQLDSAEL 113 (1334)
Q Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 113 (1334)
...+... +.++.+ +......+..-|..++.
T Consensus 86 ~k~lq~~-q~kv~e-LE~~~~~~~~~l~~~E~ 115 (140)
T PF10473_consen 86 DKELQKK-QEKVSE-LESLNSSLENLLQEKEQ 115 (140)
T ss_pred HHHHHHH-HHHHHH-HHHHhHHHHHHHHHHHH
Confidence 5555555 555555 44444444444433333
No 227
>KOG0971|consensus
Probab=96.37 E-value=4.7 Score=50.97 Aligned_cols=50 Identities=8% Similarity=-0.077 Sum_probs=23.9
Q ss_pred HHHhhhhchhhhHHHHHHHHhhCCCCCceEecccccccCCCC---cccccccCCCCCcccchhhH
Q psy11935 344 IVERDIPNSADDMRKYIEMLLEKPPGNPVSDLEAEVKDSAGP---MTSFLESSVTSDIFNEPALY 405 (1334)
Q Consensus 344 Ii~~LLG~t~e~ld~A~~iak~~~~r~RIVTLdGdvin~GGS---iTGGs~~~~~~~ll~Rk~ei 405 (1334)
++-.||+|.+.-.+ .++.....+|..| +||+ +|-|.. ...+.+-.|=.|+
T Consensus 620 Lv~lllpRl~~K~~---lv~s~a~ekFp~v--------~~~~reavt~gha-geqyaf~arllyl 672 (1243)
T KOG0971|consen 620 LVLLLLPRLICKAE---LVRSQAQEKFPLV--------ENCSREAVTRGHA-GEQYAFAARLLYL 672 (1243)
T ss_pred ehhHhHHHHHHHHH---HHHHHHHhhCCCc--------cccchhhccccch-hHHHHHHHHHHHH
Confidence 34456677733222 2333334455555 3333 666663 3345555554444
No 228
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=96.36 E-value=0.0015 Score=78.16 Aligned_cols=58 Identities=26% Similarity=0.369 Sum_probs=37.6
Q ss_pred CCCcccccCCccchhhhhcccCccccccCCCCCceeccccc---ccccccccccccccccccccccc
Q psy11935 828 LDCPICDQGGECDLQDQSMAFGNDLGTTGRGSDMQVGTYVE---KLFLSELSGNVIDLCPVGALTSK 891 (1334)
Q Consensus 828 ~~C~~C~~~g~c~~~~~e~~g~~~~~~~~rg~~~~i~~~~~---~~~~~~~cg~cv~~CpvGAl~~k 891 (1334)
+.|++| +++|-..+....++...++....+.+... ..-.|+.||.|+++||+|||+..
T Consensus 10 i~Cg~C------v~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~id~~~C~~Cg~Cv~~CP~~Ai~~~ 70 (374)
T TIGR02512 10 IGCGRC------VRACTNVQIVGALGFLNRGGKTEVAPKFGRLLDESNCIGCGQCSLVCPVGAITEK 70 (374)
T ss_pred CcChHh------hhhCCHhhccccccccccCCccccccccccccCcccCcCccCHHHhCCCChhhhh
Confidence 666655 99997655444455555554433332211 12359999999999999999655
No 229
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=96.34 E-value=2.6 Score=47.75 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy11935 6 EIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE 52 (1334)
Q Consensus 6 ~~~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~ 52 (1334)
.+...+..++.+...++.++.........|+.++..+....-++...
T Consensus 24 ~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~ 70 (310)
T PF09755_consen 24 QLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAK 70 (310)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666666666655555555444
No 230
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=96.33 E-value=1 Score=57.16 Aligned_cols=46 Identities=7% Similarity=0.022 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy11935 7 IQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE 52 (1334)
Q Consensus 7 ~~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~ 52 (1334)
+..+....-.++...+.++.++..+....+.++..+..+++.++.-
T Consensus 159 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~ 204 (563)
T TIGR00634 159 KVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEA 204 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhC
Confidence 3444444455555555555555555555555555555555555544
No 231
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=96.33 E-value=0.002 Score=67.69 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=19.5
Q ss_pred ccccccccccccccccccccccC
Q psy11935 870 LFLSELSGNVIDLCPVGALTSKP 892 (1334)
Q Consensus 870 ~~~~~~cg~cv~~CpvGAl~~k~ 892 (1334)
...|..||+|+.+||+|||+...
T Consensus 96 ~~~C~~Cg~Cv~~CP~~Ai~~~~ 118 (164)
T PRK05888 96 FGRCIFCGFCEEACPTDAIVETP 118 (164)
T ss_pred CCcCcccCcchhhcCcCcceecC
Confidence 34799999999999999996554
No 232
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=96.33 E-value=2.7 Score=56.41 Aligned_cols=12 Identities=17% Similarity=0.271 Sum_probs=5.8
Q ss_pred HHHHHHHHHHhc
Q psy11935 1271 WKIIRALSEGVS 1282 (1334)
Q Consensus 1271 w~Il~~La~~lg 1282 (1334)
+++...+-+++.
T Consensus 1059 ~el~~~I~~~F~ 1070 (1109)
T PRK10929 1059 HEIHQLILAGFR 1070 (1109)
T ss_pred HHHHHHHHHHHH
Confidence 344455555544
No 233
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=96.30 E-value=2.8 Score=47.67 Aligned_cols=85 Identities=12% Similarity=0.177 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh---HHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy11935 4 QDEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE---LREFYQTQLNNNQKAQDEIQTLLAKSAS 80 (1334)
Q Consensus 4 l~~~~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~---~~er~~~~~~~~~~l~~~i~~l~~~~~~ 80 (1334)
+..+..++..........+..+..++..+..+..++..+..+....... +.........+.+.|...+..+...+..
T Consensus 26 ~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~ 105 (264)
T PF06008_consen 26 IEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQE 105 (264)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666666666666666655555 4555555555555555555555555554
Q ss_pred HHHHHHHH
Q psy11935 81 IKTELREF 88 (1334)
Q Consensus 81 ~~~~l~~~ 88 (1334)
+..++..+
T Consensus 106 l~~~~~~l 113 (264)
T PF06008_consen 106 LIEQVESL 113 (264)
T ss_pred HHHHHHHh
Confidence 44444333
No 234
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=96.29 E-value=0.002 Score=67.77 Aligned_cols=20 Identities=25% Similarity=0.607 Sum_probs=17.7
Q ss_pred cccccccccccccccccccc
Q psy11935 871 FLSELSGNVIDLCPVGALTS 890 (1334)
Q Consensus 871 ~~~~~cg~cv~~CpvGAl~~ 890 (1334)
..|+.||.|+++||+|||.-
T Consensus 99 ~~C~~Cg~C~~~CP~~AI~~ 118 (167)
T CHL00014 99 GVCIFCGNCVEYCPTNCLSM 118 (167)
T ss_pred CcCcCccchHhhcCcCceec
Confidence 35999999999999999954
No 235
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=96.28 E-value=0.0044 Score=77.11 Aligned_cols=43 Identities=16% Similarity=0.153 Sum_probs=30.7
Q ss_pred hhhhhccCC--CCccccc----------ceeecCCCcccccccccCCCCcEEEcCC
Q psy11935 765 VTRQRSWGL--IPSRVFL----------QSINRHWIGPVAACAMPVMKGWRVKTNS 808 (1334)
Q Consensus 765 ~~~~~~~~~--ip~lc~~----------~~v~~~~~~~~~aC~~~v~~gm~i~t~s 808 (1334)
++++...+. +|++||+ |.|..+ +.++.||.|++.+||.|.+.+
T Consensus 34 l~al~~~~~~~~~~l~~~~~C~~g~Cg~C~v~v~-G~~~laC~~~~~~~~~i~~~~ 88 (486)
T PRK06259 34 LDALEYINKTYDANIAFRSSCRAGQCGSCAVTIN-GEPVLACKTEVEDGMIIEPLD 88 (486)
T ss_pred HHHHHHhchhcCCCceecCCCCCCCCCCCEEEEC-CeEecccccCCCCCCEEEecC
Confidence 456665444 5666666 467654 357789999999999999863
No 236
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=96.27 E-value=0.0018 Score=60.70 Aligned_cols=21 Identities=19% Similarity=0.115 Sum_probs=18.3
Q ss_pred ccccccccccccccccccccc
Q psy11935 870 LFLSELSGNVIDLCPVGALTS 890 (1334)
Q Consensus 870 ~~~~~~cg~cv~~CpvGAl~~ 890 (1334)
...|+.||.|+.+||+|||+.
T Consensus 69 ~~~C~~Cg~C~~~CP~~AI~~ 89 (91)
T TIGR02936 69 PGNCIGCGACARVCPKKCQTH 89 (91)
T ss_pred CccCcChhhhhhhCCHhHEec
Confidence 346999999999999999964
No 237
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.26 E-value=1.9 Score=49.47 Aligned_cols=45 Identities=11% Similarity=-0.051 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy11935 6 EIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIK 50 (1334)
Q Consensus 6 ~~~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~ 50 (1334)
.....+..+-.+++.-+.+.+....-.+.++..+..++.....+.
T Consensus 6 SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~ 50 (319)
T PF09789_consen 6 SKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELI 50 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444455555555555555555555555555544444443
No 238
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=96.24 E-value=0.00095 Score=45.45 Aligned_cols=18 Identities=28% Similarity=0.536 Sum_probs=16.3
Q ss_pred cccccccccccccccccc
Q psy11935 871 FLSELSGNVIDLCPVGAL 888 (1334)
Q Consensus 871 ~~~~~cg~cv~~CpvGAl 888 (1334)
-.|+.||.|+.+||.|||
T Consensus 7 ~~C~~Cg~C~~~Cp~~ai 24 (24)
T PF12837_consen 7 DKCIGCGDCVRVCPEGAI 24 (24)
T ss_pred hhCcChhHHHHhcchhcC
Confidence 369999999999999997
No 239
>PLN00071 photosystem I subunit VII; Provisional
Probab=96.24 E-value=0.0015 Score=59.78 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=20.4
Q ss_pred ccccccccccccccccccccccCC
Q psy11935 870 LFLSELSGNVIDLCPVGALTSKPY 893 (1334)
Q Consensus 870 ~~~~~~cg~cv~~CpvGAl~~k~~ 893 (1334)
...|+.||.|+++||++||+.+.|
T Consensus 45 ~~~C~~Cg~C~~~CP~~Ai~~~~~ 68 (81)
T PLN00071 45 TEDCVGCKRCESACPTDFLSVRVY 68 (81)
T ss_pred CCcCcChhhHHhhcCCccceEeee
Confidence 346999999999999999977654
No 240
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.24 E-value=5.6 Score=50.40 Aligned_cols=145 Identities=10% Similarity=0.159 Sum_probs=76.3
Q ss_pred hhhHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHhhHHHHH
Q psy11935 402 PALYTKTVRSVTLKISKEKIESLERNLQTETQRSRKLEEELQDTRQTCE----EVVRKEVSIVTVTLFLERLRSSHSKRS 477 (1334)
Q Consensus 402 k~ei~~L~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~----e~~~~~~~~~~l~~~~~~~~~~~~~~~ 477 (1334)
..++..+..++ ......+..+ ++.........+.+.++.+-..++ -..........+...+....+.-..+.
T Consensus 251 ~~~i~~i~~~l--~~~~~~L~~l--~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~ 326 (560)
T PF06160_consen 251 EEEIEQIEEQL--EEALALLKNL--ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELK 326 (560)
T ss_pred HHHHHHHHHHH--HHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34566666565 5544444332 345555555555555555544444 222233334455555555555555555
Q ss_pred hhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 478 KNADSLVRLQ----KAQDEIQTLLAKSASIKTELREFYQTQLN-----NNVKEKLKEFQTQLDSAELTLHREFQQKEKTI 548 (1334)
Q Consensus 478 ~e~~~l~~~~----~~~~~l~~l~~~~~~l~~~i~~~~~~~~~-----~~l~~~l~~~~~~~a~le~~~~~~~~~~~~~~ 548 (1334)
.+.+.+...+ .++.....+..++..+......+...+.+ ..+...+.++..++..++.+.......+..+.
T Consensus 327 ~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~ 406 (560)
T PF06160_consen 327 EELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLR 406 (560)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555544 11155666666777777776666666666 45555555555555555555555444444444
Q ss_pred HH
Q psy11935 549 VE 550 (1334)
Q Consensus 549 ~~ 550 (1334)
..
T Consensus 407 ~d 408 (560)
T PF06160_consen 407 KD 408 (560)
T ss_pred HH
Confidence 44
No 241
>PRK06273 ferredoxin; Provisional
Probab=96.18 E-value=0.002 Score=67.07 Aligned_cols=22 Identities=27% Similarity=0.223 Sum_probs=18.4
Q ss_pred cccccccccccccccccccccc
Q psy11935 870 LFLSELSGNVIDLCPVGALTSK 891 (1334)
Q Consensus 870 ~~~~~~cg~cv~~CpvGAl~~k 891 (1334)
...|+.||.|+++||++||...
T Consensus 90 ~~kCi~Cg~C~~aCP~~AI~~~ 111 (165)
T PRK06273 90 YEKCVYCLYCHDFCPVFALFNE 111 (165)
T ss_pred cccCcCCCCcchhCCHhheecc
Confidence 3469999999999999999443
No 242
>KOG1853|consensus
Probab=96.18 E-value=0.67 Score=49.68 Aligned_cols=18 Identities=11% Similarity=0.110 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11935 518 NVKEKLKEFQTQLDSAEL 535 (1334)
Q Consensus 518 ~l~~~l~~~~~~~a~le~ 535 (1334)
.+..+|+..-...|-++-
T Consensus 137 DfeqrLnqAIErnAfLES 154 (333)
T KOG1853|consen 137 DFEQRLNQAIERNAFLES 154 (333)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444433333333333
No 243
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=96.16 E-value=2.9 Score=46.49 Aligned_cols=29 Identities=10% Similarity=0.137 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 594 DIKLKETNHLLKEESKKRELMAKKVESVM 622 (1334)
Q Consensus 594 ~~~~~~l~~~l~~~~~~~~~l~~~i~~~~ 622 (1334)
++++....+.+++++.+...|.+++++++
T Consensus 192 ~kei~~~re~i~el~e~I~~L~~eV~~L~ 220 (258)
T PF15397_consen 192 QKEIVQFREEIDELEEEIPQLRAEVEQLQ 220 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444
No 244
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.16 E-value=0.0013 Score=85.30 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=0.0
Q ss_pred hhhhhhhhHhhHHHHHHHHHHHHHHH
Q psy11935 565 ATKLMLDFKAKCEVYEAENKKLKAEL 590 (1334)
Q Consensus 565 ~ei~~~~~~~~~~~~~~~~~~~~~~~ 590 (1334)
.++..+ +.++......+..++.++
T Consensus 622 ~e~~~L--~~ql~e~~~~i~~lE~~~ 645 (713)
T PF05622_consen 622 PEIQAL--KKQLQEKDRRIESLEKEL 645 (713)
T ss_dssp --------------------------
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHh
Confidence 344444 444444444444444443
No 245
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=96.14 E-value=0.0018 Score=59.11 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=20.0
Q ss_pred cccccccccccccccccccccCC
Q psy11935 871 FLSELSGNVIDLCPVGALTSKPY 893 (1334)
Q Consensus 871 ~~~~~cg~cv~~CpvGAl~~k~~ 893 (1334)
..|+.||+|+++||+|||..+.|
T Consensus 45 ~~C~~Cg~C~~~CP~~ai~~~~~ 67 (80)
T TIGR03048 45 EDCVGCKRCESACPTDFLSVRVY 67 (80)
T ss_pred CcCcChhHHHHhcCcccCEEEEe
Confidence 46999999999999999976654
No 246
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.13 E-value=0.043 Score=71.62 Aligned_cols=33 Identities=18% Similarity=0.385 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy11935 53 LREFYQTQLNNNQKAQDEIQTLLAKSASIKTEL 85 (1334)
Q Consensus 53 ~~er~~~~~~~~~~l~~~i~~l~~~~~~~~~~l 85 (1334)
++.++.......+.+..+++.+..+...++.++
T Consensus 98 l~~~~~~~~~~~~ele~~~~~l~~~~~~le~el 130 (722)
T PF05557_consen 98 LQRQLEREFKRNQELEARLKQLEEREEELEEEL 130 (722)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444333333333
No 247
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=96.11 E-value=0.0054 Score=65.42 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=19.0
Q ss_pred cccccccccccccccccccccC
Q psy11935 871 FLSELSGNVIDLCPVGALTSKP 892 (1334)
Q Consensus 871 ~~~~~cg~cv~~CpvGAl~~k~ 892 (1334)
..|++||.|+++||+|||+..+
T Consensus 73 ~~C~~Cg~C~~vCP~~AI~~~~ 94 (180)
T PRK12387 73 GRCIFCGRCEEVCPTAAIKLSQ 94 (180)
T ss_pred ccCcCccchhhhcCcCceEccC
Confidence 4699999999999999997543
No 248
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.07 E-value=0.54 Score=58.92 Aligned_cols=25 Identities=4% Similarity=0.020 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHh
Q psy11935 26 QTQLNNNQKAQDEIQTLLAKSASIK 50 (1334)
Q Consensus 26 ~~l~~~~~~lq~~i~~l~~~ie~l~ 50 (1334)
+-++.++..++.++...+.++...+
T Consensus 164 ~fl~~ql~~~~~~L~~ae~~l~~f~ 188 (498)
T TIGR03007 164 RFIDEQIKTYEKKLEAAENRLKAFK 188 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 249
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.05 E-value=1.3 Score=54.13 Aligned_cols=23 Identities=9% Similarity=-0.127 Sum_probs=10.1
Q ss_pred cccccccc-ccccccc-cccccccc
Q psy11935 261 STTDTNCP-VTQQYVP-SSNQQYAP 283 (1334)
Q Consensus 261 G~Vaeli~-Vp~~Y~~-G~alQnIV 283 (1334)
|+|..+-- .+-.|.. |..+=.|+
T Consensus 280 G~V~~~~~~~~G~~v~~g~~l~~i~ 304 (423)
T TIGR01843 280 GTVQSLKVHTVGGVVQPGETLMEIV 304 (423)
T ss_pred cEEEEEEEEccCceecCCCeeEEEe
Confidence 45544422 2445554 54443343
No 250
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=96.02 E-value=0.0047 Score=65.70 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=19.3
Q ss_pred cccccccccccccccccccccC
Q psy11935 871 FLSELSGNVIDLCPVGALTSKP 892 (1334)
Q Consensus 871 ~~~~~cg~cv~~CpvGAl~~k~ 892 (1334)
..|++||+|+++||+|||...+
T Consensus 73 ~~C~~Cg~C~~~CPt~AI~~~~ 94 (181)
T PRK08222 73 GRCIYCGRCEEVCPTRAIQLTN 94 (181)
T ss_pred CcCcCCCCcccccCcCeEEecc
Confidence 3699999999999999997654
No 251
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.01 E-value=3.6 Score=46.14 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=14.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy11935 53 LREFYQTQLNNNQKAQDEIQTLLAKSAS 80 (1334)
Q Consensus 53 ~~er~~~~~~~~~~l~~~i~~l~~~~~~ 80 (1334)
+.-++.+-+...++|+.++.....+++.
T Consensus 75 L~SkLe~EKq~kerLEtEiES~rsRLaa 102 (305)
T PF14915_consen 75 LNSKLEKEKQNKERLETEIESYRSRLAA 102 (305)
T ss_pred HhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555554333
No 252
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.98 E-value=3 Score=45.09 Aligned_cols=37 Identities=16% Similarity=0.378 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy11935 68 QDEIQTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQT 106 (1334)
Q Consensus 68 ~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 106 (1334)
..++..+..+.+.+...+..+ +..+.+ +-..+...+.
T Consensus 68 ~~~i~~~~~erdq~~~dL~s~-E~sfsd-l~~ryek~K~ 104 (207)
T PF05010_consen 68 EAEIQKLLKERDQAYADLNSL-EKSFSD-LHKRYEKQKE 104 (207)
T ss_pred HHHHHHHHhhHHHHHHHHHHH-HhhHHH-HHHHHHHHHH
Confidence 333444444444444444444 444444 4443333333
No 253
>KOG1937|consensus
Probab=95.97 E-value=1.5 Score=51.20 Aligned_cols=57 Identities=14% Similarity=0.156 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 175 AKCEVYEAENKKLKA--ELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQAIH 232 (1334)
Q Consensus 175 ~~l~~l~~~l~~~~~--~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (1334)
.....+..++..++. .-..+..++.++...+....+++.+...+-.++ +.+.+....
T Consensus 366 el~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreL-qkq~ns~se 424 (521)
T KOG1937|consen 366 ELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETREL-QKQENSESE 424 (521)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 333444444444442 233456677777777777776666666666666 555544433
No 254
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=95.97 E-value=3.4 Score=51.72 Aligned_cols=23 Identities=13% Similarity=0.065 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 6 EIQTLLAKSASIKTELREFYQTQ 28 (1334)
Q Consensus 6 ~~~~~~~~~e~~~~~~~~~l~~l 28 (1334)
.+...+.+++.++..++.++..+
T Consensus 113 ~lk~~l~e~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 113 VLKIRLQELDQELRRLRRQLEEL 135 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444
No 255
>KOG1937|consensus
Probab=95.90 E-value=3.7 Score=48.10 Aligned_cols=19 Identities=11% Similarity=-0.339 Sum_probs=12.1
Q ss_pred ccccccCCCcChHHHHHHh
Q psy11935 279 QQYAPSSNQQYSIPTSNIN 297 (1334)
Q Consensus 279 lQnIVv~~e~~Ak~aI~~L 297 (1334)
.|+..+-+..+-+.+.=||
T Consensus 85 yqtfLypn~~dlR~ll~fL 103 (521)
T KOG1937|consen 85 YQTFLYPNINDLRSLLIFL 103 (521)
T ss_pred hhheecCCcccHHHHHHHH
Confidence 3666666666666665555
No 256
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.89 E-value=0.62 Score=58.39 Aligned_cols=18 Identities=11% Similarity=0.032 Sum_probs=11.7
Q ss_pred cccccccccccccccccc
Q psy11935 262 TTDTNCPVTQQYVPSSNQ 279 (1334)
Q Consensus 262 ~Vaeli~Vp~~Y~~G~al 279 (1334)
++.=.+..|+.|+..+.+
T Consensus 28 ~~~~~~~~pp~Y~a~a~l 45 (498)
T TIGR03007 28 GWGVVYFLPDRYEASARV 45 (498)
T ss_pred HHHHHHhCccceEEeEEE
Confidence 444456788999884443
No 257
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=95.89 E-value=0.77 Score=50.11 Aligned_cols=111 Identities=15% Similarity=0.211 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh---HHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy11935 3 AQDEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE---LREFYQTQLNNNQKAQDEIQTLLAKSA 79 (1334)
Q Consensus 3 ~l~~~~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~---~~er~~~~~~~~~~l~~~i~~l~~~~~ 79 (1334)
++.+++.+++.+..+..+.+-+|+.++..+++.+..+.+-..+...++.+ +-|--.++....+.+..++..-+..+.
T Consensus 19 KIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~ 98 (307)
T PF10481_consen 19 KIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVN 98 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHH
Confidence 46677888888888888888888888888888887777777777777766 777788888888888888887777777
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy11935 80 SIKTELREFYQTQLNNNVKEKLKEFQTQLDSAELTL 115 (1334)
Q Consensus 80 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 115 (1334)
-++..+... ++++.. ++.+++.++.+|+......
T Consensus 99 ~lEgQl~s~-Kkqie~-Leqelkr~KsELErsQ~~~ 132 (307)
T PF10481_consen 99 FLEGQLNSC-KKQIEK-LEQELKRCKSELERSQQAA 132 (307)
T ss_pred HHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHhh
Confidence 777777777 667777 7777777777776655544
No 258
>KOG0999|consensus
Probab=95.85 E-value=5.9 Score=47.41 Aligned_cols=21 Identities=0% Similarity=-0.015 Sum_probs=11.4
Q ss_pred CCeEeeec-cccccchhhhHHH
Q psy11935 325 RKYIEMQY-SMFSADSTHMNIV 345 (1334)
Q Consensus 325 ~G~iG~A~-dLV~~d~~~~~Ii 345 (1334)
.+-++.|. .||.|.+....+.
T Consensus 477 ~~tl~~A~~~lv~~SdeLaqly 498 (772)
T KOG0999|consen 477 TETLVNAQDELVTFSDELAQLY 498 (772)
T ss_pred cccchhhhHhHhhhhHHHHHHH
Confidence 44455565 5666665554443
No 259
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=95.85 E-value=0.0049 Score=61.31 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=18.9
Q ss_pred cccccccccccccccccccccC
Q psy11935 871 FLSELSGNVIDLCPVGALTSKP 892 (1334)
Q Consensus 871 ~~~~~cg~cv~~CpvGAl~~k~ 892 (1334)
..|+.||.|+++||+|||+...
T Consensus 82 ~~C~~Cg~Cv~~CP~~al~~~~ 103 (122)
T TIGR01971 82 GRCIFCGLCEEACPTDAIVLTP 103 (122)
T ss_pred ccCCCCCchhhhCCCccccccc
Confidence 4699999999999999996554
No 260
>CHL00065 psaC photosystem I subunit VII
Probab=95.85 E-value=0.0027 Score=58.12 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=19.9
Q ss_pred cccccccccccccccccccccCC
Q psy11935 871 FLSELSGNVIDLCPVGALTSKPY 893 (1334)
Q Consensus 871 ~~~~~cg~cv~~CpvGAl~~k~~ 893 (1334)
-.|+.||.|+.+||+|||.-+.|
T Consensus 46 ~~C~~C~~C~~~CP~~Ai~~~~~ 68 (81)
T CHL00065 46 EDCVGCKRCESACPTDFLSVRVY 68 (81)
T ss_pred CcCCChhhhhhhcCccccEEEEE
Confidence 36999999999999999976654
No 261
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=95.77 E-value=0.0041 Score=61.65 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=18.7
Q ss_pred cccccccccccccccccccccC
Q psy11935 871 FLSELSGNVIDLCPVGALTSKP 892 (1334)
Q Consensus 871 ~~~~~cg~cv~~CpvGAl~~k~ 892 (1334)
..|+.||.|+++||+|||....
T Consensus 73 ~~C~~Cg~Cv~~CP~~Ai~~~~ 94 (120)
T PRK08348 73 GRCVFCGQCVDVCPTGALQMSD 94 (120)
T ss_pred CcCcChhhhHHhCCcCcEEecc
Confidence 3699999999999999996443
No 262
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.75 E-value=0.0031 Score=79.97 Aligned_cols=56 Identities=21% Similarity=0.351 Sum_probs=38.2
Q ss_pred CCCcccccCCccchhhhhcccCccccccCCCCCceeccccccccccccccccccccccccccccC
Q psy11935 828 LDCPICDQGGECDLQDQSMAFGNDLGTTGRGSDMQVGTYVEKLFLSELSGNVIDLCPVGALTSKP 892 (1334)
Q Consensus 828 ~~C~~C~~~g~c~~~~~e~~g~~~~~~~~rg~~~~i~~~~~~~~~~~~cg~cv~~CpvGAl~~k~ 892 (1334)
+.|..|..|+.|+..|-. .++.....+....+. .-.|..||.|+++||+|||+..+
T Consensus 507 l~C~~c~~C~~C~~~Cp~----~ai~~~~~~~~~~i~-----~~~C~~Cg~C~~~CP~~Ai~~~~ 562 (564)
T PRK12771 507 LSCGNCFECDNCYGACPQ----DAIIKLGPGRRYHFD-----YDKCTGCHICADVCPCGAIEMGP 562 (564)
T ss_pred cccccccccchhhhhCCh----hheeeecCCceEEEe-----cccCcChhHHHhhcCcCceEecc
Confidence 889889899999999954 223222222211121 23699999999999999996543
No 263
>KOG0978|consensus
Probab=95.75 E-value=8.7 Score=48.58 Aligned_cols=97 Identities=14% Similarity=0.102 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Q psy11935 522 KLKEFQTQLDSAELTL-------HREFQQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRD 594 (1334)
Q Consensus 522 ~l~~~~~~~a~le~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (1334)
....++.+...++.++ ......+..++.+ ...+......+..++... ...++.......++....+.++
T Consensus 497 ~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq--~~~lt~~~~~l~~el~~~--~~~le~~kk~~~e~~~~~~~Lq 572 (698)
T KOG0978|consen 497 KHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQ--ERGLTSNESKLIKELTTL--TQSLEMLKKKAQEAKQSLEDLQ 572 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhHhhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444 4444444455555 455555555566677777 6667777777777777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 595 IKLKETNHLLKEESKKRELMAKKVESVM 622 (1334)
Q Consensus 595 ~~~~~l~~~l~~~~~~~~~l~~~i~~~~ 622 (1334)
.+.+..+..+..+.....+...+++..+
T Consensus 573 ~~~ek~~~~le~i~~~~~e~~~ele~~~ 600 (698)
T KOG0978|consen 573 IELEKSEAKLEQIQEQYAELELELEIEK 600 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888887777
No 264
>PRK02651 photosystem I subunit VII; Provisional
Probab=95.72 E-value=0.0042 Score=56.84 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=19.8
Q ss_pred cccccccccccccccccccccCC
Q psy11935 871 FLSELSGNVIDLCPVGALTSKPY 893 (1334)
Q Consensus 871 ~~~~~cg~cv~~CpvGAl~~k~~ 893 (1334)
..|..||.|+++||++||+.+.|
T Consensus 46 ~~C~~Cg~C~~~CP~~ai~~~~~ 68 (81)
T PRK02651 46 EDCVGCKRCETACPTDFLSIRVY 68 (81)
T ss_pred CcCCChhhhhhhcCCCceEEEEE
Confidence 46999999999999999976654
No 265
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=95.69 E-value=0.0069 Score=63.51 Aligned_cols=66 Identities=14% Similarity=0.105 Sum_probs=39.5
Q ss_pred CCCCCCcccccCCccchhh-hhcccCccccccCCCCCceecc---cccccccccccccccccccccccccc
Q psy11935 825 NHPLDCPICDQGGECDLQD-QSMAFGNDLGTTGRGSDMQVGT---YVEKLFLSELSGNVIDLCPVGALTSK 891 (1334)
Q Consensus 825 ~h~~~C~~C~~~g~c~~~~-~e~~g~~~~~~~~rg~~~~i~~---~~~~~~~~~~cg~cv~~CpvGAl~~k 891 (1334)
+|+. ...|+.+|+|+.+. .++.|+....+..+.....+.. ..-.+..|+.||.|+++||+||++..
T Consensus 64 ~~~~-i~~C~~~g~c~l~~~a~~~gv~~~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~C~~aCp~~ai~~~ 133 (165)
T TIGR01944 64 EGEA-INKCPPGGEAVILALAELLGVEPIPQPLDADAGTIQPPMVALIDEDNCIGCTKCIQACPVDAIVGA 133 (165)
T ss_pred cCCC-cCcCccccHHHHHHHHHHcCCCcccCCccccccccCCCceEEEECCcCCChhHHHHhCCccceEec
Confidence 4555 77788899998764 4455665443322111101000 11123359999999999999999654
No 266
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=95.65 E-value=0.0043 Score=69.22 Aligned_cols=18 Identities=17% Similarity=0.525 Sum_probs=15.6
Q ss_pred cccccccccccccccccc
Q psy11935 870 LFLSELSGNVIDLCPVGA 887 (1334)
Q Consensus 870 ~~~~~~cg~cv~~CpvGA 887 (1334)
.+.|..||+|..+||.|-
T Consensus 202 l~~C~~C~~C~~vCP~~I 219 (244)
T PRK12385 202 VWSCTFVGYCSEVCPKHV 219 (244)
T ss_pred hhhCcCcccccccCCCCC
Confidence 457999999999999864
No 267
>PRK10194 ferredoxin-type protein; Provisional
Probab=95.62 E-value=0.0045 Score=64.92 Aligned_cols=44 Identities=11% Similarity=0.114 Sum_probs=29.1
Q ss_pred cccccccccccccccccccccCCcccCCCCcceee---------eeecccCCCCCce
Q psy11935 871 FLSELSGNVIDLCPVGALTSKPYSFTARPWETRKT---------ESVDVLDAVGSNI 918 (1334)
Q Consensus 871 ~~~~~cg~cv~~CpvGAl~~k~~~~~~r~we~~~~---------~s~c~~C~~gC~i 918 (1334)
..|++||.|+++||+|||..... ..|.+..+ ...|..|..-|+.
T Consensus 66 ~~C~~C~~C~~~CP~~ai~~~~~----~~~~~~~~~~~~C~~~~~~~C~~C~~~CP~ 118 (163)
T PRK10194 66 NECSFCYACAQACPESLFSPRHT----RAWDLQFTIGDACLAYQSVECRRCQDSCEP 118 (163)
T ss_pred CCCCCchhhHhhCcchheecccc----cccceeeeecccCCCccCCCcCcchhhCCH
Confidence 36999999999999999976543 23443321 1346666666754
No 268
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.60 E-value=1.8 Score=52.94 Aligned_cols=7 Identities=0% Similarity=-0.244 Sum_probs=3.2
Q ss_pred ccccccc
Q psy11935 263 TDTNCPV 269 (1334)
Q Consensus 263 Vaeli~V 269 (1334)
+|+.+..
T Consensus 290 ~G~~v~~ 296 (423)
T TIGR01843 290 VGGVVQP 296 (423)
T ss_pred cCceecC
Confidence 3555443
No 269
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=95.55 E-value=3.8 Score=49.32 Aligned_cols=22 Identities=9% Similarity=0.013 Sum_probs=14.6
Q ss_pred ccccCCCcChHHHHHHhhhcCC
Q psy11935 281 YAPSSNQQYSIPTSNINQQYSM 302 (1334)
Q Consensus 281 nIVv~~e~~Ak~aI~~LK~~~~ 302 (1334)
+-+|.+.--|-..|+|--+.+.
T Consensus 492 ~e~ve~a~LaE~lIQY~NRYRs 513 (570)
T COG4477 492 EEVVENAVLAEQLIQYGNRYRS 513 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4456666677778888766543
No 270
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=95.55 E-value=0.0065 Score=58.15 Aligned_cols=29 Identities=21% Similarity=0.489 Sum_probs=22.1
Q ss_pred ccccccccccccccccccccCCcccCCCCccee
Q psy11935 872 LSELSGNVIDLCPVGALTSKPYSFTARPWETRK 904 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~k~~~~~~r~we~~~ 904 (1334)
.|++||.|+++||+|||..++. +.|.+..
T Consensus 67 ~C~~Cg~C~~~CP~~Ai~~~~~----~~~~~~~ 95 (101)
T TIGR00402 67 ECDFCGKCAEACPTNAFHPRFP----GDWLLRP 95 (101)
T ss_pred cCcCccChhhHCCccccCcCCC----CCceEEe
Confidence 6899999999999999975432 4455443
No 271
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=95.53 E-value=9.9 Score=47.71 Aligned_cols=45 Identities=18% Similarity=0.249 Sum_probs=21.3
Q ss_pred hhhHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 402 PALYTKTVRSVTLKISKEKIESLERNLQTETQRSRKLEEELQDTRQT 448 (1334)
Q Consensus 402 k~ei~~L~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~ 448 (1334)
+.+++..+..+ +........+...+..|+.++.+.+.++..+++.
T Consensus 287 ~~ELe~ak~~L--~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~ 331 (522)
T PF05701_consen 287 KKELEEAKKEL--EKAKEEASSLRASVESLRSELEKEKEELERLKER 331 (522)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444 4444444445555555555555554444444443
No 272
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=95.52 E-value=1.4 Score=58.14 Aligned_cols=35 Identities=6% Similarity=-0.062 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy11935 18 KTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE 52 (1334)
Q Consensus 18 ~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~ 52 (1334)
.+....-.+-++.++..++.++.+.+.+++..+.+
T Consensus 189 ~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~ 223 (754)
T TIGR01005 189 SESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQ 223 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555555554
No 273
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=95.45 E-value=5.8 Score=44.53 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=10.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q psy11935 62 NNNQKAQDEIQTLLAKSASIKTEL 85 (1334)
Q Consensus 62 ~~~~~l~~~i~~l~~~~~~~~~~l 85 (1334)
..+-++..++..|..+-..+.-++
T Consensus 56 kTi~qy~~QLn~L~aENt~L~SkL 79 (305)
T PF14915_consen 56 KTIFQYNGQLNVLKAENTMLNSKL 79 (305)
T ss_pred HHHHHHhhhHHHHHHHHHHHhHHH
Confidence 334444444444444444333333
No 274
>KOG4593|consensus
Probab=95.45 E-value=10 Score=47.31 Aligned_cols=15 Identities=7% Similarity=0.118 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11935 614 MAKKVESVMQSQLQQA 629 (1334)
Q Consensus 614 l~~~i~~~~~~~w~~~ 629 (1334)
.+.....++ .=|.-.
T Consensus 612 ~ekr~~rlk-~vF~~k 626 (716)
T KOG4593|consen 612 AEKRNQRLK-EVFASK 626 (716)
T ss_pred HHHHHHHHH-HHHHHH
Confidence 333344444 334333
No 275
>KOG0999|consensus
Probab=95.43 E-value=8.4 Score=46.22 Aligned_cols=90 Identities=16% Similarity=0.138 Sum_probs=51.2
Q ss_pred HHHHHHHHHhHhhhhhHHHHHHHHHHhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 131 AKQLKQISENEFKQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESK 210 (1334)
Q Consensus 131 ~~~ie~~~~~~~l~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~ 210 (1334)
.+--..+.++.+++|+++.+++.+. +..+..+++.+...++...-...+.+-..+..++.+..-+-..+-..+.++..
T Consensus 100 akE~~yl~kI~eleneLKq~r~el~--~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEE 177 (772)
T KOG0999|consen 100 AKEEYYLQKILELENELKQLRQELT--NVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEE 177 (772)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334456667777777777777777 55555555555555555444445555555555555555555555555555555
Q ss_pred HHHHHHHHHHHH
Q psy11935 211 KRELMAKKVESV 222 (1334)
Q Consensus 211 ~~~~~~~~~~~~ 222 (1334)
+--.+++.+..+
T Consensus 178 ENIsLQKqVs~L 189 (772)
T KOG0999|consen 178 ENISLQKQVSNL 189 (772)
T ss_pred hcchHHHHHHHH
Confidence 444444444444
No 276
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=95.39 E-value=0.0045 Score=68.83 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=25.1
Q ss_pred hhhhhccC-C-CCcccccc----------eeecCCCcccccccccCCC
Q psy11935 765 VTRQRSWG-L-IPSRVFLQ----------SINRHWIGPVAACAMPVMK 800 (1334)
Q Consensus 765 ~~~~~~~~-~-ip~lc~~~----------~v~~~~~~~~~aC~~~v~~ 800 (1334)
+++++..+ . +|++||+. .|..++ .|+.||.|++.+
T Consensus 32 l~~L~~~~~~~~~~l~~~~~c~~g~Cg~C~v~vnG-~~~laC~t~~~~ 78 (232)
T PRK05950 32 LDALIKIKNEIDPTLTFRRSCREGVCGSDAMNING-KNGLACITPISD 78 (232)
T ss_pred HHHHHHhCCccCCcceeeCCCCCCCCCCCEEEECC-cCccchhChHhH
Confidence 46666666 3 78888775 576654 566699999987
No 277
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.39 E-value=1.1 Score=57.93 Aligned_cols=11 Identities=9% Similarity=0.111 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q psy11935 28 QLNNNQKAQDE 38 (1334)
Q Consensus 28 l~~~~~~lq~~ 38 (1334)
+-+..+.++++
T Consensus 541 L~~a~~vlree 551 (717)
T PF10168_consen 541 LSQATKVLREE 551 (717)
T ss_pred HHHHHHHHHHH
Confidence 33344444444
No 278
>KOG0249|consensus
Probab=95.38 E-value=2.4 Score=52.20 Aligned_cols=38 Identities=8% Similarity=0.025 Sum_probs=27.0
Q ss_pred hhhHHHHHHHHhhCCCCCceEeccccccc---CCCCccccc
Q psy11935 353 ADDMRKYIEMLLEKPPGNPVSDLEAEVKD---SAGPMTSFL 390 (1334)
Q Consensus 353 ~e~ld~A~~iak~~~~r~RIVTLdGdvin---~GGSiTGGs 390 (1334)
.-+++.-...+.+...--||+|++--..| +||++.++.
T Consensus 53 ~lq~~~~e~~aqk~d~E~ritt~e~rflnaqre~t~~~d~n 93 (916)
T KOG0249|consen 53 KLQRDIREAMAQKEDMEERITTLEKRFLNAQRESTSIHDLN 93 (916)
T ss_pred HHhhhhhhHHhhhcccccccchHHHHHHhccCCCCCcccch
Confidence 34446666677777778899999988888 466565554
No 279
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=95.34 E-value=0.0037 Score=51.85 Aligned_cols=43 Identities=12% Similarity=0.024 Sum_probs=23.0
Q ss_pred ccccccccccccccccccccCCcccCCCCcceeeeeecccCCC
Q psy11935 872 LSELSGNVIDLCPVGALTSKPYSFTARPWETRKTESVDVLDAV 914 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~k~~~~~~r~we~~~~~s~c~~C~~ 914 (1334)
.|+.||.|+.+||++||.........+...+......|.+|+.
T Consensus 1 ~C~~C~~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~C~~C~~ 43 (52)
T PF12838_consen 1 KCIGCGACVEACPTGAIRLDEEENEEGKPKMVIDPDKCTGCGA 43 (52)
T ss_dssp C-SS--HHHHH-TTHHCEEEETTT-SSSTTSEETGGG----SH
T ss_pred CCCCcCchHHhcCccccCcccccccCCceEEEEechhCcCcCh
Confidence 3789999999999999977765333332334455667777753
No 280
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=95.26 E-value=6.5 Score=46.77 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 201 TNHLLKEESKKRELMAKKVESVMQSQLQQA 230 (1334)
Q Consensus 201 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (1334)
.+++.+.-...+..++++++.. ..++.++
T Consensus 53 FekkNqksa~~i~~lqkkL~~y-~~~l~el 81 (395)
T PF10267_consen 53 FEKKNQKSAQTIAQLQKKLEQY-HKRLKEL 81 (395)
T ss_pred HHHHhHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3334444455566666666666 4444444
No 281
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=95.25 E-value=6.4 Score=43.84 Aligned_cols=35 Identities=6% Similarity=0.081 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy11935 206 KEESKKRELMAKKVESVMQSQLQQAIHMITSDVTHL 241 (1334)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~srl 241 (1334)
..+.+.+....+.+.++ ...+..++.+++.+....
T Consensus 189 ~~m~kei~~~re~i~el-~e~I~~L~~eV~~L~~~~ 223 (258)
T PF15397_consen 189 QVMQKEIVQFREEIDEL-EEEIPQLRAEVEQLQAQA 223 (258)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Confidence 44444444444445555 555555555555444433
No 282
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.24 E-value=8 Score=44.90 Aligned_cols=94 Identities=12% Similarity=0.120 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q psy11935 168 KLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQAIHMITSDVTHLHTSKES 247 (1334)
Q Consensus 168 ~~~~~~~~~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~srl~~Vk~v 247 (1334)
.++..+++++.....++.....++++.+.++..+...+++...+..++..++..+ ++.+.+.+.--.....++...-..
T Consensus 204 ~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~a-e~~~~~~r~~t~~Ei~~Lk~~~~~ 282 (312)
T smart00787 204 TELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEA-EKKLEQCRGFTFKEIEKLKEQLKL 282 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3444455556666566665556666666666666666666666666666655555 443333222111122333333334
Q ss_pred hccCCCCCCcccccc
Q psy11935 248 LATRQPSEQSLIDST 262 (1334)
Q Consensus 248 L~~~~~~~~~gI~G~ 262 (1334)
|....+|.+.++-|+
T Consensus 283 Le~l~g~~~~~~~~~ 297 (312)
T smart00787 283 LQSLTGWKITKLSGN 297 (312)
T ss_pred HHHHhCCeeEeccCC
Confidence 455555645555443
No 283
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=95.23 E-value=3.7 Score=52.20 Aligned_cols=32 Identities=16% Similarity=0.196 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 419 EKIESLERNLQTETQRSRKLEEELQDTRQTCE 450 (1334)
Q Consensus 419 ~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~ 450 (1334)
.++..+++++.+++....+..++++.++.++.
T Consensus 168 ~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ 199 (563)
T TIGR00634 168 QAWLKARQQLKDRQQKEQELAQRLDFLQFQLE 199 (563)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 33344444444444444444455555544444
No 284
>KOG0249|consensus
Probab=95.20 E-value=3.1 Score=51.33 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 180 YEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESV 222 (1334)
Q Consensus 180 l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 222 (1334)
.-++.+.++.+++...+.+.+.+...+.+...++.+..+++++
T Consensus 214 Ale~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL 256 (916)
T KOG0249|consen 214 ALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQL 256 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3333444444555555555555555455554444444444444
No 285
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=95.19 E-value=0.0075 Score=81.45 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=21.1
Q ss_pred ccccccccccccccccc--cccccCCc
Q psy11935 870 LFLSELSGNVIDLCPVG--ALTSKPYS 894 (1334)
Q Consensus 870 ~~~~~~cg~cv~~CpvG--Al~~k~~~ 894 (1334)
+..|..||.|+++||++ ||+.+++.
T Consensus 738 ~~~C~gCg~Cv~~CP~~~~Al~m~~~~ 764 (1165)
T TIGR02176 738 PLDCTGCGNCVDICPAKEKALVMQPLA 764 (1165)
T ss_pred cccCcCccchhhhcCCCCccccccchh
Confidence 45799999999999996 88777663
No 286
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.17 E-value=7.6 Score=44.72 Aligned_cols=46 Identities=20% Similarity=0.280 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhh
Q psy11935 521 EKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQISEKPGATKL 568 (1334)
Q Consensus 521 ~~l~~~~~~~a~le~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ei~ 568 (1334)
.+|-.++.+...++..+.....++.++..+ .+..+.....+..|+.
T Consensus 133 ~qLEk~~~q~~qLe~d~qs~lDEkeEl~~E--RD~yk~K~~RLN~ELn 178 (319)
T PF09789_consen 133 EQLEKLREQIEQLERDLQSLLDEKEELVTE--RDAYKCKAHRLNHELN 178 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555554 4444444444444333
No 287
>KOG4809|consensus
Probab=95.16 E-value=10 Score=45.64 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 585 KLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQA 629 (1334)
Q Consensus 585 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~~~w~~~ 629 (1334)
++...++.-+++.+...+.+...++-..+-++.+..+++-..+++
T Consensus 518 el~~alektkQel~~tkarl~stqqslaEke~HL~nLr~errk~L 562 (654)
T KOG4809|consen 518 ELMNALEKTKQELDATKARLASTQQSLAEKEAHLANLRIERRKQL 562 (654)
T ss_pred HHHHHHHHHhhChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555554444444444444443333333
No 288
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=95.16 E-value=0.0085 Score=69.97 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=18.6
Q ss_pred ccccccccccccccccccccc
Q psy11935 871 FLSELSGNVIDLCPVGALTSK 891 (1334)
Q Consensus 871 ~~~~~cg~cv~~CpvGAl~~k 891 (1334)
..|..||.|+++||+|||+..
T Consensus 289 ~~C~gCg~C~~~CP~~AI~~~ 309 (312)
T PRK14028 289 QYCKGCGVCAEVCPTGAIQMV 309 (312)
T ss_pred ccCcCcCchhhhCCHhheEec
Confidence 469999999999999999654
No 289
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=95.15 E-value=5.4 Score=49.37 Aligned_cols=17 Identities=6% Similarity=0.220 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11935 170 MLDFKAKCEVYEAENKK 186 (1334)
Q Consensus 170 ~~~~~~~l~~l~~~l~~ 186 (1334)
+.+++.++.+++.++.+
T Consensus 245 i~~l~~~i~~~~~~~~~ 261 (457)
T TIGR01000 245 IDQLQKSIASYQVQKAG 261 (457)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 33334444444444333
No 290
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=95.15 E-value=15 Score=47.58 Aligned_cols=105 Identities=17% Similarity=0.143 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 520 KEKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKE 599 (1334)
Q Consensus 520 ~~~l~~~~~~~a~le~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (1334)
.+++..+......++..+.....+++..+.+ +.+.+..+..+..++... ..........+......++.+..+...
T Consensus 595 ~eelE~le~eK~~Le~~L~~~~d~lE~~~~q--L~E~E~~L~eLq~eL~~~--keS~s~~E~ql~~~~e~~e~le~~~~~ 670 (769)
T PF05911_consen 595 EEELEKLESEKEELEMELASCQDQLESLKNQ--LKESEQKLEELQSELESA--KESNSLAETQLKAMKESYESLETRLKD 670 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 3444444444444444444444454444444 445555555555444444 443444444444444555555555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 600 TNHLLKEESKKRELMAKKVESVMQSQLQQ 628 (1334)
Q Consensus 600 l~~~l~~~~~~~~~l~~~i~~~~~~~w~~ 628 (1334)
++..+..+..+...|+.++..-|+.+.+-
T Consensus 671 ~e~E~~~l~~Ki~~Le~Ele~er~~~~e~ 699 (769)
T PF05911_consen 671 LEAEAEELQSKISSLEEELEKERALSEEL 699 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 66666666666666777777666444443
No 291
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=95.12 E-value=0.017 Score=65.01 Aligned_cols=116 Identities=17% Similarity=0.235 Sum_probs=66.6
Q ss_pred CCcccccCCccchhhhhcccCccccccCCCCCceeccccccccccccccccccccccccccccCCcccCCCCcceeeeee
Q psy11935 829 DCPICDQGGECDLQDQSMAFGNDLGTTGRGSDMQVGTYVEKLFLSELSGNVIDLCPVGALTSKPYSFTARPWETRKTESV 908 (1334)
Q Consensus 829 ~C~~C~~~g~c~~~~~e~~g~~~~~~~~rg~~~~i~~~~~~~~~~~~cg~cv~~CpvGAl~~k~~~~~~r~we~~~~~s~ 908 (1334)
.+..|+ ..|++.. .++++++|... +. ...-.|..||.|+++|||||++-.. -.++...+-
T Consensus 143 ~vsGCP--n~C~r~~-----~~DigivGv~~-----P~-~~~E~c~gc~~cv~~C~~gAI~~~~-------~~l~id~~~ 202 (317)
T COG2221 143 AVSGCP--NDCTRPQ-----AHDIGIVGVWK-----PK-VDEELCRGCGKCVKVCPTGAITWDG-------KKLKIDGSK 202 (317)
T ss_pred EeecCC--ccccccc-----ccceeEEEeec-----Cc-cCHHHhchhHhHHHhCCCCceeecc-------ceEEEehhh
Confidence 355563 2355532 23677776554 11 1122588999999999999995433 456777788
Q ss_pred cccCCC---CCceEEEe--eCCEEEEecCCCCCCCCccccccccccccccccccccCCceEecCCCCeeecCHHHHHHHH
Q psy11935 909 DVLDAV---GSNIIVST--RTGEVLRVLPRLNEDINEEWLADKGRFAYDGLKRQRLLTPFVRNCDGQLVATEWEDALIAV 983 (1334)
Q Consensus 909 c~~C~~---gC~i~v~v--~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l~~~Rl~~PliR~~~g~~~~iSWdeAl~~i 983 (1334)
|..|+- -|+..+.- +.|-.+.|-|. . ||+ +-|.-.||+-. .+||++++.|
T Consensus 203 Ci~Cg~Ci~~Cp~~~~~~ek~g~~i~VGGk---------~---Gr~------~~r~g~~~~~~-------~~~dei~~ii 257 (317)
T COG2221 203 CIGCGKCIRACPKAAFRGEKVGIAILVGGK---------T---GRE------LGRVGKPLVPV-------EDEDEIIDII 257 (317)
T ss_pred ccCccHHhhhCChhhcchhhccEEEEEccc---------c---CCc------ccccccccccc-------CCHHHHHHHH
Confidence 887763 67622211 12223333332 1 322 23455565542 2999999988
Q ss_pred HHHhcc
Q psy11935 984 AQKLQT 989 (1334)
Q Consensus 984 a~~L~~ 989 (1334)
-.-+.-
T Consensus 258 ~~~~e~ 263 (317)
T COG2221 258 KKTIEV 263 (317)
T ss_pred HHHHHH
Confidence 877654
No 292
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=95.10 E-value=0.01 Score=66.61 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=18.6
Q ss_pred cccccccc--cccccccccccccC
Q psy11935 871 FLSELSGN--VIDLCPVGALTSKP 892 (1334)
Q Consensus 871 ~~~~~cg~--cv~~CpvGAl~~k~ 892 (1334)
..|.+|+. |+.+||+|||....
T Consensus 97 ~~C~~C~~~~Cv~aCPtgAL~~~~ 120 (254)
T PRK09476 97 IPCEMCEDIPCVKACPSGALDREL 120 (254)
T ss_pred CcCcCCCCCchhhccCccceEeec
Confidence 36999995 99999999997654
No 293
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=95.10 E-value=8.8 Score=44.57 Aligned_cols=67 Identities=10% Similarity=0.210 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy11935 169 LMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQAIHMITS 236 (1334)
Q Consensus 169 ~~~~~~~~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (1334)
.-..+..+++-+-.+.++.+.-+...++-......+.....+.+..++++-... ...|...+..+-.
T Consensus 210 ~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~-k~k~e~~n~~l~~ 276 (309)
T PF09728_consen 210 TEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTW-KSKWEKSNKALIE 276 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHH
Confidence 333444455555555555555555555555555555555555555555555555 5555444444433
No 294
>PRK10869 recombination and repair protein; Provisional
Probab=95.07 E-value=9.1 Score=48.41 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 197 KLKETNHLLKEESKKRELMAKKVESV 222 (1334)
Q Consensus 197 ~l~~l~~~~~~~~~~~~~~~~~~~~~ 222 (1334)
.++.++.++..+.+++.++..++...
T Consensus 342 ~l~~Le~e~~~l~~~l~~~A~~LS~~ 367 (553)
T PRK10869 342 DLETLALAVEKHHQQALETAQKLHQS 367 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333333333
No 295
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=95.06 E-value=0.011 Score=63.28 Aligned_cols=62 Identities=16% Similarity=0.167 Sum_probs=36.0
Q ss_pred CcccccCCccchhh-hhcccCccccccCCCCCce--ecccccccccccccccccccccccccccc
Q psy11935 830 CPICDQGGECDLQD-QSMAFGNDLGTTGRGSDMQ--VGTYVEKLFLSELSGNVIDLCPVGALTSK 891 (1334)
Q Consensus 830 C~~C~~~g~c~~~~-~e~~g~~~~~~~~rg~~~~--i~~~~~~~~~~~~cg~cv~~CpvGAl~~k 891 (1334)
-..|+++|+|+.+. .++.|+..-.+.+...... .....-....|+.||.|+++||+||+...
T Consensus 70 ~~~C~~~G~c~lq~la~~~Gv~~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~aCp~~ai~~~ 134 (191)
T PRK05113 70 INKCPPGGEATMLKLAELLGVEPQPLDGEAQEATPARKVAFIDEDNCIGCTKCIQACPVDAIVGA 134 (191)
T ss_pred cCcCCCCchHHHHHHHHHhCCCcccCccccccccccCceeEEeCCcCCCCChhhhhCCHhhhecc
Confidence 34677889998654 3445655433322111110 01111123359999999999999999543
No 296
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.02 E-value=6.5 Score=42.66 Aligned_cols=56 Identities=5% Similarity=0.186 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11935 460 VTVTLFLERLRSSHSKRSKNADSLVRLQKAQ-DEIQTLLAKSASIKTELREFYQTQL 515 (1334)
Q Consensus 460 ~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~-~~l~~l~~~~~~l~~~i~~~~~~~~ 515 (1334)
..++.+++.++......+..+..+..+...+ +.+..+..+...++.++..+.....
T Consensus 30 ksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~ 86 (201)
T PF13851_consen 30 KSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQ 86 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444344444444444444444 5555555555555555555444333
No 297
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=95.02 E-value=0.012 Score=64.20 Aligned_cols=50 Identities=20% Similarity=0.275 Sum_probs=29.2
Q ss_pred CccchhhhhcccCccccccCCCCCceecccc--cccccccccc--ccccccccccccc
Q psy11935 837 GECDLQDQSMAFGNDLGTTGRGSDMQVGTYV--EKLFLSELSG--NVIDLCPVGALTS 890 (1334)
Q Consensus 837 g~c~~~~~e~~g~~~~~~~~rg~~~~i~~~~--~~~~~~~~cg--~cv~~CpvGAl~~ 890 (1334)
|.|+.+|-. +++.+...+....+++.. .....|.+|+ .|+++||+|||..
T Consensus 59 g~Cv~aCP~----~ai~~~~~~~~~~~g~p~~~~~~~~C~~C~d~~Cv~~CP~~Ai~~ 112 (213)
T TIGR00397 59 GLCVEACPY----DILSLASWSDPAPLGTPFFTPREVPCRMCKDIPCARACPTGALDP 112 (213)
T ss_pred hHHHHhCCc----ccccccccccccccCCccccccCCcCCCCCCchHHhHcCHhhhch
Confidence 566998842 344443332222222211 1123599999 5999999999964
No 298
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=94.97 E-value=0.012 Score=65.41 Aligned_cols=19 Identities=21% Similarity=0.130 Sum_probs=16.1
Q ss_pred ccccccccccccccccccc
Q psy11935 870 LFLSELSGNVIDLCPVGAL 888 (1334)
Q Consensus 870 ~~~~~~cg~cv~~CpvGAl 888 (1334)
.+.|..||+|.++||.|--
T Consensus 205 i~~C~~C~~C~~vCPk~I~ 223 (239)
T PRK13552 205 VFGCMSLLGCEDNCPKDLP 223 (239)
T ss_pred cCCCcCcCccchhCCCCCc
Confidence 4679999999999998653
No 299
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=94.95 E-value=0.011 Score=60.79 Aligned_cols=56 Identities=23% Similarity=0.312 Sum_probs=36.5
Q ss_pred CCCCCcccccCCccchhhhhcccCccccccCCCCCceeccccccccccccccccccccccccccccCC
Q psy11935 826 HPLDCPICDQGGECDLQDQSMAFGNDLGTTGRGSDMQVGTYVEKLFLSELSGNVIDLCPVGALTSKPY 893 (1334)
Q Consensus 826 h~~~C~~C~~~g~c~~~~~e~~g~~~~~~~~rg~~~~i~~~~~~~~~~~~cg~cv~~CpvGAl~~k~~ 893 (1334)
+|+.|..| ....|...| -+.++... +..+....+ .|+.||.|+.+||.|||+-..+
T Consensus 49 ~pv~C~qC-edaPC~~vC----P~~AI~~~----~~~v~V~~e---kCiGC~~C~~aCPfGai~~~~~ 104 (165)
T COG1142 49 APVVCHHC-EDAPCAEVC----PVGAITRD----DGAVQVDEE---KCIGCKLCVVACPFGAITMVSY 104 (165)
T ss_pred cCCcCCCC-CCcchhhhC----chhheeec----CCceEEchh---hccCcchhhhcCCcceEEEEee
Confidence 45788888 445566666 44555544 111222222 5999999999999999976654
No 300
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=94.89 E-value=9.7 Score=47.86 Aligned_cols=153 Identities=10% Similarity=0.080 Sum_probs=91.7
Q ss_pred hhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy11935 158 KQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQAIHMITSD 237 (1334)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (1334)
.+.+.+...+-+..+++-++++.-...+.++..++..+.+=.-|.-.++.-..++..+++--..+ ++....+..++...
T Consensus 484 ~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~L-Q~Sma~lL~dls~D 562 (861)
T PF15254_consen 484 ELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTL-QNSMAKLLSDLSVD 562 (861)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhcccc
Confidence 44456666777777777888888888888888777777766666666666666666666666666 66666666666655
Q ss_pred hhhhhH----HHHHhc----------------------cCCCCCCcccccc------ccccccccccccc-----ccccc
Q psy11935 238 VTHLHT----SKESLA----------------------TRQPSEQSLIDST------TDTNCPVTQQYVP-----SSNQQ 280 (1334)
Q Consensus 238 ~srl~~----Vk~vL~----------------------~~~~~~~~gI~G~------Vaeli~Vp~~Y~~-----G~alQ 280 (1334)
.+|.+- .|.+|+ .-... ..-+++- -.+.+.-+..|+. |...-
T Consensus 563 ~ar~Kp~~nLTKSLLniyEkqlQ~dp~p~~tSIMsYLkkLE~~-~~f~~se~~~~~~~~e~~~p~~~ye~~l~s~~~~~~ 641 (861)
T PF15254_consen 563 SARCKPGNNLTKSLLNIYEKQLQHDPAPAHTSIMSYLKKLETN-HSFTHSEPLFSIKNEETMEPDRPYENVLPSEGPQHS 641 (861)
T ss_pred ccccCCcchhHHHHHHHHHHhhcCCCCCccchHHHHHHhhccc-cccccCCCcccCCcccccCCCccccccCCCCCCCCC
Confidence 555554 454441 11100 0001111 1233444456776 77777
Q ss_pred ccccCCCcChHHHHHHh----------------hhcCCCccceechhh
Q psy11935 281 YAPSSNQQYSIPTSNIN----------------QQYSMFSADSTHMNI 312 (1334)
Q Consensus 281 nIVv~~e~~Ak~aI~~L----------------K~~~~GRaTFLPl~~ 312 (1334)
|.....+..|-..|-++ -..++.-..++|+..
T Consensus 642 ~~~~~e~~sap~~~~~~~kq~sd~~ses~Tlied~~~lD~TiYIPfa~ 689 (861)
T PF15254_consen 642 NTRSMEEASAPGIIPTLSKQDSDTESESMTLIEDECNLDETIYIPFAR 689 (861)
T ss_pred CccccccccCCccccccccccccccccccceeccCcCCCceEEEeccc
Confidence 77777787776666555 234556666777654
No 301
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=94.88 E-value=0.0088 Score=69.82 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=16.7
Q ss_pred cccccccccccccccccccc
Q psy11935 872 LSELSGNVIDLCPVGALTSK 891 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~k 891 (1334)
.|+.||+|+.+||++||..+
T Consensus 202 ~C~~Cg~Cv~~CP~~Al~~~ 221 (314)
T TIGR02912 202 KCIGCGECVLKCPTGAWTRS 221 (314)
T ss_pred cCcCcchhhhhCCHhhcccC
Confidence 68899999999999998544
No 302
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=94.85 E-value=0.012 Score=67.02 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=17.3
Q ss_pred cccccccccccccccccccc
Q psy11935 871 FLSELSGNVIDLCPVGALTS 890 (1334)
Q Consensus 871 ~~~~~cg~cv~~CpvGAl~~ 890 (1334)
..|+.||+|+++||+|||+-
T Consensus 242 ~~C~~Cg~Cv~~CP~~Ai~~ 261 (271)
T PRK09477 242 GDCITCGRCIDVCSEDVFNF 261 (271)
T ss_pred ccCcChhHHHhhcCccceee
Confidence 36999999999999999943
No 303
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=94.84 E-value=4.1 Score=45.64 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy11935 519 VKEKLKEFQTQLDSAELTL 537 (1334)
Q Consensus 519 l~~~l~~~~~~~a~le~~~ 537 (1334)
+...+.+.+..+..++..+
T Consensus 118 aq~~l~~~~~~l~ei~~~L 136 (240)
T PF12795_consen 118 AQQQLSEARQRLQEIRNQL 136 (240)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444
No 304
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=94.84 E-value=8.8 Score=43.23 Aligned_cols=71 Identities=7% Similarity=0.146 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHhhh----HHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy11935 9 TLLAKSASIKTELREFYQTQ-LNNNQKAQDEIQTLLAKSASIKTE----LREFYQTQLNNNQKAQDEIQTLLAKSA 79 (1334)
Q Consensus 9 ~~~~~~e~~~~~~~~~l~~l-~~~~~~lq~~i~~l~~~ie~l~~~----~~er~~~~~~~~~~l~~~i~~l~~~~~ 79 (1334)
.++..+...+..+...+..- ..+.......+..+...+.+++.. .+.|....+.-.......+..+...++
T Consensus 5 ~KL~~i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~ 80 (247)
T PF06705_consen 5 SKLASINERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVE 80 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555554322 233333334444455555555544 555555555555555666665555533
No 305
>KOG1853|consensus
Probab=94.83 E-value=6.6 Score=42.44 Aligned_cols=41 Identities=12% Similarity=-0.001 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 182 AENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESV 222 (1334)
Q Consensus 182 ~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 222 (1334)
.........+++...+|...-....=+..++.+.+.-+...
T Consensus 126 rakRati~sleDfeqrLnqAIErnAfLESELdEke~llesv 166 (333)
T KOG1853|consen 126 RAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESV 166 (333)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33333344555566666666666666666666665555555
No 306
>KOG4809|consensus
Probab=94.79 E-value=13 Score=44.89 Aligned_cols=33 Identities=9% Similarity=-0.027 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11935 16 SIKTELREFYQTQLNNNQKAQDEIQTLLAKSAS 48 (1334)
Q Consensus 16 ~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~ 48 (1334)
+++++.+.+++.|.+.++.+|.++.+..+.+-.
T Consensus 331 EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~d 363 (654)
T KOG4809|consen 331 EEIESFRKENKDLKEKVNALQAELTEKESSLID 363 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554443333333
No 307
>KOG2991|consensus
Probab=94.79 E-value=7.4 Score=42.20 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=10.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Q psy11935 53 LREFYQTQLNNNQKAQDEIQTLLA 76 (1334)
Q Consensus 53 ~~er~~~~~~~~~~l~~~i~~l~~ 76 (1334)
+...|.|++...+++.++......
T Consensus 106 l~d~i~nLk~se~~lkqQ~~~a~R 129 (330)
T KOG2991|consen 106 LSDDITNLKESEEKLKQQQQEAAR 129 (330)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHH
Confidence 444444444444444444444433
No 308
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=94.72 E-value=0.024 Score=72.21 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=19.2
Q ss_pred EEECCE------EEEeCCCCcchhhhhhhc
Q psy11935 667 VFIDDK------KVMVDPGTTVLQPVAACA 690 (1334)
Q Consensus 667 ~~idg~------~~~v~~g~til~~~~ac~ 690 (1334)
|||.|. .|+||-||+|-++...|.
T Consensus 292 VTVtG~~v~~P~nv~v~iGTpv~~Ll~~~G 321 (695)
T PRK05035 292 VTLTGEAVARPGNVWARLGTPVRHLLNQAG 321 (695)
T ss_pred EEEECcccCCCceEEEeCCCCHHHHHHhcC
Confidence 556664 799999999999887775
No 309
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=94.71 E-value=3.6 Score=50.73 Aligned_cols=34 Identities=6% Similarity=0.028 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy11935 19 TELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE 52 (1334)
Q Consensus 19 ~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~ 52 (1334)
.....-..-++.++..++.++...+.+++..+.+
T Consensus 167 ~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~ 200 (444)
T TIGR03017 167 EPAQKAALWFVQQIAALREDLARAQSKLSAYQQE 200 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445555555566666666655555555555
No 310
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.62 E-value=3.8 Score=41.32 Aligned_cols=47 Identities=19% Similarity=0.254 Sum_probs=22.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 90 QTQLNNNVKEKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQI 137 (1334)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~i~~~~~~~ie~~ 137 (1334)
+..+.. ++.........|...+..+..-...++.++.+....+-++.
T Consensus 72 ~~~~~~-l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 72 QQEINE-LKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444 44444555555555555555444455555555554433333
No 311
>KOG4360|consensus
Probab=94.58 E-value=4.3 Score=48.29 Aligned_cols=24 Identities=8% Similarity=0.239 Sum_probs=12.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q psy11935 62 NNNQKAQDEIQTLLAKSASIKTEL 85 (1334)
Q Consensus 62 ~~~~~l~~~i~~l~~~~~~~~~~l 85 (1334)
...+-|+..++.++++...+..+-
T Consensus 159 ~~~EaL~ekLk~~~een~~lr~k~ 182 (596)
T KOG4360|consen 159 ELLEALQEKLKPLEEENTQLRSKA 182 (596)
T ss_pred HHHHHHHhhcCChHHHHHHHHHHH
Confidence 334455555555555555544444
No 312
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=94.53 E-value=5.1 Score=52.96 Aligned_cols=13 Identities=15% Similarity=0.115 Sum_probs=9.1
Q ss_pred ccccccccccccc
Q psy11935 263 TDTNCPVTQQYVP 275 (1334)
Q Consensus 263 Vaeli~Vp~~Y~~ 275 (1334)
+.-++..|+.|+.
T Consensus 32 ~~~~~~~~p~Y~A 44 (754)
T TIGR01005 32 AAYASFATPHYKA 44 (754)
T ss_pred HHHHhcCCceEEE
Confidence 3445678888887
No 313
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=94.47 E-value=0.017 Score=55.57 Aligned_cols=21 Identities=14% Similarity=-0.135 Sum_probs=17.6
Q ss_pred ccccccccccccccccccccc
Q psy11935 871 FLSELSGNVIDLCPVGALTSK 891 (1334)
Q Consensus 871 ~~~~~cg~cv~~CpvGAl~~k 891 (1334)
..|+.||.|+++||++||+-.
T Consensus 53 ~~C~~C~~C~~~CP~~AI~~~ 73 (103)
T PRK09626 53 ESCIGCRECELHCPDFAIYVA 73 (103)
T ss_pred ccCCCcCcchhhCChhhEEEe
Confidence 368999999999999999543
No 314
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=94.46 E-value=0.012 Score=71.28 Aligned_cols=31 Identities=16% Similarity=0.293 Sum_probs=24.2
Q ss_pred cccccccccccccccccccccCCcccCCCCc
Q psy11935 871 FLSELSGNVIDLCPVGALTSKPYSFTARPWE 901 (1334)
Q Consensus 871 ~~~~~cg~cv~~CpvGAl~~k~~~~~~r~we 901 (1334)
..|..||.|+++||+|||+.......+++|.
T Consensus 39 ~~C~~C~~C~~~CP~~AI~~~~~~~~~~~~t 69 (411)
T TIGR03224 39 DVCNGCMACVSPCPTGAIDNWRTMLRAKAYS 69 (411)
T ss_pred ccCcCHHHHHhhcCcccceeccccccccccc
Confidence 3699999999999999998665555555553
No 315
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=94.45 E-value=0.016 Score=55.82 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=18.4
Q ss_pred ccccccccccccccccccccc
Q psy11935 871 FLSELSGNVIDLCPVGALTSK 891 (1334)
Q Consensus 871 ~~~~~cg~cv~~CpvGAl~~k 891 (1334)
..|+.||.|+++||++||+-+
T Consensus 81 ~~C~~Cg~Cv~~CP~~AI~~~ 101 (105)
T PRK09624 81 DYCKGCGICANECPTKAIEMV 101 (105)
T ss_pred hhCCCcCchhhhcCcCcEEEe
Confidence 369999999999999999654
No 316
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=94.40 E-value=0.023 Score=65.98 Aligned_cols=51 Identities=22% Similarity=0.268 Sum_probs=32.2
Q ss_pred Cccchhhhh--cccCccccccCCCCCceeccc--------ccccccccccccccccccccc
Q psy11935 837 GECDLQDQS--MAFGNDLGTTGRGSDMQVGTY--------VEKLFLSELSGNVIDLCPVGA 887 (1334)
Q Consensus 837 g~c~~~~~e--~~g~~~~~~~~rg~~~~i~~~--------~~~~~~~~~cg~cv~~CpvGA 887 (1334)
|.|...|=- ..|.+..+-.+.|+-..+.++ .+.+..|.+||.|..+||+.-
T Consensus 314 GaC~n~CPvY~~iGgh~y~~~Y~GPiG~v~s~~~~g~~~~~~~~~~c~lcg~C~evCPv~I 374 (459)
T COG1139 314 GACLNHCPVYRHIGGHAYGSIYPGPIGVVWSPILGGYDAAGDLPYACSLCGACTEVCPVKI 374 (459)
T ss_pred hHhhhcChhhhhccCeecccccCCcccceecchhcchhhccccchhhccccCCCCcCCCCC
Confidence 555777732 236666666665654433332 234556999999999999954
No 317
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=94.32 E-value=0.019 Score=54.58 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=19.4
Q ss_pred ccccccccccccccccccccccCC
Q psy11935 870 LFLSELSGNVIDLCPVGALTSKPY 893 (1334)
Q Consensus 870 ~~~~~~cg~cv~~CpvGAl~~k~~ 893 (1334)
...|+.||.|+.+||++|+.-...
T Consensus 62 ~~~C~~C~~C~~~Cp~~a~~~~~~ 85 (99)
T COG1145 62 PDLCVLCGACLKVCPVDALSIAEE 85 (99)
T ss_pred cccCccccchHhhCCcCCeehhhc
Confidence 346999999999999999855544
No 318
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=94.31 E-value=0.024 Score=69.19 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=21.2
Q ss_pred ccccccccccccccc-ccccccCCcc
Q psy11935 871 FLSELSGNVIDLCPV-GALTSKPYSF 895 (1334)
Q Consensus 871 ~~~~~cg~cv~~Cpv-GAl~~k~~~~ 895 (1334)
..|+.||.|+.+||+ |||+..++..
T Consensus 377 ~~C~~Cg~C~~~CP~~~Ai~~~~~~~ 402 (420)
T PRK08318 377 EECVGCNLCAHVCPVEGCITMGEVKF 402 (420)
T ss_pred hhCcccchHHhhCCCCCCEEEeccCC
Confidence 359999999999999 9997776644
No 319
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=94.29 E-value=0.02 Score=67.31 Aligned_cols=69 Identities=13% Similarity=0.058 Sum_probs=39.3
Q ss_pred CCCCCcccccCCccchhhhhcccCccccccCCCCCceeccccccccccccccccccccccccccccCCcccCCCCcceee
Q psy11935 826 HPLDCPICDQGGECDLQDQSMAFGNDLGTTGRGSDMQVGTYVEKLFLSELSGNVIDLCPVGALTSKPYSFTARPWETRKT 905 (1334)
Q Consensus 826 h~~~C~~C~~~g~c~~~~~e~~g~~~~~~~~rg~~~~i~~~~~~~~~~~~cg~cv~~CpvGAl~~k~~~~~~r~we~~~~ 905 (1334)
.|..|..| .++.|+..|-. .++..........|. .-.|+.||.|+.+||.||+.... +. .+
T Consensus 179 ~p~~C~HC-~nP~CV~ACPt----GAI~k~eedGiV~ID-----~dkCiGCg~CV~ACPygAI~~n~--------~~-g~ 239 (492)
T TIGR01660 179 LPRLCEHC-LNPACVASCPS----GAIYKREEDGIVLID-----QDKCRGWRMCISGCPYKKIYFNW--------KT-GK 239 (492)
T ss_pred CCCcCcCC-CcccchhhCcc----CCeEEecCCCeEEEe-----hhhccChHHHHHhCCCCCcEecC--------CC-Cc
Confidence 35567777 23467888842 333221111111111 23699999999999999984322 21 23
Q ss_pred eeecccCC
Q psy11935 906 ESVDVLDA 913 (1334)
Q Consensus 906 ~s~c~~C~ 913 (1334)
..-|.+|.
T Consensus 240 ~~KCd~C~ 247 (492)
T TIGR01660 240 SEKCIFCY 247 (492)
T ss_pred cccCCCCh
Confidence 44688885
No 320
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=94.23 E-value=3.7 Score=43.65 Aligned_cols=92 Identities=17% Similarity=0.204 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 521 EKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKET 600 (1334)
Q Consensus 521 ~~l~~~~~~~a~le~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 600 (1334)
+++..+..+...+...+......+..++.+ +.....+...+......+ ..+...+ ..+.+...|.........+
T Consensus 84 eKl~~~~~~~~~l~~~l~~~~~~~~~~r~~--l~~~k~~r~k~~~~~~~l--~~~~~~~--~~P~ll~Dy~~~~~~~~~l 157 (177)
T PF13870_consen 84 EKLHFLSEELERLKQELKDREEELAKLREE--LYRVKKERDKLRKQNKKL--RQQGGLL--GVPALLRDYDKTKEEVEEL 157 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH--HHhcCCC--CCcHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444 444444433333333333 2222221 2245555566666666666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11935 601 NHLLKEESKKRELMAKKV 618 (1334)
Q Consensus 601 ~~~l~~~~~~~~~l~~~i 618 (1334)
+..+..++.....++..+
T Consensus 158 ~~~i~~l~rk~~~l~~~i 175 (177)
T PF13870_consen 158 RKEIKELERKVEILEMRI 175 (177)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 666666666555555443
No 321
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=94.21 E-value=0.017 Score=60.31 Aligned_cols=49 Identities=12% Similarity=0.093 Sum_probs=33.8
Q ss_pred ccccccccccccccccccccCCccc----CCCCcceeeeeecccCCC---CCceEE
Q psy11935 872 LSELSGNVIDLCPVGALTSKPYSFT----ARPWETRKTESVDVLDAV---GSNIIV 920 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~k~~~~~----~r~we~~~~~s~c~~C~~---gC~i~v 920 (1334)
.|+.|+.|+.+||++||+--...-. -+++-...-.+-|.||+. -|+..+
T Consensus 56 ~CIgC~lCa~iCP~~aI~m~~~~~~~~g~~~~~~~~In~grCIfCg~C~e~CPt~A 111 (172)
T COG1143 56 KCIGCGLCANICPANAITMETAERKVDGRKKPKRPDINLGRCIFCGLCVEVCPTGA 111 (172)
T ss_pred CCcchhHHHhhCCcCceEEEEcccCCCCccccccceeccccccccCchhhhCchhh
Confidence 4999999999999999976654322 344444555566777664 676554
No 322
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=94.21 E-value=0.0099 Score=52.18 Aligned_cols=19 Identities=26% Similarity=0.672 Sum_probs=17.6
Q ss_pred ccccccccccccccccccc
Q psy11935 873 SELSGNVIDLCPVGALTSK 891 (1334)
Q Consensus 873 ~~~cg~cv~~CpvGAl~~k 891 (1334)
|..||.|+++||+|||...
T Consensus 2 C~~C~~C~~~CP~~AI~~~ 20 (67)
T PF13484_consen 2 CITCGKCAEACPTGAISGE 20 (67)
T ss_pred CcchhHHHHhCcHhhccCC
Confidence 7899999999999999777
No 323
>PRK10869 recombination and repair protein; Provisional
Probab=94.18 E-value=13 Score=46.90 Aligned_cols=31 Identities=13% Similarity=0.125 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 593 RDIKLKETNHLLKEESKKRELMAKKVESVMQ 623 (1334)
Q Consensus 593 ~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~ 623 (1334)
....+..+++.+..+.++...+.+++.+.|+
T Consensus 339 ~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~ 369 (553)
T PRK10869 339 QEDDLETLALAVEKHHQQALETAQKLHQSRQ 369 (553)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555553
No 324
>KOG4360|consensus
Probab=94.14 E-value=2.6 Score=50.12 Aligned_cols=101 Identities=14% Similarity=0.098 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 518 NVKEKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKL 597 (1334)
Q Consensus 518 ~l~~~l~~~~~~~a~le~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (1334)
.+-.++.+...+...+.+.+.+...+..++..+ ...+-.++.++.++++.+ .-+.+++..-+...+..-.++..+.
T Consensus 202 ~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee--~skLlsql~d~qkk~k~~--~~Ekeel~~~Lq~~~da~~ql~aE~ 277 (596)
T KOG4360|consen 202 DCVKELRDTNTQARSGQEELQSKTKELSRQQEE--NSKLLSQLVDLQKKIKYL--RHEKEELDEHLQAYKDAQRQLTAEL 277 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhHHHHHHH--HHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 344777888888888888888888888888888 888888888888888888 7777766666666666667778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 598 KETNHLLKEESKKRELMAKKVESVM 622 (1334)
Q Consensus 598 ~~l~~~l~~~~~~~~~l~~~i~~~~ 622 (1334)
.+++.+..++.+...+.+++++.+|
T Consensus 278 ~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 278 EELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8888888888888888888888887
No 325
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=94.14 E-value=7.3 Score=48.18 Aligned_cols=18 Identities=0% Similarity=0.049 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11935 174 KAKCEVYEAENKKLKAEL 191 (1334)
Q Consensus 174 ~~~l~~l~~~l~~~~~~l 191 (1334)
..++.+++..+.+...++
T Consensus 242 ~~~i~~l~~~i~~~~~~~ 259 (457)
T TIGR01000 242 QQQIDQLQKSIASYQVQK 259 (457)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 326
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.13 E-value=2.3 Score=41.81 Aligned_cols=47 Identities=15% Similarity=0.247 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy11935 4 QDEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIK 50 (1334)
Q Consensus 4 l~~~~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~ 50 (1334)
+..+.+.+..++.++..++.++..+..+.+.+.+++.++..+.+.++
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~ 64 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELR 64 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888888888888888888888777766553
No 327
>COG1146 Ferredoxin [Energy production and conversion]
Probab=94.11 E-value=0.024 Score=50.01 Aligned_cols=22 Identities=27% Similarity=0.215 Sum_probs=18.4
Q ss_pred cccccccccccccccccccccc
Q psy11935 870 LFLSELSGNVIDLCPVGALTSK 891 (1334)
Q Consensus 870 ~~~~~~cg~cv~~CpvGAl~~k 891 (1334)
+-.|+.||.|+.+||++||.-.
T Consensus 40 ~e~C~~C~~C~~~CP~~aI~~~ 61 (68)
T COG1146 40 PEECIDCGLCELACPVGAIKVD 61 (68)
T ss_pred cccCccchhhhhhCCcceEEEe
Confidence 3369999999999999999543
No 328
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.05 E-value=0.025 Score=73.15 Aligned_cols=58 Identities=12% Similarity=0.196 Sum_probs=34.2
Q ss_pred CCCcccccCCccchhhhhcccCccccccCCCCCceecc----ccccccccccccc--ccccccccccccc
Q psy11935 828 LDCPICDQGGECDLQDQSMAFGNDLGTTGRGSDMQVGT----YVEKLFLSELSGN--VIDLCPVGALTSK 891 (1334)
Q Consensus 828 ~~C~~C~~~g~c~~~~~e~~g~~~~~~~~rg~~~~i~~----~~~~~~~~~~cg~--cv~~CpvGAl~~k 891 (1334)
+-|..| +.+|....+...+....++....+.. ....+..|..|+. |+++||+|||...
T Consensus 13 ~gC~~C------~~aC~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~C~~C~~~~C~~~CP~~ai~~~ 76 (654)
T PRK12769 13 LGCHAC------EIACVMAHNDEQHVLSQHHFHPRITVIKHQQQRSAVTCHHCEDAPCARSCPNGAISHV 76 (654)
T ss_pred cChhHH------HHHhhhhhccCCcccccccccceEEEeccccccCCccCCCCCChhHhhhCCccceecc
Confidence 777777 89997765444433333333322221 1123456888886 8888888888543
No 329
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=94.03 E-value=10 Score=40.64 Aligned_cols=50 Identities=12% Similarity=0.210 Sum_probs=35.9
Q ss_pred ccchhhHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 399 FNEPALYTKTVRSVTLKISKEKIESLERNLQTETQRSRKLEEELQDTRQTCE 450 (1334)
Q Consensus 399 l~Rk~ei~~L~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~ 450 (1334)
=.+..||.-|+.++ .+.++++..--.+|-.++..+...+.++......+.
T Consensus 6 Cqk~GEIsLLKqQL--ke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~ 55 (202)
T PF06818_consen 6 CQKSGEISLLKQQL--KESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQ 55 (202)
T ss_pred hhhhhhHHHHHHHH--HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 35677899999888 888888777777777777777666666655555544
No 330
>PRK09898 hypothetical protein; Provisional
Probab=94.03 E-value=0.022 Score=62.34 Aligned_cols=48 Identities=10% Similarity=0.047 Sum_probs=28.5
Q ss_pred cccccccc--ccccccccccccccCCcccCCCCccee-eeeecccCCCCCceEE
Q psy11935 870 LFLSELSG--NVIDLCPVGALTSKPYSFTARPWETRK-TESVDVLDAVGSNIIV 920 (1334)
Q Consensus 870 ~~~~~~cg--~cv~~CpvGAl~~k~~~~~~r~we~~~-~~s~c~~C~~gC~i~v 920 (1334)
+..|..|+ .|+.+||+|||+..+... .+.+.. .-.-|..|...|+..+
T Consensus 120 ~~~C~~C~~~~C~~~CP~gAi~~~~~~g---~v~vd~~~CigC~~C~~aCP~~a 170 (208)
T PRK09898 120 ADTCRQCKEPQCMNVCPIGAITWQQKEG---CITVDHKRCIGCSACTTACPWMM 170 (208)
T ss_pred CccCCCccCcchhhhCCcceEEeeccCC---eEEeccccCCCcCcccccCCCCC
Confidence 44699998 799999999997543211 111111 1123555666787543
No 331
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=93.99 E-value=0.026 Score=65.47 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=17.8
Q ss_pred cccccccccccccccccccccc
Q psy11935 870 LFLSELSGNVIDLCPVGALTSK 891 (1334)
Q Consensus 870 ~~~~~~cg~cv~~CpvGAl~~k 891 (1334)
+..|..||.|+.+||++||...
T Consensus 81 ~~~C~~Cg~C~~~CP~~Ai~~~ 102 (295)
T TIGR02494 81 REKCTHCGKCTEACPSGALSIV 102 (295)
T ss_pred hhhcCchhHhhccCcHhHHhhh
Confidence 3468999999999999999554
No 332
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=93.97 E-value=0.021 Score=55.05 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=17.9
Q ss_pred ccccccccccccccccccccc
Q psy11935 871 FLSELSGNVIDLCPVGALTSK 891 (1334)
Q Consensus 871 ~~~~~cg~cv~~CpvGAl~~k 891 (1334)
..|..||.|+++||++||+..
T Consensus 81 ~~C~~Cg~Cv~~CP~~AI~~~ 101 (105)
T PRK09623 81 DYCKGCGICANECPTKAITMV 101 (105)
T ss_pred hhCcCcchhhhhcCcCcEEec
Confidence 358999999999999999543
No 333
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=93.97 E-value=3.1 Score=45.69 Aligned_cols=27 Identities=19% Similarity=0.329 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 596 KLKETNHLLKEESKKRELMAKKVESVM 622 (1334)
Q Consensus 596 ~~~~l~~~l~~~~~~~~~l~~~i~~~~ 622 (1334)
..++|++++....+++..++.++..+.
T Consensus 163 k~e~L~ekynkeveerkrle~e~k~lq 189 (307)
T PF10481_consen 163 KYEELQEKYNKEVEERKRLEAEVKALQ 189 (307)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 344555556656666666666665544
No 334
>KOG1899|consensus
Probab=93.88 E-value=11 Score=46.11 Aligned_cols=48 Identities=17% Similarity=0.090 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy11935 5 DEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE 52 (1334)
Q Consensus 5 ~~~~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~ 52 (1334)
..++..+..++...+.+.-+..-|.++++..-+.|..++--|+....+
T Consensus 107 ~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~k 154 (861)
T KOG1899|consen 107 PEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNK 154 (861)
T ss_pred hHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 455666666666666666666666666666666666655555543333
No 335
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=93.81 E-value=0.023 Score=62.51 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=20.6
Q ss_pred cccccccccccccccccccccccCC
Q psy11935 869 KLFLSELSGNVIDLCPVGALTSKPY 893 (1334)
Q Consensus 869 ~~~~~~~cg~cv~~CpvGAl~~k~~ 893 (1334)
.+..|..||.|.-+||.+||+.++.
T Consensus 97 ~~~lC~GCgaC~~~CP~~AI~~~~~ 121 (284)
T COG1149 97 NPDLCEGCGACSIVCPEPAIEEEPV 121 (284)
T ss_pred CcccccCcccceeeCCCcccccccc
Confidence 3557999999999999999976654
No 336
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=93.77 E-value=0.024 Score=64.00 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=17.3
Q ss_pred ccccccccccccccccccc
Q psy11935 871 FLSELSGNVIDLCPVGALT 889 (1334)
Q Consensus 871 ~~~~~cg~cv~~CpvGAl~ 889 (1334)
..|+.||+|+++||++|++
T Consensus 234 ~~C~~Cg~Cv~~CP~~Ai~ 252 (255)
T TIGR02163 234 GDCTLCGRCIDVCHEDVLG 252 (255)
T ss_pred ccccchhHHHHhCCccccc
Confidence 3699999999999999994
No 337
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=93.76 E-value=17 Score=45.47 Aligned_cols=27 Identities=11% Similarity=-0.135 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy11935 24 FYQTQLNNNQKAQDEIQTLLAKSASIK 50 (1334)
Q Consensus 24 ~l~~l~~~~~~lq~~i~~l~~~ie~l~ 50 (1334)
+..+++..++.++........++..++
T Consensus 215 ~~~e~~~~l~l~~~~~~~~~~el~~Yk 241 (511)
T PF09787_consen 215 ESGELQEQLELLKAEGESEEAELQQYK 241 (511)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333333333333333333333333333
No 338
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.74 E-value=8.7 Score=38.87 Aligned_cols=93 Identities=13% Similarity=0.199 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh---HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy11935 20 ELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE---LREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQLNNN 96 (1334)
Q Consensus 20 ~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~---~~er~~~~~~~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~ 96 (1334)
....+|...+...+.+++.+..+..+++..+.. +.-...+.+..+..++.++..+..++..+..++..+ .+....
T Consensus 7 ~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l-~sEk~~- 84 (140)
T PF10473_consen 7 HVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTL-RSEKEN- 84 (140)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-
Confidence 344445555555555555555555555554444 444444444555555555555555555555555444 333333
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11935 97 VKEKLKEFQTQLDSAELT 114 (1334)
Q Consensus 97 ~~~~~~~~~~~l~~~~~~ 114 (1334)
+...+.+.+.++.+++..
T Consensus 85 L~k~lq~~q~kv~eLE~~ 102 (140)
T PF10473_consen 85 LDKELQKKQEKVSELESL 102 (140)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 339
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=93.68 E-value=24 Score=43.80 Aligned_cols=28 Identities=11% Similarity=0.044 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 595 IKLKETNHLLKEESKKRELMAKKVESVM 622 (1334)
Q Consensus 595 ~~~~~l~~~l~~~~~~~~~l~~~i~~~~ 622 (1334)
.....|++.+..+..+.....+.+...|
T Consensus 342 ~~~~~Le~~~~~l~~~~~~~A~~Ls~~R 369 (557)
T COG0497 342 ESLEALEKEVKKLKAELLEAAEALSAIR 369 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555555555555
No 340
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=93.66 E-value=22 Score=43.34 Aligned_cols=20 Identities=10% Similarity=0.124 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11935 120 QQKEKTIVENAAKQLKQISE 139 (1334)
Q Consensus 120 ~~~~~~i~~~~~~~ie~~~~ 139 (1334)
+.+..+.+++.+++++..++
T Consensus 109 ~~L~~~F~~LA~~ile~k~~ 128 (475)
T PRK10361 109 QRLSEQFENLANRIFEHSNR 128 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555666665555554
No 341
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.65 E-value=0.9 Score=49.09 Aligned_cols=118 Identities=13% Similarity=0.138 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh---HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 11 LAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE---LREFYQTQLNNNQKAQDEIQTLLAKSASIKTELRE 87 (1334)
Q Consensus 11 ~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~---~~er~~~~~~~~~~l~~~i~~l~~~~~~~~~~l~~ 87 (1334)
+..++..+..++.++.++......+...+..++.+++.++.. ...++..+......++.++..+..+ +.+
T Consensus 69 ~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~-------l~e 141 (194)
T PF08614_consen 69 ISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEE-------LKE 141 (194)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Confidence 344556666677777777777777777777777777766665 4444444444444444444444444 333
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy11935 88 FYQTQLNNNVKEKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQISENE 141 (1334)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~i~~~~~~~ie~~~~~~ 141 (1334)
. .+.+.. ++.++..++-.+..+++++..+. .+-.++-...++.+.+.+
T Consensus 142 k-~k~~e~-l~DE~~~L~l~~~~~e~k~~~l~----~En~~Lv~Rwm~~k~~eA 189 (194)
T PF08614_consen 142 K-NKANEI-LQDELQALQLQLNMLEEKLRKLE----EENRELVERWMQRKAQEA 189 (194)
T ss_dssp H-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 3 333344 44455555555544444443332 223344444455555444
No 342
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=93.64 E-value=0.58 Score=48.59 Aligned_cols=118 Identities=13% Similarity=0.157 Sum_probs=68.6
Q ss_pred cCHHHHHHHHHHHhccCCEEEEeCCcC-CHHHHHHHHHHHHHhCCCccccCCCCC--------cchhhhhhhhhccCCCC
Q psy11935 974 TEWEDALIAVAQKLQTSEVAGVVGSLA-DAEAMVALKDLLNKLGSEDLYTEYAFP--------LEGAGTDLRANYLLNNK 1044 (1334)
Q Consensus 974 iSWdeAl~~ia~~L~~~~i~~~~g~~~-~~e~~~~~~~l~~~lGs~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 1044 (1334)
++-++|.+.+.+. .+..+++|+.+ +......+.+|++++|.+.+.+..++. ..+...+....++....
T Consensus 15 ~~p~~aa~lLk~A---KRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~~~~~~~kgv~~~~~~lg~~g~~~~~p~ 91 (162)
T TIGR00315 15 VSPKLVAMMIKRA---KRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADTYRALIEAGIESEEMNLHEITQFLADPS 91 (162)
T ss_pred cCHHHHHHHHHcC---CCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCccccccccCCeecCCCCHHHHHHhccCch
Confidence 4555555544322 55666666544 345667788899999988665543200 01111111122333456
Q ss_pred cccc---cccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCCCCcccccc
Q psy11935 1045 IAGA---EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEH 1098 (1334)
Q Consensus 1045 ~~di---e~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~~~t~~~a~ 1098 (1334)
+..+ .++|+||++|++.....-++. -++.. ...|.|.+++.+.+.+.+..
T Consensus 92 ~e~~~g~g~~DlvlfvG~~~y~~~~~ls-~lk~f---~~~~~i~l~~~y~pnA~~Sf 144 (162)
T TIGR00315 92 WEGFDGEGNYDLVLFLGIIYYYLSQMLS-SLKHF---SHIVTIAIDKYYQPNADYSF 144 (162)
T ss_pred hhhccCCCCcCEEEEeCCcchHHHHHHH-HHHhh---cCcEEEEecCCCCCCCceec
Confidence 6777 899999999999844433322 23333 25899999988766555544
No 343
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=93.52 E-value=0.052 Score=49.74 Aligned_cols=33 Identities=33% Similarity=0.399 Sum_probs=19.5
Q ss_pred CCCcEEEEECCEEEEeCCCCcchhhhhhhcCCCCCCCEEEcCCH
Q psy11935 661 NNEKFEVFIDDKKVMVDPGTTVLQPVAACAMPVMKGWRVKTNSE 704 (1334)
Q Consensus 661 ~~~~~~~~idg~~~~v~~g~til~~~~ac~~~~~~gm~v~t~s~ 704 (1334)
...+--+.|||.+- | +||.|||.+||+|.|+||
T Consensus 50 ~C~~C~Vev~g~~~-v----------~AC~t~v~~GM~V~T~s~ 82 (82)
T PF13510_consen 50 SCRLCLVEVDGEPN-V----------RACSTPVEDGMVVETQSP 82 (82)
T ss_dssp T-SS-EEEESSEEE-E----------ETTT-B--TTEEEE----
T ss_pred ccceEEEEECCCcc-e----------EcccCCCcCCcEEEEeEC
Confidence 45566688998773 3 799999999999999886
No 344
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=93.49 E-value=0.086 Score=56.78 Aligned_cols=78 Identities=18% Similarity=0.285 Sum_probs=56.3
Q ss_pred CcEEEEECCEEE--EeCCCCcchh------------------------------hhhhhcCCC--CCCCEEEcCCHHHHH
Q psy11935 663 EKFEVFIDDKKV--MVDPGTTVLQ------------------------------PVAACAMPV--MKGWRVKTNSEMTRR 708 (1334)
Q Consensus 663 ~~~~~~idg~~~--~v~~g~til~------------------------------~~~ac~~~~--~~gm~v~t~s~~~~~ 708 (1334)
..|+|+|||+++ +|++++|+|+ ++.||-+++ .+|+.|.|---.-..
T Consensus 50 ~~i~~~VNG~~~~~~v~~~~tLLd~LR~~l~ltGtK~GC~~G~CGACTVlVdG~~v~SCl~la~~~~G~~ItTiEGL~~~ 129 (217)
T PRK11433 50 SPVTLKVNGKTEQLEVDTRTTLLDALREHLHLTGTKKGCDHGQCGACTVLVNGRRLNACLTLAVMHQGAEITTIEGLGSP 129 (217)
T ss_pred ceEEEEECCEEEEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCcCceEEEECCEEeeeeeeehhhcCCCEEEEeCCcCCC
Confidence 458999999885 7779999999 788999998 899999992111000
Q ss_pred -HHHHHHHHHHHhCCCCCCCCCCCCCCchhhhH
Q psy11935 709 -AREGVMEFLLVNHPLDCPICDQGGECDLQDQS 740 (1334)
Q Consensus 709 -~r~~~~~~ll~~hp~~C~~c~~~g~c~lq~~~ 740 (1334)
.-.-+-+-++.+|-.-|.+|.-|--|-...+.
T Consensus 130 ~~lhpvQ~Af~~~~a~QCGyCTPG~imsa~alL 162 (217)
T PRK11433 130 DNLHPMQAAFVKHDGFQCGYCTPGQICSSVAVL 162 (217)
T ss_pred CCCCHHHHHHHHcCCCcCCCCCccHHHHHHHHH
Confidence 11224445567788899999887776666555
No 345
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=93.49 E-value=5 Score=45.24 Aligned_cols=17 Identities=18% Similarity=0.053 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11935 123 EKTIVENAAKQLKQISE 139 (1334)
Q Consensus 123 ~~~i~~~~~~~ie~~~~ 139 (1334)
+.-|.+++++.-|+|.+
T Consensus 200 Q~yI~~LEsKVqDLm~E 216 (401)
T PF06785_consen 200 QAYIGKLESKVQDLMYE 216 (401)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 346
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=93.44 E-value=13 Score=45.18 Aligned_cols=7 Identities=0% Similarity=-0.216 Sum_probs=3.3
Q ss_pred ccccCCC
Q psy11935 281 YAPSSNQ 287 (1334)
Q Consensus 281 nIVv~~e 287 (1334)
+||+++.
T Consensus 252 ~ivIDSK 258 (475)
T PRK10361 252 DVVIDAK 258 (475)
T ss_pred CceEecC
Confidence 3555443
No 347
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=93.37 E-value=0.023 Score=74.00 Aligned_cols=61 Identities=18% Similarity=0.097 Sum_probs=0.0
Q ss_pred hhchhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 560 SEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVM 622 (1334)
Q Consensus 560 l~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~ 622 (1334)
+....+++..+ +.++.........+..++..+.++...++.....+..++..+.+.+++++
T Consensus 365 le~~k~qi~eL--e~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~eeL~ 425 (713)
T PF05622_consen 365 LEEYKKQIQEL--EQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRETNEELE 425 (713)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444444 44444333333344444444444444444444444444444444444444
No 348
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=93.37 E-value=0.064 Score=62.82 Aligned_cols=54 Identities=24% Similarity=0.305 Sum_probs=38.2
Q ss_pred ccccccccccccccccccccCCcccCCCCcceeeeeecccCCCCCceEE----EeeCCEEEEecCC
Q psy11935 872 LSELSGNVIDLCPVGALTSKPYSFTARPWETRKTESVDVLDAVGSNIIV----STRTGEVLRVLPR 933 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~k~~~~~~r~we~~~~~s~c~~C~~gC~i~v----~v~~g~v~ri~p~ 933 (1334)
.|+.||-||.-||.+|| ...+-|-++..- |+|=..--++.+ ..+.|+|+.+.|.
T Consensus 51 lCiGCGICvkkCPF~AI-----~IvnLP~eLe~e---~vHRYg~NgFkL~~LP~pr~G~V~GilG~ 108 (591)
T COG1245 51 LCIGCGICVKKCPFDAI-----SIVNLPEELEEE---VVHRYGVNGFKLYRLPTPRPGKVVGILGP 108 (591)
T ss_pred hhccchhhhccCCcceE-----EEecCchhhccc---ceeeccCCceEEecCCCCCCCcEEEEEcC
Confidence 48999999999999999 455667666543 444333334443 3588999998875
No 349
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=93.35 E-value=0.042 Score=55.61 Aligned_cols=76 Identities=20% Similarity=0.378 Sum_probs=54.9
Q ss_pred cEEEEECCEEEE--eCCCCcchh------------------------------hhhhhcCCC--CCCCEEEcCCHHHHH-
Q psy11935 664 KFEVFIDDKKVM--VDPGTTVLQ------------------------------PVAACAMPV--MKGWRVKTNSEMTRR- 708 (1334)
Q Consensus 664 ~~~~~idg~~~~--v~~g~til~------------------------------~~~ac~~~~--~~gm~v~t~s~~~~~- 708 (1334)
+|++||||.+++ |+|++++++ ++.||.+|+ .+|-+|.|=.-...+
T Consensus 3 ~i~ltvNG~~~~~~~~p~~~Ll~~LRd~l~ltgtk~GC~~g~CGACtVlvDG~~v~SCl~~a~~~~G~~ItTiEGl~~~~ 82 (156)
T COG2080 3 PITLTVNGEPVELDVDPRTPLLDVLRDELGLTGTKKGCGHGQCGACTVLVDGEAVNSCLTLAVQAEGAEITTIEGLAKKD 82 (156)
T ss_pred cEEEEECCeEEEEEeCCCChHHHHHHHhcCCCCcCCCCCCccCCceEEEECCeEehHHHHHHHHhCCCeEEEeecccCCC
Confidence 689999999887 669999999 889999988 689999993211111
Q ss_pred -HHHHHHHHHHHhCCCCCCCCCCCCCCchhhh
Q psy11935 709 -AREGVMEFLLVNHPLDCPICDQGGECDLQDQ 739 (1334)
Q Consensus 709 -~r~~~~~~ll~~hp~~C~~c~~~g~c~lq~~ 739 (1334)
...-|.+-++.+|-.-|.+|.-|--|-.-++
T Consensus 83 ~~l~~vQ~Af~e~~~~QCGyCtpG~Imsa~~l 114 (156)
T COG2080 83 GGLHPVQQAFLEHDAFQCGYCTPGQIMSATAL 114 (156)
T ss_pred CCcCHHHHHHHHcCCCcCCCCcHHHHHHHHHH
Confidence 1144556667788888988887655433333
No 350
>COG3862 Uncharacterized protein with conserved CXXC pairs [Function unknown]
Probab=93.27 E-value=0.089 Score=48.50 Aligned_cols=55 Identities=22% Similarity=0.373 Sum_probs=43.6
Q ss_pred eeeecccCCCCCceEEEeeCCEEEEecCCCCCCCCccccccccc-cccccc-cccccCCceEecCCCCe
Q psy11935 905 TESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGR-FAYDGL-KRQRLLTPFVRNCDGQL 971 (1334)
Q Consensus 905 ~~s~c~~C~~gC~i~v~v~~g~v~ri~p~~~~~vn~g~lC~kgr-~~~~~l-~~~Rl~~PliR~~~g~~ 971 (1334)
.+-+|..|..||.|.|++ .+.+|.|+ -|+||. |+.+-+ +|.|+.+-.+|..+|+.
T Consensus 3 ~~~iCi~CP~gC~i~Ve~---~~~~v~Gn---------~CPRG~ey~~~Ei~~pkrvvts~VrV~ng~~ 59 (117)
T COG3862 3 KEVICIVCPIGCHIKVEL---HIKSVKGN---------RCPRGVEYGKEEITSPKRVVTSTVRVKNGEL 59 (117)
T ss_pred eEEEEEEcCCccEEEEEE---EEEEEecC---------cCCchhhhhHhhhcCcceEEEEEEEEcCCcc
Confidence 456899999999999987 67777764 599996 566666 79999999999865543
No 351
>KOG0804|consensus
Probab=93.26 E-value=3.4 Score=48.58 Aligned_cols=100 Identities=19% Similarity=0.103 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 125 TIVENAAKQLKQISENEFKQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHL 204 (1334)
Q Consensus 125 ~i~~~~~~~ie~~~~~~~l~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~~~l~~l~~~ 204 (1334)
++++.+..+...+.+..+++++...++...+ ..+++..+++..+++..+++..+++.-..+.+.+.-...++++++..
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk--~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~ 425 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKK--IVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEER 425 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4455555555555666666666666666666 66666666666666666666666644444444444444444433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 205 LKEESKKRELMAKKVESVMQSQLQQA 230 (1334)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (1334)
.+ ..+...+.++.++ +.+++++
T Consensus 426 ~~---~~~~s~d~~I~dL-qEQlrDl 447 (493)
T KOG0804|consen 426 EK---EALGSKDEKITDL-QEQLRDL 447 (493)
T ss_pred HH---HHHHHHHHHHHHH-HHHHHhH
Confidence 22 2233333444444 4444443
No 352
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=93.22 E-value=0.02 Score=48.02 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=17.2
Q ss_pred ccccccccccccccccccccCCcc
Q psy11935 872 LSELSGNVIDLCPVGALTSKPYSF 895 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~k~~~~ 895 (1334)
.|+.||.|+++||++++.......
T Consensus 1 kCi~Cg~C~~~CP~~~~~~~~~~~ 24 (55)
T PF13187_consen 1 KCIGCGRCVEACPVGVIEFDEDGG 24 (55)
T ss_dssp C--TTTHHHHHSTTT-EEEETTTT
T ss_pred CCCCcchHHHHCCccCeEccCccc
Confidence 378999999999999997665543
No 353
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=93.08 E-value=0.038 Score=62.61 Aligned_cols=20 Identities=10% Similarity=0.159 Sum_probs=17.8
Q ss_pred cccccccccccccccccccc
Q psy11935 872 LSELSGNVIDLCPVGALTSK 891 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~k 891 (1334)
.|+.||.|+.+||.||+...
T Consensus 163 kCiGCg~Cv~ACPygAi~~n 182 (321)
T TIGR03478 163 RCKGYRYCVEACPYKKVYFN 182 (321)
T ss_pred HCcchHHHHHhCCCCCcEec
Confidence 59999999999999999644
No 354
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=93.05 E-value=0.041 Score=60.80 Aligned_cols=45 Identities=13% Similarity=0.084 Sum_probs=27.9
Q ss_pred cccccccc--cccccccccccccCCcccCCCCcceeeee---ecccCCCCCceEE
Q psy11935 871 FLSELSGN--VIDLCPVGALTSKPYSFTARPWETRKTES---VDVLDAVGSNIIV 920 (1334)
Q Consensus 871 ~~~~~cg~--cv~~CpvGAl~~k~~~~~~r~we~~~~~s---~c~~C~~gC~i~v 920 (1334)
..|..|++ |+.+||+|||...... . -...... .|..|...|+..+
T Consensus 92 ~~C~~C~~~~Cv~~CP~gAi~~~~~~--g---~v~id~~~C~~C~~C~~aCP~~A 141 (225)
T TIGR03149 92 KSCQHCDNAPCVAVCPTGASFKDEET--G---IVDVHKDLCVGCQYCIAACPYRV 141 (225)
T ss_pred hhccCCcCcChHhhCCCCcEEEeCCC--C---eEEechhhCCcchHHHHhCCCCC
Confidence 46899997 9999999999543211 0 1112223 3455666887665
No 355
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=93.01 E-value=0.078 Score=57.97 Aligned_cols=19 Identities=26% Similarity=0.674 Sum_probs=15.9
Q ss_pred ccccccccccccccccccc
Q psy11935 869 KLFLSELSGNVIDLCPVGA 887 (1334)
Q Consensus 869 ~~~~~~~cg~cv~~CpvGA 887 (1334)
..+.|..|++|+++||.|-
T Consensus 196 gv~~C~~~~~C~~vCPK~i 214 (234)
T COG0479 196 GVWRCTTCGNCTEVCPKGI 214 (234)
T ss_pred CEecccccccccccCCCCC
Confidence 3567999999999998764
No 356
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=93.00 E-value=0.026 Score=56.82 Aligned_cols=18 Identities=17% Similarity=0.488 Sum_probs=16.4
Q ss_pred cccccccccccccccccc
Q psy11935 872 LSELSGNVIDLCPVGALT 889 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~ 889 (1334)
.|+.||.|+++||++|+.
T Consensus 90 ~C~~Cg~Cv~vCP~~a~~ 107 (133)
T PRK09625 90 HCKGCGVCVEVCPTNPKS 107 (133)
T ss_pred cCcChhHHHHHCCcCceE
Confidence 599999999999999964
No 357
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=92.99 E-value=0.027 Score=57.71 Aligned_cols=58 Identities=14% Similarity=0.275 Sum_probs=40.5
Q ss_pred CCCcccccCCccchhhhhcccCccccccCCCCCceeccccccccccccccccccccccccccccCCcccCCCCc
Q psy11935 828 LDCPICDQGGECDLQDQSMAFGNDLGTTGRGSDMQVGTYVEKLFLSELSGNVIDLCPVGALTSKPYSFTARPWE 901 (1334)
Q Consensus 828 ~~C~~C~~~g~c~~~~~e~~g~~~~~~~~rg~~~~i~~~~~~~~~~~~cg~cv~~CpvGAl~~k~~~~~~r~we 901 (1334)
+-|+.| +.+| .++++-...+..|+.+. -.|..|+.||..|||++|+-.+.....+.|.
T Consensus 118 iGCtkC------iqaC----pvdAivg~~~~mhtv~~------dlCTGC~lCva~CPtdci~m~~~~~~~~~~k 175 (198)
T COG2878 118 IGCTKC------IQAC----PVDAIVGATKAMHTVIA------DLCTGCDLCVAPCPTDCIEMQPVAETPDRWK 175 (198)
T ss_pred cccHHH------HHhC----ChhhhhccchhHHHHHH------HHhcCCCcccCCCCCCceeeeecccchhhcc
Confidence 777776 8887 33454444555554332 1488999999999999999888777666554
No 358
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=92.94 E-value=32 Score=43.15 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=15.3
Q ss_pred HHHHHHhhhhhhhhhHHHHHhccCCCCCCccccccccc
Q psy11935 228 QQAIHMITSDVTHLHTSKESLATRQPSEQSLIDSTTDT 265 (1334)
Q Consensus 228 ~~~~~~~~~~~srl~~Vk~vL~~~~~~~~~gI~G~Vae 265 (1334)
..+.+........++.|...+.+... .|.|++|.
T Consensus 390 ~~lqqq~~~aee~Lk~v~eav~S~q~----~L~s~ma~ 423 (739)
T PF07111_consen 390 RRLQQQTASAEEQLKLVSEAVSSSQQ----WLESQMAK 423 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 33334444444444555555544332 35554443
No 359
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=92.92 E-value=2.7 Score=49.68 Aligned_cols=20 Identities=0% Similarity=-0.207 Sum_probs=11.5
Q ss_pred HHHHhhhcCCCccceechhhhh
Q psy11935 293 TSNINQQYSMFSADSTHMNIVE 314 (1334)
Q Consensus 293 aI~~LK~~~~GRaTFLPl~~Ik 314 (1334)
.+..|+. +|..+=.|-+.|+
T Consensus 76 Il~~lr~--~g~~~df~p~kLk 95 (359)
T PF10498_consen 76 ILDELRK--LGVPVDFPPSKLK 95 (359)
T ss_pred HHHHHHc--cCCCCCCChHHhh
Confidence 3445544 4566666666676
No 360
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=92.91 E-value=0.051 Score=46.31 Aligned_cols=39 Identities=13% Similarity=0.063 Sum_probs=17.5
Q ss_pred ccccccccccccccccccccCCcccCCCCcceeeeeecccCC
Q psy11935 872 LSELSGNVIDLCPVGALTSKPYSFTARPWETRKTESVDVLDA 913 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~k~~~~~~r~we~~~~~s~c~~C~ 913 (1334)
.|+.||.|+.+||.||+..-.+.. .+.....+..|..|+
T Consensus 7 ~Ci~Cg~C~~~Cp~~~~~~i~~~~---~~~~~v~~~~C~GCg 45 (59)
T PF14697_consen 7 KCIGCGKCVRACPDGAIDAIEVDE---GKKVPVNPDKCIGCG 45 (59)
T ss_dssp T----SCCCHHCCCCS-S-ECCTT---TTSSECE-TT--S-S
T ss_pred cccChhhHHhHcCccceeeEEecC---CeeEEeccccCcCcC
Confidence 599999999999987774443322 222234455666554
No 361
>KOG0243|consensus
Probab=92.90 E-value=14 Score=48.67 Aligned_cols=36 Identities=14% Similarity=0.354 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 53 LREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREF 88 (1334)
Q Consensus 53 ~~er~~~~~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 88 (1334)
.++++.....+.+....+|++++.+++.++..+..+
T Consensus 432 see~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~ 467 (1041)
T KOG0243|consen 432 SEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDL 467 (1041)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555444455555555555555555555555444
No 362
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=92.89 E-value=0.95 Score=52.64 Aligned_cols=69 Identities=16% Similarity=0.129 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy11935 168 KLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQAIHMITSD 237 (1334)
Q Consensus 168 ~~~~~~~~~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (1334)
+++.+++.+..++.+++..+..+.++++++....-.....++.++.+..++...+ ..++......+.++
T Consensus 64 ~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl-~~q~~~~~~~L~~L 132 (314)
T PF04111_consen 64 QELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSL-KNQYEYASNQLDRL 132 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444445555555555555555555 55554444444443
No 363
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=92.83 E-value=0.12 Score=45.11 Aligned_cols=20 Identities=10% Similarity=0.254 Sum_probs=18.7
Q ss_pred EEEEECCEEEEeCCCCcchh
Q psy11935 665 FEVFIDDKKVMVDPGTTVLQ 684 (1334)
Q Consensus 665 ~~~~idg~~~~v~~g~til~ 684 (1334)
++|+|||+++++++|.||.+
T Consensus 1 m~i~vNG~~~~~~~~~tl~~ 20 (66)
T PRK05659 1 MNIQLNGEPRELPDGESVAA 20 (66)
T ss_pred CEEEECCeEEEcCCCCCHHH
Confidence 47999999999999999998
No 364
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=92.79 E-value=0.037 Score=66.84 Aligned_cols=58 Identities=29% Similarity=0.445 Sum_probs=32.2
Q ss_pred CCCcccccCCccchhhhhc--ccCccccccCCCCCceec--------cccccccccccccccccccccccc
Q psy11935 828 LDCPICDQGGECDLQDQSM--AFGNDLGTTGRGSDMQVG--------TYVEKLFLSELSGNVIDLCPVGAL 888 (1334)
Q Consensus 828 ~~C~~C~~~g~c~~~~~e~--~g~~~~~~~~rg~~~~i~--------~~~~~~~~~~~cg~cv~~CpvGAl 888 (1334)
..|.+| |.|...|--+ .|.+.++...+|....+. ........|..||+|.++||+|.-
T Consensus 293 ~~CIrC---G~C~~~CPvy~~~g~~~~~~~~~Gp~G~v~~~~~~g~~~~~~~~~~C~~Cg~C~~vCP~gI~ 360 (432)
T TIGR00273 293 LACIRC---GACQNECPVYRHIGGHWYGSIYPGPIGAVWSPLLGGYTDYKHLPYLSSLCGACREVCPVKIP 360 (432)
T ss_pred hhCCCC---CCccccCcchhccCccccccccCChHHHHHHHHhcccccccccCccchhhhhhhccCCCCCc
Confidence 344444 6668888433 233334433333321111 112234579999999999999754
No 365
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=92.79 E-value=0.13 Score=69.59 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=21.4
Q ss_pred CCcEEEEECCEEEEeCCCCcchhh
Q psy11935 662 NEKFEVFIDDKKVMVDPGTTVLQP 685 (1334)
Q Consensus 662 ~~~~~~~idg~~~~v~~g~til~~ 685 (1334)
...|+|++||+++++++|.||.-.
T Consensus 10 ~~~~~~~~dg~~~~~~~g~t~a~a 33 (985)
T TIGR01372 10 SRPLRFTFDGKSYSGFAGDTLASA 33 (985)
T ss_pred CCeEEEEECCEEeecCCCCHHHHH
Confidence 457999999999999999999763
No 366
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=92.73 E-value=33 Score=42.68 Aligned_cols=27 Identities=4% Similarity=-0.197 Sum_probs=21.0
Q ss_pred CcChHHHHHHhhhcCCCccceechhhhh
Q psy11935 287 QQYSIPTSNINQQYSMFSADSTHMNIVE 314 (1334)
Q Consensus 287 e~~Ak~aI~~LK~~~~GRaTFLPl~~Ik 314 (1334)
..+....|.|+-..+-|- .|.||.-|=
T Consensus 406 t~~G~d~VeF~istNpG~-~~~PL~KvA 432 (557)
T COG0497 406 TADGADKVEFLISTNPGE-PLKPLAKVA 432 (557)
T ss_pred CcCCcceEEEEEeCCCCC-CCccHHhhc
Confidence 466778888998888884 688888776
No 367
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=92.70 E-value=0.066 Score=57.19 Aligned_cols=83 Identities=13% Similarity=0.099 Sum_probs=48.4
Q ss_pred CCCcccccceeec-CCCcccccccccCCCCcEEEcCCHHHHHHHHHHHHHHhhCCCCCCcccccCCccchhhhhcccCcc
Q psy11935 773 LIPSRVFLQSINR-HWIGPVAACAMPVMKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGND 851 (1334)
Q Consensus 773 ~ip~lc~~~~v~~-~~~~~~~aC~~~v~~gm~i~t~s~~~r~~r~~~~~~ll~~h~~~C~~C~~~g~c~~~~~e~~g~~~ 851 (1334)
++|..|.|+.-.- -...|+.|+.-.-++|.++.- ..+| |=|..| +-.| -.|..-
T Consensus 64 ~~~~~C~HC~~ppCv~vCPtgA~~k~~~dGiV~vd---~d~C--------------IGC~yC------i~AC--Pyga~~ 118 (203)
T COG0437 64 YLSISCMHCEDPPCVKVCPTGALFKREEDGIVLVD---KDLC--------------IGCGYC------IAAC--PYGAPQ 118 (203)
T ss_pred EecccccCCCCCcccccCCCcceEEecCCCEEEec---CCcc--------------cCchHH------HhhC--CCCCce
Confidence 4888888872110 111344444444467877764 6677 777777 6666 223332
Q ss_pred ccccCCCCCceeccccccccccccc------c---cccccccccccccc
Q psy11935 852 LGTTGRGSDMQVGTYVEKLFLSELS------G---NVIDLCPVGALTSK 891 (1334)
Q Consensus 852 ~~~~~rg~~~~i~~~~~~~~~~~~c------g---~cv~~CpvGAl~~k 891 (1334)
+.. .....-.|.|| | .||+.||+|||.-.
T Consensus 119 ~~~-----------~~~~~~KCt~C~~ri~~g~~PaCV~~CP~~A~~fG 156 (203)
T COG0437 119 FNP-----------DKGVVDKCTFCVDRVAVGKLPACVEACPTGALIFG 156 (203)
T ss_pred eCc-----------ccCcccccCcchhhHhcCCCCcccccCCccccccc
Confidence 222 11113468888 8 79999999999433
No 368
>KOG1899|consensus
Probab=92.63 E-value=23 Score=43.38 Aligned_cols=60 Identities=10% Similarity=-0.000 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhhHHHHHHHH
Q psy11935 13 KSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQ 72 (1334)
Q Consensus 13 ~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~~~er~~~~~~~~~~l~~~i~ 72 (1334)
.++.++..+...-+.|.-|+.-|-+++..--++|-.++.-+.++.+++...-+-|++++-
T Consensus 108 ~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqell 167 (861)
T KOG1899|consen 108 EYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELL 167 (861)
T ss_pred HHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHH
Confidence 345555555555555555666666666666666666655566666655555555555443
No 369
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=92.62 E-value=0.077 Score=61.59 Aligned_cols=10 Identities=40% Similarity=1.248 Sum_probs=6.5
Q ss_pred cccccccccc
Q psy11935 879 VIDLCPVGAL 888 (1334)
Q Consensus 879 cv~~CpvGAl 888 (1334)
|+.+||+|||
T Consensus 193 Cv~aCP~gAi 202 (328)
T PRK10882 193 CVEVCPTGAV 202 (328)
T ss_pred hhhhccccce
Confidence 6666666666
No 370
>PRK07118 ferredoxin; Validated
Probab=92.61 E-value=0.049 Score=62.11 Aligned_cols=60 Identities=20% Similarity=0.257 Sum_probs=38.0
Q ss_pred hCCCCCCc-ccccCCccchhhhhcccCccccccCCCCCceeccccccccccccccccccccccccccccCCc
Q psy11935 824 VNHPLDCP-ICDQGGECDLQDQSMAFGNDLGTTGRGSDMQVGTYVEKLFLSELSGNVIDLCPVGALTSKPYS 894 (1334)
Q Consensus 824 ~~h~~~C~-~C~~~g~c~~~~~e~~g~~~~~~~~rg~~~~i~~~~~~~~~~~~cg~cv~~CpvGAl~~k~~~ 894 (1334)
...+..|. .|..+|.|+..|- .+++.+.+ +. ..+ .+-.|+.||.|+.+||++||+..+..
T Consensus 131 ~~g~~~c~~~CigCg~C~~aCp----~~AI~~~~-g~-~~i-----d~~~C~~Cg~Cv~aCP~~ai~~~~~~ 191 (280)
T PRK07118 131 FGGPKGCSYGCLGLGSCVAACP----FDAIHIEN-GL-PVV-----DEDKCTGCGACVKACPRNVIELIPKS 191 (280)
T ss_pred ccCcccCCCCCcChhHHHHhCC----ccCeEccC-Ce-EEE-----ChhhCcChhHHHHhcCccceeeeccc
Confidence 44555554 2555588899883 23444332 11 112 12369999999999999999877643
No 371
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=92.57 E-value=3.8 Score=44.10 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 22 REFYQTQLNNNQKAQDEIQTLLAKS 46 (1334)
Q Consensus 22 ~~~l~~l~~~~~~lq~~i~~l~~~i 46 (1334)
+..+..+.++++.+++.+..+...+
T Consensus 87 ~~~l~~l~~el~~l~~~~~~~~~~l 111 (191)
T PF04156_consen 87 QQQLQQLQEELDQLQERIQELESEL 111 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 372
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=92.55 E-value=1.8 Score=45.29 Aligned_cols=122 Identities=18% Similarity=0.082 Sum_probs=70.2
Q ss_pred cCHHHHHHHHHHHhccCCEEEEeCCcC-C-HHHHHHHHHHHHHhCCCccccCCCCCc---c-----hhhhhhhhhccCCC
Q psy11935 974 TEWEDALIAVAQKLQTSEVAGVVGSLA-D-AEAMVALKDLLNKLGSEDLYTEYAFPL---E-----GAGTDLRANYLLNN 1043 (1334)
Q Consensus 974 iSWdeAl~~ia~~L~~~~i~~~~g~~~-~-~e~~~~~~~l~~~lGs~~~~~~~~~~~---~-----~~~~~~~~~~~~~~ 1043 (1334)
++-+.|.+.+.+. .+..+++|+.+ + .+....+.+|++++|.+.+.+..++.. . ..+.+.-..++...
T Consensus 22 ~~p~~aa~lI~~A---KrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~~~~~~~~kgv~~~~~~lg~lg~~~~~p 98 (171)
T PRK00945 22 VSPKIAAMMIKKA---KRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGGSYKGLIDKGVDAKYINLHELTNYLKDP 98 (171)
T ss_pred cCHHHHHHHHHhC---CCcEEEECcCccccchHHHHHHHHHHHHCCCEEEccccccccccCCccCCcccHHHHHhhccCc
Confidence 4555554444322 55556666544 3 455667888999988886655431110 0 11111122234455
Q ss_pred Ccccc---cccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCCCCccccccCCCc
Q psy11935 1044 KIAGA---EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGES 1102 (1334)
Q Consensus 1044 ~~~di---e~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~~~t~~~a~~Gtd 1102 (1334)
.+..+ .++|+||++|++. |..+.-++--+.....|.|.|++.+...+.+..|..+
T Consensus 99 ~~e~~~g~~~~DlvlfvG~~~----~~~~~~l~~lk~f~~~~~~~~~~~y~~~a~~s~~~~~ 156 (171)
T PRK00945 99 NWKGLDGNGNYDLVIFIGVTY----YYASQGLSALKHFSPLKTITIDRYYHPNADMSFPNLS 156 (171)
T ss_pred hhhhhcCCCCcCEEEEecCCc----hhHHHHHHHHhhcCCceEEEecCCcCCCCceecCCCC
Confidence 66667 7999999999997 4433333322212348999999888766666555544
No 373
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=92.53 E-value=23 Score=43.68 Aligned_cols=13 Identities=8% Similarity=0.207 Sum_probs=8.6
Q ss_pred ccccccccccccc
Q psy11935 263 TDTNCPVTQQYVP 275 (1334)
Q Consensus 263 Vaeli~Vp~~Y~~ 275 (1334)
+.=.+..|+.|+.
T Consensus 29 ~~~~~~~~p~Y~a 41 (444)
T TIGR03017 29 AVVSLLLPKEYTA 41 (444)
T ss_pred HHHHHhCCceeEE
Confidence 3334567888887
No 374
>KOG2129|consensus
Probab=92.51 E-value=24 Score=41.06 Aligned_cols=41 Identities=15% Similarity=-0.009 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 182 AENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESV 222 (1334)
Q Consensus 182 ~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 222 (1334)
++.....++...++++|..--...+.+-+.+.+.++.++..
T Consensus 285 ~Ee~~~reen~rlQrkL~~e~erRealcr~lsEsesslemd 325 (552)
T KOG2129|consen 285 AEEVDHREENERLQRKLINELERREALCRMLSESESSLEMD 325 (552)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 33333333334444444444444444555555555555444
No 375
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=92.50 E-value=4.7 Score=43.38 Aligned_cols=66 Identities=15% Similarity=0.153 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh---HHHHHHHHHhhhHHHHHHHHHHH
Q psy11935 10 LLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE---LREFYQTQLNNNQKAQDEIQTLL 75 (1334)
Q Consensus 10 ~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~---~~er~~~~~~~~~~l~~~i~~l~ 75 (1334)
++...+..+..+..++..++.....+..++..+........+. .++++..+......+.+++.++.
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444433322 33444444444444444433333
No 376
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.48 E-value=1.2 Score=48.13 Aligned_cols=15 Identities=27% Similarity=0.284 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy11935 174 KAKCEVYEAENKKLK 188 (1334)
Q Consensus 174 ~~~l~~l~~~l~~~~ 188 (1334)
..++..++.++..+.
T Consensus 122 ~~~~~~L~~~~~~l~ 136 (194)
T PF08614_consen 122 EAELAQLEEKIKDLE 136 (194)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 377
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=92.47 E-value=0.11 Score=68.77 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=18.4
Q ss_pred ccccccccccccccccccccC
Q psy11935 872 LSELSGNVIDLCPVGALTSKP 892 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~k~ 892 (1334)
.|+.||.|+.+||+||+..+.
T Consensus 922 ~C~~CG~C~~vCP~~a~~~~g 942 (1012)
T TIGR03315 922 MCNECGNCATFCPYDGAPYKD 942 (1012)
T ss_pred cccccchHHHhCCCCccccee
Confidence 599999999999999995554
No 378
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=92.37 E-value=0.038 Score=55.32 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=20.0
Q ss_pred ccccccccccccccccccccccCC
Q psy11935 870 LFLSELSGNVIDLCPVGALTSKPY 893 (1334)
Q Consensus 870 ~~~~~~cg~cv~~CpvGAl~~k~~ 893 (1334)
+..|+.||.|+.+||+|||.-..+
T Consensus 44 ~~~C~~Cg~Cv~~CP~~AI~~~~~ 67 (132)
T TIGR02060 44 PDMCWECYSCVKACPQGAIDVRGY 67 (132)
T ss_pred chhCccHHHHHHhCCcCceEEECc
Confidence 346999999999999999976543
No 379
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=92.25 E-value=0.076 Score=60.26 Aligned_cols=76 Identities=14% Similarity=0.037 Sum_probs=45.6
Q ss_pred CCcccccceeecCCCcccccccccC-----CCCcEEEcCCHHHHHHHHHHHHHHhhCCCCCCcccccCCccchhhhhccc
Q psy11935 774 IPSRVFLQSINRHWIGPVAACAMPV-----MKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAF 848 (1334)
Q Consensus 774 ip~lc~~~~v~~~~~~~~~aC~~~v-----~~gm~i~t~s~~~r~~r~~~~~~ll~~h~~~C~~C~~~g~c~~~~~e~~g 848 (1334)
+|..|.||.- ...+.+|-+-+ .+|. |.. +..+| +.|..| +..|-.
T Consensus 127 ~p~~C~hC~n----P~Cv~aCPtgAI~k~eedGi-V~I--D~ekC--------------iGCg~C------v~ACPy--- 176 (321)
T TIGR03478 127 LPRICNHCTN----PACLAACPTGAIYKREEDGI-VLV--DQERC--------------KGYRYC------VEACPY--- 176 (321)
T ss_pred ecccCCCCCC----ccchhhCCcCcEEEecCCCe-EEE--CHHHC--------------cchHHH------HHhCCC---
Confidence 7888888631 12344554322 2344 333 56777 777776 888832
Q ss_pred CccccccCCCCCceeccccccccccccc---------ccccccccccccc
Q psy11935 849 GNDLGTTGRGSDMQVGTYVEKLFLSELS---------GNVIDLCPVGALT 889 (1334)
Q Consensus 849 ~~~~~~~~rg~~~~i~~~~~~~~~~~~c---------g~cv~~CpvGAl~ 889 (1334)
.++.+.. .......|++| +.|+.+||++|+.
T Consensus 177 -gAi~~n~---------~~~~~eKC~~C~~Rie~G~~PaCv~aCP~~A~~ 216 (321)
T TIGR03478 177 -KKVYFNP---------QSQKSEKCIGCYPRIEKGIAPACVKQCPGRIRF 216 (321)
T ss_pred -CCcEecC---------CCCchhhCCCchhhhccCCCCHHHhhcCcccEE
Confidence 2222221 11234479999 8999999999994
No 380
>PRK09898 hypothetical protein; Provisional
Probab=92.22 E-value=0.058 Score=59.00 Aligned_cols=20 Identities=35% Similarity=0.592 Sum_probs=14.6
Q ss_pred cccccccccccccccccccc
Q psy11935 871 FLSELSGNVIDLCPVGALTS 890 (1334)
Q Consensus 871 ~~~~~cg~cv~~CpvGAl~~ 890 (1334)
..|++||.|+++||+|||+-
T Consensus 181 ~kC~~Cg~Cv~~CP~~Ai~~ 200 (208)
T PRK09898 181 SKCVLCGECANACPTGALKI 200 (208)
T ss_pred CcCcChHHHHHhCCcccEEE
Confidence 35777888888888887743
No 381
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=92.10 E-value=0.098 Score=53.02 Aligned_cols=69 Identities=14% Similarity=0.271 Sum_probs=47.8
Q ss_pred cEEEEECCEEEE--eCCCCcchh------------------------------hhhhhcCCC--CCCCEEEcCCHHHHH-
Q psy11935 664 KFEVFIDDKKVM--VDPGTTVLQ------------------------------PVAACAMPV--MKGWRVKTNSEMTRR- 708 (1334)
Q Consensus 664 ~~~~~idg~~~~--v~~g~til~------------------------------~~~ac~~~~--~~gm~v~t~s~~~~~- 708 (1334)
.++++|||++++ +++++++|+ ++.||.+|+ .+|..|.|=-.....
T Consensus 1 ~i~~~vNG~~~~~~~~~~~~Ll~~LR~~lgltg~K~gC~~G~CGACtVlvdg~~v~SCl~~~~~~~G~~V~TiEgl~~~~ 80 (148)
T TIGR03193 1 LLRLTVNGRWREDAVADNMLLVDYLRDTVGLTGTKQGCDGGECGACTVLVDGRPRLACSTLAHRVAGRKVETVEGLATNG 80 (148)
T ss_pred CEEEEECCEEEEeecCCCCcHHHHHHHhcCCCCCCCCCCCCCCCCCEEEECCeEeeccHhhHhhcCCCcEEEeCCCCCCC
Confidence 378999999887 569999999 889999988 689999982111100
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCC
Q psy11935 709 AREGVMEFLLVNHPLDCPICDQGG 732 (1334)
Q Consensus 709 ~r~~~~~~ll~~hp~~C~~c~~~g 732 (1334)
.-..+-+-+...|-.-|..|.-|-
T Consensus 81 ~l~pvq~af~~~~a~QCGfCtPG~ 104 (148)
T TIGR03193 81 RLSRLQQAFHERLGTQCGFCTPGM 104 (148)
T ss_pred CCCHHHHHHHHcCCCcCCCCCccH
Confidence 012244445577888887776543
No 382
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=92.02 E-value=0.054 Score=49.13 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=17.0
Q ss_pred ccccccccccccccccccc
Q psy11935 872 LSELSGNVIDLCPVGALTS 890 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~ 890 (1334)
.|..||.|+++||++||+-
T Consensus 56 ~C~~C~~C~~~CP~~Ai~~ 74 (78)
T TIGR02179 56 YCKGCGICANVCPVKAIEM 74 (78)
T ss_pred cCcCccchhhhCCccccEe
Confidence 5899999999999999943
No 383
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=91.97 E-value=44 Score=42.42 Aligned_cols=44 Identities=5% Similarity=0.014 Sum_probs=26.2
Q ss_pred HHHHHHhHhhh-----HHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHH
Q psy11935 42 LLAKSASIKTE-----LREFYQTQLNNNQKAQ-DEIQTLLAKSASIKTEL 85 (1334)
Q Consensus 42 l~~~ie~l~~~-----~~er~~~~~~~~~~l~-~~i~~l~~~~~~~~~~l 85 (1334)
+..++.+.++- ..+......+..+.+. ..+.++++.+..+++..
T Consensus 42 v~~el~kvk~l~l~Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~ 91 (560)
T PF06160_consen 42 VADELSKVKKLNLTGQTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYA 91 (560)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44444444443 6677777777776666 55666666655555544
No 384
>PRK10194 ferredoxin-type protein; Provisional
Probab=91.96 E-value=0.09 Score=55.15 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=17.6
Q ss_pred ccccccccccccccccccccC
Q psy11935 872 LSELSGNVIDLCPVGALTSKP 892 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~k~ 892 (1334)
.++.|+.|+++||+|||...+
T Consensus 105 ~~~~C~~C~~~CP~~Ai~~~~ 125 (163)
T PRK10194 105 QSVECRRCQDSCEPMAIIFRP 125 (163)
T ss_pred cCCCcCcchhhCCHhHeEeee
Confidence 357999999999999996653
No 385
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=91.90 E-value=35 Score=41.21 Aligned_cols=11 Identities=0% Similarity=-0.321 Sum_probs=6.0
Q ss_pred hHHHHhhhhch
Q psy11935 342 MNIVERDIPNS 352 (1334)
Q Consensus 342 ~~Ii~~LLG~t 352 (1334)
...+..+.|++
T Consensus 42 ~~A~~kF~~~~ 52 (388)
T PF04912_consen 42 DEARSKFKGAR 52 (388)
T ss_pred HHHHHHhCcCc
Confidence 33555566665
No 386
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.85 E-value=11 Score=43.46 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 18 KTELREFYQTQLNNNQKAQDEIQTLLA 44 (1334)
Q Consensus 18 ~~~~~~~l~~l~~~~~~lq~~i~~l~~ 44 (1334)
+..++..+..+....+.++.++.++.+
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555433
No 387
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=91.79 E-value=0.04 Score=45.63 Aligned_cols=15 Identities=20% Similarity=0.394 Sum_probs=10.2
Q ss_pred ccccccccccccccc
Q psy11935 870 LFLSELSGNVIDLCP 884 (1334)
Q Consensus 870 ~~~~~~cg~cv~~Cp 884 (1334)
+..|+.||.|+++||
T Consensus 38 ~~~C~~Cg~C~~~CP 52 (52)
T PF13237_consen 38 PERCIGCGACVEVCP 52 (52)
T ss_dssp TTT--TTSHHHHH-T
T ss_pred cccccccChhhhhCc
Confidence 446999999999998
No 388
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=91.70 E-value=0.1 Score=55.82 Aligned_cols=66 Identities=23% Similarity=0.212 Sum_probs=40.2
Q ss_pred CCCcccccCCccchhhhhcccCccccccCCCCCceeccccccccccccccccccccccccccccCCcccCCCCcceeeee
Q psy11935 828 LDCPICDQGGECDLQDQSMAFGNDLGTTGRGSDMQVGTYVEKLFLSELSGNVIDLCPVGALTSKPYSFTARPWETRKTES 907 (1334)
Q Consensus 828 ~~C~~C~~~g~c~~~~~e~~g~~~~~~~~rg~~~~i~~~~~~~~~~~~cg~cv~~CpvGAl~~k~~~~~~r~we~~~~~s 907 (1334)
+.|..| .+..|+..| .+.++ ..|..+..|.... -.|+.||.|+.+||.||..-.+ .+.+..
T Consensus 67 ~~C~HC-~~ppCv~vC----PtgA~--~k~~~dGiV~vd~---d~CIGC~yCi~ACPyga~~~~~---------~~~~~~ 127 (203)
T COG0437 67 ISCMHC-EDPPCVKVC----PTGAL--FKREEDGIVLVDK---DLCIGCGYCIAACPYGAPQFNP---------DKGVVD 127 (203)
T ss_pred ccccCC-CCCcccccC----CCcce--EEecCCCEEEecC---CcccCchHHHhhCCCCCceeCc---------ccCccc
Confidence 678888 456688887 22221 1122222333222 2699999999999999983332 234466
Q ss_pred ecccC
Q psy11935 908 VDVLD 912 (1334)
Q Consensus 908 ~c~~C 912 (1334)
-|.||
T Consensus 128 KCt~C 132 (203)
T COG0437 128 KCTFC 132 (203)
T ss_pred ccCcc
Confidence 78888
No 389
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=91.66 E-value=0.091 Score=50.50 Aligned_cols=21 Identities=19% Similarity=0.476 Sum_probs=18.3
Q ss_pred ccccccccccccccccccccC
Q psy11935 872 LSELSGNVIDLCPVGALTSKP 892 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~k~ 892 (1334)
.|+.||.|+++||+||+....
T Consensus 17 ~Ci~C~~Cv~aCP~~ai~~~~ 37 (103)
T PRK09626 17 RCKACDICVSVCPAGVLAMRI 37 (103)
T ss_pred cccCCcchhhhcChhhhcccc
Confidence 699999999999999996543
No 390
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.63 E-value=6.2 Score=38.89 Aligned_cols=70 Identities=16% Similarity=0.274 Sum_probs=34.5
Q ss_pred HHHHHHHhHhhh---HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 41 TLLAKSASIKTE---LREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQLDSAELTLH 116 (1334)
Q Consensus 41 ~l~~~ie~l~~~---~~er~~~~~~~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 116 (1334)
++.+.|-+++++ +++++..+...++.+.++|-.+-.+.+.+..... .+.. ++.++.+++.+.+.+-+-++
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~-----~~~~-L~~el~~l~~ry~t~LellG 92 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKK-----EVEE-LEQELEELQQRYQTLLELLG 92 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH-HHHHHHHHHHHHHHHHHHhc
Confidence 344444444444 5555555555666666666655555444433322 2234 44455555555544444443
No 391
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=91.62 E-value=11 Score=42.29 Aligned_cols=101 Identities=13% Similarity=0.183 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh---HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 12 AKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE---LREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREF 88 (1334)
Q Consensus 12 ~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~---~~er~~~~~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 88 (1334)
..++.++.+++.+.......+...++.+..|..+....+.. +..+...+...+++|+.+......+...+..++..+
T Consensus 8 ~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~ 87 (246)
T PF00769_consen 8 QELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREA 87 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443333333333 444444445555555555554555444555555444
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy11935 89 YQTQLNNNVKEKLKEFQTQLDSAELT 114 (1334)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~~~~~~ 114 (1334)
...+.. +.........+...+...
T Consensus 88 -~~~i~~-l~ee~~~ke~Ea~~lq~e 111 (246)
T PF00769_consen 88 -EAEIAR-LEEESERKEEEAEELQEE 111 (246)
T ss_dssp -HHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 444443 444333333333334333
No 392
>PRK07118 ferredoxin; Validated
Probab=91.61 E-value=0.062 Score=61.30 Aligned_cols=32 Identities=13% Similarity=0.187 Sum_probs=22.5
Q ss_pred ccccccccccccccccccccCCcccCCCCcce
Q psy11935 872 LSELSGNVIDLCPVGALTSKPYSFTARPWETR 903 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~k~~~~~~r~we~~ 903 (1334)
.|..||.|+++||++||.........+.|+..
T Consensus 243 ~C~~Cg~C~~~CP~~AI~~~~~~~~~~~~~~~ 274 (280)
T PRK07118 243 KCTSCGKCVEKCPTKAIRILNKPPKVKEPKKA 274 (280)
T ss_pred cCCCHHHHHHhCCccccEeecccccccccCCc
Confidence 57777888888888888776666666666543
No 393
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=91.56 E-value=0.63 Score=52.99 Aligned_cols=119 Identities=20% Similarity=0.152 Sum_probs=69.2
Q ss_pred HHhcHHHHHHHHhcCCCcEEEEcCCc-ccHHHHHHHHHHHHHhhcCCCCCCCCCcccccchhhhhhhhhhhcCCCcchhh
Q psy11935 1109 LASGSHPFSKKLSAAKKPLIVVGADI-SDGAAVLALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAALDIGYKPGTSA 1187 (1334)
Q Consensus 1109 l~~g~~~~A~~l~~a~~~~ii~G~~~-~~g~~~~~al~~l~~~~g~~Gg~~~~~~~~~~l~~~~n~~G~~~~g~~pg~~~ 1187 (1334)
+.+.+++.|+.|..||+|++. |++. ... +...-..|+..+|.. ..+-..+ -+ .....|..+.|.......
T Consensus 65 ~deAie~Aa~ILv~aKrPlly-g~s~tscE--A~~~gielaE~~gav---iD~~asv--ch-Gp~~~alqe~g~p~~Tlg 135 (429)
T COG1029 65 YDEAIEKAAEILVNAKRPLLY-GWSSTSCE--AQELGIELAEKLGAV---IDSNASV--CH-GPSVLALQEAGKPTATLG 135 (429)
T ss_pred HHHHHHHHHHHHHhccCceEe-ccccchHH--HHHHHHHHHHHhCcE---ecCCCcc--cc-chHHHHHHhcCCcccchh
Confidence 345578899999999999865 4444 222 223334566665432 1110111 11 123345555554332212
Q ss_pred HhcCCCcEEEEECCChhhh-----HH-hhc---------CCCceEEEEcCCCChhhccccEEec
Q psy11935 1188 IREKPPKVLFLLGADEGSI-----SR-DDV---------GKDCFIIYQGHHGDHGASIADAILP 1236 (1334)
Q Consensus 1188 i~~g~ik~l~~~g~np~~~-----~~-~al---------~k~~fvV~~d~~~~eta~~ADvVLP 1236 (1334)
-...+.++++.||.||... .+ ..+ ...-.+|+.|+..|.||..||+.+-
T Consensus 136 evKNraDviVyWGtNP~~shPRhmSRYs~f~RG~~~~rGr~dRtvIvVD~RkT~TAklad~~~q 199 (429)
T COG1029 136 EVKNRADVIVYWGTNPMHSHPRHMSRYSVFPRGFFRPRGREDRTVIVVDPRKTATAKLADNHVQ 199 (429)
T ss_pred hhcccccEEEEeCCCcccccchhhhhcccccccccccCCcccceEEEEecCcCchhhhhhheEe
Confidence 2234678999999999542 11 111 2355799999999999999998764
No 394
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=91.53 E-value=0.17 Score=51.93 Aligned_cols=72 Identities=17% Similarity=0.300 Sum_probs=50.1
Q ss_pred CCcEEEEECCEEEEeC--CCCcchh-----------------------------hhhhhcCCC--CCCCEEEcCCHHHH-
Q psy11935 662 NEKFEVFIDDKKVMVD--PGTTVLQ-----------------------------PVAACAMPV--MKGWRVKTNSEMTR- 707 (1334)
Q Consensus 662 ~~~~~~~idg~~~~v~--~g~til~-----------------------------~~~ac~~~~--~~gm~v~t~s~~~~- 707 (1334)
..+|+++|||++++|+ +++++|+ ++.||.+|+ .+|-.|.|=--...
T Consensus 6 ~~~i~~~vNG~~~~~~~~~~~~Ll~~LR~~gltgtK~GC~~G~CGACtVlvdg~~v~SCl~~a~~~~G~~V~TiEGl~~~ 85 (159)
T PRK09908 6 TITIECTINGMPFQLHAAPGTPLSELLREQGLLSVKQGCCVGECGACTVLVDGTAIDSCLYLAAWAEGKEIRTLEGEAKG 85 (159)
T ss_pred ceeEEEEECCEEEEEecCCCCcHHHHHHHcCCCCCCCCcCCCCCCCcEEEECCcEeehhHhhHHHhCCCEEEeecCCCCC
Confidence 3458999999987655 9999999 889999988 68999998211000
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCCCC
Q psy11935 708 RAREGVMEFLLVNHPLDCPICDQGGE 733 (1334)
Q Consensus 708 ~~r~~~~~~ll~~hp~~C~~c~~~g~ 733 (1334)
..-..|-+-++.+|-.-|..|.-|--
T Consensus 86 ~~l~pvQ~Af~~~~a~QCGyCtPG~i 111 (159)
T PRK09908 86 GKLSHVQQAYAKSGAVQCGFCTPGLI 111 (159)
T ss_pred CCCCHHHHHHHHcCCCcCCCCCccHH
Confidence 01123555566778888877765543
No 395
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=91.53 E-value=27 Score=39.09 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 173 FKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQA 230 (1334)
Q Consensus 173 ~~~~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (1334)
+++++.-+..++..+..++.....+.+-...++.-+..++..++..+..+ ++.++..
T Consensus 155 l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~L-q~~ln~~ 211 (240)
T PF12795_consen 155 LQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQAL-QNLLNQK 211 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 34444444444444444444444444444444444444444445555555 4444433
No 396
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=91.53 E-value=0.041 Score=52.09 Aligned_cols=12 Identities=42% Similarity=0.966 Sum_probs=6.3
Q ss_pred cccccccccccc
Q psy11935 877 GNVIDLCPVGAL 888 (1334)
Q Consensus 877 g~cv~~CpvGAl 888 (1334)
..||.+||+|||
T Consensus 82 PaCv~~Cp~~Al 93 (98)
T PF13247_consen 82 PACVEACPTGAL 93 (98)
T ss_dssp -HHHHH-TTS-E
T ss_pred ChhHHhccccce
Confidence 557777777777
No 397
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=91.52 E-value=0.11 Score=53.14 Aligned_cols=70 Identities=19% Similarity=0.326 Sum_probs=48.8
Q ss_pred CcEEEEECCEEEEeC--CCCcchh------------------------------hhhhhcCCC--CCCCEEEcCCHHHHH
Q psy11935 663 EKFEVFIDDKKVMVD--PGTTVLQ------------------------------PVAACAMPV--MKGWRVKTNSEMTRR 708 (1334)
Q Consensus 663 ~~~~~~idg~~~~v~--~g~til~------------------------------~~~ac~~~~--~~gm~v~t~s~~~~~ 708 (1334)
+.|+|+|||++++++ +++++++ ++.||.+|+ .+|..|.|=--....
T Consensus 2 ~~i~f~vNG~~~~~~~~~~~~Ll~~LR~~~~ltgtK~gC~~G~CGACtVlvdG~~v~SCl~~~~~~~G~~v~TiEgl~~~ 81 (151)
T TIGR03198 2 EQFRFTVNGQAWEVAAVPTTRLSDLLRKELQLTGTKVSCGIGRCGACSVLIDGKLANACLTMAYQADGHEITTIEGIAEN 81 (151)
T ss_pred ccEEEEECCEEEEeecCCCcHHHHHHHhccCCCCCCCCCCCCcCCccEEEECCcEEechHHHHHHhcCCEEEecCCcCCC
Confidence 358999999999766 7888888 788999988 789999992111111
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCC
Q psy11935 709 AREGVMEFLLVNHPLDCPICDQGG 732 (1334)
Q Consensus 709 ~r~~~~~~ll~~hp~~C~~c~~~g 732 (1334)
.-..|-+-+..+|-.-|..|.-|-
T Consensus 82 ~l~pvQ~af~~~~a~QCGfCtpG~ 105 (151)
T TIGR03198 82 ELDPCQTAFLEEGGFQCGYCTPGM 105 (151)
T ss_pred CCCHHHHHHHHcCCCcCCCCCccH
Confidence 112245555677888887776543
No 398
>KOG0804|consensus
Probab=91.45 E-value=8.7 Score=45.29 Aligned_cols=42 Identities=10% Similarity=0.119 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 97 VKEKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQIS 138 (1334)
Q Consensus 97 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~i~~~~~~~ie~~~ 138 (1334)
+.+.+.-...++.+.++...+.....+++|.++++++-++|-
T Consensus 408 l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf 449 (493)
T KOG0804|consen 408 LIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMF 449 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhe
Confidence 333444444445555555444444555555555555555544
No 399
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=91.45 E-value=0.083 Score=47.95 Aligned_cols=18 Identities=28% Similarity=0.565 Sum_probs=16.3
Q ss_pred cccccccccccccccccc
Q psy11935 872 LSELSGNVIDLCPVGALT 889 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~ 889 (1334)
.|-.||-|+.+||+.||.
T Consensus 67 yCKGCGICa~vCP~kaI~ 84 (91)
T COG1144 67 YCKGCGICANVCPVKAIE 84 (91)
T ss_pred cccCceechhhCChhheE
Confidence 488999999999999984
No 400
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.43 E-value=13 Score=42.88 Aligned_cols=11 Identities=27% Similarity=0.486 Sum_probs=6.1
Q ss_pred HhhCCCCCceE
Q psy11935 363 LLEKPPGNPVS 373 (1334)
Q Consensus 363 ak~~~~r~RIV 373 (1334)
+-..+-+|+|+
T Consensus 214 yL~v~Lpy~i~ 224 (302)
T PF10186_consen 214 YLGVPLPYPIT 224 (302)
T ss_pred HhCCCCCCCcc
Confidence 33445566666
No 401
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=91.42 E-value=5 Score=47.43 Aligned_cols=95 Identities=13% Similarity=0.140 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 11 LAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQ 90 (1334)
Q Consensus 11 ~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~~~er~~~~~~~~~~l~~~i~~l~~~~~~~~~~l~~~~~ 90 (1334)
+.+...-...+...+.....++++++.++....++|+ .|-++++++.+.+-++....+.++..++++.... .
T Consensus 222 leqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~-------sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~-s 293 (359)
T PF10498_consen 222 LEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIE-------SREKYINNQLEPLIQEYRSAQDELSEVQEKYKQA-S 293 (359)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-h
Confidence 3333344444444444444444444444444444443 3333444455555555555555555555555444 4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Q psy11935 91 TQLNNNVKEKLKEFQTQLDSAELT 114 (1334)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~~~~~~ 114 (1334)
..+.+ +...+.++..+|++.+.+
T Consensus 294 ~~V~~-~t~~L~~IseeLe~vK~e 316 (359)
T PF10498_consen 294 EGVSE-RTRELAEISEELEQVKQE 316 (359)
T ss_pred hHHHH-HHHHHHHHHHHHHHHHHH
Confidence 44444 444555555555444444
No 402
>KOG0982|consensus
Probab=91.26 E-value=36 Score=40.02 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=8.6
Q ss_pred cchhhhhHHHHHHHHHHHHHH
Q psy11935 162 EKPGATKLMLDFKAKCEVYEA 182 (1334)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~l~~ 182 (1334)
+++..++-+.++..+++.++.
T Consensus 368 ekeatqELieelrkelehlr~ 388 (502)
T KOG0982|consen 368 EKEATQELIEELRKELEHLRR 388 (502)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 403
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=91.23 E-value=19 Score=45.50 Aligned_cols=13 Identities=8% Similarity=-0.230 Sum_probs=7.9
Q ss_pred CCccceechhhhh
Q psy11935 302 MFSADSTHMNIVE 314 (1334)
Q Consensus 302 ~GRaTFLPl~~Ik 314 (1334)
..|...+|-..+=
T Consensus 699 s~R~sp~pq~~~A 711 (861)
T PF15254_consen 699 SERLSPQPQISVA 711 (861)
T ss_pred ccccCCccccccc
Confidence 4566666666664
No 404
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=91.21 E-value=27 Score=38.51 Aligned_cols=46 Identities=7% Similarity=0.199 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy11935 7 IQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE 52 (1334)
Q Consensus 7 ~~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~ 52 (1334)
++..+.+.+..+...+..+..+-.....++.++.++....++++.+
T Consensus 29 l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~ 74 (225)
T COG1842 29 LEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEK 74 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555666666666666666666666666666666666666
No 405
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=91.20 E-value=0.089 Score=32.74 Aligned_cols=15 Identities=27% Similarity=0.580 Sum_probs=12.8
Q ss_pred ccccccccccccccc
Q psy11935 872 LSELSGNVIDLCPVG 886 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvG 886 (1334)
.|+.||.|+.+||++
T Consensus 3 ~C~~C~~C~~~Cp~~ 17 (17)
T PF12800_consen 3 RCIGCGSCVDVCPTQ 17 (17)
T ss_dssp CCTTSSSSTTTSTT-
T ss_pred cCCCCchHHhhccCC
Confidence 588999999999974
No 406
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=91.20 E-value=0.094 Score=49.70 Aligned_cols=19 Identities=26% Similarity=0.504 Sum_probs=17.5
Q ss_pred ccccccccccccccccccc
Q psy11935 872 LSELSGNVIDLCPVGALTS 890 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~ 890 (1334)
.|+.||.|+.+||++||..
T Consensus 30 ~Ci~Cg~C~~~CP~~ai~~ 48 (99)
T COG1145 30 KCIGCGLCVKVCPTGAIEL 48 (99)
T ss_pred ccCCCCCchhhCCHHHhhc
Confidence 4999999999999999976
No 407
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=91.20 E-value=0.077 Score=48.41 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=18.7
Q ss_pred cccccccccccccccccccccC
Q psy11935 871 FLSELSGNVIDLCPVGALTSKP 892 (1334)
Q Consensus 871 ~~~~~cg~cv~~CpvGAl~~k~ 892 (1334)
..|+.||+|+++||+++|...+
T Consensus 8 ~~Ci~C~~Cv~~CP~~~i~~~~ 29 (80)
T TIGR03048 8 DTCIGCTQCVRACPTDVLEMVP 29 (80)
T ss_pred CcCcCcchHHHHCCccceeeec
Confidence 3689999999999999996544
No 408
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=91.19 E-value=0.2 Score=56.02 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=16.1
Q ss_pred ccccccccccccccccccc
Q psy11935 870 LFLSELSGNVIDLCPVGAL 888 (1334)
Q Consensus 870 ~~~~~~cg~cv~~CpvGAl 888 (1334)
...|..||+|.++||.|.=
T Consensus 199 l~~C~~C~~C~~vCPkgI~ 217 (251)
T PRK12386 199 LGYCNITKCCTEVCPEHIK 217 (251)
T ss_pred cccCcCCCCcCCcCCCCcC
Confidence 4569999999999998764
No 409
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.11 E-value=3.1 Score=48.43 Aligned_cols=31 Identities=10% Similarity=0.037 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhHhhhhhHHHHHHHHHHhhhh
Q psy11935 128 ENAAKQLKQISENEFKQKEKTIVENAAKQLKQI 160 (1334)
Q Consensus 128 ~~~~~~ie~~~~~~~l~n~~~~~~~~~~~~~~~ 160 (1334)
...-++++..++...+++++....+.+. ++.
T Consensus 103 ~~~~~l~~~~~e~~sl~~q~~~~~~~L~--~L~ 133 (314)
T PF04111_consen 103 ELQLELIEFQEERDSLKNQYEYASNQLD--RLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--CHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 3344455555666667777777777777 554
No 410
>KOG4438|consensus
Probab=91.05 E-value=39 Score=39.97 Aligned_cols=63 Identities=11% Similarity=0.100 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhh---HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy11935 23 EFYQTQLNNNQKAQDEIQTLLAKSASIKTE---LREFYQTQLNNNQKAQDEIQTLLAKSASIKTEL 85 (1334)
Q Consensus 23 ~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~---~~er~~~~~~~~~~l~~~i~~l~~~~~~~~~~l 85 (1334)
.++..+.+....+.+.+..+..++++..+. ..+..+.+..+++++.+.+.........+..+.
T Consensus 138 ~q~eslle~~~q~da~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~ 203 (446)
T KOG4438|consen 138 QQLESLLELRKQLDAKYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEY 203 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566666688888888888888 777777778888877777777666655555554
No 411
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=91.05 E-value=0.018 Score=48.73 Aligned_cols=16 Identities=31% Similarity=0.800 Sum_probs=8.2
Q ss_pred cccccccccccccccc
Q psy11935 871 FLSELSGNVIDLCPVG 886 (1334)
Q Consensus 871 ~~~~~cg~cv~~CpvG 886 (1334)
..|..||+|..+||+|
T Consensus 41 ~~C~~C~~C~~~CP~~ 56 (57)
T PF13183_consen 41 WSCTTCGACSEVCPVG 56 (57)
T ss_dssp GG-----HHHHH-TT-
T ss_pred cCCcCcCCccCcCccc
Confidence 5799999999999997
No 412
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=90.98 E-value=22 Score=36.95 Aligned_cols=67 Identities=7% Similarity=0.111 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Q psy11935 524 KEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRD 594 (1334)
Q Consensus 524 ~~~~~~~a~le~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (1334)
.+++++++.++++-.++......++.. +..+...+..-+.-+..+ .--+..+...+.++...+++++
T Consensus 87 ~~lQ~~L~~~re~E~qLr~rRD~LErr--l~~l~~tierAE~l~sqi--~vvl~yL~~dl~~v~~~~e~~~ 153 (159)
T PF05384_consen 87 HELQVRLAMLREREKQLRERRDELERR--LRNLEETIERAENLVSQI--GVVLNYLSGDLQQVSEQIEDAQ 153 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHHHHHHHHHHH
Confidence 445556666666666666665555555 555555554444444444 3334444444444444444433
No 413
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=90.97 E-value=56 Score=41.72 Aligned_cols=11 Identities=0% Similarity=0.024 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q psy11935 121 QKEKTIVENAA 131 (1334)
Q Consensus 121 ~~~~~i~~~~~ 131 (1334)
.+.++|++.+.
T Consensus 601 ~lkeki~~~~~ 611 (762)
T PLN03229 601 DLKEKVEKMKK 611 (762)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 414
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=90.96 E-value=17 Score=41.94 Aligned_cols=87 Identities=14% Similarity=0.060 Sum_probs=44.8
Q ss_pred ccchhhHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHhhHH
Q psy11935 399 FNEPALYTKTVRSVTLKISKEKIESLERNLQTETQRSRKLEEELQDTRQTCE----EVVRKEVSIVTVTLFLERLRSSHS 474 (1334)
Q Consensus 399 l~Rk~ei~~L~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~----e~~~~~~~~~~l~~~~~~~~~~~~ 474 (1334)
+.-..-+.+|+..+ .+.++++....-...+|..+...+.-+++.++..+. .+..+..++.....++++++..+.
T Consensus 73 ~dse~s~r~lk~~l--~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d 150 (302)
T PF09738_consen 73 VDSEASLRDLKDSL--AEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHD 150 (302)
T ss_pred ccccccHHHHHHHH--HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334677888888 888888877544444454444444444444444444 222222223333344455555555
Q ss_pred HHHhhHHHHHHHH
Q psy11935 475 KRSKNADSLVRLQ 487 (1334)
Q Consensus 475 ~~~~e~~~l~~~~ 487 (1334)
.+..+++.+..++
T Consensus 151 ~L~~e~~~Lre~L 163 (302)
T PF09738_consen 151 SLREELDELREQL 163 (302)
T ss_pred HHHHHHHHHHHHH
Confidence 5555544444444
No 415
>KOG2129|consensus
Probab=90.90 E-value=38 Score=39.57 Aligned_cols=37 Identities=11% Similarity=0.095 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 5 DEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQT 41 (1334)
Q Consensus 5 ~~~~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~ 41 (1334)
.++.+.+..+..+..-++.+++.++-.-..++++-.-
T Consensus 46 e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~ 82 (552)
T KOG2129|consen 46 ESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRP 82 (552)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCch
Confidence 3455556666666566666666655555555544333
No 416
>PLN02939 transferase, transferring glycosyl groups
Probab=90.88 E-value=42 Score=44.57 Aligned_cols=65 Identities=15% Similarity=0.189 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 53 LREFYQTQLNNNQKAQDEIQTLLAKSASIKT---ELREFYQTQLNNNVKEKLKEFQTQLDSAELTLHREF 119 (1334)
Q Consensus 53 ~~er~~~~~~~~~~l~~~i~~l~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 119 (1334)
+.+....++++.--++..+..++.++....+ .+-.+ +++..- ++..+.+++.++...++...++.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 291 (977)
T PLN02939 224 LSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKL-EKERSL-LDASLRELESKFIVAQEDVSKLS 291 (977)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHH-HHHHHHHHHHHHHhhhhhhhhcc
Confidence 3455555555555566666666555443332 33333 444444 56666666666666665554444
No 417
>PRK13984 putative oxidoreductase; Provisional
Probab=90.86 E-value=0.082 Score=67.84 Aligned_cols=90 Identities=9% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCcccccCCccchhhhhcccCccccccCC-----CCCceecccccccccccccccccccc
Q psy11935 809 EMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGNDLGTTGR-----GSDMQVGTYVEKLFLSELSGNVIDLC 883 (1334)
Q Consensus 809 ~~~r~~r~~~~~~ll~~h~~~C~~C~~~g~c~~~~~e~~g~~~~~~~~r-----g~~~~i~~~~~~~~~~~~cg~cv~~C 883 (1334)
+..+| +.|..| +..|- ..++.+... .....-..+.-....|..|+.|+++|
T Consensus 43 d~~~C--------------i~C~~C------~~~Cp----~~ai~~~~~~~~~~~~g~~~~~~~i~~~~c~~c~~c~~~C 98 (604)
T PRK13984 43 DWEKC--------------IGCGTC------SKICP----TDAITMVEVPDLPQEYGKKPQRPVIDYGRCSFCALCVDIC 98 (604)
T ss_pred ChhhC--------------cCccch------hhhCC----ccceEeeccccccccccccccccccCcccCcCcchHHhhC
Q ss_pred ccccccc--cCCcccCCCCcceeee-------------------------------------------------------
Q psy11935 884 PVGALTS--KPYSFTARPWETRKTE------------------------------------------------------- 906 (1334)
Q Consensus 884 pvGAl~~--k~~~~~~r~we~~~~~------------------------------------------------------- 906 (1334)
|++||+. +......++|.+...+
T Consensus 99 p~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~r~~~~~~~~~g~~~~ 178 (604)
T PRK13984 99 TTGSLKMTREYIHISPDPEDFIFMPTEKGINAKEPDNAPLGWVRDENSELLDLERVEMEEIPPEERVKSFIEIVKGYSKE 178 (604)
T ss_pred CcCcEEecceEEEeecChhhEEEecHhhCCCcccccccccccccChhhhhhccccCCcccCCHHHHHhchhhhccCCCHH
Q ss_pred ---------eecccCCCCCceEEEe
Q psy11935 907 ---------SVDVLDAVGSNIIVST 922 (1334)
Q Consensus 907 ---------s~c~~C~~gC~i~v~v 922 (1334)
+.|..|..+|+..+..
T Consensus 179 ~~~~~~~~C~~Cg~C~~~CP~~~~i 203 (604)
T PRK13984 179 QAMQEAARCVECGICTDTCPAHMDI 203 (604)
T ss_pred HHHHhhhhhcCCCcccccCCCCCCH
No 418
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=90.86 E-value=30 Score=39.33 Aligned_cols=47 Identities=17% Similarity=0.225 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 145 KEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQ 193 (1334)
Q Consensus 145 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~ 193 (1334)
++...++.-+. +..++...++-.++.+..+..+.+.+-.+++.++.+
T Consensus 127 ~~~q~LE~li~--~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE 173 (401)
T PF06785_consen 127 GDIQHLEGLIR--HLREENQCLQLQLDALQQECGEKEEESQTLNRELAE 173 (401)
T ss_pred chHHHHHHHHH--HHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 34444444444 333333333333333344443333333334333333
No 419
>PF13166 AAA_13: AAA domain
Probab=90.77 E-value=36 Score=44.74 Aligned_cols=9 Identities=0% Similarity=0.143 Sum_probs=5.5
Q ss_pred CcEEEEECC
Q psy11935 663 EKFEVFIDD 671 (1334)
Q Consensus 663 ~~~~~~idg 671 (1334)
....|.++|
T Consensus 485 ~~y~l~~~~ 493 (712)
T PF13166_consen 485 KGYKLQRKG 493 (712)
T ss_pred CeEEEEECC
Confidence 346677766
No 420
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=90.76 E-value=16 Score=43.32 Aligned_cols=36 Identities=11% Similarity=0.100 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 4 QDEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEI 39 (1334)
Q Consensus 4 l~~~~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i 39 (1334)
|.+...++..++.++...+-.|.+.....+.+-..+
T Consensus 10 L~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i 45 (344)
T PF12777_consen 10 LKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEI 45 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555554444444443
No 421
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=90.56 E-value=31 Score=38.05 Aligned_cols=46 Identities=4% Similarity=0.137 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy11935 7 IQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE 52 (1334)
Q Consensus 7 ~~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~ 52 (1334)
++..+.+++..+...+..+.........++.++.++...+++++.+
T Consensus 28 l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~ 73 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQ 73 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666666666666666666666665
No 422
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=90.46 E-value=0.16 Score=56.70 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=8.4
Q ss_pred ccccccccccccccccc
Q psy11935 873 SELSGNVIDLCPVGALT 889 (1334)
Q Consensus 873 ~~~cg~cv~~CpvGAl~ 889 (1334)
|+.||.|+.+||.||+.
T Consensus 132 CigC~~Cv~aCP~~Ai~ 148 (244)
T PRK14993 132 CVGCAYCVQACPYDARF 148 (244)
T ss_pred CCCHHHHHHhcCCCCCE
Confidence 44455555555555543
No 423
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=90.45 E-value=0.13 Score=59.84 Aligned_cols=48 Identities=21% Similarity=0.209 Sum_probs=28.9
Q ss_pred ccccccc--ccccccccccccccCCcccCCCCcceeeeeecccCCCCCceEE
Q psy11935 871 FLSELSG--NVIDLCPVGALTSKPYSFTARPWETRKTESVDVLDAVGSNIIV 920 (1334)
Q Consensus 871 ~~~~~cg--~cv~~CpvGAl~~k~~~~~~r~we~~~~~s~c~~C~~gC~i~v 920 (1334)
..|..|+ .|+.+||+|||...+.. ..-.++. ..-.-|..|...|+..+
T Consensus 110 ~~C~hC~~p~Cv~aCP~gAi~k~~~~-g~V~id~-dkCigCg~Cv~aCP~ga 159 (328)
T PRK10882 110 KQCMHCVDPNCVSVCPVSALTKDPKT-GIVHYDK-DVCTGCRYCMVACPFNV 159 (328)
T ss_pred ccCCCcCchhhHhhCCCCCEEecccC-CcccCCH-HHcCcccHHHHhCCccc
Confidence 3689998 79999999999754320 0111211 11233666667887554
No 424
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=90.20 E-value=0.11 Score=61.11 Aligned_cols=15 Identities=20% Similarity=0.514 Sum_probs=10.7
Q ss_pred CHHHHHHHHHHHhcc
Q psy11935 975 EWEDALIAVAQKLQT 989 (1334)
Q Consensus 975 SWdeAl~~ia~~L~~ 989 (1334)
.|+++++.+...+.-
T Consensus 270 ~~e~~~~~i~~i~~~ 284 (341)
T TIGR02066 270 RWPELVAYVKKILEA 284 (341)
T ss_pred chHHHHHHHHHHHHH
Confidence 388888887766653
No 425
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=90.18 E-value=0.11 Score=51.41 Aligned_cols=20 Identities=15% Similarity=0.291 Sum_probs=17.7
Q ss_pred cccccccccccccccccccc
Q psy11935 872 LSELSGNVIDLCPVGALTSK 891 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~k 891 (1334)
.|+.||.|+.+||+||+...
T Consensus 43 ~Ci~C~~C~~~CP~~ai~~~ 62 (120)
T PRK08348 43 KCVGCRMCVTVCPAGVFVYL 62 (120)
T ss_pred cCcCcccHHHHCCccceEcc
Confidence 69999999999999999543
No 426
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=90.17 E-value=14 Score=35.18 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=16.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 573 KAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELM 614 (1334)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l 614 (1334)
...+.+++..+..+...++..+....+++..+.+....+..+
T Consensus 57 ~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~~dka~l 98 (107)
T PF09304_consen 57 NQRIAELQAKIDEARRNLEDEKQAKLELESRLLKAQKDKAIL 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 333333333443333434333333334444444444333333
No 427
>KOG0243|consensus
Probab=90.15 E-value=79 Score=42.04 Aligned_cols=11 Identities=36% Similarity=0.552 Sum_probs=6.5
Q ss_pred CCCCCchhhhH
Q psy11935 730 QGGECDLQDQS 740 (1334)
Q Consensus 730 ~~g~c~lq~~~ 740 (1334)
..++|-+.++.
T Consensus 964 ~~~e~~~~~~~ 974 (1041)
T KOG0243|consen 964 NSGETSLDDYV 974 (1041)
T ss_pred ccccccchhhc
Confidence 45677655544
No 428
>KOG4673|consensus
Probab=90.02 E-value=60 Score=40.46 Aligned_cols=35 Identities=3% Similarity=-0.083 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 3 AQDEIQTLLAKSASIKTELREFYQTQLNNNQKAQD 37 (1334)
Q Consensus 3 ~l~~~~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~ 37 (1334)
+|.++..++.-+...++..+.++-..+.+...+.+
T Consensus 347 eLdK~~~~i~~Ln~~leaReaqll~~e~~ka~lee 381 (961)
T KOG4673|consen 347 ELDKTKKEIKMLNNALEAREAQLLADEIAKAMLEE 381 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666655555555555444444
No 429
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=89.99 E-value=26 Score=36.33 Aligned_cols=41 Identities=12% Similarity=0.274 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy11935 72 QTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQLDSAELT 114 (1334)
Q Consensus 72 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 114 (1334)
..+..++..++.++... ...++. +..........|.++...
T Consensus 30 ~~l~~EL~evk~~v~~~-I~evD~-Le~~er~aR~rL~eVS~~ 70 (159)
T PF05384_consen 30 ERLRKELEEVKEEVSEV-IEEVDK-LEKRERQARQRLAEVSRN 70 (159)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHhh
Confidence 33333333344434333 333344 444444444444444444
No 430
>KOG4302|consensus
Probab=89.95 E-value=19 Score=45.55 Aligned_cols=96 Identities=14% Similarity=0.072 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh-hhhhhhhHhhHHHH---------HHHHHHHHHHH
Q psy11935 521 EKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQISEKPGA-TKLMLDFKAKCEVY---------EAENKKLKAEL 590 (1334)
Q Consensus 521 ~~l~~~~~~~a~le~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-ei~~~~~~~~~~~~---------~~~~~~~~~~~ 590 (1334)
.+|.+++..+..++.+.......+..+... +..+-..+.-.-. -+..+ +..+... ...+..+...+
T Consensus 160 ~kLeelr~~L~~L~~ek~~Rlekv~~~~~~--I~~l~~~Lg~~~~~~vt~~--~~sL~~~~~~~~~~is~etl~~L~~~v 235 (660)
T KOG4302|consen 160 EKLEELREHLNELQKEKSDRLEKVLELKEE--IKSLCSVLGLDFSMTVTDV--EPSLVDHDGEQSRSISDETLDRLDKMV 235 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhCCCcccchhhh--hhhhhhccCcccccCCHHHHHHHHHHH
Confidence 777788888888888887777777777777 7777777632222 22222 2222222 22333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 591 TQRDIKLKETNHLLKEESKKRELMAKKVES 620 (1334)
Q Consensus 591 ~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~ 620 (1334)
+.++.+..+.-+.+..+..+...|...++.
T Consensus 236 ~~l~~~k~qr~~kl~~l~~~~~~LWn~l~t 265 (660)
T KOG4302|consen 236 KKLKEEKKQRLQKLQDLRTKLLELWNLLDT 265 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 444444444444444444444444444333
No 431
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=89.76 E-value=4.9 Score=49.22 Aligned_cols=46 Identities=26% Similarity=0.298 Sum_probs=21.2
Q ss_pred hhHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 403 ALYTKTVRSVTLKISKEKIESLERNLQTETQRSRKLEEELQDTRQTCE 450 (1334)
Q Consensus 403 ~ei~~L~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~ 450 (1334)
+++.++..++ +.++.+...|+..+.+++.++.+|+.+++.++.+..
T Consensus 422 ~~i~~~~~~v--e~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 422 KRIKKLEETV--ERLEEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444 444444444444444444444444444444444443
No 432
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=89.67 E-value=0.18 Score=66.65 Aligned_cols=56 Identities=18% Similarity=0.229 Sum_probs=30.7
Q ss_pred CCCccc-ccCCccchhhhhcccCccccccC-CCCCceeccccccccccccccccccccccccc
Q psy11935 828 LDCPIC-DQGGECDLQDQSMAFGNDLGTTG-RGSDMQVGTYVEKLFLSELSGNVIDLCPVGAL 888 (1334)
Q Consensus 828 ~~C~~C-~~~g~c~~~~~e~~g~~~~~~~~-rg~~~~i~~~~~~~~~~~~cg~cv~~CpvGAl 888 (1334)
..|..| ..||.|+..|=.-+ ...+...+ ++.+..+.. .-.|+.||+|+.+||++|=
T Consensus 886 ~rC~~C~~~C~~C~~vCP~~A-~~~i~~~g~~~~~~~~~~----~~~C~~CG~C~~~CP~~~~ 943 (1019)
T PRK09853 886 ARCLECNYVCEKCVDVCPNRA-NVSIAVPGFQNRFQIVHL----DAMCNECGNCAQFCPWNGK 943 (1019)
T ss_pred cccCCcccccchhhhhCCccc-ccccccCCcccCCceEEc----CccCccccchhhhCCCCCC
Confidence 345555 34588888883211 01122222 221211111 2369999999999999776
No 433
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=89.65 E-value=0.066 Score=59.84 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=17.9
Q ss_pred ccccccccc--cccccccccccc
Q psy11935 870 LFLSELSGN--VIDLCPVGALTS 890 (1334)
Q Consensus 870 ~~~~~~cg~--cv~~CpvGAl~~ 890 (1334)
+..|..|++ |+.+||+||+..
T Consensus 97 ~~~C~~C~~p~Cv~~CP~~Ai~~ 119 (244)
T PRK14993 97 PRLCNHCDNPPCVPVCPVQATFQ 119 (244)
T ss_pred chhcCCcCCccCccccCCCCEEE
Confidence 446999998 999999999843
No 434
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=89.65 E-value=4.3 Score=49.62 Aligned_cols=80 Identities=11% Similarity=0.121 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh------HHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy11935 7 IQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE------LREFYQTQLNNNQKAQDEIQTLLAKSAS 80 (1334)
Q Consensus 7 ~~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~------~~er~~~~~~~~~~l~~~i~~l~~~~~~ 80 (1334)
..+.+..++...+.++.+...|+..++.++.++..+..++++...+ ..-.+.+...++..|+.++.+-...++.
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~ 499 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEE 499 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444433 2223333444444444444444444444
Q ss_pred HHHHHH
Q psy11935 81 IKTELR 86 (1334)
Q Consensus 81 ~~~~l~ 86 (1334)
++.++.
T Consensus 500 L~~~l~ 505 (652)
T COG2433 500 LERKLA 505 (652)
T ss_pred HHHHHH
Confidence 444443
No 435
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=89.63 E-value=0.14 Score=56.83 Aligned_cols=17 Identities=29% Similarity=0.610 Sum_probs=14.5
Q ss_pred ccccccccccccccccc
Q psy11935 872 LSELSGNVIDLCPVGAL 888 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl 888 (1334)
.|+.||+|.++||+||.
T Consensus 222 ~ci~c~~c~~ac~~gav 238 (354)
T COG2768 222 KCIGCGQCMEACPYGAV 238 (354)
T ss_pred hccchhhhhhhccCccc
Confidence 58888888888888888
No 436
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=89.61 E-value=0.12 Score=55.02 Aligned_cols=45 Identities=18% Similarity=0.185 Sum_probs=28.7
Q ss_pred ccccccccccccccccccccCCc-ccCCCCcceeeeeecccCC---CCCce
Q psy11935 872 LSELSGNVIDLCPVGALTSKPYS-FTARPWETRKTESVDVLDA---VGSNI 918 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~k~~~-~~~r~we~~~~~s~c~~C~---~gC~i 918 (1334)
.|+.||.|+.+||+|||+..... ...+.|.+ ....|.+|+ ..|+.
T Consensus 39 ~Ci~Cg~Cv~aCP~~Ai~~~~~~~~~~~~~~~--~~~~C~~Cg~C~~~CPt 87 (181)
T PRK08222 39 QCIACGACTCACPANALTIQTDDQQNSRTWQL--YLGRCIYCGRCEEVCPT 87 (181)
T ss_pred hCcchhHHHHhCCccceEcccccccCccceee--ccCcCcCCCCcccccCc
Confidence 59999999999999999754322 22344543 234455543 45654
No 437
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=89.60 E-value=0.17 Score=65.13 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=16.7
Q ss_pred ccccccccc--ccccccccccccc
Q psy11935 870 LFLSELSGN--VIDLCPVGALTSK 891 (1334)
Q Consensus 870 ~~~~~~cg~--cv~~CpvGAl~~k 891 (1334)
+..|..|+. |+.+||+|||...
T Consensus 53 ~~~C~~C~~~~C~~~CP~~ai~~~ 76 (639)
T PRK12809 53 PVACHHCNNAPCVTACPVNALTFQ 76 (639)
T ss_pred CCCCcCcCChhHHhhCCcCceecc
Confidence 446888887 8888888888543
No 438
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=89.41 E-value=0.11 Score=62.64 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=15.2
Q ss_pred cccccccccccccccccc
Q psy11935 871 FLSELSGNVIDLCPVGAL 888 (1334)
Q Consensus 871 ~~~~~cg~cv~~CpvGAl 888 (1334)
..|+.||.|+++||. |+
T Consensus 255 ~~Ci~Cg~CidaCp~-a~ 271 (434)
T TIGR02745 255 LECINCGLCIDACDD-VM 271 (434)
T ss_pred hhChhhhHHHHhCCC-hH
Confidence 479999999999998 76
No 439
>PLN00071 photosystem I subunit VII; Provisional
Probab=89.41 E-value=0.12 Score=47.18 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=18.6
Q ss_pred ccccccccccccccccccccC
Q psy11935 872 LSELSGNVIDLCPVGALTSKP 892 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~k~ 892 (1334)
.|+.||+|+.+||++||...+
T Consensus 10 ~C~~C~~C~~~CP~~~i~~~~ 30 (81)
T PLN00071 10 TCIGCTQCVRACPTDVLEMIP 30 (81)
T ss_pred cCcChhHHHHHCCccceeeec
Confidence 699999999999999997554
No 440
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=89.38 E-value=0.23 Score=56.51 Aligned_cols=11 Identities=27% Similarity=0.809 Sum_probs=7.2
Q ss_pred ccccccccccc
Q psy11935 878 NVIDLCPVGAL 888 (1334)
Q Consensus 878 ~cv~~CpvGAl 888 (1334)
.|+.+||+|||
T Consensus 167 aCv~aCP~gAi 177 (283)
T TIGR01582 167 ACVKTCPTNAI 177 (283)
T ss_pred hHhCcccHhhE
Confidence 56666666666
No 441
>KOG0982|consensus
Probab=89.34 E-value=52 Score=38.80 Aligned_cols=18 Identities=11% Similarity=0.045 Sum_probs=7.4
Q ss_pred HHHHHHHhhchhhhhhhh
Q psy11935 553 AKQLKQISEKPGATKLML 570 (1334)
Q Consensus 553 ~~~~~~~l~~~~~ei~~~ 570 (1334)
.+..++-+.++..++..+
T Consensus 369 keatqELieelrkelehl 386 (502)
T KOG0982|consen 369 KEATQELIEELRKELEHL 386 (502)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344444444444443333
No 442
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=89.32 E-value=0.13 Score=57.26 Aligned_cols=21 Identities=19% Similarity=0.369 Sum_probs=18.4
Q ss_pred ccccccccccccccccccccc
Q psy11935 871 FLSELSGNVIDLCPVGALTSK 891 (1334)
Q Consensus 871 ~~~~~cg~cv~~CpvGAl~~k 891 (1334)
..|..||.|+++||+|||...
T Consensus 177 ~~C~~Cg~C~~~CP~~AI~~~ 197 (234)
T TIGR02700 177 LKCVGCGKCKEACPYNAIHGG 197 (234)
T ss_pred hhCCccchHHhhCCCCceecC
Confidence 469999999999999999654
No 443
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=89.24 E-value=0.18 Score=60.44 Aligned_cols=33 Identities=24% Similarity=0.140 Sum_probs=23.6
Q ss_pred EEECC------EEEEeCCCCcchhhhhhhcC-CCCCCCEE
Q psy11935 667 VFIDD------KKVMVDPGTTVLQPVAACAM-PVMKGWRV 699 (1334)
Q Consensus 667 ~~idg------~~~~v~~g~til~~~~ac~~-~~~~gm~v 699 (1334)
+|++| +.|.|+=||+|-++-..|.. ...+++.|
T Consensus 287 vTltG~av~~p~nv~VrIGTP~~~lL~~~G~~~~~~~~vi 326 (529)
T COG4656 287 VTLTGDAVKRPKNVWVRIGTPVSQLLNEAGGIDTKPYRVI 326 (529)
T ss_pred EEeecccccCCccEEEECCCcHHHHHHHcCCCCCCCceEE
Confidence 77888 67889999999998888853 23344433
No 444
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=89.23 E-value=0.13 Score=45.46 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=15.6
Q ss_pred cccccccccccccccccc
Q psy11935 870 LFLSELSGNVIDLCPVGA 887 (1334)
Q Consensus 870 ~~~~~~cg~cv~~CpvGA 887 (1334)
...|+.||+|+++||+|-
T Consensus 49 ~~~CVgCgrCv~~CP~~I 66 (69)
T PF13746_consen 49 EGDCVGCGRCVRVCPAGI 66 (69)
T ss_pred CccCCCcChHhhhcCCCC
Confidence 447999999999999973
No 445
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=89.19 E-value=0.23 Score=52.21 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=17.3
Q ss_pred ccccccccccccccccccc
Q psy11935 872 LSELSGNVIDLCPVGALTS 890 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~ 890 (1334)
.|+.||.|+.+||+||+.-
T Consensus 59 ~Ci~C~~C~~~CP~~ai~~ 77 (164)
T PRK05888 59 RCIACKLCAAICPADAITI 77 (164)
T ss_pred cCCcccChHHHcCcccccc
Confidence 6999999999999999854
No 446
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=89.17 E-value=20 Score=40.42 Aligned_cols=76 Identities=11% Similarity=0.103 Sum_probs=37.5
Q ss_pred hcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy11935 161 SEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQAIHMITSD 237 (1334)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (1334)
.+..+.+..+..+.++-..++.+++....+++-.+++++.++.-.=....+.+.++.++..+ -..+-..-+++.-+
T Consensus 176 ~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~l-Y~~Y~~kfRNl~yL 251 (267)
T PF10234_consen 176 QQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKL-YEIYVEKFRNLDYL 251 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHH
Confidence 33444444455555555555555555555555555555555555444454555555555555 44444333333333
No 447
>PRK07440 hypothetical protein; Provisional
Probab=89.16 E-value=0.63 Score=41.23 Aligned_cols=25 Identities=8% Similarity=0.226 Sum_probs=22.1
Q ss_pred CCcEEEEECCEEEEeCCCCcchhhh
Q psy11935 662 NEKFEVFIDDKKVMVDPGTTVLQPV 686 (1334)
Q Consensus 662 ~~~~~~~idg~~~~v~~g~til~~~ 686 (1334)
+.+++|+|||+++++++|.||.++.
T Consensus 2 ~~~m~i~vNG~~~~~~~~~tl~~lL 26 (70)
T PRK07440 2 SNPITLQVNGETRTCSSGTSLPDLL 26 (70)
T ss_pred CCceEEEECCEEEEcCCCCCHHHHH
Confidence 4579999999999999999999843
No 448
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=89.15 E-value=62 Score=39.44 Aligned_cols=235 Identities=17% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHhHhhhHHHHHHH----HHhhh
Q psy11935 4 QDEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQT---------------LLAKSASIKTELREFYQT----QLNNN 64 (1334)
Q Consensus 4 l~~~~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~---------------l~~~ie~l~~~~~er~~~----~~~~~ 64 (1334)
+.....+...+-.....+..-+..|+..+...+..+.+ ..++++.++..+.+.+.. .+...
T Consensus 253 ~~~~~~E~~~l~eq~~~ld~AV~~Ltk~v~~~q~sL~kvl~aE~kaR~~k~~~e~sk~eeL~~~L~~~lea~q~agkla~ 332 (531)
T PF15450_consen 253 LGGIQSEESKLLEQCRKLDEAVAQLTKFVQQNQKSLNKVLNAEQKARDAKEKLEESKAEELATKLQENLEAMQLAGKLAQ 332 (531)
T ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHhhhhhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy11935 65 QKAQDEIQTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQISENEFKQ 144 (1334)
Q Consensus 65 ~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~i~~~~~~~ie~~~~~~~l~ 144 (1334)
+.....+..+++...-++.....+ ...+.. +...+..+...++--++.+...-.....+++....+ .++.++...
T Consensus 333 Qe~~~~ld~LqEksqile~sv~~l-~~~lkD-Ld~~~~aLs~rld~qEqtL~~rL~e~~~e~~~~~r~---~lekl~~~q 407 (531)
T PF15450_consen 333 QETQSELDLLQEKSQILEDSVAEL-MRQLKD-LDDHILALSWRLDLQEQTLNLRLSEAKNEWESDERK---SLEKLDQWQ 407 (531)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q ss_pred hhHHHHHHHHHHhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H
Q psy11935 145 KEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLK-AELTQRDIKLKETNHLLKEESKKRELMAK-----K 218 (1334)
Q Consensus 145 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~-~~l~~~~~~l~~l~~~~~~~~~~~~~~~~-----~ 218 (1334)
++.......++ ++..++-.++..+...+.-....++-.- .+-+....++..++..+..+...++-+.. +
T Consensus 408 ~e~~~~l~~v~-----eKVd~LpqqI~~vs~Kc~~~Ksd~d~kIdtE~k~R~~eV~~vRqELa~lLssvQ~~~e~~~~rk 482 (531)
T PF15450_consen 408 NEMEKHLKEVQ-----EKVDSLPQQIEEVSDKCDLHKSDSDTKIDTEGKAREREVGAVRQELATLLSSVQLLKEDNPGRK 482 (531)
T ss_pred HHHHHHHHHHH-----HHHHhhhHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhh
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHhccC
Q psy11935 219 VESVMQSQLQQAIHMITSDVTHLHTSKESLATR 251 (1334)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~srl~~Vk~vL~~~ 251 (1334)
+.+. +..+. ...+..+..-+..+|+|++.+
T Consensus 483 iaei-qg~l~--~~qi~kle~siq~nKtiqn~k 512 (531)
T PF15450_consen 483 IAEI-QGKLA--TNQIMKLENSIQTNKTIQNLK 512 (531)
T ss_pred HHHH-HHHHH--HHHHHHHHHHHHHHHHHHhcc
No 449
>PRK02651 photosystem I subunit VII; Provisional
Probab=89.01 E-value=0.18 Score=46.04 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=18.7
Q ss_pred cccccccccccccccccccccC
Q psy11935 871 FLSELSGNVIDLCPVGALTSKP 892 (1334)
Q Consensus 871 ~~~~~cg~cv~~CpvGAl~~k~ 892 (1334)
-.|+.||.|+++||+++++..+
T Consensus 9 ~~Ci~C~~C~~~CP~~~i~~~~ 30 (81)
T PRK02651 9 DTCIGCTQCVRACPLDVLEMVP 30 (81)
T ss_pred ccCCCcchHHHHCCccceeccc
Confidence 4699999999999999986543
No 450
>PRK06273 ferredoxin; Provisional
Probab=88.87 E-value=0.15 Score=53.23 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=17.9
Q ss_pred cccccccccccccccccccc
Q psy11935 872 LSELSGNVIDLCPVGALTSK 891 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~k 891 (1334)
.|+.||.|+.+||+|||...
T Consensus 50 ~CigCg~C~~aCP~~AI~~~ 69 (165)
T PRK06273 50 LCIGCGGCANVCPTKAIEMI 69 (165)
T ss_pred hCcChhHHHHhcCccceeee
Confidence 59999999999999999644
No 451
>TIGR00276 iron-sulfur cluster binding protein, putative. This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.
Probab=88.84 E-value=0.11 Score=59.14 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=17.2
Q ss_pred ccccccccccccccccccc
Q psy11935 872 LSELSGNVIDLCPVGALTS 890 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~ 890 (1334)
.|..||.|+++||||||..
T Consensus 160 ~C~~C~~C~~aCPt~AI~~ 178 (282)
T TIGR00276 160 YCGRCTKCIDACPTQALVE 178 (282)
T ss_pred CCccHHHHHHhcCcccccC
Confidence 5889999999999999963
No 452
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=88.79 E-value=0.23 Score=54.99 Aligned_cols=42 Identities=10% Similarity=0.015 Sum_probs=27.0
Q ss_pred ccccccccccccccccccccCCcccCCCCcceeeeeecccCC---CCCceE
Q psy11935 872 LSELSGNVIDLCPVGALTSKPYSFTARPWETRKTESVDVLDA---VGSNII 919 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~k~~~~~~r~we~~~~~s~c~~C~---~gC~i~ 919 (1334)
.|+.||.|.++|+-||+.- +..+.|. ..++.|..|+ .-|+..
T Consensus 70 ~C~~CG~C~~vC~f~Ai~~----~~~~~~~--~~~~lC~GCgaC~~~CP~~ 114 (284)
T COG1149 70 KCIRCGKCAEVCRFGAIVV----LPGGKPV--LNPDLCEGCGACSIVCPEP 114 (284)
T ss_pred hccccCcHHHhCCCCeEEE----cCCCcee--cCcccccCcccceeeCCCc
Confidence 4999999999999999932 1223332 2345566554 456554
No 453
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=88.73 E-value=3.6 Score=43.14 Aligned_cols=120 Identities=16% Similarity=0.107 Sum_probs=66.7
Q ss_pred HHHHHHHhcCCCcEEEEcCCcccHHHHHHHHHHHHHhhcCCCCC----CCCCcccccchhhhhhhhhh-hcCCCcchhhH
Q psy11935 1114 HPFSKKLSAAKKPLIVVGADISDGAAVLALVQQLAAKVTCESDV----PCDWKVLNILQKAASQVAAL-DIGYKPGTSAI 1188 (1334)
Q Consensus 1114 ~~~A~~l~~a~~~~ii~G~~~~~g~~~~~al~~l~~~~g~~Gg~----~~~~~~~~~l~~~~n~~G~~-~~g~~pg~~~i 1188 (1334)
..+++.+.+|++|+|++|.++.........+..++..++-|-.. ..++.+-.+.+. ....|.. ..+..|+++.+
T Consensus 25 ~~aa~lI~~AKrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~~~~~~~~kgv~~~-~~~lg~lg~~~~~p~~e~~ 103 (171)
T PRK00945 25 KIAAMMIKKAKRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGGSYKGLIDKGVDAK-YINLHELTNYLKDPNWKGL 103 (171)
T ss_pred HHHHHHHHhCCCcEEEECcCccccchHHHHHHHHHHHHCCCEEEccccccccccCCccCC-cccHHHHHhhccCchhhhh
Confidence 45678889999999999999833234455677777776654100 000001111111 1112221 23445777776
Q ss_pred h-cCCCcEEEEECCChhhh--HHhh---cCCCceEEEEcCCCChhhccccEEecCC
Q psy11935 1189 R-EKPPKVLFLLGADEGSI--SRDD---VGKDCFIIYQGHHGDHGASIADAILPGA 1238 (1334)
Q Consensus 1189 ~-~g~ik~l~~~g~np~~~--~~~a---l~k~~fvV~~d~~~~eta~~ADvVLP~a 1238 (1334)
. +|..+.++++|.+.... .... +... -+|.++-+.. .-||+-+|.-
T Consensus 104 ~g~~~~DlvlfvG~~~~~~~~~l~~lk~f~~~-~~~~~~~~y~---~~a~~s~~~~ 155 (171)
T PRK00945 104 DGNGNYDLVIFIGVTYYYASQGLSALKHFSPL-KTITIDRYYH---PNADMSFPNL 155 (171)
T ss_pred cCCCCcCEEEEecCCchhHHHHHHHHhhcCCc-eEEEecCCcC---CCCceecCCC
Confidence 4 36899999999997332 2223 3332 3566766553 3456666644
No 454
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=88.70 E-value=1.2e+02 Score=41.96 Aligned_cols=47 Identities=13% Similarity=0.126 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 584 KKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQAIH 631 (1334)
Q Consensus 584 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~~~w~~~~~ 631 (1334)
.............+..++..+.........+.+.+.... ..|...+.
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~L~ 759 (1047)
T PRK10246 713 TVALDNWRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQ-AQFDTALQ 759 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 334455555556666666666666666666666666666 67777653
No 455
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=88.68 E-value=59 Score=39.84 Aligned_cols=98 Identities=8% Similarity=0.064 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 518 NVKEKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKL 597 (1334)
Q Consensus 518 ~l~~~l~~~~~~~a~le~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (1334)
-...++.++-.++...+-+......+...+... ++..+.+...+..+++.. ...+..++.+...... ..+.++
T Consensus 417 ~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~r--L~~aE~ek~~l~eeL~~a--~~~i~~LqDEL~TTr~---NYE~QL 489 (518)
T PF10212_consen 417 YYMSRIEELTSQLQHADSKAVHFYAECRALQKR--LESAEKEKESLEEELKEA--NQNISRLQDELETTRR---NYEEQL 489 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHh---hHHHHH
Confidence 334555555555555555555555555555555 555555555555555555 5555544444433322 344556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 598 KETNHLLKEESKKRELMAKKVESVM 622 (1334)
Q Consensus 598 ~~l~~~l~~~~~~~~~l~~~i~~~~ 622 (1334)
..+.+-+..+.+++....++|+.+|
T Consensus 490 s~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 490 SMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666666666666777666
No 456
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=88.53 E-value=0.23 Score=53.03 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=18.6
Q ss_pred ccccccc------ccccccccccccccC
Q psy11935 871 FLSELSG------NVIDLCPVGALTSKP 892 (1334)
Q Consensus 871 ~~~~~cg------~cv~~CpvGAl~~k~ 892 (1334)
..|.+|| .|+.+||+|||+..+
T Consensus 129 ~kC~~C~~~~~~paCv~~CP~~Al~~~~ 156 (181)
T PRK10330 129 NKCDLCNHREDGPACMAACPTHALICVD 156 (181)
T ss_pred eeCcCCCCCCCCccchhhCchhhEEEeC
Confidence 4699998 899999999996543
No 457
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=88.45 E-value=0.23 Score=55.01 Aligned_cols=33 Identities=18% Similarity=0.124 Sum_probs=23.7
Q ss_pred ccccccccccccccccccccCCcccCCCCcceeeeeecccCC
Q psy11935 872 LSELSGNVIDLCPVGALTSKPYSFTARPWETRKTESVDVLDA 913 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~k~~~~~~r~we~~~~~s~c~~C~ 913 (1334)
.|+.||.|+.+||.||+...+. .....-|.+|+
T Consensus 126 ~C~~C~~C~~aCP~~A~~~~~~---------~~~~~kC~~C~ 158 (225)
T TIGR03149 126 LCVGCQYCIAACPYRVRFIHPV---------TKSADKCNFCR 158 (225)
T ss_pred hCCcchHHHHhCCCCCcEecCC---------CCccccCCCCC
Confidence 5999999999999999843221 12345677775
No 458
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=88.41 E-value=0.17 Score=50.24 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=18.7
Q ss_pred cccccccccccccccccccccC
Q psy11935 871 FLSELSGNVIDLCPVGALTSKP 892 (1334)
Q Consensus 871 ~~~~~cg~cv~~CpvGAl~~k~ 892 (1334)
..|+.||.|+++||++|+....
T Consensus 43 ~~Ci~C~~C~~~CP~~ai~~~~ 64 (122)
T TIGR01971 43 EKCIGCTLCAAVCPADAIRVVP 64 (122)
T ss_pred CcCcCcchhhhhcCHhHeeeee
Confidence 4699999999999999986543
No 459
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=88.14 E-value=77 Score=39.25 Aligned_cols=39 Identities=8% Similarity=0.061 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy11935 14 SASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE 52 (1334)
Q Consensus 14 ~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~ 52 (1334)
.+......+....-+..++..++..+...+...+....+
T Consensus 186 ~~~~~~~~~~~~~~l~~~l~~lr~~~~~ae~~~~~~~~~ 224 (458)
T COG3206 186 LEAQLEAFRRASDSLDERLEELRARLQEAEAQVEDFRAQ 224 (458)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555556666666666666665555555544444
No 460
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=88.10 E-value=68 Score=38.64 Aligned_cols=102 Identities=15% Similarity=0.197 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhHhhHHH-----------------H
Q psy11935 517 NNVKEKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEV-----------------Y 579 (1334)
Q Consensus 517 ~~l~~~l~~~~~~~a~le~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ei~~~~~~~~~~~-----------------~ 579 (1334)
..+...+.+.+.-...++.++.....++..++.. +..++..+.++..-++-. ..+++. +
T Consensus 247 ~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~--i~~L~~ai~~k~~~lkva--qTRL~~R~~RP~vElcrD~~q~~L 322 (384)
T PF03148_consen 247 AALRKRIHETQEAKNELEWQLKKTLQEIAEMEKN--IEDLEKAIRDKEGPLKVA--QTRLENRTQRPNVELCRDPPQYGL 322 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHhhHHHH--HHHHhhHhcCCchHHHHhhHHHHH
Confidence 5566777777777777777777777777777777 777777776666544333 333221 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 580 EAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVM 622 (1334)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~ 622 (1334)
..+...+...+..++.++...+..+..+...+..++..|.-..
T Consensus 323 ~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~K~ 365 (384)
T PF03148_consen 323 IEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIAVKN 365 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334445555555555555555556666665555555555433
No 461
>PRK10698 phage shock protein PspA; Provisional
Probab=88.10 E-value=47 Score=36.73 Aligned_cols=42 Identities=12% Similarity=0.161 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy11935 11 LAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE 52 (1334)
Q Consensus 11 ~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~ 52 (1334)
+.+++..+.+.+..+...-.....++.++..+...+++++.+
T Consensus 33 i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~k 74 (222)
T PRK10698 33 IQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEK 74 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555555555555555555
No 462
>CHL00065 psaC photosystem I subunit VII
Probab=88.04 E-value=0.2 Score=45.82 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=18.4
Q ss_pred ccccccccccccccccccccC
Q psy11935 872 LSELSGNVIDLCPVGALTSKP 892 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~k~ 892 (1334)
.|+.||.|+.+||+++++..+
T Consensus 10 ~Ci~Cg~C~~~CP~~~i~~~~ 30 (81)
T CHL00065 10 TCIGCTQCVRACPTDVLEMIP 30 (81)
T ss_pred cCCChhHHHHHCCccchhhee
Confidence 699999999999999986543
No 463
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=87.51 E-value=0.15 Score=58.92 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=17.8
Q ss_pred ccccccccccccccccccccC
Q psy11935 872 LSELSGNVIDLCPVGALTSKP 892 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~k~ 892 (1334)
.|-.|..|+++||+|||....
T Consensus 186 ~Cg~C~~CldaCPt~Al~~~~ 206 (337)
T COG1600 186 HCGSCTRCLDACPTGALVAPY 206 (337)
T ss_pred cChhhHHHHhhCCcccccCCC
Confidence 478899999999999996554
No 464
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=87.48 E-value=0.24 Score=55.09 Aligned_cols=21 Identities=33% Similarity=0.513 Sum_probs=18.6
Q ss_pred ccccccccccccccccccccc
Q psy11935 871 FLSELSGNVIDLCPVGALTSK 891 (1334)
Q Consensus 871 ~~~~~cg~cv~~CpvGAl~~k 891 (1334)
..|..||.|+..||+||++.-
T Consensus 193 ~kc~~c~~cv~~cp~~Ai~~~ 213 (354)
T COG2768 193 EKCYDCGLCVKICPVGAITLT 213 (354)
T ss_pred ecccccchhhhhCCCcceecc
Confidence 469999999999999999765
No 465
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=87.42 E-value=0.33 Score=56.64 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=15.0
Q ss_pred ccccccccccccccccc
Q psy11935 871 FLSELSGNVIDLCPVGA 887 (1334)
Q Consensus 871 ~~~~~cg~cv~~CpvGA 887 (1334)
..|+.||+|+++||+|-
T Consensus 307 ~~CvgCGrC~~~CP~~I 323 (344)
T PRK15055 307 HMCVGCGRCDDRCPEYI 323 (344)
T ss_pred hhCcCcCccccccCCCC
Confidence 35999999999999974
No 466
>KOG2991|consensus
Probab=87.32 E-value=50 Score=36.17 Aligned_cols=30 Identities=20% Similarity=0.169 Sum_probs=15.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy11935 56 FYQTQLNNNQKAQDEIQTLLAKSASIKTEL 85 (1334)
Q Consensus 56 r~~~~~~~~~~l~~~i~~l~~~~~~~~~~l 85 (1334)
|+-+.+++.+++..+|..++...+|....+
T Consensus 137 rlA~kEQEmqe~~sqi~~lK~qq~Ps~~ql 166 (330)
T KOG2991|consen 137 RLATKEQEMQECTSQIQYLKQQQQPSVAQL 166 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCcHHHHH
Confidence 344444555555555555555555544443
No 467
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=87.29 E-value=0.27 Score=66.82 Aligned_cols=21 Identities=19% Similarity=0.195 Sum_probs=18.6
Q ss_pred ccccccccccccccccccccc
Q psy11935 871 FLSELSGNVIDLCPVGALTSK 891 (1334)
Q Consensus 871 ~~~~~cg~cv~~CpvGAl~~k 891 (1334)
-.|+.||.|+.+||++||...
T Consensus 683 ~~Ci~Cg~C~~vCP~~ai~~~ 703 (1165)
T TIGR02176 683 DNCIQCNQCAFVCPHAAIRPK 703 (1165)
T ss_pred ccCCCccchHHhcChhhcccc
Confidence 369999999999999999754
No 468
>PRK13409 putative ATPase RIL; Provisional
Probab=87.22 E-value=0.26 Score=62.64 Aligned_cols=55 Identities=20% Similarity=0.222 Sum_probs=35.4
Q ss_pred ccccccccccccccccccccCCcccCCCCcceeeeeecccCC---CCCceEEEeeCCEEEEecCC
Q psy11935 872 LSELSGNVIDLCPVGALTSKPYSFTARPWETRKTESVDVLDA---VGSNIIVSTRTGEVLRVLPR 933 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~k~~~~~~r~we~~~~~s~c~~C~---~gC~i~v~v~~g~v~ri~p~ 933 (1334)
-|+.||-||.-||.+|| ...+-|-++..-.+. .+.. .--++. .++.|+++.+.|.
T Consensus 50 ~c~~c~~c~~~cp~~a~-----~i~~~p~~~~~~~~~-~yg~~~~~L~~l~-~i~~Gev~gLvG~ 107 (590)
T PRK13409 50 LCIGCGICVKKCPFDAI-----SIVNLPEELEEEPVH-RYGVNGFKLYGLP-IPKEGKVTGILGP 107 (590)
T ss_pred hccccccccccCCcceE-----EEeeCchhhccCceE-EecCCceeEecCC-cCCCCCEEEEECC
Confidence 49999999999999999 445556665543221 1111 123444 5678888887763
No 469
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=87.12 E-value=0.18 Score=63.93 Aligned_cols=16 Identities=19% Similarity=0.326 Sum_probs=14.7
Q ss_pred cccccccccccccccc
Q psy11935 872 LSELSGNVIDLCPVGA 887 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGA 887 (1334)
.|..||+|+++||.|.
T Consensus 438 ~C~~CG~C~evCP~gI 453 (784)
T TIGR00314 438 QCYACGRCEQACPKNI 453 (784)
T ss_pred hhhhhhHHhccCCCCC
Confidence 6999999999999984
No 470
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=87.09 E-value=0.16 Score=64.50 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=14.6
Q ss_pred ccccccccccccccccc
Q psy11935 871 FLSELSGNVIDLCPVGA 887 (1334)
Q Consensus 871 ~~~~~cg~cv~~CpvGA 887 (1334)
..|..||+|..+||+|.
T Consensus 442 ~~Ct~CG~CeeVCPtgI 458 (781)
T PRK00941 442 DKCIGCGRCEQVCPKNI 458 (781)
T ss_pred hhccchhHHhhhCCCCC
Confidence 46999999999999875
No 471
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=87.04 E-value=49 Score=41.39 Aligned_cols=8 Identities=0% Similarity=-0.055 Sum_probs=4.3
Q ss_pred eechhhhh
Q psy11935 307 STHMNIVE 314 (1334)
Q Consensus 307 FLPl~~Ik 314 (1334)
-||=|-+|
T Consensus 209 ~lp~d~~k 216 (514)
T TIGR03319 209 NLPNDEMK 216 (514)
T ss_pred EcCChhhh
Confidence 45555555
No 472
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=86.93 E-value=0.23 Score=65.69 Aligned_cols=77 Identities=14% Similarity=0.154 Sum_probs=42.7
Q ss_pred ccccc----cccccccccccccccC-CcccCCCCcceeeeeecccC---CCCCceEEEeeCCEE--EEecCCCCCCCCcc
Q psy11935 872 LSELS----GNVIDLCPVGALTSKP-YSFTARPWETRKTESVDVLD---AVGSNIIVSTRTGEV--LRVLPRLNEDINEE 941 (1334)
Q Consensus 872 ~~~~c----g~cv~~CpvGAl~~k~-~~~~~r~we~~~~~s~c~~C---~~gC~i~v~v~~g~v--~ri~p~~~~~vn~g 941 (1334)
.|..| |.|+++||++|+.+-. ..|.. ..+.-.+...|..| ..-|+....-...++ ..-+-+-....|.|
T Consensus 887 rC~~C~~~C~~C~~vCP~~A~~~i~~~g~~~-~~~~~~~~~~C~~CG~C~~~CP~~~~py~dk~t~f~~~~d~~~s~n~g 965 (1019)
T PRK09853 887 RCLECNYVCEKCVDVCPNRANVSIAVPGFQN-RFQIVHLDAMCNECGNCAQFCPWNGKPYKDKITLFSLEEDFENSTNPG 965 (1019)
T ss_pred ccCCcccccchhhhhCCcccccccccCCccc-CCceEEcCccCccccchhhhCCCCCCcccccceEEcchhhhhcCcCCC
Confidence 56666 9999999999954433 11111 12233345555554 456777544443333 22333445567888
Q ss_pred cccccccc
Q psy11935 942 WLADKGRF 949 (1334)
Q Consensus 942 ~lC~kgr~ 949 (1334)
|+...|+.
T Consensus 966 f~~~~~~~ 973 (1019)
T PRK09853 966 FLVEDGRV 973 (1019)
T ss_pred eEEeCCcE
Confidence 87664443
No 473
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=86.90 E-value=0.47 Score=55.74 Aligned_cols=46 Identities=13% Similarity=0.050 Sum_probs=27.1
Q ss_pred cccccccccccccccccccCCcccCCCCcceeeeeeccc---CCCCCceEEE
Q psy11935 873 SELSGNVIDLCPVGALTSKPYSFTARPWETRKTESVDVL---DAVGSNIIVS 921 (1334)
Q Consensus 873 ~~~cg~cv~~CpvGAl~~k~~~~~~r~we~~~~~s~c~~---C~~gC~i~v~ 921 (1334)
|..||.|+++||++||+-..-.-..+ ...-+..|.. |...|+..+.
T Consensus 183 ~c~~~~Cv~~CP~~Ai~~~~~~~~~~---~~id~~~Ci~Cg~Ci~~CP~~a~ 231 (341)
T TIGR02066 183 VCEIPSVVAACPTGALKPRRDGKNKS---LEVDVEKCIYCGNCYTMCPAMPI 231 (341)
T ss_pred hcCCCceEeeCchhhceecccCCCCc---eeeccccCCcCCchHHhCchhhc
Confidence 45679999999999997632111111 1233444554 4457876544
No 474
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=86.79 E-value=34 Score=38.57 Aligned_cols=45 Identities=9% Similarity=0.031 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy11935 8 QTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE 52 (1334)
Q Consensus 8 ~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~ 52 (1334)
.....+........+.+.+...++.+.+..++..+..+++.++..
T Consensus 27 ~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~ 71 (251)
T PF11932_consen 27 QQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVY 71 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444555555555555555554444444433
No 475
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=86.72 E-value=0.38 Score=62.08 Aligned_cols=20 Identities=15% Similarity=0.150 Sum_probs=17.8
Q ss_pred cccccccccccccccccccc
Q psy11935 872 LSELSGNVIDLCPVGALTSK 891 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~k 891 (1334)
.|+.||.|+.+||+|||...
T Consensus 86 ~C~gC~~C~~~CP~~ai~~~ 105 (639)
T PRK12809 86 KCIGCKRCAIACPFGVVEMV 105 (639)
T ss_pred hCcchhhHhhhcCCCCEEcc
Confidence 59999999999999999544
No 476
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=86.69 E-value=0.32 Score=54.45 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=15.8
Q ss_pred cccccccccccccccccc
Q psy11935 870 LFLSELSGNVIDLCPVGA 887 (1334)
Q Consensus 870 ~~~~~~cg~cv~~CpvGA 887 (1334)
.+.|..||.|+.+||.|.
T Consensus 211 v~~C~~Cg~Cs~VCPk~I 228 (250)
T PRK07570 211 FGNCTNTGECEAVCPKGI 228 (250)
T ss_pred cccCcccCccccccCCCC
Confidence 346999999999999986
No 477
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=86.61 E-value=0.17 Score=60.53 Aligned_cols=53 Identities=15% Similarity=0.352 Sum_probs=30.6
Q ss_pred CCCcccccCCccchhhhh-cccCccccccCCCCCceeccccccccccccccccccccccc
Q psy11935 828 LDCPICDQGGECDLQDQS-MAFGNDLGTTGRGSDMQVGTYVEKLFLSELSGNVIDLCPVG 886 (1334)
Q Consensus 828 ~~C~~C~~~g~c~~~~~e-~~g~~~~~~~~rg~~~~i~~~~~~~~~~~~cg~cv~~CpvG 886 (1334)
-.|+.| |.|.+.|-+ .--..++.+...|...... +..-.|+.||+|-++||.+
T Consensus 400 ~kc~~c---G~C~~~CP~~l~i~eam~~A~~Gd~~~l~---~l~d~C~~C~rCEq~Cpk~ 453 (772)
T COG1152 400 RKCTYC---GNCMRACPNELDIPEAMEYAAKGDFSKLE---DLHDVCIGCGRCEQVCPKN 453 (772)
T ss_pred Hhcccc---cchhccCCcccchHHHHHHhhcCChHHHH---HHHHHhhhhhhhhhhCccc
Confidence 356666 999999943 2222233333333322111 1122599999999999864
No 478
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=86.61 E-value=0.24 Score=46.36 Aligned_cols=20 Identities=25% Similarity=0.255 Sum_probs=18.0
Q ss_pred cccccccccccccccccccc
Q psy11935 872 LSELSGNVIDLCPVGALTSK 891 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~k 891 (1334)
.|+.||.|+.+||++||...
T Consensus 22 ~Ci~C~~Cv~~CP~~~i~~~ 41 (91)
T TIGR02936 22 KCIGCGRCYKVCGRDVLTLK 41 (91)
T ss_pred HCCCcchHHHHcChhhceee
Confidence 58999999999999999654
No 479
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=86.52 E-value=0.3 Score=57.81 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=19.7
Q ss_pred cccccccccccccccccccccccCC
Q psy11935 869 KLFLSELSGNVIDLCPVGALTSKPY 893 (1334)
Q Consensus 869 ~~~~~~~cg~cv~~CpvGAl~~k~~ 893 (1334)
.+..|-.||-|..+||.||+.-+.|
T Consensus 585 ~~~~C~gCG~C~~aCp~gai~~~~f 609 (622)
T COG1148 585 NPLRCKGCGICSAACPSGAIDLAGF 609 (622)
T ss_pred ChhhhCcccchhhhCCcccchhccc
Confidence 3567888999999999999866655
No 480
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=86.46 E-value=17 Score=35.30 Aligned_cols=42 Identities=7% Similarity=0.108 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy11935 11 LAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE 52 (1334)
Q Consensus 11 ~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~ 52 (1334)
+...-..++.++.++..+..++..+..++.+...-++.+++-
T Consensus 5 ~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l 46 (110)
T TIGR02338 5 VQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERL 46 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344555666777777777777777777777755555555443
No 481
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=86.44 E-value=0.3 Score=62.33 Aligned_cols=17 Identities=29% Similarity=0.618 Sum_probs=15.3
Q ss_pred ccccccccccccccccc
Q psy11935 872 LSELSGNVIDLCPVGAL 888 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl 888 (1334)
.|+.||.|+++||++||
T Consensus 579 ~C~~Cg~C~~~CP~~Ai 595 (595)
T TIGR03336 579 LCTGCGVCAQICPFDAI 595 (595)
T ss_pred CCcCHHHHHhhCccccC
Confidence 49999999999999986
No 482
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=86.33 E-value=0.15 Score=64.77 Aligned_cols=19 Identities=16% Similarity=0.100 Sum_probs=15.5
Q ss_pred ccccccccccccccccccc
Q psy11935 870 LFLSELSGNVIDLCPVGAL 888 (1334)
Q Consensus 870 ~~~~~~cg~cv~~CpvGAl 888 (1334)
...|..||+|+++||+|+=
T Consensus 402 ~~~Ct~CG~C~evCP~gIp 420 (731)
T cd01916 402 FDQCVGCGRCEQECPKEIP 420 (731)
T ss_pred HhhhhhhhHHhhhCCCCCC
Confidence 3468999999999999873
No 483
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=86.32 E-value=58 Score=35.93 Aligned_cols=166 Identities=13% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh---------------HHHHHHHHHhhhHHHHHHH
Q psy11935 7 IQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE---------------LREFYQTQLNNNQKAQDEI 71 (1334)
Q Consensus 7 ~~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~---------------~~er~~~~~~~~~~l~~~i 71 (1334)
++.-+.+++..+.+.+..+.........++.++.++...++.++.+ .-++..........++.++
T Consensus 29 l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~ 108 (219)
T TIGR02977 29 IRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALEREL 108 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHH--
Q psy11935 72 QTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQISENEFKQKEKTI-- 149 (1334)
Q Consensus 72 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~i~~~~~~~ie~~~~~~~l~n~~~~-- 149 (1334)
..+...++.++..+..+ +.++.. .+.+...+................-......+....+-....++...+..-..
T Consensus 109 ~~~~~~v~~l~~~l~~L-~~ki~~-~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~~ea~aea~~ 186 (219)
T TIGR02977 109 AAVEETLAKLQEDIAKL-QAKLAE-ARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDELEAQAESYD 186 (219)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred ------HHHHHHHhhhhhcchhhhhHHHHHHHHH
Q psy11935 150 ------VENAAKQLKQISEKPGATKLMLDFKAKC 177 (1334)
Q Consensus 150 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~l 177 (1334)
+...+. .+. .....+.++..+++.+
T Consensus 187 ~~~~~~l~~~l~--~l~-~~~~vd~eLa~LK~~~ 217 (219)
T TIGR02977 187 LGRKPSLEDEFA--ELE-ADDEIERELAALKAKM 217 (219)
T ss_pred ccCCCCHHHHHH--Hhc-CCChHHHHHHHHHhhh
No 484
>KOG4807|consensus
Probab=86.28 E-value=72 Score=36.97 Aligned_cols=202 Identities=12% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhh--------------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11935 29 LNNNQKAQDEIQTLLAKSASIKTE--------------LREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQLN 94 (1334)
Q Consensus 29 ~~~~~~lq~~i~~l~~~ie~l~~~--------------~~er~~~~~~~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~ 94 (1334)
++++..|+++|...-+.++++--. .-++..--..-.+-|+++++.+..+++....+.+.. +..+.
T Consensus 244 Edq~~~LsE~~~k~~q~Le~~~~~~~~~~P~t~~~~~~~~e~~~~~sD~~~~L~k~vQ~L~AQle~~R~q~e~~-q~~~~ 322 (593)
T KOG4807|consen 244 EDQQNRLSEEIEKKWQELEKLPLRENKRVPLTALLNQSRGERRGPPSDGHEALEKEVQALRAQLEAWRLQGEAP-QSALR 322 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcCCCCccccCCCccccccCCCCcchHHHHHHHHHHHHHHHHHHHhccCc-hhhHh
Q ss_pred HHHHH--------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHhhhhhc
Q psy11935 95 NNVKE--------KLKEFQTQLDSAELTLHREF----QQKEKTIVENAAKQLKQISENEFKQKEKTIVENAAKQLKQISE 162 (1334)
Q Consensus 95 ~~~~~--------~~~~~~~~l~~~~~~l~~~~----~~~~~~i~~~~~~~ie~~~~~~~l~n~~~~~~~~~~~~~~~~~ 162 (1334)
. ... .....+.-+...++...... .+-+.+++.++.+.--++.+.+ -..+..++...+ ..
T Consensus 323 s-~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqHqRELekLreEKdrLLAEET--AATiSAIEAMKn-----Ah 394 (593)
T KOG4807|consen 323 S-QEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQHQRELEKLREEKDRLLAEET--AATISAIEAMKN-----AH 394 (593)
T ss_pred h-hhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--hhhhHHHHHHHH-----HH
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy11935 163 KPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQAIHMITSDVTH 240 (1334)
Q Consensus 163 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr 240 (1334)
.+++..++.+-++--...+.--.+..++++..+.+++.+..++...=-+...+...++.. +..+++-.++-+.+.++
T Consensus 395 rEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEae-rqaLRqCQrEnQELnaH 471 (593)
T KOG4807|consen 395 REEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAE-RQALRQCQRENQELNAH 471 (593)
T ss_pred HHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHH
No 485
>KOG3256|consensus
Probab=86.22 E-value=0.36 Score=48.40 Aligned_cols=74 Identities=9% Similarity=-0.083 Sum_probs=0.0
Q ss_pred cCccccccCCCCCceeccccccccccccccccccccccccccccCC---cccCCCCcceeeeeecccCCC---CCceEEE
Q psy11935 848 FGNDLGTTGRGSDMQVGTYVEKLFLSELSGNVIDLCPVGALTSKPY---SFTARPWETRKTESVDVLDAV---GSNIIVS 921 (1334)
Q Consensus 848 g~~~~~~~~rg~~~~i~~~~~~~~~~~~cg~cv~~CpvGAl~~k~~---~~~~r~we~~~~~s~c~~C~~---gC~i~v~ 921 (1334)
|.-.-+|.|-..-..+.+-.+ .|+-|--|+.|||..|+|-.-. +.+.|.-....--+.|.+||. .|++..-
T Consensus 91 gplS~RFRGehalrRyp~gee---rCIACklCeavCPaqaitieae~r~dgsrRttrYdIDmtkCIyCG~CqEaCPvdai 167 (212)
T KOG3256|consen 91 GPLSPRFRGEHALRRYPSGEE---RCIACKLCEAVCPAQAITIEAEERTDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 167 (212)
T ss_pred CCCCcccccchhhhcCCCcch---hhhhHHHHHHhCCcccceeeceecCCccccceeecccceeeeeecchhhhCCccce
Q ss_pred eeC
Q psy11935 922 TRT 924 (1334)
Q Consensus 922 v~~ 924 (1334)
|.+
T Consensus 168 veg 170 (212)
T KOG3256|consen 168 VEG 170 (212)
T ss_pred ecc
No 486
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=86.22 E-value=0.42 Score=49.42 Aligned_cols=89 Identities=12% Similarity=0.110 Sum_probs=0.0
Q ss_pred EEcCCHHHHHHHHHHHHHHhhCCCCCCcccccCCccchhhhhcccCccccccCCCCCceecccc-ccccccccccc--cc
Q psy11935 804 VKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGNDLGTTGRGSDMQVGTYV-EKLFLSELSGN--VI 880 (1334)
Q Consensus 804 i~t~s~~~r~~r~~~~~~ll~~h~~~C~~C~~~g~c~~~~~e~~g~~~~~~~~rg~~~~i~~~~-~~~~~~~~cg~--cv 880 (1334)
|.. ...+| +.|..| +..|....+.....-.....-+.+.... ..++.|-.|-. |.
T Consensus 5 i~~--~~~~C--------------igC~~C------e~aC~~ah~~~~~~~~~~pri~v~~~d~~~~pv~C~qCedaPC~ 62 (165)
T COG1142 5 IIA--DPEKC--------------IGCRTC------EVACVVAHEEIQSQSIFLPRIMVIKNDGESAPVVCHHCEDAPCA 62 (165)
T ss_pred EEe--CcccC--------------CCcccc------HHHHHHhccccccCccCCCceEEEccCCcccCCcCCCCCCcchh
Q ss_pred cccccccccccCCcccCCCCcceeeeeecccCCCCCce
Q psy11935 881 DLCPVGALTSKPYSFTARPWETRKTESVDVLDAVGSNI 918 (1334)
Q Consensus 881 ~~CpvGAl~~k~~~~~~r~we~~~~~s~c~~C~~gC~i 918 (1334)
.+||||||+.. ..-++-....=--|..|..-|++
T Consensus 63 ~vCP~~AI~~~----~~~v~V~~ekCiGC~~C~~aCPf 96 (165)
T COG1142 63 EVCPVGAITRD----DGAVQVDEEKCIGCKLCVVACPF 96 (165)
T ss_pred hhCchhheeec----CCceEEchhhccCcchhhhcCCc
No 487
>PRK12704 phosphodiesterase; Provisional
Probab=86.11 E-value=1e+02 Score=38.66 Aligned_cols=164 Identities=10% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 8 QTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTELRE 87 (1334)
Q Consensus 8 ~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~~~er~~~~~~~~~~l~~~i~~l~~~~~~~~~~l~~ 87 (1334)
+..+.+.+.+.+.+. -+...+..+..++...+..+++.+.+.+++..+....+++.+.++++..-.+.++.-.+.+..
T Consensus 30 ~~~l~~Ae~eAe~I~--keA~~eAke~~ke~~leaeeE~~~~R~Ele~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lek 107 (520)
T PRK12704 30 EAKIKEAEEEAKRIL--EEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEK 107 (520)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHhhhhhcchhhh
Q psy11935 88 FYQTQLNNNVKEKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQISENEFKQKEKTIVENAAKQLKQISEKPGAT 167 (1334)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~i~~~~~~~ie~~~~~~~l~n~~~~~~~~~~~~~~~~~~~~~~ 167 (1334)
. +..+.. .+..+...++++++.+.++.........+++...+--.+...+..--+-+...-..... ....-.++.+
T Consensus 108 k-e~eL~~-re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~ea~~~l~~~~~~~~~~~~~~--~~~~~~~~~~ 183 (520)
T PRK12704 108 R-EEELEK-KEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARHEAAV--LIKEIEEEAK 183 (520)
T ss_pred H-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q ss_pred hHHHHHHHHH
Q psy11935 168 KLMLDFKAKC 177 (1334)
Q Consensus 168 ~~~~~~~~~l 177 (1334)
.+.++.-..+
T Consensus 184 ~~a~~~a~~i 193 (520)
T PRK12704 184 EEADKKAKEI 193 (520)
T ss_pred HHHHHHHHHH
No 488
>PRK10884 SH3 domain-containing protein; Provisional
Probab=85.99 E-value=10 Score=41.16 Aligned_cols=80 Identities=14% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy11935 28 QLNNNQKAQDEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQ 107 (1334)
Q Consensus 28 l~~~~~~lq~~i~~l~~~ie~l~~~~~er~~~~~~~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 107 (1334)
...++..++.++.+++.++..+.+...++...+.+..+...+.+.+++++.+.+.+++..+ +.++.. ++.+....+..
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~-~~~~~~-l~~~~~~~~~~ 168 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVA-QKKVDA-ANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHH
Q ss_pred HH
Q psy11935 108 LD 109 (1334)
Q Consensus 108 l~ 109 (1334)
..
T Consensus 169 ~~ 170 (206)
T PRK10884 169 II 170 (206)
T ss_pred HH
No 489
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=85.90 E-value=0.28 Score=51.31 Aligned_cols=84 Identities=14% Similarity=0.090 Sum_probs=0.0
Q ss_pred CcEEEcCCHHHHHHHHHHHHHHhhCCCCCCcccccCCccchhhhhcccCccccccCCCCCceeccc-------------c
Q psy11935 801 GWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGNDLGTTGRGSDMQVGTY-------------V 867 (1334)
Q Consensus 801 gm~i~t~s~~~r~~r~~~~~~ll~~h~~~C~~C~~~g~c~~~~~e~~g~~~~~~~~rg~~~~i~~~-------------~ 867 (1334)
+|.|.. .+| +.|..| +..|........-....|-.....+.. .
T Consensus 3 ~~~~d~----~~C--------------~gC~~C------~~aC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (161)
T TIGR02951 3 GFYVDQ----TRC--------------SGCKTC------QIACKDKNDLEVGVLFRRVYEYEGGGWTEEGEGFHPDVFAY 58 (161)
T ss_pred EEEEEc----ccC--------------cCchHH------HHHHHHHcCCCCCCceEEEEEecCCccccccccCCCCceEE
Q ss_pred cccccccccc--ccccccccccccccCCcccCCCCcceeeeeecccCC
Q psy11935 868 EKLFLSELSG--NVIDLCPVGALTSKPYSFTARPWETRKTESVDVLDA 913 (1334)
Q Consensus 868 ~~~~~~~~cg--~cv~~CpvGAl~~k~~~~~~r~we~~~~~s~c~~C~ 913 (1334)
..+..|..|+ .|+.+||+||| ......+.+......|..|+
T Consensus 59 ~~~~~C~~C~~~~C~~~CP~~ai-----~~~~~~~~~~i~~~~C~~C~ 101 (161)
T TIGR02951 59 YISISCNHCADPACVKNCPTGAM-----YKREEDGLVLVDQDKCIGCR 101 (161)
T ss_pred EcCccCCCcCCcchHHhCCCCCE-----EeecCCCcEEECHHhCCCch
No 490
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=85.81 E-value=98 Score=38.33 Aligned_cols=213 Identities=10% Similarity=0.023 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhh-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHH
Q psy11935 28 QLNNNQKAQDEIQTLLAKSASIKTE-LREFYQTQLNNNQKAQDEIQTLLAKSASIK-TELREFYQTQLNNNVKEKLKEFQ 105 (1334)
Q Consensus 28 l~~~~~~lq~~i~~l~~~ie~l~~~-~~er~~~~~~~~~~l~~~i~~l~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~ 105 (1334)
.+.-.........+.....-+-... +.+++..+..+....+........+..-.. .....+-...... ++..+...+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lr~~~~~ae~~~~~~~~~~~l~~~~~~~~~~~~~~~~-ln~ql~~~~ 252 (458)
T COG3206 174 ANALAQAYLADQLEAQLEAFRRASDSLDERLEELRARLQEAEAQVEDFRAQHGLTDAARGQLLSEQQLSA-LNTQLQSAR 252 (458)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHH-HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHhhhhhcchhhhhHHHHHHHHHHHHHHHHH
Q psy11935 106 TQLDSAELTLHREFQQKEKTIVENAAKQLKQISENEFKQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENK 185 (1334)
Q Consensus 106 ~~l~~~~~~l~~~~~~~~~~i~~~~~~~ie~~~~~~~l~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 185 (1334)
......+..+.......................-+..++.+...+...+. .+..+......+...+++++..++..+.
T Consensus 253 ~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~s~~i~~Lr~~~~~~~~~~~--~l~~~~~~~~p~~~~~~~q~~~~~~~~~ 330 (458)
T COG3206 253 ARLAQAEARLASLLQLLPLGREAAALREVLESPTIQDLRQQYAQVRQQIA--DLSTELGAKHPQLVALEAQLAELRQQIA 330 (458)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhhhHHhccHHHHHHHHHHHHHHHHHH--HHHHhhcccChHHHhHHHHHHHHHHHHH
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHh
Q psy11935 186 KLK-AELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQAIHMITSDVTHLHTSKESL 248 (1334)
Q Consensus 186 ~~~-~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~srl~~Vk~vL 248 (1334)
..- .-+......++.++.+.+.+.+.+..++..+..+ .....++.++...++..++++
T Consensus 331 ~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~-----~~~~~~l~~L~Re~~~~r~~y 389 (458)
T COG3206 331 AELRQILASLPNELALLEQQEAALEKELAQLKGRLSKL-----PKLQVQLRELEREAEAARSLY 389 (458)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhc-----hHhhhHHHHHHHHHHHHHHHH
No 491
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=85.81 E-value=6 Score=41.98 Aligned_cols=83 Identities=12% Similarity=0.099 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh---HHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy11935 3 AQDEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE---LREFYQTQLNNNQKAQDEIQTLLAKSA 79 (1334)
Q Consensus 3 ~l~~~~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~---~~er~~~~~~~~~~l~~~i~~l~~~~~ 79 (1334)
++..++....++..++++...+-.+|-+.++.++.++.+.+.++++++.+ +.|....+.....+|+.+..++...++
T Consensus 129 ~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~E 208 (290)
T COG4026 129 EYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVE 208 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccccc
Q ss_pred HHHHHH
Q psy11935 80 SIKTEL 85 (1334)
Q Consensus 80 ~~~~~l 85 (1334)
..+..+
T Consensus 209 l~e~~~ 214 (290)
T COG4026 209 LPEEEL 214 (290)
T ss_pred chHHHH
No 492
>KOG4438|consensus
Probab=85.76 E-value=84 Score=37.31 Aligned_cols=229 Identities=16% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHhHhhh-------HHHHHH
Q psy11935 8 QTLLAKSASIKTELREFYQTQLNNNQKAQDEIQT----------------------LLAKSASIKTE-------LREFYQ 58 (1334)
Q Consensus 8 ~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~----------------------l~~~ie~l~~~-------~~er~~ 58 (1334)
+..+..++...+++..++.+...+...+..++.+ +++....++++ +++.+.
T Consensus 172 ~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l~al~llv~tLee~~~~LktqIV~sPeKL~~~le 251 (446)
T KOG4438|consen 172 EEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKILNALKLLVVTLEENANCLKTQIVQSPEKLKEALE 251 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHH--HHHHHHHHHHHHHH
Q psy11935 59 TQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQL---DSAELTLHREF--QQKEKTIVENAAKQ 133 (1334)
Q Consensus 59 ~~~~~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~l~~~~--~~~~~~i~~~~~~~ 133 (1334)
..+-.+...+....++.++-..+.+.+.-+ +.-..+ +..-++.+.... +..+.....+. ..++..++....++
T Consensus 252 emk~~l~k~k~~~~~l~~K~~iL~ekv~~~-qti~~e-~~~~lk~i~~~~~e~d~~Et~~v~lke~~~Le~q~e~~~~e~ 329 (446)
T KOG4438|consen 252 EMKDLLQKEKSAMVELQEKAKILEEKVTNL-QTIEKE-LKALLKKISSDGVEYDSLETKVVELKEILELEDQIELNQLEL 329 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHH-HHHHHH-HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH---HHhHhhhhhHHHHHHHHHHhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 134 LKQI---SENEFKQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESK 210 (1334)
Q Consensus 134 ie~~---~~~~~l~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~ 210 (1334)
-... +-...+.+.+.......++ ...+..+...+..+...+..+....+.+..-..+++..+.++..+.-+ ....
T Consensus 330 ~~lk~~e~~~kqL~~~~kek~~~~Qd-~~~r~~E~v~~~md~~~~~~n~V~~kr~a~~~kie~~~~~ik~~e~~l-~~~~ 407 (446)
T KOG4438|consen 330 EKLKMFENLTKQLNELKKEKESRRQD-LENRKTESVKAMMDDNIEKYNVVRQKRNAKVKKIEEKNEEIKKIELFL-EIAR 407 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHHHHHhhh-HHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy11935 211 KRELMAKKVESVMQSQLQQAIHMITSDVTHL 241 (1334)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~srl 241 (1334)
...++....... +-.+-.+...+....+.+
T Consensus 408 ~r~e~~~~i~aI-~l~~~llk~HV~~y~AEl 437 (446)
T KOG4438|consen 408 GREELESQIVAI-TLECILLKMHVELYEAEL 437 (446)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
No 493
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=85.73 E-value=0.32 Score=57.24 Aligned_cols=72 Identities=18% Similarity=0.043 Sum_probs=0.0
Q ss_pred CcEEEcCCHHHHHHHHHHHHHHhhCCCCCCcccccCCccc--hhhhhcccCccccccCCCCCceeccccccccccccccc
Q psy11935 801 GWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECD--LQDQSMAFGNDLGTTGRGSDMQVGTYVEKLFLSELSGN 878 (1334)
Q Consensus 801 gm~i~t~s~~~r~~r~~~~~~ll~~h~~~C~~C~~~g~c~--~~~~e~~g~~~~~~~~rg~~~~i~~~~~~~~~~~~cg~ 878 (1334)
.+.+.. +..+| +.|..| . ..| ..........-....|+.||.
T Consensus 294 ~~~p~i--d~dkC--------------i~Cg~C------~~~~aC--------------Pt~AI~~~~~Id~~~Ci~CGa 337 (391)
T TIGR03287 294 DVRPKY--NPERC--------------ENCDPC------LVEEAC--------------PVPAIKKDGTLNTEDCFGCGY 337 (391)
T ss_pred ceeEEE--chhhC--------------cCCCCC------cCCcCC--------------CHhhEeccceeChHhCcChHH
Q ss_pred cccccccccccccCCcccCCCCcceeeeeeccc
Q psy11935 879 VIDLCPVGALTSKPYSFTARPWETRKTESVDVL 911 (1334)
Q Consensus 879 cv~~CpvGAl~~k~~~~~~r~we~~~~~s~c~~ 911 (1334)
|+++||.+|+.-..-.+.... ..++-+|.+
T Consensus 338 CV~aCP~~AI~~~~~~itvee---~~ipit~Rq 367 (391)
T TIGR03287 338 CAEICPGGAFEVNLGSVRVEG---RKIPITCRQ 367 (391)
T ss_pred HHhhCCccceEEeCCeEeecc---ccccEEecc
No 494
>COG5293 Predicted ATPase [General function prediction only]
Probab=85.72 E-value=86 Score=37.38 Aligned_cols=232 Identities=8% Similarity=-0.021 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh--HHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy11935 3 AQDEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE--LREFYQTQLNNNQKAQDEIQTLLAKSAS 80 (1334)
Q Consensus 3 ~l~~~~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~--~~er~~~~~~~~~~l~~~i~~l~~~~~~ 80 (1334)
.+..+..+++.++.+....+.-...--..+..+.+....-.+.-.++..+ .-....+-.++...+++++..+++++.+
T Consensus 194 ~~~~~~dKi~~l~s~kKl~e~~~~~~ig~L~slee~e~~e~~~~~~v~~k~~tln~f~~~a~~y~e~ee~vn~v~~~I~e 273 (591)
T COG5293 194 CAAEYYDKIQELESKKKLAELLRKTWIGSLDSLEEIETTELRKQDEVNKKQATLNTFDFHAQDYAETEELVNTVDERIAE 273 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHhhhh
Q psy11935 81 IKTELREFYQTQLNNNVKEKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQISENEFKQKEKTIVENAAKQLKQI 160 (1334)
Q Consensus 81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~i~~~~~~~ie~~~~~~~l~n~~~~~~~~~~~~~~~ 160 (1334)
+..+---. +...+-+-.+...+.....++.+.-..+..-....++...-++.+.-..... .+.-.++...+. +++
T Consensus 274 ~~n~~i~~-q~~~~~~~~slk~~~~~~pd~i~~~ye~vg~~fpg~Vkk~~e~v~~F~r~~~--e~R~~yl~~ei~--~i~ 348 (591)
T COG5293 274 LNNRRISM-QSHWKRVKTSLKEQILFCPDEIQVLYEEVGVLFPGQVKKDFEHVIAFNRAIT--EERHDYLQEEIA--EIE 348 (591)
T ss_pred HhhhhhHH-HHHHHHHhhcchhhccCChHHHHHHHHHhhhcChHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHH--HHH
Q ss_pred hcchhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy11935 161 SEKPGATKLMLDFKAKCEVYEAENKKLK--AELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQAIHMITSDV 238 (1334)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~--~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (1334)
..+.+....++.+.+++++.-+-+..-. +++..+.+++..+..++.++..+++.+.+....- +.+..+..++-...
T Consensus 349 ~dLk~~n~~~~~l~~~rae~l~~Lk~~g~~e~y~~l~ee~~~~~~elae~~~rie~l~k~~~~~--~~i~~lkhe~l~~~ 426 (591)
T COG5293 349 GDLKEVNAELDDLGKRRAEGLAFLKNRGVFEKYQTLCEEIIALRGELAELEYRIEPLRKLHALD--QYIGTLKHECLDLE 426 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHH--HHHHHHHHHHHHHH
Q ss_pred hhh
Q psy11935 239 THL 241 (1334)
Q Consensus 239 srl 241 (1334)
+|.
T Consensus 427 ~r~ 429 (591)
T COG5293 427 ERI 429 (591)
T ss_pred HHh
No 495
>PRK09343 prefoldin subunit beta; Provisional
Probab=85.62 E-value=23 Score=35.07 Aligned_cols=90 Identities=11% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh------------------HHHHHHHHHhhhHHH
Q psy11935 6 EIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE------------------LREFYQTQLNNNQKA 67 (1334)
Q Consensus 6 ~~~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~------------------~~er~~~~~~~~~~l 67 (1334)
.+..++...-.+++.++.++..+..+...+..++.+...-++.++.- ..+-+.+++.+++-+
T Consensus 4 ~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~i 83 (121)
T PRK09343 4 NIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELL 83 (121)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy11935 68 QDEIQTLLAKSASIKTELREFYQTQLNNNV 97 (1334)
Q Consensus 68 ~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~ 97 (1334)
+.+|+.++.+.+.++..+.+. +.++.+ +
T Consensus 84 e~~ik~lekq~~~l~~~l~e~-q~~l~~-l 111 (121)
T PRK09343 84 ELRSRTLEKQEKKLREKLKEL-QAKINE-M 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHH-H
No 496
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=85.57 E-value=25 Score=38.91 Aligned_cols=98 Identities=7% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh---HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy11935 9 TLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE---LREFYQTQLNNNQKAQDEIQTLLAKSASIKTEL 85 (1334)
Q Consensus 9 ~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~---~~er~~~~~~~~~~l~~~i~~l~~~~~~~~~~l 85 (1334)
.++......++.++.++-...+..+....-|.++.++++.|..+ .-|.+....+++..++.-|++...+........
T Consensus 4 ~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i 83 (230)
T PF10146_consen 4 KEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKI 83 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH-H
Q psy11935 86 REFYQTQLNNNVKEKLKEFQTQ-L 108 (1334)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~-l 108 (1334)
..+ ...+.. ++..+.++..+ +
T Consensus 84 ~r~-~eey~~-Lk~~in~~R~e~l 105 (230)
T PF10146_consen 84 QRL-YEEYKP-LKDEINELRKEYL 105 (230)
T ss_pred HHH-HHHHHH-HHHHHHHHHHHHc
No 497
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=85.55 E-value=0.39 Score=58.89 Aligned_cols=53 Identities=11% Similarity=0.181 Sum_probs=0.0
Q ss_pred CCCCcccccCCccchhhhhcccCccccccCCCCCceecccccccccccccccccccccccccccc
Q psy11935 827 PLDCPICDQGGECDLQDQSMAFGNDLGTTGRGSDMQVGTYVEKLFLSELSGNVIDLCPVGALTSK 891 (1334)
Q Consensus 827 ~~~C~~C~~~g~c~~~~~e~~g~~~~~~~~rg~~~~i~~~~~~~~~~~~cg~cv~~CpvGAl~~k 891 (1334)
+..|+.| ..|-...|..++-+..-.....|++.. |+.||.|+++||-.|+...
T Consensus 576 ~~~CtGC-------~~C~~~~~Cpsi~~~~~~~k~~id~~~-----C~GCg~C~~iCP~~a~~~~ 628 (640)
T COG4231 576 EEKCTGC-------GDCIVLSGCPSIEPDPTFKKARIDPSS-----CNGCGSCVEVCPSFAIKEG 628 (640)
T ss_pred hhhcCCc-------HHHHhhcCCceEeecCCCCceeecccc-----cccchhhhhcCchhheecc
No 498
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=85.50 E-value=26 Score=46.04 Aligned_cols=146 Identities=8% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhHHHHHHHHHHHHhhHHHHHh
Q psy11935 405 YTKTVRSVTLKISKEKIESLERNLQTETQRSRKLEEELQDTRQTCE------EVVRKEVSIVTVTLFLERLRSSHSKRSK 478 (1334)
Q Consensus 405 i~~L~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~------e~~~~~~~~~~l~~~~~~~~~~~~~~~~ 478 (1334)
+..+.+....+.+..+.....+.++=+++++.+++.+++..+.+++ .+.....+-..+-.++.+++.++..++.
T Consensus 246 lN~la~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~ 325 (726)
T PRK09841 246 LNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTF 325 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 479 NADSLVRLQKAQ-DEIQTLLAKSASIKTELREFYQTQLN-NNVKEKLKEFQTQLDSAELTLHREFQQKEKTIVE 550 (1334)
Q Consensus 479 e~~~l~~~~~~~-~~l~~l~~~~~~l~~~i~~~~~~~~~-~~l~~~l~~~~~~~a~le~~~~~~~~~~~~~~~~ 550 (1334)
+...+....... -....++.+++.++.+++.++.++.. -..+.++.+++-+....+..+..+.++.++.+-.
T Consensus 326 ~~~~l~~~~~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i~ 399 (726)
T PRK09841 326 REAEISQLYKKDHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSIS 399 (726)
T ss_pred HHHHHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=85.48 E-value=94 Score=37.57 Aligned_cols=214 Identities=10% Similarity=0.121 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHH------------------HHHHHHHHHHH
Q psy11935 2 KAQDEIQTLLAKSASIKTELRE-----------------FYQTQLNNNQKA------------------QDEIQTLLAKS 46 (1334)
Q Consensus 2 ~~l~~~~~~~~~~e~~~~~~~~-----------------~l~~l~~~~~~l------------------q~~i~~l~~~i 46 (1334)
..+..++.++.++..+++..+. ++..+.++++.+ .....++.+.+
T Consensus 94 ~kl~RL~~Ev~EL~eEl~~~~~~~~~~~~e~~~~~~l~~~~~~L~~~L~~l~l~~~lg~~~~~~~~~~~~~~~~kl~~~l 173 (388)
T PF04912_consen 94 QKLQRLRREVEELKEELEKRKADSKESDEEKISPEELAQQLEELSKQLDSLKLEELLGEETAQDLSDPQKALSKKLLSQL 173 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccCChhhHHHHHHHHHHHHHHhhcccccchhhhcccccchhhHHHHHHHhh
Q ss_pred HhH-------------------------hhh--HHHHHHHHHhhhHHHHHHHHH----------------HHHHHHHHHH
Q psy11935 47 ASI-------------------------KTE--LREFYQTQLNNNQKAQDEIQT----------------LLAKSASIKT 83 (1334)
Q Consensus 47 e~l-------------------------~~~--~~er~~~~~~~~~~l~~~i~~----------------l~~~~~~~~~ 83 (1334)
+.. ... .-.++-.+.+++..|+.-+-. +...+..+..
T Consensus 174 ~~~k~~~~~~~~~~~~~~ityel~~~p~~~~~~~la~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~ 253 (388)
T PF04912_consen 174 ESFKSSSGAGSSPANSDHITYELYYPPEQAKSQQLARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELER 253 (388)
T ss_pred hhcccccccCCCCCCCCceeeeeecCcccchhhHHHHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHhhhhh
Q psy11935 84 ELREFYQTQLNNNVKEKLKEFQTQLDSAELTLHREF--QQKEKTIVENAAKQLKQISENEFKQKEKTIVENAAKQLKQIS 161 (1334)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~--~~~~~~i~~~~~~~ie~~~~~~~l~n~~~~~~~~~~~~~~~~ 161 (1334)
++..+-...++. +..++..+..+++.+.+.-.... ...+.+| +++++.+.....+-..+=.+-.+++ .+.
T Consensus 254 ~lslL~~~~Ld~-i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI----~eLy~~l~~~~~~~~~lP~lv~RL~--tL~- 325 (388)
T PF04912_consen 254 QLSLLDPAKLDS-IERRLKSLLSELEELAEKRKEAKEDAEQESKI----DELYEILPRWDPYAPSLPSLVERLK--TLK- 325 (388)
T ss_pred HHHhcCHHHHHH-HHHHHHHHHHHHHHHHhccccccccccchhHH----HHHHHHHHHHHHHhhhhhHHHHHHH--HHH-
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 162 EKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQA 230 (1334)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (1334)
.+..+...+...+..++.....+...++.++.-|..++.. +.+.+...+..+..+ +.++..+
T Consensus 326 ---~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~---~~~N~~~i~~n~~~l-e~Ri~~L 387 (388)
T PF04912_consen 326 ---SLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEK---FKENMETIEKNVKKL-EERIAKL 387 (388)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-HHHHhcc
No 500
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=85.41 E-value=1.3e+02 Score=39.81 Aligned_cols=208 Identities=10% Similarity=0.040 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHhhHHHHHhh
Q psy11935 405 YTKTVRSVTLKISKEKIESLERNLQTETQRSRKLEEELQDTRQTCEEVVRKEVS-----IVTVTLFLERLRSSHSKRSKN 479 (1334)
Q Consensus 405 i~~L~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~e~~~~~~~-----~~~l~~~~~~~~~~~~~~~~e 479 (1334)
|..+.+++ ..++.--...-..++..-..+.++++++.-++.+...+..-... ++.|++++..+...+ +...
T Consensus 1105 I~~iTKrI--t~LEk~k~~~l~~ikK~ia~lnnlqqElklLRnEK~Rmh~~~dkVDFSDIEkLE~qLq~~~~kL--~dAy 1180 (1439)
T PF12252_consen 1105 ITDITKRI--TDLEKAKLDNLDSIKKAIANLNNLQQELKLLRNEKIRMHSGTDKVDFSDIEKLEKQLQVIHTKL--YDAY 1180 (1439)
T ss_pred HHHHHHHH--HHHhccccccHHHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCcccHHHHHHHHHHHHHhhhhh--HHHH
Q ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhh-----------------HHHHHHHHHHHHHHHHHHHHH
Q psy11935 480 ADSLVRLQKAQ-----DEIQTLLAKSASIKTELREFYQTQLN-----------------NNVKEKLKEFQTQLDSAELTL 537 (1334)
Q Consensus 480 ~~~l~~~~~~~-----~~l~~l~~~~~~l~~~i~~~~~~~~~-----------------~~l~~~l~~~~~~~a~le~~~ 537 (1334)
+.++..+++.+ ..+.++...+..+...++.++.-..+ +.++.+|+.....+...-..-
T Consensus 1181 l~eitKqIsaLe~e~PKnltdvK~missf~d~laeiE~LrnErIKkHGaSkePLDlSDlDkLk~~LQ~iNQ~LV~~LIn~ 1260 (1439)
T PF12252_consen 1181 LVEITKQISALEKEKPKNLTDVKSMISSFNDRLAEIEFLRNERIKKHGASKEPLDLSDLDKLKGQLQKINQNLVKALINT 1260 (1439)
T ss_pred HHHHHHHHHHHHhhCCCchhhHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 538 HREFQQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKK 617 (1334)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~ 617 (1334)
....-..-+ -.. .+.-+.++...-+-+..+ +..++...... +.++++..++.-+-+.+..+..+.+-+-.-+.-
T Consensus 1261 iR~slnqme-~~t--f~~q~~eiq~n~~ll~~L--~~tlD~S~~a~-Kqk~di~kl~~~lv~kQKAYP~M~QlQ~kseal 1334 (1439)
T PF12252_consen 1261 IRVSLNQME-VKT--FEEQEKEIQQNLQLLDKL--EKTLDDSDTAQ-KQKEDIVKLNDFLVEKQKAYPAMVQLQFKSEAL 1334 (1439)
T ss_pred HHHHHHHhh-hhh--hhhhhHHHHHHHHHHHHH--HHHhcchHHHH-HHHHHHHHHHHHHHHHhhhchHHHHHhhhhHHH
Q ss_pred HHHHH
Q psy11935 618 VESVM 622 (1334)
Q Consensus 618 i~~~~ 622 (1334)
|.++|
T Consensus 1335 I~qLR 1339 (1439)
T PF12252_consen 1335 IIQLR 1339 (1439)
T ss_pred HHHHH
Done!