Query psy11935
Match_columns 1334
No_of_seqs 567 out of 2928
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 22:46:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11935.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11935hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i9v_3 NADH-quinone oxidoreduc 100.0 7.3E-98 2E-102 961.1 43.1 572 664-1316 1-708 (783)
2 2iv2_X Formate dehydrogenase H 100.0 3.2E-58 1.1E-62 592.6 36.6 373 902-1282 1-490 (715)
3 3ml1_A NAPA, periplasmic nitra 100.0 1.3E-58 4.4E-63 597.6 32.3 378 899-1282 9-544 (802)
4 2nap_A Protein (periplasmic ni 100.0 3.9E-57 1.3E-61 584.1 38.7 375 902-1283 6-507 (723)
5 1h0h_A Formate dehydrogenase ( 100.0 6.5E-57 2.2E-61 594.6 36.5 380 896-1282 4-617 (977)
6 1kqf_A FDH-N alpha, formate de 100.0 1.6E-55 5.6E-60 583.3 34.8 377 899-1281 40-660 (1015)
7 2e7z_A Acetylene hydratase AHY 100.0 2E-55 6.8E-60 568.1 29.4 376 904-1282 1-503 (727)
8 2vpz_A Thiosulfate reductase; 100.0 3E-54 1E-58 559.2 30.2 377 902-1283 37-531 (765)
9 1g8k_A Arsenite oxidase; molyb 100.0 1.7E-53 5.8E-58 556.0 33.9 376 894-1282 6-575 (825)
10 4aay_A AROA; oxidoreductase, r 100.0 2.3E-52 7.7E-57 539.2 33.1 378 897-1282 12-605 (845)
11 2ivf_A Ethylbenzene dehydrogen 100.0 1.3E-51 4.5E-56 544.7 32.6 375 903-1283 76-700 (976)
12 1q16_A Respiratory nitrate red 100.0 5.6E-50 1.9E-54 525.1 33.9 214 893-1109 25-310 (1247)
13 1ti6_A Pyrogallol hydroxytrans 100.0 9.8E-49 3.4E-53 514.1 24.0 376 903-1282 3-601 (875)
14 1tmo_A TMAO reductase, trimeth 100.0 6.5E-47 2.2E-51 495.1 28.3 354 916-1282 48-563 (829)
15 1eu1_A Dimethyl sulfoxide redu 100.0 7.4E-47 2.5E-51 491.4 27.6 358 911-1282 9-523 (780)
16 3l51_B Structural maintenance 99.9 4.6E-29 1.6E-33 259.3 5.9 148 244-391 4-160 (166)
17 1gxl_A SMC, chromosome segrega 99.9 1.3E-26 4.5E-31 253.5 11.0 173 243-420 30-212 (213)
18 3nwc_A SMC protein; structural 99.9 1.1E-26 3.9E-31 244.8 5.8 138 242-393 23-170 (189)
19 3l51_A Structural maintenance 99.9 2.1E-26 7.3E-31 238.4 7.0 133 255-389 13-161 (161)
20 1gxj_A SMC, chromosome segrega 99.9 7.4E-26 2.5E-30 241.8 6.4 158 242-402 17-184 (186)
21 2wd5_B Structural maintenance 99.9 2.5E-24 8.6E-29 235.0 6.6 156 256-419 46-211 (213)
22 2wd5_A Structural maintenance 99.9 1.4E-24 4.9E-29 239.6 3.2 134 256-390 51-196 (233)
23 3c8y_A Iron hydrogenase 1; dit 99.9 1.6E-23 5.4E-28 260.0 10.9 170 664-893 1-210 (574)
24 3i9v_3 NADH-quinone oxidoreduc 99.6 9.9E-17 3.4E-21 206.7 9.4 126 765-890 20-202 (783)
25 3c8y_A Iron hydrogenase 1; dit 99.4 1.2E-13 4E-18 171.5 6.5 126 765-891 20-169 (574)
26 1c1g_A Tropomyosin; contractIl 99.0 9.4E-07 3.2E-11 99.2 37.2 183 54-241 89-274 (284)
27 1kf6_B Fumarate reductase iron 98.9 2.4E-11 8.2E-16 134.8 -4.7 61 669-750 23-120 (243)
28 1c1g_A Tropomyosin; contractIl 98.8 7.3E-06 2.5E-10 91.9 36.3 40 194-234 221-260 (284)
29 2wdq_B Succinate dehydrogenase 98.8 1.8E-10 6.1E-15 127.3 -4.2 50 685-745 71-123 (238)
30 1i84_S Smooth muscle myosin he 98.5 1.9E-07 6.5E-12 125.7 11.1 80 6-85 861-943 (1184)
31 1i84_S Smooth muscle myosin he 98.5 1.8E-07 6.1E-12 126.0 10.6 100 10-111 858-960 (1184)
32 2c42_A Pyruvate-ferredoxin oxi 98.1 5.4E-07 1.9E-11 120.0 2.4 31 706-736 634-666 (1231)
33 1kf6_B Fumarate reductase iron 98.1 5.3E-07 1.8E-11 99.7 0.2 103 765-890 37-165 (243)
34 2wdq_B Succinate dehydrogenase 97.8 1.5E-06 5.2E-11 95.7 -2.7 111 765-890 36-166 (238)
35 1t3q_A Quinoline 2-oxidoreduct 97.7 8.3E-06 2.8E-10 84.1 2.5 75 664-744 11-120 (168)
36 3cf4_A Acetyl-COA decarboxylas 97.4 2.2E-06 7.5E-11 109.2 -10.1 73 659-746 311-391 (807)
37 1rm6_C 4-hydroxybenzoyl-COA re 97.3 5.7E-05 2E-09 77.0 1.7 69 663-731 3-106 (161)
38 1n62_A Carbon monoxide dehydro 97.2 0.00012 4E-09 74.8 2.8 68 664-731 5-108 (166)
39 2c42_A Pyruvate-ferredoxin oxi 97.2 0.00015 5.3E-09 96.6 3.8 71 810-890 633-705 (1231)
40 1jb0_C Photosystem I iron-sulf 97.1 9.7E-05 3.3E-09 66.0 1.2 35 870-904 44-78 (80)
41 3na7_A HP0958; flagellar bioge 97.1 0.072 2.5E-06 58.7 24.6 12 298-309 224-235 (256)
42 1ffv_A CUTS, iron-sulfur prote 97.1 0.00018 6E-09 73.2 3.0 68 664-731 5-107 (163)
43 3vkg_A Dynein heavy chain, cyt 97.0 0.098 3.4E-06 75.4 29.0 15 1264-1278 3223-3237(3245)
44 2v71_A Nuclear distribution pr 96.7 0.27 9.1E-06 50.5 22.3 26 122-147 128-153 (189)
45 3vkg_A Dynein heavy chain, cyt 96.7 0.21 7.3E-06 72.0 28.8 40 174-213 2034-2073(3245)
46 2h88_B Succinate dehydrogenase 96.6 0.0012 4.2E-08 72.9 4.5 40 765-805 45-100 (252)
47 3o0z_A RHO-associated protein 96.6 0.33 1.1E-05 48.6 21.1 70 171-241 93-166 (168)
48 1f2g_A Ferredoxin II; electron 96.6 0.00062 2.1E-08 56.5 1.5 51 831-889 6-56 (58)
49 3o0z_A RHO-associated protein 96.5 0.31 1.1E-05 48.7 20.4 24 165-188 115-138 (168)
50 1xer_A Ferredoxin; electron tr 96.4 0.00061 2.1E-08 64.1 0.2 21 870-890 80-100 (103)
51 1iqz_A Ferredoxin; iron-sulfer 96.3 0.00064 2.2E-08 60.9 0.1 28 872-899 50-77 (81)
52 1y56_A Hypothetical protein PH 96.3 0.0029 1E-07 77.3 6.0 28 662-689 13-40 (493)
53 1dwl_A Ferredoxin I; electron 96.2 0.0023 7.9E-08 53.0 3.0 19 871-889 39-57 (59)
54 1dax_A Ferredoxin I; electron 96.2 0.00047 1.6E-08 58.6 -1.4 20 871-890 42-61 (64)
55 1hfe_L Protein (Fe-only hydrog 96.2 0.0011 3.9E-08 78.7 1.2 48 828-890 36-83 (421)
56 1rof_A Ferredoxin; electron tr 96.2 0.00093 3.2E-08 55.7 0.2 20 871-890 39-58 (60)
57 1t3q_A Quinoline 2-oxidoreduct 96.1 0.0005 1.7E-08 70.8 -1.8 88 789-884 63-155 (168)
58 2dfs_A Myosin-5A; myosin-V, in 96.1 0.22 7.4E-06 65.8 22.1 24 521-544 984-1007(1080)
59 2fdn_A Ferredoxin; electron tr 96.0 0.0024 8.1E-08 52.3 2.2 19 871-889 35-53 (55)
60 3i9v_9 NADH-quinone oxidoreduc 96.0 0.0013 4.4E-08 68.8 0.6 22 870-891 95-116 (182)
61 1sj1_A Ferredoxin; thermostabi 96.0 0.00078 2.7E-08 57.4 -1.0 18 873-890 46-63 (66)
62 2bs2_B Quinol-fumarate reducta 96.0 0.00095 3.2E-08 73.4 -0.6 20 869-888 204-223 (241)
63 3vr8_B Iron-sulfur subunit of 95.9 0.0023 7.7E-08 71.2 1.8 20 869-888 235-254 (282)
64 1bc6_A 7-Fe ferredoxin; electr 95.7 0.0034 1.2E-07 55.4 1.9 21 871-891 37-57 (77)
65 3gyx_B Adenylylsulfate reducta 95.7 0.014 4.7E-07 59.9 6.6 57 828-893 10-66 (166)
66 2efr_A General control protein 95.7 1.9 6.6E-05 42.8 23.6 25 90-115 76-100 (155)
67 2efr_A General control protein 95.6 1.8 6.2E-05 43.0 21.1 9 66-74 4-12 (155)
68 2dfs_A Myosin-5A; myosin-V, in 95.5 0.19 6.5E-06 66.4 17.9 15 33-47 924-938 (1080)
69 1h98_A Ferredoxin; electron tr 95.4 0.0031 1.1E-07 55.9 0.6 22 871-892 37-58 (78)
70 2fxo_A Myosin heavy chain, car 95.4 0.8 2.8E-05 44.5 17.8 31 53-83 67-97 (129)
71 1rgv_A Ferredoxin; electron tr 95.3 0.0063 2.2E-07 54.1 2.3 23 870-892 34-62 (80)
72 7fd1_A FD1, protein (7-Fe ferr 95.3 0.0049 1.7E-07 58.2 1.6 21 872-892 38-58 (106)
73 1gte_A Dihydropyrimidine dehyd 95.3 0.0068 2.3E-07 80.7 3.5 53 828-893 954-1007(1025)
74 3hrd_D Nicotinate dehydrogenas 95.3 0.007 2.4E-07 61.1 2.6 66 664-729 5-105 (160)
75 2fgo_A Ferredoxin; allochromat 95.1 0.0078 2.7E-07 53.8 2.1 22 871-892 35-62 (82)
76 1jnr_B Adenylylsulfate reducta 95.0 0.0039 1.3E-07 63.0 -0.1 23 871-893 45-67 (150)
77 2v2k_A Ferredoxin; iron, trans 94.9 0.0076 2.6E-07 56.7 1.7 21 871-891 37-57 (105)
78 2ocy_A RAB guanine nucleotide 94.9 2.8 9.5E-05 41.5 19.6 72 164-236 75-147 (154)
79 1frr_A Ferredoxin I; electron 94.9 0.017 5.7E-07 53.3 3.8 24 664-687 3-28 (95)
80 3eun_A Ferredoxin; electron tr 94.8 0.0087 3E-07 53.5 1.7 22 871-892 35-62 (82)
81 2zvs_A Uncharacterized ferredo 94.5 0.014 4.7E-07 52.6 2.0 21 871-891 35-62 (85)
82 3oja_B Anopheles plasmodium-re 94.3 0.2 6.7E-06 62.6 13.0 7 198-204 553-559 (597)
83 3oja_B Anopheles plasmodium-re 94.2 0.11 3.8E-06 64.8 10.5 6 199-204 547-552 (597)
84 1q16_B Respiratory nitrate red 94.1 0.011 3.8E-07 70.8 0.9 33 872-913 216-248 (512)
85 2ivf_B Ethylbenzene dehydrogen 93.9 0.014 4.8E-07 67.0 1.2 33 872-913 183-215 (352)
86 1frd_A Heterocyst [2Fe-2S] fer 93.5 0.067 2.3E-06 49.5 4.9 24 664-687 4-31 (98)
87 1jq4_A Methane monooxygenase c 93.5 0.11 3.9E-06 48.0 6.4 25 662-686 2-31 (98)
88 2fxo_A Myosin heavy chain, car 93.4 6.1 0.00021 38.2 18.9 32 13-44 17-48 (129)
89 3ghg_A Fibrinogen alpha chain; 93.3 1.9 6.4E-05 50.3 17.0 44 179-222 114-157 (562)
90 3cf4_A Acetyl-COA decarboxylas 93.0 0.0029 9.9E-08 80.7 -7.3 91 791-889 329-433 (807)
91 2ocy_A RAB guanine nucleotide 92.4 9.2 0.00031 37.8 20.6 29 531-561 111-139 (154)
92 3u1c_A Tropomyosin alpha-1 cha 92.4 4 0.00014 37.7 15.0 11 23-33 9-19 (101)
93 2vpz_B NRFC protein; oxidoredu 92.2 0.039 1.3E-06 58.2 1.4 22 870-891 55-78 (195)
94 2fgo_A Ferredoxin; allochromat 92.1 0.044 1.5E-06 48.8 1.4 19 872-890 7-25 (82)
95 2zvs_A Uncharacterized ferredo 92.1 0.056 1.9E-06 48.5 2.0 35 872-913 7-41 (85)
96 1rgv_A Ferredoxin; electron tr 91.6 0.061 2.1E-06 47.6 1.7 19 872-890 7-25 (80)
97 2ivf_B Ethylbenzene dehydrogen 91.5 0.037 1.3E-06 63.5 0.3 23 870-892 208-239 (352)
98 3eun_A Ferredoxin; electron tr 91.4 0.065 2.2E-06 47.7 1.7 19 872-890 7-25 (82)
99 1ti6_B Pyrogallol hydroxytrans 91.3 0.07 2.4E-06 59.3 2.2 32 872-912 98-129 (274)
100 2fdn_A Ferredoxin; electron tr 91.2 0.088 3E-06 42.7 2.2 20 872-891 7-26 (55)
101 1iue_A Ferredoxin; electron tr 91.1 0.22 7.4E-06 46.0 5.0 24 664-687 4-29 (98)
102 3nvw_A Xanthine dehydrogenase/ 90.9 0.09 3.1E-06 53.1 2.3 64 662-729 2-116 (164)
103 2xzr_A Immunoglobulin-binding 90.7 8.4 0.00029 34.0 16.2 49 174-222 54-102 (114)
104 1kqf_B FDH-N beta S, formate d 90.5 0.11 3.6E-06 58.6 2.8 42 872-919 99-146 (294)
105 3ah7_A [2Fe-2S]ferredoxin; [2F 90.3 0.25 8.4E-06 47.0 4.8 17 670-686 15-31 (113)
106 2v66_B Nuclear distribution pr 90.2 11 0.00039 35.0 15.4 81 422-502 6-88 (111)
107 3mm5_B Sulfite reductase, diss 89.7 0.051 1.7E-06 63.2 -0.8 14 975-988 295-308 (366)
108 2b9c_A Striated-muscle alpha t 89.6 1.2 3.9E-05 44.2 9.0 26 59-84 7-32 (147)
109 3u59_A Tropomyosin beta chain; 89.5 6.6 0.00023 36.2 13.6 29 180-208 49-77 (101)
110 1hfe_L Protein (Fe-only hydrog 89.5 0.1 3.4E-06 61.9 1.5 20 872-891 34-53 (421)
111 1jb0_C Photosystem I iron-sulf 89.4 0.051 1.7E-06 47.9 -0.8 21 872-892 9-29 (80)
112 1h0h_B Formate dehydrogenase ( 89.3 0.11 3.7E-06 55.6 1.5 20 872-891 107-128 (214)
113 3cf4_G Acetyl-COA decarboxylas 89.3 1.7 5.9E-05 44.3 10.6 116 980-1101 24-154 (170)
114 2gag_A Heterotetrameric sarcos 88.9 0.38 1.3E-05 63.4 6.5 26 662-687 20-45 (965)
115 1q16_B Respiratory nitrate red 88.8 0.11 3.6E-06 62.4 1.1 21 870-890 241-270 (512)
116 3ghg_A Fibrinogen alpha chain; 88.8 6.3 0.00022 46.0 15.4 15 375-389 4-18 (562)
117 2vpz_B NRFC protein; oxidoredu 88.8 0.12 4E-06 54.5 1.3 21 872-892 89-109 (195)
118 1bc6_A 7-Fe ferredoxin; electr 88.7 0.13 4.6E-06 45.0 1.4 19 872-890 7-27 (77)
119 1awd_A Ferredoxin; electron tr 88.6 0.33 1.1E-05 44.4 4.0 23 664-686 2-26 (94)
120 3i9v_9 NADH-quinone oxidoreduc 88.3 0.15 5.2E-06 52.8 1.7 21 871-891 51-71 (182)
121 1deq_A Fibrinogen (alpha chain 88.1 9 0.00031 43.1 15.5 12 261-274 211-222 (390)
122 1xer_A Ferredoxin; electron tr 88.0 0.091 3.1E-06 48.9 -0.2 20 872-891 44-63 (103)
123 3hnw_A Uncharacterized protein 87.8 3.5 0.00012 40.4 10.9 47 176-222 83-129 (138)
124 1h0h_B Formate dehydrogenase ( 87.6 0.14 4.7E-06 54.8 0.9 22 870-891 69-95 (214)
125 2v4h_A NF-kappa-B essential mo 87.5 4.4 0.00015 37.3 10.4 47 403-458 24-70 (110)
126 4gkw_A Spindle assembly abnorm 87.5 19 0.00064 33.7 19.8 40 404-445 12-51 (167)
127 3tnu_B Keratin, type II cytosk 87.1 11 0.00039 36.3 14.2 32 54-85 35-66 (129)
128 2v4h_A NF-kappa-B essential mo 87.0 5.9 0.0002 36.4 11.0 30 421-450 26-55 (110)
129 1h98_A Ferredoxin; electron tr 86.8 0.15 5E-06 44.8 0.5 20 872-891 7-28 (78)
130 1x79_B RAB GTPase binding effe 86.8 8.8 0.0003 35.7 12.2 67 8-77 5-74 (112)
131 3tnu_B Keratin, type II cytosk 86.6 14 0.00046 35.8 14.4 93 53-151 27-123 (129)
132 3tnu_A Keratin, type I cytoske 86.6 9.1 0.00031 37.1 13.2 18 135-152 109-126 (131)
133 1kqf_B FDH-N beta S, formate d 86.2 0.17 6E-06 56.8 0.7 18 872-889 132-149 (294)
134 7fd1_A FD1, protein (7-Fe ferr 86.0 0.17 5.8E-06 47.4 0.5 20 872-891 7-28 (106)
135 1l8d_A DNA double-strand break 85.8 12 0.00043 34.9 13.5 42 10-51 4-45 (112)
136 3tnu_A Keratin, type I cytoske 85.8 9.9 0.00034 36.8 13.0 14 63-76 46-59 (131)
137 3q8t_A Beclin-1; autophagy, AT 85.6 13 0.00045 33.8 12.8 14 209-222 66-79 (96)
138 3hnw_A Uncharacterized protein 85.4 5 0.00017 39.2 10.6 59 54-114 74-132 (138)
139 2zqm_A Prefoldin beta subunit 85.1 16 0.00053 34.5 14.0 79 10-88 7-103 (117)
140 3ol1_A Vimentin; structural ge 84.9 23 0.0008 33.6 14.8 25 125-149 21-45 (119)
141 3mm5_A Sulfite reductase, diss 84.8 0.16 5.6E-06 59.5 -0.3 14 975-988 337-350 (418)
142 2jee_A YIIU; FTSZ, septum, coi 84.5 9.4 0.00032 33.3 10.5 43 580-622 33-75 (81)
143 1ti6_B Pyrogallol hydroxytrans 84.1 0.36 1.2E-05 53.5 2.1 21 870-890 123-156 (274)
144 1deq_A Fibrinogen (alpha chain 84.0 25 0.00087 39.5 16.5 38 104-141 100-137 (390)
145 1i7h_A Ferredoxin; 2Fe-2S,elec 83.9 1.9 6.5E-05 40.6 6.8 17 670-686 15-31 (111)
146 3oja_A Leucine-rich immune mol 83.6 12 0.0004 45.1 15.4 16 25-40 369-384 (487)
147 2jee_A YIIU; FTSZ, septum, coi 83.2 15 0.0005 32.2 11.1 15 63-77 56-70 (81)
148 2gmh_A Electron transfer flavo 82.9 0.27 9.2E-06 61.1 0.4 21 871-891 551-571 (584)
149 1doi_A 2Fe-2S ferredoxin; halo 82.9 0.29 9.9E-06 47.6 0.5 24 663-686 28-52 (128)
150 3ol1_A Vimentin; structural ge 82.7 33 0.0011 32.5 15.9 11 106-116 90-100 (119)
151 1fxk_A Prefoldin; archaeal pro 82.6 15 0.00051 34.0 12.4 76 13-88 5-98 (107)
152 1ffv_A CUTS, iron-sulfur prote 82.4 0.58 2E-05 47.4 2.6 53 781-834 50-105 (163)
153 1a70_A Ferredoxin; iron-sulfur 82.3 1.1 3.9E-05 41.0 4.4 24 664-687 4-29 (97)
154 1krh_A Benzoate 1,2-dioxygenas 82.1 0.87 3E-05 52.2 4.3 24 663-686 2-30 (338)
155 1tyg_B YJBS; alpha beta barrel 82.1 0.7 2.4E-05 41.5 2.7 26 661-686 17-43 (87)
156 2w3s_A Xanthine dehydrogenase; 81.8 0.57 1.9E-05 55.9 2.6 66 664-729 2-107 (462)
157 3jsv_C NF-kappa-B essential mo 81.3 9.2 0.00032 34.2 9.4 47 417-463 7-53 (94)
158 1n62_A Carbon monoxide dehydro 81.2 0.44 1.5E-05 48.4 1.2 46 789-834 57-106 (166)
159 3a7p_A Autophagy protein 16; c 81.1 16 0.00055 35.8 11.9 47 176-222 83-129 (152)
160 2v2k_A Ferredoxin; iron, trans 81.0 0.26 8.7E-06 46.1 -0.6 19 872-890 7-27 (105)
161 1czp_A Ferredoxin I; [2Fe-2S] 80.7 1.5 5.3E-05 40.2 4.7 19 789-807 74-92 (98)
162 4gkw_A Spindle assembly abnorm 80.1 39 0.0013 31.6 23.4 35 178-212 101-135 (167)
163 3bas_A Myosin heavy chain, str 79.9 21 0.00071 32.0 11.6 22 14-35 19-40 (89)
164 3oja_A Leucine-rich immune mol 79.5 37 0.0013 40.6 17.8 29 194-222 440-468 (487)
165 1vlb_A Aldehyde oxidoreductase 79.0 1.5 5.3E-05 56.8 5.5 66 664-729 3-104 (907)
166 1rm6_C 4-hydroxybenzoyl-COA re 78.8 0.51 1.7E-05 47.8 0.7 95 780-883 48-147 (161)
167 2e7s_A RAB guanine nucleotide 78.3 5.8 0.0002 38.2 7.8 73 158-231 57-130 (135)
168 1gte_A Dihydropyrimidine dehyd 78.2 0.69 2.4E-05 61.4 1.9 24 810-833 881-904 (1025)
169 3a7p_A Autophagy protein 16; c 78.0 21 0.00071 35.0 11.6 52 171-222 71-122 (152)
170 1b9r_A Protein (terpredoxin); 78.0 5.2 0.00018 37.1 7.4 22 665-686 3-27 (105)
171 2nrj_A HBL B protein; enteroto 77.2 1E+02 0.0035 34.9 19.7 74 402-477 122-196 (346)
172 3or1_B Sulfite reductase beta; 76.9 0.53 1.8E-05 54.9 0.2 19 872-890 257-275 (386)
173 3mq7_A Bone marrow stromal ant 76.7 47 0.0016 30.7 14.2 25 198-222 73-97 (121)
174 3mq7_A Bone marrow stromal ant 76.3 49 0.0017 30.6 14.3 44 9-52 25-68 (121)
175 3swk_A Vimentin; cytoskeleton, 76.1 25 0.00085 31.3 10.8 34 53-86 47-80 (86)
176 2e7s_A RAB guanine nucleotide 75.8 15 0.00051 35.4 9.8 22 120-141 70-91 (135)
177 3jsv_C NF-kappa-B essential mo 75.2 24 0.00082 31.6 10.2 77 405-483 4-87 (94)
178 1dax_A Ferredoxin I; electron 74.8 0.56 1.9E-05 39.1 -0.2 18 872-890 10-27 (64)
179 1jnr_B Adenylylsulfate reducta 74.7 0.56 1.9E-05 47.0 -0.3 20 872-891 9-33 (150)
180 4h22_A Leucine-rich repeat fli 74.1 27 0.00092 31.8 10.4 20 174-193 36-55 (103)
181 1m1j_B Fibrinogen beta chain; 74.0 59 0.002 38.2 16.3 26 307-332 297-329 (464)
182 1go4_E MAD1 (mitotic arrest de 73.2 9.2 0.00032 34.9 7.2 64 16-79 12-92 (100)
183 1f0z_A THis protein; ubiquitin 73.0 1.8 6.2E-05 36.5 2.5 22 666-687 2-23 (66)
184 1l8d_A DNA double-strand break 72.7 50 0.0017 30.7 12.9 18 138-155 24-41 (112)
185 3gyx_B Adenylylsulfate reducta 72.7 0.62 2.1E-05 47.5 -0.6 20 872-891 8-32 (166)
186 1fxk_C Protein (prefoldin); ar 72.6 65 0.0022 30.9 14.1 36 53-88 86-121 (133)
187 2i1j_A Moesin; FERM, coiled-co 72.1 9.8 0.00034 46.6 9.8 24 64-87 337-360 (575)
188 2iv2_X Formate dehydrogenase H 71.5 16 0.00054 46.3 12.0 50 1192-1241 166-222 (715)
189 1m1j_A Fibrinogen alpha subuni 71.1 81 0.0028 36.3 15.8 27 196-222 132-158 (491)
190 2pa8_D DNA-directed RNA polyme 71.0 0.86 2.9E-05 50.3 0.0 15 974-988 236-250 (265)
191 1xlq_A Putidaredoxin, PDX; [2F 70.8 5.5 0.00019 36.9 5.6 23 664-686 2-27 (106)
192 3swk_A Vimentin; cytoskeleton, 70.5 46 0.0016 29.5 11.2 25 56-80 36-60 (86)
193 1d7m_A Cortexillin I; coiled-c 70.2 55 0.0019 28.6 14.4 15 600-614 72-86 (101)
194 1f2g_A Ferredoxin II; electron 70.1 0.7 2.4E-05 37.5 -0.7 17 872-889 7-23 (58)
195 2eqb_B RAB guanine nucleotide 69.8 64 0.0022 29.2 13.8 20 121-140 51-70 (97)
196 3s4r_A Vimentin; alpha-helix, 69.8 59 0.002 29.3 11.9 37 402-440 8-44 (93)
197 1ytl_A Acetyl-COA decarboxylas 69.8 6.9 0.00024 40.0 6.5 114 972-1092 20-147 (174)
198 3mm5_A Sulfite reductase, diss 69.8 1.2 4.2E-05 52.1 1.0 42 874-922 258-302 (418)
199 3j16_B RLI1P; ribosome recycli 69.7 0.96 3.3E-05 56.0 0.1 51 836-891 22-73 (608)
200 1rof_A Ferredoxin; electron tr 69.6 0.72 2.5E-05 37.6 -0.7 17 872-889 9-25 (60)
201 2zqm_A Prefoldin beta subunit 69.5 52 0.0018 30.8 12.3 29 590-618 79-107 (117)
202 1wri_A Ferredoxin II, ferredox 69.4 9.2 0.00031 34.5 6.7 23 664-686 3-27 (93)
203 2xzr_A Immunoglobulin-binding 68.7 63 0.0021 28.6 15.4 33 190-222 56-88 (114)
204 1dgj_A Aldehyde oxidoreductase 68.2 1.4 4.9E-05 57.1 1.2 66 664-729 3-104 (907)
205 3or1_A Sulfite reductase alpha 67.7 0.98 3.3E-05 53.0 -0.4 17 872-888 302-318 (437)
206 1m1j_A Fibrinogen alpha subuni 67.4 78 0.0027 36.4 14.7 27 111-137 105-131 (491)
207 2i1j_A Moesin; FERM, coiled-co 67.4 9.5 0.00032 46.8 8.2 20 349-368 180-200 (575)
208 2kl0_A Putative thiamin biosyn 66.8 2.8 9.5E-05 36.2 2.4 22 666-688 2-23 (73)
209 3mq9_A Bone marrow stromal ant 66.2 48 0.0016 39.4 14.1 29 517-545 400-428 (471)
210 1iqz_A Ferredoxin; iron-sulfer 66.1 1.1 3.9E-05 39.3 -0.2 17 872-889 10-26 (81)
211 3unc_A Xanthine dehydrogenase/ 65.3 3.6 0.00012 55.5 4.2 64 663-730 4-118 (1332)
212 3lq1_A 2-succinyl-5-enolpyruvy 65.2 17 0.00058 44.7 10.0 109 977-1090 211-324 (578)
213 3mq9_A Bone marrow stromal ant 65.1 64 0.0022 38.3 15.0 22 197-218 444-465 (471)
214 3mm5_B Sulfite reductase, diss 64.5 1.3 4.4E-05 51.4 -0.3 17 874-890 209-227 (366)
215 3uux_B Mitochondrial division 64.2 34 0.0012 36.1 10.2 70 12-81 152-224 (242)
216 2y5c_A Adrenodoxin-like protei 63.7 3 0.0001 39.1 2.1 25 662-686 3-32 (109)
217 1dwl_A Ferredoxin I; electron 63.6 2 7E-05 34.6 0.9 17 872-889 8-24 (59)
218 1uwm_A Ferredoxin VI, FDVI; el 63.4 7.7 0.00026 35.9 5.0 22 665-686 3-27 (106)
219 3s4r_A Vimentin; alpha-helix, 63.2 86 0.0029 28.2 12.9 32 480-511 11-43 (93)
220 3qh9_A Liprin-beta-2; coiled-c 63.1 33 0.0011 29.7 8.1 52 517-570 22-73 (81)
221 1ozh_A ALS, acetolactate synth 62.8 14 0.00048 45.3 8.7 108 977-1091 194-308 (566)
222 3i00_A HIP-I, huntingtin-inter 61.1 67 0.0023 30.4 10.9 22 31-52 16-37 (120)
223 3nmd_A CGMP dependent protein 60.6 32 0.0011 29.3 7.5 44 6-49 23-66 (72)
224 3qh9_A Liprin-beta-2; coiled-c 60.5 84 0.0029 27.2 10.4 48 175-222 26-73 (81)
225 2k5p_A THis protein, thiamine- 60.2 2.9 9.8E-05 36.7 1.2 28 665-692 1-30 (78)
226 3iv1_A Tumor susceptibility ge 60.1 46 0.0016 28.8 8.6 54 560-615 20-73 (78)
227 1m1j_C Fibrinogen gamma chain; 59.8 1E+02 0.0035 35.7 14.5 8 382-389 286-293 (409)
228 3cvf_A Homer-3, homer protein 58.9 91 0.0031 27.1 10.4 43 166-208 11-53 (79)
229 3etw_A Adhesin A; antiparallel 58.8 1.2E+02 0.0042 28.5 14.1 31 55-85 27-57 (119)
230 2w83_C C-JUN-amino-terminal ki 58.7 49 0.0017 28.3 8.3 56 23-78 16-74 (77)
231 3eya_A Pyruvate dehydrogenase 58.2 7.3 0.00025 47.7 4.9 101 977-1090 188-295 (549)
232 4emc_A Monopolin complex subun 58.1 53 0.0018 33.3 10.0 142 161-313 13-168 (190)
233 1sj1_A Ferredoxin; thermostabi 58.0 1.9 6.6E-05 35.7 -0.2 18 872-890 10-27 (66)
234 2bs2_B Quinol-fumarate reducta 57.9 1.6 5.3E-05 47.5 -1.1 18 872-889 150-167 (241)
235 2x7j_A 2-succinyl-5-enolpyruvy 57.9 19 0.00065 44.5 8.7 109 978-1091 231-345 (604)
236 1ik9_A DNA repair protein XRCC 57.1 96 0.0033 32.5 12.5 38 15-52 138-175 (213)
237 2bt6_A Adrenodoxin 1; rutheniu 56.9 5 0.00017 37.4 2.4 25 662-686 4-33 (108)
238 2b5u_A Colicin E3; high resolu 55.9 3E+02 0.01 32.1 19.0 17 263-279 476-494 (551)
239 2kmm_A Guanosine-3',5'-BIS(dip 55.7 5.7 0.0002 33.9 2.4 24 665-688 3-27 (73)
240 1ybh_A Acetolactate synthase, 55.4 15 0.00051 45.3 7.1 109 977-1091 201-314 (590)
241 2cu3_A Unknown function protei 55.0 8.3 0.00028 32.2 3.2 18 666-684 1-18 (64)
242 2h88_B Succinate dehydrogenase 54.6 2.6 9E-05 46.0 0.1 21 870-890 155-175 (252)
243 1q16_A Respiratory nitrate red 54.4 58 0.002 43.5 12.7 51 1192-1242 246-303 (1247)
244 3i00_A HIP-I, huntingtin-inter 54.3 85 0.0029 29.7 10.3 19 493-511 17-35 (120)
245 3hhm_B NISH2 P85alpha; PI3KCA, 53.7 3E+02 0.01 31.4 17.2 22 268-289 331-356 (373)
246 3l51_B Structural maintenance 53.1 9.7 0.00033 38.5 4.0 54 323-376 15-76 (166)
247 2no2_A HIP-I, huntingtin-inter 52.7 1.4E+02 0.0049 27.5 16.4 35 9-43 8-42 (107)
248 2oqq_A Transcription factor HY 52.5 49 0.0017 24.8 6.3 36 402-439 2-37 (42)
249 3or1_B Sulfite reductase beta; 52.4 2.3 8E-05 49.4 -0.9 15 876-890 224-238 (386)
250 4feg_A Pyruvate oxidase; carba 52.4 8 0.00027 47.9 3.9 104 977-1090 199-309 (603)
251 1x79_B RAB GTPase binding effe 52.4 1.5E+02 0.0051 27.6 13.0 18 63-80 46-63 (112)
252 2lw1_A ABC transporter ATP-bin 52.3 51 0.0017 29.4 8.2 26 603-629 57-82 (89)
253 3r6n_A Desmoplakin; spectrin r 51.4 3.5E+02 0.012 31.7 28.7 13 173-185 204-216 (450)
254 1x8y_A Lamin A/C; structural p 51.0 1E+02 0.0035 27.3 9.8 31 125-155 50-80 (86)
255 2zdi_C Prefoldin subunit alpha 50.7 1.1E+02 0.0039 29.9 11.4 41 8-48 8-51 (151)
256 3fld_A Protein TRAI, DNA helic 50.7 8.2 0.00028 37.2 2.7 43 347-390 102-148 (153)
257 3onj_A T-snare VTI1; helix, HA 50.5 1.4E+02 0.0049 26.9 12.0 54 28-81 6-60 (97)
258 1x8y_A Lamin A/C; structural p 50.3 70 0.0024 28.3 8.7 43 580-622 34-76 (86)
259 3zyy_X Iron-sulfur cluster bin 50.1 15 0.00053 45.0 5.8 23 665-687 6-28 (631)
260 1gk4_A Vimentin; intermediate 49.3 1.4E+02 0.0047 26.3 12.0 31 125-155 48-78 (84)
261 4h22_A Leucine-rich repeat fli 49.2 1.6E+02 0.0053 26.9 10.9 43 180-222 21-63 (103)
262 2iht_A Carboxyethylarginine sy 47.7 21 0.00072 43.8 6.7 111 975-1091 201-323 (573)
263 3efg_A Protein SLYX homolog; x 47.7 44 0.0015 29.1 6.7 10 175-184 21-30 (78)
264 2k48_A Nucleoprotein; viral pr 47.4 80 0.0027 28.7 8.3 59 415-473 38-98 (107)
265 1ryj_A Unknown; beta/alpha pro 47.0 5.4 0.00018 34.0 0.8 25 663-687 3-31 (70)
266 2no2_A HIP-I, huntingtin-inter 45.5 1.9E+02 0.0064 26.8 16.5 58 16-73 8-65 (107)
267 4dvy_P Cytotoxicity-associated 45.4 4.3E+02 0.015 30.9 20.6 11 146-156 723-733 (876)
268 1tke_A Threonyl-tRNA synthetas 45.3 20 0.00069 38.1 5.2 57 664-720 1-81 (224)
269 1ytl_A Acetyl-COA decarboxylas 45.2 43 0.0015 34.0 7.4 39 1113-1154 24-63 (174)
270 3a7o_A Autophagy protein 16; c 45.0 67 0.0023 26.9 6.8 50 553-604 20-69 (75)
271 3cve_A Homer protein homolog 1 44.6 1.5E+02 0.0051 25.3 10.8 20 179-198 18-37 (72)
272 4emc_A Monopolin complex subun 44.4 1.2E+02 0.0041 30.7 10.1 35 53-87 11-45 (190)
273 3ni0_A Bone marrow stromal ant 44.3 1.7E+02 0.0059 26.0 10.8 6 217-222 74-79 (99)
274 3hrd_D Nicotinate dehydrogenas 44.3 10 0.00036 38.0 2.5 55 778-833 47-104 (160)
275 2qyw_A Vesicle transport throu 43.7 1.8E+02 0.0061 26.6 10.6 83 23-113 15-99 (102)
276 2xu6_A MDV1 coiled coil; prote 43.6 1.1E+02 0.0039 25.9 8.1 61 20-80 4-67 (72)
277 2xdj_A Uncharacterized protein 43.4 1.3E+02 0.0046 26.4 9.1 24 25-48 22-45 (83)
278 1h0h_A Formate dehydrogenase ( 43.2 21 0.00073 46.8 6.0 51 1192-1242 184-241 (977)
279 2vbi_A Pyruvate decarboxylase; 43.2 16 0.00055 44.8 4.6 109 977-1090 196-311 (566)
280 1l5p_A Ferredoxin; [2Fe-2S] cl 43.2 11 0.00039 33.9 2.4 23 664-686 2-26 (93)
281 3iv1_A Tumor susceptibility ge 42.8 1.7E+02 0.0057 25.4 9.6 15 174-188 24-38 (78)
282 1go4_E MAD1 (mitotic arrest de 42.4 1E+02 0.0036 28.0 8.4 22 454-475 72-93 (100)
283 3swy_A Cyclic nucleotide-gated 42.3 1E+02 0.0035 23.9 7.0 6 53-58 35-40 (46)
284 2lw1_A ABC transporter ATP-bin 42.0 1.5E+02 0.0051 26.3 9.6 10 403-412 22-31 (89)
285 3zyv_A AOH1; oxidoreductase, m 41.9 29 0.00098 47.0 7.0 41 661-701 6-91 (1335)
286 3vr8_B Iron-sulfur subunit of 41.9 7.4 0.00025 43.0 1.1 20 870-889 179-198 (282)
287 1t9b_A Acetolactate synthase, 41.6 54 0.0018 41.0 9.1 86 977-1062 276-368 (677)
288 3l51_A Structural maintenance 40.2 32 0.0011 34.4 5.5 54 323-376 13-74 (161)
289 1wwt_A Threonyl-tRNA synthetas 40.0 16 0.00055 32.4 2.9 28 661-688 8-37 (88)
290 3bk7_A ABC transporter ATP-bin 40.0 8.5 0.00029 47.6 1.3 19 872-890 68-86 (607)
291 2wvg_A PDC, pyruvate decarboxy 39.9 24 0.00084 43.1 5.5 109 977-1090 196-311 (568)
292 3ghg_C Fibrinogen gamma chain; 39.0 4.7E+02 0.016 30.1 15.4 6 256-261 163-168 (411)
293 2wlb_A ETP1-FD, electron trans 38.8 12 0.00041 34.4 1.9 23 664-686 5-30 (103)
294 1kqf_A FDH-N alpha, formate de 38.7 25 0.00085 46.4 5.6 51 1192-1242 222-280 (1015)
295 2nap_A Protein (periplasmic ni 38.6 27 0.00091 44.2 5.7 50 1192-1241 166-224 (723)
296 2ivf_A Ethylbenzene dehydrogen 38.5 24 0.00084 46.3 5.4 51 1192-1242 246-303 (976)
297 1f5n_A Interferon-induced guan 38.4 6.2E+02 0.021 30.7 22.2 17 195-211 566-582 (592)
298 3mov_A Lamin-B1; LMNB1, B-type 38.3 1E+02 0.0034 27.9 7.8 30 126-155 60-89 (95)
299 1wle_A Seryl-tRNA synthetase; 37.9 1.3E+02 0.0046 35.8 11.2 24 800-825 209-232 (501)
300 2a01_A Apolipoprotein A-I; fou 37.9 3.6E+02 0.012 28.7 13.7 197 404-606 18-238 (243)
301 3hui_A Ferredoxin; cytochrome 36.7 18 0.00062 34.7 2.8 25 662-686 19-48 (126)
302 3or1_A Sulfite reductase alpha 36.5 8.4 0.00029 45.2 0.5 39 876-921 277-318 (437)
303 3ghg_C Fibrinogen gamma chain; 36.2 3.8E+02 0.013 30.9 14.0 17 905-921 178-194 (411)
304 3qne_A Seryl-tRNA synthetase, 35.9 1.4E+02 0.0047 35.5 10.7 23 802-826 177-199 (485)
305 4etp_A Kinesin-like protein KA 35.9 51 0.0017 38.3 7.0 15 1190-1204 363-377 (403)
306 1v5e_A Pyruvate oxidase; oxido 35.9 53 0.0018 40.3 7.6 106 977-1090 192-302 (590)
307 3trj_A Phosphoheptose isomeras 35.6 91 0.0031 32.2 8.4 109 975-1089 31-150 (201)
308 3m91_A Proteasome-associated A 35.0 1.4E+02 0.0049 23.6 7.1 37 13-49 13-49 (51)
309 2q28_A Oxalyl-COA decarboxylas 34.5 22 0.00076 43.5 3.9 106 977-1090 198-305 (564)
310 2yva_A DNAA initiator-associat 34.4 61 0.0021 33.1 6.8 107 977-1089 28-145 (196)
311 2pa8_D DNA-directed RNA polyme 34.4 9.2 0.00031 41.9 0.3 17 874-890 174-190 (265)
312 2pan_A Glyoxylate carboligase; 34.3 51 0.0017 40.7 7.1 109 977-1090 213-328 (616)
313 3trt_A Vimentin; cytoskeleton, 34.1 2.2E+02 0.0075 24.3 9.6 28 53-80 47-74 (77)
314 2dq0_A Seryl-tRNA synthetase; 33.7 1.4E+02 0.0048 35.1 10.4 24 800-825 183-206 (455)
315 3ghg_B Fibrinogen beta chain; 33.7 4.7E+02 0.016 30.4 14.2 27 196-222 163-189 (461)
316 2vpz_A Thiosulfate reductase; 33.5 37 0.0013 43.2 5.9 50 1192-1241 199-256 (765)
317 3l4q_C Phosphatidylinositol 3- 33.5 3.8E+02 0.013 26.8 20.0 46 165-210 93-138 (170)
318 3swf_A CGMP-gated cation chann 33.3 1.9E+02 0.0066 24.7 8.0 38 24-61 8-45 (74)
319 2yy0_A C-MYC-binding protein; 33.1 63 0.0022 25.8 4.9 32 17-48 20-51 (53)
320 3he5_A Synzip1; heterodimeric 32.8 1.5E+02 0.005 21.8 6.9 42 5-46 6-47 (49)
321 3nwc_A SMC protein; structural 32.7 21 0.00073 36.8 2.7 54 323-376 32-95 (189)
322 1gk4_A Vimentin; intermediate 32.2 2.6E+02 0.0088 24.5 12.7 43 580-622 32-74 (84)
323 3ml1_A NAPA, periplasmic nitra 32.1 39 0.0013 43.2 5.7 51 1192-1242 178-237 (802)
324 3n9z_C Adrenodoxin; cytochrome 32.0 9.9 0.00034 36.4 0.1 25 662-686 3-32 (123)
325 2e7z_A Acetylene hydratase AHY 31.9 34 0.0012 43.3 5.1 51 1192-1242 160-218 (727)
326 1vcs_A Vesicle transport throu 31.9 1.3E+02 0.0044 27.5 7.6 48 30-77 12-60 (102)
327 3qne_A Seryl-tRNA synthetase, 31.5 1.4E+02 0.0048 35.4 9.7 20 491-510 85-104 (485)
328 3cf4_G Acetyl-COA decarboxylas 31.5 54 0.0018 33.0 5.5 41 1113-1154 24-64 (170)
329 4dk0_A Putative MACA; alpha-ha 31.3 2.6E+02 0.009 31.4 12.2 17 259-275 161-177 (369)
330 2pgn_A Cyclohexane-1,2-dione h 31.2 39 0.0013 41.6 5.3 107 978-1090 193-305 (589)
331 4etp_A Kinesin-like protein KA 31.1 98 0.0034 35.9 8.4 50 573-622 9-58 (403)
332 2avr_X Adhesion A; antiparalle 30.9 3.4E+02 0.012 25.5 14.4 8 133-140 97-104 (119)
333 3hvz_A Uncharacterized protein 30.8 17 0.00057 31.7 1.3 25 663-687 6-31 (78)
334 2wt7_B Transcription factor MA 30.7 2.9E+02 0.0099 24.6 9.9 16 37-52 21-36 (90)
335 2ke4_A CDC42-interacting prote 30.7 3.1E+02 0.01 24.9 10.3 25 53-77 60-84 (98)
336 1gd2_E Transcription factor PA 30.5 63 0.0022 27.5 4.7 18 418-435 28-45 (70)
337 2gmh_A Electron transfer flavo 30.2 11 0.00037 46.5 0.1 39 874-914 519-558 (584)
338 2qih_A Protein USPA1; trimeric 30.0 3.7E+02 0.012 25.6 19.3 19 493-511 42-60 (157)
339 3u0c_A Invasin IPAB, 62 kDa an 29.9 3E+02 0.01 27.1 9.8 73 147-221 70-142 (201)
340 3c9i_A Tail needle protein GP2 29.7 4.6E+02 0.016 26.7 14.8 11 667-677 170-180 (242)
341 2ic9_A Nucleocapsid protein; h 29.3 2E+02 0.0068 25.8 7.8 14 459-472 54-67 (96)
342 1wle_A Seryl-tRNA synthetase; 29.2 1.6E+02 0.0055 35.1 9.9 9 1010-1018 360-368 (501)
343 3hhm_B NISH2 P85alpha; PI3KCA, 29.1 6.8E+02 0.023 28.4 18.7 54 169-222 199-252 (373)
344 2i2w_A Phosphoheptose isomeras 29.0 1.9E+02 0.0065 29.9 9.6 40 1048-1090 129-168 (212)
345 1s5p_A NAD-dependent deacetyla 28.9 53 0.0018 35.1 5.2 43 1047-1092 164-206 (235)
346 4fi5_A Nucleoprotein; structur 28.9 2E+02 0.007 26.4 8.0 15 459-473 71-85 (113)
347 4abx_A DNA repair protein RECN 28.9 4.5E+02 0.015 26.2 12.5 35 188-222 121-155 (175)
348 1ci6_A Transcription factor AT 28.9 2.5E+02 0.0084 23.2 8.1 31 418-448 22-52 (63)
349 1uix_A RHO-associated kinase; 28.8 2.7E+02 0.0092 23.6 9.7 58 53-111 2-65 (71)
350 3uux_B Mitochondrial division 28.7 3.2E+02 0.011 28.8 10.6 15 174-188 176-190 (242)
351 1ci6_A Transcription factor AT 28.6 1.3E+02 0.0045 24.8 6.4 29 417-445 28-56 (63)
352 3vp9_A General transcriptional 28.5 1E+02 0.0035 27.6 5.9 33 100-132 51-83 (92)
353 1ses_A Seryl-tRNA synthetase; 28.3 3.3E+02 0.011 31.6 12.3 12 1007-1018 301-312 (421)
354 2uz1_A Benzaldehyde lyase; thi 28.1 42 0.0015 40.9 4.8 108 977-1090 191-305 (563)
355 3tul_A Cell invasion protein S 28.0 3.1E+02 0.011 26.5 9.4 96 43-140 19-123 (158)
356 1ma3_A SIR2-AF2, transcription 28.0 48 0.0016 35.9 4.7 44 1047-1093 180-223 (253)
357 3fpp_A Macrolide-specific effl 27.9 1.3E+02 0.0044 33.7 8.7 17 259-275 160-176 (341)
358 3vp9_A General transcriptional 27.8 2.2E+02 0.0075 25.5 7.9 17 459-475 70-86 (92)
359 1m2k_A Silent information regu 27.8 73 0.0025 34.3 6.1 44 1047-1093 174-217 (249)
360 1x92_A APC5045, phosphoheptose 27.4 1.1E+02 0.0037 31.3 7.2 40 1047-1089 110-149 (199)
361 3m91_A Proteasome-associated A 27.3 2.1E+02 0.0073 22.6 6.9 40 404-445 10-49 (51)
362 3swf_A CGMP-gated cation chann 27.1 2.8E+02 0.0097 23.7 8.0 42 416-457 4-46 (74)
363 3okq_A BUD site selection prot 26.9 4.4E+02 0.015 25.5 17.1 77 19-95 17-94 (141)
364 2dq0_A Seryl-tRNA synthetase; 26.3 1.7E+02 0.0057 34.5 9.3 15 704-718 190-204 (455)
365 4b6x_A AVRRPS4, avirulence pro 26.1 3.1E+02 0.011 23.5 8.5 48 432-479 35-84 (90)
366 1m3s_A Hypothetical protein YC 25.9 2.1E+02 0.0072 28.6 9.1 90 978-1089 25-115 (186)
367 1tmo_A TMAO reductase, trimeth 25.8 43 0.0015 43.1 4.5 50 1192-1241 210-279 (829)
368 2k53_A A3DK08 protein; NESG, C 25.2 56 0.0019 28.2 3.7 34 718-751 23-56 (76)
369 3haj_A Human pacsin2 F-BAR; pa 25.1 8.8E+02 0.03 28.4 24.4 9 240-248 240-248 (486)
370 1jeo_A MJ1247, hypothetical pr 25.1 2.5E+02 0.0085 27.8 9.4 91 978-1090 28-119 (180)
371 1eu1_A Dimethyl sulfoxide redu 24.8 45 0.0015 42.5 4.4 50 1192-1241 177-242 (780)
372 3a7o_A Autophagy protein 16; c 24.6 3.1E+02 0.011 23.0 9.5 33 190-222 26-58 (75)
373 3g67_A Methyl-accepting chemot 24.5 6.1E+02 0.021 26.3 30.1 205 10-221 1-211 (213)
374 3ni0_A Bone marrow stromal ant 24.3 3.8E+02 0.013 23.9 11.9 11 224-234 73-83 (99)
375 4ad8_A DNA repair protein RECN 24.2 9.3E+02 0.032 28.4 20.0 6 371-376 466-471 (517)
376 2wt7_B Transcription factor MA 24.1 3.8E+02 0.013 23.8 10.1 11 136-146 26-36 (90)
377 1ozh_A ALS, acetolactate synth 24.0 1E+02 0.0036 37.4 7.3 115 1113-1235 197-320 (566)
378 2l32_A Small archaeal modifier 23.9 34 0.0012 29.4 2.0 30 665-694 3-35 (74)
379 3ghg_B Fibrinogen beta chain; 23.9 9E+02 0.031 28.1 15.6 35 199-234 159-193 (461)
380 1yc5_A NAD-dependent deacetyla 23.8 64 0.0022 34.7 4.7 44 1047-1093 177-220 (246)
381 3sho_A Transcriptional regulat 23.8 4.5E+02 0.015 26.0 11.2 27 1213-1239 114-140 (187)
382 3lay_A Zinc resistance-associa 23.7 4.7E+02 0.016 26.3 10.7 46 26-71 81-129 (175)
383 3u31_A SIR2A, transcriptional 23.6 62 0.0021 35.7 4.6 43 1047-1092 213-255 (290)
384 4feg_A Pyruvate oxidase; carba 23.3 82 0.0028 38.7 6.2 116 1113-1235 202-322 (603)
385 3hd7_B Syntaxin-1A; membrane p 23.2 4.4E+02 0.015 24.2 11.8 61 170-231 16-76 (109)
386 3k35_A NAD-dependent deacetyla 22.8 1.2E+02 0.004 34.0 6.6 44 1046-1092 202-245 (318)
387 3riy_A NAD-dependent deacetyla 22.8 69 0.0024 35.0 4.8 45 1046-1093 208-252 (273)
388 1jnm_A Proto-oncogene C-JUN; B 22.8 72 0.0025 26.3 3.7 28 420-447 23-50 (62)
389 2l5g_B Putative uncharacterize 22.5 2E+02 0.007 21.6 5.5 16 594-609 15-30 (42)
390 2dq3_A Seryl-tRNA synthetase; 22.5 1.6E+02 0.0054 34.4 8.0 23 800-824 162-184 (425)
391 3lss_A Seryl-tRNA synthetase; 22.4 3.2E+02 0.011 32.4 10.6 22 803-826 201-222 (484)
392 3cl3_D NF-kappa-B essential mo 22.4 3.8E+02 0.013 25.3 8.7 110 139-259 3-116 (130)
393 3glr_A NAD-dependent deacetyla 22.2 9.6 0.00033 42.1 -2.3 44 1045-1092 192-235 (285)
394 2x7j_A 2-succinyl-5-enolpyruvy 22.1 1.6E+02 0.0054 36.2 8.4 41 1112-1154 232-272 (604)
395 3swy_A Cyclic nucleotide-gated 22.0 2.8E+02 0.0096 21.5 7.3 36 7-42 3-38 (46)
396 1tk9_A Phosphoheptose isomeras 21.4 2E+02 0.0069 28.7 7.9 39 1048-1089 108-146 (188)
397 2p22_C Protein SRN2; endosome, 21.4 5.3E+02 0.018 26.4 10.7 143 471-617 41-187 (192)
398 2xv5_A Lamin-A/C; structural p 21.2 3.8E+02 0.013 22.9 8.0 49 574-622 5-53 (74)
399 2yy0_A C-MYC-binding protein; 21.2 1.1E+02 0.0037 24.5 4.2 31 403-435 19-49 (53)
400 2ap3_A Conserved hypothetical 21.2 6.8E+02 0.023 25.7 14.1 121 2-124 59-194 (199)
401 2pms_C Pneumococcal surface pr 21.0 5.3E+02 0.018 24.3 11.8 18 553-570 70-87 (125)
402 2vk8_A Pyruvate decarboxylase 21.0 51 0.0017 40.2 3.6 109 977-1090 198-313 (563)
403 1lwu_C Fibrinogen gamma chain; 20.7 2.1E+02 0.0071 32.0 8.0 16 904-920 100-115 (323)
404 1cii_A Colicin IA; bacteriocin 20.6 1E+03 0.035 27.4 26.7 63 553-617 358-420 (602)
405 2avr_X Adhesion A; antiparalle 20.5 5.3E+02 0.018 24.1 14.1 29 517-545 71-99 (119)
406 3sho_A Transcriptional regulat 20.4 1.4E+02 0.0047 30.0 6.3 97 978-1090 27-124 (187)
407 1g6u_A Domain swapped dimer; d 20.4 2.6E+02 0.0088 20.5 6.7 24 189-212 20-43 (48)
408 2ke4_A CDC42-interacting prote 20.3 3.3E+02 0.011 24.7 7.8 27 537-565 17-43 (98)
409 1vim_A Hypothetical protein AF 20.2 2.8E+02 0.0096 28.2 8.7 90 978-1089 35-125 (200)
410 2w6a_A ARF GTPase-activating p 20.1 3.5E+02 0.012 21.9 7.9 43 3-45 14-56 (63)
411 3hww_A 2-succinyl-5-enolpyruvy 20.1 1.2E+02 0.0042 36.7 6.7 93 990-1090 220-313 (556)
412 1nfn_A Apolipoprotein E3; lipi 20.1 5.7E+02 0.019 26.0 10.8 20 66-85 70-89 (191)
No 1
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=100.00 E-value=7.3e-98 Score=961.09 Aligned_cols=572 Identities=27% Similarity=0.431 Sum_probs=485.8
Q ss_pred cEEEEECCEEEEeCCCCcchh------------------------------h---------------------------h
Q psy11935 664 KFEVFIDDKKVMVDPGTTVLQ------------------------------P---------------------------V 686 (1334)
Q Consensus 664 ~~~~~idg~~~~v~~g~til~------------------------------~---------------------------~ 686 (1334)
||+|+|||++|+||+|+|||+ . +
T Consensus 1 mv~i~idg~~~~v~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~~~~~~~~g~~~~~~~G~~~~~~~~~~~ 80 (783)
T 3i9v_3 1 MVRVKVNDRIVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPKKGPDGKPLLNEKGEPEIQWQPKLA 80 (783)
T ss_dssp CEEEECSSCEEEECTTCBHHHHHHHTTCCCCCSSCCTTSCCCCCSCCSEEEEECC-----------------CCBCSSCE
T ss_pred CeEEEECCEEEEeCCCChHHHHHHHhCCCccccCCCCCCCCCcccCCcEEEecccccccccccccccccccccccCCCcc
Confidence 799999999999999999999 2 1
Q ss_pred hhhcCCCCCCCEEEcCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCchhhhHHHhCCCCCccccc--------ccC-C
Q psy11935 687 AACAMPVMKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFTDI--------DFS-G 757 (1334)
Q Consensus 687 ~ac~~~~~~gm~v~t~s~~~~~~r~~~~~~ll~~hp~~C~~c~~~g~c~lq~~~~~~g~~~~~~~~~--------~~~-~ 757 (1334)
+||+|||.+||+|.|+||++.++|+.+|||||.|||+|||+||++|+|+|||+++.||+...+|... .|. .
T Consensus 81 ~aC~t~v~~gm~v~t~~~~~~~~r~~~le~ll~nhp~dC~~C~~~g~C~Lq~~~~~~g~~~~~~~~~~~~~p~~~r~~~~ 160 (783)
T 3i9v_3 81 ASCVTAVADGMVVDTLSDVVREAQAGMVEFTLLNHPLDCPTCDKGGACELQDRTVEYGLYEKYYQKGPLELPVYTRFEFT 160 (783)
T ss_dssp ETTTCBCCSSEEEESSSHHHHHHHHHHHHHHHTSCCCCTTTCTTGGGCHHHHHHHHHCSCCCC------CCCCCCCCCSC
T ss_pred cccCCCCCCCCEEEECCHHHHHHHHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHHhCCccccccccccccccccccccc
Confidence 3999999999999999999999999999999999999999999999999999999999954433210 000 2
Q ss_pred CCCccchhhhhhccCCCCcccccceeec-CCCcccccccccCCCCcEEEcCCHHHHHHHHHHHHHHhhCCCCCCcccccC
Q psy11935 758 KSGTYTRVTRQRSWGLIPSRVFLQSINR-HWIGPVAACAMPVMKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQG 836 (1334)
Q Consensus 758 ~~~~~~~~~~~~~~~~ip~lc~~~~v~~-~~~~~~~aC~~~v~~gm~i~t~s~~~r~~r~~~~~~ll~~h~~~C~~C~~~ 836 (1334)
++ .++. ...+|. |.. ++.+| |.|++|
T Consensus 161 k~----------------------~~~~~~~~~p~------------i~~--d~~~C--------------I~C~~C--- 187 (783)
T 3i9v_3 161 RR----------------------HVDKHHPLSPF------------VIL--DRERC--------------IHCKRC--- 187 (783)
T ss_dssp CC----------------------CCCCSEEEETT------------EEE--CTTTC--------------CCCCHH---
T ss_pred cc----------------------cCCcccCCCcc------------EEE--chhhC--------------CCccHH---
Confidence 22 1111 122455 777 78889 999888
Q ss_pred CccchhhhhcccCccccccCCCCCceeccccccccccccccccccccccccccccCCcccCCCCcceeeeeecccCCCCC
Q psy11935 837 GECDLQDQSMAFGNDLGTTGRGSDMQVGTYVEKLFLSELSGNVIDLCPVGALTSKPYSFTARPWETRKTESVDVLDAVGS 916 (1334)
Q Consensus 837 g~c~~~~~e~~g~~~~~~~~rg~~~~i~~~~~~~~~~~~cg~cv~~CpvGAl~~k~~~~~~r~we~~~~~s~c~~C~~gC 916 (1334)
+++|.++++..++++.+||.+..|++. +.++.|++||+|+++||||||+++++.|++|+|+++.++|+|++|+.||
T Consensus 188 ---v~~C~~~~~~~~i~~~~~g~~~~i~~~-~~~~~C~~CG~Cv~vCP~gAl~~~~~~~~~r~w~~~~~~s~C~~C~~gC 263 (783)
T 3i9v_3 188 ---VRYFEEVPGDEVLDFIERGVHTFIGTM-DFGLPSGFSGNITDICPVGALLDLTARFRARNWEMEETPTTCALCPVGC 263 (783)
T ss_dssp ---HHHHHHTTCCCCCEECSCTTSCCEECS-STTCCSTTTTTHHHHCSSSSEEEGGGTTSCCTTTSEEEEEECCSSSSCC
T ss_pred ---HHHhhhhcCCceeeeecCCCccEEccC-CCCCCCccchhHHhhcccCceeccccccccccccceEEEEeCCCCCCcc
Confidence 999999999999999999999888774 3456899999999999999999999999999999999999999999999
Q ss_pred ceEEEeeCCEEEEecCCCCCCCCccccccccccccccccccccCCceEecCCCCeeecCHHHHHHHHHHHhcc---CCEE
Q psy11935 917 NIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGLKRQRLLTPFVRNCDGQLVATEWEDALIAVAQKLQT---SEVA 993 (1334)
Q Consensus 917 ~i~v~v~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l~~~Rl~~PliR~~~g~~~~iSWdeAl~~ia~~L~~---~~i~ 993 (1334)
++.+++++|+|+||+|++++|+|+||+|+||||++++++.+||++||+|.+ |+|+++||||||+.||++|++ ++++
T Consensus 264 ~i~v~v~~g~v~rv~~~~~~p~n~g~lC~kGr~~~~~~~~dRL~~Pl~R~~-G~~~~iSWdeAl~~ia~~L~~i~~~~i~ 342 (783)
T 3i9v_3 264 GITADTRSGELLRIRAREVPEVNEIWICDAGRFGHEWADQNRLKTPLVRKE-GRLVEATWEEAFLALKEGLKEARGEEVG 342 (783)
T ss_dssp EEEEEEETBEEEEEEECCCTTSSCSCCCHHHHHTTTTTTTSCCCSCEEESS-SSEEECCHHHHHHHHHHHHHTCCTTSEE
T ss_pred cceeeeECCEEEeccCCCCCCCCCCccChhhhhHhhhhhhccccCceEccC-CceeEeCHHHHHHHHHHHHHhhccCCEE
Confidence 999999999999999999999999999999999999995599999999985 999999999999999999998 6899
Q ss_pred EEeCCcCCHHHHHHHHHHHHHhCCCccccCCCCCcchhhhhhhhhccCCCCcccccccCeEEEEcCCccccchhHHHHHH
Q psy11935 994 GVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIR 1073 (1334)
Q Consensus 994 ~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~die~ad~Il~~G~np~~~~p~~~~rir 1073 (1334)
+++|+..++|+.|++++|++.||++|+++....|.... .+.+.++.|+++||+||+|| ||.+++|+++.|++
T Consensus 343 ~~~s~~~t~E~~~~~~kl~~~lGt~n~d~~~~~~~~~~-------~~~~~~~~di~~ad~Il~~G-Np~~~~P~~~~rlr 414 (783)
T 3i9v_3 343 LYLAHDATLEEGLLASELAKALKTPHLDFQGRTAAPAS-------LFPPASLEDLLQADFALVLG-DPTEEAPILHLRLS 414 (783)
T ss_dssp EEECTTCCTTHHHHHHHHHHHTTCSCEEETTCCSSCGG-------GSCBCCHHHHHHCSCEEEES-CHHHHSTHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHhCCCcccCCchhhhhhc-------cCCCCCHHHHhhCCEEEEeC-ChhHhCcHHHHHHH
Confidence 99999999999999999999999999988766664321 23467899999999999999 99999999999999
Q ss_pred HHHh------------------------hCCCeEEEEccCCCCcccccc------CCCcHHHHHHHHhc------HHHHH
Q psy11935 1074 KGYL------------------------TNELDVAYIGPKVDLRYDYEH------LGESADLIKQLASG------SHPFS 1117 (1334)
Q Consensus 1074 ~a~~------------------------~~g~kiivIdp~~~~t~~~a~------~Gtd~a~l~~l~~g------~~~~A 1117 (1334)
++.+ ++|++|++|||+.+.++..++ ||+|.+++.+++.. +.++|
T Consensus 415 ~a~~~~~~~~~~~~g~~~~~~~v~~~~~~~g~klividPr~t~ta~~Ad~~l~i~PGtD~all~al~~~li~~e~i~~~A 494 (783)
T 3i9v_3 415 EFVRDLKPPHRYNHGTPFADLQIKERMPRRTDKMALFAPYRAPLMKWAAIHEVHRPGEEREILLALLGDKEGSEMVAKAK 494 (783)
T ss_dssp HHHTTCCCCCCBTTBSCSSCTTCCTTCCCCTTSEEEEESSCCGGGTTCSEEEECCSSCHHHHHHHHHTSSCCCHHHHHHH
T ss_pred HHHHhcccchhhcccccchhhhhhhhhhcCCCEEEEEeCCcchhhHhhcceEecCCCcHHHHHHHHHHhccCHHHHHHHH
Confidence 9863 578999999999999887764 99999999999754 57899
Q ss_pred HHHhcCCCcEEEEcCCc-ccHHHHHHHHHHHHHhhcCCCCCCCCCcccccchhhhhhhhhhhcCCCcchh--hHh-cCCC
Q psy11935 1118 KKLSAAKKPLIVVGADI-SDGAAVLALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAALDIGYKPGTS--AIR-EKPP 1193 (1334)
Q Consensus 1118 ~~l~~a~~~~ii~G~~~-~~g~~~~~al~~l~~~~g~~Gg~~~~~~~~~~l~~~~n~~G~~~~g~~pg~~--~i~-~g~i 1193 (1334)
+.|+++++++|++|.++ .+..... ++..|++++| .+++++++.+|.+|+.++|+.|+.. .+. .| +
T Consensus 495 ~~la~a~~~~I~~G~g~~~~~~~~~-~~~~l~g~~G---------~g~~~l~~~~N~~Ga~~~G~~p~~~g~~~~~~g-i 563 (783)
T 3i9v_3 495 EAWEKAKNPVLILGAGVLQDTVAAE-RARLLAERKG---------AKVLAMTPAANARGLEAMGVLPGAKGASWDEPG-A 563 (783)
T ss_dssp HHHHHCSSCEEEECSHHHHCHHHHH-HHHHHHHHTT---------CCEEECCSSTTHHHHHHHTCSCCSSCCCTTSCC-C
T ss_pred HHHHhCCCcEEEECchhhhcHHHHH-HHHHHhcccC---------CCeeeccCcchhhhhhhcCCCCCchhhhhhcCC-C
Confidence 99999999999999998 2221122 2223777765 2366778888999999999887532 111 46 9
Q ss_pred cEEEEECCChhhhHHhhcCCCceEEEEcCCCChhh-ccccEEecCCCCCCCCcccccCCCceEEeccccCCCCCcccHHH
Q psy11935 1194 KVLFLLGADEGSISRDDVGKDCFIIYQGHHGDHGA-SIADAILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPGLAREDWK 1272 (1334)
Q Consensus 1194 k~l~~~g~np~~~~~~al~k~~fvV~~d~~~~eta-~~ADvVLP~a~~~Ek~Gt~~n~egrvq~~~~av~P~gear~dw~ 1272 (1334)
|++|++|.||... |++++|+|++|+|+|+|+ .+||||||+++|+|++|||+|++|++|.++++++|+|++|+||+
T Consensus 564 kal~v~g~np~~~----L~~~~fvVv~d~~~t~ta~~~ADvvLP~a~~~E~~gt~~n~eg~~~~~~~~v~p~ge~r~d~~ 639 (783)
T 3i9v_3 564 LYAYYGFVPPEEA----LKGKRFVVMHLSHLHPLAERYAHVVLPAPTFYEKRGHLVNLEGRVLPLSPAPIENGEAEGALQ 639 (783)
T ss_dssp SEEEESSCCCHHH----HTTCSEEEECCSSCCTTTTTTCSEECCCCCGGGCCEEEECTTSBEEEECCCCBCCCSCCCHHH
T ss_pred eEEEEeCCCHHHH----HhhCCEEEEEeCcCCchhhhCCcEEecCCcccccCCeEEccCCcEEEeccccCCCCCCccHHH
Confidence 9999999999643 899999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCC-------------------CCccc------cccccccccccchhhhchHHHHHh
Q psy11935 1273 IIRALSEGVSSNLSS-------------------EPVDV------KQKNLEDYYMTDPISRASGTMAKC 1316 (1334)
Q Consensus 1273 Il~~La~~lg~~~~~-------------------~~~~~------~~~~~~~~y~td~i~r~s~~m~~~ 1316 (1334)
||+.||++||..... ..+.+ +...-.++|++|+..|++..++..
T Consensus 640 il~~La~~lG~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 708 (783)
T 3i9v_3 640 VLALLAEALGVRPPFRLHLEAQKALKARKVPEAMGRLSFRLKELRPKERKGAFYLRPTMWKAHQAVGKA 708 (783)
T ss_dssp HHHHHHHTTSSCCSCCSHHHHHHHHHHHTCCCTTCBCCCCCCCCCCCCCCTTEEEEECSSCGGGCSTTH
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHhccCccccCccCCCCCcCCCCCCCCceeecccceecccccchh
Confidence 999999999921110 00000 001124899999999988665433
No 2
>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A*
Probab=100.00 E-value=3.2e-58 Score=592.64 Aligned_cols=373 Identities=20% Similarity=0.306 Sum_probs=320.8
Q ss_pred ceeeeeecccCCCCCceEEEeeCCEEEEecCCCCCCCCccccccccccccccc-ccc----ccCCceEecC-CCCeeecC
Q psy11935 902 TRKTESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGL-KRQ----RLLTPFVRNC-DGQLVATE 975 (1334)
Q Consensus 902 ~~~~~s~c~~C~~gC~i~v~v~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l-~~~----Rl~~PliR~~-~g~~~~iS 975 (1334)
|+.++|+|++|++||++.|++++|+|+||+|+++ |+|+||+|+||+++++.+ +|+ ||++||+|.+ +|+|++||
T Consensus 1 ~~~~~t~C~~C~~gC~i~v~v~~g~v~~v~g~~~-p~n~g~lC~kg~~~~~~~~~p~~~~~Rl~~Pl~R~~~~g~~~~is 79 (715)
T 2iv2_X 1 MKKVVTVCPYCASGCKINLVVDNGKIVRAEAAQG-KTNQGTLCLKGYYGWDFINDTQILTPRLKTPMIRRQRGGKLEPVS 79 (715)
T ss_dssp CEEEEEECSSBTTCCEEEEEEETTEEEEEEECCC-TTTTTCCCHHHHHTTGGGGCCCSSSCBCCSCEECCSTTSCCEECC
T ss_pred CcEEEEECCCCCCCCCeEEEEECCEEEEEEeCCC-CCCCCCcChhhHHHHHHhcCccccchhccCCeEecCCCCCEEEee
Confidence 4789999999999999999999999999999999 999999999999999998 599 9999999974 38999999
Q ss_pred HHHHHHHHHHHhcc-------CCEEEEeCCcCC-HHHHHHHHHHHH-HhCCCccccCCCCCcchhhhhhhhhcc---CCC
Q psy11935 976 WEDALIAVAQKLQT-------SEVAGVVGSLAD-AEAMVALKDLLN-KLGSEDLYTEYAFPLEGAGTDLRANYL---LNN 1043 (1334)
Q Consensus 976 WdeAl~~ia~~L~~-------~~i~~~~g~~~~-~e~~~~~~~l~~-~lGs~~~~~~~~~~~~~~~~~~~~~~~---~~~ 1043 (1334)
|||||+.||++|++ ++|++++|+..+ +|..+++++|++ .+|++|+++..++|+.+...++...|| ++.
T Consensus 80 WdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~e~~~~~~~~~~~~~Gs~n~~~~~~~c~~~~~~~~~~~~G~~~~~~ 159 (715)
T 2iv2_X 80 WDEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETNYVMQKFARAVIGTNNVDCCARVXHGPSVAGLHQSVGNGAMSN 159 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGEEEECCSSTTCHHHHHHHHHHHHHTTCCCCEECSSCCSCCSSSCSHHHHHSCCSCSS
T ss_pred HHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCcCcHHHHHHHHHHHHhcCCCcCCCCCccchhHHHHHHHhhcCCCCCCC
Confidence 99999999999987 578888888888 999999999998 999999999888898765445554544 357
Q ss_pred CcccccccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCCCCcccccc------CCCcHHHHHHHHh------
Q psy11935 1044 KIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEH------LGESADLIKQLAS------ 1111 (1334)
Q Consensus 1044 ~~~die~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~~~t~~~a~------~Gtd~a~l~~l~~------ 1111 (1334)
++.|+++||+||+||+||..++|+++.+++++. ++|+|||+|||+.+.|+..++ ||||.+|+.+|+.
T Consensus 160 ~~~di~~ad~il~~G~n~~~~~p~~~~~l~~a~-~~G~klividPr~t~ta~~Ad~~l~irPGtD~aL~~al~~~ii~~~ 238 (715)
T 2iv2_X 160 AINEIDNTDLVFVFGYNPADSHPIVANHVINAK-RNGAKIIVCDPRKIETARIADMHIALKNGSNIALLNAMGHVIIEEN 238 (715)
T ss_dssp CGGGGGGCSEEEEESCCHHHHCHHHHHHHHHHH-HTTCEEEEECSSCCHHHHTCSEEECCCTTCHHHHHHHHHHHHHHTT
T ss_pred CHhHHhcCCEEEEEcCChHHhCHHHHHHHHHHH-HCCCeEEEEcCCCCchhHhhCEEeccCCCcHHHHHHHHHHHHHHCC
Confidence 899999999999999999999999999999985 689999999999999987765 9999998877641
Q ss_pred ---------------------------------c-----HHHHHHHHhcCCCcEEEEcCCc---ccHHHHHHHHHHHHHh
Q psy11935 1112 ---------------------------------G-----SHPFSKKLSAAKKPLIVVGADI---SDGAAVLALVQQLAAK 1150 (1334)
Q Consensus 1112 ---------------------------------g-----~~~~A~~l~~a~~~~ii~G~~~---~~g~~~~~al~~l~~~ 1150 (1334)
| |+++|+.|+++++++|++|+|+ .+|....+++..|+..
T Consensus 239 l~D~~fl~~~t~gf~~l~~~v~~~tpe~~a~itGv~~~~I~~lA~~~a~a~~~~i~~g~g~~~~~~g~~~~~a~~~L~~l 318 (715)
T 2iv2_X 239 LYDKAFVASRTEGFEEYRKIVEGYTPESVEDITGVSASEIRQAARMYAQAKSAAILWGMGVTQFYQGVETVRSLTSLAML 318 (715)
T ss_dssp CSCHHHHHHHEECHHHHHHHHHTCCSGGGHHHHCCCHHHHHHHHHHHHHSSSEEEEEETTGGGSSSHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHCcCHHHHHHHHHHHHhCCCeEEEEcccccccccHHHHHHHHHHHHHH
Confidence 1 5678999999999999999987 6788777776666555
Q ss_pred h---cCCCCCCCCCcccccchhhhhhhhhhhcCC-------------------------------Ccc------hhhHhc
Q psy11935 1151 V---TCESDVPCDWKVLNILQKAASQVAALDIGY-------------------------------KPG------TSAIRE 1190 (1334)
Q Consensus 1151 ~---g~~Gg~~~~~~~~~~l~~~~n~~G~~~~g~-------------------------------~pg------~~~i~~ 1190 (1334)
+ |++|+ +++++++.+|.+|+.++|. .|| ++++..
T Consensus 319 ~G~ig~~Gg------g~~~~~~~~n~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~i~~ 392 (715)
T 2iv2_X 319 TGNLGKPHA------GVNPVRGQNNVQGACDMGALPDTYPGYQYVKDPANREKFAKAWGVESLPAHTGYRISELPHRAAH 392 (715)
T ss_dssp TTCSSSTTC------SEEEECSBTTHHHHHHTTCBTTEEGGGEETTCHHHHHHHHHHTTCSCCCCSCCCCGGGHHHHHHT
T ss_pred hCCCCCCCC------ccCCCccccccccccccCcCcCCCCccccCCCHHHHHHHHHHhCCCcCCCCCCCCHHHHHHHHHc
Confidence 5 45543 2444444455555544432 122 234567
Q ss_pred CCCcEEEEECCChhhh------HHhhcCCCceEEEEcCCCChhhccccEEecCCCCCCCCcccccCCCceEEeccccCCC
Q psy11935 1191 KPPKVLFLLGADEGSI------SRDDVGKDCFIIYQGHHGDHGASIADAILPGAAYTEKQSTYVNTEGRAQQTLTAVTPP 1264 (1334)
Q Consensus 1191 g~ik~l~~~g~np~~~------~~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~Gt~~n~egrvq~~~~av~P~ 1264 (1334)
|++|++|++|+||+.. ..++|++++|+|++|+|+|+|+.+||||||+++|+|++|+|+|.+|+++.++|+|+|+
T Consensus 393 g~ik~l~~~g~Np~~~~p~~~~~~~al~~~d~~V~~d~~~teTa~~ADvvLP~~~~~E~~g~~~~~~~~~~~~~~~v~P~ 472 (715)
T 2iv2_X 393 GEVRAAYIMGEDPLQTDAELSAVRKAFEDLELVIVQDIFMTKTASAADVILPSTSWGEHEGVFTAADRGFQRFFKAVEPK 472 (715)
T ss_dssp TSCCEEEEESCCHHHHSSSHHHHHHHHHHSSEEEEEESBCCHHHHTCSEEEEBCCBTTBCEEEECTTSEEEEECCCSCCS
T ss_pred CCceEEEEeCCChhhcCcCHHHHHHHHhCCCeEEEEecccCcchhcCcEEccCCccccCCCcEeCCCceEEEEecccCCC
Confidence 8999999999999652 4788999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhc
Q psy11935 1265 GLAREDWKIIRALSEGVS 1282 (1334)
Q Consensus 1265 gear~dw~Il~~La~~lg 1282 (1334)
|++|+||+|+++||++||
T Consensus 473 ge~r~d~~Il~~La~~lg 490 (715)
T 2iv2_X 473 WDLKTDWQIISEIATRMG 490 (715)
T ss_dssp SSCBCHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHHhC
Confidence 999999999999999998
No 3
>3ml1_A NAPA, periplasmic nitrate reductase; heterodimer, oxidoreductase; HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_A* 1ogy_A* 2nya_A*
Probab=100.00 E-value=1.3e-58 Score=597.59 Aligned_cols=378 Identities=16% Similarity=0.205 Sum_probs=316.0
Q ss_pred CCcceeeeeecccCCCCCceEEEeeCCEEEEecCCCCCCCCccccccccccccccc-cccccCCceEecC------CCCe
Q psy11935 899 PWETRKTESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGL-KRQRLLTPFVRNC------DGQL 971 (1334)
Q Consensus 899 ~we~~~~~s~c~~C~~gC~i~v~v~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l-~~~Rl~~PliR~~------~g~~ 971 (1334)
+-++++++|+|++|++||++.|+|++|+|++|.|++++|+|.|++|+||+++++.+ +|+||++||+|.+ +|+|
T Consensus 9 ~~~~~~~~t~C~~C~~gC~i~v~v~~g~iv~v~g~~~~p~n~G~lC~KG~~~~~~~~~p~Rl~~Pl~R~~~G~~~~~g~~ 88 (802)
T 3ml1_A 9 VTKLKWSKAPCRFCGTGCGVTVAVKDNKVVATQGDPQAEVNKGLNCVKGYFLSKIMYGQDRLTRPLMRMKNGKYDKNGDF 88 (802)
T ss_dssp CCSSEEEEEECSSCTTCCEEEEEEETTEEEEEEECTTCTTTTTCCCHHHHTGGGTTCBTTCCCSCEEEEETTEECTTSEE
T ss_pred CCCCeEEeEECCCCCCCCCeEEEEECCEEEEEEcCCCCCCcCcccChhhhhHHhhhcCcchhcCCeEeccCCCCCcCCCe
Confidence 34578999999999999999999999999999999999999999999999999999 5999999999963 4899
Q ss_pred eecCHHHHHHHHHHHhcc-------CCEEEEeCCcCCHHHHHHHHHHHH-HhCCCccccCCCCCcchhhhhhhhhccC--
Q psy11935 972 VATEWEDALIAVAQKLQT-------SEVAGVVGSLADAEAMVALKDLLN-KLGSEDLYTEYAFPLEGAGTDLRANYLL-- 1041 (1334)
Q Consensus 972 ~~iSWdeAl~~ia~~L~~-------~~i~~~~g~~~~~e~~~~~~~l~~-~lGs~~~~~~~~~~~~~~~~~~~~~~~~-- 1041 (1334)
++|||||||+.||++|++ ++|++++++..++|+.|++++|++ .+|++|+++..++|+.+...++...||.
T Consensus 89 ~~isWdeAl~~ia~~l~~i~~~~G~~si~~~~sg~~~~e~~~~~~kl~~~~~gt~n~d~~~~~c~~~~~~~~~~~~G~~~ 168 (802)
T 3ml1_A 89 APVTWDQAFDEMERQFKRVLKEKGPTAVGMFGSGQWTVWEGYAAAKLYKAGFRSNNIDPNARHCMASAAAGFMRTFGMDE 168 (802)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHTCGGGEEEEECTTSCHHHHHHHHHHHHTTTCCCCEEEGGGGTTHHHHHHHHHHHSSCS
T ss_pred EEeCHHHHHHHHHHHHHHHHHhcCCCeEEEEeCCCCchHHHHHHHHHHHhhcCCccccCCcccchhhHHHhhHhhcCCCC
Confidence 999999999999999986 679888889999999999999997 5999999988889987665666666653
Q ss_pred -CCCcccccccCeEEEEcCCccccchhHHHHHHHHHh-hCCCeEEEEccCCCCcccccc------CCCcHHHHHHHH---
Q psy11935 1042 -NNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYL-TNELDVAYIGPKVDLRYDYEH------LGESADLIKQLA--- 1110 (1334)
Q Consensus 1042 -~~~~~die~ad~Il~~G~np~~~~p~~~~rir~a~~-~~g~kiivIdp~~~~t~~~a~------~Gtd~a~l~~l~--- 1110 (1334)
+.++.|+++||+||+||+||.+++|+++.+++++.+ ++|+|||||||+++.|+..++ ||||.+|+.+|+
T Consensus 169 ~~~~~~d~~~ad~il~~G~N~~~~~p~~~~~i~~a~~~~~G~klivIDPr~t~ta~~AD~~l~irPGtD~aL~~~m~~~i 248 (802)
T 3ml1_A 169 PMGCYDDFEAADAFVLWGSNMAEMHPILWTRVTDRRLSHPKTRVVVLSTFTHRCFDLADIGIIFKPQTDLAMLNYIANYI 248 (802)
T ss_dssp CSSCGGGGGTCSEEEEESCCHHHHSHHHHHHHHHHHHHSTTCEEEEEESSBCGGGGTCSEEEECCTTTHHHHHHHHHHHH
T ss_pred CCCCHHHHhhCCEEEEECCChHHhChHHHHHHHHHHHhcCCCEEEEEeCCCCchhHHhccEeccCCCHHHHHHHHHHHHH
Confidence 357899999999999999999999999999988764 479999999999999988775 999999987663
Q ss_pred ---------------h----------------------------------c--------------------------HHH
Q psy11935 1111 ---------------S----------------------------------G--------------------------SHP 1115 (1334)
Q Consensus 1111 ---------------~----------------------------------g--------------------------~~~ 1115 (1334)
. | |++
T Consensus 249 i~e~l~D~~Fv~~~t~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~gfe~l~~~v~~~tpe~~a~itGv~~~~I~~ 328 (802)
T 3ml1_A 249 IRNNKVNKDFVNKHTVFKEGVTDIGYGLRPDHPLQKAAKNASDPGAAKVITFDEFAKFVSKYDADYVSKLSAVPKAKLDQ 328 (802)
T ss_dssp HHTTCCCHHHHHHHEEEEEECCCCCCSCCTTSHHHHHCSSTTSTTCEEEECHHHHHHHHHTSCHHHHHHHHTCCHHHHHH
T ss_pred HHCCCcCHHHHHHhhcccccccccccccccccccccccccccccccccCCcHHHHHHHHhhCCHHHHHHHHCcCHHHHHH
Confidence 2 5 345
Q ss_pred HHHHHhcCCC-cEEEEcCCc---ccHHHHHHH---HHHHHHhhcCCCCCCCCCcccccchhhhhhhhh-hh---------
Q psy11935 1116 FSKKLSAAKK-PLIVVGADI---SDGAAVLAL---VQQLAAKVTCESDVPCDWKVLNILQKAASQVAA-LD--------- 1178 (1334)
Q Consensus 1116 ~A~~l~~a~~-~~ii~G~~~---~~g~~~~~a---l~~l~~~~g~~Gg~~~~~~~~~~l~~~~n~~G~-~~--------- 1178 (1334)
+|+.|+++++ +++++|+|. .+|.+..++ |+.|+|++|++||+ ++++.+..|.+|. .+
T Consensus 329 lA~~~a~~~~~~~~~~~~G~~q~~~G~~~~~ai~~L~~ltGnig~pGgg------~~~~~g~~n~~G~~~~~g~~~~~lp 402 (802)
T 3ml1_A 329 LAELYADPNIKVMSLWTMGFNQHTRGTWANNMVYNLHLLTGKIATPGNS------PFSLTGQPSACGTAREVGTFSHRLP 402 (802)
T ss_dssp HHHHHHCTTSCEEEEESHHHHSSTTHHHHHHHHHHHHHHHTCCSBTTBE------EEECCCSTTTTTTHHHHTCSTTBCS
T ss_pred HHHHHHhcCCCEEEEecccccccchHHHHHHHHHHHHHHhCCCCCCCCC------cCCCCCCCcccccccccccCcccCC
Confidence 7899998654 567788776 567765554 55566677777643 1222222222221 01
Q ss_pred ------------------------cCCCcc------hhhHhcCCCcEEEEECCChhhh-------HHhhcCCCc-eEEEE
Q psy11935 1179 ------------------------IGYKPG------TSAIREKPPKVLFLLGADEGSI-------SRDDVGKDC-FIIYQ 1220 (1334)
Q Consensus 1179 ------------------------~g~~pg------~~~i~~g~ik~l~~~g~np~~~-------~~~al~k~~-fvV~~ 1220 (1334)
+...|| ++++..|+||++|++|+||+.. ..++|.+++ |+|++
T Consensus 403 ~~~~~~~~~~~~~~~~~w~~p~~~~~~~~g~~~~~~~~~~~~g~ik~l~i~g~Np~~s~p~~~~~~~~al~~~~~f~Vv~ 482 (802)
T 3ml1_A 403 ADMVVTNPKHREEAERIWKLPPGTIPDKPGYDAVLQNRMLKDGKLNAYWVQVNNNMQAAANLMEEGLPGYRNPANFIVVS 482 (802)
T ss_dssp TTCBTTCHHHHHHHHHHTTCCTTCSCSSCCCCHHHHHHHHHHTSCCEEEEESCCHHHHSSCTTTTHHHHHHCTTCEEEEE
T ss_pred CCccCCCHHHHHHHHHHhCCCccccCCCCCCCHHHHHHHhhcCCcEEEEEeCCCHHhcCCCccHHHHHHHhcCCCeEEEE
Confidence 111233 2456789999999999999652 467888887 99999
Q ss_pred cCCCChhhccccEEecCCCCCCCCcccccCCCceEEeccccCCCCCcccHHHHHHHHHHHhc
Q psy11935 1221 GHHGDHGASIADAILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPGLAREDWKIIRALSEGVS 1282 (1334)
Q Consensus 1221 d~~~~eta~~ADvVLP~a~~~Ek~Gt~~n~egrvq~~~~av~P~gear~dw~Il~~La~~lg 1282 (1334)
|+|+|+||.+||||||+++|+|++|+|+|+++++|..+++|+|+|++|+||||+.+||++||
T Consensus 483 D~~~teTa~~ADivLPaa~~~Ek~g~~~n~~r~v~~~~~~v~P~gear~D~~I~~~La~rlG 544 (802)
T 3ml1_A 483 DAYPTVTALAADLVLPSAMWVEKEGAYGNAERRTQFWHQLVDAPGEARSDLWQLVEFAKRFK 544 (802)
T ss_dssp ESSCCHHHHTCSEEEEEECGGGSCEEEECTTSEEEEECCCSCCSTTCEEHHHHHHHHHTTCB
T ss_pred eeccCchHhhCcEEECCCCccccCceeecccceEEEeccCcCCCcCCCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999
No 4
>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A*
Probab=100.00 E-value=3.9e-57 Score=584.12 Aligned_cols=375 Identities=17% Similarity=0.250 Sum_probs=318.1
Q ss_pred ceeeeeecccCCCCCceEEEeeCCEEEEecCCCCCCCCccccccccccccccc-cccccCCceEec-CCCCeeecCHHHH
Q psy11935 902 TRKTESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGL-KRQRLLTPFVRN-CDGQLVATEWEDA 979 (1334)
Q Consensus 902 ~~~~~s~c~~C~~gC~i~v~v~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l-~~~Rl~~PliR~-~~g~~~~iSWdeA 979 (1334)
.++++|+|++|++||++.|++++|+|+||+|++++| |+||+|+||+++++.+ +|+||++||+|. ++|+|++||||||
T Consensus 6 ~~~~~t~C~~C~~gC~i~v~v~~g~v~~v~g~~~~p-n~g~lC~kg~~~~~~~~~p~Rl~~Pl~R~~~~g~~~~isWdeA 84 (723)
T 2nap_A 6 EKWVKGVCRYCGTGCGVLVGVKDGKAVAIQGNPNNH-NAGLLCLKGSLLIPVLNSKERVTQPLVRRHKGGKLEPVSWDEA 84 (723)
T ss_dssp SEEEEEECSSCTTCCEEEEEEETTEEEEEEECTTST-TTTCCCHHHHTCHHHHTCSCSCCSCEECSSTTSCCEECCHHHH
T ss_pred ceEEeEECCCCCCCCcEEEEEECCEEEEEEeCCCCC-CCCccchhHhhhHHhhcCchhhccCEeccCCCCCEEEecHHHH
Confidence 367999999999999999999999999999999999 9999999999999998 599999999995 3589999999999
Q ss_pred HHHHHHHhcc-------CCEEEEeCCcCCHHHHHHHHHHHHH-hCCCccccCCCCCcchhhhhhhhhcc---CCCCcccc
Q psy11935 980 LIAVAQKLQT-------SEVAGVVGSLADAEAMVALKDLLNK-LGSEDLYTEYAFPLEGAGTDLRANYL---LNNKIAGA 1048 (1334)
Q Consensus 980 l~~ia~~L~~-------~~i~~~~g~~~~~e~~~~~~~l~~~-lGs~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~di 1048 (1334)
|+.||++|++ +++++++|+..++|..+++++|++. +|++|+++...+|+.+...++...|| ++.++.|+
T Consensus 85 l~~ia~~l~~~~~~~G~~~i~~~~~~~~~~e~~~~~~~~~~~~~gs~n~~~~~~~c~~~~~~~~~~~~G~~~~~~~~~d~ 164 (723)
T 2nap_A 85 LDLMASRFRSSIDMYGPNSVAWYGSGQCLTEESYVANKIFKGGFGTNNVDGNPRLCMASAVGGYVTSFGKDEPMGTYADI 164 (723)
T ss_dssp HHHHHHHHHHHHHHHCGGGEEEEECTTSCHHHHHHHHHHHHHTSCCCCEEEGGGGTTHHHHHHHHHHHSSCSCSSCGGGG
T ss_pred HHHHHHHHHHHHHhhCCCeEEEEeCCcccchhhHHHHHHHHHhcCCCceeCCCccccchHhHHHHhccCCCCCCCChhhH
Confidence 9999999987 5798888888999999999999997 99999998888888765556555555 35688999
Q ss_pred cccCeEEEEcCCccccchhHHHHHHHHHhhC-CCeEEEEccCCCCcccccc------CCCcHHHHHHHHh----------
Q psy11935 1049 EEADLILLIGTNPRFEAPLFNARIRKGYLTN-ELDVAYIGPKVDLRYDYEH------LGESADLIKQLAS---------- 1111 (1334)
Q Consensus 1049 e~ad~Il~~G~np~~~~p~~~~rir~a~~~~-g~kiivIdp~~~~t~~~a~------~Gtd~a~l~~l~~---------- 1111 (1334)
++||+||+||+||..++|+++.+++++.+++ |+|||+|||+.+.|+..++ ||||.+++.+|+.
T Consensus 165 ~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~~g~klividP~~t~ta~~Ad~~l~irPGtD~al~~al~~~ii~~~l~D~ 244 (723)
T 2nap_A 165 DQATCFFIIGSNTSEAHPVLFRRIARRKQVEPGVKIIVADPRRTNTSRIADMHVAFRPGTDLAFMHSMAWVIINEELDNP 244 (723)
T ss_dssp GTCSEEEEESCCHHHHSHHHHHHHHHHHHHCTTCEEEEECSBCCGGGGGCSEEECCCTTTHHHHHHHHHHHHHHTTCSCH
T ss_pred hHCCEEEEEcCChhHhCcHHHHHHHHHHhhCCCCEEEEEcCcCCchhhhhCeeeecCCCcHHHHHHHHHHHHHHcCCccH
Confidence 9999999999999999999999999987543 9999999999999988765 9999998776531
Q ss_pred -----------------c--------------------------HHHHHHHHhcCCCcEEEEcCCc---ccHHHHHHHHH
Q psy11935 1112 -----------------G--------------------------SHPFSKKLSAAKKPLIVVGADI---SDGAAVLALVQ 1145 (1334)
Q Consensus 1112 -----------------g--------------------------~~~~A~~l~~a~~~~ii~G~~~---~~g~~~~~al~ 1145 (1334)
| |+++|+.|+++++++|++|+|+ .+|..+.+++.
T Consensus 245 ~fl~~~tn~~~g~~~~~gf~~l~~~~~~~tpe~~a~itGv~~~~i~~~A~~~a~a~~~~i~~g~g~~~~~~g~~~~~a~~ 324 (723)
T 2nap_A 245 RFWQRYVNFMDAEGKPSDFEGYKAFLENYRPEKVAEICRVPVEQIYGAARAFAESAATMSLWCMGINQRVQGVFANNLIH 324 (723)
T ss_dssp HHHHHHEEEECTTSCEECHHHHHHHHGGGCHHHHHHHHTSCHHHHHHHHHHHHHSSSEEEEECTTTSSSTTHHHHHHHHH
T ss_pred HHHHHhhccccccccCcHHHHHHHHHhcCCHHHHHHHHCcCHHHHHHHHHHHHhCCCeEEEeccccccchhHHHHHHHHH
Confidence 2 4678999999999999999988 57877777666
Q ss_pred HHH---HhhcCCCCCCCCCcccccchhhhhhhhh-hhcC------------------------------CC---cc----
Q psy11935 1146 QLA---AKVTCESDVPCDWKVLNILQKAASQVAA-LDIG------------------------------YK---PG---- 1184 (1334)
Q Consensus 1146 ~l~---~~~g~~Gg~~~~~~~~~~l~~~~n~~G~-~~~g------------------------------~~---pg---- 1184 (1334)
.|+ |++|++|+ ++.++++.+|.+|+ .++| .. ||
T Consensus 325 ~L~~l~G~ig~~G~------g~~~~~~~~n~~g~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~ 398 (723)
T 2nap_A 325 NLHLITGQICRPGA------TSFSLTGQPNACGGVRDGGALSHLLPAGRAIPNAKHRAEMEKLWGLPEGRIAPEPGYHTV 398 (723)
T ss_dssp HHHHHHTCCSBTTB------EEEECCCSTTHHHHTTTTTCSTTEETTTEETTCHHHHHHHHHHHTCCTTCSCSSCCCCHH
T ss_pred HHHHHhCCCCCCCC------ccCCCcccccccCcccccccCCCCCCccccCCCHHHHHHHHHHhCCCcccCCCCCCCCHH
Confidence 554 55555553 23333333343333 2221 11 23
Q ss_pred --hhhHhcCCCcEEEEECCChhhh------HHhhcCC-CceEEEEcCCC-ChhhccccEEecCCCCCCCCcccccCCCce
Q psy11935 1185 --TSAIREKPPKVLFLLGADEGSI------SRDDVGK-DCFIIYQGHHG-DHGASIADAILPGAAYTEKQSTYVNTEGRA 1254 (1334)
Q Consensus 1185 --~~~i~~g~ik~l~~~g~np~~~------~~~al~k-~~fvV~~d~~~-~eta~~ADvVLP~a~~~Ek~Gt~~n~egrv 1254 (1334)
++++..|++|++|++|+||+.. ..++|++ ++|+|++|+|+ |+|+.+||||||+++|+|++|+++|.+|++
T Consensus 399 ~~~~~~~~g~ik~l~~~g~Np~~~~p~~~~~~~al~~~~d~~V~~d~~~~teTa~~ADvvLP~~~~~E~~g~~~~~~~~~ 478 (723)
T 2nap_A 399 ALFEALGRGDVKCMIICETNPAHTLPNLNKVHKAMSHPESFIVCIEAFPDAVTLEYADLVLPPAFWCERDGVYGCGERRY 478 (723)
T ss_dssp HHHHHHHHTSSCEEEEESCCHHHHSSSHHHHHHHHTCTTCEEEEECSCTTCGGGGTCSEEECBCCGGGSCEEEECTTSEE
T ss_pred HHHHHHhcCCceEEEEeCcCccccCCCHHHHHHHHhcCCCEEEEEecCCCCchHhhCcEEecCCcccccCcceecCCceE
Confidence 2345578999999999999642 4689999 99999999999 999999999999999999999999999999
Q ss_pred EEeccccCCCCCcccHHHHHHHHHHHhcC
Q psy11935 1255 QQTLTAVTPPGLAREDWKIIRALSEGVSS 1283 (1334)
Q Consensus 1255 q~~~~av~P~gear~dw~Il~~La~~lg~ 1283 (1334)
|.++|+|+|+|++|+||+|+.+||++||.
T Consensus 479 ~~~~~~v~P~ge~r~d~~Il~~La~~lg~ 507 (723)
T 2nap_A 479 SLTEKAVDPPGQCRPTVNTLVEFARRAGV 507 (723)
T ss_dssp EEECCCSCCCTTCBCHHHHHHHHHHHHTC
T ss_pred EEEecccCCCcCCCcHHHHHHHHHHHhCC
Confidence 99999999999999999999999999994
No 5
>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1
Probab=100.00 E-value=6.5e-57 Score=594.56 Aligned_cols=380 Identities=19% Similarity=0.230 Sum_probs=320.9
Q ss_pred cCCCCcceeeeeecccCCCCCceEEEe--eCCEEEEecCCCCCCCCccccccccccccccc-cccccCCceEec-CCCCe
Q psy11935 896 TARPWETRKTESVDVLDAVGSNIIVST--RTGEVLRVLPRLNEDINEEWLADKGRFAYDGL-KRQRLLTPFVRN-CDGQL 971 (1334)
Q Consensus 896 ~~r~we~~~~~s~c~~C~~gC~i~v~v--~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l-~~~Rl~~PliR~-~~g~~ 971 (1334)
+.|+|+++.+.|+|++|++||++.|+| ++|+|++|+|++++|+|+|++|+||+++++.+ +|+||++||+|. ++|+|
T Consensus 4 ~~r~~~~~~~~t~C~~C~~gC~i~v~v~~~~g~v~~v~g~~~~p~n~G~lC~kG~~~~~~~~~pdRl~~Pl~R~rg~g~~ 83 (977)
T 1h0h_A 4 ALKTVDAKQTTSVCCYCSVGCGLIVHTDKKTNRAINVEGDPDHPINEGSLCAKGASTWQLAENERRPANPLYRAPGSDQW 83 (977)
T ss_dssp CCTTTTSEEEEEECSSBTTCCEEEEEECTTTCCEEEEEECTTCTTTTTCCCHHHHTHHHHHSCTTSCSSCEEECTTCSSC
T ss_pred cccccccEEEEEECCCCcccCCEEEEEEccCCEEEEEEcCCCCCCCCCccCHHHHHHHHHhcCcccccCCEEeccCCCCe
Confidence 479999999999999999999999999 99999999999999999999999999999998 599999999996 45899
Q ss_pred eecCHHHHHHHHHHHhcc-------------------CCEEEEeCCcCCHHHHHHHHHHHHHhCCCccccCCCCCcchhh
Q psy11935 972 VATEWEDALIAVAQKLQT-------------------SEVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAG 1032 (1334)
Q Consensus 972 ~~iSWdeAl~~ia~~L~~-------------------~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~ 1032 (1334)
++|||||||+.||++|++ +++++++|+..++|..+++++|++.+|++|++++.++|+.+..
T Consensus 84 ~~iSWdeAl~~ia~~l~~i~~~~g~~~~~~G~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~Gs~n~~~~~~~c~~~~~ 163 (977)
T 1h0h_A 84 EEKSWDWMLDTIAERVAKTREATFVTKNAKGQVVNRCDGIASVGSAAMDNEECWIYQAWLRSLGLFYIEHQARIXHSATV 163 (977)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHEEEECTTSCEEEEECSEEEECCTTSCHHHHHHHHHHHHHTTBCCEECTHHHHTHHHH
T ss_pred eecCHHHHHHHHHHHHHHHHHhhcccccccccccccCceEEEEeCCCcccHHHHHHHHHHHHcCCCccccccccccchHH
Confidence 999999999999999986 1467777888889999999999999999999988888887665
Q ss_pred hhhhhhcc---CCCCcccccccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCCCCcccccc------CCCcH
Q psy11935 1033 TDLRANYL---LNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEH------LGESA 1103 (1334)
Q Consensus 1033 ~~~~~~~~---~~~~~~die~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~~~t~~~a~------~Gtd~ 1103 (1334)
.++...|| +++++.|+++||+||+||+||.+++|+.+.+++++. ++|+|||||||+++.|+..++ ||||.
T Consensus 164 ~~~~~~~G~~~~~~~~~D~~~ad~il~~G~N~~~~~p~~~~~~~~a~-~~G~klivIDPr~t~ta~~AD~~l~irPGTD~ 242 (977)
T 1h0h_A 164 AALAESYGRGAMTNHWIDLKNSDVILMMGSNPAENHPISFKWVMRAK-DKGATLIHVDPRYTRTSTKCDLYAPLRSGSDI 242 (977)
T ss_dssp HHHHHHHSCCSCSSCTGGGGGCSEEEEESCCHHHHSTTHHHHHHHHH-HTTCEEEEECSSCCTTGGGCSEEECCCTTCHH
T ss_pred HHHHHHhCCCCCCCCHHHHhhCCEEEEECCChHHhCcHHHHHHHHHH-HCCCeEEEECCCCCchhHHhCeeeccCCCchH
Confidence 56666665 346789999999999999999999999999999886 689999999999999998875 99999
Q ss_pred HHHHHHH------------------h------------------------------------------------------
Q psy11935 1104 DLIKQLA------------------S------------------------------------------------------ 1111 (1334)
Q Consensus 1104 a~l~~l~------------------~------------------------------------------------------ 1111 (1334)
+|+.+|+ .
T Consensus 243 AL~~am~~~ii~~~l~D~~fv~~~t~~~~lV~~~~~~~~g~~~g~d~~~~~~~~~~~~~~l~~dg~~~~~~~l~~~~t~f 322 (977)
T 1h0h_A 243 AFLNGMTKYILEKELYFKDYVVNYTNASFIVGEGFAFEEGLFAGYNKETRKYDKSKWGFERDENGNPKRDETLKHPRCVF 322 (977)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHBGGGBBBCTTCCEETTEETTEETTTTEECGGGGCBCBCTTSCBCBCTTSCSTTBHH
T ss_pred HHHHHHHHHHHHCCcccHHHHHHhcccccccccccccccccccccccccccccccchhhhhcccccccccccccccccHH
Confidence 9877653 1
Q ss_pred -------------------c-----HHHHHHHHhcC----CCcEEEEcCCc---ccHHHHHHHHHHH---HHhhcCCCCC
Q psy11935 1112 -------------------G-----SHPFSKKLSAA----KKPLIVVGADI---SDGAAVLALVQQL---AAKVTCESDV 1157 (1334)
Q Consensus 1112 -------------------g-----~~~~A~~l~~a----~~~~ii~G~~~---~~g~~~~~al~~l---~~~~g~~Gg~ 1157 (1334)
| |+++|+.|+++ ++++|++|+|. .+|.+..+++..| +|++|++||+
T Consensus 323 ~~l~~~~~~ytpe~aa~itGvp~~~I~~lA~~~a~~~~~~~~~~i~~g~G~~~~~~G~~~~~ai~~L~~ltGnig~~Ggg 402 (977)
T 1h0h_A 323 QIMKKHYERYDLDKISAICGTPKELILKVYDAYCATGKPDKAGTIMYAMGWTQHTVGVQNIRAMSINQLLLGNIGVAGGG 402 (977)
T ss_dssp HHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHHHHGGGSTTCCEEEEECCCCSSHHHHHHHHHHHHHHHHHTTCSSSTTCS
T ss_pred HHHHHHHHhCCHHHHHHHHCcCHHHHHHHHHHHHhccCCCCceEEEEcccccccchHHHHHHHHHHHHHHhCCCCCCCcc
Confidence 1 46789999998 88899999887 5677766665555 4556666643
Q ss_pred CCCCcccccchhhhhhhhhhhcCC--------------------------------------------------------
Q psy11935 1158 PCDWKVLNILQKAASQVAALDIGY-------------------------------------------------------- 1181 (1334)
Q Consensus 1158 ~~~~~~~~~l~~~~n~~G~~~~g~-------------------------------------------------------- 1181 (1334)
. +++++..|.+|+.++|.
T Consensus 403 ~------~~~~g~~n~~g~~d~g~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 476 (977)
T 1h0h_A 403 V------NALRGEANVQGSTDHGLLMHIYPGYLGTARASIPTYEEYTKKFTPVSKDPQSANWWSNFPKYSASYIKSMWPD 476 (977)
T ss_dssp E------EECCSBTTHHHHHHTTCBTTEETTTEECCBTTCCSHHHHHHHHCCCCCCTTCCCGGGGHHHHHHHHHHHHCTT
T ss_pred c------cccCCccccccccccccccccCccccccCcccchhhhhhhhccccccccccccccccccchhhhhhHHHhhcc
Confidence 2 12222222222211110
Q ss_pred ---------Cc------c------hhhHhcCCCcEEEEECCChhhh------HHhhcCCCceEEEEcCCCChhhcccc--
Q psy11935 1182 ---------KP------G------TSAIREKPPKVLFLLGADEGSI------SRDDVGKDCFIIYQGHHGDHGASIAD-- 1232 (1334)
Q Consensus 1182 ---------~p------g------~~~i~~g~ik~l~~~g~np~~~------~~~al~k~~fvV~~d~~~~eta~~AD-- 1232 (1334)
.| + ++++..|++|++|++|+||+.. ..++|++++|+|++|+|+|+||.+||
T Consensus 477 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~ik~l~~~g~Np~~s~p~~~~~~~aL~kldf~Vv~D~~~teTa~~AD~~ 556 (977)
T 1h0h_A 477 ADLNEAYGYLPKGEDGKDYSWLTLFDDMFQGKIKGFFAWGQNPACSGANSNKTREALTKLDWMVNVNIFDNETGSFWRGP 556 (977)
T ss_dssp SCHHHHHHHSCCBCTTCCCSHHHHHHHHHTTCCCEEEEESCCHHHHSBSHHHHHHHHTTCSEEEEEESSCCTTTTGGGST
T ss_pred cccchhhccCCcccccCCccHHHHHHHhhcCCceEEEEeCcCccccCCCHHHHHHHHhcCCEEEEEecccChHHHhhhcc
Confidence 01 1 3456678999999999999652 47899999999999999999999988
Q ss_pred -----------EEecCCCCCCCCcccccCCCceEEeccccCCCCCcccHHHHHHHHHHHhc
Q psy11935 1233 -----------AILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPGLAREDWKIIRALSEGVS 1282 (1334)
Q Consensus 1233 -----------vVLP~a~~~Ek~Gt~~n~egrvq~~~~av~P~gear~dw~Il~~La~~lg 1282 (1334)
||||+++|+|++|+++|+++++|..+|+|+|+|++|+||+|+++||++||
T Consensus 557 ~~~~AD~~~~~iVLPaa~~~E~~g~~~~~~~~v~~~~~~v~P~gear~d~~I~~~La~rl~ 617 (977)
T 1h0h_A 557 DMDPKKIKTEVFFLPCAVAIEKEGSISNSGRWMQWRYVGPEPRKNAIPDGDLIVELAKRVQ 617 (977)
T ss_dssp TCCGGGCCCEEEEEEBCCGGGCCEEEECTTCEEEEECCSSCCCTTCBCHHHHHHHHHHHHH
T ss_pred CccccccccceEEECCCCcccCCCccccCCCeEEeeccccCCccccccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999994
No 6
>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*
Probab=100.00 E-value=1.6e-55 Score=583.31 Aligned_cols=377 Identities=14% Similarity=0.186 Sum_probs=317.0
Q ss_pred CCcceeeeeecccCCCCCceEEEe-----eCC--EEEEecCCCCCCCCccccccccccccccc-cccccCCceEec-CCC
Q psy11935 899 PWETRKTESVDVLDAVGSNIIVST-----RTG--EVLRVLPRLNEDINEEWLADKGRFAYDGL-KRQRLLTPFVRN-CDG 969 (1334)
Q Consensus 899 ~we~~~~~s~c~~C~~gC~i~v~v-----~~g--~v~ri~p~~~~~vn~g~lC~kgr~~~~~l-~~~Rl~~PliR~-~~g 969 (1334)
+.+.+.+.|+|++|++||++.|++ ++| +|++|+|++++|+|.|++|+||++.++.+ +|+||++||+|. ++|
T Consensus 40 ~~~~~~~~t~C~~C~~gC~l~v~v~~~~~~~G~~~v~~v~g~~~~p~n~G~lC~kG~~~~~~~~~pdRl~~Pl~R~~g~g 119 (1015)
T 1kqf_A 40 LLRAKEIRNTCTYCSVGCGLLMYSLGDGAKNAREAIYHIEGDPDHPVSRGALCPKGAGLLDYVNSENRLRYPEYRAPGSD 119 (1015)
T ss_dssp TTTSEEEEEECSSBTTCCEEEEEEESCSCTTSCCEEEEEEECTTCTTTTTCCCHHHHTTHHHHTCTTBCCSCEEECTTCS
T ss_pred cCCceEEeeECCCCCCCCCEEEEEecccccCCceeEEEEEecCCCCCCCCccCHHHHHHHHHhcCcchhcCCEEeccCCC
Confidence 446789999999999999999999 689 99999999999999999999999999998 699999999996 468
Q ss_pred CeeecCHHHHHHHHHHHhcc-------------------CCEEEEeCCcCCHHHHHHHHHHHHHhCCCccccCCCCCcch
Q psy11935 970 QLVATEWEDALIAVAQKLQT-------------------SEVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEG 1030 (1334)
Q Consensus 970 ~~~~iSWdeAl~~ia~~L~~-------------------~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~ 1030 (1334)
+|++|||||||+.||++|++ +++++++|+..++|..+++++|++.+|++|++++..+|+.+
T Consensus 120 ~~~~iSWdeAl~~iA~~l~~i~~~~g~~~~~~G~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~Gs~n~~~~~~~c~~~ 199 (1015)
T 1kqf_A 120 KWQRISWEEAFSRIAKLMKADRDANFIEKNEQGVTVNRWLSTGMLCASGASNETGMLTQKFARSLGMLAVDNQARVXHGP 199 (1015)
T ss_dssp SCEECCHHHHHHHHHHHHHHHHHHHCEEECTTSCEEEEBCSEEEECCTTSCHHHHHHHHHHHHHTTBCCEECGGGGTTHH
T ss_pred ceeECCHHHHHHHHHHHHHHHHhhhcccccccCcccccCceEEEEeCCCCccHHHHHHHHHHHHhCCCCcCCcccccccH
Confidence 99999999999999999986 14677788888999999999999999999999988899876
Q ss_pred hhhhhhhhcc---CCCCcccccccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCCCCcccccc------CCC
Q psy11935 1031 AGTDLRANYL---LNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEH------LGE 1101 (1334)
Q Consensus 1031 ~~~~~~~~~~---~~~~~~die~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~~~t~~~a~------~Gt 1101 (1334)
...++...|| +++++.|+++||+||+||+||.+++|+.+.+++++.+++|+|||||||+++.|+..++ |||
T Consensus 200 ~~~~~~~~~G~~~~~~~~~D~~~ad~il~~G~N~~~~~p~~~~~i~~a~~~~GaklivIDPr~t~ta~~AD~~l~irPGT 279 (1015)
T 1kqf_A 200 TVASLAPTFGRGAMTNHWVDIKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIVVDPRFTRTASVADIYAPIRSGT 279 (1015)
T ss_dssp HHHHHHHHHSCCSCSSCTGGGGGCSEEEEESCCHHHHSTTTTHHHHHHHHHSCCEEEEECSSCCHHHHTCSEEECCCTTC
T ss_pred HHHHHHHHhCCCCCCCCHHHHhhCCEEEEECCChhhhCchHHHHHHHHHHHCCCeEEEEeCCCCchhHhhCeeeccCCCc
Confidence 5555555555 3567899999999999999999999999999999875689999999999999988765 999
Q ss_pred cHHHHHHHH------------------h----------------------------------------------------
Q psy11935 1102 SADLIKQLA------------------S---------------------------------------------------- 1111 (1334)
Q Consensus 1102 d~a~l~~l~------------------~---------------------------------------------------- 1111 (1334)
|.+|+.+|+ .
T Consensus 280 D~AL~lam~~~ii~~~l~D~~fv~~~t~~~~LV~~d~~f~~g~~~g~d~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~t 359 (1015)
T 1kqf_A 280 DITFLSGVLRYLIENNKINAEYVKHYTNASLLVRDDFAFEDGLFSGYDAEKRQYDKSSWNYQLDENGYAKRDETLTHPRC 359 (1015)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHBSTTBBBCTTCCEETTEETTEETTTTEECCTTSSBCBCTTSSBCBCTTSCSTTB
T ss_pred hHHHHHHHHHHHHHcCCcCHHHHHhhcCcceeeccccccccccccccccccccccccchhhhhccCCcccccccccccch
Confidence 999877653 1
Q ss_pred ---------------------c-----HHHHHHHHhcC----CCcEEEEcCCc---ccHHHHHHHHHH---HHHhhcCCC
Q psy11935 1112 ---------------------G-----SHPFSKKLSAA----KKPLIVVGADI---SDGAAVLALVQQ---LAAKVTCES 1155 (1334)
Q Consensus 1112 ---------------------g-----~~~~A~~l~~a----~~~~ii~G~~~---~~g~~~~~al~~---l~~~~g~~G 1155 (1334)
| |+++|+.|+++ ++++|++|+|+ .+|.+..+++.. |+|++|++|
T Consensus 360 vf~~l~~~~~~ytpe~aa~itGvp~e~I~~lA~~~a~a~~~~~~~~i~~g~G~~~~~~G~~~~rai~~L~~ltGnig~pG 439 (1015)
T 1kqf_A 360 VWNLLKEHVSRYTPDVVENICGTPKADFLKVCEVLASTSAPDRTTTFLYALGWTQHTVGAQNIRTMAMIQLLLGNMGMAG 439 (1015)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHHHHGGGSTTCCEEEEESHHHHSSTTHHHHHHHHHHHHHHHTCTTCTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHCcCHHHHHHHHHHHHhccCCCCcEEEEECccccccCcHHHHHHHHHHHHHHhCCCCCCC
Confidence 1 46789999998 88999999887 677776666554 556666776
Q ss_pred CCCCCCcccccchhhhhhhhhhhcCC------------------------------------------------------
Q psy11935 1156 DVPCDWKVLNILQKAASQVAALDIGY------------------------------------------------------ 1181 (1334)
Q Consensus 1156 g~~~~~~~~~~l~~~~n~~G~~~~g~------------------------------------------------------ 1181 (1334)
|+ ++++++.+|.+|+.++|.
T Consensus 440 gg------~~~~~g~~n~~g~~~~g~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 513 (1015)
T 1kqf_A 440 GG------VNALRGHSNIQGLTDLGLLSTSLPGYLTLPSEKQVDLQSYLEANTPKATLADQVNYWSNYPKFFVSLMKSFY 513 (1015)
T ss_dssp CS------EEECCCBTTHHHHHHTTCSTTEEGGGEECCBTTCCSHHHHHHHHSCCCSSSSCCCGGGGHHHHHHHHHHHHH
T ss_pred cc------ccCCCCccCCCCccccccccccCccccCCCccccchhhhhhcccccccccccccccccccchhhhhhhhhhc
Confidence 53 222222222222222211
Q ss_pred --------------Cc----c------hhhHhcCCCcEEEEECCChhhh------HHhhcCCCceEEEEcCCCChhhccc
Q psy11935 1182 --------------KP----G------TSAIREKPPKVLFLLGADEGSI------SRDDVGKDCFIIYQGHHGDHGASIA 1231 (1334)
Q Consensus 1182 --------------~p----g------~~~i~~g~ik~l~~~g~np~~~------~~~al~k~~fvV~~d~~~~eta~~A 1231 (1334)
.| | ++++..|++|++|++|.||+.. +.++|++++|+|++|+|+|+|+.+|
T Consensus 514 g~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~~~g~ik~l~~~g~Np~~s~pd~~~~~~aL~kldf~Vv~D~~~teTa~~A 593 (1015)
T 1kqf_A 514 GDAAQKENNWGYDWLPKWDQTYDVIKYFNMMDEGKVTGYFCQGFNPVASFPDKNKVVSCLSKLKYMVVIDPLVTETSTFW 593 (1015)
T ss_dssp GGGCCGGGGGGGGGSCCBSSCCCHHHHHHHHHTTCCCEEEEESCCHHHHSSSHHHHHHHHTTCSEEEEEESBCCTTTTTT
T ss_pred ccccccccccccccCCcccCCCCHHHHHHHhhCCCceEEEEeccChhccCCCHHHHHHHHhcCCeEEEEecccChHHHHh
Confidence 12 1 2345678999999999999652 4789999999999999999999999
Q ss_pred ------------c-----EEecCCCCCCCCcccccCCCceEEeccccCCCCCcccHHHHHHHHHHHh
Q psy11935 1232 ------------D-----AILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPGLAREDWKIIRALSEGV 1281 (1334)
Q Consensus 1232 ------------D-----vVLP~a~~~Ek~Gt~~n~egrvq~~~~av~P~gear~dw~Il~~La~~l 1281 (1334)
| ||||+++|+|++|+++|+++++|..+++|+|+|++|+||+|+++||++|
T Consensus 594 ~~~~d~~d~~~aD~~~~~vVLPaa~~~Ek~g~~~n~~~~v~~~~~~v~P~gear~d~~I~~~La~rl 660 (1015)
T 1kqf_A 594 QNHGESNDVDPASIQTEVFRLPSTCFAEEDGSIANSGRWLQWHWKGQDAPGEARNDGEILAGIYHHL 660 (1015)
T ss_dssp SCCGGGGCCCGGGCCCEEEEEEBCCGGGSCEEEECTTCEEEEECCCSCCSTTCBCHHHHHHHHHHHH
T ss_pred hcccccccccchhcccceEEecCCchhccCCceecCCceEEEeccccCCcccccCHHHHHHHHHHHH
Confidence 6 9999999999999999999999999999999999999999999999999
No 7
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}
Probab=100.00 E-value=2e-55 Score=568.09 Aligned_cols=376 Identities=15% Similarity=0.165 Sum_probs=306.3
Q ss_pred eeeeecccCCCCCceEEEee-CCEEEEecCCCCCCCC-ccccccccccccccc-cccccCCceEecC----CCCeeecCH
Q psy11935 904 KTESVDVLDAVGSNIIVSTR-TGEVLRVLPRLNEDIN-EEWLADKGRFAYDGL-KRQRLLTPFVRNC----DGQLVATEW 976 (1334)
Q Consensus 904 ~~~s~c~~C~~gC~i~v~v~-~g~v~ri~p~~~~~vn-~g~lC~kgr~~~~~l-~~~Rl~~PliR~~----~g~~~~iSW 976 (1334)
+++|+|++|++||++.|+++ +|+|+||+|++++|+| +|++|+||+++++.+ +|+||++||+|.+ +|+|++|||
T Consensus 1 ~~~t~C~~C~~gC~i~v~v~~~g~v~rv~g~~~~p~n~~g~lC~kG~~~~~~~~~p~Rl~~Pl~R~g~~rG~g~~~~isW 80 (727)
T 2e7z_A 1 KKHVVCQSCDINCVVEAEVKADGKIQTKSISEPHPTTPPNSICMKSVNADTIRTHKDRVLYPLKNVGSKRGEQRWERISW 80 (727)
T ss_dssp CEEEECCSSTTCCEEEEEECTTSCEEEEECSSCCSSSCTTCCCHHHHTHHHHHTCTTCCCSCEEECSSSTTCCCEEECCH
T ss_pred CCceECCCCcCCCCEEEEEEECCEEEEEEcCCCCCCCCCCCcChhHHhHHHHhhCcccccCchhhcCCCCCCCCeEEecH
Confidence 36899999999999999999 9999999999999999 999999999999998 5999999999964 489999999
Q ss_pred HHHHHHHHHHhcc-------CCEEEEeCCcCCHHHHHHHHHHHHHhCCCccccCCCCCcchhhhhhhhhccCCCCccccc
Q psy11935 977 EDALIAVAQKLQT-------SEVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAE 1049 (1334)
Q Consensus 977 deAl~~ia~~L~~-------~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~die 1049 (1334)
||||+.||++|++ ++|++++|+..+++..+++++|++.+|++|+++++++|+.+...++...||.. ...|++
T Consensus 81 deAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~G~~n~~~~~~~c~~~~~~~~~~~~G~~-~~~d~~ 159 (727)
T 2e7z_A 81 DQALDEIAEKLKKIIAKYGPESLGVSQTEINQQSEYGTLRRFMNLLGSPNWTSAMYMCIGNTAGVHRVTHGSY-SFASFA 159 (727)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGEEEEECGGGTCCCTTHHHHHHHHHTCCCEECGGGGTTHHHHHHHHHHHSSC-EEECTT
T ss_pred HHHHHHHHHHHHHHHHhhCCcEEEEEeCCCCCccchHHHHHHHHHcCCCCccCCcccchhHHHHHHHHhcCCC-CCCCcc
Confidence 9999999999987 57988888766656556779999999999999888889876555555566642 456999
Q ss_pred ccCeEEEEcCCccccch-hHHHHHHHHHhhCCCeEEEEccCCCCcccccc------CCCcHHHHHHHH------------
Q psy11935 1050 EADLILLIGTNPRFEAP-LFNARIRKGYLTNELDVAYIGPKVDLRYDYEH------LGESADLIKQLA------------ 1110 (1334)
Q Consensus 1050 ~ad~Il~~G~np~~~~p-~~~~rir~a~~~~g~kiivIdp~~~~t~~~a~------~Gtd~a~l~~l~------------ 1110 (1334)
+||+||+||+||.+++| +++.+++++. ++|+|||||||+.+.|+..++ ||||.+++.+|+
T Consensus 160 ~ad~il~~G~n~~~~~p~~~~~~l~~a~-~~G~klividPr~t~ta~~Ad~~l~irPGtD~al~~a~~~~ii~~~l~d~~ 238 (727)
T 2e7z_A 160 DSNCLLFIGKNLSNHNWVSQFNDLKAAL-KRGCKLIVLDPRRTKVAEMADIWLPLRYGTDAALFLGMINVIINEQLYDKE 238 (727)
T ss_dssp TCSEEEEESCCCBTTBSHHHHHHHHHHH-HHTCEEEEECSSCCHHHHHCSEEECCCTTCHHHHHHHHHHHHHHTTCSCHH
T ss_pred cCCEEEEECCChhhcCCHHHHHHHHHHH-HCCCeEEEECCCCCcchhhcceeecCCCCcHHHHHHHHHHHHHHCCcccHH
Confidence 99999999999999999 8999999986 578999999999999988764 899999987664
Q ss_pred --------------------------------hcHHHHHHHHhcCCCcEEEEcCCc---ccHHHHHHHHHHHH---Hhhc
Q psy11935 1111 --------------------------------SGSHPFSKKLSAAKKPLIVVGADI---SDGAAVLALVQQLA---AKVT 1152 (1334)
Q Consensus 1111 --------------------------------~g~~~~A~~l~~a~~~~ii~G~~~---~~g~~~~~al~~l~---~~~g 1152 (1334)
+.|+++|+.|+.+++++|++|+|+ .+|.++.+++.+|+ |++
T Consensus 239 fv~~~t~gf~~l~~~v~~~tpe~~a~itGv~~~~I~~~A~~~a~a~~~~i~~g~g~~~~~~g~~~~~a~~~L~~l~G~i- 317 (727)
T 2e7z_A 239 FVENWCVGFEELKERVQEYPLDKVAEITGCDAGEIRKAAVMFATESPASIPWAVSTDMQKNSCSAIRAQCILRAIVGSF- 317 (727)
T ss_dssp HHHHHEECHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHHHHHSSSEECCCCSGGGSSTTHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHhHHHHHHHHHHhcCCHHHHHHHHCcCHHHHHHHHHHHHhCCCeEEEeCchhhhhccHHHHHHHHHHHHHHhCCc-
Confidence 115678999999999999999988 67777776655554 555
Q ss_pred CCCCCCCC-----Ccc------cccchhh--hhhhh--hhhc-----------------CC----Cc----c-----hhh
Q psy11935 1153 CESDVPCD-----WKV------LNILQKA--ASQVA--ALDI-----------------GY----KP----G-----TSA 1187 (1334)
Q Consensus 1153 ~~Gg~~~~-----~~~------~~~l~~~--~n~~G--~~~~-----------------g~----~p----g-----~~~ 1187 (1334)
++||+... +.+ ...+++. ++..| .... |+ .+ . +++
T Consensus 318 ~~Ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~wg~~~~~~~~~~~~~~~~l~~~ 397 (727)
T 2e7z_A 318 VNGAEILGAPHSDLVPISKIQMHEALPEEKKKLQLGTETYPFLTYTGMSALEEPSERVYGVKYFHNMGAFMANPTALFTA 397 (727)
T ss_dssp TSSSEEECBSCTTSCCHHHHTTGGGSCHHHHHHCTTTTTCGGGSHHHHGGGHHHHHHHHSCSSCCCSSCSCCCHHHHHHH
T ss_pred ccCCccccCCCccccccccccchhhcCccccccccCccccCcccccccchhhhhhhhhcccccccccccccccHHHHHHH
Confidence 56642110 000 0011110 11111 0000 00 00 0 245
Q ss_pred HhcCC---CcEEEEECCChhh------hHHhhcCCCceEEEEcCCCChhhccccEEecCCCCCCCCcccccCCCc--eEE
Q psy11935 1188 IREKP---PKVLFLLGADEGS------ISRDDVGKDCFIIYQGHHGDHGASIADAILPGAAYTEKQSTYVNTEGR--AQQ 1256 (1334)
Q Consensus 1188 i~~g~---ik~l~~~g~np~~------~~~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~Gt~~n~egr--vq~ 1256 (1334)
+..|+ +|++|++|+||+. ...++|++++|+|++|+|+|+|+.+||||||+++|+|++|+++|.+++ +|.
T Consensus 398 ~~~g~py~ik~l~~~g~Np~~~~p~~~~~~~aL~~l~~~V~~d~~~teTa~~ADvvLP~~~~~E~~g~~~~~~~~~~v~~ 477 (727)
T 2e7z_A 398 MATEKPYPVKAFFALASNALMGYANQQNALKGLMNQDLVVCYDQFMTPTAQLADYVLPGDHWLERPVVQPNWEGIPFGNT 477 (727)
T ss_dssp HHHCCSSCCCEEEEESCCGGGSSSCHHHHHHHHHTCSEEEEEESSCCTTGGGCSEEEEBCCGGGCCBCSCSSTBCSEEEC
T ss_pred HHcCCCcceEEEEEeCCChhhcCCCHHHHHHHHhCCCCEEEeecccCccHhhCcEEeCCCCccccccccccCCCccceEE
Confidence 55665 9999999999965 247899999999999999999999999999999999999999999875 999
Q ss_pred eccccCCCCCcccHHHHHHHHHHHhc
Q psy11935 1257 TLTAVTPPGLAREDWKIIRALSEGVS 1282 (1334)
Q Consensus 1257 ~~~av~P~gear~dw~Il~~La~~lg 1282 (1334)
++|+|+|+|++|+||+|+++||++||
T Consensus 478 ~~~~v~P~gear~d~~I~~~La~~lg 503 (727)
T 2e7z_A 478 SQQVVEPAGEAKDEYYFIRELAVRMG 503 (727)
T ss_dssp BCCCSCCSTTCBCHHHHHHHHHHHTT
T ss_pred EccccCCCCCCcCHHHHHHHHHHHhC
Confidence 99999999999999999999999999
No 8
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A*
Probab=100.00 E-value=3e-54 Score=559.23 Aligned_cols=377 Identities=15% Similarity=0.128 Sum_probs=304.4
Q ss_pred ceeeeeecccCCCCCceEEEeeCCEEEEecCCCCCCCCccccccccccccccc-cccccCCceEecC-----CCCeeecC
Q psy11935 902 TRKTESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGL-KRQRLLTPFVRNC-----DGQLVATE 975 (1334)
Q Consensus 902 ~~~~~s~c~~C~~gC~i~v~v~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l-~~~Rl~~PliR~~-----~g~~~~iS 975 (1334)
.+.++|+|++|++||++.|++++|+|+||+|++++|+|+||+|+||+++++.+ +|+||++||+|.+ +|+|++||
T Consensus 37 ~~~~~t~C~~C~~gC~i~v~v~~g~v~~v~g~~~~p~n~g~lC~kg~~~~~~~~~p~Rl~~Pl~R~g~~~rG~g~~~~is 116 (765)
T 2vpz_A 37 VKSVYQICEGCFWRCGIVAHAVGNRVYKVEGYEANPKSRGRLCPRGQGAPQTTYDPDRLKRPLIRVEGSQRGEGKYRVAT 116 (765)
T ss_dssp CEEEEEECCSSTTCCEEEEEESSSCEEEEEECSSSTTTTTCCCHHHHHGGGGGGCTTSCCSCEEECTTCCSSSCCEEECC
T ss_pred cEEEEeECCCCcCCCceEEEEECCEEEEEEcCCCCCCCCCccCcchhhhHHhhcCCCcccCCceeCCCCCCCCCceEEee
Confidence 37799999999999999999999999999999999999999999999999999 5999999999964 48999999
Q ss_pred HHHHHHHHHHHhcc-------CCEEEEeCCcCCHHHHHHHHHHH-HHhCCCccccCC-CCCcchhhhhhhhhccC--C-C
Q psy11935 976 WEDALIAVAQKLQT-------SEVAGVVGSLADAEAMVALKDLL-NKLGSEDLYTEY-AFPLEGAGTDLRANYLL--N-N 1043 (1334)
Q Consensus 976 WdeAl~~ia~~L~~-------~~i~~~~g~~~~~e~~~~~~~l~-~~lGs~~~~~~~-~~~~~~~~~~~~~~~~~--~-~ 1043 (1334)
|||||+.||++|++ ++|++++| .+.+ +++++|+ +.+|++|+++.. ++|+.+...++...||. . +
T Consensus 117 WdeAl~~ia~~l~~i~~~~G~~~i~~~~~--~~~e--~~~~~~~r~~~Gt~n~~~~~~~~c~~~~~~~~~~~~G~~~~~~ 192 (765)
T 2vpz_A 117 WEEALDHIAKKMLEIREKYGPEAIAFFGH--GTGD--YWFVDFLPAAWGSPNAAKPSVSLCTAPREVASQWVFGRPIGGH 192 (765)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGGGCEEEEC--STTH--HHHTTTHHHHHTCCCEECHHHHTTTHHHHHHHHHHSSSCCCSS
T ss_pred HHHHHHHHHHHHHHHHHhhCCcEEEEEcC--CCcH--HHHHHHHHHhcCCCccCCCcccccccHHHHHHHhhcCCCCCCC
Confidence 99999999999987 56887777 3444 6788999 899999999877 77877655555555553 2 4
Q ss_pred CcccccccCeEEEEcCCccccch-hHHHHHHHHHhhCCCeEEEEccCCCCcccccc------CCCcHHHHHHHH------
Q psy11935 1044 KIAGAEEADLILLIGTNPRFEAP-LFNARIRKGYLTNELDVAYIGPKVDLRYDYEH------LGESADLIKQLA------ 1110 (1334)
Q Consensus 1044 ~~~die~ad~Il~~G~np~~~~p-~~~~rir~a~~~~g~kiivIdp~~~~t~~~a~------~Gtd~a~l~~l~------ 1110 (1334)
++.|+++||+||+||+||.+++| .++.+++++. ++|+|||||||+.+.|+..++ ||||.+|+.+|+
T Consensus 193 ~~~d~~~ad~il~~G~n~~~~~p~~~~~~~~~a~-~~G~klividPr~t~ta~~Ad~~l~irPGtD~al~~al~~~ii~~ 271 (765)
T 2vpz_A 193 EPIDWENARYIVLIGHHIGEDTHNTQLQDFALAL-KNGAKVVVVDPRFSTAAAKAHRWLPIKPGTDTALLLAWIHVLIYE 271 (765)
T ss_dssp CCCCGGGCSEEEEESCCBTTBCCHHHHHHHHHHH-HTTCEEEEECSBCCTTGGGCSEEECCCTTCHHHHHHHHHHHHHHT
T ss_pred CccccccCCEEEEEeCChhhcCChHHHHHHHHHH-HCCCEEEEECCCCCcchhhCCeEeCCCCCcHHHHHHHHHHHHHHc
Confidence 67999999999999999999999 8999999986 689999999999999988765 999999987764
Q ss_pred --------------------------------------hcHHHHHHHHh-cCCCcEEEEcCCc---ccHHHHHHHHH---
Q psy11935 1111 --------------------------------------SGSHPFSKKLS-AAKKPLIVVGADI---SDGAAVLALVQ--- 1145 (1334)
Q Consensus 1111 --------------------------------------~g~~~~A~~l~-~a~~~~ii~G~~~---~~g~~~~~al~--- 1145 (1334)
+.|+++|+.|+ .+++++|++|+|+ .+|..+.+++.
T Consensus 272 ~l~D~~fi~~~t~gf~~l~~~v~~~tpe~~a~itGv~~~~I~~lA~~~a~~a~~~~i~~g~g~~~~~~g~~~~~a~~~L~ 351 (765)
T 2vpz_A 272 DLYDKEYVAKYTVGFEELKAHVKDFTPEWAEKHTEIPAQVIREVAREMAAHKPRAVLPPTRHNVWYGDDTYRVMALLYVN 351 (765)
T ss_dssp TCSCHHHHHHHEECCHHHHHHTSSCCHHHHHHHHCSCHHHHHHHHHHHHTTTTSEECCCCSCCCSSTTTHHHHHHHHHHH
T ss_pred CCcCHHHHHHHccHHHHHHHHhhcCCHHHHHHHHCcCHHHHHHHHHHHHhhCCCEEEEcccccccccchHHHHHHHHHHH
Confidence 11567899999 7888999999987 56666665554
Q ss_pred HHHHhhcCCCCCCCCCcc----cc--cchhhhh--hhh----------hhh----cCCC---cc-----hhhHhcC---C
Q psy11935 1146 QLAAKVTCESDVPCDWKV----LN--ILQKAAS--QVA----------ALD----IGYK---PG-----TSAIREK---P 1192 (1334)
Q Consensus 1146 ~l~~~~g~~Gg~~~~~~~----~~--~l~~~~n--~~G----------~~~----~g~~---pg-----~~~i~~g---~ 1192 (1334)
.|+|++|++||...++.. +. .++.... ..+ .+. .|.. .+ ++++.+| +
T Consensus 352 ~l~G~ig~~Gg~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~l~~~~~~g~py~ 431 (765)
T 2vpz_A 352 VLLGNYGRPGGFYIAQSPYLEKYPLPPLPLEPAAGGCSGPSGGDHEPEGFKPRADKGKFFARSTAIQELIEPMITGEPYP 431 (765)
T ss_dssp HHHTCBTSTTTBCCCBCCCCCCCCCCCCSSCCCCCCSSSCSSTTTTTSSSCCCTTTTSSSSCSCCTTTTTSHHHHCCSSC
T ss_pred HHhCCCCCCCCcccCCCCCcccCChhhcCCCCcccccccccccccccccCCcccccccccCCcccHHHHHHHHHcCCCCC
Confidence 455666777753221100 10 0100000 001 000 0010 01 3455666 4
Q ss_pred CcEEEEECCChhhh------HHhhcCCCceEEEEcCCCChhhccccEEecCCCCCCCCccc-cc--CCCceEEeccccCC
Q psy11935 1193 PKVLFLLGADEGSI------SRDDVGKDCFIIYQGHHGDHGASIADAILPGAAYTEKQSTY-VN--TEGRAQQTLTAVTP 1263 (1334)
Q Consensus 1193 ik~l~~~g~np~~~------~~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~Gt~-~n--~egrvq~~~~av~P 1263 (1334)
+|++|++|+||+.. ..++|++++|+|++|+|+|+|+.+||||||+++|+|++|++ ++ .++++|.++|+|+|
T Consensus 432 ik~l~~~g~Np~~~~p~~~~~~~aL~~ld~~V~~d~~~teTa~~ADvvLP~a~~~E~~g~~~~~~~~~~~v~~~~~~v~P 511 (765)
T 2vpz_A 432 IKGLFAYGINLFHSIPNVPRTKEALKNLDLYVAIDVLPQEHVMWADVILPEATYLERYDDFVLVAHKTPFIQLRTPAHEP 511 (765)
T ss_dssp CCCEEEESCCHHHHSSCHHHHHHHHHTCSCEEEEESSCCTTTTTCSSEEEBCCTTSCCCCCEEECBSSCEEECCCCSSCC
T ss_pred ceEEEEcCCCccccCCCHHHHHHHHhcCCeEEEEecCCCchHHhcCEeecCCcccccccccccCCCCCceEEEeecccCC
Confidence 99999999999653 47899999999999999999999999999999999999996 33 46799999999999
Q ss_pred CCCcccHHHHHHHHHHHhcC
Q psy11935 1264 PGLAREDWKIIRALSEGVSS 1283 (1334)
Q Consensus 1264 ~gear~dw~Il~~La~~lg~ 1283 (1334)
+|++|+||+|+++||++||.
T Consensus 512 ~ge~r~d~~I~~~La~~lg~ 531 (765)
T 2vpz_A 512 LFDTKPGWWIARELGLRLGL 531 (765)
T ss_dssp CTTCBCHHHHHHHHHHHTTC
T ss_pred CCCCcCHHHHHHHHHHHhCC
Confidence 99999999999999999993
No 9
>1g8k_A Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.52.2.2 c.81.1.1 PDB: 1g8j_A*
Probab=100.00 E-value=1.7e-53 Score=555.96 Aligned_cols=376 Identities=17% Similarity=0.153 Sum_probs=298.0
Q ss_pred cccCCCCcceeeeeecccCCCCCceEEEe-----------------------------------------eCCEEE--Ee
Q psy11935 894 SFTARPWETRKTESVDVLDAVGSNIIVST-----------------------------------------RTGEVL--RV 930 (1334)
Q Consensus 894 ~~~~r~we~~~~~s~c~~C~~gC~i~v~v-----------------------------------------~~g~v~--ri 930 (1334)
++..|||+++.++|+|++|++||++.|++ ++|+|+ ||
T Consensus 6 ~~~~~~~~~~~~~t~C~~C~~gC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~v~i 85 (825)
T 1g8k_A 6 RITLPPANAQRTNMTCHFCIVGCGYHVYKWPELEEGGRAPEQNALGLDFRKQLPPLAVTLTPAMTNVVTEHDGARYDIMV 85 (825)
T ss_dssp BCCCCBTTCEEEEEECSSBTTCCEEEEEEEETTCCCCSSGGGBTTCCCTTSCCCTTSCCCCGGGEEEEECTTSCEEEEEE
T ss_pred ccccCCCCceEEeeeCCCccCCcCEEEEEccccccccccccccccccccccccccccccccccccccccccCCeEEEEEE
Confidence 46789999999999999999999999998 999998 99
Q ss_pred cCCCCCCCCccccccccccccccc-cc-----cccCCceEecCCCCeeecCHHHHHHHHHHHhcc-------CCEEEE--
Q psy11935 931 LPRLNEDINEEWLADKGRFAYDGL-KR-----QRLLTPFVRNCDGQLVATEWEDALIAVAQKLQT-------SEVAGV-- 995 (1334)
Q Consensus 931 ~p~~~~~vn~g~lC~kgr~~~~~l-~~-----~Rl~~PliR~~~g~~~~iSWdeAl~~ia~~L~~-------~~i~~~-- 995 (1334)
+|++++|+|+||+|+||+++++.+ +| +||++||+|.+ |+|++|||||||+.||++|++ ++++++
T Consensus 86 ~g~~~~p~n~G~lC~KG~~~~~~~y~p~~~~~dRL~~Pl~R~~-g~~~~iSWdeAl~~ia~~l~~i~~~~G~~~i~~~~~ 164 (825)
T 1g8k_A 86 VPDKACVVNSGLSSTRGGKMASYMYTPTGDGKERLSAPRLYAA-DEWVDTTWDHAMALYAGLIKKTLDKDGPQGVFFSCF 164 (825)
T ss_dssp EECTTCTTTTTCCCTTGGGGGGGSCCSSSTTTTCCCSCEEECS-SSEEECCHHHHHHHHHHHHHHHHHHTCGGGEEEEEC
T ss_pred ecCCCCCCCCCccCcchhhHHHHhccccCCccccccCCeEecC-CceEEccHHHHHHHHHHHHHHHHHhhCCceEEEEec
Confidence 999999999999999999999998 46 89999999986 899999999999999999987 578876
Q ss_pred --eCCcCCHHHHHHHHHHH-HHhCCCccccCCC-----CCcchhhhhhhhhccCCCCcccccccCeEEEEcCCccccchh
Q psy11935 996 --VGSLADAEAMVALKDLL-NKLGSEDLYTEYA-----FPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPL 1067 (1334)
Q Consensus 996 --~g~~~~~e~~~~~~~l~-~~lGs~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~die~ad~Il~~G~np~~~~p~ 1067 (1334)
+|+..++|..|++++|+ ..+|++|+++... .|..+. .++ ...++.++.|+++||+||+||+||.+++|+
T Consensus 165 ~~~s~~~~~e~~~~~~k~~~~~lGt~n~~~~~r~~~~~~c~~~~--~~G-~~~~~~~~~D~~~ad~il~~G~Np~~~~p~ 241 (825)
T 1g8k_A 165 DHGGAGGGFENTWGTGKLMFSAIQTPMVRIHNRPAYNSECHATR--EMG-IGELNNAYEDAQLADVIWSIGNNPYESQTN 241 (825)
T ss_dssp CCSSTTCSHHHHHHHHHHHHTTTCCCCEEETTBSSSCCTTHHHH--HTT-CCSCCSCHHHHHHCSEEEEESCCHHHHSHH
T ss_pred ccccCCcccHHHHHHHHHHHHhcCCceecccccccccceeeccc--ccc-CCCCCCCHHHHHhCCEEEEeCCChHHhCcc
Confidence 45667899988888776 5899999987643 444321 111 123467889999999999999999999998
Q ss_pred HHH-HHHHH--------Hh-------hCCCeEEEEccCCCCccccc--------------cCCCcHHHHHHHHh------
Q psy11935 1068 FNA-RIRKG--------YL-------TNELDVAYIGPKVDLRYDYE--------------HLGESADLIKQLAS------ 1111 (1334)
Q Consensus 1068 ~~~-rir~a--------~~-------~~g~kiivIdp~~~~t~~~a--------------~~Gtd~a~l~~l~~------ 1111 (1334)
++. ++..+ .+ ++|+|||||||+.+.|+..+ .||||.+++.+|+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~klivIDPr~t~ta~~Ad~~~~~~a~~~l~irPGtD~al~~al~~~ii~~~ 321 (825)
T 1g8k_A 242 YFLNHWLPNLQGATTSKKKERFPNENFPQARIIFVDPRETPSVAIARHVAGNDRVLHLAIEPGTDTALFNGLFTYVVEQG 321 (825)
T ss_dssp HHHHTHHHHHHTTTHHHHHHHCTTCCCCCCEEEEECSSCCHHHHHHHHHHCGGGEEEECCCTTCHHHHHHHHHHHHHHHT
T ss_pred hHhhhHHHhhhhhHHHHhhhhccccccCCCEEEEEeCCCCchhhhhhhccccccceEeccCCCcHHHHHHHHHHHHHHcC
Confidence 653 22221 11 25899999999999886542 28999999877641
Q ss_pred -------------------------------------cHHHHHHHHhcCC------CcEEEEcCCc---ccHHHHHHHHH
Q psy11935 1112 -------------------------------------GSHPFSKKLSAAK------KPLIVVGADI---SDGAAVLALVQ 1145 (1334)
Q Consensus 1112 -------------------------------------g~~~~A~~l~~a~------~~~ii~G~~~---~~g~~~~~al~ 1145 (1334)
.|+++|+.|++++ +++|++|+|+ .+|....+++.
T Consensus 322 l~D~~Fv~~~t~Gfd~~~~~~~~tpe~~a~itGv~~~~I~~~A~~~a~a~~~~~~~~~~i~~g~g~~~~~~g~~~~~ai~ 401 (825)
T 1g8k_A 322 WIDKPFIEAHTKGFDDAVKTNRLSLDECSNITGVPVDMLKRAAEWSYKPKASGQAPRTMHAYEKGIIWGNDNYVIQSALL 401 (825)
T ss_dssp CSCHHHHHHHEECHHHHHHHTCCCHHHHHHHHCCCHHHHHHHHHHHHSCCTTSCCCCEEEEECHHHHTSTTHHHHHHHHH
T ss_pred CcCHHHHHHhcCCHHHHHhhccCCHHHHHHHHCcCHHHHHHHHHHHHhcccccCCCceEEEEccchhhhhcCHHHHHHHH
Confidence 1467899999874 6888999776 56766666655
Q ss_pred HHH---HhhcCCCCCCCCCcccccchhhhhhhhhhhcCCCcc------hhhHhcCCCcEEEEECCChhhh------HHhh
Q psy11935 1146 QLA---AKVTCESDVPCDWKVLNILQKAASQVAALDIGYKPG------TSAIREKPPKVLFLLGADEGSI------SRDD 1210 (1334)
Q Consensus 1146 ~l~---~~~g~~Gg~~~~~~~~~~l~~~~n~~G~~~~g~~pg------~~~i~~g~ik~l~~~g~np~~~------~~~a 1210 (1334)
+|+ |++|++||+ ++++.+.. .|....+ .|| .+.+..|+++++|++|.||+.. ..++
T Consensus 402 ~L~~l~Gnig~~Ggg------~~~~~~~~--~g~~~~~-~~g~~~~~~~~~~~~g~~k~l~~~g~Np~~~~p~~~~~~~a 472 (825)
T 1g8k_A 402 DLVIATHNVGRRGTG------CVRMGGHQ--EGYTRPP-YPGDKKIYIDQELIKGKGRIMTWWGCNNFQTSNNAQALREA 472 (825)
T ss_dssp HHHHHTTCSSSTTCC------EEECCSBC--BCCEECC-CSCSSCCCHHHHHHTTCCSEEEEESCCHHHHSTTHHHHHHH
T ss_pred HHHHHhCCCCCCCCC------cCCCCcCC--CCCCCCC-CCCcchhhhhhHhhCCCceEEEEEecCcccCCcCHHHHHHH
Confidence 554 555566543 22222111 1111001 122 2345678999999999999542 2445
Q ss_pred cCC-------------------------------CceEEEEcCCCChhhccccEEecCCCCCCCCcccccCCCceEEecc
Q psy11935 1211 VGK-------------------------------DCFIIYQGHHGDHGASIADAILPGAAYTEKQSTYVNTEGRAQQTLT 1259 (1334)
Q Consensus 1211 l~k-------------------------------~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~Gt~~n~egrvq~~~~ 1259 (1334)
|.+ .+|+|++|+|+|+|+.+||||||+++|+|++|+++|++|++|.++|
T Consensus 473 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~fvVv~d~~~teTa~~ADvVLPaa~~~E~~g~~~~~~~~v~~~~~ 552 (825)
T 1g8k_A 473 ILQRSAIVKQAMQKARGATTEEMVDVIYEATQNGGLFVTSINLYPTKLAEAAHLMLPAAHPGEMNLTSMNGERRIRLSEK 552 (825)
T ss_dssp HHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHTTTCCEEEEEESSCCGGGGTCSEEEEBCCBTTBCEEEECTTCEEEEECC
T ss_pred HHccchhhhhhhhcccCcchhHHHHHHHHHhccCCCEEEEEecccCchHhhCeEEeCCCCCCcCCceEecCcceEEEeec
Confidence 543 3799999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccHHHHHHHHHHHhc
Q psy11935 1260 AVTPPGLAREDWKIIRALSEGVS 1282 (1334)
Q Consensus 1260 av~P~gear~dw~Il~~La~~lg 1282 (1334)
+|+|+|++|+||+|++.||++||
T Consensus 553 ~v~P~gear~d~~Il~~La~~lg 575 (825)
T 1g8k_A 553 FMDPPGTAMADCLIAARIANALR 575 (825)
T ss_dssp CSCCSTTCBCHHHHHHHHHHHHH
T ss_pred ccCCccccCCHHHHHHHHHHHHh
Confidence 99999999999999999999996
No 10
>4aay_A AROA; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=100.00 E-value=2.3e-52 Score=539.18 Aligned_cols=378 Identities=19% Similarity=0.183 Sum_probs=293.2
Q ss_pred CCCCcceeeeeecccCCCCCceEEEe-----------------------------------------eCCEEEE--ecCC
Q psy11935 897 ARPWETRKTESVDVLDAVGSNIIVST-----------------------------------------RTGEVLR--VLPR 933 (1334)
Q Consensus 897 ~r~we~~~~~s~c~~C~~gC~i~v~v-----------------------------------------~~g~v~r--i~p~ 933 (1334)
--|++.+++.++|.+|.+|||+.|++ +||++++ |.|+
T Consensus 12 ~~~~~~~~~~~~c~~c~~gcg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~dG~~v~v~i~gd 91 (845)
T 4aay_A 12 IIPADAKKHNVTCHFCIVGCGYHAYTWPINKQGGTDPQNNIFGVDLSEQQQAESDAWYSPSMYNVVKQDGRDVHVVIKPD 91 (845)
T ss_dssp CCCTTCEEEEEECSSBTTCCEEEEEEEETTCCCCSSGGGSTTCSCTTSCCCTTCSSCCCGGGEEEEEETTEEEEEEEEEC
T ss_pred CCCCCceeeccccceeeecccceeeecCCCccCCCCccccccCCCccccCCccchhcccccEEEEEeECCEEEEEEEeCC
Confidence 45799999999999999999999988 8999999 8999
Q ss_pred CCCCCCccccccccccccccc-cc------cccCCceEecCCCCeeecCHHHHHHHHHHHhcc-------CCEEEEe---
Q psy11935 934 LNEDINEEWLADKGRFAYDGL-KR------QRLLTPFVRNCDGQLVATEWEDALIAVAQKLQT-------SEVAGVV--- 996 (1334)
Q Consensus 934 ~~~~vn~g~lC~kgr~~~~~l-~~------~Rl~~PliR~~~g~~~~iSWdeAl~~ia~~L~~-------~~i~~~~--- 996 (1334)
+++|+|+|++|+||++.++.+ +| +||++||+|.+ |+|++|||||||+.||++|++ ++++++.
T Consensus 92 ~~~p~n~G~lC~KG~~~~~~~y~p~~~~~~dRL~~Pl~R~~-g~~~~iSWdeAld~iA~kl~~i~~~~Gp~sv~~~~~~~ 170 (845)
T 4aay_A 92 HECVVNSGLGSVRGARMAETSFSEARNTQQQRLTDPLVWRY-GQMQPTSWDDALDLVARVTAKIVKEKGEDALIVSAFDH 170 (845)
T ss_dssp TTCTTTTTCCCTTGGGTTTTSCBTTTTBCTTSCCSCEEEET-TEEEECCHHHHHHHHHHHHHHHHHHHCGGGEEEEECCC
T ss_pred CCCCCCCCeeChhhHhHHHhhcCccccCccCcccCCeEecC-CCEeEeCHHHHHHHHHHHHHHHHHhcCCceEEEEEecC
Confidence 999999999999999999887 47 99999999986 999999999999999999987 6788763
Q ss_pred -CCcCCHHHHHHHHHHH-HHhCCCccccCCCCCcchhhhhhhhhcc---CCCCcccccccCeEEEEcCCccccchhHHH-
Q psy11935 997 -GSLADAEAMVALKDLL-NKLGSEDLYTEYAFPLEGAGTDLRANYL---LNNKIAGAEEADLILLIGTNPRFEAPLFNA- 1070 (1334)
Q Consensus 997 -g~~~~~e~~~~~~~l~-~~lGs~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~die~ad~Il~~G~np~~~~p~~~~- 1070 (1334)
|+..++|..|.+.+|+ ..+|++|++++...|+.+...+.+ .+| ++.++.|+++||+||+||+||.+++|+++.
T Consensus 171 g~~~~~~e~~y~~~k~~~~~lGt~ni~~~~r~~~ss~c~~~~-~~G~~~~~~~~~D~~~ad~il~~G~Np~~~~p~~~~~ 249 (845)
T 4aay_A 171 GGAGGGYENTWGTGKLYFEAMKVKNIRIHNRPAYNSEVHGTR-DMGVGELNNCYEDAELADTIVAVGTNALETQTNYFLN 249 (845)
T ss_dssp CSTTCCHHHHHHHHHHHHTTCCCCSEEESSSSSSCCSCHHHH-HTTCCSCCSCTHHHHHCSEEEEESCCHHHHSHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHhcCCCeeeccCcCccchHHHHHH-HHcCCCCCCChhHHhhCCEEEEEeCChhHhCcchHHH
Confidence 4557889999888887 479999998876655432211111 222 356889999999999999999999997631
Q ss_pred ----HHH-----HHH------hhCCCeEEEEccCCCCccccc--------------cCCCcHHHHHHHH-----------
Q psy11935 1071 ----RIR-----KGY------LTNELDVAYIGPKVDLRYDYE--------------HLGESADLIKQLA----------- 1110 (1334)
Q Consensus 1071 ----rir-----~a~------~~~g~kiivIdp~~~~t~~~a--------------~~Gtd~a~l~~l~----------- 1110 (1334)
.++ ++. +++|+||||||||.+.|+..+ .||||.+|+.+|+
T Consensus 250 h~~~~~~~~~~~~~k~~~~~~~~~GaklIvIDPr~t~ta~~Ad~~~~~~~~~~l~irPGTD~AL~~a~~~~ii~egl~D~ 329 (845)
T 4aay_A 250 HWIPNLRGESLGKKKELMPEEPHEAGRIIIVDPRRTVTVNACEQTAGADNVLHLAINSGTDLALFNALFTYIADKGWVDR 329 (845)
T ss_dssp THHHHHHTTTHHHHHHHSCSSCCCCCEEEEECSSCCHHHHHHHHHHCGGGEEEECCCTTCHHHHHHHHHHHHHHHTCSCH
T ss_pred HHHHHHHHHHHHHHhhhccccccCCCEEEEEeCCCCHHHHHHHhhcccccceEEeecCCcHHHHHHHHHHHHHHcCCccH
Confidence 111 111 126999999999999886422 3999999876653
Q ss_pred -------------------------------hc-------------------------HHHHHHHHhcCC------CcEE
Q psy11935 1111 -------------------------------SG-------------------------SHPFSKKLSAAK------KPLI 1128 (1334)
Q Consensus 1111 -------------------------------~g-------------------------~~~~A~~l~~a~------~~~i 1128 (1334)
.| |+++|+.|++++ ++++
T Consensus 330 ~Fi~~~t~~~~~~~p~~~~~~~~~~~~~~~~~gfe~~~~~~~~tpe~aa~itGv~~~~I~~~A~~~a~~~~~~~~~~~~~ 409 (845)
T 4aay_A 330 DFIDKSTLREGTARPPLYPARGVSEANPGHLSSFEDAVEGCRMSIEEAAEITGLDAAQIIKAAEWIGMPKEGGKRRRVMF 409 (845)
T ss_dssp HHHHHHBCCCCCCCCTTTTTSCSBTTBCSEEECHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCCTTSCCCCEEE
T ss_pred HHHHHHhcccccccccccccccccccccccccCHHHHHHhccCCHHHHHHHHCcCHHHHHHHHHHHhhccccccccceEE
Confidence 34 345789999876 4588
Q ss_pred EEcCCc---ccHHHHHHHHH---HHHHhhcCCCCCCCCCcccccchhhhhhhhh---hhcCCCcc--hhhHhcCCCcEEE
Q psy11935 1129 VVGADI---SDGAAVLALVQ---QLAAKVTCESDVPCDWKVLNILQKAASQVAA---LDIGYKPG--TSAIREKPPKVLF 1197 (1334)
Q Consensus 1129 i~G~~~---~~g~~~~~al~---~l~~~~g~~Gg~~~~~~~~~~l~~~~n~~G~---~~~g~~pg--~~~i~~g~ik~l~ 1197 (1334)
++|+|+ .+|....+++. .|+|++|++|++.. ++.+..+.... ...|..+. .+++..|+++++|
T Consensus 410 ~~~~Gi~~~~~g~~~~~ai~~L~lltGniG~pGgg~~------~~~g~~~g~~~p~~~~pg~~~~~~~~~~~~g~~k~~~ 483 (845)
T 4aay_A 410 GYEKGLIWGNDNYRTNGALVNLALATGNIGRPGGGVV------RLGGHQEGYVRPSDAHVGRPAAYVDQLLIGGQGGVHH 483 (845)
T ss_dssp EECHHHHTSTTHHHHHHHHHHHHHHTTCSSSTTCCEE------ECCSBCBCCCCSCCGGGCSSCCCHHHHHHTTCCSEEE
T ss_pred EecchhhcccChHHHHHHHHHHHHHhCCCCCCCCccc------CCCCCCCCCcCccccCCCcchhhhhhhhhcCcceEEE
Confidence 899887 56766655554 45566677765422 11111000000 01111111 3456789999999
Q ss_pred EECCChhhh------HH------------------------------hhcCC-CceEEEEcCCCChhhccccEEecCCCC
Q psy11935 1198 LLGADEGSI------SR------------------------------DDVGK-DCFIIYQGHHGDHGASIADAILPGAAY 1240 (1334)
Q Consensus 1198 ~~g~np~~~------~~------------------------------~al~k-~~fvV~~d~~~~eta~~ADvVLP~a~~ 1240 (1334)
++|.||+.. .. ++|.+ ++|+|++|+|+|+||.+||||||+++|
T Consensus 484 v~g~Np~~s~p~~~~~~~al~~~~~~v~~~l~~~~~~~~~~~~~~v~~aL~~~~dfvVv~D~f~TeTA~~ADvVLPaa~~ 563 (845)
T 4aay_A 484 IWGCDHYKTTLNAHEFKRVYKKRTDMVKDAMSAAPYGDREAMVNAIVDAINQGGLFAVNVDIIPTKIGEACHVILPAATS 563 (845)
T ss_dssp EESCCHHHHSTTHHHHHHHHHHHHHHHHHHHHTSCSSSHHHHHHHHHHHHHTTCCEEEEEESSCCSGGGGCSEEEEEECB
T ss_pred EeccCccccCcCHHHHHHHHhhcchhHHHHHhhccccchhhHHHHHHHHhccCCCeEEEEecccChhHhhccEEcccCcc
Confidence 999999642 11 22333 489999999999999999999999999
Q ss_pred CCCCcccccCCCceEEeccccCCCCCcccHHHHHHHHHHHhc
Q psy11935 1241 TEKQSTYVNTEGRAQQTLTAVTPPGLAREDWKIIRALSEGVS 1282 (1334)
Q Consensus 1241 ~Ek~Gt~~n~egrvq~~~~av~P~gear~dw~Il~~La~~lg 1282 (1334)
+|++|+++|.+++++..+|+|+|+|++|+||+|+++||++||
T Consensus 564 ~Ek~gt~~n~~r~v~~~~~~i~p~gear~d~~i~~~lA~rLg 605 (845)
T 4aay_A 564 GEMNLTSMNGERRMRLTERYMDPPGQSMPDCLIAARLANTME 605 (845)
T ss_dssp TTBCEEEECTTCEEEEECCCSCCSTTCEEHHHHHHHHHHHHH
T ss_pred cccCceEecCCceEEEeecccCCCccCCcHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999996
No 11
>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=100.00 E-value=1.3e-51 Score=544.73 Aligned_cols=375 Identities=15% Similarity=0.102 Sum_probs=300.0
Q ss_pred eeeeeec-ccCC--CCCceEEEeeCCEEEEecCC-------CCCCCCccccccccccccccc-cccccCCceEecC---C
Q psy11935 903 RKTESVD-VLDA--VGSNIIVSTRTGEVLRVLPR-------LNEDINEEWLADKGRFAYDGL-KRQRLLTPFVRNC---D 968 (1334)
Q Consensus 903 ~~~~s~c-~~C~--~gC~i~v~v~~g~v~ri~p~-------~~~~vn~g~lC~kgr~~~~~l-~~~Rl~~PliR~~---~ 968 (1334)
+.+.|+| ++|+ +||++.|+|++|+|++|+|+ +++|+|+|++|+||++.++.+ +|+||++||+|++ +
T Consensus 76 ~~~~stc~~~C~~~~~C~i~v~v~dG~v~~v~g~~~~p~~~p~~p~n~g~~C~kG~~~~~~~y~p~Rl~~Pl~R~g~rG~ 155 (976)
T 2ivf_A 76 KVNWGSHLNICWPQGSCKFYVYVRNGIVWREEQAAQTPACNVDYVDYNPLGCQKGSAFNNNLYGDERVKYPLKRVGKRGE 155 (976)
T ss_dssp EEEEECCCSCCSSCCCCCEEEEEETTEEEEEEECCCCCCSSTTSCCCCSCCCTTGGGTHHHHTSTTBCCSCEEECSSTTS
T ss_pred EEEEeeeCCCCCCCCCCceEEEEECCEEEEEEcCCCCCCCCCCCCCCCCCcChhhhhHHHHhcCcccccCCeeeccCCCC
Confidence 6778887 6899 99999999999999999998 778899999999999999998 5999999999964 5
Q ss_pred CCeeecCHHHHHHHHHHHhcc-------CCEEEEeCCc-CCHHHHHHHHHHHHHhCCCccccCCCCCcchhhhhhhhhcc
Q psy11935 969 GQLVATEWEDALIAVAQKLQT-------SEVAGVVGSL-ADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYL 1040 (1334)
Q Consensus 969 g~~~~iSWdeAl~~ia~~L~~-------~~i~~~~g~~-~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1334)
|+|++||||||+++||++|++ ++++++.|.. .+.+..+++++|++.+|++|+++...++. ...++...||
T Consensus 156 g~~~~iSWdeAl~~IA~~l~~i~~~~Gp~~i~~~~~~~~~~~~~~~~~~rf~~~lG~~n~~~~~~~~~--~~~a~~~~~G 233 (976)
T 2ivf_A 156 GKWKRVSWDEAAGDIADSIIDSFEAQGSDGFILDAPHVHAGSIAWGAGFRMTYLMDGVSPDINVDIGD--TYMGAFHTFG 233 (976)
T ss_dssp CCEEECCHHHHHHHHHHHHHHHHHHHGGGGEEECCCCSTTCHHHHHHHHHHHHHHTCBEECHHHHHTC--CCHHHHHHHS
T ss_pred CCeEEecHHHHHHHHHHHHHHHHHHhCCceEEEEecCCccchHHHHHHHHHHHHhCCcccCccccccc--hhhhhhheec
Confidence 899999999999999999987 5788766644 44555678899999999999885544322 1223333444
Q ss_pred ---CCCCcccccccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCCCCcccccc------CCCcHHHHHHHH-
Q psy11935 1041 ---LNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEH------LGESADLIKQLA- 1110 (1334)
Q Consensus 1041 ---~~~~~~die~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~~~t~~~a~------~Gtd~a~l~~l~- 1110 (1334)
.++++.|+++||+||+||+||.+++|..+.+++++. ++|+|||||||+++.|+..++ ||||.+|+.+|+
T Consensus 234 ~~~~~~~~~D~~nad~Il~~G~N~~~~~p~~~~~~~~ar-~~GakvivVDPr~t~ta~~AD~wl~irPGTD~Al~~am~~ 312 (976)
T 2ivf_A 234 KMHMGYSADNLLDAELIFMTCSNWSYTYPSSYHFLSEAR-YKGAEVVVIAPDFNPTTPAADLHVPVRVGSDAAFWLGLSQ 312 (976)
T ss_dssp CCCCBCCGGGGGGCSEEEEESCCHHHHCTTTHHHHHHHH-HHTCEEEEECSSCCTTGGGCSEEECCCTTCHHHHHHHHHH
T ss_pred CCCCCCChhhHhhCcEEEEeCCChhHcccHHHHHHHHHH-HcCCEEEEECCCCCcchhhcCeEeccCCCcHHHHHHHHHH
Confidence 356789999999999999999999999999999986 579999999999999998875 999999877653
Q ss_pred -----------------hc-------------------------------------------------------------
Q psy11935 1111 -----------------SG------------------------------------------------------------- 1112 (1334)
Q Consensus 1111 -----------------~g------------------------------------------------------------- 1112 (1334)
.|
T Consensus 313 ~ii~e~l~D~~fv~~~t~g~~lv~~~~g~~l~~~d~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~l~g~~~~~g~~ 392 (976)
T 2ivf_A 313 VMIDEKLFDRQFVCEQTDLPLLVRMDTGKFLSAEDVDGGEAKQFYFFDEKAGSVRKASRGTLKLDFMPALEGTFSARLKN 392 (976)
T ss_dssp HHHHTTCSCHHHHHHHBSTTSEEETTTCSBCBHHHHHSCCTTCEEEEETTTTEEEEECSSCCCCSSCCCCSCEEEEECTT
T ss_pred HHHHcCCccHHHHHHhcCCceEEecCCCcccchhhccccCCCceEEEEcCCCCeecCcccccccccCccceeeEEEecCC
Confidence 11
Q ss_pred -----------------------------------HHHHHHHHhcCCCcEEEEcCCc---ccHHHHHHHHHHHH---Hhh
Q psy11935 1113 -----------------------------------SHPFSKKLSAAKKPLIVVGADI---SDGAAVLALVQQLA---AKV 1151 (1334)
Q Consensus 1113 -----------------------------------~~~~A~~l~~a~~~~ii~G~~~---~~g~~~~~al~~l~---~~~ 1151 (1334)
|.++|+.|++++ ++|++|+|+ .+|.++.+++.+|+ |++
T Consensus 393 g~~~~~~t~f~~l~~~~~~~tpe~aa~itGVp~~~I~~lAr~~a~~~-~~i~~g~G~~~~~~g~~~~rai~~L~~l~Gni 471 (976)
T 2ivf_A 393 GKTIQVRTVFEGLREHLKDYTPEKASAKCGVPVSLIRELGRKVAKKR-TCSYIGFSSAKSYHGDLMERSLFLAMALSGNW 471 (976)
T ss_dssp SCEEEEEEHHHHHHHHGGGGSHHHHHHHHCCCHHHHHHHHHHHHHSC-EEEEECTTTTTBTTHHHHHHHHHHHHHHTTCS
T ss_pred CceeeeeeHHHHHHHHhhcCCHHHHHHHHCcCHHHHHHHHHHHHhcc-ceeeecccccchhhHHHHHHHHHHHHHHhCCC
Confidence 466899999998 999999988 57887777766655 555
Q ss_pred cCCCCCCCCCcccccchhhhhhhhh------------------------------------------h------------
Q psy11935 1152 TCESDVPCDWKVLNILQKAASQVAA------------------------------------------L------------ 1177 (1334)
Q Consensus 1152 g~~Gg~~~~~~~~~~l~~~~n~~G~------------------------------------------~------------ 1177 (1334)
|.+||+...+. .+..+..+..|+ .
T Consensus 472 g~~Ggg~~~~~--~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 549 (976)
T 2ivf_A 472 GKPGTGAFAWA--YSDDNMVYLGVMSKPTAQGGMDELHQMAEGFNKRTLEADPTSTDEMGNIEFMKVVTSAVGLVPPAMW 549 (976)
T ss_dssp SSTTCCSCBCC--CCCHHHHHHHHCSSCGGGTTTHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHTTEECHHHH
T ss_pred CCCCCccccCC--cCcCCccccccccCcccccccchhccccccccccccccccCHHHHHHhhhccCCCcccccccccccc
Confidence 56665432111 000011010000 0
Q ss_pred ---hc-----------CC--Cc------chhhHhcC--------------CCcEEEEECCChhhh------HHhhc-CCC
Q psy11935 1178 ---DI-----------GY--KP------GTSAIREK--------------PPKVLFLLGADEGSI------SRDDV-GKD 1214 (1334)
Q Consensus 1178 ---~~-----------g~--~p------g~~~i~~g--------------~ik~l~~~g~np~~~------~~~al-~k~ 1214 (1334)
.. +. .+ -.+++..| ++|++|++|+||+.. +.++| .++
T Consensus 550 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~p~~ik~l~i~g~Np~~s~p~~~~~~~al~~kl 629 (976)
T 2ivf_A 550 LYYHVGYDQLWNNKAWTDPALKKSFGAYLDEAKEKGWWTNDHIRPAPDKTPQVYMLLSQNPMRRKRSGAKMFPDVLFPKL 629 (976)
T ss_dssp HHHHSSTHHHHTCGGGSCTTSSSCHHHHHHHHHHTTSSCTTTSCSCTTSCCCEEEEESCCHHHHSTTHHHHHHHTTGGGC
T ss_pred ccCchhhhhhhhhhhccccccchhhHHHHHHHHhcCCcccccccccCCCCCcEEEEEcCCChHhcCCCHHHHHHHHhcCC
Confidence 00 00 00 02345567 899999999999642 47899 999
Q ss_pred ceEEEEcCCCChhhccccEEecCCCCCCCCccccc--CCCceEEeccccCCCCCcccHHHHHHHHHHHhcC
Q psy11935 1215 CFIIYQGHHGDHGASIADAILPGAAYTEKQSTYVN--TEGRAQQTLTAVTPPGLAREDWKIIRALSEGVSS 1283 (1334)
Q Consensus 1215 ~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~Gt~~n--~egrvq~~~~av~P~gear~dw~Il~~La~~lg~ 1283 (1334)
+|+|++|+|+|+|+.+||||||+++|+|++|+++| .++++|.++|+|+|+|++|+||+|++.||++||.
T Consensus 630 d~~Vv~D~~~teTa~~ADiVLPaat~~Ek~g~~~~~~~~~~v~~~~~av~P~gear~d~~I~~~LA~rlg~ 700 (976)
T 2ivf_A 630 KMIFALETRMSSSAMYADIVLPCAWYYEKHEMTTPCSGNPFFTFVDRSVAPPGECREEWDAIALILKKVGE 700 (976)
T ss_dssp SEEEEEESBCCTTGGGCSEEEEBCCTTEEEEECCCCSSSCEEEEEEECSCCSTTCBCHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCccHhhCCEeecCCcccccCCcccCCCCCCeEEEecccCCCCCCCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999 8999999999999999999999999999999984
No 12
>1q16_A Respiratory nitrate reductase 1 alpha chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 3ir7_A* 1y5i_A* 1siw_A* 1y4z_A* 1r27_A* 1y5l_A* 1y5n_A* 3ir6_A* 3ir5_A* 3egw_A*
Probab=100.00 E-value=5.6e-50 Score=525.13 Aligned_cols=214 Identities=15% Similarity=0.051 Sum_probs=179.4
Q ss_pred CcccCCCCcc---------eeeeeecc-cCCCCCceEEEeeCCEEEEecCCCCCC-------CCccccccccccccccc-
Q psy11935 893 YSFTARPWET---------RKTESVDV-LDAVGSNIIVSTRTGEVLRVLPRLNED-------INEEWLADKGRFAYDGL- 954 (1334)
Q Consensus 893 ~~~~~r~we~---------~~~~s~c~-~C~~gC~i~v~v~~g~v~ri~p~~~~~-------vn~g~lC~kgr~~~~~l- 954 (1334)
+.|.+|+||. +.+.|+|+ +|++||++.|+|+||+|+++.|++++| +|++++|+||++.++.+
T Consensus 25 ~~~~~r~we~~yr~~w~~dk~v~stc~~~C~~gC~i~v~VkdG~vv~v~g~~~~P~~~~d~p~n~g~lC~KG~~~~~~~y 104 (1247)
T 1q16_A 25 LLNTNRDWEDGYRQRWQHDKIVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWYLY 104 (1247)
T ss_dssp EECCCCGGGHHHHHHHCCSEEEEECCCSTTSCCCCEEEEEETTEEEEEEECCCSCCCCTTSCCCTTCCCHHHHTGGGGTT
T ss_pred cccCCccHHHhhhccccCCeeEeeeeCCCCCCCCCEEEEEECCEEEEEEcCCCCCcccccCccccCCcCHHHHHHHHhhc
Confidence 4678899987 56889985 899999999999999999999877654 57789999999999998
Q ss_pred cccccCCceEec-------------------------------------CCCCeeecCHHHHHHHHHHHhcc-------C
Q psy11935 955 KRQRLLTPFVRN-------------------------------------CDGQLVATEWEDALIAVAQKLQT-------S 990 (1334)
Q Consensus 955 ~~~Rl~~PliR~-------------------------------------~~g~~~~iSWdeAl~~ia~~L~~-------~ 990 (1334)
+|+||++||+|. |+|+|++|||||||+.||++|++ +
T Consensus 105 sp~RL~~Pl~R~~~~~~~~~~~~~~~~p~~~w~~~~~~~~~~~~~~g~RG~g~f~~iSWDEAld~IA~~l~~i~~~~Gp~ 184 (1247)
T 1q16_A 105 SANRLKYPMMRKRLMKMWREAKALHSDPVEAWASIIEDADKAKSFKQARGRGGFVRSSWQEVNELIAASNVYTIKNYGPD 184 (1247)
T ss_dssp STTBCCSCEEEHHHHHHHHHHHTTCSSHHHHHHHHHTCHHHHHHHHTTTTSSCEEECCHHHHHHHHHHHHHHHHHHTCGG
T ss_pred CcccccCccccchhhhhhhhhhhccCChhhhhhhhccChhhhhhccccccCCceeEeCHHHHHHHHHHHHHHHHHHhCCc
Confidence 599999999993 36899999999999999999987 6
Q ss_pred CEEEEeCCcCCHHHHHHH-HHHHHHhCCCccccCCCCCcchhhhhhhhhccC---CCCcccccccCeEEEEcCCccccch
Q psy11935 991 EVAGVVGSLADAEAMVAL-KDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLL---NNKIAGAEEADLILLIGTNPRFEAP 1066 (1334)
Q Consensus 991 ~i~~~~g~~~~~e~~~~~-~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~die~ad~Il~~G~np~~~~p 1066 (1334)
+|++++|+..+.+..|++ .+|++.+|+.++++...+|..+. +....||. ..++.|+++||+||+||+||..++|
T Consensus 185 sI~~~~~~~~~~~~~y~~~~rf~~~lG~~~~~~~~~~c~~~~--~~~~~~G~~~~~~~~~D~~~ad~iv~wGsN~~~t~~ 262 (1247)
T 1q16_A 185 RVAGFSPIPAMSMVSYASGARYLSLIGGTCLSFYDWYCDLPP--ASPQTWGEQTDVPESADWYNSSYIIAWGSNVPQTRT 262 (1247)
T ss_dssp GEEEECCCGGGSHHHHHHHHHHHHHHTCEEECCTTTTTCSCT--HHHHHHSCSCCCCCGGGGGGCSEEEEESCCHHHHSG
T ss_pred eEEEEeCCccchHHHHHHHHHHHHHhCCCccCCCCchhhhhh--hHHHHhCCCCCCCCHHHHhhCCEEEEECCCchhccH
Confidence 898888777666666665 49999999999887777886543 23334442 3467899999999999999999999
Q ss_pred hHHHHHHHHHhhCCCeEEEEccCCCCcccccc------CCCcHHHHHHH
Q psy11935 1067 LFNARIRKGYLTNELDVAYIGPKVDLRYDYEH------LGESADLIKQL 1109 (1334)
Q Consensus 1067 ~~~~rir~a~~~~g~kiivIdp~~~~t~~~a~------~Gtd~a~l~~l 1109 (1334)
..+.++.++. ++|+|||||||+++.|+..++ ||||.||+.+|
T Consensus 263 ~~~~~l~~ar-~~G~KvVvIDPr~t~ta~~AD~wl~irPGTD~AL~~am 310 (1247)
T 1q16_A 263 PDAHFFTEVR-YKGTKTVAVTPDYAEIAKLCDLWLAPKQGTDAAMALAM 310 (1247)
T ss_dssp GGHHHHHHHG-GGTCEEEEECSSCCHHHHHSSEEECCCTTCHHHHHHHH
T ss_pred HHHHHHHHHH-HCCCEEEEEeCCCCcchhhCCeEEeeCCCcHHHHHHHH
Confidence 9999998885 579999999999999887765 89998876543
No 13
>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A* 1ti4_A* 1vld_M* 1vle_M* 1vlf_M*
Probab=100.00 E-value=9.8e-49 Score=514.13 Aligned_cols=376 Identities=13% Similarity=0.114 Sum_probs=277.6
Q ss_pred eeeeeecccCCCCCceEEEeeCCEEEEecC---CCC---------------CCCCccccccccccccccc-cccccCCce
Q psy11935 903 RKTESVDVLDAVGSNIIVSTRTGEVLRVLP---RLN---------------EDINEEWLADKGRFAYDGL-KRQRLLTPF 963 (1334)
Q Consensus 903 ~~~~s~c~~C~~gC~i~v~v~~g~v~ri~p---~~~---------------~~vn~g~lC~kgr~~~~~l-~~~Rl~~Pl 963 (1334)
+.+.++|++|+++| .|+|+||+|++|+| +++ +|+|+|++|+||++.++.+ +|+||++||
T Consensus 3 ~~~~~~~~~cg~~~--~v~v~dg~vv~v~g~~~~~~~~~~~~~~~~~g~~~~p~n~G~~C~kg~~~~~~~~~pdRl~~Pl 80 (875)
T 1ti6_A 3 EVVRLTNSSTGGPV--FVYVKDGKIIRMTPMDFDDAVDAPSWKIEARGKTFTPPRKTSIAPYTAGFKSMIYSDLRIPYPM 80 (875)
T ss_dssp CCEEEEECCTTCCE--EEEEETTEEEEEECCBCCTTTSCCCCCEEETTEEECCCSBCCCCHHHHTTHHHHTCTTBCCSCE
T ss_pred ceeeeeccCcCCCe--EEEEECCEEEEEeCCCCCcccccccccccccccccCccccCCcChhhhhHHHhhcCcccccCCe
Confidence 45778999998888 78999999999999 454 7789999999999999998 599999999
Q ss_pred Eec-------------CC--------CCeeecCHHHHHHHHHHHhcc-------CCEEEEeC----CcCCHHHHHHHHHH
Q psy11935 964 VRN-------------CD--------GQLVATEWEDALIAVAQKLQT-------SEVAGVVG----SLADAEAMVALKDL 1011 (1334)
Q Consensus 964 iR~-------------~~--------g~~~~iSWdeAl~~ia~~L~~-------~~i~~~~g----~~~~~e~~~~~~~l 1011 (1334)
+|. |+ |+|++|||||||++||++|++ ++|+++.+ .....+..+++++|
T Consensus 81 ~R~~~~~~~~~~~g~rG~~~~~~~~~g~~~~iSWdeAl~~iA~kl~~i~~~~G~~si~~~~~~~~~~g~~~~~~~~~~rf 160 (875)
T 1ti6_A 81 KRKSFDPNGERNPQLRGAGLSKQDPWSDYERISWDEATDIVVAEINRIKHAYGPSAILSTPSSHHMWGNVGYRHSTYFRF 160 (875)
T ss_dssp EETTCCTTSCCCGGGTTHHHHTTCGGGGEEECCHHHHHHHHHHHHHHHHHHTCGGGEEEECCSCCCSCTTTSTTTHHHHH
T ss_pred eecccccCCCcCcCCCCccccccccCCCEEEeeHHHHHHHHHHHHHHHHHHhCcceEEeecCCCcccCcccchhHHHHHH
Confidence 995 34 899999999999999999987 57876642 23334566788999
Q ss_pred HHHhCCCccccCC----CCCcchhhhhhhhh-ccC---CCCccc-ccccCeEEEEcCCccccchhHH-----HHHHHHHh
Q psy11935 1012 LNKLGSEDLYTEY----AFPLEGAGTDLRAN-YLL---NNKIAG-AEEADLILLIGTNPRFEAPLFN-----ARIRKGYL 1077 (1334)
Q Consensus 1012 ~~~lGs~~~~~~~----~~~~~~~~~~~~~~-~~~---~~~~~d-ie~ad~Il~~G~np~~~~p~~~-----~rir~a~~ 1077 (1334)
++.+|+.|+++.. .+|..+...++... +|. ..++.| +++||+||+||+|| +++|+.+ .+++..++
T Consensus 161 ~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ad~il~~G~Np-~~~p~~~~~~~~~~~~~~a~ 239 (875)
T 1ti6_A 161 MNMMGFTYADHNPDSWEGWHWGGMHMWGFSWRLGNPEQYDLLEDGLKHAEMIVFWSSDP-ETNSGIYAGFESNIRRQWLK 239 (875)
T ss_dssp HHHHCCEEEECCCTTTHHHHHTHHHHHCCGGGTTCCCCTTHHHHHHHHCSEEEEESCCH-HHHCSSSCTTTTHHHHHHHH
T ss_pred HHhcCCCccccCcCccCccchhhhcccccceeeecccccCCcHhHHhcCCEEEEECCCh-hhCCccCCCccchHHHHHHH
Confidence 9999987665442 34443322222223 332 225555 89999999999999 9998732 44554345
Q ss_pred hCCCeEEEEccCCCCcccc-cc------CCCcHHHHHHHHh------------------c--------------------
Q psy11935 1078 TNELDVAYIGPKVDLRYDY-EH------LGESADLIKQLAS------------------G-------------------- 1112 (1334)
Q Consensus 1078 ~~g~kiivIdp~~~~t~~~-a~------~Gtd~a~l~~l~~------------------g-------------------- 1112 (1334)
++|+|||||||+++.|+.. ++ ||||.+|+.+|+. |
T Consensus 240 ~~G~klivIDPr~t~ta~~~Ad~~l~irPGTD~aL~~am~~~ii~e~l~D~~fi~~~t~Gf~~~~~~v~~~~dG~~~tpe 319 (875)
T 1ti6_A 240 DLGVDFVFIDPHMNHTARLVADKWFSPKIGTDHALSFAIAYTWLKEDSYDKEYVAANAHGFEEWADYVLGKTDGTPKTCE 319 (875)
T ss_dssp HTTCEEEEECSBCCHHHHHHCSEEECCCTTCHHHHHHHHHHHHHHTTCSCHHHHHHHEESHHHHHHHHTTTTTSCCCCHH
T ss_pred HcCCeEEEECCCCCCcccccCCEEeccCCCcHHHHHHHHHHHHHHccchhHHHHHhhhccHHHHHHHhcccccCCcCCHH
Confidence 7899999999999998875 34 9999999876641 1
Q ss_pred ------------HHHHHHHHhcCCCcEE----EEcCC-c---ccHHHHHHHHHHHHHh--hcCCCCCCCCC-cccc----
Q psy11935 1113 ------------SHPFSKKLSAAKKPLI----VVGAD-I---SDGAAVLALVQQLAAK--VTCESDVPCDW-KVLN---- 1165 (1334)
Q Consensus 1113 ------------~~~~A~~l~~a~~~~i----i~G~~-~---~~g~~~~~al~~l~~~--~g~~Gg~~~~~-~~~~---- 1165 (1334)
|+++|+.|++++ ++| ++|+| + .+|....+++..|+.. +|.+||+.... .+..
T Consensus 320 ~aa~itGv~~~~I~~lA~~~a~~~-~~i~~g~~~g~gG~~~~~~g~~~~~ai~~L~~ltGig~~Ggg~~~~~~~~~~~~~ 398 (875)
T 1ti6_A 320 WAEEESGVPACEIRALARQWAKKN-TYLAAGGLGGWGGACRASHGIEWARGMIALATMQGMGKPGSNMWSTTQGVPLDYE 398 (875)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHSC-EEEEETTTTSCCGGGSBTTHHHHHHHHHHHHHHTTTTSTTCEECCSSSCCCCCTT
T ss_pred HHHHHHCcCHHHHHHHHHHHHhcC-CeeecccccccchhhhccccHHHHHHHHHHHHHhCCCCCCCccccCccccccccc
Confidence 366899999887 777 45667 5 6777766665555433 66666432100 0000
Q ss_pred -cc-hhh-hhhhhhhhcC----------------------CC-c------c---hh-----------------hHh----
Q psy11935 1166 -IL-QKA-ASQVAALDIG----------------------YK-P------G---TS-----------------AIR---- 1189 (1334)
Q Consensus 1166 -~l-~~~-~n~~G~~~~g----------------------~~-p------g---~~-----------------~i~---- 1189 (1334)
.+ ... ++.+|+.++| .. | . .+ .+.
T Consensus 399 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~ 478 (875)
T 1ti6_A 399 FYFPGYAEGGISGDCENSAAGFKFAWRMFDGKTTFPSPSNLNTSAGQHIPRLKIPECIMGGKFQWSGKGFAGGDISHQLH 478 (875)
T ss_dssp SCCCCGGGCTTSCCTTTSGGGTTHHHHHCCSSSCCCCCCSSSSTTSCEEEGGGHHHHHHHSCEEEECCSSCCSSTTGGGC
T ss_pred cccccccccCcCCcccccccccchhhhccccccCCCccccCCccccccccHHHHHHHHhCCCccccccccccccchhhhh
Confidence 00 011 1111211111 00 1 0 00 010
Q ss_pred --------cCCCcEEEEECCChhhh------HHhhcC--CCceEEEEcCCCChhhccccEEecCCCCCCCCc--------
Q psy11935 1190 --------EKPPKVLFLLGADEGSI------SRDDVG--KDCFIIYQGHHGDHGASIADAILPGAAYTEKQS-------- 1245 (1334)
Q Consensus 1190 --------~g~ik~l~~~g~np~~~------~~~al~--k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~G-------- 1245 (1334)
.+++|++|++|+||+.. ..++|+ +++|+|++|+|+|+|+.+||||||+++|+|++|
T Consensus 479 ~~~~~~~~~~~ik~l~~~g~Np~~s~p~~~~~~~aL~d~kldf~Vv~D~~~teTa~~ADvVLP~a~~~E~~~~~~~~~~~ 558 (875)
T 1ti6_A 479 QYEYPAPGYSKIKMFWKYGGPHLGTMTATNRYAKMYTHDSLEFVVSQSIWFEGEVPFADIILPACTNFERWDISEFANCS 558 (875)
T ss_dssp EEEESCTTCCCCCEEEEESCCHHHHSSSTHHHHHHTTCTTCCEEEEEESBSCTTGGGCSEEEEBCCGGGSCEEEETTCCB
T ss_pred hccccccCCCCeEEEEECCCChhhcCCCHHHHHHHHhhcCCCEEEEEccccCcchhhccEEecCCccccccCcccccccc
Confidence 35799999999999653 578999 999999999999999999999999999999996
Q ss_pred ccccC------CCceEEeccccCCCCCcccHHHHHHHHHHHhc
Q psy11935 1246 TYVNT------EGRAQQTLTAVTPPGLAREDWKIIRALSEGVS 1282 (1334)
Q Consensus 1246 t~~n~------egrvq~~~~av~P~gear~dw~Il~~La~~lg 1282 (1334)
+|.|. +|++|..+++|+|+|++|+||+|+++||++||
T Consensus 559 t~~~~~~~~~~~~~v~~~~~~v~P~gear~d~~I~~~La~rlg 601 (875)
T 1ti6_A 559 GYIPDNYQLCNHRVISLQAKCIEPVGESMSDYEIYRLFAKKLN 601 (875)
T ss_dssp TTBTTGGGGSSSCEEEEECCCSCCSTTCBCHHHHHHHHHHHTT
T ss_pred ccCCccccccccceEEEeecccCCCCCCCCHHHHHHHHHHHhC
Confidence 45666 78999999999999999999999999999998
No 14
>1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase, oxotransferase, molybdoenzyme, MO-cofactor, molybdenum; HET: 2MD; 2.50A {Shewanella massilia} SCOP: b.52.2.2 c.81.1.1
Probab=100.00 E-value=6.5e-47 Score=495.06 Aligned_cols=354 Identities=15% Similarity=0.122 Sum_probs=272.7
Q ss_pred CceEEEeeCCEEEEecCCCCCCCCccccccccccccccc-cccccCCceEecC--------------CCCeeecCHHHHH
Q psy11935 916 SNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGL-KRQRLLTPFVRNC--------------DGQLVATEWEDAL 980 (1334)
Q Consensus 916 C~i~v~v~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l-~~~Rl~~PliR~~--------------~g~~~~iSWdeAl 980 (1334)
|++.|+|+||+|++|+|+++++ ++|+||++.++.+ +|+||++||+|.+ +|+|++|||||||
T Consensus 48 c~i~v~v~dg~v~~v~g~~~~~----~~~~~g~~~~~~~~~pdRl~~Pl~R~g~~~~~~~~~~~~rG~g~~~~iSWdeAl 123 (829)
T 1tmo_A 48 GAFKMKRKNGVIAEVKPFDLDK----YPTDMINGIRGMVYNPSRVRYPMVRLDFLLKGHKSNTHQRGDFRFVRVTWDKAL 123 (829)
T ss_dssp EEEEEEEETTEEEEEEECTTCS----SCCGGGGTHHHHHSCTTBCCSCEEEHHHHHHGGGSCGGGTTSCEEEECCHHHHH
T ss_pred CceEEEEECCEEEEEecCCCCC----CcchHHhhhhhhhcChhhcCCcceecccccCCCCcccccCCCCCeEEecHHHHH
Confidence 8999999999999999998765 3799999999998 5999999999962 5899999999999
Q ss_pred HHHHHHhcc-------CCEEEE----eCCcCCHHHHHHHHHHHHHhCCCccccCCCCCcchhhhhhhhhc------cCCC
Q psy11935 981 IAVAQKLQT-------SEVAGV----VGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANY------LLNN 1043 (1334)
Q Consensus 981 ~~ia~~L~~-------~~i~~~----~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~------~~~~ 1043 (1334)
++||++|++ ++|++. .++....+..+++++|++.+|+ ++++...+|..+....+...+ +.+.
T Consensus 124 ~~ia~~l~~i~~~~G~~~i~~~~~g~~~~g~~~~~~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 202 (829)
T 1tmo_A 124 TLFKHSLDEVQTQYGPSGLHAGQTGWRATGQLHSSTSHMQRAVGMHGN-YVKKIGDYSTGAGQTILPYVLGSTEVYAQGT 202 (829)
T ss_dssp HHHHHHHHHHHHHTCGGGEECCCCCCCCSCTTTCHHHHHHHHHHTTCC-CBEEECCSSSTTHHHHHHHHTSSCCTTSCCC
T ss_pred HHHHHHHHHHHHhhCCceEEeccccCcccccccchhHHHHHHHHhcCC-cccCCCCcchhhhhhcccceEecccccCCCC
Confidence 999999987 456532 2233344567889999999997 466666677654322222222 2345
Q ss_pred Cccc-ccccCeEEEEcCCccccchh--------HHHHHHHHHh--hCCC-eEEEEccCCCCccccc-c------CCCcHH
Q psy11935 1044 KIAG-AEEADLILLIGTNPRFEAPL--------FNARIRKGYL--TNEL-DVAYIGPKVDLRYDYE-H------LGESAD 1104 (1334)
Q Consensus 1044 ~~~d-ie~ad~Il~~G~np~~~~p~--------~~~rir~a~~--~~g~-kiivIdp~~~~t~~~a-~------~Gtd~a 1104 (1334)
++.+ +++||+||+||+||..++|+ +..+++++.+ ++|+ |||||||+.+.|+..+ + ||||.+
T Consensus 203 ~~~~~~~~ad~il~~G~Np~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~klivIDPr~t~ta~~a~d~~l~irPGtD~a 282 (829)
T 1tmo_A 203 SWPLILEHSDTIVLWSNDPYKNLQVGWNAETHESFAYLAQLKEKVKQGKIRVISIDPVVTKTQAYLGCEQLYVNPQTDVT 282 (829)
T ss_dssp CHHHHHHHCSEEEEESCCHHHHTSCCSSBCCCTHHHHHHHHHHHHHHTSSEEEEECSSCCHHHHHHTCEEECCCTTCHHH
T ss_pred chHhhHhhCCEEEEECCChhhccccccccccchHHHHHHHHHHHhhCCCceEEEECCCCCCcchhhcCEEecccCCCHHH
Confidence 6766 79999999999999999986 5567777753 1688 9999999999998776 4 999999
Q ss_pred HHHHHH------------------hc--------------------------------HHHHHHHHhcCCCcEEEEcCCc
Q psy11935 1105 LIKQLA------------------SG--------------------------------SHPFSKKLSAAKKPLIVVGADI 1134 (1334)
Q Consensus 1105 ~l~~l~------------------~g--------------------------------~~~~A~~l~~a~~~~ii~G~~~ 1134 (1334)
++.+|+ .| |+++|+.|+++ +++|++|+++
T Consensus 283 l~~a~~~~ii~e~l~D~~fi~~~t~gf~~~~~~v~~~~dg~~~tpe~aa~itGv~~~~I~~~A~~~a~~-~~~i~~g~g~ 361 (829)
T 1tmo_A 283 LMLAIAHEMISKKLYDDKFIQGYSLGFEEFVPYVMGTKDGVAKTPEWAAPICGVEAHVIRDLAKTLVKG-RTQFMMGWCI 361 (829)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHEECHHHHHHHHHTTTTSCCCCHHHHHHHHTCCHHHHHHHHHHHHHS-CEEEEECSGG
T ss_pred HHHHHHHHHHHCCcccHHHHHHhcccHHHHHHHhcCCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHhcC-CCEEEeccch
Confidence 987664 12 46789999975 6888899987
Q ss_pred ---ccHHHHHHHHHH---HHHhhcCCCCCCCCCcccccchhhhhhhhhhhc-----------------------CC----
Q psy11935 1135 ---SDGAAVLALVQQ---LAAKVTCESDVPCDWKVLNILQKAASQVAALDI-----------------------GY---- 1181 (1334)
Q Consensus 1135 ---~~g~~~~~al~~---l~~~~g~~Gg~~~~~~~~~~l~~~~n~~G~~~~-----------------------g~---- 1181 (1334)
.+|....+++.+ |+|++|++||+. ++.... |.+|...+ .+
T Consensus 362 ~~~~~g~~~~~ai~~L~~ltGnig~~Ggg~------~~~~~~-n~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 434 (829)
T 1tmo_A 362 QRQQHGEQPYWMAAVLATMIGQIGLPGGGI------SYGHHY-SSIGVPSSGAAAPGAFPRNLDENQKPLFDSSDFKGAS 434 (829)
T ss_dssp GSSTTTHHHHHHHHHHHHHHTCTTSTTCEE------ESCTTS-TTTTSCCCCCCCCCCCCSSCCTTCCCSSCCCCCTTSC
T ss_pred hhhhhhHHHHHHHHHHHHHhCCCCCCCCCc------cccccc-ccCCCccccccCCccCCccccccccccCChhHhhccc
Confidence 567666665554 456666666421 111110 11111110 00
Q ss_pred --Ccc---hhhHhc--------------CCCcEEEEECCChhhh------HHhhcCCCceEEEEcCCCChhhccccEEec
Q psy11935 1182 --KPG---TSAIRE--------------KPPKVLFLLGADEGSI------SRDDVGKDCFIIYQGHHGDHGASIADAILP 1236 (1334)
Q Consensus 1182 --~pg---~~~i~~--------------g~ik~l~~~g~np~~~------~~~al~k~~fvV~~d~~~~eta~~ADvVLP 1236 (1334)
.|. .+++.. +++|++|++|+||+.. ..++|++++|+|++|+|+|+|+.+||||||
T Consensus 435 ~~~~~~~~~~~i~~~g~~~~~~g~~~~~~~ik~l~~~g~Np~~~~p~~~~~~~aL~~ldf~Vv~d~~~teTa~~ADvvLP 514 (829)
T 1tmo_A 435 STIPVARWIDAILEPGKTIDANGSKVVYPDIKMMIFSGNNPWNHHQDRNRMKQAFHKLECVVTVDVNWTATCRFSDIVLP 514 (829)
T ss_dssp SEEEGGGHHHHHHSTTCEEECSSSEEECCCCCEEEEESCCHHHHSSCHHHHHHHHTTCSEEEEEESBCCHHHHTCSEEEE
T ss_pred ccccHhHHHHHHhCCCCccccCCcccCCCCeEEEEEeCCCccccCcCHHHHHHHHhCCCeEEEecCcCCchhhhccEecc
Confidence 111 123322 4799999999999653 478999999999999999999999999999
Q ss_pred CCCCCCCCccc---ccCCCceEEeccccCCCCCcccHHHHHHHHHHHhc
Q psy11935 1237 GAAYTEKQSTY---VNTEGRAQQTLTAVTPPGLAREDWKIIRALSEGVS 1282 (1334)
Q Consensus 1237 ~a~~~Ek~Gt~---~n~egrvq~~~~av~P~gear~dw~Il~~La~~lg 1282 (1334)
+++|+|++|++ +|.+++++.++|+|+|+|++|+||+|+++||++||
T Consensus 515 ~a~~~E~~g~~~~~~~~~~~v~~~~~~v~P~gear~d~~I~~~La~~lg 563 (829)
T 1tmo_A 515 ACTTYERNDIDVYGAYANRGILAMQKMVEPLFDSLSDFEIFTRFAAVLG 563 (829)
T ss_dssp BCCGGGSCEEEEECTTTCCEEEEECCCSCCCTTCBCHHHHHHHHHHHTT
T ss_pred CCchhccCCccccccCCCceEEEEecccCCcccCcCHHHHHHHHHHHhC
Confidence 99999999998 89999999999999999999999999999999998
No 15
>1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor, DMSO, molybdopte oxidoreductase; HET: GLC MGD EPE; 1.30A {Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1 PDB: 4dmr_A* 1dmr_A* 1e5v_A* 1h5n_A* 2dmr_A* 3dmr_A* 1e61_A* 1e60_A* 1e18_A* 1dms_A*
Probab=100.00 E-value=7.4e-47 Score=491.42 Aligned_cols=358 Identities=17% Similarity=0.171 Sum_probs=274.9
Q ss_pred cCCCCCc-eEEEeeCCEEEEecCCCCCCCCccccccccccccccc-cccccCCceEec--------------CCCCeeec
Q psy11935 911 LDAVGSN-IIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGL-KRQRLLTPFVRN--------------CDGQLVAT 974 (1334)
Q Consensus 911 ~C~~gC~-i~v~v~~g~v~ri~p~~~~~vn~g~lC~kgr~~~~~l-~~~Rl~~PliR~--------------~~g~~~~i 974 (1334)
+|+.+|+ +.|+|+||+|++|+|+++++. .|.+|++.++.+ +|+||++||+|. |+|+|++|
T Consensus 9 ~~~~~cg~l~v~v~dg~vv~v~g~~~~~~----~~~~~~~~~~~~~~pdRl~~Pl~R~~~~~~~~~~~~g~rG~g~~~~i 84 (780)
T 1eu1_A 9 MSGCHWGVFKARVENGRAVAFEPWDKDPA----PSHQLPGVLDSIYSPTRIKYPMVRREFLEKGVNADRSTRGNGDFVRV 84 (780)
T ss_dssp EEEETTEEEEEEEETTEEEEEEECTTCSS----CCTTHHHHHHTTTSTTBCCSCEEEHHHHHHGGGSCGGGTTSSCEEEC
T ss_pred eeccccCcEEEEEECCEEEEEecCCCCCC----cChhhhhhhhhhcChhhhcCCeeeccccccCCCCcccCCCCCCeEEe
Confidence 5667777 999999999999999987765 489999999998 599999999995 36899999
Q ss_pred CHHHHHHHHHHHhcc-------CCEEEE----eCCcCCHHHHHHHHHHHHHhCCCccccCCCCCcchhhhhhhhhc----
Q psy11935 975 EWEDALIAVAQKLQT-------SEVAGV----VGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANY---- 1039 (1334)
Q Consensus 975 SWdeAl~~ia~~L~~-------~~i~~~----~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~---- 1039 (1334)
||||||++||++|++ ++|+++ +++....+..+++++|++.+|+ ++++...+|..+...++...+
T Consensus 85 SWdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~g~~~~~~~~~~~f~~~~G~-~~~~~~~~~~~~~~~~~~~~~G~~~ 163 (780)
T 1eu1_A 85 TWDEALDLVARELKRVQESYGPTGTFGGSYGWKSPGRLHNCQVLMRRALNLAGG-FVNSSGDYSTAAAQIIMPHVMGTLE 163 (780)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCGGGEECCCCCCCCCCSSCCHHHHHHHHHHHHTC-CBEEESCSSSTTHHHHHHHHTSSCC
T ss_pred cHHHHHHHHHHHHHHHHHHhCCceEEecccCCcccccccchhHHHHHHHHhcCC-CcCCCCCcccchhhhccCceecccc
Confidence 999999999999987 566432 2233334567788999999997 466666677654322222222
Q ss_pred --cCCCCcc-cccccCeEEEEcCCccccchh--------HHHHHHHHHhhCCCeEEEEccCCCCccccc-c------CCC
Q psy11935 1040 --LLNNKIA-GAEEADLILLIGTNPRFEAPL--------FNARIRKGYLTNELDVAYIGPKVDLRYDYE-H------LGE 1101 (1334)
Q Consensus 1040 --~~~~~~~-die~ad~Il~~G~np~~~~p~--------~~~rir~a~~~~g~kiivIdp~~~~t~~~a-~------~Gt 1101 (1334)
+.+.++. |+++||+||+||+||.+++|+ ...+++++. ++|+|||||||+.+.|+..+ + |||
T Consensus 164 ~~~~~~~~~~d~~~ad~il~~G~N~~~~~~~~~~~~~~~~~~~l~~a~-~~G~klivIDPr~t~ta~~aad~~l~irPGt 242 (780)
T 1eu1_A 164 VYEQQTAWPVVVENTDLMVFWAADPMKTNEIGWVIPDHGAYAGMKALK-EKGTRVIAINPVRTETADYFGADVVSPRPQT 242 (780)
T ss_dssp TTSCCSCHHHHHHHCSEEEEESCCHHHHTTCCSSBCCCHHHHHHHHHH-HHTCEEEEESSBCCHHHHHHTCEEECCCTTC
T ss_pred ccCCCCCcHhHHhhCCEEEEECCCHHHhcCCCCcccccchHHHHHHHH-HCCCeEEEECCCCCCcccccCCEEeeeCCCC
Confidence 2334555 789999999999999999886 446788875 57899999999999997764 3 999
Q ss_pred cHHHHHHHH----------------------------h----------------------cHHHHHHHHhcCCCcEEEEc
Q psy11935 1102 SADLIKQLA----------------------------S----------------------GSHPFSKKLSAAKKPLIVVG 1131 (1334)
Q Consensus 1102 d~a~l~~l~----------------------------~----------------------g~~~~A~~l~~a~~~~ii~G 1131 (1334)
|.+|+.+|+ . .|+++|+.|++++ ++|++|
T Consensus 243 D~AL~~am~~~ii~e~l~D~~fi~~~t~Gfe~~~~~v~~~~dg~~~tpe~aa~itGv~~~~I~~~A~~~a~~~-~~i~~g 321 (780)
T 1eu1_A 243 DVALMLGMAHTLYSEDLHDKDFLENCTTGFDLFAAYLTGESDGTPKTAEWAAEICGLPAEQIRELARSFVAGR-TMLAAG 321 (780)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHEECHHHHHHHHTTTTTSCCCCHHHHHHHHCSCHHHHHHHHHHHHSSC-EEEEEC
T ss_pred HHHHHHHHHHHHHHCCCccHHHHHHhhhcHHHHHHHhcCCcCCCcCCHHHHHHHHCcCHHHHHHHHHHHHhcC-CEEEee
Confidence 999987753 0 1467899999887 888999
Q ss_pred CCc---ccHHHHHHHHHH---HHHhhcCCCCCCCCCcccccchhhhhhhhhhhc-----------CC-------------
Q psy11935 1132 ADI---SDGAAVLALVQQ---LAAKVTCESDVPCDWKVLNILQKAASQVAALDI-----------GY------------- 1181 (1334)
Q Consensus 1132 ~~~---~~g~~~~~al~~---l~~~~g~~Gg~~~~~~~~~~l~~~~n~~G~~~~-----------g~------------- 1181 (1334)
+++ .+|....+++.+ |+|++|++||+. ++... .|.+|...+ |.
T Consensus 322 ~g~~~~~~g~~~~~ai~~L~~ltGnig~~Ggg~------~~~~~-~n~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 394 (780)
T 1eu1_A 322 WSIQRMHHGEQAHWMLVTLASMIGQIGLPGGGF------GLSYH-YSNGGSPTSDGPALGGISDGGKAVEGAAWLSESGA 394 (780)
T ss_dssp SGGGSSTTTHHHHHHHHHHHHHHTCTTSTTCEE------ESCTT-STTTTSCCCSCCCCCCCCCCC---CC-------CC
T ss_pred chHhHHhhhHHHHHHHHHHHHHhCCCCCCCCcc------ccccc-cccCCCcccccCCCCCCCCCCCCCchhhhhhhccc
Confidence 987 567666665554 556666666431 11111 111111100 00
Q ss_pred --Ccc---hhhHhc-C-------------CCcEEEEECCChhhh------HHhhcCCCceEEEEcCCCChhhccccEEec
Q psy11935 1182 --KPG---TSAIRE-K-------------PPKVLFLLGADEGSI------SRDDVGKDCFIIYQGHHGDHGASIADAILP 1236 (1334)
Q Consensus 1182 --~pg---~~~i~~-g-------------~ik~l~~~g~np~~~------~~~al~k~~fvV~~d~~~~eta~~ADvVLP 1236 (1334)
.|. .+++.. | ++|++|++|+||+.. ..++|++++|+|++|+|+|+|+.+||||||
T Consensus 395 ~~~p~~~~~~~~~~~g~~~~~~g~~~~~~~ik~l~~~g~Np~~~~pd~~~~~~al~~ldf~Vv~d~~~teTa~~ADvVLP 474 (780)
T 1eu1_A 395 TSIPCARVVDMLLNPGGEFQFNGATATYPDVKLAYWAGGNPFAHHQDRNRMLKAWEKLETFIVQDFQWTATARHADIVLP 474 (780)
T ss_dssp SEEEGGGHHHHHHCTTCEEEETTEEEECCCCCEEEEESCCHHHHSSCHHHHHHHGGGCSEEEEEESBCCHHHHTCSEEEE
T ss_pred cccCHHHHHHHHhcCCCccccCCcccCCCCeeEEEEeCCChhhcCccHHHHHHHHhcCCeEEEeccccCcchhhccEecc
Confidence 111 123322 3 799999999999652 478999999999999999999999999999
Q ss_pred CCCCCCCCccc---ccCCCceEEeccccCCCCCcccHHHHHHHHHHHhc
Q psy11935 1237 GAAYTEKQSTY---VNTEGRAQQTLTAVTPPGLAREDWKIIRALSEGVS 1282 (1334)
Q Consensus 1237 ~a~~~Ek~Gt~---~n~egrvq~~~~av~P~gear~dw~Il~~La~~lg 1282 (1334)
+++|+|++|++ +|.+++++.++|+|+|+|++|+||+|++.||++||
T Consensus 475 ~a~~~E~~g~~~~~~~~~~~v~~~~~~v~P~gear~d~~I~~~La~rlg 523 (780)
T 1eu1_A 475 ATTSYERNDIESVGDYSNRAILAMKKVVDPLYEARSDYDIFAALAERLG 523 (780)
T ss_dssp BCCGGGSCEEEEECTTTCCEEEEECCCSCCCTTCBCHHHHHHHHHHHTT
T ss_pred CCcccccCCccccccCCCceEEEeecccCCcccCCCHHHHHHHHHHHhC
Confidence 99999999997 88999999999999999999999999999999999
No 16
>3l51_B Structural maintenance of chromosomes protein 4; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus} SCOP: d.215.1.0
Probab=99.95 E-value=4.6e-29 Score=259.35 Aligned_cols=148 Identities=9% Similarity=0.074 Sum_probs=128.1
Q ss_pred HHHHhccCCCCCCccccccccccccccccccc-----cccccccccCCCcChHHHHHHhhhcCCCccceechhhhh-ccC
Q psy11935 244 SKESLATRQPSEQSLIDSTTDTNCPVTQQYVP-----SSNQQYAPSSNQQYSIPTSNINQQYSMFSADSTHMNIVE-RDI 317 (1334)
Q Consensus 244 Vk~vL~~~~~~~~~gI~G~Vaeli~Vp~~Y~~-----G~alQnIVv~~e~~Ak~aI~~LK~~~~GRaTFLPl~~Ik-r~l 317 (1334)
++.+|+.+....++||+|+|+|||+||++|++ .|++|+|||+++.+|+.+|+|||+++.||+||+|||.|+ +..
T Consensus 4 ~~~l~~~~~~~~~~Gv~G~v~dLi~v~~~y~~Aie~alg~l~~iVVd~~~~A~~~i~~Lk~~~~GRatflpL~~i~~~~~ 83 (166)
T 3l51_B 4 LDAIIQEKKSGRIPGIYGRLGDLGAIDEKYDIAISSCCHALDYIVVDSIDTAQECVNFLKKHNIGIATFIGLDKMTVWAK 83 (166)
T ss_dssp HHHHHHHHHHTSSTTEEEEGGGSCBCCGGGHHHHHHHCGGGGSEEESCHHHHHHHHHHHHHTTCCCCCEEEGGGTGGGTT
T ss_pred HHHHHHHHHhCCCCCceEEHHHheeeCHHHHHHHHHHHhhCceEEECCHHHHHHHHHHHHHcCCCeEEEEECcccccccc
Confidence 45566554433489999999999999999998 339999999999999999999999999999999999999 643
Q ss_pred ccchhccCCeEeeecccccc-chhhhHHHHhhhhch--hhhHHHHHHHHhhCCCCCceEecccccccCCCCcccccc
Q psy11935 318 PNSADDMRKYIEMQYSMFSA-DSTHMNIVERDIPNS--ADDMRKYIEMLLEKPPGNPVSDLEAEVKDSAGPMTSFLE 391 (1334)
Q Consensus 318 ~~~~~~~~G~iG~A~dLV~~-d~~~~~Ii~~LLG~t--~e~ld~A~~iak~~~~r~RIVTLdGdvin~GGSiTGGs~ 391 (1334)
+......|+.+..|.|||+| |++|.+++.++||+| ++||+.|..+++..++++|+||||||+|+++|+|||||-
T Consensus 84 ~~~~~~~~~~~~~a~dlv~~~d~~~~~a~~~llg~tlVv~dl~~A~~~~~~~~~~~r~VTldGdli~~~G~~tGG~~ 160 (166)
T 3l51_B 84 KMSKIQTPENTPRLFDLVKVKNEEIRQAFYFALRDTLVANNLDQATRVAYQRDRRWRVVTLQGQIIEQSGTMSGGLE 160 (166)
T ss_dssp SCCCCCCGGGCCBHHHHCBCSCHHHHHHHHHHHTTCEEESSHHHHHHHHBCSSCBCCEEETTSCEECTTCCEEECCG
T ss_pred cccccccccchhhHhheeeCCcHHHHHHHHHHcCCEEEECCHHHHHHHHHhhCCCcEEEECCCEEEeCCEEEECCCc
Confidence 21112334556678999999 579999999999999 999999999999988999999999999999999999994
No 17
>1gxl_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 3.0A {Thermotoga maritima} SCOP: d.215.1.1
Probab=99.93 E-value=1.3e-26 Score=253.46 Aligned_cols=173 Identities=10% Similarity=0.102 Sum_probs=149.9
Q ss_pred HHHHHhccCCCCCCccccccccccccccccccc------cccccccccCCCcChHHHHHHhhhcCCCccceechhhhh-c
Q psy11935 243 TSKESLATRQPSEQSLIDSTTDTNCPVTQQYVP------SSNQQYAPSSNQQYSIPTSNINQQYSMFSADSTHMNIVE-R 315 (1334)
Q Consensus 243 ~Vk~vL~~~~~~~~~gI~G~Vaeli~Vp~~Y~~------G~alQnIVv~~e~~Ak~aI~~LK~~~~GRaTFLPl~~Ik-r 315 (1334)
.++.+|+.... +.|++|+|+|+|+||++|++ |+.+|+|||+++.+|+.+|+|||.++.||+||+|++.++ +
T Consensus 30 ~~~~ll~~~~~--~~g~~g~l~~li~v~~~~e~Ave~aLg~~l~~ivv~~~~~a~~~i~~lk~~~~gr~~~lpl~~~~~~ 107 (213)
T 1gxl_A 30 AVRAVFEEKER--FPGLVDVVSNLIEVDEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGS 107 (213)
T ss_dssp HHHHHHTTTTS--CTTEEEEGGGTCBCCHHHHHHHHHHHGGGGGCEEESSHHHHHHHHHHHHHHTCEEEEEEETTTSCCC
T ss_pred HHHHHHHhhhh--hCCCceehhheeeeCHHHHHHHHHHHHHhhcEEEECCHHHHHHHHHHHHhcCCCceEEEEchhcCCC
Confidence 38888876433 78999999999999999999 999999999999999999999999999999999999988 5
Q ss_pred cCc-cchhccCCeEeeeccccccchhhhHHHHhhhhch--hhhHHHHHHHHhhCCCCCceEecccccccCCCCccccccc
Q psy11935 316 DIP-NSADDMRKYIEMQYSMFSADSTHMNIVERDIPNS--ADDMRKYIEMLLEKPPGNPVSDLEAEVKDSAGPMTSFLES 392 (1334)
Q Consensus 316 ~l~-~~~~~~~G~iG~A~dLV~~d~~~~~Ii~~LLG~t--~e~ld~A~~iak~~~~r~RIVTLdGdvin~GGSiTGGs~~ 392 (1334)
... ..+...+|+++.+.++|+||+.|.+++.++||+| ++|++.|..+++..++++|+||+||++++|+|+||||+.
T Consensus 108 ~~~~~~~~~~~g~~~~~~d~v~~~~~~~~~~~~~lg~~~vv~~l~~A~~~~~~~~~~~~~VT~~G~~~~~~G~~~gg~~- 186 (213)
T 1gxl_A 108 FNRISGLENERGFVGYAVDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKKKYRLNTRIATLDGELISGRGAITGGRE- 186 (213)
T ss_dssp CCCCTTGGGSTTEEEEGGGGCBCCSTTHHHHHHHSSSEEEESSHHHHHHHHHHTCSSCEEECTTSCEECTTSCEEECCC-
T ss_pred CccchhhhcCCCcHHHHHHHhcCCHHHHHHHHHHhCCEEEECCHHHHHHHHHhcCCCceEEecCCeEEcCCceEECCCC-
Confidence 310 1123357999999999999999999999999999 999999999999999999999999999999999999984
Q ss_pred CCCCCcccchhhHHHHHHHhhHHhHHHH
Q psy11935 393 SVTSDIFNEPALYTKTVRSVTLKISKEK 420 (1334)
Q Consensus 393 ~~~~~ll~Rk~ei~~L~~~~~~~~~~~~ 420 (1334)
+...++|+|++++++|+.++ +.++++
T Consensus 187 ~~~~~~l~~~~el~~l~~~l--~~~~~~ 212 (213)
T 1gxl_A 187 ERSSNVFERRIKLKHLEQEM--EETERQ 212 (213)
T ss_dssp SSCCCTTHHHHHHHHHHHHH--C-----
T ss_pred ccccchhhHHHHHHHHHHHH--HHHHhc
Confidence 44567999999999999888 665543
No 18
>3nwc_A SMC protein; structural maintenance of chromosomes (SMC), SMC hinge domai dimerization, DNA binding, cell cycle; 1.70A {Pyrococcus furiosus}
Probab=99.93 E-value=1.1e-26 Score=244.83 Aligned_cols=138 Identities=11% Similarity=0.076 Sum_probs=125.1
Q ss_pred hHHHHHhccCCCCCCcccccccccccccccc-ccc------cccccccccCCCcChHHHHHHhhhcCCCccceechhhhh
Q psy11935 242 HTSKESLATRQPSEQSLIDSTTDTNCPVTQQ-YVP------SSNQQYAPSSNQQYSIPTSNINQQYSMFSADSTHMNIVE 314 (1334)
Q Consensus 242 ~~Vk~vL~~~~~~~~~gI~G~Vaeli~Vp~~-Y~~------G~alQnIVv~~e~~Ak~aI~~LK~~~~GRaTFLPl~~Ik 314 (1334)
+.|+.+|+.. ++||+|+|+|||+||++ |++ |+.+++|||+++.+|+.+|+|||+++.||+||+|||.|+
T Consensus 23 ~~v~~l~~~~----~~gv~G~l~dLi~V~~~kye~Ave~aLG~~l~~iVVd~~~~A~~~i~~Lk~~~~GRatflpl~~i~ 98 (189)
T 3nwc_A 23 RAAEELKRSG----IGGIYGTLAELIKVKDEAYALAIEVALGNRADNVVVEDELVAEKAIKYLKEHKLGRLTFLPLNKIK 98 (189)
T ss_dssp THHHHHTTSC----CCSEEEEHHHHCEESCGGGHHHHHHHHGGGGGCEEESSHHHHHHHHHHHHHTTCCCCCEEETTTCC
T ss_pred HHHHHHHhcC----CCCceEEHHHheeeChhhHHHHHHHHhccccccEEECCHHHHHHHHHHHHhcCCCceEEEECCccc
Confidence 3499999642 78999999999999999 999 999999999999999999999999999999999999998
Q ss_pred -ccCccchhccCCeEeeeccccccchhhhHHHHhhhhch--hhhHHHHHHHHhhCCCCCceEecccccccCCCCcccccc
Q psy11935 315 -RDIPNSADDMRKYIEMQYSMFSADSTHMNIVERDIPNS--ADDMRKYIEMLLEKPPGNPVSDLEAEVKDSAGPMTSFLE 391 (1334)
Q Consensus 315 -r~l~~~~~~~~G~iG~A~dLV~~d~~~~~Ii~~LLG~t--~e~ld~A~~iak~~~~r~RIVTLdGdvin~GGSiTGGs~ 391 (1334)
+.+ ...+|++ |.|||+||++|.+++.++||+| |+||+.|..+. + ++|+||||||+++|+|+||||+.
T Consensus 99 ~~~~----~~~~g~~--a~dlv~~d~~~~~a~~~llg~tlvv~dl~~A~~l~---~-~~r~VTldGd~i~~~G~~tGG~~ 168 (189)
T 3nwc_A 99 PKHV----DSSVGLP--AVDVIEYDQKIENAVKFALGDTVIVNSMEEARPHI---G-KVRMVTIEGELYERSGAITGGHF 168 (189)
T ss_dssp CCCC----CSCSSEE--GGGGEECCGGGHHHHHHHHTTEEEESCSGGGGGGT---T-TSEEEETTSCEECTTSCEECSCS
T ss_pred cccC----CCCCCcE--EeeeeccCHHHHHHHHHHhCCEEEECCHHHHHHHh---C-CCeEEeCCCcEEECCEEEEeCCC
Confidence 543 3457888 8999999999999999999999 99999998882 3 89999999999999999999985
Q ss_pred cC
Q psy11935 392 SS 393 (1334)
Q Consensus 392 ~~ 393 (1334)
++
T Consensus 169 ~~ 170 (189)
T 3nwc_A 169 RA 170 (189)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 19
>3l51_A Structural maintenance of chromosomes protein 2; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus}
Probab=99.92 E-value=2.1e-26 Score=238.43 Aligned_cols=133 Identities=10% Similarity=0.021 Sum_probs=115.4
Q ss_pred CCcccccccccccccc-ccccc------cccccccccCCCcChHHHHHHhhhcCCCccceechhhhh-ccCc-cc---h-
Q psy11935 255 EQSLIDSTTDTNCPVT-QQYVP------SSNQQYAPSSNQQYSIPTSNINQQYSMFSADSTHMNIVE-RDIP-NS---A- 321 (1334)
Q Consensus 255 ~~~gI~G~Vaeli~Vp-~~Y~~------G~alQnIVv~~e~~Ak~aI~~LK~~~~GRaTFLPl~~Ik-r~l~-~~---~- 321 (1334)
-.+||+|+|+|||+|| ++|++ |+.+|||||+++.+|+.+|+|+ +..||+||||||.|+ +.++ .. .
T Consensus 13 ~~~gv~G~v~dLi~v~d~~y~~Ave~alG~~l~~iVVd~~~~A~~~i~~~--~~~GR~tflpL~~i~~~~~~~~~~~~~~ 90 (161)
T 3l51_A 13 NRNSVKGLVASLINVKDNSTATALEVVAGERLYNVVVDTEVTAKKLLEKG--ELKRRYTIIPLNKISARCIAPETLRVAQ 90 (161)
T ss_dssp CGGGEEEEGGGSCEESCGGGHHHHHHHHGGGGGCEEESCHHHHHHHHHHS--CCSSCEEEEETTTCCCCCCCHHHHHHHH
T ss_pred CcCccEEEHHHheeeCchhHHHHHHHHhccccceEEECCHHHHHHHHHHH--hhCCcEEEEECccccccCcCHHHHhhhh
Confidence 3679999999999996 89998 9999999999999999999997 568999999999999 7653 11 1
Q ss_pred -hccCCeEeeeccccccchhhhHHHHhhhhch--hhhHHHHHHHHhhCCCCCceEecccccccCCCCcccc
Q psy11935 322 -DDMRKYIEMQYSMFSADSTHMNIVERDIPNS--ADDMRKYIEMLLEKPPGNPVSDLEAEVKDSAGPMTSF 389 (1334)
Q Consensus 322 -~~~~G~iG~A~dLV~~d~~~~~Ii~~LLG~t--~e~ld~A~~iak~~~~r~RIVTLdGdvin~GGSiTGG 389 (1334)
...++.++.|.|||+||++|.+++.++||+| ++||+.|..+++..++++|+||||||+|+++|+||||
T Consensus 91 ~~~~~~~~~~a~dlv~~d~~~~~a~~~llg~tlv~~dl~~A~~~~~~~~~~~r~VTldGd~i~~~G~~tGG 161 (161)
T 3l51_A 91 NLVGPDNVHVALSLVDYKPELQKGMEFVFGTTFVCNNMDNAKKVAFDKRIMTRTVTLGGDVFDPHGTLSGG 161 (161)
T ss_dssp HHHCTTSEEEGGGGEECCGGGHHHHHHHHTTCEEESSHHHHHHHHHCTTTCCCEEETTSCEECCC------
T ss_pred hcCCCcchhHHHHHhcCCHHHHHHHHHHcCCEEEECCHHHHHHHHHhcCCCCeEEeCCCeEEcCCEEEecC
Confidence 1247889999999999999999999999999 9999999999999888999999999999999999998
No 20
>1gxj_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 2.0A {Thermotoga maritima} SCOP: d.215.1.1 PDB: 1gxk_A
Probab=99.92 E-value=7.4e-26 Score=241.76 Aligned_cols=158 Identities=11% Similarity=0.110 Sum_probs=132.6
Q ss_pred hHHHHHhccCCCCCCccccccccccccccccccc------cccccccccCCCcChHHHHHHhhhcCCCccceechhhhh-
Q psy11935 242 HTSKESLATRQPSEQSLIDSTTDTNCPVTQQYVP------SSNQQYAPSSNQQYSIPTSNINQQYSMFSADSTHMNIVE- 314 (1334)
Q Consensus 242 ~~Vk~vL~~~~~~~~~gI~G~Vaeli~Vp~~Y~~------G~alQnIVv~~e~~Ak~aI~~LK~~~~GRaTFLPl~~Ik- 314 (1334)
+.++.+|+.... +.|++|.|+|+|+||++|++ |+.+|+|||+++.+|+.+|+|||+++.||+||+|++.|+
T Consensus 17 ~~~~~~l~~~~~--~~g~~g~l~~li~v~~~~e~Ave~aLG~~l~~ivv~~~~~a~~~i~~lk~~~~gr~tflpl~~~~~ 94 (186)
T 1gxj_A 17 RAVRAVFEEKER--FPGLVDVVSNLIEVDEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDG 94 (186)
T ss_dssp HHHHHHHHTGGG--CTTEEEEHHHHCBCCGGGHHHHHHHHGGGGGCEEESSHHHHHHHHHHHHHHTCCCEEEEETTTCCC
T ss_pred HHHHHHHHhhhh--hCCcceehhheeccCHHHHHHHHHHHHHhhhEEEECCHHHHHHHHHHHHhcCCCceEEEEccccCC
Confidence 337888865432 67999999999999999999 999999999999999999999999999999999999998
Q ss_pred ccCc-cchhccCCeEeeeccccccchhhhHHHHhhhhch--hhhHHHHHHHHhhCCCCCceEecccccccCCCCcccccc
Q psy11935 315 RDIP-NSADDMRKYIEMQYSMFSADSTHMNIVERDIPNS--ADDMRKYIEMLLEKPPGNPVSDLEAEVKDSAGPMTSFLE 391 (1334)
Q Consensus 315 r~l~-~~~~~~~G~iG~A~dLV~~d~~~~~Ii~~LLG~t--~e~ld~A~~iak~~~~r~RIVTLdGdvin~GGSiTGGs~ 391 (1334)
+... ..+...+|+++.|.++|+||++|.+++.++||+| ++||+.|..+++..++++|+||+||++++|+|+||||+.
T Consensus 95 ~~~~~~~~~~~~g~~~~~~dlv~~~~~~~~~~~~~lg~~~v~~~l~~A~~l~~~~~~~~~~VTldG~~~~~~G~~~gG~~ 174 (186)
T 1gxj_A 95 SFNRISGLENERGFVGYAVDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKKKYRLNTRIATLDGELISGRGAITGGRE 174 (186)
T ss_dssp CCCCCTTGGGSTTEEEEHHHHCBCCGGGHHHHHHHHTTCEEESCHHHHHHHHHHHTCCSCEEETTSCEECTTSCEEEEEC
T ss_pred CcccchhcccCCCchHHHHHHccCCHHHHHHHHHHcCCEEEECCHHHHHHHHHhcCCCceEEeCCCeEEcCCEEEECCCC
Confidence 5310 1123347999999999999999999999999999 999999999999999999999999999999999999984
Q ss_pred cCCCCCcccch
Q psy11935 392 SSVTSDIFNEP 402 (1334)
Q Consensus 392 ~~~~~~ll~Rk 402 (1334)
.+.+++|+|+
T Consensus 175 -~~~~~~l~r~ 184 (186)
T 1gxj_A 175 -ERSSNVFERR 184 (186)
T ss_dssp -----------
T ss_pred -CCCCCcceec
Confidence 4456688764
No 21
>2wd5_B Structural maintenance of chromosomes protein 3; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}
Probab=99.89 E-value=2.5e-24 Score=234.96 Aligned_cols=156 Identities=10% Similarity=0.022 Sum_probs=129.8
Q ss_pred Cccccccccccccccccccc------cccccccccCCCcChHHHHHHhhhcC-CCccceechhhhh-ccCccchhccCCe
Q psy11935 256 QSLIDSTTDTNCPVTQQYVP------SSNQQYAPSSNQQYSIPTSNINQQYS-MFSADSTHMNIVE-RDIPNSADDMRKY 327 (1334)
Q Consensus 256 ~~gI~G~Vaeli~Vp~~Y~~------G~alQnIVv~~e~~Ak~aI~~LK~~~-~GRaTFLPl~~Ik-r~l~~~~~~~~G~ 327 (1334)
++|++|+|+|+|+||++|++ |+.+++|||+++.+|+.+|+|||+.+ .||+||+|++.++ +.++ ....+|+
T Consensus 46 ~~g~~g~l~dli~v~~~~e~Ave~aLG~~l~~iVV~~~~~a~~~i~~l~~~~~~gr~tflpl~~~~~~~~~--~~~~~~~ 123 (213)
T 2wd5_B 46 QNGYHGIVMNNFECEPAFYTCVEVTAGNRLFYHIVDSDEVSTKILMEFNKMNLPGEVTFLPLNKLDVRDTA--YPETNDA 123 (213)
T ss_dssp HTTEEEEGGGSEECCGGGHHHHHHHHTTGGGCEEESCHHHHHHHHHHHHHTTCCCCEEEEETTTCCCCCCC--CCCCSSE
T ss_pred CCCceeeHHHhcccCHHHHHHHHHHHhHHhhEEEECCHHHHHHHHHHHHhCCCCcceEEEECcccCcccCC--CCCCCCc
Confidence 67999999999999999999 99999999999999999999999998 9999999999988 5421 1123688
Q ss_pred EeeeccccccchhhhHHHHhhhhch--hhhHHHHHHHHhhCCCCCceEecccccccCCCCcccccccCCCCCcccchhhH
Q psy11935 328 IEMQYSMFSADSTHMNIVERDIPNS--ADDMRKYIEMLLEKPPGNPVSDLEAEVKDSAGPMTSFLESSVTSDIFNEPALY 405 (1334)
Q Consensus 328 iG~A~dLV~~d~~~~~Ii~~LLG~t--~e~ld~A~~iak~~~~r~RIVTLdGdvin~GGSiTGGs~~~~~~~ll~Rk~ei 405 (1334)
+++ .++|+||+.|.+++.++||+| ++|++.|..+++.+ ++++||+||++++|+|+||||+... ..++|.+++++
T Consensus 124 ~~l-~~~v~~~~~~~~~~~~~l~~~~vv~~l~~A~~l~~~~--~~~~VTldG~~~~~~G~~tgG~~~~-~~~~l~~~~~l 199 (213)
T 2wd5_B 124 IPM-ISKLRYNPRFDKAFKHVFGKTLICRSMEVSTQLARAF--TMDCITLEGDQVSHRGALTGGYYDT-RKSRLELQKDV 199 (213)
T ss_dssp EEG-GGGCEECGGGHHHHHHHHTTEEEESSHHHHHHHHHHS--SCEEECTTCCEECTTSCEEECCCCC-C---HHHHHHH
T ss_pred eeH-HHHccCcHHHHHHHHHHcCCEEEECCHHHHHHHHHhc--CceEEeCCCcEECCCeEEECCCCCC-CccHhHHHHHH
Confidence 884 588999999999999999999 99999999999874 6899999999999999999998433 35689999999
Q ss_pred HHHHHHhhHHhHHH
Q psy11935 406 TKTVRSVTLKISKE 419 (1334)
Q Consensus 406 ~~L~~~~~~~~~~~ 419 (1334)
++|+.++ +.+++
T Consensus 200 ~~l~~~l--~~~~~ 211 (213)
T 2wd5_B 200 RKAEEEL--GELEA 211 (213)
T ss_dssp HHHC----------
T ss_pred HHHHHHH--HHHHh
Confidence 9988887 55543
No 22
>2wd5_A Structural maintenance of chromosomes protein 1A; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}
Probab=99.89 E-value=1.4e-24 Score=239.55 Aligned_cols=134 Identities=6% Similarity=0.042 Sum_probs=120.5
Q ss_pred Ccc-ccccccccccc-cccccc------cccccccccCCCcChHHHHHHhhhcCCCccceechhhhh-ccCccchhccCC
Q psy11935 256 QSL-IDSTTDTNCPV-TQQYVP------SSNQQYAPSSNQQYSIPTSNINQQYSMFSADSTHMNIVE-RDIPNSADDMRK 326 (1334)
Q Consensus 256 ~~g-I~G~Vaeli~V-p~~Y~~------G~alQnIVv~~e~~Ak~aI~~LK~~~~GRaTFLPl~~Ik-r~l~~~~~~~~G 326 (1334)
++| |+|+|++||+| |++|++ |+.+++|||+++.+|+.+|+|||+.+.||+||+|++.++ +..+..+...+|
T Consensus 51 ~~g~v~G~l~dli~v~~~~ye~Ave~aLG~~l~~iVV~~~~~a~~~i~~Lk~~~~Gr~tflpl~~i~~~~~~~~~~~~~g 130 (233)
T 2wd5_A 51 YPGSVYGRLIDLCQPTQKKYQIAVTKVLGKNMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLEVKPTDEKLRELKG 130 (233)
T ss_dssp SGGGEEEEHHHHEEESSGGGHHHHHHHHGGGGSCEEESCHHHHHHHHHHHHHTTCCCEEEEETTTCCCCCCCGGGGGCSS
T ss_pred CCCCeeeeHHHhceeCcHHHHHHHHHHHHHhhcEEEECCHHHHHHHHHHHHhcCCCCeEEEECcccccCCcchhccCCCC
Confidence 679 99999999998 699999 999999999999999999999999999999999999997 543211222356
Q ss_pred eEeeecccccc-chhhhHHHHhhhhch--hhhHHHHHHHHhhCCCCCceEecccccccCCCCccccc
Q psy11935 327 YIEMQYSMFSA-DSTHMNIVERDIPNS--ADDMRKYIEMLLEKPPGNPVSDLEAEVKDSAGPMTSFL 390 (1334)
Q Consensus 327 ~iG~A~dLV~~-d~~~~~Ii~~LLG~t--~e~ld~A~~iak~~~~r~RIVTLdGdvin~GGSiTGGs 390 (1334)
+ +.+.++|+| |+.|.+++.++||+| |+|++.|..++...++++|+||+||+++++||+||||+
T Consensus 131 ~-~~l~dlV~~~~~~~~~~~~~~Lg~~~vv~dl~~A~~l~~~~~~~~r~VTldG~~~~~~G~~tGG~ 196 (233)
T 2wd5_A 131 A-KLVIDVIRYEPPHIKKALQYACGNALVCDNVEDARRIAFGGHQRHKTVALDGTLFQKSGVISGGA 196 (233)
T ss_dssp C-EESGGGEEESSGGGHHHHHHHTTTCEEESSHHHHHHHHHSSSSCCCEEETTCCEECTTSCEEECH
T ss_pred c-hHHHHhhhCCcHHHHHHHHHHhCCEEEECCHHHHHHHHHhcCCCceEEecCCEEEeCCeeEeCCC
Confidence 5 578899999 699999999999999 99999999999998889999999999999999999997
No 23
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=99.89 E-value=1.6e-23 Score=259.96 Aligned_cols=170 Identities=21% Similarity=0.292 Sum_probs=141.3
Q ss_pred cEEEEECCEEEEeCCCCcchh------------------------------------hhhhhcCCCCCCCEEEcCCHHHH
Q psy11935 664 KFEVFIDDKKVMVDPGTTVLQ------------------------------------PVAACAMPVMKGWRVKTNSEMTR 707 (1334)
Q Consensus 664 ~~~~~idg~~~~v~~g~til~------------------------------------~~~ac~~~~~~gm~v~t~s~~~~ 707 (1334)
||+|+|||++|+|++|+|||+ ++.||.|++.+||+|.|+++.+.
T Consensus 1 mv~~~ing~~v~v~~g~tiL~a~~~~gi~ip~lC~~~~~~~~~G~Cg~C~V~v~g~~~~~aC~t~v~~gm~V~T~~~~~~ 80 (574)
T 3c8y_A 1 MKTIIINGVQFNTDEDTTILKFARDNNIDISALCFLNNCNNDINKCEICTVEVEGTGLVTACDTLIEDGMIINTNSDAVN 80 (574)
T ss_dssp CEEEEETTEEEEECCCCBHHHHHHHTTCCCCCSSCBTTBCCSSSCCCTTEEEETTTEEEEGGGCBCCTTCEEESSCHHHH
T ss_pred CeEEEECCEEEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCcccCCCCEEEeCCCcccccCCCCcccceeEEecchhhh
Confidence 699999999999999999999 36799999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCCCCCchhhhHHHhCCCC-CcccccccCCCCCccchhhhhhccCCCCcccccceeecC
Q psy11935 708 RAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDR-SRFTDIDFSGKSGTYTRVTRQRSWGLIPSRVFLQSINRH 786 (1334)
Q Consensus 708 ~~r~~~~~~ll~~hp~~C~~c~~~g~c~lq~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ip~lc~~~~v~~~ 786 (1334)
++|+.++++||.|||++|+.|++++.|+||+++..||+.. .+|.. +.... .+.
T Consensus 81 ~~r~~~lelll~~h~~~C~~C~~~~~C~Lq~~a~~~Gv~~~~~f~~----~~~~~--------------------~~~-- 134 (574)
T 3c8y_A 81 EKIKSRISQLLDIHEFKCGPCNRRENCEFLKLVIKYKARASKPFLP----KDKTE--------------------YVD-- 134 (574)
T ss_dssp HHHHHHHHHHHTTSCCCCTTCTTTTSCHHHHHHHHHTCCCSSCCCC----SCGGG--------------------GEE--
T ss_pred hhHHHHHHHHHhccCCCCCcCCCCcchHHHHHHHHhccCCCcCCCC----Ccccc--------------------ccc--
Confidence 9999999999999999999999999999999999999987 77732 22100 111
Q ss_pred CCcccccccccCCCCcEEEcCCHHHHHHHHHHHHHHhhCCCCCCcccccCCccchhhhhcccCccccccCCCCCceeccc
Q psy11935 787 WIGPVAACAMPVMKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGNDLGTTGRGSDMQVGTY 866 (1334)
Q Consensus 787 ~~~~~~aC~~~v~~gm~i~t~s~~~r~~r~~~~~~ll~~h~~~C~~C~~~g~c~~~~~e~~g~~~~~~~~rg~~~~i~~~ 866 (1334)
..+|. |.. +..+| +.|++| +++|-+++|+.++.+.++|....+.+.
T Consensus 135 ~~~~~------------i~~--d~~kC--------------i~Cg~C------v~~CP~~~~~~ai~~~~~g~~~~i~~~ 180 (574)
T 3c8y_A 135 ERSKS------------LTV--DRTKC--------------LLCGRC------VNACGKNTETYAMKFLNKNGKTIIGAE 180 (574)
T ss_dssp CCSSS------------EEE--EGGGC--------------CCCCHH------HHHHHHHHSCCCSEEEEETTEEEEESG
T ss_pred cCCCc------------cee--CcccC--------------cCCCCc------cchhCchhcCCceeeccCCccceeccc
Confidence 11233 555 66788 888887 999998889999999998887777654
Q ss_pred ccc---ccccccccccccccccccccccCC
Q psy11935 867 VEK---LFLSELSGNVIDLCPVGALTSKPY 893 (1334)
Q Consensus 867 ~~~---~~~~~~cg~cv~~CpvGAl~~k~~ 893 (1334)
... ...|+.||.|+++||+|||+.+..
T Consensus 181 ~~~~i~~~~Ci~Cg~Cv~~CP~gAi~~~~~ 210 (574)
T 3c8y_A 181 DEKCFDDTNCLLCGQCIIACPVAALSEKSH 210 (574)
T ss_dssp GGCCGGGSSCCCCCHHHHHCSSTTEEECCC
T ss_pred ccceechhhCCcchhHHHhhccCCcccccc
Confidence 332 335999999999999999987753
No 24
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=99.65 E-value=9.9e-17 Score=206.72 Aligned_cols=126 Identities=27% Similarity=0.358 Sum_probs=94.2
Q ss_pred hhhhhccCC-CCcccccc-----------eeecC----------------------CCcccccccccCCCCcEEEcCCHH
Q psy11935 765 VTRQRSWGL-IPSRVFLQ-----------SINRH----------------------WIGPVAACAMPVMKGWRVKTNSEM 810 (1334)
Q Consensus 765 ~~~~~~~~~-ip~lc~~~-----------~v~~~----------------------~~~~~~aC~~~v~~gm~i~t~s~~ 810 (1334)
+++++..|| ||++|||+ .|+.. ..++++||+|+|++||+|.|+|+.
T Consensus 20 l~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~~~~~~~~g~~~~~~~G~~~~~~~~~~~~aC~t~v~~gm~v~t~~~~ 99 (783)
T 3i9v_3 20 MDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPKKGPDGKPLLNEKGEPEIQWQPKLAASCVTAVADGMVVDTLSDV 99 (783)
T ss_dssp HHHHHHTTCCCCCSSCCTTSCCCCCSCCSEEEEECC-----------------CCBCSSCEETTTCBCCSSEEEESSSHH
T ss_pred HHHHHHhCCCccccCCCCCCCCCcccCCcEEEecccccccccccccccccccccccCCCcccccCCCCCCCCEEEECCHH
Confidence 689999999 99999988 56652 136889999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCCcccccCCccchhhhhc-ccCccccc---------cCCCC------Cc--eecccc-cccc
Q psy11935 811 TRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSM-AFGNDLGT---------TGRGS------DM--QVGTYV-EKLF 871 (1334)
Q Consensus 811 ~r~~r~~~~~~ll~~h~~~C~~C~~~g~c~~~~~e~-~g~~~~~~---------~~rg~------~~--~i~~~~-~~~~ 871 (1334)
++..|+.+|||||++||.+|+.|+++|+|.++..-+ .|.....+ ..|.. .. ..++.. -.+-
T Consensus 100 ~~~~r~~~le~ll~nhp~dC~~C~~~g~C~Lq~~~~~~g~~~~~~~~~~~~~p~~~r~~~~k~~~~~~~~~~p~i~~d~~ 179 (783)
T 3i9v_3 100 VREAQAGMVEFTLLNHPLDCPTCDKGGACELQDRTVEYGLYEKYYQKGPLELPVYTRFEFTRRHVDKHHPLSPFVILDRE 179 (783)
T ss_dssp HHHHHHHHHHHHHTSCCCCTTTCTTGGGCHHHHHHHHHCSCCCC------CCCCCCCCCSCCCCCCCSEEEETTEEECTT
T ss_pred HHHHHHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHHhCCccccccccccccccccccccccccCCcccCCCccEEEchh
Confidence 999999999999999999999999999999865321 34422111 11111 00 111111 1233
Q ss_pred cccccccccccc----ccccccc
Q psy11935 872 LSELSGNVIDLC----PVGALTS 890 (1334)
Q Consensus 872 ~~~~cg~cv~~C----pvGAl~~ 890 (1334)
.|+.||+|+++| |++||..
T Consensus 180 ~CI~C~~Cv~~C~~~~~~~~i~~ 202 (783)
T 3i9v_3 180 RCIHCKRCVRYFEEVPGDEVLDF 202 (783)
T ss_dssp TCCCCCHHHHHHHHTTCCCCCEE
T ss_pred hCCCccHHHHHhhhhcCCceeee
Confidence 599999999999 8888843
No 25
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=99.40 E-value=1.2e-13 Score=171.51 Aligned_cols=126 Identities=18% Similarity=0.264 Sum_probs=96.3
Q ss_pred hhhhhccCC-CCcccccc------------eeecCCCcccccccccCCCCcEEEcCCHHHHHHHHHHHHHHhhCCCCCCc
Q psy11935 765 VTRQRSWGL-IPSRVFLQ------------SINRHWIGPVAACAMPVMKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCP 831 (1334)
Q Consensus 765 ~~~~~~~~~-ip~lc~~~------------~v~~~~~~~~~aC~~~v~~gm~i~t~s~~~r~~r~~~~~~ll~~h~~~C~ 831 (1334)
++++++.|+ ||++||++ .|+.++..+++||.|+|.+||+|.|+++.++..|+.++++++++||.+|.
T Consensus 20 L~a~~~~gi~ip~lC~~~~~~~~~G~Cg~C~V~v~g~~~~~aC~t~v~~gm~V~T~~~~~~~~r~~~lelll~~h~~~C~ 99 (574)
T 3c8y_A 20 LKFARDNNIDISALCFLNNCNNDINKCEICTVEVEGTGLVTACDTLIEDGMIINTNSDAVNEKIKSRISQLLDIHEFKCG 99 (574)
T ss_dssp HHHHHHTTCCCCCSSCBTTBCCSSSCCCTTEEEETTTEEEEGGGCBCCTTCEEESSCHHHHHHHHHHHHHHHTTSCCCCT
T ss_pred HHHHHHcCCCCCcccCCCCCCCCcccCCCCEEEeCCCcccccCCCCcccceeEEecchhhhhhHHHHHHHHHhccCCCCC
Confidence 589999999 99999943 56655433789999999999999999999999999999999999999999
Q ss_pred ccccCCccchhhh-hcccCcc-ccc-cCCCCCceeccccc----ccccccccccccccccc----cccccc
Q psy11935 832 ICDQGGECDLQDQ-SMAFGND-LGT-TGRGSDMQVGTYVE----KLFLSELSGNVIDLCPV----GALTSK 891 (1334)
Q Consensus 832 ~C~~~g~c~~~~~-e~~g~~~-~~~-~~rg~~~~i~~~~~----~~~~~~~cg~cv~~Cpv----GAl~~k 891 (1334)
.|.+++.|.++.- ...|+.. ..| .+..... ++.... ..-.|+.||+|+++||+ +||...
T Consensus 100 ~C~~~~~C~Lq~~a~~~Gv~~~~~f~~~~~~~~-~~~~~~~i~~d~~kCi~Cg~Cv~~CP~~~~~~ai~~~ 169 (574)
T 3c8y_A 100 PCNRRENCEFLKLVIKYKARASKPFLPKDKTEY-VDERSKSLTVDRTKCLLCGRCVNACGKNTETYAMKFL 169 (574)
T ss_dssp TCTTTTSCHHHHHHHHHTCCCSSCCCCSCGGGG-EECCSSSEEEEGGGCCCCCHHHHHHHHHHSCCCSEEE
T ss_pred cCCCCcchHHHHHHHHhccCCCcCCCCCccccc-cccCCCcceeCcccCcCCCCccchhCchhcCCceeec
Confidence 9999999998652 2346655 444 2211111 222111 12359999999999997 999643
No 26
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.01 E-value=9.4e-07 Score=99.24 Aligned_cols=183 Identities=16% Similarity=0.171 Sum_probs=82.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q psy11935 54 REFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQLDSAELTLHREF---QQKEKTIVENA 130 (1334)
Q Consensus 54 ~er~~~~~~~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~---~~~~~~i~~~~ 130 (1334)
.+++..+...+..+..++..+..++..+...+..+ ...+.. +...+..+...+..+...+.... ......+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 166 (284)
T 1c1g_A 89 NRRIQLFEEELDRAQERLATALQKLEEAEKAADES-ERGMKV-IESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVA 166 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333 333333 33333333333333333333332 23334444444
Q ss_pred HHHHHHHHHhHhhhhhHHHHHHHHHHhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 131 AKQLKQISENEFKQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESK 210 (1334)
Q Consensus 131 ~~~ie~~~~~~~l~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~ 210 (1334)
..+.........+.+.+..+...+. .+..+...+...+..+...+..+...+..+...+..+...+..+...+..+..
T Consensus 167 ~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 244 (284)
T 1c1g_A 167 RKLVIIESDLERAEERAELSEGKCA--ELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAER 244 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555555 44444444444444445555555455445555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy11935 211 KRELMAKKVESVMQSQLQQAIHMITSDVTHL 241 (1334)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~srl 241 (1334)
.+..+...+..+ ...+......+..+..++
T Consensus 245 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 274 (284)
T 1c1g_A 245 SVTKLEKSIDDL-EDELYAQKLKYKAISEEL 274 (284)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 555555555555 444444444444444333
No 27
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=98.94 E-value=2.4e-11 Score=134.83 Aligned_cols=61 Identities=16% Similarity=0.106 Sum_probs=52.8
Q ss_pred ECCEEEEeCCCCcchh----------------------------------hhhhhcCCCCCC---CEEEcCCHHHHHHHH
Q psy11935 669 IDDKKVMVDPGTTVLQ----------------------------------PVAACAMPVMKG---WRVKTNSEMTRRARE 711 (1334)
Q Consensus 669 idg~~~~v~~g~til~----------------------------------~~~ac~~~~~~g---m~v~t~s~~~~~~r~ 711 (1334)
+++.+|+|++|+|||+ ++.||.|++.+| |.|
T Consensus 23 ~~~~~~~~~~~~tll~al~~~~~~~~p~l~~~~~c~~G~Cg~C~v~v~G~~~~aC~~~~~~~~~~~~i------------ 90 (243)
T 1kf6_B 23 SAFYEVPYDATTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRDYTDGMKV------------ 90 (243)
T ss_dssp EEEEEEEECTTCBHHHHHHHHHHHTCTTCCCCCCCSSSSSCCCEEEETTEEEEGGGCBGGGCTTCEEE------------
T ss_pred eEEEEEecCCCChHHHHHHHcCcccCCCcccccCCCCCcCCCCEeEECCEEEeeeeeEHhhCCCcEEE------------
Confidence 5677888888888888 678999999998 777
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCchhhhHHHhCCCCCcc
Q psy11935 712 GVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRF 750 (1334)
Q Consensus 712 ~~~~~ll~~hp~~C~~c~~~g~c~lq~~~~~~g~~~~~~ 750 (1334)
||++|+.|++++.|+||+++..||.....|
T Consensus 91 ---------~~l~~~~~~kdl~~dl~~~~~~~~~~~~~~ 120 (243)
T 1kf6_B 91 ---------EALANFPIERDLVVDMTHFIESLEAIKPYI 120 (243)
T ss_dssp ---------ECCTTSCEEETTEECCHHHHHHHHHTCCSC
T ss_pred ---------EecCCCCccceeEEecHHHHHHHHhcCCee
Confidence 999999999999999999999998655444
No 28
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.84 E-value=7.3e-06 Score=91.85 Aligned_cols=40 Identities=15% Similarity=0.263 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11935 194 RDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQAIHMI 234 (1334)
Q Consensus 194 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (1334)
+...+..+...+..+...+..+...+..+ ...+..+...+
T Consensus 221 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 260 (284)
T 1c1g_A 221 YEEEIKVLSDKLKEAETRAEFAERSVTKL-EKSIDDLEDEL 260 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 33333444444444444444444444444 33333333333
No 29
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=98.79 E-value=1.8e-10 Score=127.33 Aligned_cols=50 Identities=16% Similarity=0.132 Sum_probs=38.2
Q ss_pred hhhhhcCCCCC-CCEEEcCCHHHHHHHHHHHHHHHHhCCC-CCCCCCCCCCC-chhhhHHHhCC
Q psy11935 685 PVAACAMPVMK-GWRVKTNSEMTRRAREGVMEFLLVNHPL-DCPICDQGGEC-DLQDQSMAFGS 745 (1334)
Q Consensus 685 ~~~ac~~~~~~-gm~v~t~s~~~~~~r~~~~~~ll~~hp~-~C~~c~~~g~c-~lq~~~~~~g~ 745 (1334)
++.||.|++.+ ||. ++ +.++|.|+ |||. +|++||.++.| .||++...++.
T Consensus 71 ~~laC~~~~~~~g~~---~~-------~~~ie~l~-~~pvi~dlv~d~~~~~~~l~~~~~~~~~ 123 (238)
T 2wdq_B 71 NGLACITPISALNQP---GK-------KIVIRPLP-GLPVIRDLVVDMGQFYAQYEKIKPYLLN 123 (238)
T ss_dssp EEEGGGCBGGGTCCT---TS-------CEEEECCT-TSBEEETTEECCHHHHHHHHHTCCSCCC
T ss_pred EEcccccchhhhccC---CC-------CEEEeeCC-CCcchhhceechHHHHHHHHhhcCcccc
Confidence 34599999998 885 22 24577766 9999 99999999996 89987644544
No 30
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.50 E-value=1.9e-07 Score=125.69 Aligned_cols=80 Identities=9% Similarity=0.033 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh---HHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy11935 6 EIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE---LREFYQTQLNNNQKAQDEIQTLLAKSASIK 82 (1334)
Q Consensus 6 ~~~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~---~~er~~~~~~~~~~l~~~i~~l~~~~~~~~ 82 (1334)
+++.++..++.++..++..+.+++.+++.++.++..+..++...... ..+++..+..++++++.++.+++.+++..+
T Consensus 861 ~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee~e 940 (1184)
T 1i84_S 861 AKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEE 940 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444433333222 333334444444444444444444444433
Q ss_pred HHH
Q psy11935 83 TEL 85 (1334)
Q Consensus 83 ~~l 85 (1334)
+++
T Consensus 941 e~l 943 (1184)
T 1i84_S 941 ERS 943 (1184)
T ss_dssp HC-
T ss_pred HHH
Confidence 333
No 31
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.49 E-value=1.8e-07 Score=125.98 Aligned_cols=100 Identities=11% Similarity=0.096 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh---HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 10 LLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE---LREFYQTQLNNNQKAQDEIQTLLAKSASIKTELR 86 (1334)
Q Consensus 10 ~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~---~~er~~~~~~~~~~l~~~i~~l~~~~~~~~~~l~ 86 (1334)
++..++.++..++.++..++..+..++.++..+.++++.++.+ ..+.+.....+...+..++..++.+++.++.++.
T Consensus 858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~ele 937 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIE 937 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555555555555544 3344444444555555555555555555555554
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Q psy11935 87 EFYQTQLNNNVKEKLKEFQTQLDSA 111 (1334)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~~ 111 (1334)
.. +..+.+ +..++.+++.++..+
T Consensus 938 e~-ee~l~e-l~~e~~~le~el~~L 960 (1184)
T 1i84_S 938 EE-EERSQQ-LQAEKKKMQQQMLDL 960 (1184)
T ss_dssp HH-HHC-------------------
T ss_pred HH-HHHHHH-HHHHHHHHHHHHHHH
Confidence 44 444443 333333333333333
No 32
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=98.13 E-value=5.4e-07 Score=119.99 Aligned_cols=31 Identities=19% Similarity=0.221 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCC--CCCch
Q psy11935 706 TRRAREGVMEFLLVNHPLDCPICDQG--GECDL 736 (1334)
Q Consensus 706 ~~~~r~~~~~~ll~~hp~~C~~c~~~--g~c~l 736 (1334)
+.++|+.|+++|+.+||.+||+|+.. |.|++
T Consensus 634 ~~~f~k~v~~~ll~~~g~~~pv~~~~~dG~~p~ 666 (1231)
T 2c42_A 634 TNEFFKNVVKPILTQQGDKLPVSAFEADGRFPL 666 (1231)
T ss_dssp CCHHHHHTHHHHHTTCGGGSCGGGSCTTCCBCT
T ss_pred HHHHHHHHHHHHHhCCCCCCCccccCCCCcccC
Confidence 45789999999999999999999986 77764
No 33
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=98.07 E-value=5.3e-07 Score=99.74 Aligned_cols=103 Identities=13% Similarity=0.005 Sum_probs=69.6
Q ss_pred hhhhhccCC--CCcccccc----------eeecCCCcccccccccCCCC---cEEEcCCHHHHHHHHHHHHHHhhCCCCC
Q psy11935 765 VTRQRSWGL--IPSRVFLQ----------SINRHWIGPVAACAMPVMKG---WRVKTNSEMTRRAREGVMEFLLVNHPLD 829 (1334)
Q Consensus 765 ~~~~~~~~~--ip~lc~~~----------~v~~~~~~~~~aC~~~v~~g---m~i~t~s~~~r~~r~~~~~~ll~~h~~~ 829 (1334)
+++++..|+ ||++||+. .|+.++ .+++||.|+|.+| |.| ||+.
T Consensus 37 l~al~~~~~~~~p~l~~~~~c~~G~Cg~C~v~v~G-~~~~aC~~~~~~~~~~~~i---------------------~~l~ 94 (243)
T 1kf6_B 37 LDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNN-VPKLACKTFLRDYTDGMKV---------------------EALA 94 (243)
T ss_dssp HHHHHHHHHHTCTTCCCCCCCSSSSSCCCEEEETT-EEEEGGGCBGGGCTTCEEE---------------------ECCT
T ss_pred HHHHHHcCcccCCCcccccCCCCCcCCCCEeEECC-EEEeeeeeEHhhCCCcEEE---------------------EecC
Confidence 588888886 89999987 666643 6899999999999 877 5699
Q ss_pred CcccccCCccchh--hhhcccCccccccCCCC----C-ceecc----ccccccccccccccccccccccccc
Q psy11935 830 CPICDQGGECDLQ--DQSMAFGNDLGTTGRGS----D-MQVGT----YVEKLFLSELSGNVIDLCPVGALTS 890 (1334)
Q Consensus 830 C~~C~~~g~c~~~--~~e~~g~~~~~~~~rg~----~-~~i~~----~~~~~~~~~~cg~cv~~CpvGAl~~ 890 (1334)
|..|++++.|.+. ...+ +.....+..... . ..+.+ .......|+.||.|+.+||++++..
T Consensus 95 ~~~~~kdl~~dl~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~~~~~ 165 (243)
T 1kf6_B 95 NFPIERDLVVDMTHFIESL-EAIKPYIIGNSRTADQGTNIQTPAQMAKYHQFSGCINCGLCYAACPQFGLNP 165 (243)
T ss_dssp TSCEEETTEECCHHHHHHH-HHTCCSCCSCCCCGGGCCCCCCHHHHHTTGGGGCCCCCCHHHHHCHHHHHCT
T ss_pred CCCccceeEEecHHHHHHH-HhcCCeeccCcCCCccccccCCHHHHHHhhhhhhccccCccccccCCCcccC
Confidence 9999999999864 3332 222211111110 0 11111 1122346999999999999999853
No 34
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=97.78 E-value=1.5e-06 Score=95.74 Aligned_cols=111 Identities=16% Similarity=0.119 Sum_probs=69.6
Q ss_pred hhhhhccCC-CCcccc----------cceeecCCCcccccccccCCC-CcEEEcCCHHHHHHHHHHHHHHhhCCCC-CCc
Q psy11935 765 VTRQRSWGL-IPSRVF----------LQSINRHWIGPVAACAMPVMK-GWRVKTNSEMTRRAREGVMEFLLVNHPL-DCP 831 (1334)
Q Consensus 765 ~~~~~~~~~-ip~lc~----------~~~v~~~~~~~~~aC~~~v~~-gm~i~t~s~~~r~~r~~~~~~ll~~h~~-~C~ 831 (1334)
+++++..++ +|+|+| .+.|+.++ .++.||.|+|.+ ||. ++ +..+|.|+ +||+ .|.
T Consensus 36 l~~l~~~~~~~~~l~~~~~C~~g~Cg~C~v~v~G-~~~laC~~~~~~~g~~---~~-------~~~ie~l~-~~pvi~dl 103 (238)
T 2wdq_B 36 LDALIQLKEKDPSLSFRRSCREGVCGSDGLNMNG-KNGLACITPISALNQP---GK-------KIVIRPLP-GLPVIRDL 103 (238)
T ss_dssp HHHHHHHHHHCTTCCCCCSSSSSSSCTTEEEETT-EEEEGGGCBGGGTCCT---TS-------CEEEECCT-TSBEEETT
T ss_pred HHHHHHhcccCCCccccccCCCCCCCCCEEEECC-EEEcccccchhhhccC---CC-------CEEEeeCC-CCcchhhc
Confidence 567777666 677666 44777754 577799999999 996 22 24566666 8998 999
Q ss_pred ccccCCccchhhhhcccCccccccCCC---CCceecc----ccccccccccccccccccccccccc
Q psy11935 832 ICDQGGECDLQDQSMAFGNDLGTTGRG---SDMQVGT----YVEKLFLSELSGNVIDLCPVGALTS 890 (1334)
Q Consensus 832 ~C~~~g~c~~~~~e~~g~~~~~~~~rg---~~~~i~~----~~~~~~~~~~cg~cv~~CpvGAl~~ 890 (1334)
.|+.++.|..+- .+.+ .++...+. .+..+.+ .......|+.||.|+.+||++++..
T Consensus 104 v~d~~~~~~~l~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~~~~~ 166 (238)
T 2wdq_B 104 VVDMGQFYAQYE-KIKP--YLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNP 166 (238)
T ss_dssp EECCHHHHHHHH-HTCC--SCCCCCSSCCSSSCCCCHHHHHTTTTTTTCCCCCTTGGGCHHHHHCT
T ss_pred eechHHHHHHHH-hhcC--ccccCcCCCCcccccCCHHHHHHHhccccccccCCchhhCcCCccCC
Confidence 999998863221 2221 11111111 1111211 1123446999999999999998754
No 35
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=97.75 E-value=8.3e-06 Score=84.07 Aligned_cols=75 Identities=17% Similarity=0.396 Sum_probs=60.6
Q ss_pred cEEEEECCEEEEe--CCCCcchh------------------------------hhhhhcCCCCC--CCEEEcCCHHHHHH
Q psy11935 664 KFEVFIDDKKVMV--DPGTTVLQ------------------------------PVAACAMPVMK--GWRVKTNSEMTRRA 709 (1334)
Q Consensus 664 ~~~~~idg~~~~v--~~g~til~------------------------------~~~ac~~~~~~--gm~v~t~s~~~~~~ 709 (1334)
+|+|+|||++++| ++|+|||+ ++.||.+|+.+ ||.|.|-.+.....
T Consensus 11 ~i~~~ing~~~~~~v~~~~tlL~~Lr~~~gl~g~~~~C~~G~CGaC~V~vdG~~v~sC~~~~~~~~G~~v~Tiegl~~~~ 90 (168)
T 1t3q_A 11 RISATINGKPRVFYVEPRMHLADALREVVGLTGTKIGCEQGVCGSCTILIDGAPMRSCLTLAVQAEGCSIETVEGLSQGE 90 (168)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHTTCCTTSCCSCSSSSSCTTEEEETTEEEEGGGSBGGGGTTCEEECGGGTCCSS
T ss_pred eEEEEECCEEEEEecCCCCcHHHHHHhcCCCCccccCCCCCCCCCcEEEECCCEeechhhHHHHhCCCeEEEEcCCCCcc
Confidence 4899999999985 89999999 78999999987 99999977765443
Q ss_pred H-HHHHHHHHHhCCCCCCCCCCCCCCchhhhHHHhC
Q psy11935 710 R-EGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFG 744 (1334)
Q Consensus 710 r-~~~~~~ll~~hp~~C~~c~~~g~c~lq~~~~~~g 744 (1334)
+ ..+.+.++.+|+..| |.|....+...|+
T Consensus 91 ~~~~~q~a~~~~~~~qC------G~C~pg~i~~a~~ 120 (168)
T 1t3q_A 91 KLNALQDSFRRHHALQC------GFCTAGMLATARS 120 (168)
T ss_dssp SCCHHHHHHHHTTCCSS------CSSHHHHHHHHHH
T ss_pred ccCHHHHHHHHhCCCcC------CCchHHHHHHHHH
Confidence 4 678888899999999 6666655554443
No 36
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=97.36 E-value=2.2e-06 Score=109.16 Aligned_cols=73 Identities=11% Similarity=-0.026 Sum_probs=56.0
Q ss_pred CCCCCcEEEEECCEEEEeCCCCcchhhhhhhcCCCCCCCEEEcCCHHHHHHH--------HHHHHHHHHhCCCCCCCCCC
Q psy11935 659 AVNNEKFEVFIDDKKVMVDPGTTVLQPVAACAMPVMKGWRVKTNSEMTRRAR--------EGVMEFLLVNHPLDCPICDQ 730 (1334)
Q Consensus 659 ~~~~~~~~~~idg~~~~v~~g~til~~~~ac~~~~~~gm~v~t~s~~~~~~r--------~~~~~~ll~~hp~~C~~c~~ 730 (1334)
....+.+-+.+++.. + .+.++|. ..||.|.|.||.+...| +.+++|||.+|+.+|.+
T Consensus 311 tGa~dv~vV~~n~i~---~------~ll~~a~---~~Gm~Vit~sp~~~~Grpd~~d~~~~~~le~LLs~~~~~~l~--- 375 (807)
T 3cf4_A 311 SGMPDVIVVDEQCVR---G------DIVPEAQ---KLKIPVIASNPKIMYGLPNRTDADVDETMEELKSGKIPGCVM--- 375 (807)
T ss_dssp HTCCSEEEECSSSCC---T------THHHHHH---HTTCCEEECSTTCCTTCCBCTTSCHHHHHHHHHTTSSSEEEC---
T ss_pred cCCCeEEEEEecCCC---h------HHHHHHH---HCCCEEEEechhhhcCCCccccchHHHHHHHHHhCCCCCcee---
Confidence 445677878888753 1 3345665 68999999999988777 99999999999888854
Q ss_pred CCCCchhhhHHHhCCC
Q psy11935 731 GGECDLQDQSMAFGSD 746 (1334)
Q Consensus 731 ~g~c~lq~~~~~~g~~ 746 (1334)
.|.|.+++++..++..
T Consensus 376 ~g~~~~~elai~~a~~ 391 (807)
T 3cf4_A 376 LDYDKLGELCVRLTME 391 (807)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred eCCccHHHHHHHHHhh
Confidence 5788899877666553
No 37
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=97.31 E-value=5.7e-05 Score=76.99 Aligned_cols=69 Identities=14% Similarity=0.276 Sum_probs=53.2
Q ss_pred CcEEEEECCEEEEe--CCCCcchh------------------------------hhhhhcCCCCC--CCEEEcCCHHH-H
Q psy11935 663 EKFEVFIDDKKVMV--DPGTTVLQ------------------------------PVAACAMPVMK--GWRVKTNSEMT-R 707 (1334)
Q Consensus 663 ~~~~~~idg~~~~v--~~g~til~------------------------------~~~ac~~~~~~--gm~v~t~s~~~-~ 707 (1334)
.+|+|+|||++++| ++|+|||+ ++.||.+|+.+ ||.|.|-.+.. .
T Consensus 3 ~~i~~~vNG~~~~v~~~~~~tLL~~Lr~~~gl~g~k~gC~~G~CGaCtV~vdG~~v~sC~~~~~~~~G~~v~TiEgL~~~ 82 (161)
T 1rm6_C 3 NILRLTLNGRAREDLVPDNMLLLDYLRETVGLTGTKQGCDGGECGACTVLVDDRPRLACSTLAHQVAGKKVETVESLATQ 82 (161)
T ss_dssp EEEEEEETTEEEEEEEETTCBHHHHHHHTTCCTTSCCCSSSSSSCTTEEEETTEEEEGGGSBGGGGTTSEEECGGGSSBT
T ss_pred ceEEEEECCEEEEEecCCcCcHHHHHHHcCCCcccccCCCCCCCCCCEEEECCcEEechHHHHHHhCCceEEEECCCCCC
Confidence 46999999999886 79999999 88999999987 99999943332 1
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCC
Q psy11935 708 RAREGVMEFLLVNHPLDCPICDQG 731 (1334)
Q Consensus 708 ~~r~~~~~~ll~~hp~~C~~c~~~ 731 (1334)
.....+.+.++.+|...|..|.-|
T Consensus 83 ~~~~p~q~a~~~~~~~qCG~Ctpg 106 (161)
T 1rm6_C 83 GTLSKLQAAFHEKLGTQCGFCTPG 106 (161)
T ss_dssp TBCCHHHHHHHHHTCCSSCSSHHH
T ss_pred CccCHHHHHHHHhCCCcCCCCchH
Confidence 122345566677788889887754
No 38
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=97.22 E-value=0.00012 Score=74.76 Aligned_cols=68 Identities=26% Similarity=0.464 Sum_probs=55.1
Q ss_pred cEEEEECCEEEE--eCCCCcchh------------------------------hhhhhcCCCC--CCCEEEcCCHHH--H
Q psy11935 664 KFEVFIDDKKVM--VDPGTTVLQ------------------------------PVAACAMPVM--KGWRVKTNSEMT--R 707 (1334)
Q Consensus 664 ~~~~~idg~~~~--v~~g~til~------------------------------~~~ac~~~~~--~gm~v~t~s~~~--~ 707 (1334)
+|+|+|||++++ |++|+|||+ ++.||.+|+. +|+.|.|-.+.. .
T Consensus 5 ~i~~~vNG~~~~~~v~~~~tLLd~LR~~lgl~g~k~gC~~G~CGaCtV~vdG~~v~SC~~~~~~~~G~~V~TiEgL~~~~ 84 (166)
T 1n62_A 5 HIELTINGHPVEALVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDLDGMSVKSCTMFAVQANGASITTIEGMAAPD 84 (166)
T ss_dssp EEEEEETTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEETTEEEEGGGSBGGGGTTCEEECGGGSSCTT
T ss_pred eEEEEECCEEEEEecCCCCcHHHHHHHcCCCCccccCCCCCCCCCCEEEECCcEEechhhhHHHhCCceEEEeCCCCCcC
Confidence 489999999986 579999999 8999999995 899999963332 2
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCC
Q psy11935 708 RAREGVMEFLLVNHPLDCPICDQG 731 (1334)
Q Consensus 708 ~~r~~~~~~ll~~hp~~C~~c~~~ 731 (1334)
.....|.+.++.+|...|.+|.-|
T Consensus 85 ~~~~pvq~a~~~~~~~QCG~CtpG 108 (166)
T 1n62_A 85 GTLSALQEGFRMMHGLQCGYCTPG 108 (166)
T ss_dssp SCCCHHHHHHHHTTCCSSCSSHHH
T ss_pred CccCHHHHHHHHcCCccCCccchh
Confidence 334668888889999999887754
No 39
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=97.16 E-value=0.00015 Score=96.63 Aligned_cols=71 Identities=18% Similarity=0.136 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcccccC--CccchhhhhcccCccccccCCCCCceecccccccccccccccccccccccc
Q psy11935 810 MTRRAREGVMEFLLVNHPLDCPICDQG--GECDLQDQSMAFGNDLGTTGRGSDMQVGTYVEKLFLSELSGNVIDLCPVGA 887 (1334)
Q Consensus 810 ~~r~~r~~~~~~ll~~h~~~C~~C~~~--g~c~~~~~e~~g~~~~~~~~rg~~~~i~~~~~~~~~~~~cg~cv~~CpvGA 887 (1334)
....+|+.++++|+++|+.+|+.|... |.|.. |.. .+..|+....+. .-.+-.|+.||.|+.+||++|
T Consensus 633 ~~~~f~k~v~~~ll~~~g~~~pv~~~~~dG~~p~------G~~--~~~k~~i~~~~p--~~d~~kCi~Cg~Cv~vCP~~A 702 (1231)
T 2c42_A 633 MTNEFFKNVVKPILTQQGDKLPVSAFEADGRFPL------GTS--QFEKRGVAINVP--QWVPENCIQCNQCAFVCPHSA 702 (1231)
T ss_dssp CCCHHHHHTHHHHHTTCGGGSCGGGSCTTCCBCT------TGG--GGTCCCCCSEEE--EECTTTCCCCCHHHHHCSSCC
T ss_pred hHHHHHHHHHHHHHhCCCCCCCccccCCCCcccC------Ccc--cccccCCCccce--EEeCccCCchhhHHHhCCccc
Confidence 456799999999999999999999765 65653 211 122343322221 112346999999999999999
Q ss_pred ccc
Q psy11935 888 LTS 890 (1334)
Q Consensus 888 l~~ 890 (1334)
|..
T Consensus 703 I~~ 705 (1231)
T 2c42_A 703 ILP 705 (1231)
T ss_dssp EEE
T ss_pred ccc
Confidence 965
No 40
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*
Probab=97.15 E-value=9.7e-05 Score=66.00 Aligned_cols=35 Identities=11% Similarity=-0.022 Sum_probs=28.7
Q ss_pred ccccccccccccccccccccccCCcccCCCCccee
Q psy11935 870 LFLSELSGNVIDLCPVGALTSKPYSFTARPWETRK 904 (1334)
Q Consensus 870 ~~~~~~cg~cv~~CpvGAl~~k~~~~~~r~we~~~ 904 (1334)
...|+.||.|+.+||+|||+...+.....+|.+..
T Consensus 44 ~~~C~~Cg~C~~~CP~~ai~~~~~~~~~~~~~~g~ 78 (80)
T 1jb0_C 44 TEDCVGCKRCETACPTDFLSIRVYLGAETTRSMGL 78 (80)
T ss_dssp GGGCCCCCHHHHHCCSSSCSEEEECCSCCTTTTTC
T ss_pred CCcCcCcCChhhhCCCCccEeeeecchHHHhhhcc
Confidence 34699999999999999998887777777776643
No 41
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.15 E-value=0.072 Score=58.70 Aligned_cols=12 Identities=0% Similarity=-0.535 Sum_probs=6.6
Q ss_pred hhcCCCccceec
Q psy11935 298 QQYSMFSADSTH 309 (1334)
Q Consensus 298 K~~~~GRaTFLP 309 (1334)
..-+|||.=|.+
T Consensus 224 ~Cp~CgRIL~~~ 235 (256)
T 3na7_A 224 TCPYCGRILYAE 235 (256)
T ss_dssp ECTTTCCEEECS
T ss_pred ECCCCCeeEEeC
Confidence 344566665554
No 42
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=97.13 E-value=0.00018 Score=73.23 Aligned_cols=68 Identities=25% Similarity=0.429 Sum_probs=54.2
Q ss_pred cEEEEECCEEEE--eCCCCcchh------------------------------hhhhhcCCCC--CCCEEEcCCHHH-HH
Q psy11935 664 KFEVFIDDKKVM--VDPGTTVLQ------------------------------PVAACAMPVM--KGWRVKTNSEMT-RR 708 (1334)
Q Consensus 664 ~~~~~idg~~~~--v~~g~til~------------------------------~~~ac~~~~~--~gm~v~t~s~~~-~~ 708 (1334)
+++|+|||++++ |++|+|||+ ++.||.+|+. +|+.|.|-.+.. ..
T Consensus 5 ~i~~~vNG~~~~~~v~~~~tLLd~LR~~lgltg~k~gC~~G~CGaCtV~vdG~~v~sC~~~~~~~~G~~I~TiEgL~~~~ 84 (163)
T 1ffv_A 5 IITVNVNGKAQEKAVEPRTLLIHFLREELNLTGAHIGCETSHCGACTVDIDGRSVKSCTHLAVQCDGSEVLTVEGLANKG 84 (163)
T ss_dssp EEEEEETTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEETTEEEEGGGSBGGGGTTCEEECGGGTSBTT
T ss_pred eEEEEECCEEEEEecCCCCcHHHHHHhcCCCcccccCCCCCCCCCCEEEECCcEecchHhhHHHhCCceEEEECCCCCCC
Confidence 689999999985 579999999 8999999998 999999953332 12
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCC
Q psy11935 709 AREGVMEFLLVNHPLDCPICDQG 731 (1334)
Q Consensus 709 ~r~~~~~~ll~~hp~~C~~c~~~ 731 (1334)
....+.+.++.+|...|..|.-|
T Consensus 85 ~l~pvq~a~~~~~~~QCG~CtpG 107 (163)
T 1ffv_A 85 VLHAVQEGFYKEHGLQCGFCTPG 107 (163)
T ss_dssp BCCHHHHHHHHTTCCSSCSSHHH
T ss_pred CcCHHHHHHHHhCCccCccccHh
Confidence 23567778888899999777654
No 43
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.96 E-value=0.098 Score=75.39 Aligned_cols=15 Identities=13% Similarity=-0.024 Sum_probs=10.1
Q ss_pred CCCcccHHHHHHHHH
Q psy11935 1264 PGLAREDWKIIRALS 1278 (1334)
Q Consensus 1264 ~gear~dw~Il~~La 1278 (1334)
+++..++.||++..|
T Consensus 3223 ~t~~~~~~Wi~rGVA 3237 (3245)
T 3vkg_A 3223 DQSTSKQNWYQRSVS 3237 (3245)
T ss_dssp CTTSCHHHHHTTTCE
T ss_pred CCCCCHhHHHHHHHH
Confidence 345677888877544
No 44
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.73 E-value=0.27 Score=50.49 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhH
Q psy11935 122 KEKTIVENAAKQLKQISENEFKQKEK 147 (1334)
Q Consensus 122 ~~~~i~~~~~~~ie~~~~~~~l~n~~ 147 (1334)
....+++....+-..+.+.+-+.+++
T Consensus 128 ~~~SleD~e~kln~aiEr~alLE~El 153 (189)
T 2v71_A 128 TIMSLEDFEQRLNQAIERNAFLESEL 153 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 45
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.67 E-value=0.21 Score=72.00 Aligned_cols=40 Identities=13% Similarity=0.011 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 174 KAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRE 213 (1334)
Q Consensus 174 ~~~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~ 213 (1334)
++.+.+++++++.++.++++...+.+.++.+.+..+.++.
T Consensus 2034 ~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~ 2073 (3245)
T 3vkg_A 2034 VATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVD 2073 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333
No 46
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=96.59 E-value=0.0012 Score=72.91 Aligned_cols=40 Identities=13% Similarity=0.093 Sum_probs=27.3
Q ss_pred hhhhhccCC--CCcccccc----------eeecCCCcccccccccCCC--C--cEEE
Q psy11935 765 VTRQRSWGL--IPSRVFLQ----------SINRHWIGPVAACAMPVMK--G--WRVK 805 (1334)
Q Consensus 765 ~~~~~~~~~--ip~lc~~~----------~v~~~~~~~~~aC~~~v~~--g--m~i~ 805 (1334)
+++++..++ +|+|||+. .|+.++ .++.||.|+|.+ | +.|.
T Consensus 45 Ld~l~~~~~~~~p~l~~~~~c~~g~Cg~C~v~i~G-~~~~aC~~~~~~~~g~~~~ie 100 (252)
T 2h88_B 45 LDALIKIKNELDSTLTFRRSCREGICGSCAMNIAG-GNTLACTKKIDPDLSKTTKIY 100 (252)
T ss_dssp HHHHHHHHHHTCTTCCCCCSCSSSSSCTTEEEETT-EEEEGGGSBCCCCTTSCEEEE
T ss_pred HHHHHHhCcccCCCccccCCCCCCCCCCCEEEECC-cEEccccCCHhHcCCCceEEe
Confidence 466666663 67777754 666543 578899999987 3 5555
No 47
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.58 E-value=0.33 Score=48.55 Aligned_cols=70 Identities=24% Similarity=0.334 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhhhhh
Q psy11935 171 LDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMA----KKVESVMQSQLQQAIHMITSDVTHL 241 (1334)
Q Consensus 171 ~~~~~~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~srl 241 (1334)
.+++..+..+..+++.....+.........+...+..+.+....++ =++..+ ++.|.+-...-+..++|+
T Consensus 93 ~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKal-Q~~~eqE~~~H~~TkarL 166 (168)
T 3o0z_A 93 GDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSL-QQRLEQEVNEHKVTKARL 166 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 3333344444444444443333333333333333333333333333 334444 444444444444444443
No 48
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Probab=96.56 E-value=0.00062 Score=56.49 Aligned_cols=51 Identities=18% Similarity=0.144 Sum_probs=30.7
Q ss_pred cccccCCccchhhhhcccCccccccCCCCCceecccccccccccccccccccccccccc
Q psy11935 831 PICDQGGECDLQDQSMAFGNDLGTTGRGSDMQVGTYVEKLFLSELSGNVIDLCPVGALT 889 (1334)
Q Consensus 831 ~~C~~~g~c~~~~~e~~g~~~~~~~~rg~~~~i~~~~~~~~~~~~cg~cv~~CpvGAl~ 889 (1334)
.+|..+|.|+..|-. .+.+...|....+.. ....|..||.|+++||+|||+
T Consensus 6 ~~C~~C~~C~~~CP~-----~~~~~~~~~~~~~~~---~~~~C~~C~~C~~~CP~~Ai~ 56 (58)
T 1f2g_A 6 DDCMACEACVEICPD-----VFEMNEEGDKAVVIN---PDSDLDCVEEAIDSCPAEAIV 56 (58)
T ss_dssp TTCCCCCHHHHHCTT-----TEEECSSSSSEEESC---TTCCSTHHHHHHHTCSSCCCB
T ss_pred CcCccchHHHHhCCc-----cEEECCCCcEEEeCC---CccchHHHHHHHhhCChhhEE
Confidence 344444777998854 122322232222221 133589999999999999994
No 49
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.50 E-value=0.31 Score=48.72 Aligned_cols=24 Identities=13% Similarity=0.021 Sum_probs=9.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q psy11935 165 GATKLMLDFKAKCEVYEAENKKLK 188 (1334)
Q Consensus 165 ~~~~~~~~~~~~l~~l~~~l~~~~ 188 (1334)
....+...+...+..++.+...+.
T Consensus 115 k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 115 KVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333333344444444444444333
No 50
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=96.36 E-value=0.00061 Score=64.09 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=18.1
Q ss_pred ccccccccccccccccccccc
Q psy11935 870 LFLSELSGNVIDLCPVGALTS 890 (1334)
Q Consensus 870 ~~~~~~cg~cv~~CpvGAl~~ 890 (1334)
...|+.||.|+++||+|||+-
T Consensus 80 ~~~C~~Cg~C~~~CP~~Ai~~ 100 (103)
T 1xer_A 80 EQACIFCMACVNVCPVAAIDV 100 (103)
T ss_dssp GGGCCCCCHHHHHCTTCCEEE
T ss_pred cccccChhhHHHhccccceEe
Confidence 346999999999999999953
No 51
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=96.32 E-value=0.00064 Score=60.89 Aligned_cols=28 Identities=18% Similarity=0.373 Sum_probs=22.2
Q ss_pred ccccccccccccccccccccCCcccCCC
Q psy11935 872 LSELSGNVIDLCPVGALTSKPYSFTARP 899 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~k~~~~~~r~ 899 (1334)
.|..||.|+++||+|||+-....|..+|
T Consensus 50 ~c~~C~~C~~~CP~~AI~~~~~~~~~~~ 77 (81)
T 1iqz_A 50 LIDDMMDAFEGCPTDSIKVADEPFDGDP 77 (81)
T ss_dssp GHHHHHHHHHHCTTCCEEEESSCCTTCT
T ss_pred HHHHHHHHHHhCCHhHEEEecCCCCCCc
Confidence 4789999999999999976655555554
No 52
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=96.31 E-value=0.0029 Score=77.26 Aligned_cols=28 Identities=14% Similarity=0.286 Sum_probs=23.9
Q ss_pred CCcEEEEECCEEEEeCCCCcchhhhhhh
Q psy11935 662 NEKFEVFIDDKKVMVDPGTTVLQPVAAC 689 (1334)
Q Consensus 662 ~~~~~~~idg~~~~v~~g~til~~~~ac 689 (1334)
+.+|+|+|||++|++++|+||++...++
T Consensus 13 ~~~v~~~~dg~~~~~~~g~ti~~a~~~~ 40 (493)
T 1y56_A 13 GKKVTIYFEGKELEAYEGEKLPVALLAN 40 (493)
T ss_dssp SCEEEEEETTEEEEEETTCBHHHHHHHT
T ss_pred CCeEEEEECCEEEEecCCCHHHHHHHHC
Confidence 4579999999999999999999955444
No 53
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=96.22 E-value=0.0023 Score=53.03 Aligned_cols=19 Identities=37% Similarity=0.656 Sum_probs=17.0
Q ss_pred ccccccccccccccccccc
Q psy11935 871 FLSELSGNVIDLCPVGALT 889 (1334)
Q Consensus 871 ~~~~~cg~cv~~CpvGAl~ 889 (1334)
..|..||.|+++||+|||+
T Consensus 39 ~~c~~C~~C~~~CP~~Ai~ 57 (59)
T 1dwl_A 39 STAECAQDAIDACPVEAIS 57 (59)
T ss_dssp CCCGGGGTGGGGSTTCCEE
T ss_pred hhhhHHHHHHHhCCHhhEE
Confidence 3588999999999999995
No 54
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A
Probab=96.20 E-value=0.00047 Score=58.59 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=17.5
Q ss_pred cccccccccccccccccccc
Q psy11935 871 FLSELSGNVIDLCPVGALTS 890 (1334)
Q Consensus 871 ~~~~~cg~cv~~CpvGAl~~ 890 (1334)
..|+.||.|+++||+|||+.
T Consensus 42 ~~C~~C~~C~~~CP~~Ai~~ 61 (64)
T 1dax_A 42 ASQEEVEEAMDTCPVQCIHW 61 (64)
T ss_dssp SCHHHHHHHHHHSSSCCEEC
T ss_pred cchhHHHHHHHhCCHhhEee
Confidence 35889999999999999954
No 55
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=96.17 E-value=0.0011 Score=78.70 Aligned_cols=48 Identities=15% Similarity=0.292 Sum_probs=31.0
Q ss_pred CCCcccccCCccchhhhhcccCccccccCCCCCceeccccccccccccccccccccccccccc
Q psy11935 828 LDCPICDQGGECDLQDQSMAFGNDLGTTGRGSDMQVGTYVEKLFLSELSGNVIDLCPVGALTS 890 (1334)
Q Consensus 828 ~~C~~C~~~g~c~~~~~e~~g~~~~~~~~rg~~~~i~~~~~~~~~~~~cg~cv~~CpvGAl~~ 890 (1334)
+.|.+| ++.|-. .++.+.. +....+ .....|+.||.|+.+||+|||+.
T Consensus 36 i~Cg~C------~~~CP~----~ai~~~~-~~~~~i----~~~~~C~~Cg~C~~~CP~~Ai~~ 83 (421)
T 1hfe_L 36 IGCDTC------SQYCPT----AAIFGEM-GEPHSI----PHIEACINCGQCLTHCPENAIYE 83 (421)
T ss_dssp CCCCHH------HHHCTT----CCCBCCT-TSCCBC----CCGGGCCCCCTTGGGCTTCCEEE
T ss_pred CCccHH------HHhcCc----Cceeccc-ccceee----cChhhCCchhhHHHhhCcCCccc
Confidence 777766 898854 2333322 111111 02346999999999999999976
No 56
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Probab=96.16 E-value=0.00093 Score=55.71 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=17.4
Q ss_pred cccccccccccccccccccc
Q psy11935 871 FLSELSGNVIDLCPVGALTS 890 (1334)
Q Consensus 871 ~~~~~cg~cv~~CpvGAl~~ 890 (1334)
..|..||.|+++||+|||+-
T Consensus 39 ~~c~~C~~C~~~CP~~Ai~~ 58 (60)
T 1rof_A 39 TDLPCAKDAADSCPTGAISV 58 (60)
T ss_dssp CCSTTHHHHHHHCTTCCEEC
T ss_pred hhHHHHHHHHHhCCHhHEEE
Confidence 35889999999999999953
No 57
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=96.14 E-value=0.0005 Score=70.76 Aligned_cols=88 Identities=16% Similarity=0.286 Sum_probs=53.7
Q ss_pred cccccccccCCC--CcEEEcCCHHHHHHH-HHHHHHHhhCCCCCCcccccCCccchhhhhcccCccccccCCC-CCceec
Q psy11935 789 GPVAACAMPVMK--GWRVKTNSEMTRRAR-EGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGNDLGTTGRG-SDMQVG 864 (1334)
Q Consensus 789 ~~~~aC~~~v~~--gm~i~t~s~~~r~~r-~~~~~~ll~~h~~~C~~C~~~g~c~~~~~e~~g~~~~~~~~rg-~~~~i~ 864 (1334)
.++.||.|++.+ ||.|.|-.+.....+ +.+.+.++.+|.+.|+.| .-.. +.-...+-...+. .+..|.
T Consensus 63 ~~v~sC~~~~~~~~G~~v~Tiegl~~~~~~~~~q~a~~~~~~~qCG~C------~pg~--i~~a~~ll~~~~~p~~~~i~ 134 (168)
T 1t3q_A 63 APMRSCLTLAVQAEGCSIETVEGLSQGEKLNALQDSFRRHHALQCGFC------TAGM--LATARSILAENPAPSRDEVR 134 (168)
T ss_dssp EEEEGGGSBGGGGTTCEEECGGGTCCSSSCCHHHHHHHHTTCCSSCSS------HHHH--HHHHHHHHHHCSSCCHHHHH
T ss_pred CEeechhhHHHHhCCCeEEEEcCCCCccccCHHHHHHHHhCCCcCCCc------hHHH--HHHHHHHHhcCCCCCHHHHH
Confidence 588999999988 999999544332222 557778889999999988 3210 1101111111121 122332
Q ss_pred cc-cccccccccccccccccc
Q psy11935 865 TY-VEKLFLSELSGNVIDLCP 884 (1334)
Q Consensus 865 ~~-~~~~~~~~~cg~cv~~Cp 884 (1334)
.. .+....|..|++|+++|-
T Consensus 135 ~~l~gnlcRCt~y~~~v~A~~ 155 (168)
T 1t3q_A 135 EVMSGNLCRCTGYETIIDAIT 155 (168)
T ss_dssp HHGGGSCCSSSCSHHHHHHHT
T ss_pred HHHcCCcccCCCchHHHHHHH
Confidence 22 234557999999999993
No 58
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.08 E-value=0.22 Score=65.81 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 521 EKLKEFQTQLDSAELTLHREFQQK 544 (1334)
Q Consensus 521 ~~l~~~~~~~a~le~~~~~~~~~~ 544 (1334)
.++..++.+++.+++++.....+.
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~ 1007 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEK 1007 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333333
No 59
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=96.04 E-value=0.0024 Score=52.34 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=17.0
Q ss_pred ccccccccccccccccccc
Q psy11935 871 FLSELSGNVIDLCPVGALT 889 (1334)
Q Consensus 871 ~~~~~cg~cv~~CpvGAl~ 889 (1334)
..|+.||.|+++||+|||+
T Consensus 35 ~~C~~C~~C~~~CP~~ai~ 53 (55)
T 2fdn_A 35 DTCIDCGACAGVCPVDAPV 53 (55)
T ss_dssp TTCCCCCHHHHTCTTCCEE
T ss_pred ccCcChhChHHHcccccee
Confidence 4689999999999999994
No 60
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=96.01 E-value=0.0013 Score=68.83 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=18.9
Q ss_pred cccccccccccccccccccccc
Q psy11935 870 LFLSELSGNVIDLCPVGALTSK 891 (1334)
Q Consensus 870 ~~~~~~cg~cv~~CpvGAl~~k 891 (1334)
...|+.||.|+.+||+|||+..
T Consensus 95 ~~~C~~C~~C~~~CP~~Ai~~~ 116 (182)
T 3i9v_9 95 MLRCIFCGLCEEACPTGAIVLG 116 (182)
T ss_dssp TTTCCCCCHHHHHCSSSCEEEC
T ss_pred CCcCcChhChhhhCCccceEec
Confidence 3469999999999999999654
No 61
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A
Probab=95.99 E-value=0.00078 Score=57.43 Aligned_cols=18 Identities=28% Similarity=0.580 Sum_probs=15.9
Q ss_pred cccccccccccccccccc
Q psy11935 873 SELSGNVIDLCPVGALTS 890 (1334)
Q Consensus 873 ~~~cg~cv~~CpvGAl~~ 890 (1334)
|..||.|+++||+|||+.
T Consensus 46 c~~c~~C~~~CP~~Ai~~ 63 (66)
T 1sj1_A 46 YNCAKEAMEACPVSAITI 63 (66)
T ss_dssp HHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHhhCCHhhEEE
Confidence 678999999999999953
No 62
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=95.99 E-value=0.00095 Score=73.37 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=17.0
Q ss_pred cccccccccccccccccccc
Q psy11935 869 KLFLSELSGNVIDLCPVGAL 888 (1334)
Q Consensus 869 ~~~~~~~cg~cv~~CpvGAl 888 (1334)
....|..||+|+++||+|.-
T Consensus 204 ~~~~C~~Cg~C~~vCP~~i~ 223 (241)
T 2bs2_B 204 GVFGCMTLLACHDVCPKNLP 223 (241)
T ss_dssp TGGGCCCCCHHHHHCTTCCC
T ss_pred CcccCcccChhhHhcCCCCC
Confidence 45679999999999999854
No 63
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=95.88 E-value=0.0023 Score=71.19 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=16.6
Q ss_pred cccccccccccccccccccc
Q psy11935 869 KLFLSELSGNVIDLCPVGAL 888 (1334)
Q Consensus 869 ~~~~~~~cg~cv~~CpvGAl 888 (1334)
..+.|..||+|..+||+|-=
T Consensus 235 ~l~~C~~Cg~C~~vCP~gI~ 254 (282)
T 3vr8_B 235 SAFKCHTIMNCTKTCPKHLN 254 (282)
T ss_pred CcccChhhCCccccCcCCCC
Confidence 35679999999999998753
No 64
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=95.70 E-value=0.0034 Score=55.41 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=18.5
Q ss_pred ccccccccccccccccccccc
Q psy11935 871 FLSELSGNVIDLCPVGALTSK 891 (1334)
Q Consensus 871 ~~~~~cg~cv~~CpvGAl~~k 891 (1334)
..|+.||.|+.+||+|||+.+
T Consensus 37 ~~C~~Cg~C~~~CP~~ai~~~ 57 (77)
T 1bc6_A 37 DVCIDCGACEAVCPVSAIYHE 57 (77)
T ss_dssp TTCCSCCSHHHHSGGGSSEET
T ss_pred ccCcCccCCHhhcCccceEec
Confidence 469999999999999999754
No 65
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=95.68 E-value=0.014 Score=59.95 Aligned_cols=57 Identities=18% Similarity=0.208 Sum_probs=34.7
Q ss_pred CCCcccccCCccchhhhhcccCccccccCCCCCceeccccccccccccccccccccccccccccCC
Q psy11935 828 LDCPICDQGGECDLQDQSMAFGNDLGTTGRGSDMQVGTYVEKLFLSELSGNVIDLCPVGALTSKPY 893 (1334)
Q Consensus 828 ~~C~~C~~~g~c~~~~~e~~g~~~~~~~~rg~~~~i~~~~~~~~~~~~cg~cv~~CpvGAl~~k~~ 893 (1334)
+.|..|. .+.|+..|- ..++.+...+.... .-....|+.||.|+.+||+|||+...+
T Consensus 10 ~gC~~c~-~~~C~~~CP----~~ai~~~~~~~~~~----~~d~~~C~~Cg~Cv~~CP~~Ai~~~~~ 66 (166)
T 3gyx_B 10 DGCKGGE-KTACMYICP----NDLMILDPEEMKAF----NQEPEACWECYSCIKICPQGAITARPY 66 (166)
T ss_dssp CCCCSSS-CCHHHHHCT----TSCEEEETTTTEEE----ESCGGGCCCCCHHHHHCSSCCEEECCC
T ss_pred CCCCCCC-cchhHHhCC----ccccEEecCCceeE----ecCcccCcccChHhHhCCccceEEecc
Confidence 5665442 346788873 23444433222111 112336999999999999999977654
No 66
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=95.67 E-value=1.9 Score=42.80 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=10.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy11935 90 QTQLNNNVKEKLKEFQTQLDSAELTL 115 (1334)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~~~~~~l 115 (1334)
+.+++. +..++++.....+.++..+
T Consensus 76 EeqIk~-L~~kLKEAE~RAE~AERsv 100 (155)
T 2efr_A 76 EEEIKV-LSDKLKEAETRAEFAERSV 100 (155)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 444444 4444444444444433333
No 67
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=95.60 E-value=1.8 Score=42.99 Aligned_cols=9 Identities=22% Similarity=0.615 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q psy11935 66 KAQDEIQTL 74 (1334)
Q Consensus 66 ~l~~~i~~l 74 (1334)
.++.+++..
T Consensus 4 ~lE~qlkea 12 (155)
T 2efr_A 4 QLEDKVEEL 12 (155)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444444
No 68
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.49 E-value=0.19 Score=66.39 Aligned_cols=15 Identities=20% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy11935 33 QKAQDEIQTLLAKSA 47 (1334)
Q Consensus 33 ~~lq~~i~~l~~~ie 47 (1334)
..|+..+.+++.+++
T Consensus 924 ~~LE~kl~eLq~rL~ 938 (1080)
T 2dfs_A 924 IGLENKIMQLQRKID 938 (1080)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 69
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2
Probab=95.42 E-value=0.0031 Score=55.87 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=18.9
Q ss_pred cccccccccccccccccccccC
Q psy11935 871 FLSELSGNVIDLCPVGALTSKP 892 (1334)
Q Consensus 871 ~~~~~cg~cv~~CpvGAl~~k~ 892 (1334)
..|+.||.|+.+||+|||+.+.
T Consensus 37 ~~C~~C~~C~~~CP~~Ai~~~~ 58 (78)
T 1h98_A 37 EECIDCGACVPACPVNAIYPEE 58 (78)
T ss_dssp TTCCCCCTHHHHCTTCCEEEGG
T ss_pred ccCCcHhHHHHhCCccceEecc
Confidence 3699999999999999997543
No 70
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.41 E-value=0.8 Score=44.50 Aligned_cols=31 Identities=6% Similarity=0.120 Sum_probs=13.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy11935 53 LREFYQTQLNNNQKAQDEIQTLLAKSASIKT 83 (1334)
Q Consensus 53 ~~er~~~~~~~~~~l~~~i~~l~~~~~~~~~ 83 (1334)
..++...+......++..+.++.++++..+.
T Consensus 67 ~EE~~~~L~~~k~eLe~~l~el~~rleeeee 97 (129)
T 2fxo_A 67 AEERCDQLIKNKIQLEAKVKEMNKRLEDEEE 97 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443333
No 71
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=95.34 E-value=0.0063 Score=54.12 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=19.1
Q ss_pred cccccccc------ccccccccccccccC
Q psy11935 870 LFLSELSG------NVIDLCPVGALTSKP 892 (1334)
Q Consensus 870 ~~~~~~cg------~cv~~CpvGAl~~k~ 892 (1334)
...|+.|| .|+++||+|||+..+
T Consensus 34 ~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~ 62 (80)
T 1rgv_A 34 PTKCSECVGAFDEPQCRLVCPADCIPDNP 62 (80)
T ss_dssp TTTCCTTTTTCSSCHHHHHCSSCCCCBCG
T ss_pred chhCcCCCCcCCccHHHHhcCcccEEecC
Confidence 34699999 999999999996543
No 72
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=95.31 E-value=0.0049 Score=58.22 Aligned_cols=21 Identities=19% Similarity=0.096 Sum_probs=18.6
Q ss_pred ccccccccccccccccccccC
Q psy11935 872 LSELSGNVIDLCPVGALTSKP 892 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~k~ 892 (1334)
.|+.||.|+.+||+|||+...
T Consensus 38 ~C~~Cg~C~~~CP~~ai~~~~ 58 (106)
T 7fd1_A 38 ECIDCALCEPECPAQAIFSED 58 (106)
T ss_dssp TCCCCCTTGGGCTTCCEEEGG
T ss_pred cCCChhhhHHhCCChhhhccc
Confidence 599999999999999996654
No 73
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=95.31 E-value=0.0068 Score=80.66 Aligned_cols=53 Identities=9% Similarity=0.124 Sum_probs=33.6
Q ss_pred CCCcccccCCccchhhhhcccCccccccCCCCCceecccccccccccccccccccccc-ccccccCC
Q psy11935 828 LDCPICDQGGECDLQDQSMAFGNDLGTTGRGSDMQVGTYVEKLFLSELSGNVIDLCPV-GALTSKPY 893 (1334)
Q Consensus 828 ~~C~~C~~~g~c~~~~~e~~g~~~~~~~~rg~~~~i~~~~~~~~~~~~cg~cv~~Cpv-GAl~~k~~ 893 (1334)
+.|..| +..|-. .+..++.+...+....+. ..|+.||.|+.+||+ |||+..+.
T Consensus 954 ~~Cg~C------~~~CP~-~~~~ai~~~~~~~~~~~~------~~C~~Cg~C~~~CP~~~Ai~~~~~ 1007 (1025)
T 1gte_A 954 INCGKC------YMTCND-SGYQAIQFDPETHLPTVT------DTCTGCTLCLSVCPIIDCIRMVSR 1007 (1025)
T ss_dssp CCCCHH------HHHHHH-HSCSCEEECTTTCCEEEC------TTCCCCCHHHHHCSSTTTEEEEEC
T ss_pred cccCHH------HHhcCc-cccCCEEEeCCCceEEeC------ccCCChhHHHhhCCCCCCEEEecC
Confidence 665555 999953 223445444332222221 369999999999999 99976543
No 74
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=95.26 E-value=0.007 Score=61.08 Aligned_cols=66 Identities=15% Similarity=0.325 Sum_probs=46.8
Q ss_pred cEEEEECCEEEE--eCCCCcchh------------------------------hhhhhcCCCC--CCCEEEcCCHHHHH-
Q psy11935 664 KFEVFIDDKKVM--VDPGTTVLQ------------------------------PVAACAMPVM--KGWRVKTNSEMTRR- 708 (1334)
Q Consensus 664 ~~~~~idg~~~~--v~~g~til~------------------------------~~~ac~~~~~--~gm~v~t~s~~~~~- 708 (1334)
+++|+|||++++ |++++|+|+ ++.||.+|+. +|+.|.|=-.-...
T Consensus 5 ~i~~~vNG~~~~v~v~p~~tLLd~LR~~lgltgtk~gC~~G~CGACtV~vdG~~v~sC~~~~~~~~G~~I~TiEgl~~~~ 84 (160)
T 3hrd_D 5 TINLNLNGEARSIVTEPNKRLLDLLREDFGLTSVKEGCSEGECGACTVIFNGDPVTTCCMLAGQADESTIITLEGVAEDG 84 (160)
T ss_dssp EEEEEETTEEEEEEECSSSBHHHHHHTTSCCTTSCCSSSSSSSCTTEEEETTEEEEGGGSBGGGGTTEEEECGGGTSBTT
T ss_pred eEEEEECCEEEEEecCCCCCHHHHHHHhcCCCccccccCCCCCCCCEEEECCEEEEchhhhhhhhCCCceEEeCCCCCCC
Confidence 489999998765 689999999 8899999996 89999982111100
Q ss_pred HHHHHHHHHHHhCCCCCCCCC
Q psy11935 709 AREGVMEFLLVNHPLDCPICD 729 (1334)
Q Consensus 709 ~r~~~~~~ll~~hp~~C~~c~ 729 (1334)
.-..|-+-+..+|-.-|..|-
T Consensus 85 ~l~pvq~af~~~~~~QCGfCt 105 (160)
T 3hrd_D 85 KPSLLQQCFLEAGAVQCGYCT 105 (160)
T ss_dssp BCCHHHHHHHHHTCCSSCSSH
T ss_pred ccCHHHHHHHHcCCCcCCcch
Confidence 012445555667888785554
No 75
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=95.09 E-value=0.0078 Score=53.81 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=18.5
Q ss_pred ccccccc------ccccccccccccccC
Q psy11935 871 FLSELSG------NVIDLCPVGALTSKP 892 (1334)
Q Consensus 871 ~~~~~cg------~cv~~CpvGAl~~k~ 892 (1334)
..|+.|| .|+++||+|||+...
T Consensus 35 ~~C~~C~~~~~~~~C~~~CP~~Ai~~~~ 62 (82)
T 2fgo_A 35 NLCTECVGHYDEPQCQQVCPVDCIPLDD 62 (82)
T ss_dssp TTCCTTTTTCSSCHHHHHCTTCCCCBCT
T ss_pred hhCccCCCcCCCCHhHhhCCcccEEccC
Confidence 4689999 999999999996543
No 76
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=95.04 E-value=0.0039 Score=62.96 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=19.9
Q ss_pred cccccccccccccccccccccCC
Q psy11935 871 FLSELSGNVIDLCPVGALTSKPY 893 (1334)
Q Consensus 871 ~~~~~cg~cv~~CpvGAl~~k~~ 893 (1334)
..|+.||.|+.+||+|||....+
T Consensus 45 ~~C~~Cg~Cv~~CP~~AI~~~~~ 67 (150)
T 1jnr_B 45 DMCWECYSCVKMCPQGAIDVRGY 67 (150)
T ss_dssp GGCCCCCHHHHHCTTCCEEECCC
T ss_pred ccCcCHhHHHHhCCccceEecCc
Confidence 46999999999999999977654
No 77
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}
Probab=94.95 E-value=0.0076 Score=56.73 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=18.5
Q ss_pred ccccccccccccccccccccc
Q psy11935 871 FLSELSGNVIDLCPVGALTSK 891 (1334)
Q Consensus 871 ~~~~~cg~cv~~CpvGAl~~k 891 (1334)
..|+.||.|+.+||+|||+..
T Consensus 37 ~~C~~Cg~C~~~CP~~Ai~~~ 57 (105)
T 2v2k_A 37 DECVDCGACEPVCPVEAIYYE 57 (105)
T ss_dssp TTCCCCCCSGGGCTTCCEEEG
T ss_pred CcCcchhhHHHhCCccCEEec
Confidence 369999999999999999654
No 78
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=94.87 E-value=2.8 Score=41.48 Aligned_cols=72 Identities=11% Similarity=0.045 Sum_probs=38.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy11935 164 PGATKLMLDFKAKCEVYEAEN-KKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQAIHMITS 236 (1334)
Q Consensus 164 ~~~~~~~~~~~~~l~~l~~~l-~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (1334)
...+.....++.+++++...| ++.+.-.......-..++.+...+..++.+....+..+ +.++..+..-+..
T Consensus 75 ~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~l-q~ql~~LK~v~~~ 147 (154)
T 2ocy_A 75 TKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTL-TLQLKNLKKVMHS 147 (154)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 333444444455555555433 33334444444455555556666666666666666666 6666655554443
No 79
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=94.87 E-value=0.017 Score=53.33 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=20.2
Q ss_pred cEEEE-ECC-EEEEeCCCCcchhhhh
Q psy11935 664 KFEVF-IDD-KKVMVDPGTTVLQPVA 687 (1334)
Q Consensus 664 ~~~~~-idg-~~~~v~~g~til~~~~ 687 (1334)
.|+|+ +|| ++|+|++|+|||+...
T Consensus 3 ~v~~~~~~g~~~~~~~~g~tlL~a~~ 28 (95)
T 1frr_A 3 KTVLKTPSGEFTLDVPEGTTILDAAE 28 (95)
T ss_dssp EEEEEETTEEEEEEECTTCCHHHHHH
T ss_pred EEEEEeCCCcEEEEeCCCCcHHHHHH
Confidence 47776 898 9999999999999543
No 80
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A
Probab=94.83 E-value=0.0087 Score=53.53 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=18.5
Q ss_pred ccccccc------ccccccccccccccC
Q psy11935 871 FLSELSG------NVIDLCPVGALTSKP 892 (1334)
Q Consensus 871 ~~~~~cg------~cv~~CpvGAl~~k~ 892 (1334)
..|+.|| .|+++||+|||+..+
T Consensus 35 ~~C~~C~~~~~~~~C~~~CP~~Ai~~~~ 62 (82)
T 3eun_A 35 SLCTECVGHYETSQCVEVCPVDAIIKDP 62 (82)
T ss_dssp GGCCTTTTTCSSCHHHHHCTTCCEEECG
T ss_pred hhcCCCCCCCCccHHHHhCCccceEEcC
Confidence 3699999 999999999996543
No 81
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}
Probab=94.45 E-value=0.014 Score=52.62 Aligned_cols=21 Identities=10% Similarity=0.238 Sum_probs=18.2
Q ss_pred ccccccc------cccccccc-cccccc
Q psy11935 871 FLSELSG------NVIDLCPV-GALTSK 891 (1334)
Q Consensus 871 ~~~~~cg------~cv~~Cpv-GAl~~k 891 (1334)
..|+.|| .|+++||+ |||+..
T Consensus 35 ~~C~~C~~~~~~~~C~~~CP~~~Ai~~~ 62 (85)
T 2zvs_A 35 DKCTECVGHYETPTCQKVCPIPNTIVKD 62 (85)
T ss_dssp GGCCTTTTTCSSCHHHHHCSSCCEEECT
T ss_pred hhccCCCCcCCccHhhHhCcCCCCEEec
Confidence 4689999 99999999 999654
No 82
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.34 E-value=0.2 Score=62.56 Aligned_cols=7 Identities=14% Similarity=0.140 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy11935 198 LKETNHL 204 (1334)
Q Consensus 198 l~~l~~~ 204 (1334)
+++.+++
T Consensus 553 ~~~~~~~ 559 (597)
T 3oja_B 553 LDNKRAK 559 (597)
T ss_dssp HHHHHHH
T ss_pred HhhhhhH
Confidence 3333333
No 83
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.24 E-value=0.11 Score=64.83 Aligned_cols=6 Identities=0% Similarity=-0.191 Sum_probs=2.1
Q ss_pred HHHHHH
Q psy11935 199 KETNHL 204 (1334)
Q Consensus 199 ~~l~~~ 204 (1334)
.++++.
T Consensus 547 ~~le~~ 552 (597)
T 3oja_B 547 IALEKQ 552 (597)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 84
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*
Probab=94.14 E-value=0.011 Score=70.78 Aligned_cols=33 Identities=9% Similarity=-0.104 Sum_probs=24.8
Q ss_pred ccccccccccccccccccccCCcccCCCCcceeeeeecccCC
Q psy11935 872 LSELSGNVIDLCPVGALTSKPYSFTARPWETRKTESVDVLDA 913 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~k~~~~~~r~we~~~~~s~c~~C~ 913 (1334)
.|+.||.|+.+||+|||+.... ......|.+|+
T Consensus 216 kCigCg~Cv~~CP~~AI~~~~~---------~~~~~kC~~Cg 248 (512)
T 1q16_B 216 KCRGWRMCITGCPYKKIYFNWK---------SGKSEKCIFCY 248 (512)
T ss_dssp TCCCCCCHHHHCTTCCEEEETT---------TTEEEECCTTH
T ss_pred HCCCchHHHhhCCccceecccC---------CCCcccCcCCC
Confidence 6999999999999999964422 12356687776
No 85
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=93.95 E-value=0.014 Score=67.04 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=24.7
Q ss_pred ccccccccccccccccccccCCcccCCCCcceeeeeecccCC
Q psy11935 872 LSELSGNVIDLCPVGALTSKPYSFTARPWETRKTESVDVLDA 913 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~k~~~~~~r~we~~~~~s~c~~C~ 913 (1334)
.|+.||.|+.+||+|||..... .....-|.+|+
T Consensus 183 kCigCg~Cv~aCP~~Ai~~~~~---------~~~~~kC~~C~ 215 (352)
T 2ivf_B 183 RCKGHRHCVEACPYKAIYFNPV---------SQTSEKCILCY 215 (352)
T ss_dssp TCCCCCHHHHHCTTCCEEEETT---------TTEEEECCTTH
T ss_pred hcCCchHHHhhcCccceecccc---------cccccccCCCc
Confidence 6999999999999999954432 23456677774
No 86
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=93.52 E-value=0.067 Score=49.52 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=19.5
Q ss_pred cEEEEE-C---CEEEEeCCCCcchhhhh
Q psy11935 664 KFEVFI-D---DKKVMVDPGTTVLQPVA 687 (1334)
Q Consensus 664 ~~~~~i-d---g~~~~v~~g~til~~~~ 687 (1334)
.|+|.. | |++|+|++|+|||+...
T Consensus 4 ~V~~~~~~~~~~~~~~~~~g~tlL~a~~ 31 (98)
T 1frd_A 4 QVRLINKKQDIDTTIEIDEETTILDGAE 31 (98)
T ss_dssp EEEEEETTTTEEEEEEEETTSCHHHHHH
T ss_pred EEEEEeCCCCCCEEEEeCCCCcHHHHHH
Confidence 477777 4 69999999999999543
No 87
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=93.48 E-value=0.11 Score=47.97 Aligned_cols=25 Identities=4% Similarity=0.033 Sum_probs=21.8
Q ss_pred CCcEEEEEC-----CEEEEeCCCCcchhhh
Q psy11935 662 NEKFEVFID-----DKKVMVDPGTTVLQPV 686 (1334)
Q Consensus 662 ~~~~~~~id-----g~~~~v~~g~til~~~ 686 (1334)
+.|++|+|+ |++|+|++|+|||+..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~g~tlL~a~ 31 (98)
T 1jq4_A 2 QRVHTITAVTEDGESLRFECRSDEDVITAA 31 (98)
T ss_dssp CCEEEEEEEETTTEEEEEEEESCCTHHHHH
T ss_pred CCcEEEEEEecCCCcEEEEeCCCChHHHHH
Confidence 458899998 8999999999999954
No 88
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=93.37 E-value=6.1 Score=38.23 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 13 KSASIKTELREFYQTQLNNNQKAQDEIQTLLA 44 (1334)
Q Consensus 13 ~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~ 44 (1334)
.++.++..++..+...+.....+......+.+
T Consensus 17 ~~~eel~~lke~l~k~e~~r~ele~~~~~l~~ 48 (129)
T 2fxo_A 17 SMKEEFTRLKEALEKSEARRKELEEKMVSLLQ 48 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 89
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=93.29 E-value=1.9 Score=50.27 Aligned_cols=44 Identities=5% Similarity=0.059 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 179 VYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESV 222 (1334)
Q Consensus 179 ~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 222 (1334)
+|+..+..++.++...-.+|+.|+..++++..+++.|+..+...
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiq 157 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIK 157 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333445555555555555555555544444
No 90
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=92.96 E-value=0.0029 Score=80.69 Aligned_cols=91 Identities=11% Similarity=-0.014 Sum_probs=50.9
Q ss_pred cccccccCCCCcEEEcCCHHHHHHH--------HHHHHHHhhCCCCCCcccccCCccchhh--hhcccCccccccCCCCC
Q psy11935 791 VAACAMPVMKGWRVKTNSEMTRRAR--------EGVMEFLLVNHPLDCPICDQGGECDLQD--QSMAFGNDLGTTGRGSD 860 (1334)
Q Consensus 791 ~~aC~~~v~~gm~i~t~s~~~r~~r--------~~~~~~ll~~h~~~C~~C~~~g~c~~~~--~e~~g~~~~~~~~rg~~ 860 (1334)
+++|. +.||.|.|.++....-| +.+++++|++|+..|.. .|.|...- .++ +.....+.....
T Consensus 329 l~~a~---~~Gm~Vit~sp~~~~Grpd~~d~~~~~~le~LLs~~~~~~l~---~g~~~~~elai~~-a~~~~p~r~~~~- 400 (807)
T 3cf4_A 329 VPEAQ---KLKIPVIASNPKIMYGLPNRTDADVDETMEELKSGKIPGCVM---LDYDKLGELCVRL-TMEMAPIRDAAG- 400 (807)
T ss_dssp HHHHH---HTTCCEEECSTTCCTTCCBCTTSCHHHHHHHHHTTSSSEEEC---CCHHHHHHHHHHH-HHHHHHHHHHTT-
T ss_pred HHHHH---HCCCEEEEechhhhcCCCccccchHHHHHHHHHhCCCCCcee---eCCccHHHHHHHH-HhhccCCccccc-
Confidence 45555 68999999888775444 88999999999766632 34333211 010 110011110000
Q ss_pred ceecccc----cccccccccccccccccccccc
Q psy11935 861 MQVGTYV----EKLFLSELSGNVIDLCPVGALT 889 (1334)
Q Consensus 861 ~~i~~~~----~~~~~~~~cg~cv~~CpvGAl~ 889 (1334)
..+.+.. .....|+.||.|+.+||+++.+
T Consensus 401 ~~~i~~~~~i~~~~~~Ci~CG~C~~~CP~~~~~ 433 (807)
T 3cf4_A 401 ITALPTDEELVNMVAKCADCGACLLACPEEIDI 433 (807)
T ss_dssp CCCSCCHHHHHHHHHHCCCCCHHHHHCTTCCCH
T ss_pred cccccccHHHHHhHHhCCCCCchhhhCCCCCch
Confidence 0111111 1123599999999999999853
No 91
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=92.42 E-value=9.2 Score=37.81 Aligned_cols=29 Identities=14% Similarity=-0.040 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11935 531 DSAELTLHREFQQKEKTIVENAAKQLKQISE 561 (1334)
Q Consensus 531 a~le~~~~~~~~~~~~~~~~~~~~~~~~~l~ 561 (1334)
+.++.+...+..++.+.+.. ++.++.++.
T Consensus 111 ~~~e~r~~~L~~ql~e~~~~--l~~lq~ql~ 139 (154)
T 2ocy_A 111 YAIEILNKRLTEQLREKDTL--LDTLTLQLK 139 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 33344444444443333333 333333333
No 92
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=92.37 E-value=4 Score=37.69 Aligned_cols=11 Identities=9% Similarity=-0.064 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q psy11935 23 EFYQTQLNNNQ 33 (1334)
Q Consensus 23 ~~l~~l~~~~~ 33 (1334)
..++.+....+
T Consensus 9 kKm~~lk~e~e 19 (101)
T 3u1c_A 9 KKMQMLKLDKE 19 (101)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 93
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=92.22 E-value=0.039 Score=58.16 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=18.2
Q ss_pred cccccccc--cccccccccccccc
Q psy11935 870 LFLSELSG--NVIDLCPVGALTSK 891 (1334)
Q Consensus 870 ~~~~~~cg--~cv~~CpvGAl~~k 891 (1334)
+..|..|| .|+.+||+|||...
T Consensus 55 ~~~C~~C~~p~C~~~CP~gAi~~~ 78 (195)
T 2vpz_B 55 PEQCLHCENPPCVPVCPTGASYQT 78 (195)
T ss_dssp EEECCCCSSCTTTTTCSSSCEEEC
T ss_pred cccCcCccCcHHHHhcCCCceecc
Confidence 34689999 59999999999654
No 94
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=92.13 E-value=0.044 Score=48.78 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=17.4
Q ss_pred ccccccccccccccccccc
Q psy11935 872 LSELSGNVIDLCPVGALTS 890 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~ 890 (1334)
.|+.||.|+++||+|||..
T Consensus 7 ~C~~C~~C~~~CP~~ai~~ 25 (82)
T 2fgo_A 7 DCINCDVCEPECPNGAISQ 25 (82)
T ss_dssp TCCCCCTTGGGCTTCCEEE
T ss_pred CCCChhhHHHHCChhccCC
Confidence 5999999999999999964
No 95
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}
Probab=92.06 E-value=0.056 Score=48.53 Aligned_cols=35 Identities=9% Similarity=-0.050 Sum_probs=24.4
Q ss_pred ccccccccccccccccccccCCcccCCCCcceeeeeecccCC
Q psy11935 872 LSELSGNVIDLCPVGALTSKPYSFTARPWETRKTESVDVLDA 913 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~k~~~~~~r~we~~~~~s~c~~C~ 913 (1334)
.|+.||.|+.+||+|||.... ..| ......|.+|+
T Consensus 7 ~C~~C~~C~~~CP~~ai~~~~-----~~~--~~~~~~C~~C~ 41 (85)
T 2zvs_A 7 KCINCDMCEPECPNEAISMGD-----HIY--EINSDKCTECV 41 (85)
T ss_dssp TCCCCCTTTTTCTTCCEECCS-----SSC--EECGGGCCTTT
T ss_pred cCcChhHHHHHCchhccCcCC-----Cce--EEeChhccCCC
Confidence 599999999999999996432 112 22345677665
No 96
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=91.59 E-value=0.061 Score=47.60 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=17.4
Q ss_pred ccccccccccccccccccc
Q psy11935 872 LSELSGNVIDLCPVGALTS 890 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~ 890 (1334)
.|+.||.|+.+||+|||..
T Consensus 7 ~C~~C~~C~~~CP~~ai~~ 25 (80)
T 1rgv_A 7 DCTACDACVEECPNEAITP 25 (80)
T ss_dssp CCCCCCTTTTTCTTCCEEC
T ss_pred CCcChhhHHHHcChhccCc
Confidence 5999999999999999964
No 97
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=91.53 E-value=0.037 Score=63.50 Aligned_cols=23 Identities=13% Similarity=-0.132 Sum_probs=19.2
Q ss_pred cccccccc---------ccccccccccccccC
Q psy11935 870 LFLSELSG---------NVIDLCPVGALTSKP 892 (1334)
Q Consensus 870 ~~~~~~cg---------~cv~~CpvGAl~~k~ 892 (1334)
...|++|+ .|+.+||+|||+..+
T Consensus 208 ~~kC~~C~~r~~~g~~paCv~~CP~~Ai~~g~ 239 (352)
T 2ivf_B 208 SEKCILCYPRIEKGIANACNRQCPGRVRAFGY 239 (352)
T ss_dssp EEECCTTHHHHTTTBCCHHHHTCTTCCEEEEE
T ss_pred ccccCCCcchhhcCCCChHHHhcCccceeccc
Confidence 44699996 999999999996644
No 98
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A
Probab=91.41 E-value=0.065 Score=47.72 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=17.3
Q ss_pred ccccccccccccccccccc
Q psy11935 872 LSELSGNVIDLCPVGALTS 890 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~ 890 (1334)
.|+.||.|+++||+|||..
T Consensus 7 ~C~~C~~C~~~CP~~ai~~ 25 (82)
T 3eun_A 7 ECINCDVCEPECPNGAISQ 25 (82)
T ss_dssp TCCCCCTTGGGCTTCCEEE
T ss_pred CCcCccchHHHCChhheEc
Confidence 5899999999999999954
No 99
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=91.28 E-value=0.07 Score=59.29 Aligned_cols=32 Identities=13% Similarity=0.207 Sum_probs=24.2
Q ss_pred ccccccccccccccccccccCCcccCCCCcceeeeeecccC
Q psy11935 872 LSELSGNVIDLCPVGALTSKPYSFTARPWETRKTESVDVLD 912 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~k~~~~~~r~we~~~~~s~c~~C 912 (1334)
.|+.||.|+.+||.|||...+. .....-|.+|
T Consensus 98 ~CigC~~C~~~CP~~Ai~~~~~---------~~~~~kC~~C 129 (274)
T 1ti6_B 98 KAKGKKELLDTCPYGVMYWNEE---------ENVAQKCTMC 129 (274)
T ss_dssp TTTTCGGGGGGCSSCCCEEETT---------TTEEECCCTT
T ss_pred hccchHHHHhhCccCCeEEEcc---------cCccccCCCc
Confidence 6999999999999999964421 1245668877
No 100
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=91.23 E-value=0.088 Score=42.70 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=17.7
Q ss_pred cccccccccccccccccccc
Q psy11935 872 LSELSGNVIDLCPVGALTSK 891 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~k 891 (1334)
.|+.||.|+++||+|||...
T Consensus 7 ~C~~C~~C~~~CP~~ai~~~ 26 (55)
T 2fdn_A 7 ACISCGACEPECPVNAISSG 26 (55)
T ss_dssp TCCCCCTTGGGCTTCCEECC
T ss_pred cCcChhhHHHHCCccccCcC
Confidence 58999999999999999644
No 101
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=91.07 E-value=0.22 Score=46.04 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=20.7
Q ss_pred cEEEEECC--EEEEeCCCCcchhhhh
Q psy11935 664 KFEVFIDD--KKVMVDPGTTVLQPVA 687 (1334)
Q Consensus 664 ~~~~~idg--~~~~v~~g~til~~~~ 687 (1334)
.|+|+++| ++|.|++|+|||+...
T Consensus 4 ~v~~~~~~~~~~~~~~~g~tlL~a~~ 29 (98)
T 1iue_A 4 NITLRTNDGEKKIECNEDEYILDASE 29 (98)
T ss_dssp EEEEEETTEEEEEEEETTSCHHHHHH
T ss_pred EEEEEeCCCeEEEEeCCCCcHHHHHH
Confidence 58888888 8999999999999543
No 102
>3nvw_A Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, guanine, oxidoredu; HET: FAD MTE GUN; 1.60A {Bos taurus} PDB: 3etr_A* 3ns1_A* 3nvv_A* 3nrz_A* 3nvy_A* 3nvz_A* 3rca_A* 3sr6_A* 3eub_A*
Probab=90.93 E-value=0.09 Score=53.06 Aligned_cols=64 Identities=31% Similarity=0.514 Sum_probs=46.2
Q ss_pred CCcEEEEECCEEE---EeCCCCcchh----------------------------------------hhhhhcCCC--CCC
Q psy11935 662 NEKFEVFIDDKKV---MVDPGTTVLQ----------------------------------------PVAACAMPV--MKG 696 (1334)
Q Consensus 662 ~~~~~~~idg~~~---~v~~g~til~----------------------------------------~~~ac~~~~--~~g 696 (1334)
.++++++|||+++ .|+|++|+|+ ++.||.+|+ .+|
T Consensus 2 ~~~i~~~vNG~~~~~~~~~p~~~Ll~~LR~~lgltGtK~GC~~G~CGACTVlvd~~~~~~~~~~g~~v~SCl~~a~~~~G 81 (164)
T 3nvw_A 2 ADELVFFVNGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDRLQDKIIHFSANACLAPICTLHH 81 (164)
T ss_dssp CCCEEEEETTEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCSSSSSCTTEEEEEEEETTTTEEEEEEEETTTCBGGGCTT
T ss_pred CceEEEEECCEEEEEecCCCCCCHHHHHHHHcCCCCcCCCcCCCCCCCCEEEEccccccccccCCcEEehhhhhHHHhCC
Confidence 3679999999986 4889999999 477999988 489
Q ss_pred CEEEcC----C--HHHHHHHHHHHHHHHHhCCCCCCCCC
Q psy11935 697 WRVKTN----S--EMTRRAREGVMEFLLVNHPLDCPICD 729 (1334)
Q Consensus 697 m~v~t~----s--~~~~~~r~~~~~~ll~~hp~~C~~c~ 729 (1334)
..|.|= + ... ..|.+-+...|-.-|..|-
T Consensus 82 ~~I~TiEGL~~~~~~l----hpvQ~af~~~~~~QCGfCt 116 (164)
T 3nvw_A 82 VAVTTVEGIGSTKTRL----HPVQERIAKSHGSQCGFCT 116 (164)
T ss_dssp CEEECGGGTCCTTSCC----CHHHHHHHHTTCCSSCTTH
T ss_pred cceEEecccCCCCCcc----CHHHHHHHHcCCCcCccch
Confidence 999982 1 111 2344455667777785554
No 103
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=90.69 E-value=8.4 Score=34.01 Aligned_cols=49 Identities=8% Similarity=0.127 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 174 KAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESV 222 (1334)
Q Consensus 174 ~~~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 222 (1334)
...+.+-.+.++..+.++.+..++++++..+..++-+..-.++.++..+
T Consensus 54 Tr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~ 102 (114)
T 2xzr_A 54 TRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARI 102 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3444444555555555555555666666666555555555555544444
No 104
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=90.52 E-value=0.11 Score=58.58 Aligned_cols=42 Identities=12% Similarity=0.029 Sum_probs=26.5
Q ss_pred cccccc--cccccccc-ccccccCCcccCCCCcceeeeeecccC---CCCCceE
Q psy11935 872 LSELSG--NVIDLCPV-GALTSKPYSFTARPWETRKTESVDVLD---AVGSNII 919 (1334)
Q Consensus 872 ~~~~cg--~cv~~Cpv-GAl~~k~~~~~~r~we~~~~~s~c~~C---~~gC~i~ 919 (1334)
.|..|| .|+.+||+ |||..... ......+..|..| ...|+..
T Consensus 99 ~C~~C~~~~C~~~CP~~gAi~~~~~------g~v~id~~~CigCg~C~~~CP~~ 146 (294)
T 1kqf_B 99 GCMHCEDPGCLKACPSAGAIIQYAN------GIVDFQSENCIGCGYCIAGCPFN 146 (294)
T ss_dssp SCCCBSSCHHHHHCCSTTSEEEETT------SCEEECGGGCCCCCHHHHHCTTC
T ss_pred cCCCcCChhhhhhCCccCccccccc------cceEeCcccCCCcchhhhcCCCC
Confidence 589999 69999999 99964321 1122333455554 4577653
No 105
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=90.35 E-value=0.25 Score=46.99 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=15.2
Q ss_pred CCEEEEeCCCCcchhhh
Q psy11935 670 DDKKVMVDPGTTVLQPV 686 (1334)
Q Consensus 670 dg~~~~v~~g~til~~~ 686 (1334)
+|++|+|++|+|||+..
T Consensus 15 ~~~~v~~~~g~tlL~aa 31 (113)
T 3ah7_A 15 EGLTVEVKPGTNILELA 31 (113)
T ss_dssp TCEEEECCTTCBHHHHH
T ss_pred CCeEEEECCCCcHHHHH
Confidence 57999999999999954
No 106
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=90.17 E-value=11 Score=34.98 Aligned_cols=81 Identities=16% Similarity=0.163 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHH-HHHHHHHHH
Q psy11935 422 ESLERNLQTETQRSRKLEEELQDTRQTCE-EVVRKEVSIVTVTLFLERLRSSHSKRSKNADSLVRLQKAQ-DEIQTLLAK 499 (1334)
Q Consensus 422 ~~l~~~~~~l~~~~~~l~~~l~~~~~~~~-e~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~-~~l~~l~~~ 499 (1334)
..|......+..+++..+.++.....+.. .+..+..++..+......+...+..++..-+.++...... ..+++++.+
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k 85 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQR 85 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHH
Confidence 34445555555555555555555544444 5556666666666666666666666666666665554433 444455444
Q ss_pred HHH
Q psy11935 500 SAS 502 (1334)
Q Consensus 500 ~~~ 502 (1334)
++.
T Consensus 86 ~n~ 88 (111)
T 2v66_B 86 LNQ 88 (111)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 107
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=89.67 E-value=0.051 Score=63.19 Aligned_cols=14 Identities=29% Similarity=0.470 Sum_probs=9.7
Q ss_pred CHHHHHHHHHHHhc
Q psy11935 975 EWEDALIAVAQKLQ 988 (1334)
Q Consensus 975 SWdeAl~~ia~~L~ 988 (1334)
.|+|+++.+-..+.
T Consensus 295 ~~~ev~~~v~~i~~ 308 (366)
T 3mm5_B 295 RWPTLVKYVKQILE 308 (366)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 58888877765554
No 108
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=89.64 E-value=1.2 Score=44.25 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=8.7
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy11935 59 TQLNNNQKAQDEIQTLLAKSASIKTE 84 (1334)
Q Consensus 59 ~~~~~~~~l~~~i~~l~~~~~~~~~~ 84 (1334)
-+..++++.+.++.....++......
T Consensus 7 llEeeLer~eerl~~a~~kLeeaek~ 32 (147)
T 2b9c_A 7 LVEEELDRAQERLATALQKLEEAEKA 32 (147)
T ss_dssp ----CCGGGGTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444443333333
No 109
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=89.51 E-value=6.6 Score=36.21 Aligned_cols=29 Identities=17% Similarity=0.223 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 180 YEAENKKLKAELTQRDIKLKETNHLLKEE 208 (1334)
Q Consensus 180 l~~~l~~~~~~l~~~~~~l~~l~~~~~~~ 208 (1334)
+..++..+..+++.++.++.....++...
T Consensus 49 L~kKiq~lE~eld~~~e~l~~a~~kLe~~ 77 (101)
T 3u59_A 49 LQKKLKGTEDEVEKYSESVKEAQEKLEQA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 110
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=89.50 E-value=0.1 Score=61.93 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=17.8
Q ss_pred cccccccccccccccccccc
Q psy11935 872 LSELSGNVIDLCPVGALTSK 891 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~k 891 (1334)
.|+.||.|+++||+|||...
T Consensus 34 kCi~Cg~C~~~CP~~ai~~~ 53 (421)
T 1hfe_L 34 KCIGCDTCSQYCPTAAIFGE 53 (421)
T ss_dssp TCCCCCHHHHHCTTCCCBCC
T ss_pred cCCCccHHHHhcCcCceecc
Confidence 59999999999999999643
No 111
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*
Probab=89.41 E-value=0.051 Score=47.91 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=18.2
Q ss_pred ccccccccccccccccccccC
Q psy11935 872 LSELSGNVIDLCPVGALTSKP 892 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~k~ 892 (1334)
.|+.||.|+.+||++||...+
T Consensus 9 ~C~~Cg~C~~~CP~~a~~~~~ 29 (80)
T 1jb0_C 9 TCIGCTQCVRACPTDVLEMVP 29 (80)
T ss_dssp TCCCCCHHHHHCTTCCCEEEE
T ss_pred cCcChhHHHHHCCcccccccc
Confidence 599999999999999996543
No 112
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5
Probab=89.34 E-value=0.11 Score=55.58 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=17.8
Q ss_pred ccc--ccccccccccccccccc
Q psy11935 872 LSE--LSGNVIDLCPVGALTSK 891 (1334)
Q Consensus 872 ~~~--~cg~cv~~CpvGAl~~k 891 (1334)
.|+ .||.|+++||+|||...
T Consensus 107 ~C~~~~C~~C~~~CP~~Ai~~~ 128 (214)
T 1h0h_B 107 TKDLEDYESVISACPYDVPRKV 128 (214)
T ss_dssp GGGCSCHHHHHHHCTTCCCEEC
T ss_pred HCccccccHHHHhcCCCCeEec
Confidence 589 99999999999999644
No 113
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=89.30 E-value=1.7 Score=44.33 Aligned_cols=116 Identities=16% Similarity=0.086 Sum_probs=65.4
Q ss_pred HHHHHHHhcc-CCEEEEeCCcC-CHHHHHHHHHHHHHhCCCccccCCC---CCc-ch--hh--hhhhhhccCCCCc---c
Q psy11935 980 LIAVAQKLQT-SEVAGVVGSLA-DAEAMVALKDLLNKLGSEDLYTEYA---FPL-EG--AG--TDLRANYLLNNKI---A 1046 (1334)
Q Consensus 980 l~~ia~~L~~-~~i~~~~g~~~-~~e~~~~~~~l~~~lGs~~~~~~~~---~~~-~~--~~--~~~~~~~~~~~~~---~ 1046 (1334)
++.+++.|++ .+..+++|+.. .......+.+|++++|.+.+.+..+ ++. .+ .. .+....++..... .
T Consensus 24 v~~aa~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~iPV~~t~~gkg~~~~~hp~~~~~~~G~~G~~~~~~~~~~~~ 103 (170)
T 3cf4_G 24 PEMAAKIISKAKRPLLMVGTLALDPELLDRVVKISKAANIPIAATGSSLAVLADKDVDAKYINAHMLGFYLTDPKWPGLD 103 (170)
T ss_dssp HHHHHHHHHHCSSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEECTTTHHHHTTSSSCEEECCHHHHHHHTTCTTCCCSS
T ss_pred HHHHHHHHHcCCCCEEEECCCccchhHHHHHHHHHHHhCCCEEECcccCcccCCCChhhhcceeeeccccCChhhhhHHH
Confidence 5566666666 67777777654 4555667889999999987654321 110 11 11 1111111212222 4
Q ss_pred cccccCeEEEEcCCc--cccchhHHHHHHHHHhhCCCeEEEEccCCCCccccccCCC
Q psy11935 1047 GAEEADLILLIGTNP--RFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGE 1101 (1334)
Q Consensus 1047 die~ad~Il~~G~np--~~~~p~~~~rir~a~~~~g~kiivIdp~~~~t~~~a~~Gt 1101 (1334)
-+++||+||++|+++ ....+..+. .+ .. .++|.|+..+........++-
T Consensus 104 ~~~~aDlvl~iG~~~~~~~~~t~~~~----~~-~~-~~iI~i~~~~~~~~~~~~~~l 154 (170)
T 3cf4_G 104 GNGNYDMIITIGFKKFYINQVLSAAK----NF-SN-LKTIAIERGYIQNATMSFGNL 154 (170)
T ss_dssp SSCCCSEEEEESCCHHHHHHHHHHHH----HH-CC-CCEEECSSSCCTTSSEECCCC
T ss_pred HhhcCCEEEEECCccCcccccccccc----cc-CC-CeEEEECCCcccchhhhhccC
Confidence 579999999999987 443332111 11 13 689988887655444333433
No 114
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=88.87 E-value=0.38 Score=63.40 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=22.6
Q ss_pred CCcEEEEECCEEEEeCCCCcchhhhh
Q psy11935 662 NEKFEVFIDDKKVMVDPGTTVLQPVA 687 (1334)
Q Consensus 662 ~~~~~~~idg~~~~v~~g~til~~~~ 687 (1334)
+.+|+|+|||+++++.+|.||....-
T Consensus 20 ~~~~~~~~dG~~~~~~~g~tv~~aL~ 45 (965)
T 2gag_A 20 EEALSLTVDGAKLSAFRGDTVASALL 45 (965)
T ss_dssp EEEEEEEETTEEEEEEETCBHHHHHH
T ss_pred CCeEEEEECCEEEEecCCCHHHHHHH
Confidence 45899999999999999999988443
No 115
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*
Probab=88.84 E-value=0.11 Score=62.40 Aligned_cols=21 Identities=5% Similarity=-0.263 Sum_probs=18.1
Q ss_pred cccccccc---------ccccccccccccc
Q psy11935 870 LFLSELSG---------NVIDLCPVGALTS 890 (1334)
Q Consensus 870 ~~~~~~cg---------~cv~~CpvGAl~~ 890 (1334)
...|++|| .|+.+||+|||.-
T Consensus 241 ~~kC~~Cg~ri~~G~~P~Cv~~CP~~Ai~~ 270 (512)
T 1q16_B 241 SEKCIFCYPRIEAGQPTVCSETCVGRIRYL 270 (512)
T ss_dssp EEECCTTHHHHTTTCCCHHHHTCTTCCEEE
T ss_pred cccCcCCCchhhcCCCCceEeeCchhhhhc
Confidence 44699999 9999999999943
No 116
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=88.83 E-value=6.3 Score=46.00 Aligned_cols=15 Identities=13% Similarity=0.087 Sum_probs=0.0
Q ss_pred cccccccCCCCcccc
Q psy11935 375 LEAEVKDSAGPMTSF 389 (1334)
Q Consensus 375 LdGdvin~GGSiTGG 389 (1334)
-+|+.+.-||++-|=
T Consensus 4 ~~~~f~~~gg~~RGp 18 (562)
T 3ghg_A 4 GEGDFLAEGGGVRGP 18 (562)
T ss_dssp ---------------
T ss_pred CCCceeecCCCcCCC
Confidence 356666666655543
No 117
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=88.83 E-value=0.12 Score=54.47 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=14.9
Q ss_pred ccccccccccccccccccccC
Q psy11935 872 LSELSGNVIDLCPVGALTSKP 892 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~k~ 892 (1334)
.|+.||.|+.+||+|||...+
T Consensus 89 ~CigC~~C~~~CP~~Ai~~~~ 109 (195)
T 2vpz_B 89 KCIACGACIAACPYDARYLHP 109 (195)
T ss_dssp TCCCCCHHHHHCTTCCCEECT
T ss_pred CCCCcChhHhhCCCCCeEECC
Confidence 477777777777777775543
No 118
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=88.74 E-value=0.13 Score=44.95 Aligned_cols=19 Identities=16% Similarity=0.457 Sum_probs=16.9
Q ss_pred cccc--ccccccccccccccc
Q psy11935 872 LSEL--SGNVIDLCPVGALTS 890 (1334)
Q Consensus 872 ~~~~--cg~cv~~CpvGAl~~ 890 (1334)
.|+. ||.|+.+||+|||..
T Consensus 7 ~C~~c~C~~C~~~Cp~~ai~~ 27 (77)
T 1bc6_A 7 PCIGTKDASCVEVCPVDCIHE 27 (77)
T ss_dssp TTTTCCCCSSTTTCTTCCEEE
T ss_pred cCCCCCcchhHHhcccccEEe
Confidence 5888 999999999999964
No 119
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=88.56 E-value=0.33 Score=44.41 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=18.4
Q ss_pred cEEEE-ECC-EEEEeCCCCcchhhh
Q psy11935 664 KFEVF-IDD-KKVMVDPGTTVLQPV 686 (1334)
Q Consensus 664 ~~~~~-idg-~~~~v~~g~til~~~ 686 (1334)
.|+|+ .|| ++|+|++|+|||+..
T Consensus 2 ~v~~~~~~g~~~~~~~~g~tlL~a~ 26 (94)
T 1awd_A 2 KVTLKTPSGEETIECPEDTYILDAA 26 (94)
T ss_dssp EEEEEETTEEEEEECCTTSCHHHHH
T ss_pred EEEEEeCCCcEEEEECCCCcHHHHH
Confidence 36676 466 899999999999954
No 120
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=88.27 E-value=0.15 Score=52.81 Aligned_cols=21 Identities=14% Similarity=0.017 Sum_probs=18.2
Q ss_pred ccccccccccccccccccccc
Q psy11935 871 FLSELSGNVIDLCPVGALTSK 891 (1334)
Q Consensus 871 ~~~~~cg~cv~~CpvGAl~~k 891 (1334)
-.|+.||.|+.+||++|+...
T Consensus 51 ~~Ci~C~~C~~~CP~~ai~~~ 71 (182)
T 3i9v_9 51 EKCIGCSLCAAACPAYAIYVE 71 (182)
T ss_dssp BSCCCCCHHHHHCTTCCEEEE
T ss_pred ccCcccccchhhCCcccEEee
Confidence 369999999999999999543
No 121
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=88.08 E-value=9 Score=43.05 Aligned_cols=12 Identities=25% Similarity=0.340 Sum_probs=7.7
Q ss_pred cccccccccccccc
Q psy11935 261 STTDTNCPVTQQYV 274 (1334)
Q Consensus 261 G~Vaeli~Vp~~Y~ 274 (1334)
+.+-++ ||..|-
T Consensus 211 ~p~kd~--vP~~fK 222 (390)
T 1deq_A 211 STITGP--VPREFK 222 (390)
T ss_pred cccccc--CChhhc
Confidence 455555 777776
No 122
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=88.03 E-value=0.091 Score=48.92 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=17.7
Q ss_pred cccccccccccccccccccc
Q psy11935 872 LSELSGNVIDLCPVGALTSK 891 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~k 891 (1334)
.|+.||.|+.+||++||...
T Consensus 44 ~C~~Cg~C~~~CP~~ai~~~ 63 (103)
T 1xer_A 44 LCIADGSCINACPVNVFQWY 63 (103)
T ss_dssp TCCCCCHHHHHCTTCCCEEE
T ss_pred hCCChhhHHHHcCccCeecc
Confidence 59999999999999999643
No 123
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=87.81 E-value=3.5 Score=40.38 Aligned_cols=47 Identities=23% Similarity=0.225 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 176 KCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESV 222 (1334)
Q Consensus 176 ~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 222 (1334)
+++++..++..+..++..++.+++.+.+++.++++++..++.++..+
T Consensus 83 ~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 83 DIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334444444444444444343333333333
No 124
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5
Probab=87.56 E-value=0.14 Score=54.79 Aligned_cols=22 Identities=5% Similarity=-0.224 Sum_probs=18.8
Q ss_pred ccccccccc--cccccc---ccccccc
Q psy11935 870 LFLSELSGN--VIDLCP---VGALTSK 891 (1334)
Q Consensus 870 ~~~~~~cg~--cv~~Cp---vGAl~~k 891 (1334)
+..|..||+ |+.+|| +|||...
T Consensus 69 ~~~C~~C~~p~C~~~CP~~~~gAi~~~ 95 (214)
T 1h0h_B 69 PDQCRHCIAPPCKATADMEDESAIIHD 95 (214)
T ss_dssp EECCCCCSSCHHHHHHTTTCTTSEEEC
T ss_pred CCcCcCcCCchhhccCCccccccEEec
Confidence 446999998 999999 9999654
No 125
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=87.49 E-value=4.4 Score=37.26 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=23.1
Q ss_pred hhHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11935 403 ALYTKTVRSVTLKISKEKIESLERNLQTETQRSRKLEEELQDTRQTCEEVVRKEVS 458 (1334)
Q Consensus 403 ~ei~~L~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~e~~~~~~~ 458 (1334)
-+++.|...+ ...++.+.....+++++++++...++.+..+.-++.+
T Consensus 24 ~ei~~L~~~L---------~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQ 70 (110)
T 2v4h_A 24 MQLEDLRQQL---------QQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQ 70 (110)
T ss_dssp CHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666555 4444445555555555555554444444333333333
No 126
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=87.49 E-value=19 Score=33.74 Aligned_cols=40 Identities=8% Similarity=0.092 Sum_probs=18.7
Q ss_pred hHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 404 LYTKTVRSVTLKISKEKIESLERNLQTETQRSRKLEEELQDT 445 (1334)
Q Consensus 404 ei~~L~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 445 (1334)
.+.+|+..+ ..++.++...+.++.-.-+-+.+-+.+.+.+
T Consensus 12 ~ia~L~~D~--~s~~~eleEnqeEL~iVgkML~EEqgKVDQl 51 (167)
T 4gkw_A 12 EVADLKQDT--ESLQKQLEENQEELEIVGNMLREEQGKVDQL 51 (167)
T ss_dssp SHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 345555555 5555554444444444444344444444433
No 127
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=87.11 E-value=11 Score=36.27 Aligned_cols=32 Identities=13% Similarity=0.170 Sum_probs=13.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy11935 54 REFYQTQLNNNQKAQDEIQTLLAKSASIKTEL 85 (1334)
Q Consensus 54 ~er~~~~~~~~~~l~~~i~~l~~~~~~~~~~l 85 (1334)
++.+..++..++.|+-++..+......++..+
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l 66 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAI 66 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33334444444444444444444444444444
No 128
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=87.03 E-value=5.9 Score=36.43 Aligned_cols=30 Identities=20% Similarity=0.317 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 421 IESLERNLQTETQRSRKLEEELQDTRQTCE 450 (1334)
Q Consensus 421 ~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~ 450 (1334)
+..|..++...++.+.....+++.+++++.
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~ 55 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEAE 55 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666655555444
No 129
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2
Probab=86.85 E-value=0.15 Score=44.85 Aligned_cols=20 Identities=15% Similarity=0.355 Sum_probs=17.4
Q ss_pred cccc--cccccccccccccccc
Q psy11935 872 LSEL--SGNVIDLCPVGALTSK 891 (1334)
Q Consensus 872 ~~~~--cg~cv~~CpvGAl~~k 891 (1334)
.|+. ||.|+++||+|||...
T Consensus 7 ~C~~c~C~~C~~~CP~~ai~~~ 28 (78)
T 1h98_A 7 PCIGVKDQSCVEVCPVECIYDG 28 (78)
T ss_dssp GGTTTCCCHHHHHCTTCCEEEC
T ss_pred hCCCCCcChhhhhcCccceEcC
Confidence 5888 9999999999999653
No 130
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=86.79 E-value=8.8 Score=35.75 Aligned_cols=67 Identities=10% Similarity=0.040 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh---HHHHHHHHHhhhHHHHHHHHHHHHH
Q psy11935 8 QTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE---LREFYQTQLNNNQKAQDEIQTLLAK 77 (1334)
Q Consensus 8 ~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~---~~er~~~~~~~~~~l~~~i~~l~~~ 77 (1334)
..+.+.++....+++.+|.++......+.+. +..+.+..+.+ +.+++.+....+..+++.....+..
T Consensus 5 ~~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~---w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~ 74 (112)
T 1x79_B 5 RDQVKKLQLMLRQANDQLEKTMKDKQELEDF---IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRD 74 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555444 22333333333 5555555555555555555555544
No 131
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=86.60 E-value=14 Score=35.76 Aligned_cols=93 Identities=13% Similarity=0.147 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 53 LREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQLNNNVKE----KLKEFQTQLDSAELTLHREFQQKEKTIVE 128 (1334)
Q Consensus 53 ~~er~~~~~~~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~l~~~~~~~~~~i~~ 128 (1334)
..+.+...+.++.+++..+..+..+++.+......+ +..+.+ .+. .+..++..+..++..+. ....++..
T Consensus 27 ~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~L-E~~l~e-~e~~~~~~l~~~q~~i~~lE~eL~----~~r~e~~~ 100 (129)
T 3tnu_B 27 HGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANL-QNAIAD-AEQRGELALKDARNKLAELEEALQ----KAKQDMAR 100 (129)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHH
Confidence 334444555555555555555555555555544444 444444 333 22233333333333332 22333444
Q ss_pred HHHHHHHHHHHhHhhhhhHHHHH
Q psy11935 129 NAAKQLKQISENEFKQKEKTIVE 151 (1334)
Q Consensus 129 ~~~~~ie~~~~~~~l~n~~~~~~ 151 (1334)
...+|-++|+-+..|..++..+.
T Consensus 101 ql~EYq~LlnvKl~Ld~EIatYR 123 (129)
T 3tnu_B 101 LLREYQELMNTKLALDVEIATYR 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666555555555544
No 132
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=86.59 E-value=9.1 Score=37.11 Aligned_cols=18 Identities=6% Similarity=-0.045 Sum_probs=8.0
Q ss_pred HHHHHhHhhhhhHHHHHH
Q psy11935 135 KQISENEFKQKEKTIVEN 152 (1334)
Q Consensus 135 e~~~~~~~l~n~~~~~~~ 152 (1334)
++++-+..|..++..+.+
T Consensus 109 ~Ll~vKl~Ld~EIatYRk 126 (131)
T 3tnu_A 109 ILLDVKTRLEQEIATYRR 126 (131)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 133
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=86.17 E-value=0.17 Score=56.81 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=10.2
Q ss_pred cccccccccccccccccc
Q psy11935 872 LSELSGNVIDLCPVGALT 889 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~ 889 (1334)
.|+.||.|+.+||+||+.
T Consensus 132 ~CigCg~C~~~CP~~ai~ 149 (294)
T 1kqf_B 132 NCIGCGYCIAGCPFNIPR 149 (294)
T ss_dssp GCCCCCHHHHHCTTCCCE
T ss_pred cCCCcchhhhcCCCCCcE
Confidence 355555555555555554
No 134
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=86.01 E-value=0.17 Score=47.42 Aligned_cols=20 Identities=15% Similarity=0.391 Sum_probs=17.7
Q ss_pred cccccc--cccccccccccccc
Q psy11935 872 LSELSG--NVIDLCPVGALTSK 891 (1334)
Q Consensus 872 ~~~~cg--~cv~~CpvGAl~~k 891 (1334)
.|+.|| .|+++||+|||...
T Consensus 7 ~C~~C~~~~C~~~CP~~ai~~~ 28 (106)
T 7fd1_A 7 NCIKCKYTDCVEVCPVDCFYEG 28 (106)
T ss_dssp GGTTTCCCHHHHHCTTCCEEEC
T ss_pred ccCCccCcHHHHHcCccceEcC
Confidence 599999 99999999999654
No 135
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=85.81 E-value=12 Score=34.91 Aligned_cols=42 Identities=19% Similarity=0.179 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy11935 10 LLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKT 51 (1334)
Q Consensus 10 ~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~ 51 (1334)
.+..++..+.+++.++..+......++.++..+...+..++.
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344555566666666777777777777777777777777664
No 136
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=85.77 E-value=9.9 Score=36.85 Aligned_cols=14 Identities=29% Similarity=0.302 Sum_probs=5.1
Q ss_pred hhHHHHHHHHHHHH
Q psy11935 63 NNQKAQDEIQTLLA 76 (1334)
Q Consensus 63 ~~~~l~~~i~~l~~ 76 (1334)
.++.|+-++..+..
T Consensus 46 ~iq~L~~el~~l~~ 59 (131)
T 3tnu_A 46 TMQNLEIELQSQLS 59 (131)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 33333333333333
No 137
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=85.59 E-value=13 Score=33.80 Aligned_cols=14 Identities=14% Similarity=0.311 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q psy11935 209 SKKRELMAKKVESV 222 (1334)
Q Consensus 209 ~~~~~~~~~~~~~~ 222 (1334)
..++-+.++++.++
T Consensus 66 ~~ql~e~~dE~~Sl 79 (96)
T 3q8t_A 66 KRQQLELDDELKSV 79 (96)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 138
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=85.44 E-value=5 Score=39.23 Aligned_cols=59 Identities=10% Similarity=0.189 Sum_probs=25.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy11935 54 REFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQLDSAELT 114 (1334)
Q Consensus 54 ~er~~~~~~~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 114 (1334)
++++..+...++.+.+++.+++.++.....++..+ .+++.+ ++.++.+++.++..++.+
T Consensus 74 ~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~-~~e~~~-l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 74 KKMADSLSLDIENKDKEIYDLKHELIAAQIKAESS-AKEIKE-LKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444 344444 444444444444444433
No 139
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=85.11 E-value=16 Score=34.46 Aligned_cols=79 Identities=11% Similarity=0.086 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh------------------HHHHHHHHHhhhHHHHHHH
Q psy11935 10 LLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE------------------LREFYQTQLNNNQKAQDEI 71 (1334)
Q Consensus 10 ~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~------------------~~er~~~~~~~~~~l~~~i 71 (1334)
+....-.++..++.++..+..++..++.++.++..-++.++.- ..+-...+..+++.++..+
T Consensus 7 e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i 86 (117)
T 2zqm_A 7 QVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRL 86 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 3445556677777777777777777777777755555544432 5555555566666666655
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11935 72 QTLLAKSASIKTELREF 88 (1334)
Q Consensus 72 ~~l~~~~~~~~~~l~~~ 88 (1334)
+.++.++..+..++..+
T Consensus 87 ~~le~~~~~l~~~l~~l 103 (117)
T 2zqm_A 87 NALERQEKKLNEKLKEL 103 (117)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555555444
No 140
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=84.88 E-value=23 Score=33.56 Aligned_cols=25 Identities=8% Similarity=-0.023 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhHHH
Q psy11935 125 TIVENAAKQLKQISENEFKQKEKTI 149 (1334)
Q Consensus 125 ~i~~~~~~~ie~~~~~~~l~n~~~~ 149 (1334)
.|.+++.++.+...+.+.+..++..
T Consensus 21 ~I~~LR~qid~~~~e~a~l~leldn 45 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARVEVERDN 45 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333343333333333333333333
No 141
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=84.81 E-value=0.16 Score=59.50 Aligned_cols=14 Identities=0% Similarity=0.057 Sum_probs=9.5
Q ss_pred CHHHHHHHHHHHhc
Q psy11935 975 EWEDALIAVAQKLQ 988 (1334)
Q Consensus 975 SWdeAl~~ia~~L~ 988 (1334)
+||+.++.+-..+.
T Consensus 337 p~eei~~~ie~i~~ 350 (418)
T 3mm5_A 337 PYDEIKEILEAIWD 350 (418)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 48888877765554
No 142
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=84.48 E-value=9.4 Score=33.32 Aligned_cols=43 Identities=9% Similarity=0.194 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 580 EAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVM 622 (1334)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~ 622 (1334)
...+..+..+.+++....+.+......+++++......+..+.
T Consensus 33 KekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 33 KEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444444444444443
No 143
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=84.10 E-value=0.36 Score=53.51 Aligned_cols=21 Identities=5% Similarity=-0.105 Sum_probs=18.1
Q ss_pred ccccccc----------c---ccccccccccccc
Q psy11935 870 LFLSELS----------G---NVIDLCPVGALTS 890 (1334)
Q Consensus 870 ~~~~~~c----------g---~cv~~CpvGAl~~ 890 (1334)
...|.+| | .|+++||+|||+-
T Consensus 123 ~~kC~~C~~r~~~~~~~G~~P~Cv~~CP~~Ai~~ 156 (274)
T 1ti6_B 123 AQKCTMCAHLLDDESWAPKMPRCAHNCGSFVYEF 156 (274)
T ss_dssp EECCCTTHHHHTCTTCTTCSCHHHHHCSSCCEEE
T ss_pred cccCCCchhhhhhhccCCCCcchhhhCCcCceEE
Confidence 4469999 9 9999999999953
No 144
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=84.01 E-value=25 Score=39.51 Aligned_cols=38 Identities=11% Similarity=0.031 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy11935 104 FQTQLDSAELTLHREFQQKEKTIVENAAKQLKQISENE 141 (1334)
Q Consensus 104 ~~~~l~~~~~~l~~~~~~~~~~i~~~~~~~ie~~~~~~ 141 (1334)
.+++..+.+..+.+...+++..|.-++..+.+.+..+.
T Consensus 100 ~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir 137 (390)
T 1deq_A 100 DFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRIN 137 (390)
T ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33333333333333334444444444444444444333
No 145
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=83.91 E-value=1.9 Score=40.57 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=15.1
Q ss_pred CCEEEEeCCCCcchhhh
Q psy11935 670 DDKKVMVDPGTTVLQPV 686 (1334)
Q Consensus 670 dg~~~~v~~g~til~~~ 686 (1334)
+|++|++++|+|||+..
T Consensus 15 ~~~~~~~~~g~tlL~a~ 31 (111)
T 1i7h_A 15 DGAVLEANSGETILDAA 31 (111)
T ss_dssp TCEEEECCTTCBHHHHH
T ss_pred CCeEEEeCCCCcHHHHH
Confidence 57999999999999954
No 146
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.58 E-value=12 Score=45.06 Aligned_cols=16 Identities=0% Similarity=-0.120 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11935 25 YQTQLNNNQKAQDEIQ 40 (1334)
Q Consensus 25 l~~l~~~~~~lq~~i~ 40 (1334)
..++++.++..+....
T Consensus 369 ~~~le~~~~~~~~~~~ 384 (487)
T 3oja_A 369 KKALDEQVSNGRRAHA 384 (487)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3333333333333333
No 147
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=83.18 E-value=15 Score=32.16 Aligned_cols=15 Identities=7% Similarity=0.198 Sum_probs=5.7
Q ss_pred hhHHHHHHHHHHHHH
Q psy11935 63 NNQKAQDEIQTLLAK 77 (1334)
Q Consensus 63 ~~~~l~~~i~~l~~~ 77 (1334)
+.++++++....+++
T Consensus 56 en~qLk~E~~~wq~R 70 (81)
T 2jee_A 56 ENNHLKEQQNGWQER 70 (81)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 148
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=82.93 E-value=0.27 Score=61.11 Aligned_cols=21 Identities=5% Similarity=-0.300 Sum_probs=18.2
Q ss_pred ccccccccccccccccccccc
Q psy11935 871 FLSELSGNVIDLCPVGALTSK 891 (1334)
Q Consensus 871 ~~~~~cg~cv~~CpvGAl~~k 891 (1334)
-.|+.||.|..+||++||+-.
T Consensus 551 ~~Ci~C~~C~~~cp~~~i~~~ 571 (584)
T 2gmh_A 551 QNCVHCKTCDIKDPSQNINWV 571 (584)
T ss_dssp GGCCCCCHHHHHCTTCCEEEC
T ss_pred CCCcCCCCchhhCCCCCceeE
Confidence 369999999999999999444
No 149
>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A
Probab=82.87 E-value=0.29 Score=47.61 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=21.2
Q ss_pred CcEEEEECCE-EEEeCCCCcchhhh
Q psy11935 663 EKFEVFIDDK-KVMVDPGTTVLQPV 686 (1334)
Q Consensus 663 ~~~~~~idg~-~~~v~~g~til~~~ 686 (1334)
.+|+|++||+ +++|++|+|||+..
T Consensus 28 ~~i~i~~~g~~~v~v~~g~tlL~aa 52 (128)
T 1doi_A 28 SDMDLDDEDYGSLEVNEGEYILEAA 52 (128)
T ss_dssp HHSCCCTTTEEEEECCTTSCHHHHH
T ss_pred cEEEEEeCCcEEEEECCCCcHHHHH
Confidence 4578899999 99999999999954
No 150
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=82.71 E-value=33 Score=32.49 Aligned_cols=11 Identities=9% Similarity=0.232 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q psy11935 106 TQLDSAELTLH 116 (1334)
Q Consensus 106 ~~l~~~~~~l~ 116 (1334)
.+++.+.+++.
T Consensus 90 ~~iesL~eEl~ 100 (119)
T 3ol1_A 90 RKVESLQEEIA 100 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 151
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=82.60 E-value=15 Score=33.96 Aligned_cols=76 Identities=12% Similarity=0.078 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh------------------HHHHHHHHHhhhHHHHHHHHHH
Q psy11935 13 KSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE------------------LREFYQTQLNNNQKAQDEIQTL 74 (1334)
Q Consensus 13 ~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~------------------~~er~~~~~~~~~~l~~~i~~l 74 (1334)
..-.++..++.++..+..++..++.++.++..-++.++.- ..+-...+..+++.++.+++.+
T Consensus 5 ~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~l 84 (107)
T 1fxk_A 5 HQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTI 84 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666666666666666666654444444332 5566666666666666666666
Q ss_pred HHHHHHHHHHHHHH
Q psy11935 75 LAKSASIKTELREF 88 (1334)
Q Consensus 75 ~~~~~~~~~~l~~~ 88 (1334)
+.++..+..++..+
T Consensus 85 e~~~~~~~~~l~~l 98 (107)
T 1fxk_A 85 ERQEERVMKKLQEM 98 (107)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66655555555444
No 152
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=82.43 E-value=0.58 Score=47.36 Aligned_cols=53 Identities=21% Similarity=0.347 Sum_probs=36.0
Q ss_pred ceeecCCCcccccccccCC--CCcEEEcCCHHH-HHHHHHHHHHHhhCCCCCCcccc
Q psy11935 781 QSINRHWIGPVAACAMPVM--KGWRVKTNSEMT-RRAREGVMEFLLVNHPLDCPICD 834 (1334)
Q Consensus 781 ~~v~~~~~~~~~aC~~~v~--~gm~i~t~s~~~-r~~r~~~~~~ll~~h~~~C~~C~ 834 (1334)
|.|..++ .|+.||.+++. +||.|.|-..-. .....-+-+.++.+|...|+.|.
T Consensus 50 CtV~vdG-~~v~sC~~~~~~~~G~~I~TiEgL~~~~~l~pvq~a~~~~~~~QCG~Ct 105 (163)
T 1ffv_A 50 CTVDIDG-RSVKSCTHLAVQCDGSEVLTVEGLANKGVLHAVQEGFYKEHGLQCGFCT 105 (163)
T ss_dssp TEEEETT-EEEEGGGSBGGGGTTCEEECGGGTSBTTBCCHHHHHHHHTTCCSSCSSH
T ss_pred CEEEECC-cEecchHhhHHHhCCceEEEECCCCCCCCcCHHHHHHHHhCCccCcccc
Confidence 3444432 68999999998 899999931111 01123466677888999999993
No 153
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=82.33 E-value=1.1 Score=40.99 Aligned_cols=24 Identities=8% Similarity=0.119 Sum_probs=18.8
Q ss_pred cEEEEE-CC-EEEEeCCCCcchhhhh
Q psy11935 664 KFEVFI-DD-KKVMVDPGTTVLQPVA 687 (1334)
Q Consensus 664 ~~~~~i-dg-~~~~v~~g~til~~~~ 687 (1334)
.|+|++ || ++|+|++|+|||+...
T Consensus 4 ~v~~~~~~~~~~~~~~~g~tlL~a~~ 29 (97)
T 1a70_A 4 KVTLVTPTGNVEFQCPDDVYILDAAE 29 (97)
T ss_dssp EEEEEETTEEEEEEEETTSCHHHHHH
T ss_pred EEEEEeCCceEEEEeCCCCcHHHHHH
Confidence 467765 45 8999999999999543
No 154
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=82.10 E-value=0.87 Score=52.18 Aligned_cols=24 Identities=13% Similarity=0.302 Sum_probs=20.0
Q ss_pred CcEEEEEC-----CEEEEeCCCCcchhhh
Q psy11935 663 EKFEVFID-----DKKVMVDPGTTVLQPV 686 (1334)
Q Consensus 663 ~~~~~~id-----g~~~~v~~g~til~~~ 686 (1334)
.|.+|+|+ |++|++++|+|||+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~g~tll~a~ 30 (338)
T 1krh_A 2 SNHQVALQFEDGVTRFICIAQGETLSDAA 30 (338)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCCHHHHH
T ss_pred CceEEEEEEcCCCcEEEEeCCCCcHHHHH
Confidence 46777776 7999999999999954
No 155
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=82.08 E-value=0.7 Score=41.49 Aligned_cols=26 Identities=12% Similarity=0.106 Sum_probs=19.2
Q ss_pred CCCcEEEEECCEEEEeCCC-Ccchhhh
Q psy11935 661 NNEKFEVFIDDKKVMVDPG-TTVLQPV 686 (1334)
Q Consensus 661 ~~~~~~~~idg~~~~v~~g-~til~~~ 686 (1334)
.+.+++|+|||+++++++| .||.++.
T Consensus 17 ~~~~M~I~vNGe~~el~~~~~Tv~dLL 43 (87)
T 1tyg_B 17 IGGRHMLQLNGKDVKWKKDTGTIQDLL 43 (87)
T ss_dssp -----CEEETTEEECCSSSCCBHHHHH
T ss_pred CCcceEEEECCEEEECCCCCCcHHHHH
Confidence 4556789999999999998 9999933
No 156
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Probab=81.83 E-value=0.57 Score=55.93 Aligned_cols=66 Identities=21% Similarity=0.418 Sum_probs=45.9
Q ss_pred cEEEEECCEEEEe---CCCCcchh---------------------------------hhhhhcCCCC--CCCEEEcCCHH
Q psy11935 664 KFEVFIDDKKVMV---DPGTTVLQ---------------------------------PVAACAMPVM--KGWRVKTNSEM 705 (1334)
Q Consensus 664 ~~~~~idg~~~~v---~~g~til~---------------------------------~~~ac~~~~~--~gm~v~t~s~~ 705 (1334)
+++++|||++++| ++++|+|+ ++.||.+|+. +|..|.|=-+-
T Consensus 2 ~~~~~vNg~~~~~~~~~~~~~Ll~~Lr~~~l~g~k~gC~~G~CGaCtV~v~~~~~g~~v~sCl~~~~~~~g~~i~TiEgl 81 (462)
T 2w3s_A 2 EIAFLLNGETRRVRIEDPTQSLLEWLRAEGLTGTKEGCNEGDCGACTVMIRDAAGSRAVNACLMMLPQIAGKALRTIEGI 81 (462)
T ss_dssp EEEEEETTEEEEEECSCTTCBHHHHHHHTTCTTSCCSCSSSSSCTTEEEEEETTEEEEEETTTCBGGGGTTCEEECGGGT
T ss_pred cEEEEECCEEEEEecCCCCCcHHHHHHHcCCCccCCCCCCCCcCCcEEEEEecCCCeEEEchhhhHHHhCCCcEEEECCC
Confidence 5899999999999 59999998 6788999885 59999982111
Q ss_pred HH--HHHHHHHHHHHHhCCCCCCCCC
Q psy11935 706 TR--RAREGVMEFLLVNHPLDCPICD 729 (1334)
Q Consensus 706 ~~--~~r~~~~~~ll~~hp~~C~~c~ 729 (1334)
-. ..-..|.+-+...|-.-|..|-
T Consensus 82 ~~~~~~~~~~q~a~~~~~~~QCG~Ct 107 (462)
T 2w3s_A 82 AAPDGRLHPVQQAMIDHHGSQCGFCT 107 (462)
T ss_dssp SCTTSCCCHHHHHHHHTTCCSSCTTH
T ss_pred CCCCCCCCHHHHHHHHhCCCCCCCCc
Confidence 10 0112344555667777785554
No 157
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=81.34 E-value=9.2 Score=34.19 Aligned_cols=47 Identities=17% Similarity=0.190 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy11935 417 SKEKIESLERNLQTETQRSRKLEEELQDTRQTCEEVVRKEVSIVTVT 463 (1334)
Q Consensus 417 ~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~e~~~~~~~~~~l~ 463 (1334)
+..++...++.+...+..++++++++...+..+..+.-++.+.+-++
T Consensus 7 L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~ 53 (94)
T 3jsv_C 7 LRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYK 53 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555555444444444444444444333
No 158
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=81.18 E-value=0.44 Score=48.36 Aligned_cols=46 Identities=24% Similarity=0.380 Sum_probs=33.6
Q ss_pred cccccccccCC--CCcEEEcCCHHH--HHHHHHHHHHHhhCCCCCCcccc
Q psy11935 789 GPVAACAMPVM--KGWRVKTNSEMT--RRAREGVMEFLLVNHPLDCPICD 834 (1334)
Q Consensus 789 ~~~~aC~~~v~--~gm~i~t~s~~~--r~~r~~~~~~ll~~h~~~C~~C~ 834 (1334)
.|+.||.+++. +||.|.|-..-. .....-+.+.++.+|...|+.|.
T Consensus 57 ~~v~SC~~~~~~~~G~~V~TiEgL~~~~~~~~pvq~a~~~~~~~QCG~Ct 106 (166)
T 1n62_A 57 MSVKSCTMFAVQANGASITTIEGMAAPDGTLSALQEGFRMMHGLQCGYCT 106 (166)
T ss_dssp EEEEGGGSBGGGGTTCEEECGGGSSCTTSCCCHHHHHHHHTTCCSSCSSH
T ss_pred cEEechhhhHHHhCCceEEEeCCCCCcCCccCHHHHHHHHcCCccCCccc
Confidence 68999999995 899999931111 11224466778889999999994
No 159
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=81.13 E-value=16 Score=35.76 Aligned_cols=47 Identities=6% Similarity=-0.096 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 176 KCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESV 222 (1334)
Q Consensus 176 ~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 222 (1334)
.+.+++..+.+....++.++.++..++-++..++.++..++++...+
T Consensus 83 ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 83 EIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334444444444444444444444444333
No 160
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}
Probab=81.00 E-value=0.26 Score=46.06 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=16.7
Q ss_pred ccccc--cccccccccccccc
Q psy11935 872 LSELS--GNVIDLCPVGALTS 890 (1334)
Q Consensus 872 ~~~~c--g~cv~~CpvGAl~~ 890 (1334)
.|+.| |.|+++||+|||..
T Consensus 7 ~C~~C~c~~C~~~CP~~ai~~ 27 (105)
T 2v2k_A 7 PCVDVKDKACIEECPVDCIYE 27 (105)
T ss_dssp GGTTTCCCHHHHHCTTCCEEE
T ss_pred cCCCCCcChhhhhcCccccCc
Confidence 58877 99999999999964
No 161
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...
Probab=80.71 E-value=1.5 Score=40.18 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=16.3
Q ss_pred cccccccccCCCCcEEEcC
Q psy11935 789 GPVAACAMPVMKGWRVKTN 807 (1334)
Q Consensus 789 ~~~~aC~~~v~~gm~i~t~ 807 (1334)
+...||.+.+..+|.|.+.
T Consensus 74 g~~LaCq~~~~~d~~v~~~ 92 (98)
T 1czp_A 74 GYVLTCVAYPTSDVVIQTH 92 (98)
T ss_dssp TEEEGGGCEESSCEEEECC
T ss_pred CeEEeeeCEECCCEEEEec
Confidence 4678999999999999883
No 162
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=80.10 E-value=39 Score=31.62 Aligned_cols=35 Identities=17% Similarity=0.080 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 178 EVYEAENKKLKAELTQRDIKLKETNHLLKEESKKR 212 (1334)
Q Consensus 178 ~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~ 212 (1334)
.++++.+.+...-.+.+...+--+.+++++-+-..
T Consensus 101 rELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~ 135 (167)
T 4gkw_A 101 GELEADLKEKDSMVESLTETIGILRKELENEKLKA 135 (167)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444334444444444444444433333
No 163
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=79.89 E-value=21 Score=32.03 Aligned_cols=22 Identities=5% Similarity=-0.020 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy11935 14 SASIKTELREFYQTQLNNNQKA 35 (1334)
Q Consensus 14 ~e~~~~~~~~~l~~l~~~~~~l 35 (1334)
++.++..++..+...+.....+
T Consensus 19 ~eeel~~lke~l~k~e~~rkel 40 (89)
T 3bas_A 19 QLKQMDKMKEDLAKTERIKKEL 40 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 164
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=79.48 E-value=37 Score=40.58 Aligned_cols=29 Identities=10% Similarity=-0.137 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 194 RDIKLKETNHLLKEESKKRELMAKKVESV 222 (1334)
Q Consensus 194 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 222 (1334)
..++++.++.+.+.++..+.++...+...
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (487)
T 3oja_A 440 YQHKETQLAEENARLKKLNGEADLALASA 468 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhhhhhhhhhhhhhHhc
Confidence 33333333333334444444444444433
No 165
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Probab=78.97 E-value=1.5 Score=56.83 Aligned_cols=66 Identities=12% Similarity=0.256 Sum_probs=45.7
Q ss_pred cEEEEECCEEEEe--CCCCcchh------------------------------hhhhhcCCC--C-CCCEEEcCCHHHH-
Q psy11935 664 KFEVFIDDKKVMV--DPGTTVLQ------------------------------PVAACAMPV--M-KGWRVKTNSEMTR- 707 (1334)
Q Consensus 664 ~~~~~idg~~~~v--~~g~til~------------------------------~~~ac~~~~--~-~gm~v~t~s~~~~- 707 (1334)
+++++|||++++| ++++|+|+ ++.||.+|+ . +|..|.|=-+.-.
T Consensus 3 ~~~~~~ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~~g~CGaCtv~vdg~~~~sC~~~~~~~~~g~~i~Tiegl~~~ 82 (907)
T 1vlb_A 3 QKVITVNGIEQNLFVDAEALLSDVLRQQLGLTGVKVGCEQGQCGACSVILDGKVVRACVTKMKRVADGAQITTIEGVGQP 82 (907)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEETTEEEEGGGCBGGGSCTTCEEECHHHHCBT
T ss_pred eEEEEECCEEEEEecCCCChHHHHHHHhcCCCeecCCCCCCCcCccEEEECCeEeechHhHHHHHcCCCcEEEECCCCCC
Confidence 6899999988655 59999999 889999987 3 7999998111100
Q ss_pred HHHHHHHHHHHHhCCCCCCCCC
Q psy11935 708 RAREGVMEFLLVNHPLDCPICD 729 (1334)
Q Consensus 708 ~~r~~~~~~ll~~hp~~C~~c~ 729 (1334)
..-.-|-+-+..+|-.-|..|-
T Consensus 83 ~~~~~~q~a~~~~~~~qCG~c~ 104 (907)
T 1vlb_A 83 ENLHPLQKAWVLHGGAQCGFCS 104 (907)
T ss_dssp TBCCHHHHHHHHHTCCSSCTTH
T ss_pred cCcCHHHHHHHHcCCCCCCcCh
Confidence 0012345556677888886664
No 166
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=78.78 E-value=0.51 Score=47.81 Aligned_cols=95 Identities=14% Similarity=0.138 Sum_probs=51.1
Q ss_pred cceeecCCCcccccccccCCC--CcEEEcCCHHH-HHHHHHHHHHHhhCCCCCCcccccCCccchhhhhcccCccccccC
Q psy11935 780 LQSINRHWIGPVAACAMPVMK--GWRVKTNSEMT-RRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGNDLGTTG 856 (1334)
Q Consensus 780 ~~~v~~~~~~~~~aC~~~v~~--gm~i~t~s~~~-r~~r~~~~~~ll~~h~~~C~~C~~~g~c~~~~~e~~g~~~~~~~~ 856 (1334)
.+.|..++ .++.||.|++.+ ||.|.|-.+.. .....-+-+.++..|.+.|+.|..+ . +.-...+-..+
T Consensus 48 aCtV~vdG-~~v~sC~~~~~~~~G~~v~TiEgL~~~~~~~p~q~a~~~~~~~qCG~Ctpg-~-------im~a~~ll~~~ 118 (161)
T 1rm6_C 48 ACTVLVDD-RPRLACSTLAHQVAGKKVETVESLATQGTLSKLQAAFHEKLGTQCGFCTPG-M-------IMASEALLRKN 118 (161)
T ss_dssp TTEEEETT-EEEEGGGSBGGGGTTSEEECGGGSSBTTBCCHHHHHHHHHTCCSSCSSHHH-H-------HHHHHHHHHHC
T ss_pred CCEEEECC-cEEechHHHHHHhCCceEEEECCCCCCCccCHHHHHHHHhCCCcCCCCchH-H-------HHHHHHHHhcC
Confidence 33444432 589999999987 99999832111 0011223445666788999999332 0 01011111111
Q ss_pred C-CCCceecc-cccccccccccccccccc
Q psy11935 857 R-GSDMQVGT-YVEKLFLSELSGNVIDLC 883 (1334)
Q Consensus 857 r-g~~~~i~~-~~~~~~~~~~cg~cv~~C 883 (1334)
+ +.+..|.. ..+....|..+.+|+++|
T Consensus 119 ~~pt~~~i~~~l~gnlcRCtgy~~i~~A~ 147 (161)
T 1rm6_C 119 PSPSRDEIKAALAGNLCRCTGYVKIIKSV 147 (161)
T ss_dssp SSCCHHHHHHHTTTCCCSSSCSHHHHHHH
T ss_pred CCCCHHHHHHHHcCCeECCCCCHHHHHHH
Confidence 2 11223322 223455688899999998
No 167
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=78.31 E-value=5.8 Score=38.16 Aligned_cols=73 Identities=11% Similarity=0.035 Sum_probs=28.4
Q ss_pred hhhhcchhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 158 KQISEKPGATKLMLDFKAKCEVYEAEN-KKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQAI 231 (1334)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~l~~~l-~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (1334)
....++...+.....++.+++++.+.| ++.+.-.......-..++.+...+..++.+.+.-+..+ +.++..++
T Consensus 57 eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~l-q~QL~~LK 130 (135)
T 2e7s_A 57 KENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTL-TLQLKNLK 130 (135)
T ss_dssp HTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 333334444444445555555555533 33333333333344444444455555555555555555 44444443
No 168
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=78.17 E-value=0.69 Score=61.42 Aligned_cols=24 Identities=4% Similarity=-0.140 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCCccc
Q psy11935 810 MTRRAREGVMEFLLVNHPLDCPIC 833 (1334)
Q Consensus 810 ~~r~~r~~~~~~ll~~h~~~C~~C 833 (1334)
.....|+..++.+...|...|..|
T Consensus 881 ~~~~~r~~~~~~~~~~~~~~~~~~ 904 (1025)
T 1gte_A 881 PYLEQRKKIIAEEKMRLKEQNAAF 904 (1025)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHhccccccccc
Confidence 456778888888888888888777
No 169
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=78.00 E-value=21 Score=34.97 Aligned_cols=52 Identities=13% Similarity=0.217 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 171 LDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESV 222 (1334)
Q Consensus 171 ~~~~~~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 222 (1334)
..++.++..++.++..+..++.+-.+.++.+..++..++-+...+++++..+
T Consensus 71 ~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kL 122 (152)
T 3a7p_A 71 AILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDL 122 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555555555555555444444444
No 170
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=78.00 E-value=5.2 Score=37.08 Aligned_cols=22 Identities=9% Similarity=0.054 Sum_probs=18.7
Q ss_pred EEE-EECC--EEEEeCCCCcchhhh
Q psy11935 665 FEV-FIDD--KKVMVDPGTTVLQPV 686 (1334)
Q Consensus 665 ~~~-~idg--~~~~v~~g~til~~~ 686 (1334)
|+| ..|| ++|+|++|+|||+..
T Consensus 3 V~~~~~~g~~~~~~~~~g~tlL~aa 27 (105)
T 1b9r_A 3 VVFIDEQSGEYAVDAQDGQSLMEVA 27 (105)
T ss_dssp EEECCTTTSCEEEECCTTCCTTHHH
T ss_pred EEEEeCCCCEEEEEECCCChHHHHH
Confidence 566 4689 999999999999954
No 171
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=77.22 E-value=1e+02 Score=34.88 Aligned_cols=74 Identities=8% Similarity=-0.009 Sum_probs=52.4
Q ss_pred hhhHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHhhHHHHH
Q psy11935 402 PALYTKTVRSVTLKISKEKIESLERNLQTETQRSRKLEEELQDTRQTCE-EVVRKEVSIVTVTLFLERLRSSHSKRS 477 (1334)
Q Consensus 402 k~ei~~L~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~-e~~~~~~~~~~l~~~~~~~~~~~~~~~ 477 (1334)
+..|..|..++ ...+.+...+...+..++..+..-...+......+. .+......+..++.++++++.++..+.
T Consensus 122 ~~~L~~L~~~i--~~~q~~~~~~~~~L~~F~~~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~~~~ 196 (346)
T 2nrj_A 122 KEGITDLRGEI--QQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSVNYYK 196 (346)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGGCGGG
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence 45567777777 777777777777777777777766666666666655 555556668888888888877776433
No 172
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=76.89 E-value=0.53 Score=54.92 Aligned_cols=19 Identities=26% Similarity=0.520 Sum_probs=17.0
Q ss_pred ccccccccccccccccccc
Q psy11935 872 LSELSGNVIDLCPVGALTS 890 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~ 890 (1334)
.|+.||+|+.+||+|||..
T Consensus 257 ~Ci~Cg~C~~~CP~~Ai~~ 275 (386)
T 3or1_B 257 RCMYCGNCYTMCPALPLSD 275 (386)
T ss_dssp TCCCCCHHHHHCTTCCCCC
T ss_pred cCCccccHHHhCcHhhCcC
Confidence 6999999999999999943
No 173
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=76.72 E-value=47 Score=30.71 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 198 LKETNHLLKEESKKRELMAKKVESV 222 (1334)
Q Consensus 198 l~~l~~~~~~~~~~~~~~~~~~~~~ 222 (1334)
+++++.++..+..++++...+++.+
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erl 97 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERL 97 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444433
No 174
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=76.31 E-value=49 Score=30.64 Aligned_cols=44 Identities=16% Similarity=0.108 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy11935 9 TLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE 52 (1334)
Q Consensus 9 ~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~ 52 (1334)
+--.-++.++..-+.-+..-+.+-...+.-+..|...+++.+.+
T Consensus 25 N~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq 68 (121)
T 3mq7_A 25 NVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQ 68 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555556665666566666666555555544443
No 175
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=76.13 E-value=25 Score=31.28 Aligned_cols=34 Identities=18% Similarity=0.093 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 53 LREFYQTQLNNNQKAQDEIQTLLAKSASIKTELR 86 (1334)
Q Consensus 53 ~~er~~~~~~~~~~l~~~i~~l~~~~~~~~~~l~ 86 (1334)
.+..+..+++....+.-...+|+.+++.+.+++.
T Consensus 47 ~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 47 AENTLQSFRQDVDNASLARLDLERKVESLQEEIA 80 (86)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444445444444443
No 176
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=75.77 E-value=15 Score=35.37 Aligned_cols=22 Identities=9% Similarity=0.108 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q psy11935 120 QQKEKTIVENAAKQLKQISENE 141 (1334)
Q Consensus 120 ~~~~~~i~~~~~~~ie~~~~~~ 141 (1334)
..++.+++++-..+|+..|...
T Consensus 70 ~~ie~ElE~LTasLFeEAN~MV 91 (135)
T 2e7s_A 70 DKLNKEVEDLTASLFDEANNLV 91 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777776544
No 177
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=75.21 E-value=24 Score=31.58 Aligned_cols=77 Identities=6% Similarity=0.092 Sum_probs=36.7
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHhhHHHHH
Q psy11935 405 YTKTVRSVTLKISKEKIESLERNLQTETQRSRKLE---EELQDTRQTCE----EVVRKEVSIVTVTLFLERLRSSHSKRS 477 (1334)
Q Consensus 405 i~~L~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~---~~l~~~~~~~~----e~~~~~~~~~~l~~~~~~~~~~~~~~~ 477 (1334)
++.|...+ ....+.+...+..+.+++.++.+.+ +.+.-++++.. +........+.+..+++++...+..+.
T Consensus 4 ~~~L~~~L--~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq 81 (94)
T 3jsv_C 4 LEDLRQQL--QQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQ 81 (94)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44555555 4445555555555555555555555 33344444444 344444444445445555555444444
Q ss_pred hhHHHH
Q psy11935 478 KNADSL 483 (1334)
Q Consensus 478 ~e~~~l 483 (1334)
.+...+
T Consensus 82 ~q~~~L 87 (94)
T 3jsv_C 82 REFNKL 87 (94)
T ss_dssp HTTC--
T ss_pred HHHHHH
Confidence 443333
No 178
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A
Probab=74.79 E-value=0.56 Score=39.09 Aligned_cols=18 Identities=17% Similarity=0.381 Sum_probs=16.0
Q ss_pred ccccccccccccccccccc
Q psy11935 872 LSELSGNVIDLCPVGALTS 890 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~ 890 (1334)
.|+.||.|+.+|| +|+..
T Consensus 10 ~C~~Cg~C~~~CP-~~~~~ 27 (64)
T 1dax_A 10 ECIACESCVEIAP-GAFAM 27 (64)
T ss_dssp TCCSCCHHHHHCT-TTEEE
T ss_pred cCCCchHHHHhCC-ccEeE
Confidence 5999999999999 99853
No 179
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=74.72 E-value=0.56 Score=46.97 Aligned_cols=20 Identities=15% Similarity=0.199 Sum_probs=17.7
Q ss_pred cccccc-----cccccccccccccc
Q psy11935 872 LSELSG-----NVIDLCPVGALTSK 891 (1334)
Q Consensus 872 ~~~~cg-----~cv~~CpvGAl~~k 891 (1334)
.|+.|| .|+++||+|||...
T Consensus 9 ~C~~C~~~~~~~C~~~CP~~ai~~~ 33 (150)
T 1jnr_B 9 KCDGCKALERTACEYICPNDLMTLD 33 (150)
T ss_dssp TCCSCCSSSSCHHHHHCTTSCEEEE
T ss_pred cCCCCCCcccccchhhcCccCeEEe
Confidence 599999 99999999999643
No 180
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=74.08 E-value=27 Score=31.81 Aligned_cols=20 Identities=10% Similarity=0.031 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11935 174 KAKCEVYEAENKKLKAELTQ 193 (1334)
Q Consensus 174 ~~~l~~l~~~l~~~~~~l~~ 193 (1334)
+..+++.+..+.++..+..+
T Consensus 36 KD~LEe~eE~~aql~Re~~e 55 (103)
T 4h22_A 36 KDMLLELEEQLAESRRQYEE 55 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334433433333333333
No 181
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=73.98 E-value=59 Score=38.23 Aligned_cols=26 Identities=12% Similarity=0.015 Sum_probs=12.9
Q ss_pred eechhhhh--ccC-c----cchhccCCeEeeec
Q psy11935 307 STHMNIVE--RDI-P----NSADDMRKYIEMQY 332 (1334)
Q Consensus 307 FLPl~~Ik--r~l-~----~~~~~~~G~iG~A~ 332 (1334)
||=|+.|. ..- + -.+.+..|-..+|.
T Consensus 297 WLGle~ih~LT~~~~~eL~I~Led~~g~~~yA~ 329 (464)
T 1m1j_B 297 WLGNDKISQLTKIGPTKVLIEMEDWNGDKVSAL 329 (464)
T ss_dssp ECCHHHHHHHHTTSCEEEEEEEECSSSCEEEEE
T ss_pred EecccceeeccCCCCEEEEEEEEecCCcEEEEe
Confidence 56677665 111 1 13345566655553
No 182
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=73.16 E-value=9.2 Score=34.86 Aligned_cols=64 Identities=14% Similarity=0.077 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--Hhhh---------------HHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy11935 16 SIKTELREFYQTQLNNNQKAQDEIQTLLAKSAS--IKTE---------------LREFYQTQLNNNQKAQDEIQTLLAKS 78 (1334)
Q Consensus 16 ~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~--l~~~---------------~~er~~~~~~~~~~l~~~i~~l~~~~ 78 (1334)
..+..++.+++.|+...+.|.+++..+..++++ ++|. ...-++..++.++.|+.++..|...+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777788888888888888888888888877 3333 44444445566666666666655554
Q ss_pred H
Q psy11935 79 A 79 (1334)
Q Consensus 79 ~ 79 (1334)
.
T Consensus 92 ~ 92 (100)
T 1go4_E 92 R 92 (100)
T ss_dssp T
T ss_pred H
Confidence 3
No 183
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=72.99 E-value=1.8 Score=36.53 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=19.3
Q ss_pred EEEECCEEEEeCCCCcchhhhh
Q psy11935 666 EVFIDDKKVMVDPGTTVLQPVA 687 (1334)
Q Consensus 666 ~~~idg~~~~v~~g~til~~~~ 687 (1334)
+|+|||+++++++|.||.++..
T Consensus 2 ~i~vNg~~~~~~~~~tv~~ll~ 23 (66)
T 1f0z_A 2 QILFNDQAMQCAAGQTVHELLE 23 (66)
T ss_dssp CEEESSCEECCCTTCCHHHHHH
T ss_pred EEEECCEEEEcCCCCcHHHHHH
Confidence 6899999999999999999433
No 184
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=72.72 E-value=50 Score=30.67 Aligned_cols=18 Identities=6% Similarity=-0.112 Sum_probs=8.5
Q ss_pred HHhHhhhhhHHHHHHHHH
Q psy11935 138 SENEFKQKEKTIVENAAK 155 (1334)
Q Consensus 138 ~~~~~l~n~~~~~~~~~~ 155 (1334)
..+..++.++..++..+.
T Consensus 24 ~~~~~l~~~i~~l~~~l~ 41 (112)
T 1l8d_A 24 QRIGELKNKIGDLKTAIE 41 (112)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444445555555555
No 185
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=72.72 E-value=0.62 Score=47.54 Aligned_cols=20 Identities=10% Similarity=0.233 Sum_probs=17.6
Q ss_pred cccccc-----cccccccccccccc
Q psy11935 872 LSELSG-----NVIDLCPVGALTSK 891 (1334)
Q Consensus 872 ~~~~cg-----~cv~~CpvGAl~~k 891 (1334)
.|+.|| .|+.+||++||...
T Consensus 8 ~C~gC~~c~~~~C~~~CP~~ai~~~ 32 (166)
T 3gyx_B 8 KCDGCKGGEKTACMYICPNDLMILD 32 (166)
T ss_dssp TCCCCCSSSCCHHHHHCTTSCEEEE
T ss_pred hcCCCCCCCcchhHHhCCccccEEe
Confidence 599999 99999999999543
No 186
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=72.59 E-value=65 Score=30.91 Aligned_cols=36 Identities=6% Similarity=0.149 Sum_probs=21.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 53 LREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREF 88 (1334)
Q Consensus 53 ~~er~~~~~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 88 (1334)
..+-+..++.+++.++..++.++..+..+...+..+
T Consensus 86 ~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~ 121 (133)
T 1fxk_C 86 FEDAMESIKSQKNELESTLQKMGENLRAITDIMMKL 121 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666555555554444
No 187
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=72.07 E-value=9.8 Score=46.62 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 64 NQKAQDEIQTLLAKSASIKTELRE 87 (1334)
Q Consensus 64 ~~~l~~~i~~l~~~~~~~~~~l~~ 87 (1334)
...++.++..++++.....++|..
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~ 360 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLE 360 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 188
>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A*
Probab=71.50 E-value=16 Score=46.26 Aligned_cols=50 Identities=16% Similarity=0.120 Sum_probs=39.2
Q ss_pred CCcEEEEECCChhhh-------HHhhcCCCceEEEEcCCCChhhccccEEecCCCCC
Q psy11935 1192 PPKVLFLLGADEGSI-------SRDDVGKDCFIIYQGHHGDHGASIADAILPGAAYT 1241 (1334)
Q Consensus 1192 ~ik~l~~~g~np~~~-------~~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~ 1241 (1334)
..++++++|+||... ..++..+-.-+|++|+..+.|+..||..||...-+
T Consensus 166 ~ad~il~~G~n~~~~~p~~~~~l~~a~~~G~klividPr~t~ta~~Ad~~l~irPGt 222 (715)
T 2iv2_X 166 NTDLVFVFGYNPADSHPIVANHVINAKRNGAKIIVCDPRKIETARIADMHIALKNGS 222 (715)
T ss_dssp GCSEEEEESCCHHHHCHHHHHHHHHHHHTTCEEEEECSSCCHHHHTCSEEECCCTTC
T ss_pred cCCEEEEEcCChHHhCHHHHHHHHHHHHCCCeEEEEcCCCCchhHhhCEEeccCCCc
Confidence 478999999999431 23444455569999999999999999999997644
No 189
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=71.08 E-value=81 Score=36.34 Aligned_cols=27 Identities=7% Similarity=0.171 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 196 IKLKETNHLLKEESKKRELMAKKVESV 222 (1334)
Q Consensus 196 ~~l~~l~~~~~~~~~~~~~~~~~~~~~ 222 (1334)
.+|..|+..++++..+++.|+..+...
T Consensus 132 ~~IrvLq~~l~~q~skIQRLE~dI~~q 158 (491)
T 1m1j_A 132 NRIKALQNSIQEQVVEMKRLEVDIDIK 158 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 190
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=71.02 E-value=0.86 Score=50.28 Aligned_cols=15 Identities=13% Similarity=0.164 Sum_probs=10.0
Q ss_pred cCHHHHHHHHHHHhc
Q psy11935 974 TEWEDALIAVAQKLQ 988 (1334)
Q Consensus 974 iSWdeAl~~ia~~L~ 988 (1334)
++-++|+..+++.|+
T Consensus 236 l~Pee~v~~A~~iL~ 250 (265)
T 2pa8_D 236 LKPERILLEAGKSII 250 (265)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 466777777776665
No 191
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=70.82 E-value=5.5 Score=36.94 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=19.2
Q ss_pred cEEE-EECC--EEEEeCCCCcchhhh
Q psy11935 664 KFEV-FIDD--KKVMVDPGTTVLQPV 686 (1334)
Q Consensus 664 ~~~~-~idg--~~~~v~~g~til~~~ 686 (1334)
.|+| ..|| ++|+|++|+|||+..
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlLeaa 27 (106)
T 1xlq_A 2 KVVYVSHDGTRRELDVADGVSLMQAA 27 (106)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 3666 4799 999999999999954
No 192
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=70.46 E-value=46 Score=29.52 Aligned_cols=25 Identities=12% Similarity=0.236 Sum_probs=10.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHH
Q psy11935 56 FYQTQLNNNQKAQDEIQTLLAKSAS 80 (1334)
Q Consensus 56 r~~~~~~~~~~l~~~i~~l~~~~~~ 80 (1334)
+++.-....+.++.++..+...+..
T Consensus 36 KyE~E~~~R~~~E~d~~~LrkdvD~ 60 (86)
T 3swk_A 36 KLQEEMLQREEAENTLQSFRQDVDN 60 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3333333334444444444444333
No 193
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=70.19 E-value=55 Score=28.58 Aligned_cols=15 Identities=20% Similarity=0.346 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy11935 600 TNHLLKEESKKRELM 614 (1334)
Q Consensus 600 l~~~l~~~~~~~~~l 614 (1334)
++..+.+....+.-+
T Consensus 72 LE~RLsKtEKDkAiL 86 (101)
T 1d7m_A 72 LEARLAKTEKDRAIL 86 (101)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHH
Confidence 333344333333333
No 194
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Probab=70.14 E-value=0.7 Score=37.54 Aligned_cols=17 Identities=12% Similarity=0.368 Sum_probs=14.7
Q ss_pred cccccccccccccccccc
Q psy11935 872 LSELSGNVIDLCPVGALT 889 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~ 889 (1334)
.|+.||.|+++||+ ++.
T Consensus 7 ~C~~C~~C~~~CP~-~~~ 23 (58)
T 1f2g_A 7 DCMACEACVEICPD-VFE 23 (58)
T ss_dssp TCCCCCHHHHHCTT-TEE
T ss_pred cCccchHHHHhCCc-cEE
Confidence 58999999999998 553
No 195
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=69.82 E-value=64 Score=29.16 Aligned_cols=20 Identities=10% Similarity=0.149 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy11935 121 QKEKTIVENAAKQLKQISEN 140 (1334)
Q Consensus 121 ~~~~~i~~~~~~~ie~~~~~ 140 (1334)
.++.+++++-..+|+..|..
T Consensus 51 ~ie~ElEeLTasLFeEAN~M 70 (97)
T 2eqb_B 51 KLNKEVEDLTASLFDEANNM 70 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666655543
No 196
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=69.78 E-value=59 Score=29.33 Aligned_cols=37 Identities=11% Similarity=0.013 Sum_probs=24.0
Q ss_pred hhhHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 402 PALYTKTVRSVTLKISKEKIESLERNLQTETQRSRKLEE 440 (1334)
Q Consensus 402 k~ei~~L~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~ 440 (1334)
|.++..|...+ +..-.++..|+++=..|..++..+.+
T Consensus 8 Ke~mq~LNdRl--AsyIdKVR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 8 KVELQELNDRF--ANLIDKVRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp CCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56677777777 66666666666666666665555443
No 197
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=69.78 E-value=6.9 Score=39.95 Aligned_cols=114 Identities=17% Similarity=0.121 Sum_probs=60.2
Q ss_pred eecCHHHHHHHHHHHhcc-CCEEEEeCCcCCHHHHHHHHHHHHHhCCCccccCC---------CCCc-chhhhhhhhhcc
Q psy11935 972 VATEWEDALIAVAQKLQT-SEVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEY---------AFPL-EGAGTDLRANYL 1040 (1334)
Q Consensus 972 ~~iSWdeAl~~ia~~L~~-~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~---------~~~~-~~~~~~~~~~~~ 1040 (1334)
.-+|-++| +++.|++ .+..+++|+....+....+.+|+++ |.|.+.+.. .++. ...|......++
T Consensus 20 ~~~~i~~a---~a~lI~~AkRPvIl~Ggv~~~~A~~eL~~~ae~-~iPVvtT~~g~g~~~~~~~~p~~~~~G~~~~g~~~ 95 (174)
T 1ytl_A 20 TLLEKGKP---VANMIKKAKRPLLIVGPDMTDEMFERVKKFVEK-DITVVATGSAITRFIDAGLGEKVNYAVLHELTQFL 95 (174)
T ss_dssp EECCCHHH---HHHHHHHCSSEEEEECSCCCHHHHHHHHHHHTS-SSEEEEETTHHHHHHHTTCGGGSEEECHHHHHHHH
T ss_pred eeccHHHH---HHHHHHcCCCCEEEECCCCCccHHHHHHHHHHc-CCCEEEcccccCcCCCCCCCccccccccHHHHHHh
Confidence 45665555 0444444 6666777763345556678899988 988665421 1110 011111111111
Q ss_pred C---CCCcccccccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCCCC
Q psy11935 1041 L---NNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDL 1092 (1334)
Q Consensus 1041 ~---~~~~~die~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~~~ 1092 (1334)
. +.....+.+||+||.+|+.+........ .+... ..+++++.||-.+..
T Consensus 96 ~~~~~~~~~~~~~aDLvI~iG~rf~~~~~~t~-~~~~f--ap~akii~Idk~~~~ 147 (174)
T 1ytl_A 96 LDPDWKGFDGQGNYDLVLMLGSIYYHGSQMLA-AIKNF--APHIRALAIDRYYHP 147 (174)
T ss_dssp HSTTCCCTTSSCCCSEEEEESCCHHHHHHHHH-HHHHH--CTTCEEEECSSSCCT
T ss_pred hhhhhhhhcccCCCCEEEEECCcCCccccccc-ccccc--CCCCeEEEeCCCcCC
Confidence 1 1223334899999999998642222211 12222 236899999865544
No 198
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=69.77 E-value=1.2 Score=52.12 Aligned_cols=42 Identities=19% Similarity=0.220 Sum_probs=26.8
Q ss_pred ccccccccccccccccccCCcccCCCCcceeeeeecccCC---CCCceEEEe
Q psy11935 874 ELSGNVIDLCPVGALTSKPYSFTARPWETRKTESVDVLDA---VGSNIIVST 922 (1334)
Q Consensus 874 ~~cg~cv~~CpvGAl~~k~~~~~~r~we~~~~~s~c~~C~---~gC~i~v~v 922 (1334)
..|+.|+++||||||.-.. -.+.....-|..|+ ..|+.-+..
T Consensus 258 ~i~~~cv~~CPt~Ai~~~~-------~~~~id~~~Ci~Cg~Ci~~CP~~~~~ 302 (418)
T 3mm5_A 258 DIENEVVKLCPTGAIKWDG-------KELTIDNRECVRCMHCINKMPKALKP 302 (418)
T ss_dssp CHHHHTGGGCTTCCEEECS-------SCEEECTTTCCCCCHHHHHCTTTEEC
T ss_pred ccCccccccCCccccccCC-------ceeEEChhhcCccChhHHhCcHhhcc
Confidence 4478999999999996532 13344445566655 467665444
No 199
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=69.74 E-value=0.96 Score=56.04 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=29.9
Q ss_pred CCccchhhhhc-ccCccccccCCCCCceecccccccccccccccccccccccccccc
Q psy11935 836 GGECDLQDQSM-AFGNDLGTTGRGSDMQVGTYVEKLFLSELSGNVIDLCPVGALTSK 891 (1334)
Q Consensus 836 ~g~c~~~~~e~-~g~~~~~~~~rg~~~~i~~~~~~~~~~~~cg~cv~~CpvGAl~~k 891 (1334)
+-+|.++|=-+ .|...+.+........|. + -.|+.||-||.-||-+||+..
T Consensus 22 ~~~c~~~cp~~~~~~~~~~~~~~~~~~~i~---~--~~c~~~~~~~~~cp~~~i~i~ 73 (608)
T 3j16_B 22 RQECKRSCPVVKTGKLCIEVTPTSKIAFIS---E--ILCIGCGICVKKCPFDAIQII 73 (608)
T ss_dssp CSHHHHHCHHHHHTCCSEEEETTTTEEEEC---T--TTCCCCCHHHHHCSSCCEEEE
T ss_pred ccchhhcCCCccCCceEEEEcCCCCceEEe---h--hhccccccccccCCccceEEe
Confidence 35678888322 344443332222211121 1 149999999999999999554
No 200
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Probab=69.60 E-value=0.72 Score=37.59 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=14.6
Q ss_pred cccccccccccccccccc
Q psy11935 872 LSELSGNVIDLCPVGALT 889 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~ 889 (1334)
.|+.||.|+.+||. ++.
T Consensus 9 ~C~~C~~C~~~Cp~-~~~ 25 (60)
T 1rof_A 9 ACIGCGVCENLCPD-VFQ 25 (60)
T ss_dssp TCCSCCSSTTTCTT-TBC
T ss_pred hCCCChHHHHhCcH-HHe
Confidence 58999999999997 553
No 201
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=69.49 E-value=52 Score=30.75 Aligned_cols=29 Identities=10% Similarity=0.235 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 590 LTQRDIKLKETNHLLKEESKKRELMAKKV 618 (1334)
Q Consensus 590 ~~~~~~~~~~l~~~l~~~~~~~~~l~~~i 618 (1334)
.+.+...+..++..+..+..+...+..++
T Consensus 79 ~e~ie~~i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 79 IETLEVRLNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 202
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=69.44 E-value=9.2 Score=34.50 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=18.5
Q ss_pred cEEEEECC--EEEEeCCCCcchhhh
Q psy11935 664 KFEVFIDD--KKVMVDPGTTVLQPV 686 (1334)
Q Consensus 664 ~~~~~idg--~~~~v~~g~til~~~ 686 (1334)
.|+|..+| ++|+|++|+|||+..
T Consensus 3 ~V~~~~~~~~~~~~~~~g~tlL~a~ 27 (93)
T 1wri_A 3 KVTLKTPDGDITFDVEPGERLIDIG 27 (93)
T ss_dssp EEEEEETTEEEEEEECTTSCHHHHH
T ss_pred EEEEEECCCeEEEEECCCCcHHHHH
Confidence 36666676 899999999999944
No 203
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=68.70 E-value=63 Score=28.61 Aligned_cols=33 Identities=21% Similarity=0.409 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 190 ELTQRDIKLKETNHLLKEESKKRELMAKKVESV 222 (1334)
Q Consensus 190 ~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 222 (1334)
.+.+.+.++...+.++.+..++.++.+.+.+.+
T Consensus 56 ~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaL 88 (114)
T 2xzr_A 56 TLQQHSARLDSQQRQINENHKEMKQIEDKIEEI 88 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555555555555555
No 204
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Probab=68.21 E-value=1.4 Score=57.10 Aligned_cols=66 Identities=14% Similarity=0.293 Sum_probs=45.9
Q ss_pred cEEEEECCEEE--EeCCCCcchh------------------------------hhhhhcCCC--C-CCCEEEcCCHHHH-
Q psy11935 664 KFEVFIDDKKV--MVDPGTTVLQ------------------------------PVAACAMPV--M-KGWRVKTNSEMTR- 707 (1334)
Q Consensus 664 ~~~~~idg~~~--~v~~g~til~------------------------------~~~ac~~~~--~-~gm~v~t~s~~~~- 707 (1334)
+++++|||+++ .|++++|+|+ ++.||.+|+ . +|..|.|=-+--.
T Consensus 3 ~~~~~~ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~~G~CGaCtv~vdg~~v~sC~~~~~~~~~g~~i~TiEgl~~~ 82 (907)
T 1dgj_A 3 TKTLIVNGMARRLLVSPNDLLVDVLRSQLQLTSVKVGCGKGQCGACTVILDGKVVRACIIKMSRVAENASVTTLEGIGAP 82 (907)
T ss_dssp EEECEETTBCCEEEECTTCBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEETTEEEEGGGCBGGGSCTTCEEECGGGTCBT
T ss_pred eEEEEECCEEEEEecCCCCcHHHHHHHhcCCCccCCCCCCCCcCceEEEECCeEeehhHhHHHHHcCCCcEEEECCCCCC
Confidence 58999999874 5569999999 889999987 3 7999998211100
Q ss_pred HHHHHHHHHHHHhCCCCCCCCC
Q psy11935 708 RAREGVMEFLLVNHPLDCPICD 729 (1334)
Q Consensus 708 ~~r~~~~~~ll~~hp~~C~~c~ 729 (1334)
..-.-|-+-+..+|-.-|..|-
T Consensus 83 ~~~~~~q~a~~~~~~~qCG~c~ 104 (907)
T 1dgj_A 83 DCLHPLQHAWIQHGAAQCGFCT 104 (907)
T ss_dssp TBCCHHHHHHHHHTCCSSCTTH
T ss_pred cccCHHHHHHHHcCCCCCCcCh
Confidence 0012344556667888886664
No 205
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=67.67 E-value=0.98 Score=53.01 Aligned_cols=17 Identities=12% Similarity=-0.009 Sum_probs=15.0
Q ss_pred ccccccccccccccccc
Q psy11935 872 LSELSGNVIDLCPVGAL 888 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl 888 (1334)
.|+.||+|+.+||.+|.
T Consensus 302 ~C~~Cg~Ci~~CP~al~ 318 (437)
T 3or1_A 302 NCTRCMHCINTMPRALK 318 (437)
T ss_dssp GCCCCSHHHHHCTTTEE
T ss_pred cCCchhhhHhhCcHhhc
Confidence 69999999999999665
No 206
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=67.38 E-value=78 Score=36.44 Aligned_cols=27 Identities=11% Similarity=0.074 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 111 AELTLHREFQQKEKTIVENAAKQLKQI 137 (1334)
Q Consensus 111 ~~~~l~~~~~~~~~~i~~~~~~~ie~~ 137 (1334)
.+..+.+...+++..|+-++..+.+.+
T Consensus 105 ndn~~~e~S~eLe~ri~yIK~kVd~qi 131 (491)
T 1m1j_A 105 LDENYGHVSTELRRRIVTLKQRVATQV 131 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444443333
No 207
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=67.36 E-value=9.5 Score=46.76 Aligned_cols=20 Identities=15% Similarity=0.154 Sum_probs=11.3
Q ss_pred hhch-hhhHHHHHHHHhhCCC
Q psy11935 349 IPNS-ADDMRKYIEMLLEKPP 368 (1334)
Q Consensus 349 LG~t-~e~ld~A~~iak~~~~ 368 (1334)
-|.+ .+=.-.++.++++.+.
T Consensus 180 ~G~s~~eA~~~yL~~a~~lp~ 200 (575)
T 2i1j_A 180 RGMLREDAMMEYLKIAQDLEM 200 (575)
T ss_dssp TTCCHHHHHHHHHHHHTTSTT
T ss_pred cCCCHHHHHHHHHHHHHhccc
Confidence 3555 4444566666666554
No 208
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=66.75 E-value=2.8 Score=36.24 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=18.6
Q ss_pred EEEECCEEEEeCCCCcchhhhhh
Q psy11935 666 EVFIDDKKVMVDPGTTVLQPVAA 688 (1334)
Q Consensus 666 ~~~idg~~~~v~~g~til~~~~a 688 (1334)
+|+|||+++++ +|.||.++...
T Consensus 2 ~I~vNG~~~e~-~~~Tl~~LL~~ 23 (73)
T 2kl0_A 2 LVTINGEQREV-QSASVAALMTE 23 (73)
T ss_dssp CEEETTEEECC-CCSBHHHHHHH
T ss_pred EEEECCEEEEc-CCCcHHHHHHH
Confidence 68999999999 99999994333
No 209
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=66.15 E-value=48 Score=39.37 Aligned_cols=29 Identities=14% Similarity=0.114 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 517 NNVKEKLKEFQTQLDSAELTLHREFQQKE 545 (1334)
Q Consensus 517 ~~l~~~l~~~~~~~a~le~~~~~~~~~~~ 545 (1334)
..++.+|++++..+..++.+........-
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (471)
T 3mq9_A 400 HLLQQELTEAQKGFQDVEAQAATANHTVM 428 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcchhHH
Confidence 44555555555555555555544444433
No 210
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=66.08 E-value=1.1 Score=39.31 Aligned_cols=17 Identities=12% Similarity=0.055 Sum_probs=15.2
Q ss_pred cccccccccccccccccc
Q psy11935 872 LSELSGNVIDLCPVGALT 889 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~ 889 (1334)
.|+.||.|+.+|| +++.
T Consensus 10 ~CigCg~C~~~CP-~~~~ 26 (81)
T 1iqz_A 10 TCIACGACGAAAP-DIYD 26 (81)
T ss_dssp TCCCCSHHHHHCT-TTEE
T ss_pred cCcccChhhHhCc-hhee
Confidence 6999999999999 7774
No 211
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*
Probab=65.30 E-value=3.6 Score=55.48 Aligned_cols=64 Identities=31% Similarity=0.536 Sum_probs=47.6
Q ss_pred CcEEEEECCEEEE---eCCCCcchh----------------------------------------hhhhhcCCC--CCCC
Q psy11935 663 EKFEVFIDDKKVM---VDPGTTVLQ----------------------------------------PVAACAMPV--MKGW 697 (1334)
Q Consensus 663 ~~~~~~idg~~~~---v~~g~til~----------------------------------------~~~ac~~~~--~~gm 697 (1334)
.+++++|||++++ |+|.+|+|+ ++.||.+|+ .+|.
T Consensus 4 ~~i~~~vNg~~~~~~~~~p~~~ll~~LR~~~~ltgtk~gC~~g~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~ 83 (1332)
T 3unc_A 4 DELVFFVNGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDRLQDKIIHFSANACLAPICTLHHV 83 (1332)
T ss_dssp CCEEEEETTEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCSSSSSCTTEEEEEEEETTTTEEEEEEEETTTCBGGGCTTC
T ss_pred ccEEEEECCEEEEeecCCCCCCHHHHHhhhcCCCCcCCCcCCCCCCCcEEEEecccccccccCCeEeehHHhhHHHhCCC
Confidence 3699999999986 689999999 468999988 6899
Q ss_pred EEEcC----C--HHHHHHHHHHHHHHHHhCCCCCCCCCC
Q psy11935 698 RVKTN----S--EMTRRAREGVMEFLLVNHPLDCPICDQ 730 (1334)
Q Consensus 698 ~v~t~----s--~~~~~~r~~~~~~ll~~hp~~C~~c~~ 730 (1334)
.|.|= + .... -|.+-+...|-.-|..|--
T Consensus 84 ~i~TiEgl~~~~~~~h----pvq~a~~~~~~~QCG~Ctp 118 (1332)
T 3unc_A 84 AVTTVEGIGSTKTRLH----PVQERIAKSHGSQCGFCTP 118 (1332)
T ss_dssp EEECGGGTCCTTSCCC----HHHHHHHHTTCCSSCTTHH
T ss_pred EEEEeccccCCCCCcC----HHHHHHHHhCCCCCCCCcc
Confidence 99991 2 1222 3445556678888866653
No 212
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=65.16 E-value=17 Score=44.72 Aligned_cols=109 Identities=17% Similarity=0.247 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhccCCEEEEeCCcCCHHHHHHHHHHHHHhCCCccccC-C---CCCcc-hhhhhhhhhccCCCCccccccc
Q psy11935 977 EDALIAVAQKLQTSEVAGVVGSLADAEAMVALKDLLNKLGSEDLYTE-Y---AFPLE-GAGTDLRANYLLNNKIAGAEEA 1051 (1334)
Q Consensus 977 deAl~~ia~~L~~~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~-~---~~~~~-~~~~~~~~~~~~~~~~~die~a 1051 (1334)
+++++.+++.|...+..+++|+.........+.+|++++|.+.+.+. . .++.. +...+....++.......+.+|
T Consensus 211 ~~~i~~~~~~L~~~rPvIl~G~g~~~~~~~~l~~lae~~~~PV~~t~~~~~~~~~~~hp~~~g~~~~~~~~~~~~~~~~a 290 (578)
T 3lq1_A 211 DSSIQKMVTECTGKKGVFVVGPIDKKELEQPMVDLAKKLGWPILADPLSGLRSYGALDEVVIDQYDAFLKEAEIIDKLTP 290 (578)
T ss_dssp HHHHHHHHHHTTTSCEEEEECSCCCTTCHHHHHHHHHHHTCCEEECGGGSTTSBSSCCSSEECCHHHHTTSHHHHHHTCC
T ss_pred hHHHHHHHHHhccCCeEEEECCCCChHHHHHHHHHHHhcCcEEEEecCCCCCCCCCCCccccccHHHHhcCccccccCCC
Confidence 46778888888765566667765432334567889999999876531 1 11110 0000000001111112246799
Q ss_pred CeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCC
Q psy11935 1052 DLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKV 1090 (1334)
Q Consensus 1052 d~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~ 1090 (1334)
|+||.+|+.+... +. ..+... ..+.++|.||+..
T Consensus 291 Dlvl~~G~~~~~~-~~-~~~~~~---~~~~~~i~id~d~ 324 (578)
T 3lq1_A 291 EVVIRFGSMPVSK-PL-KNWLEQ---LSDIRFYVVDPGA 324 (578)
T ss_dssp SEEEEESSCCSCH-HH-HHHHHH---CCSSEEEEECTTC
T ss_pred CEEEEeCCcccch-hH-HHHHhc---CCCCEEEEECCCC
Confidence 9999999975432 21 112221 2467999999874
No 213
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=65.14 E-value=64 Score=38.27 Aligned_cols=22 Identities=14% Similarity=0.102 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy11935 197 KLKETNHLLKEESKKRELMAKK 218 (1334)
Q Consensus 197 ~l~~l~~~~~~~~~~~~~~~~~ 218 (1334)
++++++.++.++..+++++..+
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~ 465 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAE 465 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444333333333
No 214
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=64.47 E-value=1.3 Score=51.35 Aligned_cols=17 Identities=29% Similarity=0.657 Sum_probs=14.4
Q ss_pred ccc--cccccccccccccc
Q psy11935 874 ELS--GNVIDLCPVGALTS 890 (1334)
Q Consensus 874 ~~c--g~cv~~CpvGAl~~ 890 (1334)
..| |.|+++||+|||..
T Consensus 209 ~~Ce~~~Cv~~CP~~AI~~ 227 (366)
T 3mm5_B 209 KTCEIPSTVAACPTGALKP 227 (366)
T ss_dssp HHCCHHHHHHTCTTCCEEE
T ss_pred ccccccchhccCCccceEe
Confidence 455 99999999999964
No 215
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=64.18 E-value=34 Score=36.07 Aligned_cols=70 Identities=10% Similarity=0.077 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh---HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy11935 12 AKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE---LREFYQTQLNNNQKAQDEIQTLLAKSASI 81 (1334)
Q Consensus 12 ~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~---~~er~~~~~~~~~~l~~~i~~l~~~~~~~ 81 (1334)
..+....+.+-.+++-+.-+..-...+|.++..+|++|... +-+|+..++++--.|+..+..++.+++-+
T Consensus 152 ~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~ 224 (242)
T 3uux_B 152 SALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFL 224 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 44666777888888889999999999999999999888777 66666666666666666555555554443
No 216
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=63.67 E-value=3 Score=39.10 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=21.1
Q ss_pred CCcEEEEE---CCEE--EEeCCCCcchhhh
Q psy11935 662 NEKFEVFI---DDKK--VMVDPGTTVLQPV 686 (1334)
Q Consensus 662 ~~~~~~~i---dg~~--~~v~~g~til~~~ 686 (1334)
+.|++|++ ||+. |.|++|+|||+..
T Consensus 3 ~~m~~v~~~~~~g~~~~~~~~~g~tlL~aa 32 (109)
T 2y5c_A 3 SDVVNVVFVDRSGQRIPVSGRVGDNVLHLA 32 (109)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTCBHHHHH
T ss_pred CCcEEEEEEcCCCCEEEEEECCCCcHHHHH
Confidence 46888887 7986 9999999999944
No 217
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=63.58 E-value=2 Score=34.62 Aligned_cols=17 Identities=18% Similarity=0.417 Sum_probs=14.6
Q ss_pred cccccccccccccccccc
Q psy11935 872 LSELSGNVIDLCPVGALT 889 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~ 889 (1334)
.|+.||.|+.+|| +++.
T Consensus 8 ~C~~C~~C~~~Cp-~~~~ 24 (59)
T 1dwl_A 8 ECIGCESCVELCP-EVFA 24 (59)
T ss_dssp CCSSCCGGGGTST-TTEE
T ss_pred hCcChhHHHHHCC-HHhe
Confidence 5899999999999 5764
No 218
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=63.36 E-value=7.7 Score=35.95 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=18.6
Q ss_pred EEE-EECC--EEEEeCCCCcchhhh
Q psy11935 665 FEV-FIDD--KKVMVDPGTTVLQPV 686 (1334)
Q Consensus 665 ~~~-~idg--~~~~v~~g~til~~~ 686 (1334)
|+| ..|| ++|+|++|+|||+..
T Consensus 3 v~~~~~~g~~~~~~~~~g~tlL~aa 27 (106)
T 1uwm_A 3 IIFIEHNGTRHEVEAKPGLTVMEAA 27 (106)
T ss_dssp EEEECTTCCEEEEECCTTSBHHHHH
T ss_pred EEEEeCCCCEEEEEECCCCcHHHHH
Confidence 566 4689 999999999999954
No 219
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=63.21 E-value=86 Score=28.22 Aligned_cols=32 Identities=16% Similarity=0.155 Sum_probs=15.0
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy11935 480 ADSLVRLQKAQ-DEIQTLLAKSASIKTELREFY 511 (1334)
Q Consensus 480 ~~~l~~~~~~~-~~l~~l~~~~~~l~~~i~~~~ 511 (1334)
+..|.+.+++. ++.-.|+++...|..++..+.
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILLAELEQLK 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444433 445555555555555554443
No 220
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=63.14 E-value=33 Score=29.69 Aligned_cols=52 Identities=15% Similarity=0.125 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhh
Q psy11935 517 NNVKEKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQISEKPGATKLML 570 (1334)
Q Consensus 517 ~~l~~~l~~~~~~~a~le~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ei~~~ 570 (1334)
+.+-.++++++.++..++-+..+....+.....+ +..++.++.....++..+
T Consensus 22 E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~E--l~~Lq~qLe~kd~ei~rL 73 (81)
T 3qh9_A 22 EELLQELRHLKIKVEELENERNQYEWKLKATKAE--VAQLQEQVALKDAEIERL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH--HHHHHHHHHhhHHHHHHH
Confidence 4455555555555555555555544444444444 444444444444444444
No 221
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=62.78 E-value=14 Score=45.28 Aligned_cols=108 Identities=22% Similarity=0.137 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhcc-CCEEEEeCCcC-CHHHHHHHHHHHHHhCCCccccCCCCCcchhhhh--hhhhccC-CCC--ccccc
Q psy11935 977 EDALIAVAQKLQT-SEVAGVVGSLA-DAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTD--LRANYLL-NNK--IAGAE 1049 (1334)
Q Consensus 977 deAl~~ia~~L~~-~~i~~~~g~~~-~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~--~~~~~~~-~~~--~~die 1049 (1334)
+++++.+++.|.. .+..+++|+.. .......+.+|++++|.+.+.+..+-...+.... +...+++ +.. ..-+.
T Consensus 194 ~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~~~~~~p~~~~G~~g~~~~~~~~~~l~ 273 (566)
T 1ozh_A 194 DDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTSTYQAAGAVNQDNFSRFAGRVGLFNNQAGDRLLQ 273 (566)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECGGGGSGGGHHHHHHHHHHHCCCEEECGGGTTTCCTTTCTTEEEECSSBTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCeEEEECCCcccccHHHHHHHHHHHHCCCEEEccccCCcCCCCChHhhcCCCcccCCHHHHHHHH
Confidence 4678888888887 67777777654 3344567889999999987654321110000000 1111222 112 23457
Q ss_pred ccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCCC
Q psy11935 1050 EADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVD 1091 (1334)
Q Consensus 1050 ~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~~ 1091 (1334)
+||+||.+|+++....+..+ ...+.+++.||+...
T Consensus 274 ~aDlvl~lG~~~~~~~~~~~-------~~~~~~~i~id~d~~ 308 (566)
T 1ozh_A 274 LADLVICIGYSPVEYEPAMW-------NSGNATLVHIDVLPA 308 (566)
T ss_dssp HCSEEEEESCCGGGSCGGGT-------CCSCSEEEEEESSCC
T ss_pred hCCEEEEECCCCCcCCcccc-------CCCCCcEEEEeCCHH
Confidence 89999999997543322111 123679999998643
No 222
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=61.13 E-value=67 Score=30.42 Aligned_cols=22 Identities=32% Similarity=0.282 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhhh
Q psy11935 31 NNQKAQDEIQTLLAKSASIKTE 52 (1334)
Q Consensus 31 ~~~~lq~~i~~l~~~ie~l~~~ 52 (1334)
.++.|+.++..+..+++.+..+
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E 37 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTE 37 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 223
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=60.56 E-value=32 Score=29.27 Aligned_cols=44 Identities=11% Similarity=0.045 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy11935 6 EIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASI 49 (1334)
Q Consensus 6 ~~~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l 49 (1334)
+++..+....+++......+..++.+++....++.++..++.++
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444444444444444443
No 224
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=60.50 E-value=84 Score=27.22 Aligned_cols=48 Identities=19% Similarity=0.217 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 175 AKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESV 222 (1334)
Q Consensus 175 ~~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 222 (1334)
.+++++.-++.++..+--+.+.+++.....+..++.++.....++..+
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL 73 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHH
Confidence 344444444444444444444455555555555554444444444444
No 225
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=60.16 E-value=2.9 Score=36.67 Aligned_cols=28 Identities=18% Similarity=0.269 Sum_probs=22.8
Q ss_pred EEEEECCEEEEeC--CCCcchhhhhhhcCC
Q psy11935 665 FEVFIDDKKVMVD--PGTTVLQPVAACAMP 692 (1334)
Q Consensus 665 ~~~~idg~~~~v~--~g~til~~~~ac~~~ 692 (1334)
++|+|||++++++ +|+||.++......+
T Consensus 1 M~I~vNGe~~e~~~~~~~Tl~~LL~~l~~~ 30 (78)
T 2k5p_A 1 MNLTVNGKPSTVDGAESLNVTELLSALKVA 30 (78)
T ss_dssp CEEEETTEEEECSSCSCEEHHHHHHHHTCS
T ss_pred CEEEECCEEEEcCCCCCCcHHHHHHHcCCC
Confidence 3799999999999 999999966555433
No 226
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=60.11 E-value=46 Score=28.82 Aligned_cols=54 Identities=22% Similarity=0.218 Sum_probs=28.1
Q ss_pred hhchhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 560 SEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMA 615 (1334)
Q Consensus 560 l~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~ 615 (1334)
+.....++..+ ..--+++......+..-+.+++.+...++..+..++.+..++.
T Consensus 20 ~~q~qaEl~sL--rrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 20 MDRAQAELNAL--KRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHH--HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444 4444444445555555555666666666666666555554443
No 227
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=59.83 E-value=1e+02 Score=35.65 Aligned_cols=8 Identities=13% Similarity=0.459 Sum_probs=3.6
Q ss_pred CCCCcccc
Q psy11935 382 SAGPMTSF 389 (1334)
Q Consensus 382 ~GGSiTGG 389 (1334)
+|-||+||
T Consensus 286 AGDsl~~~ 293 (409)
T 1m1j_C 286 AGDAFDGF 293 (409)
T ss_dssp TCCGGGCC
T ss_pred cccccccc
Confidence 34445443
No 228
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=58.86 E-value=91 Score=27.11 Aligned_cols=43 Identities=7% Similarity=0.140 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 166 ATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEE 208 (1334)
Q Consensus 166 ~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~ 208 (1334)
+...++.++.+-..++..+..++..+++...+-..++.+++.+
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l 53 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRA 53 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444433333
No 229
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=58.80 E-value=1.2e+02 Score=28.52 Aligned_cols=31 Identities=3% Similarity=0.028 Sum_probs=12.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy11935 55 EFYQTQLNNNQKAQDEIQTLLAKSASIKTEL 85 (1334)
Q Consensus 55 er~~~~~~~~~~l~~~i~~l~~~~~~~~~~l 85 (1334)
+|+...+...+..++.+.+..+-.+.+.+.+
T Consensus 27 qry~~eka~AE~A~~~La~~~~l~~~i~er~ 57 (119)
T 3etw_A 27 ARFNEERAQADAARQALAQNEQVYNELSQRA 57 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444333344433
No 230
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=58.70 E-value=49 Score=28.25 Aligned_cols=56 Identities=14% Similarity=0.074 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhh---HHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy11935 23 EFYQTQLNNNQKAQDEIQTLLAKSASIKTE---LREFYQTQLNNNQKAQDEIQTLLAKS 78 (1334)
Q Consensus 23 ~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~---~~er~~~~~~~~~~l~~~i~~l~~~~ 78 (1334)
.+..+|-.-.+.++---..+..+++.+.++ +++.+....+.+.+++.++.++++++
T Consensus 16 ~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 16 LENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333344444444444 55555555555555555555555543
No 231
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=58.18 E-value=7.3 Score=47.71 Aligned_cols=101 Identities=20% Similarity=0.172 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhcc-CCEEEEeCCcCCHHHHHHHHHHHHHhCCCccccCCC---CCcchhhhhhhhhccC-CC--Cccccc
Q psy11935 977 EDALIAVAQKLQT-SEVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYA---FPLEGAGTDLRANYLL-NN--KIAGAE 1049 (1334)
Q Consensus 977 deAl~~ia~~L~~-~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~---~~~~~~~~~~~~~~~~-~~--~~~die 1049 (1334)
+++++.+++.|.. .+..+++|+... .....+.+|++++|.+.+.+..+ ++... ..+...+|. +. ...-+.
T Consensus 188 ~~~i~~~~~~l~~A~rpvIl~G~g~~-~a~~~l~~lae~~~~Pv~~t~~gkg~~~~~h--p~~~G~~G~~~~~~~~~~~~ 264 (549)
T 3eya_A 188 EEELRKLAQLLRYSSNIALMCGSGCA-GAHKELVEFAGKIKAPIVHALRGKEHVEYDN--PYDVGMTGLIGFSSGFHTMM 264 (549)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECGGGT-TCHHHHHHHHHHHTCCEEECGGGHHHHSSSC--TTBCCCCSTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcEEEECCCch-HHHHHHHHHHHHhCCCEEECCccCcCCCCCC--cccccCCCCCCCHHHHHHHH
Confidence 5788888999987 777777776543 33456889999999987654321 11000 000001111 11 113468
Q ss_pred ccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCC
Q psy11935 1050 EADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKV 1090 (1334)
Q Consensus 1050 ~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~ 1090 (1334)
+||+||.+|+++.... +...+.++|.||+..
T Consensus 265 ~aDlvl~iG~~~~~~~----------~~~~~~~~i~id~d~ 295 (549)
T 3eya_A 265 NADTLVLLGTQFPYRA----------FYPTDAKIIQIDINP 295 (549)
T ss_dssp HCSEEEEESCCCCCGG----------GSCSSSEEEEEESCG
T ss_pred hCCEEEEECCCCCccc----------cCCCCCeEEEEeCCH
Confidence 9999999999864321 113467999998753
No 232
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=58.13 E-value=53 Score=33.28 Aligned_cols=142 Identities=13% Similarity=0.088 Sum_probs=59.5
Q ss_pred hcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy11935 161 SEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQAIHMITSDVTH 240 (1334)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr 240 (1334)
.+.++.+..+..+..+...+.++++....+++.+++++..++.+....+..+.+....+.-. .++...+-...
T Consensus 13 ~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~-----~DL~e~LTGl~-- 85 (190)
T 4emc_A 13 QQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVI-----KDLYEYLCNVR-- 85 (190)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHSEE--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHH-----HHHHHHccCcE--
Confidence 33444444555555555555555555555555555555555555444333332222222222 22222222211
Q ss_pred hhHHHHHhccCCC-C---CCccccc-------cccccccccccccccccccccccCCCcC---hHHHHHHhhhcCCCccc
Q psy11935 241 LHTSKESLATRQP-S---EQSLIDS-------TTDTNCPVTQQYVPSSNQQYAPSSNQQY---SIPTSNINQQYSMFSAD 306 (1334)
Q Consensus 241 l~~Vk~vL~~~~~-~---~~~gI~G-------~Vaeli~Vp~~Y~~G~alQnIVv~~e~~---Ak~aI~~LK~~~~GRaT 306 (1334)
|+.+=+.... + ...|.-| ++---+-|++...-++-+.++..-++.+ ++..+..||-.=+.-.|
T Consensus 86 ---V~~~~ed~~~~~FDc~Qtg~nG~~~~~~~tl~ykL~i~k~~~~~~e~~Y~P~l~~r~~ee~r~L~~~LPdYL~d~lt 162 (190)
T 4emc_A 86 ---VHKSYEDDSGLWFDISQGTHSGGSSDDYSIMDYKLGFVKGQAQVTEVIYAPVLKQRSTEELYSLQSKLPEYLFETLS 162 (190)
T ss_dssp ---CCCCCCCSSCEEEEEEESCCC-----CCCCCCEEEEEC-----CCEEEEEECCSSSCHHHHHHHHHHSCGGGGSCEE
T ss_pred ---EEEEEEcCCCeEEEEEecCCCCCcCCcceEEEEEEeeccCCCCCceEEEeccccccchHHHHHHHHhCcHHhhceee
Confidence 2222111111 0 1234444 3333344444333356666666665544 36677777777777777
Q ss_pred eechhhh
Q psy11935 307 STHMNIV 313 (1334)
Q Consensus 307 FLPl~~I 313 (1334)
| |.++.
T Consensus 163 F-P~~~l 168 (190)
T 4emc_A 163 F-PLSSL 168 (190)
T ss_dssp E-ETTHH
T ss_pred e-cHHHH
Confidence 6 44443
No 233
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A
Probab=58.00 E-value=1.9 Score=35.71 Aligned_cols=18 Identities=17% Similarity=0.194 Sum_probs=15.2
Q ss_pred ccccccccccccccccccc
Q psy11935 872 LSELSGNVIDLCPVGALTS 890 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~ 890 (1334)
.|+.||.|+.+||. |+..
T Consensus 10 ~C~~C~~C~~~Cp~-~~~~ 27 (66)
T 1sj1_A 10 TCIGDAICASLCPD-VFEM 27 (66)
T ss_dssp TCCCCCHHHHHCTT-TEEE
T ss_pred cCcCchHHHHhCCc-eEEE
Confidence 59999999999994 8743
No 234
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=57.93 E-value=1.6 Score=47.47 Aligned_cols=18 Identities=17% Similarity=0.194 Sum_probs=16.6
Q ss_pred cccccccccccccccccc
Q psy11935 872 LSELSGNVIDLCPVGALT 889 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~ 889 (1334)
.|+.||.|+++||++++.
T Consensus 150 ~Ci~Cg~C~~~CP~~~~~ 167 (241)
T 2bs2_B 150 RCIECGCCIAACGTKIMR 167 (241)
T ss_dssp TCCCCCHHHHTCHHHHHC
T ss_pred hhhccCcCcccCCCCccC
Confidence 599999999999999975
No 235
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=57.87 E-value=19 Score=44.51 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcc-CCEEEEeCCcCCHHHHHHHHHHHHHhCCCccccCC---CC-Cc-chhhhhhhhhccCCCCccccccc
Q psy11935 978 DALIAVAQKLQT-SEVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEY---AF-PL-EGAGTDLRANYLLNNKIAGAEEA 1051 (1334)
Q Consensus 978 eAl~~ia~~L~~-~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~---~~-~~-~~~~~~~~~~~~~~~~~~die~a 1051 (1334)
++++.+++.|.. .+..+++|+.........+.+|++++|.+.+.+.. .+ +. .+...+....+..+.....+-++
T Consensus 231 ~~i~~~~~~l~~A~rPvIl~G~g~~~~a~~~l~~lae~~~~PV~~t~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~ 310 (604)
T 2x7j_A 231 ESLSDVAEMLAEAEKGMIVCGELHSDADKENIIALSKALQYPILADPLSNLRNGVHDKSTVIDAYDSFLKDDELKRKLRP 310 (604)
T ss_dssp GGGHHHHHHHHHCSSEEEEECCCCCHHHHHHHHHHHHHHTCCEEECGGGTTTBSSSCCTTEECCHHHHTTSHHHHHHHCC
T ss_pred hhHHHHHHHHhhcCCeEEEECCCCcHHHHHHHHHHHHhcCceEEEcccccccccCCCCcceechHHHHhcCchhhhhcCC
Confidence 456777777776 77777887766555556789999999998765431 11 10 00000000001011111222238
Q ss_pred CeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCCC
Q psy11935 1052 DLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVD 1091 (1334)
Q Consensus 1052 d~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~~ 1091 (1334)
|+||.+|+.+..... ..+... ..+.+++.||+...
T Consensus 311 Dlvl~iG~~~~~~~~--~~~~~~---~~~~~~i~id~d~~ 345 (604)
T 2x7j_A 311 DVVIRFGPMPVSKPV--FLWLKD---DPTIQQIVIDEDGG 345 (604)
T ss_dssp SEEEEESSCCSCHHH--HHHHHH---CTTSEEEEECTTCC
T ss_pred CEEEEECCcCccHHH--HHHHhh---CCCCeEEEECCCCC
Confidence 999999998643321 112211 12679999998653
No 236
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=57.11 E-value=96 Score=32.52 Aligned_cols=38 Identities=11% Similarity=0.205 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy11935 15 ASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE 52 (1334)
Q Consensus 15 e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~ 52 (1334)
+.+...+..+...++...+.++.++.++....+..+..
T Consensus 138 ~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~ 175 (213)
T 1ik9_A 138 QAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETD 175 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444444
No 237
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=56.90 E-value=5 Score=37.40 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=20.4
Q ss_pred CCcEEEEE---CCE--EEEeCCCCcchhhh
Q psy11935 662 NEKFEVFI---DDK--KVMVDPGTTVLQPV 686 (1334)
Q Consensus 662 ~~~~~~~i---dg~--~~~v~~g~til~~~ 686 (1334)
..|++|+| ||+ +|++++|+|||+..
T Consensus 4 ~~m~~V~~~~~~g~~~~v~~~~g~tLL~aa 33 (108)
T 2bt6_A 4 GDKITVHFINRDGETLTTKGKIGDSLLDVV 33 (108)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTCBHHHHH
T ss_pred CceEEEEEECCCCCEEEEEECCCChHHHHH
Confidence 45788887 588 99999999999944
No 238
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=55.94 E-value=3e+02 Score=32.13 Aligned_cols=17 Identities=6% Similarity=-0.068 Sum_probs=8.5
Q ss_pred ccccccccccccc--cccc
Q psy11935 263 TDTNCPVTQQYVP--SSNQ 279 (1334)
Q Consensus 263 Vaeli~Vp~~Y~~--G~al 279 (1334)
+.+|..+.++--. ||.+
T Consensus 476 ~~~~~~~~~kt~~qgGg~~ 494 (551)
T 2b5u_A 476 LGDLKPGIPKTPKQNGGGK 494 (551)
T ss_dssp SCCCEEECCCSBCSSSSCB
T ss_pred CccccccccCCcccCCCcc
Confidence 4555555555444 4444
No 239
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=55.70 E-value=5.7 Score=33.89 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=20.5
Q ss_pred EEEEE-CCEEEEeCCCCcchhhhhh
Q psy11935 665 FEVFI-DDKKVMVDPGTTVLQPVAA 688 (1334)
Q Consensus 665 ~~~~i-dg~~~~v~~g~til~~~~a 688 (1334)
++|++ ||..+++|+|+|+++++.+
T Consensus 3 i~i~~p~g~~~~~~~g~T~~dla~~ 27 (73)
T 2kmm_A 3 VMVFTPKGEIKRLPQGATALDFAYS 27 (73)
T ss_dssp EEEECTTCCEEEECTTCBHHHHHHH
T ss_pred EEEEcCCCCEEEcCCCCcHHHHHHH
Confidence 67777 9999999999999996543
No 240
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=55.42 E-value=15 Score=45.29 Aligned_cols=109 Identities=13% Similarity=0.097 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhcc-CCEEEEeCCcCCHHHHHHHHHHHHHhCCCccccCCCCCcchhhhhh-hhhccCCCC---ccccccc
Q psy11935 977 EDALIAVAQKLQT-SEVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDL-RANYLLNNK---IAGAEEA 1051 (1334)
Q Consensus 977 deAl~~ia~~L~~-~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~die~a 1051 (1334)
+++++.+++.|.. .+..+++|+...... ..+.+|++++|.+.+.+..+....+....+ ...++...+ ..-+.+|
T Consensus 201 ~~~i~~~~~~l~~a~rpvIl~G~g~~~~~-~~l~~lae~~~~Pv~~t~~g~g~~~~~hp~~~G~~g~~~~~~~~~~l~~a 279 (590)
T 1ybh_A 201 DSHLEQIVRLISESKKPVLYVGGGCLNSS-DELGRFVELTGIPVASTLMGLGSYPADDELSLHMLGMHGTVYANYAVEHS 279 (590)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECGGGTTCH-HHHHHHHHHHCCCEEECTTTTTSSCTTSTTEEEECSTTSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCcEEEECcccccCH-HHHHHHHHHhCCCEEEchhhcCcCCCCCchhcCCcccccCHHHHHHHHhC
Confidence 4678888888887 777777776654333 678899999999876543211100000000 001111111 2336889
Q ss_pred CeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCCC
Q psy11935 1052 DLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVD 1091 (1334)
Q Consensus 1052 d~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~~ 1091 (1334)
|+||.+|+.+.. +.. ..+.. + ..+.+++.||+...
T Consensus 280 Dlvl~iG~~~~~--~~~-~~~~~-~-~~~~~~i~id~d~~ 314 (590)
T 1ybh_A 280 DLLLAFGVRFDD--RVT-GKLEA-F-ASRAKIVHIDIDSA 314 (590)
T ss_dssp SEEEEESCCCCH--HHH-SSGGG-T-TTTSEEEEEESCTT
T ss_pred CEEEEEcCCCCc--ccc-Ccccc-c-CCCCeEEEEECCHH
Confidence 999999997632 111 11111 1 23679999997643
No 241
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=54.97 E-value=8.3 Score=32.16 Aligned_cols=18 Identities=17% Similarity=0.338 Sum_probs=16.3
Q ss_pred EEEECCEEEEeCCCCcchh
Q psy11935 666 EVFIDDKKVMVDPGTTVLQ 684 (1334)
Q Consensus 666 ~~~idg~~~~v~~g~til~ 684 (1334)
+|+|||+++++ +|.||.+
T Consensus 1 ~i~vNg~~~~~-~~~tv~~ 18 (64)
T 2cu3_A 1 MVWLNGEPRPL-EGKTLKE 18 (64)
T ss_dssp CEEETTEEECC-TTCCHHH
T ss_pred CEEECCEEEEc-CCCcHHH
Confidence 37899999999 9999988
No 242
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=54.60 E-value=2.6 Score=45.97 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=17.7
Q ss_pred ccccccccccccccccccccc
Q psy11935 870 LFLSELSGNVIDLCPVGALTS 890 (1334)
Q Consensus 870 ~~~~~~cg~cv~~CpvGAl~~ 890 (1334)
...|+.||.|+.+||++++..
T Consensus 155 ~~~Ci~CG~C~~~CP~~~~~~ 175 (252)
T 2h88_B 155 LYECILCACCSTSCPSYWWNG 175 (252)
T ss_dssp TTTCCCCCTTGGGCHHHHHHT
T ss_pred HHhchhhCcchhhCCCCccCC
Confidence 346999999999999998643
No 243
>1q16_A Respiratory nitrate reductase 1 alpha chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 3ir7_A* 1y5i_A* 1siw_A* 1y4z_A* 1r27_A* 1y5l_A* 1y5n_A* 3ir6_A* 3ir5_A* 3egw_A*
Probab=54.43 E-value=58 Score=43.52 Aligned_cols=51 Identities=12% Similarity=-0.023 Sum_probs=39.5
Q ss_pred CCcEEEEECCChhhh-------HHhhcCCCceEEEEcCCCChhhccccEEecCCCCCC
Q psy11935 1192 PPKVLFLLGADEGSI-------SRDDVGKDCFIIYQGHHGDHGASIADAILPGAAYTE 1242 (1334)
Q Consensus 1192 ~ik~l~~~g~np~~~-------~~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~E 1242 (1334)
..+.++++|+||... ..++..+-.-||++|+..++|+.+||..||...-+.
T Consensus 246 ~ad~iv~wGsN~~~t~~~~~~~l~~ar~~G~KvVvIDPr~t~ta~~AD~wl~irPGTD 303 (1247)
T 1q16_A 246 NSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAVTPDYAEIAKLCDLWLAPKQGTD 303 (1247)
T ss_dssp GCSEEEEESCCHHHHSGGGHHHHHHHGGGTCEEEEECSSCCHHHHHSSEEECCCTTCH
T ss_pred hCCEEEEECCCchhccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhCCeEEeeCCCcH
Confidence 478999999998431 233444445699999999999999999999876554
No 244
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=54.30 E-value=85 Score=29.69 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy11935 493 IQTLLAKSASIKTELREFY 511 (1334)
Q Consensus 493 l~~l~~~~~~l~~~i~~~~ 511 (1334)
|..|..++..++.+++.+.
T Consensus 17 Ie~Lkreie~lk~ele~l~ 35 (120)
T 3i00_A 17 IERLYREISGLKAQLENMK 35 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 245
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=53.73 E-value=3e+02 Score=31.44 Aligned_cols=22 Identities=5% Similarity=-0.055 Sum_probs=0.0
Q ss_pred cccccccc----cccccccccCCCcC
Q psy11935 268 PVTQQYVP----SSNQQYAPSSNQQY 289 (1334)
Q Consensus 268 ~Vp~~Y~~----G~alQnIVv~~e~~ 289 (1334)
+-|..|.. ++..+|..+.....
T Consensus 331 s~~g~y~LSv~~~~~v~H~~I~~~~~ 356 (373)
T 3hhm_B 331 SKQGCYACSVVVDGEVKHCVINKTAT 356 (373)
T ss_dssp --------------------------
T ss_pred CCCCCEEEEEEECCeEEEEEEEEcCC
Confidence 34555655 66666666654433
No 246
>3l51_B Structural maintenance of chromosomes protein 4; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus} SCOP: d.215.1.0
Probab=53.12 E-value=9.7 Score=38.53 Aligned_cols=54 Identities=9% Similarity=-0.053 Sum_probs=41.2
Q ss_pred ccCCeEeeeccccccchhhhHHHHhhhhch----hhhHHHHHH---HHhhCC-CCCceEecc
Q psy11935 323 DMRKYIEMQYSMFSADSTHMNIVERDIPNS----ADDMRKYIE---MLLEKP-PGNPVSDLE 376 (1334)
Q Consensus 323 ~~~G~iG~A~dLV~~d~~~~~Ii~~LLG~t----~e~ld~A~~---iak~~~-~r~RIVTLd 376 (1334)
..+|+.|...+|++++++|...++..||+. |+|.+.|.. ..|+-+ .|.-++-|+
T Consensus 15 ~~~Gv~G~v~dLi~v~~~y~~Aie~alg~l~~iVVd~~~~A~~~i~~Lk~~~~GRatflpL~ 76 (166)
T 3l51_B 15 RIPGIYGRLGDLGAIDEKYDIAISSCCHALDYIVVDSIDTAQECVNFLKKHNIGIATFIGLD 76 (166)
T ss_dssp SSTTEEEEGGGSCBCCGGGHHHHHHHCGGGGSEEESCHHHHHHHHHHHHHTTCCCCCEEEGG
T ss_pred CCCCceEEHHHheeeCHHHHHHHHHHHhhCceEEECCHHHHHHHHHHHHHcCCCeEEEEECc
Confidence 568999999999999999999999999964 888876644 333322 256666665
No 247
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=52.68 E-value=1.4e+02 Score=27.52 Aligned_cols=35 Identities=9% Similarity=0.043 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 9 TLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLL 43 (1334)
Q Consensus 9 ~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~ 43 (1334)
.+.++..+++...+....++......|+.++.++.
T Consensus 8 RK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 8 RKNAEVTKQVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444443
No 248
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=52.47 E-value=49 Score=24.80 Aligned_cols=36 Identities=25% Similarity=0.230 Sum_probs=23.4
Q ss_pred hhhHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 402 PALYTKTVRSVTLKISKEKIESLERNLQTETQRSRKLE 439 (1334)
Q Consensus 402 k~ei~~L~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~ 439 (1334)
|.|+.+|+... ++++.+...|++.+..++.+-.-++
T Consensus 2 KaYl~eLE~r~--k~le~~naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 2 SAYLSELENRV--KDLENKNSELEERLSTLQNENQMLR 37 (42)
T ss_dssp CHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 56778888777 7766666666666666655544333
No 249
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=52.43 E-value=2.3 Score=49.43 Aligned_cols=15 Identities=20% Similarity=0.437 Sum_probs=13.3
Q ss_pred ccccccccccccccc
Q psy11935 876 SGNVIDLCPVGALTS 890 (1334)
Q Consensus 876 cg~cv~~CpvGAl~~ 890 (1334)
|+.|+++||||||.-
T Consensus 224 ~~~cv~~CPt~AI~~ 238 (386)
T 3or1_B 224 IPLAVAACPTAAVKP 238 (386)
T ss_dssp HHHHHHHCTTCCEEE
T ss_pred chhhhhhCchhhccc
Confidence 599999999999954
No 250
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=52.38 E-value=8 Score=47.93 Aligned_cols=104 Identities=18% Similarity=0.095 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhcc-CCEEEEeCCcCCHHHHHHHHHHHHHhCCCccccCCC---CCcchhhhhhhhhccC-CC--Cccccc
Q psy11935 977 EDALIAVAQKLQT-SEVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYA---FPLEGAGTDLRANYLL-NN--KIAGAE 1049 (1334)
Q Consensus 977 deAl~~ia~~L~~-~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~---~~~~~~~~~~~~~~~~-~~--~~~die 1049 (1334)
.++++.+++.|+. .+..+++|+.. ......+.+|++++|.+.+.+..+ ++... ..+...++. +. ...-+.
T Consensus 199 ~~~i~~~~~~l~~A~rPvIl~G~g~-~~a~~~l~~lae~~~~PV~~t~~gkg~~~~~h--p~~~G~~g~~~~~~~~~~l~ 275 (603)
T 4feg_A 199 VQAVTRLTQTLLAAERPLIYYGIGA-RKAGKELEQLSKTLKIPLMSTYPAKGIVADRY--PAYLGSANRVAQKPANEALA 275 (603)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECGGG-TTCHHHHHHHHHHHTCCEEECGGGTTSSCTTC--TTBCCCCSSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEECCCc-hhHHHHHHHHHHHHCCCEEEcCccccCCCCCC--hhhcccCcccCcHHHHHHHH
Confidence 4678888888877 77777777655 234456889999999987654321 11100 000011121 11 123468
Q ss_pred ccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCC
Q psy11935 1050 EADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKV 1090 (1334)
Q Consensus 1050 ~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~ 1090 (1334)
+||+||.+|+.+... +. +. .+ ..++++|.||+..
T Consensus 276 ~aDlvl~iG~~~~~~-~~----~~-~~-~~~~~~i~id~d~ 309 (603)
T 4feg_A 276 QADVVLFVGNNYPFA-EV----SK-AF-KNTRYFLQIDIDP 309 (603)
T ss_dssp HCSEEEEESCCCTTT-TT----TT-TT-TTCSEEEEEESCG
T ss_pred hCCEEEEECCCCCcc-cc----cc-cC-CCCCeEEEEeCCH
Confidence 999999999987532 11 11 11 2467999999763
No 251
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=52.37 E-value=1.5e+02 Score=27.59 Aligned_cols=18 Identities=6% Similarity=-0.289 Sum_probs=6.6
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy11935 63 NNQKAQDEIQTLLAKSAS 80 (1334)
Q Consensus 63 ~~~~l~~~i~~l~~~~~~ 80 (1334)
....|..++...+..+..
T Consensus 46 qV~~L~~~~q~sE~~L~~ 63 (112)
T 1x79_B 46 QISALVLRAQASEILLEE 63 (112)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 252
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=52.35 E-value=51 Score=29.40 Aligned_cols=26 Identities=4% Similarity=0.029 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 603 LLKEESKKRELMAKKVESVMQSQLQQA 629 (1334)
Q Consensus 603 ~l~~~~~~~~~l~~~i~~~~~~~w~~~ 629 (1334)
.+..+..++..+..++..++ ..|+-+
T Consensus 57 ~~~~l~~~l~~~e~eLe~~~-erWeeL 82 (89)
T 2lw1_A 57 QTQKVLADMAAAEQELEQAF-ERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 45555666666777777777 788754
No 253
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=51.45 E-value=3.5e+02 Score=31.66 Aligned_cols=13 Identities=31% Similarity=0.199 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q psy11935 173 FKAKCEVYEAENK 185 (1334)
Q Consensus 173 ~~~~l~~l~~~l~ 185 (1334)
+..+..+++.-+.
T Consensus 204 F~~Da~EaesWL~ 216 (450)
T 3r6n_A 204 FFEEAQSTEAYLK 216 (450)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444333
No 254
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=50.97 E-value=1e+02 Score=27.26 Aligned_cols=31 Identities=3% Similarity=-0.081 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhHHHHHHHHH
Q psy11935 125 TIVENAAKQLKQISENEFKQKEKTIVENAAK 155 (1334)
Q Consensus 125 ~i~~~~~~~ie~~~~~~~l~n~~~~~~~~~~ 155 (1334)
++.....+|-++++-+..+..++..+.+-++
T Consensus 50 e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 50 RMQQQLDEYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 3444455666777777777777777666655
No 255
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=50.69 E-value=1.1e+02 Score=29.94 Aligned_cols=41 Identities=22% Similarity=0.071 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Q psy11935 8 QTLLAKSASIKTELREFYQTQLNNNQKA---QDEIQTLLAKSAS 48 (1334)
Q Consensus 8 ~~~~~~~e~~~~~~~~~l~~l~~~~~~l---q~~i~~l~~~ie~ 48 (1334)
+.++..+...++.++.++..+..+++.+ +..+.++...++.
T Consensus 8 ~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~ 51 (151)
T 2zdi_C 8 NKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLEN 51 (151)
T ss_dssp TTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666777777777777777 6666665555444
No 256
>3fld_A Protein TRAI, DNA helicase I; novel alpha/beta core domain, alternative initiation, ATP- binding, conjugation, DNA-binding, hydrolase; 2.40A {Escherichia coli k-12}
Probab=50.67 E-value=8.2 Score=37.18 Aligned_cols=43 Identities=21% Similarity=0.294 Sum_probs=35.9
Q ss_pred hhhhch--hhhHHHHHHHHhhCCCCCceEecccccc--cCCCCccccc
Q psy11935 347 RDIPNS--ADDMRKYIEMLLEKPPGNPVSDLEAEVK--DSAGPMTSFL 390 (1334)
Q Consensus 347 ~LLG~t--~e~ld~A~~iak~~~~r~RIVTLdGdvi--n~GGSiTGGs 390 (1334)
+-=|.| +.||+.|+++|+.-|..=-||-+.|+-. || +.||||-
T Consensus 102 SrNGeTllA~dl~~al~~Ar~~P~sGVvv~~~G~~~p~N~-~~~TGg~ 148 (153)
T 3fld_A 102 SRNGESLLADNMQDGVRIARDNPDSGVVVRIAGEGRPWNP-GAITGGR 148 (153)
T ss_dssp CSSSEEEEESSHHHHHHHHHHCTTSEEEEESSCSSCCSCG-GGTTSCC
T ss_pred ccCCcEEEecCHHHHHHHHHhCCCCceEEEecCCCCCCCc-ccccCCc
Confidence 334777 9999999999999999999999999865 45 4599995
No 257
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=50.55 E-value=1.4e+02 Score=26.90 Aligned_cols=54 Identities=7% Similarity=0.027 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhh-HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy11935 28 QLNNNQKAQDEIQTLLAKSASIKTE-LREFYQTQLNNNQKAQDEIQTLLAKSASI 81 (1334)
Q Consensus 28 l~~~~~~lq~~i~~l~~~ie~l~~~-~~er~~~~~~~~~~l~~~i~~l~~~~~~~ 81 (1334)
.+.+...+..++......+..+.+. .+..+......++++.+-|.+..-++..+
T Consensus 6 YE~df~~~~~~i~~~l~~~~~~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 6 YESDFKTTLEQAKASLAEAPSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444444444444444444433333 44444444444444444444444444443
No 258
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=50.33 E-value=70 Score=28.33 Aligned_cols=43 Identities=5% Similarity=0.033 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 580 EAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVM 622 (1334)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~ 622 (1334)
+..+..++.++.++..+....-..+..+-.-+..++.+|...|
T Consensus 34 q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYR 76 (86)
T 1x8y_A 34 RRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYR 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3334444444444444444444444445555555555666555
No 259
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=50.13 E-value=15 Score=45.05 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=18.9
Q ss_pred EEEEECCEEEEeCCCCcchhhhh
Q psy11935 665 FEVFIDDKKVMVDPGTTVLQPVA 687 (1334)
Q Consensus 665 ~~~~idg~~~~v~~g~til~~~~ 687 (1334)
|++.-+|++++|++|+|||+...
T Consensus 6 V~~~~sg~~v~v~~G~tLLeAa~ 28 (631)
T 3zyy_X 6 VLFKPDQKEVAISENTNLMEALN 28 (631)
T ss_dssp EEEETTTEEEEECTTSCHHHHHH
T ss_pred EEEecCCeEEEECCCCcHHHHHH
Confidence 55556899999999999999543
No 260
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=49.29 E-value=1.4e+02 Score=26.28 Aligned_cols=31 Identities=3% Similarity=-0.056 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhHHHHHHHHH
Q psy11935 125 TIVENAAKQLKQISENEFKQKEKTIVENAAK 155 (1334)
Q Consensus 125 ~i~~~~~~~ie~~~~~~~l~n~~~~~~~~~~ 155 (1334)
++.....+|-++++-+..+..++..+.+-++
T Consensus 48 e~~~q~~EYq~LlnvK~~Ld~EIatYRkLLE 78 (84)
T 1gk4_A 48 EMARHLREYQDLLNVKMALDIEIATYRKLLE 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 3444555667777777777777777666555
No 261
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=49.17 E-value=1.6e+02 Score=26.90 Aligned_cols=43 Identities=19% Similarity=0.167 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 180 YEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESV 222 (1334)
Q Consensus 180 l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 222 (1334)
+..+...+..+++.+...+++.+..+..++++..++..+++.+
T Consensus 21 LDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~ 63 (103)
T 4h22_A 21 LDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFERE 63 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555554444444444333
No 262
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=47.69 E-value=21 Score=43.79 Aligned_cols=111 Identities=22% Similarity=0.203 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHhcc-CCEEEEeCCcCC-HHHHHHHHHHHHHhCCCccccCCC---CCcc-hhhhhhh-----hhccCCC
Q psy11935 975 EWEDALIAVAQKLQT-SEVAGVVGSLAD-AEAMVALKDLLNKLGSEDLYTEYA---FPLE-GAGTDLR-----ANYLLNN 1043 (1334)
Q Consensus 975 SWdeAl~~ia~~L~~-~~i~~~~g~~~~-~e~~~~~~~l~~~lGs~~~~~~~~---~~~~-~~~~~~~-----~~~~~~~ 1043 (1334)
...++++.+++.|.. .+..+++|+... ......+.+|++++|.+.+.+..+ ++.. +...+.. ..++...
T Consensus 201 ~~~~~v~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~hp~~~G~~~~~~~g~~~~~~ 280 (573)
T 2iht_A 201 GWQKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYIAKGVLPVGHELNYGAVTGYMDGILNFPA 280 (573)
T ss_dssp THHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEECSTTTTSSCTTCTTEEEECCTTHHHHHTSCH
T ss_pred CCHHHHHHHHHHHHcCCCeEEEECCCccccCHHHHHHHHHHHHCCeEEEecccCccCCCCCcCccCccccccCCCCCCHH
Confidence 456788888888887 777777775432 223456889999999987654322 1110 1000000 0111111
Q ss_pred CcccccccCeEEEEcCC-ccccchhHHHHHHHHHhhCCCeEEEEccCCC
Q psy11935 1044 KIAGAEEADLILLIGTN-PRFEAPLFNARIRKGYLTNELDVAYIGPKVD 1091 (1334)
Q Consensus 1044 ~~~die~ad~Il~~G~n-p~~~~p~~~~rir~a~~~~g~kiivIdp~~~ 1091 (1334)
...-+.++|+||.+|+. +..-.+.. +. ...+.+++.||+...
T Consensus 281 ~~~~l~~aDlvl~iG~~~~~~~~~~~---~~---~~~~~~~i~id~d~~ 323 (573)
T 2iht_A 281 LQTMFAPVDLVLTVGYDYAEDLRPSM---WQ---KGIEKKTVRISPTVN 323 (573)
T ss_dssp HHHHHTTCCEEEEETCCGGGCCCHHH---HC---CSSCCEEEEEESSCC
T ss_pred HHHHHhhCCEEEEECCCccccccccc---cC---CCCCCeEEEEeCCHH
Confidence 11235789999999998 53333211 11 114679999997643
No 263
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=47.67 E-value=44 Score=29.10 Aligned_cols=10 Identities=10% Similarity=0.029 Sum_probs=3.5
Q ss_pred HHHHHHHHHH
Q psy11935 175 AKCEVYEAEN 184 (1334)
Q Consensus 175 ~~l~~l~~~l 184 (1334)
..+.-++..+
T Consensus 21 ~klAfqE~tI 30 (78)
T 3efg_A 21 TRLSFQEQAL 30 (78)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 264
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=47.45 E-value=80 Score=28.66 Aligned_cols=59 Identities=17% Similarity=0.244 Sum_probs=23.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHHhhH
Q psy11935 415 KISKEKIESLERNLQTETQRSRKLEEELQDTRQTCE--EVVRKEVSIVTVTLFLERLRSSH 473 (1334)
Q Consensus 415 ~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~--e~~~~~~~~~~l~~~~~~~~~~~ 473 (1334)
++++.++...+.++....+++++-+...+.--.+++ -+.+....+..++..+.++++.+
T Consensus 38 eeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqL 98 (107)
T 2k48_A 38 QELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQL 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444333333322222222 23333333444444444444444
No 265
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=46.95 E-value=5.4 Score=34.05 Aligned_cols=25 Identities=0% Similarity=-0.040 Sum_probs=21.4
Q ss_pred CcEEEEECCEE----EEeCCCCcchhhhh
Q psy11935 663 EKFEVFIDDKK----VMVDPGTTVLQPVA 687 (1334)
Q Consensus 663 ~~~~~~idg~~----~~v~~g~til~~~~ 687 (1334)
.+++|+|||++ +++++|+||.++..
T Consensus 3 ~~m~i~vNg~~~~~~~~~~~~~tv~~Ll~ 31 (70)
T 1ryj_A 3 IGMKFTVITDDGKKILESGAPRRIKDVLG 31 (70)
T ss_dssp CCEEEEEEETTEEEEEEESSCCBHHHHHH
T ss_pred eeEEEEEeCccCceeEECCCCCcHHHHHH
Confidence 45799999999 99999999988543
No 266
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=45.51 E-value=1.9e+02 Score=26.75 Aligned_cols=58 Identities=16% Similarity=0.093 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhhHHHHHHHHH
Q psy11935 16 SIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQT 73 (1334)
Q Consensus 16 ~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~~~er~~~~~~~~~~l~~~i~~ 73 (1334)
.+..+..+++.........+.....++..++++++.+..++.......++.++.+|..
T Consensus 8 RK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~ 65 (107)
T 2no2_A 8 RKNAEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELAT 65 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555533333333333333333333333
No 267
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A {Helicobacter pylori} PDB: 4g0h_A
Probab=45.43 E-value=4.3e+02 Score=30.90 Aligned_cols=11 Identities=9% Similarity=0.178 Sum_probs=5.4
Q ss_pred hHHHHHHHHHH
Q psy11935 146 EKTIVENAAKQ 156 (1334)
Q Consensus 146 ~~~~~~~~~~~ 156 (1334)
.++.++...++
T Consensus 723 tlk~L~~SvKD 733 (876)
T 4dvy_P 723 TLKALKGSVKD 733 (876)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhHHHH
Confidence 34455555553
No 268
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=45.27 E-value=20 Score=38.07 Aligned_cols=57 Identities=9% Similarity=0.007 Sum_probs=41.3
Q ss_pred cEEEEE-CCEEEEeCCCCcchhhhhh--------------------hcCCCCCCCEEE---cCCHHHHHHHHHHHHHHHH
Q psy11935 664 KFEVFI-DDKKVMVDPGTTVLQPVAA--------------------CAMPVMKGWRVK---TNSEMTRRAREGVMEFLLV 719 (1334)
Q Consensus 664 ~~~~~i-dg~~~~v~~g~til~~~~a--------------------c~~~~~~gm~v~---t~s~~~~~~r~~~~~~ll~ 719 (1334)
|++|++ ||..+++|.|+|+++++.+ ..+|+.+|..|. .+++.-...++-...+||.
T Consensus 1 ~i~I~~p~G~~~~~~~g~T~~dia~~i~~~l~~~~vaakvNg~l~dL~~~l~~~~~ve~it~~~~~g~~~~~HS~~HlL~ 80 (224)
T 1tke_A 1 MPVITLPDGSQRHYDHAVSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSIITAKDEEGLEIIRHSCAHLLG 80 (224)
T ss_dssp CCEEECTTSCEEECSSCBCHHHHHHHHCHHHHHHCCEEEETTEEEETTCCBCSCEEEEEECTTSHHHHHHHHHHHHHHHH
T ss_pred CeEEEeCCCCEEEecCCCCHHHHHHHHhhhcccceEEEEECCEEeccceEcCCCCeEEEEecCchhHHHHHHHHHHHHHH
Confidence 578888 8999999999999992211 234666776443 3678777888777877776
Q ss_pred h
Q psy11935 720 N 720 (1334)
Q Consensus 720 ~ 720 (1334)
-
T Consensus 81 ~ 81 (224)
T 1tke_A 81 H 81 (224)
T ss_dssp H
T ss_pred H
Confidence 5
No 269
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=45.23 E-value=43 Score=33.99 Aligned_cols=39 Identities=21% Similarity=0.345 Sum_probs=28.0
Q ss_pred HHHH-HHHHhcCCCcEEEEcCCcccHHHHHHHHHHHHHhhcCC
Q psy11935 1113 SHPF-SKKLSAAKKPLIVVGADISDGAAVLALVQQLAAKVTCE 1154 (1334)
Q Consensus 1113 ~~~~-A~~l~~a~~~~ii~G~~~~~g~~~~~al~~l~~~~g~~ 1154 (1334)
+.++ ++.+.+|++|+|++|. +... .....+..++.. |-|
T Consensus 24 i~~a~a~lI~~AkRPvIl~Gg-v~~~-~A~~eL~~~ae~-~iP 63 (174)
T 1ytl_A 24 KGKPVANMIKKAKRPLLIVGP-DMTD-EMFERVKKFVEK-DIT 63 (174)
T ss_dssp CHHHHHHHHHHCSSEEEEECS-CCCH-HHHHHHHHHHTS-SSE
T ss_pred HHHHHHHHHHcCCCCEEEECC-CCCc-cHHHHHHHHHHc-CCC
Confidence 5677 9999999999999999 8322 233445667766 654
No 270
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=44.96 E-value=67 Score=26.88 Aligned_cols=50 Identities=16% Similarity=0.112 Sum_probs=20.5
Q ss_pred HHHHHHHhhchhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 553 AKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLL 604 (1334)
Q Consensus 553 ~~~~~~~l~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 604 (1334)
+..+++.+..++.+|..+ +..+..-....+.+..++-.+..+-.-|++++
T Consensus 20 l~~Lr~eL~~Ke~eI~~L--~e~i~lk~kd~ErLNDEiislNIENNlL~~rl 69 (75)
T 3a7o_A 20 LAILQKELKSKEQEIRRL--KEVIALKNKNTERLNDELISGTIENNVLQQKL 69 (75)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHhcccHHHhhHHHHHhHHHHHHHHHHH
Confidence 334444444444444444 44333333333333334333333333333333
No 271
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=44.64 E-value=1.5e+02 Score=25.33 Aligned_cols=20 Identities=10% Similarity=0.157 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11935 179 VYEAENKKLKAELTQRDIKL 198 (1334)
Q Consensus 179 ~l~~~l~~~~~~l~~~~~~l 198 (1334)
.++.++..++..+++...+-
T Consensus 18 ~Le~~v~~le~~Le~s~~~q 37 (72)
T 3cve_A 18 DLEGQLSEMEQRLEKSQSEQ 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444443333333333
No 272
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=44.36 E-value=1.2e+02 Score=30.72 Aligned_cols=35 Identities=14% Similarity=0.061 Sum_probs=10.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 53 LREFYQTQLNNNQKAQDEIQTLLAKSASIKTELRE 87 (1334)
Q Consensus 53 ~~er~~~~~~~~~~l~~~i~~l~~~~~~~~~~l~~ 87 (1334)
.++++.+...-++.|..+...+..+++....+++.
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~ 45 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQ 45 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433333333
No 273
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=44.34 E-value=1.7e+02 Score=26.02 Aligned_cols=6 Identities=17% Similarity=0.401 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy11935 217 KKVESV 222 (1334)
Q Consensus 217 ~~~~~~ 222 (1334)
.++..+
T Consensus 74 gEI~~L 79 (99)
T 3ni0_A 74 NEVTKL 79 (99)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 274
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=44.28 E-value=10 Score=37.96 Aligned_cols=55 Identities=15% Similarity=0.183 Sum_probs=33.5
Q ss_pred cccceeecCCCcccccccccCC--CCcEEEcCCHHHH-HHHHHHHHHHhhCCCCCCccc
Q psy11935 778 VFLQSINRHWIGPVAACAMPVM--KGWRVKTNSEMTR-RAREGVMEFLLVNHPLDCPIC 833 (1334)
Q Consensus 778 c~~~~v~~~~~~~~~aC~~~v~--~gm~i~t~s~~~r-~~r~~~~~~ll~~h~~~C~~C 833 (1334)
|..|.|..++ .|+.||.+++. +|+.|.|--.-.. ..-.-+-+-+...|...|+.|
T Consensus 47 CGACtV~vdG-~~v~sC~~~~~~~~G~~I~TiEgl~~~~~l~pvq~af~~~~~~QCGfC 104 (160)
T 3hrd_D 47 CGACTVIFNG-DPVTTCCMLAGQADESTIITLEGVAEDGKPSLLQQCFLEAGAVQCGYC 104 (160)
T ss_dssp SCTTEEEETT-EEEEGGGSBGGGGTTEEEECGGGTSBTTBCCHHHHHHHHHTCCSSCSS
T ss_pred CCCCEEEECC-EEEEchhhhhhhhCCCceEEeCCCCCCCccCHHHHHHHHcCCCcCCcc
Confidence 3333444433 68999999996 8999998100000 000123345667788999999
No 275
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=43.67 E-value=1.8e+02 Score=26.56 Aligned_cols=83 Identities=13% Similarity=0.195 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH-hhh-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy11935 23 EFYQTQLNNNQKAQDEIQTLLAKSASI-KTE-LREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQLNNNVKEK 100 (1334)
Q Consensus 23 ~~l~~l~~~~~~lq~~i~~l~~~ie~l-~~~-~~er~~~~~~~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 100 (1334)
.-+...+++...+..++......+... .+. .+..+......++++++-|.+.+-++..+-.... .. +..+
T Consensus 15 elFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R-------~~-~~~k 86 (102)
T 2qyw_A 15 EHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFR-------NP-MMSK 86 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHH-------HH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH-------HH-HHHH
Confidence 334455555555555554444444322 212 3334444444444444444433333333221111 12 4445
Q ss_pred HHHHHHHHHHHHH
Q psy11935 101 LKEFQTQLDSAEL 113 (1334)
Q Consensus 101 ~~~~~~~l~~~~~ 113 (1334)
+...+.+|+.++.
T Consensus 87 lr~Yk~dL~~lk~ 99 (102)
T 2qyw_A 87 LRNYRKDLAKLHR 99 (102)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5555555554443
No 276
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=43.57 E-value=1.1e+02 Score=25.88 Aligned_cols=61 Identities=10% Similarity=0.072 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh---HHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy11935 20 ELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE---LREFYQTQLNNNQKAQDEIQTLLAKSAS 80 (1334)
Q Consensus 20 ~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~---~~er~~~~~~~~~~l~~~i~~l~~~~~~ 80 (1334)
.+-.+|+-+.-+.+-...+|.++.-+++++.+. .=.|+..++++-..|+..+..++.+++.
T Consensus 4 ~~~~~Leml~IrKnma~sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle~ 67 (72)
T 2xu6_A 4 TLVNSLEFLNIQKNSTMSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLDF 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 445567777777788888888888888877776 5556665555555555555555555433
No 277
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=43.44 E-value=1.3e+02 Score=26.36 Aligned_cols=24 Identities=13% Similarity=0.140 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy11935 25 YQTQLNNNQKAQDEIQTLLAKSAS 48 (1334)
Q Consensus 25 l~~l~~~~~~lq~~i~~l~~~ie~ 48 (1334)
+-.+..+++.++.++.++...+|.
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~ 45 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQE 45 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 333444444444444444444433
No 278
>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1
Probab=43.24 E-value=21 Score=46.80 Aligned_cols=51 Identities=12% Similarity=0.149 Sum_probs=39.9
Q ss_pred CCcEEEEECCChhhh-------HHhhcCCCceEEEEcCCCChhhccccEEecCCCCCC
Q psy11935 1192 PPKVLFLLGADEGSI-------SRDDVGKDCFIIYQGHHGDHGASIADAILPGAAYTE 1242 (1334)
Q Consensus 1192 ~ik~l~~~g~np~~~-------~~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~E 1242 (1334)
..+.++++|+||... ..++..+-.-+|++|+..|.|+..||+.||...-+.
T Consensus 184 ~ad~il~~G~N~~~~~p~~~~~~~~a~~~G~klivIDPr~t~ta~~AD~~l~irPGTD 241 (977)
T 1h0h_A 184 NSDVILMMGSNPAENHPISFKWVMRAKDKGATLIHVDPRYTRTSTKCDLYAPLRSGSD 241 (977)
T ss_dssp GCSEEEEESCCHHHHSTTHHHHHHHHHHTTCEEEEECSSCCTTGGGCSEEECCCTTCH
T ss_pred hCCEEEEECCChHHhCcHHHHHHHHHHHCCCeEEEECCCCCchhHHhCeeeccCCCch
Confidence 378999999999431 233444555799999999999999999999987643
No 279
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=43.19 E-value=16 Score=44.75 Aligned_cols=109 Identities=19% Similarity=0.123 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhcc-CCEEEEeCCcCC-HHHHHHHHHHHHHhCCCccccCCC---CCcc-hhhhhh-hhhccCCCCccccc
Q psy11935 977 EDALIAVAQKLQT-SEVAGVVGSLAD-AEAMVALKDLLNKLGSEDLYTEYA---FPLE-GAGTDL-RANYLLNNKIAGAE 1049 (1334)
Q Consensus 977 deAl~~ia~~L~~-~~i~~~~g~~~~-~e~~~~~~~l~~~lGs~~~~~~~~---~~~~-~~~~~~-~~~~~~~~~~~die 1049 (1334)
.++++.+++.|.. .+..+++|+... ......+.+|++++|.+.+.+..+ ++.. +...+. ...++......-+.
T Consensus 196 ~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~ 275 (566)
T 2vbi_A 196 KAAVDATVALLEKSASPVMLLGSKLRAANALAATETLADKLQCAVTIMAAAKGFFPEDHAGFRGLYWGEVSNPGVQELVE 275 (566)
T ss_dssp HHHHHHHHHHHHTCSCEEEEECTTTTTTTCHHHHHHHHHHHCCEEEEEGGGTTSSCTTSTTEEEEECGGGSCTTHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEECcCccccchHHHHHHHHHHhCCCEEEccccCccCCCCCccccccccCccCCHHHHHHHH
Confidence 4678888999987 777777776543 233456889999999987654321 1110 000000 00111111123368
Q ss_pred ccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCC
Q psy11935 1050 EADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKV 1090 (1334)
Q Consensus 1050 ~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~ 1090 (1334)
++|+||++|+.+.......+.. . ..+.+++.||+..
T Consensus 276 ~aDlvl~iG~~~~~~~~~~~~~----~-~~~~~~i~id~d~ 311 (566)
T 2vbi_A 276 TSDALLCIAPVFNDYSTVGWSA----W-PKGPNVILAEPDR 311 (566)
T ss_dssp TCSEEEEESCCCBTTTTTTTTS----C-CCSTTEEEECSSE
T ss_pred hCCEEEEECCCccccccccccc----c-CCCCcEEEEeCCh
Confidence 8999999999875443321110 1 1367899999864
No 280
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=43.19 E-value=11 Score=33.90 Aligned_cols=23 Identities=4% Similarity=0.118 Sum_probs=20.3
Q ss_pred cEEEEECCE--EEEeCCCCcchhhh
Q psy11935 664 KFEVFIDDK--KVMVDPGTTVLQPV 686 (1334)
Q Consensus 664 ~~~~~idg~--~~~v~~g~til~~~ 686 (1334)
.|+|++||+ +|++++|+|||+..
T Consensus 2 ~v~i~~~g~~~~~~~~~g~tll~a~ 26 (93)
T 1l5p_A 2 TITAVKGGVKKQLKFEDDQTLFTVL 26 (93)
T ss_dssp EEEEEETTEEEEEECCTTEEHHHHH
T ss_pred eEEEEeCCcEEEEEECCCChHHHHH
Confidence 478999999 99999999999954
No 281
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=42.83 E-value=1.7e+02 Score=25.40 Aligned_cols=15 Identities=20% Similarity=0.333 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy11935 174 KAKCEVYEAENKKLK 188 (1334)
Q Consensus 174 ~~~l~~l~~~l~~~~ 188 (1334)
+++++.+...-+++.
T Consensus 24 qaEl~sLrrT~~EL~ 38 (78)
T 3iv1_A 24 QAELNALKRTEEDLK 38 (78)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 344444444333333
No 282
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=42.44 E-value=1e+02 Score=28.02 Aligned_cols=22 Identities=23% Similarity=0.099 Sum_probs=11.4
Q ss_pred HHHHhHHHHHHHHHHHHhhHHH
Q psy11935 454 RKEVSIVTVTLFLERLRSSHSK 475 (1334)
Q Consensus 454 ~~~~~~~~l~~~~~~~~~~~~~ 475 (1334)
..+..+..++.+.++++..+..
T Consensus 72 ~~~~~~e~Lq~E~erLr~~v~~ 93 (100)
T 1go4_E 72 RLREDHSQLQAECERLRGLLRA 93 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555443
No 283
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=42.33 E-value=1e+02 Score=23.90 Aligned_cols=6 Identities=0% Similarity=0.235 Sum_probs=2.3
Q ss_pred HHHHHH
Q psy11935 53 LREFYQ 58 (1334)
Q Consensus 53 ~~er~~ 58 (1334)
+++|+.
T Consensus 35 lKqRit 40 (46)
T 3swy_A 35 MKQRLS 40 (46)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 284
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=42.03 E-value=1.5e+02 Score=26.30 Aligned_cols=10 Identities=0% Similarity=-0.127 Sum_probs=3.8
Q ss_pred hhHHHHHHHh
Q psy11935 403 ALYTKTVRSV 412 (1334)
Q Consensus 403 ~ei~~L~~~~ 412 (1334)
++++.|...|
T Consensus 22 rEle~le~~I 31 (89)
T 2lw1_A 22 RELEQLPQLL 31 (89)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 285
>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}
Probab=41.95 E-value=29 Score=47.03 Aligned_cols=41 Identities=29% Similarity=0.593 Sum_probs=34.5
Q ss_pred CCCcEEEEECCEEEEeC---CCCcchh----------------------------------------hhhhhcCCC--CC
Q psy11935 661 NNEKFEVFIDDKKVMVD---PGTTVLQ----------------------------------------PVAACAMPV--MK 695 (1334)
Q Consensus 661 ~~~~~~~~idg~~~~v~---~g~til~----------------------------------------~~~ac~~~~--~~ 695 (1334)
.++.+.++|||+.|++. |.+|+|+ ++-||-+|+ -+
T Consensus 6 ~~~~l~F~vNG~~v~~~~~~p~~tLl~~LR~~~~ltGTK~gC~EG~CGACtV~v~~~~~~~~~~~~~avNsCl~~l~~~~ 85 (1335)
T 3zyv_A 6 ESDELIFFVNGKKVTERNADPEVNLLFYLRKVIRLTGTKYGCGGGDCGACTVMISRYDPISKRISHFSATACLVPICSLH 85 (1335)
T ss_dssp -CCCEEEEETTEEEEESSCCTTCBHHHHHHHTTCCTTSCCSCSSSSSCTTEEEEEEEETTTTEEEEEEEETTTCBGGGCT
T ss_pred CCCeEEEEECCEEEEeCCCCcCccHHHHHhccCCCcccccccCCCCCcceEEEEeeEeCCCCeEEEEEhhHHHHHHHHhc
Confidence 35568899999999854 9999999 567899887 68
Q ss_pred CCEEEc
Q psy11935 696 GWRVKT 701 (1334)
Q Consensus 696 gm~v~t 701 (1334)
|+.|.|
T Consensus 86 g~~v~T 91 (1335)
T 3zyv_A 86 GAAVTT 91 (1335)
T ss_dssp TCEEEC
T ss_pred CCEEEe
Confidence 999999
No 286
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=41.86 E-value=7.4 Score=43.00 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=17.0
Q ss_pred cccccccccccccccccccc
Q psy11935 870 LFLSELSGNVIDLCPVGALT 889 (1334)
Q Consensus 870 ~~~~~~cg~cv~~CpvGAl~ 889 (1334)
...|+.||.|..+||+...+
T Consensus 179 ~~~CI~CG~C~~aCP~~~~~ 198 (282)
T 3vr8_B 179 LYECILCACCSASCPSYWWN 198 (282)
T ss_pred hhhCcccCcCcccCCceecc
Confidence 34599999999999998764
No 287
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=41.64 E-value=54 Score=41.03 Aligned_cols=86 Identities=15% Similarity=0.061 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcc-CCEEEEeCCcC--CHHHHHHHHHHHHHhCCCccccCCCCCcchhhhhhh-hhccC-CCC--ccccc
Q psy11935 977 EDALIAVAQKLQT-SEVAGVVGSLA--DAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLR-ANYLL-NNK--IAGAE 1049 (1334)
Q Consensus 977 deAl~~ia~~L~~-~~i~~~~g~~~--~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~-~~~~~-~~~--~~die 1049 (1334)
+++++.+++.|.. .+..+++|+.. +......+.+|++++|.+.+.+..+....+....+. ...++ +.. ..-+.
T Consensus 276 ~~~i~~a~~~L~~AkrPvIl~G~g~~~~~~~~~~l~~lae~~~~PV~tt~~gkg~~~~~hpl~lG~~G~~g~~~~~~~l~ 355 (677)
T 1t9b_A 276 MQSINKAADLINLAKKPVLYVGAGILNHADGPRLLKELSDRAQIPVTTTLQGLGSFDQEDPKSLDMLGMHGCATANLAVQ 355 (677)
T ss_dssp HHHHHHHHHHHHTCSSEEEEECGGGGGSTTHHHHHHHHHHHTTCCEEECGGGTTSSCTTSTTEEEECSTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEEECcccccCchhHHHHHHHHHHhCCCeeeccccCccCCCCCccccCcCCccCcHHHHHHHh
Confidence 5788999999988 77777777654 223445688999999998765432111000000000 00111 111 12368
Q ss_pred ccCeEEEEcCCcc
Q psy11935 1050 EADLILLIGTNPR 1062 (1334)
Q Consensus 1050 ~ad~Il~~G~np~ 1062 (1334)
+||+||.+|+.+.
T Consensus 356 ~aDlvl~iG~r~~ 368 (677)
T 1t9b_A 356 NADLIIAVGARFD 368 (677)
T ss_dssp HCSEEEEESCCCC
T ss_pred cCCEEEEECCccC
Confidence 9999999999765
No 288
>3l51_A Structural maintenance of chromosomes protein 2; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus}
Probab=40.24 E-value=32 Score=34.37 Aligned_cols=54 Identities=11% Similarity=0.063 Sum_probs=41.4
Q ss_pred ccCCeEeeecccccc-chhhhHHHHhhhhch-----hhhHHHHHHHHhhCCC--CCceEecc
Q psy11935 323 DMRKYIEMQYSMFSA-DSTHMNIVERDIPNS-----ADDMRKYIEMLLEKPP--GNPVSDLE 376 (1334)
Q Consensus 323 ~~~G~iG~A~dLV~~-d~~~~~Ii~~LLG~t-----~e~ld~A~~iak~~~~--r~RIVTLd 376 (1334)
+.+|+.|...+|+++ |++|...++..||.- ++|.+.|.++-+..+. |.-++.|+
T Consensus 13 ~~~gv~G~v~dLi~v~d~~y~~Ave~alG~~l~~iVVd~~~~A~~~i~~~~~~GR~tflpL~ 74 (161)
T 3l51_A 13 NRNSVKGLVASLINVKDNSTATALEVVAGERLYNVVVDTEVTAKKLLEKGELKRRYTIIPLN 74 (161)
T ss_dssp CGGGEEEEGGGSCEESCGGGHHHHHHHHGGGGGCEEESCHHHHHHHHHHSCCSSCEEEEETT
T ss_pred CcCccEEEHHHheeeCchhHHHHHHHHhccccceEEECCHHHHHHHHHHHhhCCcEEEEECc
Confidence 568999999999999 599999999999874 8998888776655432 33344443
No 289
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=40.00 E-value=16 Score=32.42 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=23.3
Q ss_pred CCCcEEEEE-CCEEEEeCC-CCcchhhhhh
Q psy11935 661 NNEKFEVFI-DDKKVMVDP-GTTVLQPVAA 688 (1334)
Q Consensus 661 ~~~~~~~~i-dg~~~~v~~-g~til~~~~a 688 (1334)
...|++|++ ||...++|+ |+|+++++.+
T Consensus 8 ~~~~i~I~lpdG~~~~~~~~~~T~~dia~~ 37 (88)
T 1wwt_A 8 DSKPIKVTLPDGKQVDAESWKTTPYQIACG 37 (88)
T ss_dssp SCCEEEEECTTSCEEEEETTTCCHHHHHHH
T ss_pred CCCCEEEEECCCCEEEcccCCCCHHHHHHH
Confidence 357899999 999999998 9999995543
No 290
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=39.96 E-value=8.5 Score=47.62 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=17.0
Q ss_pred ccccccccccccccccccc
Q psy11935 872 LSELSGNVIDLCPVGALTS 890 (1334)
Q Consensus 872 ~~~~cg~cv~~CpvGAl~~ 890 (1334)
-|+.||-|+..||..||.-
T Consensus 68 ~c~gc~~~~~~~p~~~i~i 86 (607)
T 3bk7_A 68 SCTGCGICVHKCPFNAISI 86 (607)
T ss_dssp TCCCCCHHHHHCSSCCCEE
T ss_pred ccCccccccCCCCcceEEE
Confidence 4899999999999999855
No 291
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=39.87 E-value=24 Score=43.14 Aligned_cols=109 Identities=17% Similarity=0.085 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhcc-CCEEEEeCCcCC-HHHHHHHHHHHHHhCCCccccCCC---CCcc-hhhhhh-hhhccCCCCccccc
Q psy11935 977 EDALIAVAQKLQT-SEVAGVVGSLAD-AEAMVALKDLLNKLGSEDLYTEYA---FPLE-GAGTDL-RANYLLNNKIAGAE 1049 (1334)
Q Consensus 977 deAl~~ia~~L~~-~~i~~~~g~~~~-~e~~~~~~~l~~~lGs~~~~~~~~---~~~~-~~~~~~-~~~~~~~~~~~die 1049 (1334)
.++++.+++.|.. .+..+++|+... ......+.+|++++|.+.+.+..+ ++.. +...+. ...++......-+.
T Consensus 196 ~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~~~~~~p~~~G~~~g~~~~~~~~~~l~ 275 (568)
T 2wvg_A 196 NAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGAVATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMK 275 (568)
T ss_dssp HHHHHHHHHHHTTCCCEEEEECTTTTTTTCHHHHHHHHHHHCCEEEEEGGGTTSSCTTSTTEEEEECGGGSCTTHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEECccccccchHHHHHHHHHHhCCCEEEchhcCccCCCCCCceeccccCCcCCHHHHHHHH
Confidence 4678899999987 777777776543 233456889999999886554321 1110 000000 00111111123468
Q ss_pred ccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCC
Q psy11935 1050 EADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKV 1090 (1334)
Q Consensus 1050 ~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~ 1090 (1334)
++|+||++|+.+.......+. + . ..+.+++.||+..
T Consensus 276 ~aDlvl~iG~~~~~~~~~~~~--~--~-~~~~~~i~id~d~ 311 (568)
T 2wvg_A 276 EADAVIALAPVFNDYSTTGWT--D--I-PDPKKLVLAEPRS 311 (568)
T ss_dssp HCSEEEEESCCCBTTTTTTTT--C--C-CCTTTEEEECSSE
T ss_pred hCCEEEEECCCcccccccccc--c--C-CCCCcEEEEeCCh
Confidence 899999999976533321111 0 1 1357899999763
No 292
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=38.96 E-value=4.7e+02 Score=30.09 Aligned_cols=6 Identities=33% Similarity=-0.125 Sum_probs=3.6
Q ss_pred Cccccc
Q psy11935 256 QSLIDS 261 (1334)
Q Consensus 256 ~~gI~G 261 (1334)
.+||+-
T Consensus 163 ~SGvY~ 168 (411)
T 3ghg_C 163 QSGLYF 168 (411)
T ss_dssp CCEEEE
T ss_pred CCceEE
Confidence 567664
No 293
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=38.76 E-value=12 Score=34.37 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=19.4
Q ss_pred cEEEE-ECC--EEEEeCCCCcchhhh
Q psy11935 664 KFEVF-IDD--KKVMVDPGTTVLQPV 686 (1334)
Q Consensus 664 ~~~~~-idg--~~~~v~~g~til~~~ 686 (1334)
.|+|+ +|| ++|.+++|+|||+..
T Consensus 5 ~v~~~~~~g~~~~~~~~~g~tlL~a~ 30 (103)
T 2wlb_A 5 KVFFVTPEGREIMIEGNEGDSILDLA 30 (103)
T ss_dssp EEEEECTTCCEEEEEECTTCBHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHH
Confidence 36677 789 999999999999954
No 294
>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*
Probab=38.71 E-value=25 Score=46.39 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=39.8
Q ss_pred CCcEEEEECCChhhh-------HHhhc-CCCceEEEEcCCCChhhccccEEecCCCCCC
Q psy11935 1192 PPKVLFLLGADEGSI-------SRDDV-GKDCFIIYQGHHGDHGASIADAILPGAAYTE 1242 (1334)
Q Consensus 1192 ~ik~l~~~g~np~~~-------~~~al-~k~~fvV~~d~~~~eta~~ADvVLP~a~~~E 1242 (1334)
..+.++++|+||... ..++. .+-.-+|++|+..|.|+..||..||...-+.
T Consensus 222 ~ad~il~~G~N~~~~~p~~~~~i~~a~~~~GaklivIDPr~t~ta~~AD~~l~irPGTD 280 (1015)
T 1kqf_A 222 NANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIVVDPRFTRTASVADIYAPIRSGTD 280 (1015)
T ss_dssp GCSEEEEESCCHHHHSTTTTHHHHHHHHHSCCEEEEECSSCCHHHHTCSEEECCCTTCH
T ss_pred hCCEEEEECCChhhhCchHHHHHHHHHHHCCCeEEEEeCCCCchhHhhCeeeccCCCch
Confidence 378999999999431 23444 4555799999999999999999999976543
No 295
>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A*
Probab=38.61 E-value=27 Score=44.21 Aligned_cols=50 Identities=16% Similarity=0.158 Sum_probs=39.1
Q ss_pred CCcEEEEECCChhhh-------HHhhcCC--CceEEEEcCCCChhhccccEEecCCCCC
Q psy11935 1192 PPKVLFLLGADEGSI-------SRDDVGK--DCFIIYQGHHGDHGASIADAILPGAAYT 1241 (1334)
Q Consensus 1192 ~ik~l~~~g~np~~~-------~~~al~k--~~fvV~~d~~~~eta~~ADvVLP~a~~~ 1241 (1334)
..++++++|.||... ..++..+ ..-+|++|+..+.|+.+||..||...-+
T Consensus 166 ~ad~il~~G~n~~~~~p~~~~~~~~a~~~~~g~klividP~~t~ta~~Ad~~l~irPGt 224 (723)
T 2nap_A 166 QATCFFIIGSNTSEAHPVLFRRIARRKQVEPGVKIIVADPRRTNTSRIADMHVAFRPGT 224 (723)
T ss_dssp TCSEEEEESCCHHHHSHHHHHHHHHHHHHCTTCEEEEECSBCCGGGGGCSEEECCCTTT
T ss_pred HCCEEEEEcCChhHhCcHHHHHHHHHHhhCCCCEEEEEcCcCCchhhhhCeeeecCCCc
Confidence 578999999999431 2334343 4568999999999999999999997654
No 296
>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=38.45 E-value=24 Score=46.26 Aligned_cols=51 Identities=10% Similarity=0.070 Sum_probs=39.3
Q ss_pred CCcEEEEECCChhhh-------HHhhcCCCceEEEEcCCCChhhccccEEecCCCCCC
Q psy11935 1192 PPKVLFLLGADEGSI-------SRDDVGKDCFIIYQGHHGDHGASIADAILPGAAYTE 1242 (1334)
Q Consensus 1192 ~ik~l~~~g~np~~~-------~~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~E 1242 (1334)
..+.++++|+||... ..++-.+-.-+|++|+..++|+..||..||...-+.
T Consensus 246 nad~Il~~G~N~~~~~p~~~~~~~~ar~~GakvivVDPr~t~ta~~AD~wl~irPGTD 303 (976)
T 2ivf_A 246 DAELIFMTCSNWSYTYPSSYHFLSEARYKGAEVVVIAPDFNPTTPAADLHVPVRVGSD 303 (976)
T ss_dssp GCSEEEEESCCHHHHCTTTHHHHHHHHHHTCEEEEECSSCCTTGGGCSEEECCCTTCH
T ss_pred hCcEEEEeCCChhHcccHHHHHHHHHHHcCCEEEEECCCCCcchhhcCeEeccCCCcH
Confidence 368999999999431 233333445699999999999999999999977644
No 297
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=38.40 E-value=6.2e+02 Score=30.74 Aligned_cols=17 Identities=6% Similarity=0.085 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11935 195 DIKLKETNHLLKEESKK 211 (1334)
Q Consensus 195 ~~~l~~l~~~~~~~~~~ 211 (1334)
+.+.+.+++++.+++..
T Consensus 566 ~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 566 QKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44555555555555443
No 298
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=38.32 E-value=1e+02 Score=27.93 Aligned_cols=30 Identities=3% Similarity=-0.071 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhHhhhhhHHHHHHHHH
Q psy11935 126 IVENAAKQLKQISENEFKQKEKTIVENAAK 155 (1334)
Q Consensus 126 i~~~~~~~ie~~~~~~~l~n~~~~~~~~~~ 155 (1334)
+.....+|-++++-+..+..++..+.+-++
T Consensus 60 ~~~ql~EYq~LlnvKl~Le~EIatYrkLLE 89 (95)
T 3mov_A 60 MQQQLNDYEQLLDVKLALDMEISAYRKLLE 89 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333444555666665555566555554443
No 299
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=37.94 E-value=1.3e+02 Score=35.76 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=14.1
Q ss_pred CCcEEEcCCHHHHHHHHHHHHHHhhC
Q psy11935 800 KGWRVKTNSEMTRRAREGVMEFLLVN 825 (1334)
Q Consensus 800 ~gm~i~t~s~~~r~~r~~~~~~ll~~ 825 (1334)
.|+-+.. +.--.+.+.+..+++..
T Consensus 209 ~g~~~l~--p~GarL~~aL~~~~~d~ 232 (501)
T 1wle_A 209 HRSYYLR--GAGALLQHGLVNFTLNK 232 (501)
T ss_dssp TTCCEEE--THHHHHHHHHHHHHHHH
T ss_pred CceEEEc--ChHHHHHHHHHHHHHHH
Confidence 3444666 55555666666666544
No 300
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=37.93 E-value=3.6e+02 Score=28.68 Aligned_cols=197 Identities=10% Similarity=0.040 Sum_probs=0.0
Q ss_pred hHHHHHHHhhHHhHHHHH--HHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHh-HHHHHHHHHHHHhhHHHHHh
Q psy11935 404 LYTKTVRSVTLKISKEKI--ESLERNLQ-TETQRSRKLEEELQDTRQTCE-EVVRKEVS-IVTVTLFLERLRSSHSKRSK 478 (1334)
Q Consensus 404 ei~~L~~~~~~~~~~~~~--~~l~~~~~-~l~~~~~~l~~~l~~~~~~~~-e~~~~~~~-~~~l~~~~~~~~~~~~~~~~ 478 (1334)
|+..++..- ...-..+ ..+.+++. .+..-+.++......+++.+. ........ -.....-.+++...++.+..
T Consensus 18 Y~~q~~~sa--~~~~~~~~~s~l~~ql~~~~~d~~~~l~~~~~~l~~~l~p~~ee~~~~l~~~~~~lr~~l~kd~ee~r~ 95 (243)
T 2a01_A 18 YVDVLKDSG--RDYVSQFEGSALGKQLNLKLLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKA 95 (243)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHCSSCCSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSCSST
T ss_pred HHHHHHHhH--HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhh--------------HHHHHHHHHHHHHHHHHHHHH-HHHH
Q psy11935 479 NADSLVRLQKAQ--DEIQTLLAKSASIKTELREFYQTQLN--------------NNVKEKLKEFQTQLDSAELTL-HREF 541 (1334)
Q Consensus 479 e~~~l~~~~~~~--~~l~~l~~~~~~l~~~i~~~~~~~~~--------------~~l~~~l~~~~~~~a~le~~~-~~~~ 541 (1334)
.+.-+.+++... +.++.+..++.-+-.++..--..-.+ ..+...+.+++..+.-.-+++ ..+.
T Consensus 96 ~l~Py~~el~~~~~~~~eelr~~L~P~~eel~~~~~~~~eel~~~L~p~~eelr~kl~~~veelk~~l~P~~ee~r~kl~ 175 (243)
T 2a01_A 96 KVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDELRQRLA 175 (243)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCCSCCSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHh-hchhhhhhhhhhHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy11935 542 QQKEKTIVENAAKQLKQIS-EKPGATKLMLDFKAKCEVYEAENK-KLKAELTQRDIKLKETNHLLKE 606 (1334)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~l-~~~~~ei~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~ 606 (1334)
..+.+++.. +.-.-+++ +.+......+ ...+.-...++. .+.--+++++.++..+-+.+.+
T Consensus 176 ~~~~el~~~--l~p~~~e~~~kl~~~~e~l--r~~l~p~~e~lk~~l~p~~e~~~~~l~~~~e~~~~ 238 (243)
T 2a01_A 176 ARLEALKEN--GGARLAEYHAKATEHLSTL--SEKAKPALEDLRQGLLPVLESFKVSFLSALEEYTK 238 (243)
T ss_dssp HHHHHHHHH--HHHTTTSSSCCHHHHHHHH--HHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--cchhHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
No 301
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=36.74 E-value=18 Score=34.71 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=19.7
Q ss_pred CCcEEEE---ECC--EEEEeCCCCcchhhh
Q psy11935 662 NEKFEVF---IDD--KKVMVDPGTTVLQPV 686 (1334)
Q Consensus 662 ~~~~~~~---idg--~~~~v~~g~til~~~ 686 (1334)
.+|++|+ .|| +.|++++|+|||+..
T Consensus 19 ~~M~~Vt~~~~~G~~~~v~~~~G~tLL~aa 48 (126)
T 3hui_A 19 SHMAKINFVDHTGETRTVEVEEGATVMEAA 48 (126)
T ss_dssp CSEEEEEEECTTSCEEEEEEETTSBHHHHH
T ss_pred CCceEEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 4566655 469 999999999999954
No 302
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=36.51 E-value=8.4 Score=45.15 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=25.2
Q ss_pred ccccccccccccccccCCcccCCCCcceeeeeecccCC---CCCceEEE
Q psy11935 876 SGNVIDLCPVGALTSKPYSFTARPWETRKTESVDVLDA---VGSNIIVS 921 (1334)
Q Consensus 876 cg~cv~~CpvGAl~~k~~~~~~r~we~~~~~s~c~~C~---~gC~i~v~ 921 (1334)
|+.||++|||+||.-.. -.++....-|..|+ ..|+.-+.
T Consensus 277 ~~~vv~~CPt~ai~~~~-------~~l~Id~~~C~~Cg~Ci~~CP~al~ 318 (437)
T 3or1_A 277 EAEVVGLCPTGCMTYES-------GTLSIDNKNCTRCMHCINTMPRALK 318 (437)
T ss_dssp HHHTTTTCTTCCEEEET-------TEEEECGGGCCCCSHHHHHCTTTEE
T ss_pred chhhhccCcHHheeecC-------CEEEEccccCCchhhhHhhCcHhhc
Confidence 57899999999995431 13445555666665 46665444
No 303
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=36.19 E-value=3.8e+02 Score=30.87 Aligned_cols=17 Identities=18% Similarity=0.020 Sum_probs=9.4
Q ss_pred eeeecccCCCCCceEEE
Q psy11935 905 TESVDVLDAVGSNIIVS 921 (1334)
Q Consensus 905 ~~s~c~~C~~gC~i~v~ 921 (1334)
+...|-+...|-|..|-
T Consensus 178 f~VyCDm~t~GGGWtVi 194 (411)
T 3ghg_C 178 FLVYCEIDGSGNGWTVF 194 (411)
T ss_dssp EEEEEEECTTCCEEEEE
T ss_pred EEEEeeeecCCCceEEE
Confidence 44556666566665543
No 304
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=35.86 E-value=1.4e+02 Score=35.46 Aligned_cols=23 Identities=4% Similarity=-0.119 Sum_probs=14.4
Q ss_pred cEEEcCCHHHHHHHHHHHHHHhhCC
Q psy11935 802 WRVKTNSEMTRRAREGVMEFLLVNH 826 (1334)
Q Consensus 802 m~i~t~s~~~r~~r~~~~~~ll~~h 826 (1334)
+.+.. +.--.+++.+..+++..|
T Consensus 177 ~~~l~--p~GarL~~aL~~~~~d~~ 199 (485)
T 3qne_A 177 GYFLR--NYGVFLNQALINYGLSFL 199 (485)
T ss_dssp CCEEC--THHHHHHHHHHHHHHHHH
T ss_pred eEEEe--cHHHHHHHHHHHHHHHHH
Confidence 33666 666667777777766543
No 305
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=35.86 E-value=51 Score=38.34 Aligned_cols=15 Identities=13% Similarity=0.248 Sum_probs=9.9
Q ss_pred cCCCcEEEEECCChh
Q psy11935 1190 EKPPKVLFLLGADEG 1204 (1334)
Q Consensus 1190 ~g~ik~l~~~g~np~ 1204 (1334)
.|.-+.+++....|.
T Consensus 363 gGnskt~mi~~vsP~ 377 (403)
T 4etp_A 363 TGDSKTLMFVNISPS 377 (403)
T ss_dssp STTCEEEEEEEECCS
T ss_pred CCCceEEEEEEeCCc
Confidence 456677777777773
No 306
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=35.85 E-value=53 Score=40.31 Aligned_cols=106 Identities=17% Similarity=0.028 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhcc-CCEEEEeCCcCCHHHHHHHHHHHHHhCCCccccCCCCCcchhhhhh-hhhccC-CCC--ccccccc
Q psy11935 977 EDALIAVAQKLQT-SEVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDL-RANYLL-NNK--IAGAEEA 1051 (1334)
Q Consensus 977 deAl~~ia~~L~~-~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~-~~~~~~-~~~--~~die~a 1051 (1334)
.++++.+++.|.. .+..+++|+... .....+.+|++++|.+.+.+..+....+....+ ....++ +.. ..-+.++
T Consensus 192 ~~~i~~~~~~l~~a~rpvil~G~g~~-~a~~~l~~lae~~~~Pv~~t~~g~g~~~~~~p~~~G~~g~~g~~~~~~~l~~a 270 (590)
T 1v5e_A 192 AQDIDAAVELLNNSKRPVIYAGIGTM-GHGPAVQELARKIKAPVITTGKNFETFEWDFEALTGSTYRVGWKPANETILEA 270 (590)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECGGGT-TCHHHHHHHHHHHTCCEEECTTCGGGSCTTCTTEEEESSSSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCeEEEEcCchh-HHHHHHHHHHHHHCCCEEEccccCcCCCCCChhhCccCcccCCHHHHHHHHhC
Confidence 3567778888876 677677776553 445578899999998866543211000000000 001111 111 1236899
Q ss_pred CeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCC
Q psy11935 1052 DLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKV 1090 (1334)
Q Consensus 1052 d~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~ 1090 (1334)
|+||++|+.+......... + .+.+++.||+..
T Consensus 271 Dlvl~iG~~~~~~~~~~~~-----~--~~~~~i~id~d~ 302 (590)
T 1v5e_A 271 DTVLFAGSNFPFSEVEGTF-----R--NVDNFIQIDIDP 302 (590)
T ss_dssp SEEEEESCCCTTTTTTTTT-----T--TCSEEEEEESCG
T ss_pred CEEEEECCCCcchhccccC-----C--CCCeEEEEeCCH
Confidence 9999999977433200000 1 257999999753
No 307
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=35.63 E-value=91 Score=32.20 Aligned_cols=109 Identities=17% Similarity=0.103 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHhcc-CCEEEEeCCcCCHHHHHHHHHHHHH-----hCCCccccCCCCCcchhhhhhhhhccCCCC----
Q psy11935 975 EWEDALIAVAQKLQT-SEVAGVVGSLADAEAMVALKDLLNK-----LGSEDLYTEYAFPLEGAGTDLRANYLLNNK---- 1044 (1334)
Q Consensus 975 SWdeAl~~ia~~L~~-~~i~~~~g~~~~~e~~~~~~~l~~~-----lGs~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 1044 (1334)
..++|.+.+++.|+. ++|.+++.+....-..++..+|... +|-+.+...+. .....++...+++...
T Consensus 31 ~i~~a~~~i~~al~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~r~g~~~~~~~~d---~~~~~a~~~d~~~~~~~~~~ 107 (201)
T 3trj_A 31 AIAQAAKAMVSCLENGGKVLVCGNGSSGVIAQHFTSKLLNHFEMERPPLPAIALTGD---VATITAVGNHYGFSQIFAKQ 107 (201)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHC-------CCCEEETTSC---HHHHHHHHHHTCGGGTTHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHhcCccCCCCCCCceEEccCC---hHHHHHhccCCCHHHHHHHH
Confidence 456777777777777 7887776665544455555666643 33332221100 0000111111111111
Q ss_pred cc-cccccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccC
Q psy11935 1045 IA-GAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK 1089 (1334)
Q Consensus 1045 ~~-die~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~ 1089 (1334)
+. -+..-|++|++.... ..|-+..-++.+ +++|++++.|...
T Consensus 108 l~~~~~~~Dvvi~iS~SG--~t~~~~~~~~~a-k~~g~~vi~iT~~ 150 (201)
T 3trj_A 108 VAALGNEDDILLVITTSG--DSENILSAVEEA-HDLEMKVIALTGG 150 (201)
T ss_dssp HHHHCCTTCEEEEECSSS--CCHHHHHHHHHH-HHTTCEEEEEEET
T ss_pred HHhhCCCCCEEEEEeCCC--CCHHHHHHHHHH-HHCCCcEEEEECC
Confidence 11 145678888886532 233333344444 4689999999654
No 308
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=35.05 E-value=1.4e+02 Score=23.62 Aligned_cols=37 Identities=8% Similarity=0.094 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy11935 13 KSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASI 49 (1334)
Q Consensus 13 ~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l 49 (1334)
.+..++..+-.+...|.+-+...+++|..+.++++++
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444555555555555554443
No 309
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=34.54 E-value=22 Score=43.46 Aligned_cols=106 Identities=12% Similarity=0.139 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhcc-CCEEEEeCCcCC-HHHHHHHHHHHHHhCCCccccCCCCCcchhhhhhhhhccCCCCcccccccCeE
Q psy11935 977 EDALIAVAQKLQT-SEVAGVVGSLAD-AEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEEADLI 1054 (1334)
Q Consensus 977 deAl~~ia~~L~~-~~i~~~~g~~~~-~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~die~ad~I 1054 (1334)
.++++.+++.|.. .+..+++|+... ......+.+|++.+|.+.+.+..+-...+ ..+....+. ....-+.+||+|
T Consensus 198 ~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~--~~hp~~~G~-~~~~~l~~aDlv 274 (564)
T 2q28_A 198 PKSVTSAISLLAKAERPLIILGKGAAYSQADEQLREFIESAQIPFLPMSMAKGILE--DTHPLSAAA-ARSFALANADVV 274 (564)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHHHTCCEEECGGGTTSSC--TTCTTBCGG-GHHHHHHHCSEE
T ss_pred HHHHHHHHHHHHcCCCcEEEECcccccccHHHHHHHHHHHhCCCEEeccCccccCC--CCChhhcCh-HHHhHhhcCCEE
Confidence 4678888888887 777777776542 23345688999999998765432110000 001000111 111246789999
Q ss_pred EEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCC
Q psy11935 1055 LLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKV 1090 (1334)
Q Consensus 1055 l~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~ 1090 (1334)
|.+|+.+...... . + ..+ ..+.++|.||+..
T Consensus 275 l~iG~~~~~~~~~-~-~--~~~-~~~~~~i~id~d~ 305 (564)
T 2q28_A 275 MLVGARLNWLLAH-G-K--KGW-AADTQFIQLDIEP 305 (564)
T ss_dssp EEESCCCSGGGGG-G-T--TTS-CTTCEEEEEESCG
T ss_pred EEECCcccccccc-c-c--ccc-CCCCeEEEEeCCH
Confidence 9999987432111 1 1 111 2467999999753
No 310
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=34.45 E-value=61 Score=33.12 Aligned_cols=107 Identities=13% Similarity=0.111 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhcc-CCEEEEeCCcCCHHHHHHHHHHHH-----HhCCCccccCCCCCcchhhhhhhhhccCCCC-----c
Q psy11935 977 EDALIAVAQKLQT-SEVAGVVGSLADAEAMVALKDLLN-----KLGSEDLYTEYAFPLEGAGTDLRANYLLNNK-----I 1045 (1334)
Q Consensus 977 deAl~~ia~~L~~-~~i~~~~g~~~~~e~~~~~~~l~~-----~lGs~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 1045 (1334)
+++++.+++.|.. ++|.+++.+....-..++..+|.. ++|-+.+...+. .+..+++...+++... .
T Consensus 28 ~~~~~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~---~~~~~a~~~d~~~~~~~~~~~~ 104 (196)
T 2yva_A 28 SRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTD---NVVLTAIANDRLHDEVYAKQVR 104 (196)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHTCSSSCCCCCCEEESSCC---HHHHHHHTTSTTGGGHHHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEEeCchhhHHHHHHHHHHhccccccCCCCceEeecCc---hHHHHHHhcCCCHHHHHHHHHH
Confidence 4788899999988 788776665543334444444442 233221111100 0000000000100000 1
Q ss_pred ccccccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccC
Q psy11935 1046 AGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK 1089 (1334)
Q Consensus 1046 ~die~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~ 1089 (1334)
..+..-|++|++.... . .+.+..-++.+ +++|++++.|-..
T Consensus 105 ~~~~~~DvvI~iS~SG-~-t~~~i~~~~~a-k~~g~~vI~IT~~ 145 (196)
T 2yva_A 105 ALGHAGDVLLAISTRG-N-SRDIVKAVEAA-VTRDMTIVALTGY 145 (196)
T ss_dssp HHCCTTCEEEEECSSS-C-CHHHHHHHHHH-HHTTCEEEEEECT
T ss_pred hcCCCCCEEEEEeCCC-C-CHHHHHHHHHH-HHCCCEEEEEeCC
Confidence 3355678887776543 2 33333334444 4789999999754
No 311
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=34.38 E-value=9.2 Score=41.95 Aligned_cols=17 Identities=18% Similarity=0.550 Sum_probs=15.2
Q ss_pred ccccccccccccccccc
Q psy11935 874 ELSGNVIDLCPVGALTS 890 (1334)
Q Consensus 874 ~~cg~cv~~CpvGAl~~ 890 (1334)
..||.|++.||.|||.-
T Consensus 174 ~~C~~C~~~CP~g~I~i 190 (265)
T 2pa8_D 174 ANCEKAVNVCPEGVFEL 190 (265)
T ss_dssp SCCTTHHHHCTTCCEEE
T ss_pred hhHHHHHHhCcccCeEe
Confidence 68999999999999953
No 312
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=34.28 E-value=51 Score=40.74 Aligned_cols=109 Identities=15% Similarity=0.048 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhcc-CCEEEEeCCcCC-HHHHHHHHHHHHHhCCCccccCCCCCcchhhhhh-hhhccC-CCC---ccccc
Q psy11935 977 EDALIAVAQKLQT-SEVAGVVGSLAD-AEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDL-RANYLL-NNK---IAGAE 1049 (1334)
Q Consensus 977 deAl~~ia~~L~~-~~i~~~~g~~~~-~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~-~~~~~~-~~~---~~die 1049 (1334)
+++++.+++.|.. .+..+++|+... ......+.+|++++|.+.+.+..+....+....+ ...++. ... ..-+.
T Consensus 213 ~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~PV~~t~~~~g~~~~~hp~~~G~~g~~~~~~~~~~~l~ 292 (616)
T 2pan_A 213 RMQIEKAVEMLIQAERPVIVAGGGVINADAAALLQQFAELTSVPVIPTLMGWGCIPDDHELMAGMVGLQTAHRYGNATLL 292 (616)
T ss_dssp HHHHHHHHHHHHTCSSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEECTTTTTSSCTTSTTBCCCCSSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCeEEEECCCcCcccHHHHHHHHHHHhCCCEEEccccCccCCCCCccccCCccccCCHHHHHHHHH
Confidence 6778888888887 677677775432 2233567889999999876543221100000000 011121 111 12368
Q ss_pred ccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCC
Q psy11935 1050 EADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKV 1090 (1334)
Q Consensus 1050 ~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~ 1090 (1334)
++|+||++|+.+....+ ..+... ..+.+++.||+..
T Consensus 293 ~aDlvl~iG~~~~~~~~---~~~~~~--~~~~~~i~id~d~ 328 (616)
T 2pan_A 293 ASDMVFGIGNRFANRHT---GSVEKY--TEGRKIVHIDIEP 328 (616)
T ss_dssp HCSEEEEESCCCCHHHH---SSHHHH--HTTCEEEEEESCG
T ss_pred hCCEEEEECCCCccccc---Cccccc--CCCCeEEEEeCCH
Confidence 99999999997542111 112211 1357899998753
No 313
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=34.05 E-value=2.2e+02 Score=24.27 Aligned_cols=28 Identities=7% Similarity=0.140 Sum_probs=13.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy11935 53 LREFYQTQLNNNQKAQDEIQTLLAKSAS 80 (1334)
Q Consensus 53 ~~er~~~~~~~~~~l~~~i~~l~~~~~~ 80 (1334)
..+.+...+.++.+++..+..|+.+++.
T Consensus 47 ~~~~l~~~k~Ei~elrr~iq~L~~el~s 74 (77)
T 3trt_A 47 NNDALRQAKQESTEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444445555555555555554443
No 314
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=33.71 E-value=1.4e+02 Score=35.15 Aligned_cols=24 Identities=8% Similarity=-0.020 Sum_probs=13.7
Q ss_pred CCcEEEcCCHHHHHHHHHHHHHHhhC
Q psy11935 800 KGWRVKTNSEMTRRAREGVMEFLLVN 825 (1334)
Q Consensus 800 ~gm~i~t~s~~~r~~r~~~~~~ll~~ 825 (1334)
.|+.+.. +.--..++.+..+++..
T Consensus 183 ~G~~~~~--p~ga~l~~aL~~~~~~~ 206 (455)
T 2dq0_A 183 SRFYYLL--NEIVILDLALIRFALDR 206 (455)
T ss_dssp TTCCEEE--HHHHHHHHHHHHHHHHH
T ss_pred CCeEEEC--CHHHHHHHHHHHHHHHH
Confidence 3444666 55555666666665543
No 315
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=33.66 E-value=4.7e+02 Score=30.44 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 196 IKLKETNHLLKEESKKRELMAKKVESV 222 (1334)
Q Consensus 196 ~~l~~l~~~~~~~~~~~~~~~~~~~~~ 222 (1334)
..|+.|+..+..+.+++++++..+..+
T Consensus 163 ~~i~~l~~~~~~~~~~i~~l~~~~~~~ 189 (461)
T 3ghg_B 163 TNLRVLRSILENLRSKIQKLESDVSAQ 189 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444444444443433333
No 316
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A*
Probab=33.50 E-value=37 Score=43.20 Aligned_cols=50 Identities=16% Similarity=0.098 Sum_probs=38.8
Q ss_pred CCcEEEEECCChhhh--------HHhhcCCCceEEEEcCCCChhhccccEEecCCCCC
Q psy11935 1192 PPKVLFLLGADEGSI--------SRDDVGKDCFIIYQGHHGDHGASIADAILPGAAYT 1241 (1334)
Q Consensus 1192 ~ik~l~~~g~np~~~--------~~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~ 1241 (1334)
..++++++|.||... ..++..+-.-+|++|+..+.|+..||..||...-+
T Consensus 199 ~ad~il~~G~n~~~~~p~~~~~~~~~a~~~G~klividPr~t~ta~~Ad~~l~irPGt 256 (765)
T 2vpz_A 199 NARYIVLIGHHIGEDTHNTQLQDFALALKNGAKVVVVDPRFSTAAAKAHRWLPIKPGT 256 (765)
T ss_dssp GCSEEEEESCCBTTBCCHHHHHHHHHHHHTTCEEEEECSBCCTTGGGCSEEECCCTTC
T ss_pred cCCEEEEEeCChhhcCChHHHHHHHHHHHCCCEEEEECCCCCcchhhCCeEeCCCCCc
Confidence 478999999998421 13344455579999999999999999999987654
No 317
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=33.46 E-value=3.8e+02 Score=26.84 Aligned_cols=46 Identities=13% Similarity=0.094 Sum_probs=20.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 165 GATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESK 210 (1334)
Q Consensus 165 ~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~ 210 (1334)
.+....+.++..+..+......+..++........+++.++..++-
T Consensus 93 ~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKP 138 (170)
T 3l4q_C 93 RILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKP 138 (170)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 3444444444455544444444444444444444444444444433
No 318
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=33.32 E-value=1.9e+02 Score=24.69 Aligned_cols=38 Identities=13% Similarity=0.085 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHH
Q psy11935 24 FYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQL 61 (1334)
Q Consensus 24 ~l~~l~~~~~~lq~~i~~l~~~ie~l~~~~~er~~~~~ 61 (1334)
..+.++..++.||..+.++..+.+..+.++++|+..++
T Consensus 8 Kv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE 45 (74)
T 3swf_A 8 KVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVE 45 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444433333444444333
No 319
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=33.07 E-value=63 Score=25.85 Aligned_cols=32 Identities=22% Similarity=0.037 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11935 17 IKTELREFYQTQLNNNQKAQDEIQTLLAKSAS 48 (1334)
Q Consensus 17 ~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~ 48 (1334)
..+.++.++.+|+.+++.|+.++.++.+++++
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555555555555555555555555443
No 320
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=32.80 E-value=1.5e+02 Score=21.83 Aligned_cols=42 Identities=14% Similarity=0.090 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 5 DEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKS 46 (1334)
Q Consensus 5 ~~~~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~i 46 (1334)
.++++++..++.+.+.++...-...+-+.-+..++..+..+|
T Consensus 6 aqlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 6 AQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555555444443444444444444444333
No 321
>3nwc_A SMC protein; structural maintenance of chromosomes (SMC), SMC hinge domai dimerization, DNA binding, cell cycle; 1.70A {Pyrococcus furiosus}
Probab=32.68 E-value=21 Score=36.84 Aligned_cols=54 Identities=11% Similarity=0.001 Sum_probs=41.3
Q ss_pred ccCCeEeeeccccccchh-hhHHHHhhhhch-----hhhHHHHHH---HHhhC-CCCCceEecc
Q psy11935 323 DMRKYIEMQYSMFSADST-HMNIVERDIPNS-----ADDMRKYIE---MLLEK-PPGNPVSDLE 376 (1334)
Q Consensus 323 ~~~G~iG~A~dLV~~d~~-~~~Ii~~LLG~t-----~e~ld~A~~---iak~~-~~r~RIVTLd 376 (1334)
..+|++|...+|++++++ |...++..||.. |+|.+.|.. ..++. ..|..++.|+
T Consensus 32 ~~~gv~G~l~dLi~V~~~kye~Ave~aLG~~l~~iVVd~~~~A~~~i~~Lk~~~~GRatflpl~ 95 (189)
T 3nwc_A 32 GIGGIYGTLAELIKVKDEAYALAIEVALGNRADNVVVEDELVAEKAIKYLKEHKLGRLTFLPLN 95 (189)
T ss_dssp CCCSEEEEHHHHCEESCGGGHHHHHHHHGGGGGCEEESSHHHHHHHHHHHHHTTCCCCCEEETT
T ss_pred CCCCceEEHHHheeeChhhHHHHHHHHhccccccEEECCHHHHHHHHHHHHhcCCCceEEEECC
Confidence 468999999999999999 999999999874 888776644 43332 2356666665
No 322
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=32.23 E-value=2.6e+02 Score=24.48 Aligned_cols=43 Identities=5% Similarity=0.067 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 580 EAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVM 622 (1334)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~ 622 (1334)
+..+..++.++.++..+....-..+..+-.-+..++.+|...|
T Consensus 32 q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYR 74 (84)
T 1gk4_A 32 QDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYR 74 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3344444444444444444444445555555555566666555
No 323
>3ml1_A NAPA, periplasmic nitrate reductase; heterodimer, oxidoreductase; HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_A* 1ogy_A* 2nya_A*
Probab=32.10 E-value=39 Score=43.19 Aligned_cols=51 Identities=12% Similarity=0.109 Sum_probs=38.3
Q ss_pred CCcEEEEECCChhhh-------HHhhc--CCCceEEEEcCCCChhhccccEEecCCCCCC
Q psy11935 1192 PPKVLFLLGADEGSI-------SRDDV--GKDCFIIYQGHHGDHGASIADAILPGAAYTE 1242 (1334)
Q Consensus 1192 ~ik~l~~~g~np~~~-------~~~al--~k~~fvV~~d~~~~eta~~ADvVLP~a~~~E 1242 (1334)
..++++++|+||... ..++- .+-.-+|++|+..|+|+.+||+.||...-+.
T Consensus 178 ~ad~il~~G~N~~~~~p~~~~~i~~a~~~~~G~klivIDPr~t~ta~~AD~~l~irPGtD 237 (802)
T 3ml1_A 178 AADAFVLWGSNMAEMHPILWTRVTDRRLSHPKTRVVVLSTFTHRCFDLADIGIIFKPQTD 237 (802)
T ss_dssp TCSEEEEESCCHHHHSHHHHHHHHHHHHHSTTCEEEEEESSBCGGGGTCSEEEECCTTTH
T ss_pred hCCEEEEECCChHHhChHHHHHHHHHHHhcCCCEEEEEeCCCCchhHHhccEeccCCCHH
Confidence 578999999999431 12221 2345689999999999999999999876544
No 324
>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A
Probab=31.99 E-value=9.9 Score=36.39 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=0.0
Q ss_pred CCcEEEEE---CCE--EEEeCCCCcchhhh
Q psy11935 662 NEKFEVFI---DDK--KVMVDPGTTVLQPV 686 (1334)
Q Consensus 662 ~~~~~~~i---dg~--~~~v~~g~til~~~ 686 (1334)
.+||+|++ ||. +|++++|+|||+..
T Consensus 3 ~~~v~Vtf~~~~G~~~~v~~~~G~tLl~aa 32 (123)
T 3n9z_C 3 EDKITVHFINRDGETLTTKGKVGDSLLDVV 32 (123)
T ss_dssp ------------------------------
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 46788776 785 89999999999943
No 325
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}
Probab=31.90 E-value=34 Score=43.28 Aligned_cols=51 Identities=20% Similarity=0.282 Sum_probs=39.0
Q ss_pred CCcEEEEECCChhhh--------HHhhcCCCceEEEEcCCCChhhccccEEecCCCCCC
Q psy11935 1192 PPKVLFLLGADEGSI--------SRDDVGKDCFIIYQGHHGDHGASIADAILPGAAYTE 1242 (1334)
Q Consensus 1192 ~ik~l~~~g~np~~~--------~~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~E 1242 (1334)
..++++++|+||... ..++..+-.-+|++|+..|.|+..||..||...-+.
T Consensus 160 ~ad~il~~G~n~~~~~p~~~~~~l~~a~~~G~klividPr~t~ta~~Ad~~l~irPGtD 218 (727)
T 2e7z_A 160 DSNCLLFIGKNLSNHNWVSQFNDLKAALKRGCKLIVLDPRRTKVAEMADIWLPLRYGTD 218 (727)
T ss_dssp TCSEEEEESCCCBTTBSHHHHHHHHHHHHHTCEEEEECSSCCHHHHHCSEEECCCTTCH
T ss_pred cCCEEEEECCChhhcCCHHHHHHHHHHHHCCCeEEEECCCCCcchhhcceeecCCCCcH
Confidence 578999999998421 123333445689999999999999999999876653
No 326
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=31.88 E-value=1.3e+02 Score=27.50 Aligned_cols=48 Identities=8% Similarity=0.160 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhh-HHHHHHHHHhhhHHHHHHHHHHHHH
Q psy11935 30 NNNQKAQDEIQTLLAKSASIKTE-LREFYQTQLNNNQKAQDEIQTLLAK 77 (1334)
Q Consensus 30 ~~~~~lq~~i~~l~~~ie~l~~~-~~er~~~~~~~~~~l~~~i~~l~~~ 77 (1334)
.+...+..++......+..+.+. .+..+......++++.+-|...+-+
T Consensus 12 ~df~~l~~~i~~kl~~i~~~~geerk~~i~~ie~~l~EA~ell~qMelE 60 (102)
T 1vcs_A 12 QDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLE 60 (102)
T ss_dssp HHHHHHHHHHHHHHHHGGGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444334333333 4444444444444444444443333
No 327
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=31.49 E-value=1.4e+02 Score=35.40 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11935 491 DEIQTLLAKSASIKTELREF 510 (1334)
Q Consensus 491 ~~l~~l~~~~~~l~~~i~~~ 510 (1334)
+++..+++++..++.++..+
T Consensus 85 ~~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 85 NEKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555555554444433
No 328
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=31.47 E-value=54 Score=33.01 Aligned_cols=41 Identities=27% Similarity=0.349 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCCCcEEEEcCCcccHHHHHHHHHHHHHhhcCC
Q psy11935 1113 SHPFSKKLSAAKKPLIVVGADISDGAAVLALVQQLAAKVTCE 1154 (1334)
Q Consensus 1113 ~~~~A~~l~~a~~~~ii~G~~~~~g~~~~~al~~l~~~~g~~ 1154 (1334)
+.++++.+.+|++|+|++|.++... .....+..|+..+|.|
T Consensus 24 v~~aa~~L~~AkrPvil~G~g~~~~-~a~~~l~~lae~~~iP 64 (170)
T 3cf4_G 24 PEMAAKIISKAKRPLLMVGTLALDP-ELLDRVVKISKAANIP 64 (170)
T ss_dssp HHHHHHHHHHCSSEEEEECSTTCCH-HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCCCEEEECCCccch-hHHHHHHHHHHHhCCC
Confidence 5677889999999999999988321 2344567777777765
No 329
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=31.28 E-value=2.6e+02 Score=31.44 Aligned_cols=17 Identities=29% Similarity=0.122 Sum_probs=7.0
Q ss_pred ccccccccccccccccc
Q psy11935 259 IDSTTDTNCPVTQQYVP 275 (1334)
Q Consensus 259 I~G~Vaeli~Vp~~Y~~ 275 (1334)
+-|+|.++---+-.|..
T Consensus 161 ~~G~V~~~~~~~G~~v~ 177 (369)
T 4dk0_A 161 IDGTVISTPVSEGQTVN 177 (369)
T ss_dssp CCSCCCBCCCCTTCBCC
T ss_pred CCeEEEEeeCCCCCCcc
Confidence 44455543333333333
No 330
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=31.16 E-value=39 Score=41.56 Aligned_cols=107 Identities=13% Similarity=0.015 Sum_probs=61.7
Q ss_pred HHHHHHHHHhcc-CCEEEEeCCcCC-HHHHHHHHHHHHHhCCCccccCCCCCcchhhhh-hhhhccC-CCC--ccccccc
Q psy11935 978 DALIAVAQKLQT-SEVAGVVGSLAD-AEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTD-LRANYLL-NNK--IAGAEEA 1051 (1334)
Q Consensus 978 eAl~~ia~~L~~-~~i~~~~g~~~~-~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~-~~~~~~~-~~~--~~die~a 1051 (1334)
++++.+++.|.. .+..+++|+... ......+.+|++++|.+.+.+..+-...+.... +....++ +.. ..-+.++
T Consensus 193 ~~v~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~~p~~~G~~g~~~~~~~~~~l~~a 272 (589)
T 2pgn_A 193 EDVREAAAQLVAAKNPVILAGGGVARSGGSEALLKLAEMVGVPVVTTSTGAGVFPETHALAMGSAGFCGWKSANDMMAAA 272 (589)
T ss_dssp HHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHHHTCCEEECTTTTTSSCTTSTTEEEECSTTSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCeEEEECCCcccccHHHHHHHHHHHhCCCEEEccccCccCCCCChhhcCCccccCCHHHHHHHhhC
Confidence 778888888887 777777776542 233456889999999987654322111000000 0001111 111 1335889
Q ss_pred CeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCC
Q psy11935 1052 DLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKV 1090 (1334)
Q Consensus 1052 d~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~ 1090 (1334)
|+||.+|+.+..-.+. + . .+ ..+.+++.||+..
T Consensus 273 Dlvl~iG~~~~~~~~~-~---~-~~-~~~~~~i~id~d~ 305 (589)
T 2pgn_A 273 DFVLVLGSRLSDWGIA-Q---G-YI-TKMPKFVHVDTDP 305 (589)
T ss_dssp SEEEEESCCCCTTTTT-T---T-TT-CCCCSEEEEESCG
T ss_pred CEEEEECCCccccccc-c---c-cc-CCCCeEEEEeCCH
Confidence 9999999977443322 1 1 11 2367999999753
No 331
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=31.11 E-value=98 Score=35.88 Aligned_cols=50 Identities=20% Similarity=0.353 Sum_probs=30.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 573 KAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVM 622 (1334)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~ 622 (1334)
+.++..++.+...+++.+++++.++..+.+.+.+.+..+..+..++.+++
T Consensus 9 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 9 KEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44444455555555566666666666666666666666666666666666
No 332
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=30.88 E-value=3.4e+02 Score=25.45 Aligned_cols=8 Identities=0% Similarity=0.082 Sum_probs=3.8
Q ss_pred HHHHHHHh
Q psy11935 133 QLKQISEN 140 (1334)
Q Consensus 133 ~ie~~~~~ 140 (1334)
+|+.+..+
T Consensus 97 iI~nFe~I 104 (119)
T 2avr_X 97 VISDFEKI 104 (119)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45555444
No 333
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=30.83 E-value=17 Score=31.75 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=20.5
Q ss_pred CcEEEEE-CCEEEEeCCCCcchhhhh
Q psy11935 663 EKFEVFI-DDKKVMVDPGTTVLQPVA 687 (1334)
Q Consensus 663 ~~~~~~i-dg~~~~v~~g~til~~~~ 687 (1334)
+.|.++. ||..+++|+|.|+++.+.
T Consensus 6 ~~i~v~tP~G~~~~lp~GaT~~D~A~ 31 (78)
T 3hvz_A 6 EEVFVFTPKGDVISLPIGSTVIDFAY 31 (78)
T ss_dssp CEEEEECTTSCEEEEETTCBHHHHHH
T ss_pred ceEEEECCCCCEEEecCCCCHHHHHH
Confidence 4566776 999999999999999443
No 334
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=30.72 E-value=2.9e+02 Score=24.62 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHhHhhh
Q psy11935 37 DEIQTLLAKSASIKTE 52 (1334)
Q Consensus 37 ~~i~~l~~~ie~l~~~ 52 (1334)
+++..+.+..-.+++.
T Consensus 21 eev~~lKq~RRtlKNR 36 (90)
T 2wt7_B 21 DEVIRLKQKRRTLKNR 36 (90)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhh
Confidence 3444455544455444
No 335
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=30.67 E-value=3.1e+02 Score=24.88 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=10.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Q psy11935 53 LREFYQTQLNNNQKAQDEIQTLLAK 77 (1334)
Q Consensus 53 ~~er~~~~~~~~~~l~~~i~~l~~~ 77 (1334)
...++......++.|+.++..++.-
T Consensus 60 ~~~~L~e~~~kid~L~~el~K~q~~ 84 (98)
T 2ke4_A 60 LEPQIAETLSNIERLKLEVQKYEAW 84 (98)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 336
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=30.46 E-value=63 Score=27.45 Aligned_cols=18 Identities=17% Similarity=0.318 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11935 418 KEKIESLERNLQTETQRS 435 (1334)
Q Consensus 418 ~~~~~~l~~~~~~l~~~~ 435 (1334)
++.+..|+.++..++...
T Consensus 28 ~~~i~~LE~~v~~le~~~ 45 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELH 45 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 337
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=30.23 E-value=11 Score=46.49 Aligned_cols=39 Identities=13% Similarity=0.111 Sum_probs=24.4
Q ss_pred ccccccccccccccccc-cCCcccCCCCcceeeeeecccCCC
Q psy11935 874 ELSGNVIDLCPVGALTS-KPYSFTARPWETRKTESVDVLDAV 914 (1334)
Q Consensus 874 ~~cg~cv~~CpvGAl~~-k~~~~~~r~we~~~~~s~c~~C~~ 914 (1334)
..||-|+++||+|++.. ..- ...+..+.....-|.+|+.
T Consensus 519 ~~~~~c~~~CPa~~~~~~~~~--~~~~~~~~i~~~~Ci~C~~ 558 (584)
T 2gmh_A 519 IYDGPEQRFCPAGVYEFVPLE--QGDGFRLQINAQNCVHCKT 558 (584)
T ss_dssp HHCCTHHHHCTTCCEEEEECS--STTCEEEEECGGGCCCCCH
T ss_pred hhcchhhhcCChhhEEEeecC--CCCceEEEEeCCCCcCCCC
Confidence 67899999999999954 110 0101123445566888874
No 338
>2qih_A Protein USPA1; trimeric, parallel alpha-helical coiled-coil, cell adhesion; 1.90A {Moraxella catarrhalis}
Probab=30.04 E-value=3.7e+02 Score=25.57 Aligned_cols=19 Identities=5% Similarity=-0.092 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy11935 493 IQTLLAKSASIKTELREFY 511 (1334)
Q Consensus 493 l~~l~~~~~~l~~~i~~~~ 511 (1334)
+.++...+...+..|+.+.
T Consensus 42 i~en~~~iakNqadI~~L~ 60 (157)
T 2qih_A 42 ANENKDGIAKNQADIQLHD 60 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHH
Confidence 3344444444444443333
No 339
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=29.90 E-value=3e+02 Score=27.09 Aligned_cols=73 Identities=18% Similarity=0.224 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 147 KTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVES 221 (1334)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 221 (1334)
+.++..++. ....+.+.-++...++...+...-.+-++....+++...+.......+..++.+++.++.++..
T Consensus 70 lTqL~nrL~--~wlsQ~em~~qks~EFSD~~qTaL~eAQ~AtD~y~~Ainny~~Ads~~~~lekKvn~aq~kLs~ 142 (201)
T 3u0c_A 70 LTALTNKIT--AWKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQIQTRLSE 142 (201)
T ss_dssp GHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 444555555 3333333333333444333333333333334444444444444455555555444444444443
No 340
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=29.73 E-value=4.6e+02 Score=26.67 Aligned_cols=11 Identities=27% Similarity=0.220 Sum_probs=8.9
Q ss_pred EEECCEEEEeC
Q psy11935 667 VFIDDKKVMVD 677 (1334)
Q Consensus 667 ~~idg~~~~v~ 677 (1334)
..|||..|--+
T Consensus 170 YsV~G~kVvGa 180 (242)
T 3c9i_A 170 YSVGGKKVVGA 180 (242)
T ss_dssp EEETTEEEECS
T ss_pred eeeCCEEEecc
Confidence 67999998765
No 341
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=29.34 E-value=2e+02 Score=25.83 Aligned_cols=14 Identities=14% Similarity=0.242 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHhh
Q psy11935 459 IVTVTLFLERLRSS 472 (1334)
Q Consensus 459 ~~~l~~~~~~~~~~ 472 (1334)
+..++..+.++++.
T Consensus 54 V~~lq~Ki~elkr~ 67 (96)
T 2ic9_A 54 VSALETKLGELKRE 67 (96)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 342
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=29.21 E-value=1.6e+02 Score=35.13 Aligned_cols=9 Identities=33% Similarity=0.744 Sum_probs=4.0
Q ss_pred HHHHHhCCC
Q psy11935 1010 DLLNKLGSE 1018 (1334)
Q Consensus 1010 ~l~~~lGs~ 1018 (1334)
.++..||-+
T Consensus 360 ~il~~LgLp 368 (501)
T 1wle_A 360 EILTELGLH 368 (501)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHCCCc
Confidence 344445543
No 343
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=29.12 E-value=6.8e+02 Score=28.41 Aligned_cols=54 Identities=7% Similarity=0.075 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 169 LMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESV 222 (1334)
Q Consensus 169 ~~~~~~~~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 222 (1334)
++..+....+.+...+.++......+++.++.......++.++++.+.-++-++
T Consensus 199 e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql 252 (373)
T 3hhm_B 199 EIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQL 252 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 344444455555555555555555555555555555555555554444444444
No 344
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=29.03 E-value=1.9e+02 Score=29.85 Aligned_cols=40 Identities=20% Similarity=0.139 Sum_probs=24.6
Q ss_pred ccccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCC
Q psy11935 1048 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKV 1090 (1334)
Q Consensus 1048 ie~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~ 1090 (1334)
+..-|++|++.... .+ |.+..-++.+ +++|++++.|....
T Consensus 129 ~~~~DvvI~iS~SG-~t-~~~i~~~~~a-k~~G~~vIaIT~~~ 168 (212)
T 2i2w_A 129 GREGDVLLGISTSG-NS-ANVIKAIAAA-REKGMKVITLTGKD 168 (212)
T ss_dssp CCTTCEEEEECSSS-CC-HHHHHHHHHH-HHHTCEEEEEEETT
T ss_pred CCCCCEEEEEECCC-CC-HHHHHHHHHH-HHCCCeEEEEECCC
Confidence 56678888876543 22 4333344444 46799999997643
No 345
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=28.91 E-value=53 Score=35.10 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=29.3
Q ss_pred cccccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCCCC
Q psy11935 1047 GAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDL 1092 (1334)
Q Consensus 1047 die~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~~~ 1092 (1334)
.+++||++|++|+.... .|. .++-..++.+|++++.|++..+.
T Consensus 164 ~~~~adl~lviGTSl~V-~Pa--~~l~~~a~~~g~~~i~iN~~~t~ 206 (235)
T 1s5p_A 164 ALSMADIFIAIGTSGHV-YPA--AGFVHEAKLHGAHTVELNLEPSQ 206 (235)
T ss_dssp HHHHCSEEEEESCCTTE-ETG--GGHHHHHHHTTCEEEEEESSSCC
T ss_pred HHhcCCEEEEECcCCch-hhH--HHHHHHHHHcCCeEEEEECCCCC
Confidence 45678999999997544 453 22222233578999999987654
No 346
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=28.89 E-value=2e+02 Score=26.43 Aligned_cols=15 Identities=13% Similarity=0.299 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHhhH
Q psy11935 459 IVTVTLFLERLRSSH 473 (1334)
Q Consensus 459 ~~~l~~~~~~~~~~~ 473 (1334)
+..++..+.++++.+
T Consensus 71 Vs~lq~KiaeLKrqL 85 (113)
T 4fi5_A 71 AVSIQAKIDELKRQL 85 (113)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 347
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=28.87 E-value=4.5e+02 Score=26.24 Aligned_cols=35 Identities=11% Similarity=0.068 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 188 KAELTQRDIKLKETNHLLKEESKKRELMAKKVESV 222 (1334)
Q Consensus 188 ~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 222 (1334)
|..+++++.++..+..-.+.....+.++-.-...+
T Consensus 121 P~rL~~ie~RL~~l~~L~RKyg~~~eell~~~~~~ 155 (175)
T 4abx_A 121 PEALDRVEARLSALSKLKNKYGPTLEDVVEFGAQA 155 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 45555666666555554444443344443333333
No 348
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=28.86 E-value=2.5e+02 Score=23.19 Aligned_cols=31 Identities=13% Similarity=0.233 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 418 KEKIESLERNLQTETQRSRKLEEELQDTRQT 448 (1334)
Q Consensus 418 ~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~ 448 (1334)
+.....++.+..+++.+-.+|+.+++.++.+
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444433333
No 349
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=28.81 E-value=2.7e+02 Score=23.64 Aligned_cols=58 Identities=10% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhHHHHHHHHHHHHHHHHH
Q psy11935 53 LREFYQTQLNNNQKAQDEIQTLLAKSASIKTELRE------FYQTQLNNNVKEKLKEFQTQLDSA 111 (1334)
Q Consensus 53 ~~er~~~~~~~~~~l~~~i~~l~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~~~~~l~~~ 111 (1334)
+..++.++..+.+.+.++++.+++++..+.++... .|++++.. -.-...+...+|.++
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L~~-E~~LK~QAVNKLAEI 65 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQLLT-ERTLKTQAVNKLAEI 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
No 350
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=28.69 E-value=3.2e+02 Score=28.83 Aligned_cols=15 Identities=20% Similarity=0.217 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy11935 174 KAKCEVYEAENKKLK 188 (1334)
Q Consensus 174 ~~~l~~l~~~l~~~~ 188 (1334)
.++|.++..+++.+.
T Consensus 176 ~sEI~EID~KI~~L~ 190 (242)
T 3uux_B 176 LSEIRDIEVEVENLR 190 (242)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 351
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=28.63 E-value=1.3e+02 Score=24.83 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 417 SKEKIESLERNLQTETQRSRKLEEELQDT 445 (1334)
Q Consensus 417 ~~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 445 (1334)
+..+...|+..-.+|..++..++.++..+
T Consensus 28 le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 28 LTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444433333
No 352
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=28.47 E-value=1e+02 Score=27.57 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 100 KLKEFQTQLDSAELTLHREFQQKEKTIVENAAK 132 (1334)
Q Consensus 100 ~~~~~~~~l~~~~~~l~~~~~~~~~~i~~~~~~ 132 (1334)
++..++..+-+++.....+.+..+++|..++.+
T Consensus 51 Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~e 83 (92)
T 3vp9_A 51 EMQQIRNTVYERELTHRKMKDAYEEEIKHLKLG 83 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555443
No 353
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=28.31 E-value=3.3e+02 Score=31.61 Aligned_cols=12 Identities=17% Similarity=0.224 Sum_probs=8.1
Q ss_pred HHHHHHHHhCCC
Q psy11935 1007 ALKDLLNKLGSE 1018 (1334)
Q Consensus 1007 ~~~~l~~~lGs~ 1018 (1334)
....++..||-+
T Consensus 301 ~~~~il~~LGL~ 312 (421)
T 1ses_A 301 NAEEILRLLELP 312 (421)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHCCCc
Confidence 455677778875
No 354
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=28.10 E-value=42 Score=40.92 Aligned_cols=108 Identities=17% Similarity=0.133 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhcc-CCEEEEeCCcCC-HHHHHHHHHHHHHhCCCccccCCC---CCcc--hhhhhhhhhccCCCCccccc
Q psy11935 977 EDALIAVAQKLQT-SEVAGVVGSLAD-AEAMVALKDLLNKLGSEDLYTEYA---FPLE--GAGTDLRANYLLNNKIAGAE 1049 (1334)
Q Consensus 977 deAl~~ia~~L~~-~~i~~~~g~~~~-~e~~~~~~~l~~~lGs~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~die 1049 (1334)
+++++.+++.|.. .+..+++|+... ......+.+|++++|.+.+.+..+ ++.. +...+... ++...... +.
T Consensus 191 ~~~v~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~~~p~~~G~~g-~~~~~~~~-~~ 268 (563)
T 2uz1_A 191 PADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVPVFADYEGLSMLSGLPDAMRGGLVQ-NLYSFAKA-DA 268 (563)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHHHCCCEEECGGGGGGGTTSCGGGEEEEGG-GGGGTTTT-TC
T ss_pred HHHHHHHHHHHHcCCCcEEEECCccccccHHHHHHHHHHHhCCcEEEcCcccCcCCCCCChhhcCCCC-CCCHHHHh-hc
Confidence 4678888888887 777777776542 233456889999999886654321 1111 10000000 11112233 88
Q ss_pred ccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCC
Q psy11935 1050 EADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKV 1090 (1334)
Q Consensus 1050 ~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~ 1090 (1334)
++|+||.+|+.+.......+ . .+...+.+++.||+..
T Consensus 269 ~aDlvl~iG~~~~~~~~~~~---~-~~~~~~~~~i~id~d~ 305 (563)
T 2uz1_A 269 APDLVLMLGARFGLNTGHGS---G-QLIPHSAQVIQVDPDA 305 (563)
T ss_dssp CCSEEEEESCCSSGGGTTTS---C-SSSCTTSEEEEECSCG
T ss_pred CCCEEEEECCCCcccccccc---c-ccCCCCCeEEEEECCH
Confidence 99999999998654322100 0 0111267999999764
No 355
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=28.04 E-value=3.1e+02 Score=26.48 Aligned_cols=96 Identities=11% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHhHhhh---HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 43 LAKSASIKTE---LREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQLDSAELTLHREF 119 (1334)
Q Consensus 43 ~~~ie~l~~~---~~er~~~~~~~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 119 (1334)
...+.+|+++ ...-+....+..+.+..+....-++-+....-.+.. ...+.. .+..+..+++++++++.+|..+.
T Consensus 19 ~~Sl~qL~nrla~~~am~~sqqq~~eqlS~eFqtal~eAq~Atd~ye~a-i~n~~s-A~~~~d~lekKl~~aq~kL~~L~ 96 (158)
T 3tul_A 19 DVSLSQLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEAS-IKKTDT-AKSVYDAATKKLTQAQNKLQSLD 96 (158)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHTC--CCTHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHTTC-
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccch-HHHHHHHHHHHHHHHHHHHhcCC
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHh
Q psy11935 120 ------QQKEKTIVENAAKQLKQISEN 140 (1334)
Q Consensus 120 ------~~~~~~i~~~~~~~ie~~~~~ 140 (1334)
......++.++.+..+..+..
T Consensus 97 P~~P~Yak~~a~~~q~~~d~~~~~~~~ 123 (158)
T 3tul_A 97 PADPGYAQAEAAVEQAGKEATEAKEAL 123 (158)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHH
No 356
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=28.03 E-value=48 Score=35.88 Aligned_cols=44 Identities=9% Similarity=0.138 Sum_probs=28.3
Q ss_pred cccccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCCCCc
Q psy11935 1047 GAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLR 1093 (1334)
Q Consensus 1047 die~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~~~t 1093 (1334)
.+.+||++|++|+.. .-.|.. ++...+...|++++.|+|..+..
T Consensus 180 ~~~~adl~lviGTSl-~V~P~~--~l~~~a~~~g~~~i~iN~~~~~~ 223 (253)
T 1ma3_A 180 EAKHCDAFMVVGSSL-VVYPAA--ELPYIAKKAGAKMIIVNAEPTMA 223 (253)
T ss_dssp HHHHCSEEEEESCCS-CEETGG--GHHHHHHHHTCEEEEEESSCCTT
T ss_pred HHHhCCEEEEECCCc-eeccHH--HHHHHHHHcCCeEEEEeCCCCCC
Confidence 445789999999843 234532 22222234689999999976543
No 357
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=27.92 E-value=1.3e+02 Score=33.68 Aligned_cols=17 Identities=12% Similarity=0.036 Sum_probs=7.5
Q ss_pred ccccccccccccccccc
Q psy11935 259 IDSTTDTNCPVTQQYVP 275 (1334)
Q Consensus 259 I~G~Vaeli~Vp~~Y~~ 275 (1334)
+-|+|.++---+-.|..
T Consensus 160 ~~G~V~~~~~~~G~~v~ 176 (341)
T 3fpp_A 160 MAGEVTQITTLQGQTVI 176 (341)
T ss_dssp SSEEEEEESSCTTCEEC
T ss_pred CCeEEEEEecCCCCEEe
Confidence 44555554433334443
No 358
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=27.84 E-value=2.2e+02 Score=25.47 Aligned_cols=17 Identities=6% Similarity=-0.054 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHhhHHH
Q psy11935 459 IVTVTLFLERLRSSHSK 475 (1334)
Q Consensus 459 ~~~l~~~~~~~~~~~~~ 475 (1334)
.+..++++.+++.+++.
T Consensus 70 Kq~YEeEI~rLr~eLe~ 86 (92)
T 3vp9_A 70 KDAYEEEIKHLKLGLEQ 86 (92)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455566666655543
No 359
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=27.83 E-value=73 Score=34.31 Aligned_cols=44 Identities=20% Similarity=0.190 Sum_probs=28.4
Q ss_pred cccccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCCCCc
Q psy11935 1047 GAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLR 1093 (1334)
Q Consensus 1047 die~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~~~t 1093 (1334)
.+.+||++|++|+.. .-.|.. ++...++..|++++.|+|..+..
T Consensus 174 ~~~~adlllviGTSl-~V~P~~--~l~~~a~~~g~~~i~IN~~~~~~ 217 (249)
T 1m2k_A 174 EVERADVIIVAGTSA-VVQPAA--SLPLIVKQRGGAIIEINPDETPL 217 (249)
T ss_dssp HHHHCSEEEEESCCS-CSTTGG--GHHHHHHHTTCEEEEECSSCCTT
T ss_pred HHhcCCEEEEEccCC-CccchH--HHHHHHHHcCCeEEEEeCCCCCC
Confidence 345689999999843 234532 22222335789999999976543
No 360
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=27.39 E-value=1.1e+02 Score=31.27 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=24.6
Q ss_pred cccccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccC
Q psy11935 1047 GAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK 1089 (1334)
Q Consensus 1047 die~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~ 1089 (1334)
.+..-|++|++..... .+.+..-++.+ +++|++++.|-..
T Consensus 110 ~~~~~DvvI~iS~SG~--t~~~i~~~~~a-k~~g~~vI~IT~~ 149 (199)
T 1x92_A 110 LGQPGDVLLAISTSGN--SANVIQAIQAA-HDREMLVVALTGR 149 (199)
T ss_dssp HCCTTCEEEEECSSSC--CHHHHHHHHHH-HHTTCEEEEEECT
T ss_pred CCCCCCEEEEEeCCCC--CHHHHHHHHHH-HHCCCEEEEEECC
Confidence 3566788888765432 33333334444 4789999999754
No 361
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=27.34 E-value=2.1e+02 Score=22.63 Aligned_cols=40 Identities=15% Similarity=0.105 Sum_probs=23.8
Q ss_pred hHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 404 LYTKTVRSVTLKISKEKIESLERNLQTETQRSRKLEEELQDT 445 (1334)
Q Consensus 404 ei~~L~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 445 (1334)
.+.+|..++ ..+.++...|...+.....++..++++++.+
T Consensus 10 r~~~l~~~l--~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 10 DIHQLEARI--DSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555555 5555565666666666666666666666543
No 362
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=27.05 E-value=2.8e+02 Score=23.69 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q psy11935 416 ISKEKIESLERNLQTETQRSRKLEEELQDTRQTCE-EVVRKEV 457 (1334)
Q Consensus 416 ~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~-e~~~~~~ 457 (1334)
.+++++..++..+..++.++..+-.++...+.++. .+..++.
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~ 46 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEK 46 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777777777766666655 4444433
No 363
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=26.94 E-value=4.4e+02 Score=25.45 Aligned_cols=77 Identities=19% Similarity=0.266 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy11935 19 TELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE-LREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQLNN 95 (1334)
Q Consensus 19 ~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~-~~er~~~~~~~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~ 95 (1334)
..+....+.+-..++.||+-++.+....-.-.-+ ....+++...+++.+..+++.+++-+...+---...+++.++.
T Consensus 17 ~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~ 94 (141)
T 3okq_A 17 TELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEAELDK 94 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHH
Confidence 3444445555555566666665555555544444 7778888888888888888888777655554444554555555
No 364
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=26.32 E-value=1.7e+02 Score=34.51 Aligned_cols=15 Identities=13% Similarity=0.104 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy11935 704 EMTRRAREGVMEFLL 718 (1334)
Q Consensus 704 ~~~~~~r~~~~~~ll 718 (1334)
|.....++.+..|++
T Consensus 190 p~ga~l~~aL~~~~~ 204 (455)
T 2dq0_A 190 NEIVILDLALIRFAL 204 (455)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 344444555555543
No 365
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=26.08 E-value=3.1e+02 Score=23.51 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHHhhHHHHHhh
Q psy11935 432 TQRSRKLEEELQDTRQTCE--EVVRKEVSIVTVTLFLERLRSSHSKRSKN 479 (1334)
Q Consensus 432 ~~~~~~l~~~l~~~~~~~~--e~~~~~~~~~~l~~~~~~~~~~~~~~~~e 479 (1334)
+--+..+.++|++..++-+ ++..-...+.+....+..+.++...+-.|
T Consensus 35 Q~~i~~Lt~eLq~A~~eaNpaeIA~~~~~L~qAraDL~~l~r~~av~g~E 84 (90)
T 4b6x_A 35 QLMVNNLTDELQDAIDEANPAEIANTSQQLRHARADLADLQRRFAVLRNE 84 (90)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3334444555555444444 55555555555555555555555554443
No 366
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=25.90 E-value=2.1e+02 Score=28.58 Aligned_cols=90 Identities=11% Similarity=-0.013 Sum_probs=47.3
Q ss_pred HHHHHHHHHhcc-CCEEEEeCCcCCHHHHHHHHHHHHHhCCCccccCCCCCcchhhhhhhhhccCCCCcccccccCeEEE
Q psy11935 978 DALIAVAQKLQT-SEVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEEADLILL 1056 (1334)
Q Consensus 978 eAl~~ia~~L~~-~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~die~ad~Il~ 1056 (1334)
+.++.+++.|.. .+|.+++.+....-..++..+| ..+|-+.... ... ....+..-|++|+
T Consensus 25 ~~i~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l-~~~g~~~~~~-~~~-----------------~~~~~~~~d~vI~ 85 (186)
T 1m3s_A 25 EEADQLADHILSSHQIFTAGAGRSGLMAKSFAMRL-MHMGFNAHIV-GEI-----------------LTPPLAEGDLVII 85 (186)
T ss_dssp HHHHHHHHHHHHCSCEEEECSHHHHHHHHHHHHHH-HHTTCCEEET-TST-----------------TCCCCCTTCEEEE
T ss_pred HHHHHHHHHHHcCCeEEEEecCHHHHHHHHHHHHH-HhcCCeEEEe-Ccc-----------------cccCCCCCCEEEE
Confidence 456777777776 7777655443323233333333 3455432111 000 1234556677777
Q ss_pred EcCCccccchhHHHHHHHHHhhCCCeEEEEccC
Q psy11935 1057 IGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK 1089 (1334)
Q Consensus 1057 ~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~ 1089 (1334)
+.... .+ +-+..-++.+ +++|++++.|...
T Consensus 86 iS~sG-~t-~~~~~~~~~a-k~~g~~vi~IT~~ 115 (186)
T 1m3s_A 86 GSGSG-ET-KSLIHTAAKA-KSLHGIVAALTIN 115 (186)
T ss_dssp ECSSS-CC-HHHHHHHHHH-HHTTCEEEEEESC
T ss_pred EcCCC-Cc-HHHHHHHHHH-HHCCCEEEEEECC
Confidence 76543 33 3333334444 4689999999764
No 367
>1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase, oxotransferase, molybdoenzyme, MO-cofactor, molybdenum; HET: 2MD; 2.50A {Shewanella massilia} SCOP: b.52.2.2 c.81.1.1
Probab=25.84 E-value=43 Score=43.05 Aligned_cols=50 Identities=10% Similarity=-0.132 Sum_probs=37.8
Q ss_pred CCcEEEEECCChhhh---------------HHhhcC---CCc-eEEEEcCCCChhhccc-cEEecCCCCC
Q psy11935 1192 PPKVLFLLGADEGSI---------------SRDDVG---KDC-FIIYQGHHGDHGASIA-DAILPGAAYT 1241 (1334)
Q Consensus 1192 ~ik~l~~~g~np~~~---------------~~~al~---k~~-fvV~~d~~~~eta~~A-DvVLP~a~~~ 1241 (1334)
..++++++|+||... ..++.. +-. -+|++|+..|.|+..| |..||...-+
T Consensus 210 ~ad~il~~G~Np~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~klivIDPr~t~ta~~a~d~~l~irPGt 279 (829)
T 1tmo_A 210 HSDTIVLWSNDPYKNLQVGWNAETHESFAYLAQLKEKVKQGKIRVISIDPVVTKTQAYLGCEQLYVNPQT 279 (829)
T ss_dssp HCSEEEEESCCHHHHTSCCSSBCCCTHHHHHHHHHHHHHHTSSEEEEECSSCCHHHHHHTCEEECCCTTC
T ss_pred hCCEEEEECCChhhccccccccccchHHHHHHHHHHHhhCCCceEEEECCCCCCcchhhcCEEecccCCC
Confidence 478999999999421 123333 344 6999999999999999 9999987654
No 368
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=25.16 E-value=56 Score=28.20 Aligned_cols=34 Identities=18% Similarity=0.427 Sum_probs=28.0
Q ss_pred HHhCCCCCCCCCCCCCCchhhhHHHhCCCCCccc
Q psy11935 718 LVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFT 751 (1334)
Q Consensus 718 l~~hp~~C~~c~~~g~c~lq~~~~~~g~~~~~~~ 751 (1334)
|.++-.+|.-|.-+|...|.+.+..+|.+...|.
T Consensus 23 f~~~G~~C~gC~~a~~~tLeeA~~~hgiD~d~ll 56 (76)
T 2k53_A 23 FINNGMHCLGCPSSMGESIEDACAVHGIDADKLV 56 (76)
T ss_dssp HHHTTCCCCSSCCCCCSBHHHHHHHHTCCHHHHH
T ss_pred HHHcCCCCCCCCccccccHHHHHHHcCCCHHHHH
Confidence 4566678999999999999999999999865553
No 369
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=25.14 E-value=8.8e+02 Score=28.41 Aligned_cols=9 Identities=33% Similarity=0.353 Sum_probs=4.4
Q ss_pred hhhHHHHHh
Q psy11935 240 HLHTSKESL 248 (1334)
Q Consensus 240 rl~~Vk~vL 248 (1334)
|+...|.+|
T Consensus 240 Ri~~lK~~L 248 (486)
T 3haj_A 240 RLRFFREVL 248 (486)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444455555
No 370
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=25.08 E-value=2.5e+02 Score=27.83 Aligned_cols=91 Identities=13% Similarity=0.093 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcc-CCEEEEeCCcCCHHHHHHHHHHHHHhCCCccccCCCCCcchhhhhhhhhccCCCCcccccccCeEEE
Q psy11935 978 DALIAVAQKLQT-SEVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEEADLILL 1056 (1334)
Q Consensus 978 eAl~~ia~~L~~-~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~die~ad~Il~ 1056 (1334)
+.++.+++.|.. ++|.+++.+....-..++..+| ..+|-+..... . . ....+..-|++|+
T Consensus 28 ~~i~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l-~~~g~~~~~~~-~---------~--------~~~~~~~~d~vi~ 88 (180)
T 1jeo_A 28 NKLDSLIDRIIKAKKIFIFGVGRSGYIGRCFAMRL-MHLGFKSYFVG-E---------T--------TTPSYEKDDLLIL 88 (180)
T ss_dssp HHHHHHHHHHHHCSSEEEECCHHHHHHHHHHHHHH-HHTTCCEEETT-S---------T--------TCCCCCTTCEEEE
T ss_pred HHHHHHHHHHHhCCEEEEEeecHHHHHHHHHHHHH-HHcCCeEEEeC-C---------C--------ccccCCCCCEEEE
Confidence 567777777776 7787655543333233333333 34665322111 0 0 1234556788888
Q ss_pred EcCCccccchhHHHHHHHHHhhCCCeEEEEccCC
Q psy11935 1057 IGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKV 1090 (1334)
Q Consensus 1057 ~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~ 1090 (1334)
+..... .+-...-++.+ +++|++++.|....
T Consensus 89 iS~sG~--t~~~~~~~~~a-k~~g~~vi~IT~~~ 119 (180)
T 1jeo_A 89 ISGSGR--TESVLTVAKKA-KNINNNIIAIVCEC 119 (180)
T ss_dssp EESSSC--CHHHHHHHHHH-HTTCSCEEEEESSC
T ss_pred EeCCCC--cHHHHHHHHHH-HHCCCcEEEEeCCC
Confidence 865432 23333334444 46899999997653
No 371
>1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor, DMSO, molybdopte oxidoreductase; HET: GLC MGD EPE; 1.30A {Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1 PDB: 4dmr_A* 1dmr_A* 1e5v_A* 1h5n_A* 2dmr_A* 3dmr_A* 1e61_A* 1e60_A* 1e18_A* 1dms_A*
Probab=24.84 E-value=45 Score=42.51 Aligned_cols=50 Identities=12% Similarity=0.036 Sum_probs=38.0
Q ss_pred CCcEEEEECCChhhh---------------HHhhcCCCceEEEEcCCCChhhccc-cEEecCCCCC
Q psy11935 1192 PPKVLFLLGADEGSI---------------SRDDVGKDCFIIYQGHHGDHGASIA-DAILPGAAYT 1241 (1334)
Q Consensus 1192 ~ik~l~~~g~np~~~---------------~~~al~k~~fvV~~d~~~~eta~~A-DvVLP~a~~~ 1241 (1334)
..++++++|+||... ..++..+-.-+|++|+..+.|+..| |..||...-+
T Consensus 177 ~ad~il~~G~N~~~~~~~~~~~~~~~~~~~l~~a~~~G~klivIDPr~t~ta~~aad~~l~irPGt 242 (780)
T 1eu1_A 177 NTDLMVFWAADPMKTNEIGWVIPDHGAYAGMKALKEKGTRVIAINPVRTETADYFGADVVSPRPQT 242 (780)
T ss_dssp HCSEEEEESCCHHHHTTCCSSBCCCHHHHHHHHHHHHTCEEEEESSBCCHHHHHHTCEEECCCTTC
T ss_pred hCCEEEEECCCHHHhcCCCCcccccchHHHHHHHHHCCCeEEEECCCCCCcccccCCEEeeeCCCC
Confidence 478999999999431 1233334456999999999999987 9999987654
No 372
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=24.62 E-value=3.1e+02 Score=22.98 Aligned_cols=33 Identities=15% Similarity=0.298 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 190 ELTQRDIKLKETNHLLKEESKKRELMAKKVESV 222 (1334)
Q Consensus 190 ~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 222 (1334)
++..-+.+|..++..+.-..+..+.+.+++-.+
T Consensus 26 eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiisl 58 (75)
T 3a7o_A 26 ELKSKEQEIRRLKEVIALKNKNTERLNDELISG 58 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHh
Confidence 333333344444444333444444444444444
No 373
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=24.53 E-value=6.1e+02 Score=26.32 Aligned_cols=205 Identities=9% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 10 LLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFY 89 (1334)
Q Consensus 10 ~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~~~er~~~~~~~~~~l~~~i~~l~~~~~~~~~~l~~~~ 89 (1334)
++..+-....++...+..+-......-+++......+........+.+.........+...+.+....+..+.+....+
T Consensus 1 qi~qva~a~~em~~~i~~i~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i- 79 (213)
T 3g67_A 1 RIEEVKERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEKISENIMEELKKSGTNVDQIVERVKEASSQIGETLENIRSI- 79 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_pred HHHHhHHHHH-----HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHhhhhhcc
Q psy11935 90 QTQLNNNVKE-----KLKEFQTQLDSAELTLHREF-QQKEKTIVENAAKQLKQISENEFKQKEKTIVENAAKQLKQISEK 163 (1334)
Q Consensus 90 ~~~~~~~~~~-----~~~~~~~~l~~~~~~l~~~~-~~~~~~i~~~~~~~ie~~~~~~~l~n~~~~~~~~~~~~~~~~~~ 163 (1334)
..-+.. +.. .+..++..++....--...- .-.-.++..+..+.-+...++. ..+..+....+ ......
T Consensus 80 ~~i~~~-I~~Ia~qtnlLALNAaIEAAraGe~GrGFaVVA~Evr~La~~t~~~~~~I~---~~i~~i~~~~~--~~~~~~ 153 (213)
T 3g67_A 80 EKLIQN-IMRIARETNILALNATIEAARAGEAGKGFMIVANEVQNLSNETNEVTKQIV---EKAREILESSQ--RSLENL 153 (213)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH--HHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHhHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH--HHHHHH
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 164 PGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVES 221 (1334)
Q Consensus 164 ~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 221 (1334)
.............+..+...+.+......++...+........+....+.+....+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~e~s~~i~~i~~~iee 211 (213)
T 3g67_A 154 EFMANLFETVGKTLQNMVRFMENNVKLLQEVRNSLDTSKESLSEKSAEIDSATKVLEE 211 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 374
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=24.25 E-value=3.8e+02 Score=23.87 Aligned_cols=11 Identities=0% Similarity=0.172 Sum_probs=4.1
Q ss_pred HHHHHHHHHHh
Q psy11935 224 QSQLQQAIHMI 234 (1334)
Q Consensus 224 ~~~~~~~~~~~ 234 (1334)
+.++..+++.+
T Consensus 73 qgEI~~Lnq~L 83 (99)
T 3ni0_A 73 ENEVTKLNQEL 83 (99)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 375
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=24.20 E-value=9.3e+02 Score=28.36 Aligned_cols=6 Identities=17% Similarity=0.052 Sum_probs=2.6
Q ss_pred ceEecc
Q psy11935 371 PVSDLE 376 (1334)
Q Consensus 371 RIVTLd 376 (1334)
||+-+.
T Consensus 466 ~~~~~~ 471 (517)
T 4ad8_A 466 HHYKVE 471 (517)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 444443
No 376
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=24.06 E-value=3.8e+02 Score=23.84 Aligned_cols=11 Identities=0% Similarity=-0.094 Sum_probs=4.7
Q ss_pred HHHHhHhhhhh
Q psy11935 136 QISENEFKQKE 146 (1334)
Q Consensus 136 ~~~~~~~l~n~ 146 (1334)
+.+..-.++|.
T Consensus 26 lKq~RRtlKNR 36 (90)
T 2wt7_B 26 LKQKRRTLKNR 36 (90)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhhhhh
Confidence 33344444444
No 377
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=23.96 E-value=1e+02 Score=37.40 Aligned_cols=115 Identities=9% Similarity=0.087 Sum_probs=57.6
Q ss_pred HHHHHHHHhcCCCcEEEEcCCc-ccHHHHHHHHHHHHHhhcCCCCCCCCCcccccch-hhh-hhhhhhhcCCC--cc-hh
Q psy11935 1113 SHPFSKKLSAAKKPLIVVGADI-SDGAAVLALVQQLAAKVTCESDVPCDWKVLNILQ-KAA-SQVAALDIGYK--PG-TS 1186 (1334)
Q Consensus 1113 ~~~~A~~l~~a~~~~ii~G~~~-~~g~~~~~al~~l~~~~g~~Gg~~~~~~~~~~l~-~~~-n~~G~~~~g~~--pg-~~ 1186 (1334)
+.++++.|..+++|+|++|.++ ..+ ....+..|+..+|.|= ...+.+-..++ .+. ...|.. |.. +. ..
T Consensus 197 i~~~~~~l~~a~rpvil~G~g~~~~~--a~~~l~~lae~~~~Pv--~~t~~~kg~~~~~~p~~~~G~~--g~~~~~~~~~ 270 (566)
T 1ozh_A 197 IDQVAKLIAQAKNPIFLLGLMASQPE--NSKALRRLLETSHIPV--TSTYQAAGAVNQDNFSRFAGRV--GLFNNQAGDR 270 (566)
T ss_dssp HHHHHHHHHHCSSEEEEECGGGGSGG--GHHHHHHHHHHHCCCE--EECGGGTTTCCTTTCTTEEEEC--SSBTTCHHHH
T ss_pred HHHHHHHHHcCCCeEEEECCCccccc--HHHHHHHHHHHHCCCE--EEccccCCcCCCCChHhhcCCC--cccCCHHHHH
Confidence 4567888999999999999987 222 2345666777776541 00111111111 111 122322 211 11 12
Q ss_pred hHhcCCCcEEEEECCChhhhHHhhc-CCCceEEEEcCCCChh--hccccEEe
Q psy11935 1187 AIREKPPKVLFLLGADEGSISRDDV-GKDCFIIYQGHHGDHG--ASIADAIL 1235 (1334)
Q Consensus 1187 ~i~~g~ik~l~~~g~np~~~~~~al-~k~~fvV~~d~~~~et--a~~ADvVL 1235 (1334)
.+. ..+.++.+|.++.......+ .+..-+|.+|+...+. ...+|+.+
T Consensus 271 ~l~--~aDlvl~lG~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i 320 (566)
T 1ozh_A 271 LLQ--LADLVICIGYSPVEYEPAMWNSGNATLVHIDVLPAYEERNYTPDVEL 320 (566)
T ss_dssp HHH--HCSEEEEESCCGGGSCGGGTCCSCSEEEEEESSCCCCBTTBCCSEEE
T ss_pred HHH--hCCEEEEECCCCCcCCccccCCCCCcEEEEeCCHHHhCCCCCCCEEE
Confidence 222 36889999997643212222 2233567777654332 23355544
No 378
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=23.95 E-value=34 Score=29.40 Aligned_cols=30 Identities=23% Similarity=0.170 Sum_probs=24.1
Q ss_pred EEEEECCEE---EEeCCCCcchhhhhhhcCCCC
Q psy11935 665 FEVFIDDKK---VMVDPGTTVLQPVAACAMPVM 694 (1334)
Q Consensus 665 ~~~~idg~~---~~v~~g~til~~~~ac~~~~~ 694 (1334)
|+|+++|.. +++|+|+||-++...-..|..
T Consensus 3 v~Vkl~g~~~~~~ev~~g~Tv~dLL~~Lgl~~~ 35 (74)
T 2l32_A 3 VTVEVVGEETSEVAVDDDGTYADLVRAVDLSPH 35 (74)
T ss_dssp EEEECSSSSEEEEECSTTCSHHHHHHTTCCCSS
T ss_pred EEEEEeCccceeEEcCCCCcHHHHHHHcCCCcc
Confidence 789999998 999999999996665554443
No 379
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=23.88 E-value=9e+02 Score=28.09 Aligned_cols=35 Identities=11% Similarity=0.141 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11935 199 KETNHLLKEESKKRELMAKKVESVMQSQLQQAIHMI 234 (1334)
Q Consensus 199 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (1334)
......++.|+..++.+..+++.+ +.....+....
T Consensus 159 ~~~~~~i~~l~~~~~~~~~~i~~l-~~~~~~~~~~c 193 (461)
T 3ghg_B 159 SNIPTNLRVLRSILENLRSKIQKL-ESDVSAQMEYC 193 (461)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHT
T ss_pred ccchhHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhc
Confidence 345556666666666666666666 55555444443
No 380
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=23.82 E-value=64 Score=34.70 Aligned_cols=44 Identities=9% Similarity=0.051 Sum_probs=28.4
Q ss_pred cccccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCCCCc
Q psy11935 1047 GAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLR 1093 (1334)
Q Consensus 1047 die~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~~~t 1093 (1334)
.+.+||++|++|+.. .-.|.. ++...++.+|++++.|+|..+..
T Consensus 177 ~~~~adl~lviGTSl-~V~P~~--~l~~~a~~~g~~~i~IN~~~~~~ 220 (246)
T 1yc5_A 177 LSSRASLMIVLGSSL-VVYPAA--ELPLITVRSGGKLVIVNLGETPF 220 (246)
T ss_dssp HHHHCSEEEEESCCS-CEETGG--GHHHHHHHHTCEEEEECSSCCTT
T ss_pred HHhcCCEEEEECCCC-cchhHH--HHHHHHHHcCCeEEEEeCCCCCC
Confidence 456789999999843 234532 22222234589999999976543
No 381
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=23.76 E-value=4.5e+02 Score=26.00 Aligned_cols=27 Identities=22% Similarity=0.100 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCChhhccccEEecCCC
Q psy11935 1213 KDCFIIYQGHHGDHGASIADAILPGAA 1239 (1334)
Q Consensus 1213 k~~fvV~~d~~~~eta~~ADvVLP~a~ 1239 (1334)
....++..+...++-+.+||++|+..+
T Consensus 114 g~~vi~IT~~~~s~l~~~ad~~l~~~~ 140 (187)
T 3sho_A 114 GVPTMALTDSSVSPPARIADHVLVAAT 140 (187)
T ss_dssp TCCEEEEESCTTSHHHHHCSEEEECCC
T ss_pred CCCEEEEeCCCCCcchhhCcEEEEecC
Confidence 567777777778888999999999765
No 382
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=23.68 E-value=4.7e+02 Score=26.29 Aligned_cols=46 Identities=2% Similarity=-0.018 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhh---HHHHHHHHHhhhHHHHHHH
Q psy11935 26 QTQLNNNQKAQDEIQTLLAKSASIKTE---LREFYQTQLNNNQKAQDEI 71 (1334)
Q Consensus 26 ~~l~~~~~~lq~~i~~l~~~ie~l~~~---~~er~~~~~~~~~~l~~~i 71 (1334)
++...+...+++++.....++..+-.. ...++..+.+++..++.++
T Consensus 81 ~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL 129 (175)
T 3lay_A 81 DDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKL 129 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444433322 4444544444444444433
No 383
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=23.56 E-value=62 Score=35.73 Aligned_cols=43 Identities=16% Similarity=0.204 Sum_probs=29.6
Q ss_pred cccccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCCCC
Q psy11935 1047 GAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDL 1092 (1334)
Q Consensus 1047 die~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~~~ 1092 (1334)
.+.+||++|++|+.... .|. +.....+ +.+|++++.|++..+.
T Consensus 213 ~~~~aDllLviGTSl~V-~Pa-a~l~~~a-~~~g~~~v~IN~~~t~ 255 (290)
T 3u31_A 213 EIAKCDLLLVIGTSSTV-STA-TNLCHFA-CKKKKKIVEINISKTY 255 (290)
T ss_dssp HHHHCSEEEEESCCSCS-HHH-HHHHHHH-HHTTCCEEEEESSCCT
T ss_pred HHhcCCEEEEECcCCcc-hhH-HHHHHHH-HHcCCEEEEECCCCCC
Confidence 45689999999997544 343 2223333 3578999999987543
No 384
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=23.25 E-value=82 Score=38.72 Aligned_cols=116 Identities=14% Similarity=0.196 Sum_probs=57.9
Q ss_pred HHHHHHHHhcCCCcEEEEcCCcccHHHHHHHHHHHHHhhcCCCCCCCCCcccccch-hhhhhhhhhhc-CCCcchhhHhc
Q psy11935 1113 SHPFSKKLSAAKKPLIVVGADISDGAAVLALVQQLAAKVTCESDVPCDWKVLNILQ-KAASQVAALDI-GYKPGTSAIRE 1190 (1334)
Q Consensus 1113 ~~~~A~~l~~a~~~~ii~G~~~~~g~~~~~al~~l~~~~g~~Gg~~~~~~~~~~l~-~~~n~~G~~~~-g~~pg~~~i~~ 1190 (1334)
+.++++.|..+++|+|++|.++.+. ...+..|+..+|.|= ...+.+-..++ .+....|...+ |..+....+.
T Consensus 202 i~~~~~~l~~A~rPvIl~G~g~~~a---~~~l~~lae~~~~PV--~~t~~gkg~~~~~hp~~~G~~g~~~~~~~~~~l~- 275 (603)
T 4feg_A 202 VTRLTQTLLAAERPLIYYGIGARKA---GKELEQLSKTLKIPL--MSTYPAKGIVADRYPAYLGSANRVAQKPANEALA- 275 (603)
T ss_dssp HHHHHHHHHHCSSEEEEECGGGTTC---HHHHHHHHHHHTCCE--EECGGGTTSSCTTCTTBCCCCSSSSCHHHHHHHH-
T ss_pred HHHHHHHHhcCCCeEEEECCCchhH---HHHHHHHHHHHCCCE--EEcCccccCCCCCChhhcccCcccCcHHHHHHHH-
Confidence 4567888999999999999888322 345666777776541 00111111111 11122232211 1111122232
Q ss_pred CCCcEEEEECCChhhhH-HhhcCCCceEEEEcCCCChh--hccccEEe
Q psy11935 1191 KPPKVLFLLGADEGSIS-RDDVGKDCFIIYQGHHGDHG--ASIADAIL 1235 (1334)
Q Consensus 1191 g~ik~l~~~g~np~~~~-~~al~k~~fvV~~d~~~~et--a~~ADvVL 1235 (1334)
..++++.+|..+.... ...+....-+|.+|+...+. ...+|+.+
T Consensus 276 -~aDlvl~iG~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i 322 (603)
T 4feg_A 276 -QADVVLFVGNNYPFAEVSKAFKNTRYFLQIDIDPAKLGKRHKTDIAV 322 (603)
T ss_dssp -HCSEEEEESCCCTTTTTTTTTTTCSEEEEEESCGGGTTSSSCCSEEE
T ss_pred -hCCEEEEECCCCCcccccccCCCCCeEEEEeCCHHHhCCccCCCEEE
Confidence 3688999999874211 11233334567777654432 23355544
No 385
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=23.18 E-value=4.4e+02 Score=24.19 Aligned_cols=61 Identities=11% Similarity=0.119 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 170 MLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQAI 231 (1334)
Q Consensus 170 ~~~~~~~l~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (1334)
+++...++.+++..+.++..-..++..-+.++...+..............+.. ..++..+.
T Consensus 16 i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g-~~eL~kA~ 76 (109)
T 3hd7_B 16 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERA-VSDTKKAV 76 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 33345566666666666666666666666666666666666666666666666 66665553
No 386
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=22.85 E-value=1.2e+02 Score=33.95 Aligned_cols=44 Identities=16% Similarity=0.125 Sum_probs=29.2
Q ss_pred ccccccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCCCC
Q psy11935 1046 AGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDL 1092 (1334)
Q Consensus 1046 ~die~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~~~ 1092 (1334)
..+.+||++|++|+..... |.... ...+ ..+|.+|++|++..+.
T Consensus 202 ~~~~~aDllLViGTSL~V~-Paa~l-~~~a-~~~G~~vviIN~~~t~ 245 (318)
T 3k35_A 202 EASRNADLSITLGTSLQIR-PSGNL-PLAT-KRRGGRLVIVNLQPTK 245 (318)
T ss_dssp HHHHTCSEEEEESCCCCST-TGGGH-HHHH-HHTTCEEEEECSSCCT
T ss_pred HHHhcCCEEEEEccCCCch-hhhhh-HHHH-HhcCCEEEEECCCCCC
Confidence 4567999999999975433 32111 1223 3578999999987543
No 387
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=22.83 E-value=69 Score=35.05 Aligned_cols=45 Identities=18% Similarity=0.137 Sum_probs=30.5
Q ss_pred ccccccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCCCCc
Q psy11935 1046 AGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLR 1093 (1334)
Q Consensus 1046 ~die~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~~~t 1093 (1334)
..+.+||++|++|+.... .|... .+..+. .+|++++.|++..+..
T Consensus 208 ~~~~~aDl~lviGTSl~V-~Paa~-l~~~a~-~~g~~~v~IN~~~t~~ 252 (273)
T 3riy_A 208 RELAHCDLCLVVGTSSVV-YPAAM-FAPQVA-ARGVPVAEFNTETTPA 252 (273)
T ss_dssp HHHHHCSEEEEESCCSCE-ETGGG-HHHHHH-HTTCCEEEEESSCCTT
T ss_pred HHHhcCCEEEEEeeCCcc-hhHHH-hHHHHH-HCCCEEEEECCCCCCC
Confidence 345789999999997644 45322 123333 5789999999876544
No 388
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=22.76 E-value=72 Score=26.29 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 420 KIESLERNLQTETQRSRKLEEELQDTRQ 447 (1334)
Q Consensus 420 ~~~~l~~~~~~l~~~~~~l~~~l~~~~~ 447 (1334)
.+..|+..+..+..+-..+..++..++.
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~ 50 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLRE 50 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444433333
No 389
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=22.49 E-value=2e+02 Score=21.63 Aligned_cols=16 Identities=13% Similarity=0.200 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11935 594 DIKLKETNHLLKEESK 609 (1334)
Q Consensus 594 ~~~~~~l~~~l~~~~~ 609 (1334)
..+++..++.+.+++.
T Consensus 15 drEI~Kte~kI~~lqk 30 (42)
T 2l5g_B 15 DREITMVEQQISKLKK 30 (42)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 390
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=22.47 E-value=1.6e+02 Score=34.43 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=12.7
Q ss_pred CCcEEEcCCHHHHHHHHHHHHHHhh
Q psy11935 800 KGWRVKTNSEMTRRAREGVMEFLLV 824 (1334)
Q Consensus 800 ~gm~i~t~s~~~r~~r~~~~~~ll~ 824 (1334)
.|+.+.. +.--..++.+..+++.
T Consensus 162 ~G~~~~~--p~ga~l~~~L~~~~~~ 184 (425)
T 2dq3_A 162 SRFTVIA--GWGARLERALINFMLD 184 (425)
T ss_dssp SSCCEEE--THHHHHHHHHHHHHHH
T ss_pred CCceEEC--cHHHHHHHHHHHHHHH
Confidence 4555666 5555556666555543
No 391
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=22.42 E-value=3.2e+02 Score=32.36 Aligned_cols=22 Identities=9% Similarity=-0.071 Sum_probs=14.1
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhCC
Q psy11935 803 RVKTNSEMTRRAREGVMEFLLVNH 826 (1334)
Q Consensus 803 ~i~t~s~~~r~~r~~~~~~ll~~h 826 (1334)
.+.. +.--.+++.+..+++..|
T Consensus 201 ~~~~--p~GarL~~aL~~f~~d~~ 222 (484)
T 3lss_A 201 YVLK--GGLVQLQVALVSYSLDFL 222 (484)
T ss_dssp CEEE--HHHHHHHHHHHHHHHHHH
T ss_pred EEEC--CHHHHHHHHHHHHHHHHH
Confidence 3666 666667777777766543
No 392
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=22.36 E-value=3.8e+02 Score=25.29 Aligned_cols=110 Identities=12% Similarity=0.071 Sum_probs=0.0
Q ss_pred HhHhhhhhHHHHHHHHHHhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 139 ENEFKQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLK----AELTQRDIKLKETNHLLKEESKKREL 214 (1334)
Q Consensus 139 ~~~~l~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~----~~l~~~~~~l~~l~~~~~~~~~~~~~ 214 (1334)
....+-+++......+. .....+..++.+...+...+..++.++.++. ...+.+.=..+..+..++--+....+
T Consensus 3 ~vtSL~~ELqEsqskL~--~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaalkmEr~~~~e 80 (130)
T 3cl3_D 3 MASGSLGELQESQSRLE--AATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASE 80 (130)
T ss_dssp --------------------------------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhccCCCCCCccc
Q psy11935 215 MAKKVESVMQSQLQQAIHMITSDVTHLHTSKESLATRQPSEQSLI 259 (1334)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~srl~~Vk~vL~~~~~~~~~gI 259 (1334)
-..++..+ +..+..+-+++... +|+.|....+ ..|+
T Consensus 81 EKrkLAqL-Q~AY~~LfqeYd~~------lK~~~~~~e~--~~~~ 116 (130)
T 3cl3_D 81 EKRKLAQL-QVAYHQLFQEYDNH------IKSSVVGSER--KRGM 116 (130)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHH------HHHHHCC---------
T ss_pred HHHHHHHH-HHHHHHHHHHHHHH------HHHHHHhhhh--hccc
No 393
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=22.21 E-value=9.6 Score=42.14 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=29.6
Q ss_pred cccccccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCCCC
Q psy11935 1045 IAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDL 1092 (1334)
Q Consensus 1045 ~~die~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~~~ 1092 (1334)
..++..||++|++|+.... .|. ..+..++ ..|+++++|++..+.
T Consensus 192 ~~~~~~aDlllviGTSl~V-~Pa--a~l~~~~-~~~~~~v~IN~~~~~ 235 (285)
T 3glr_A 192 VVDFPMADLLLILGTSLEV-EPF--ASLTEAV-RSSVPRLLINRDLVG 235 (285)
T ss_dssp HHHHHHCSEEEEESCCCCE-ETT--GGGGGSS-CTTSCEEEEESSCCT
T ss_pred HHHHhcCCEEEEeCCCCcc-ccH--HHHHHHH-hCCCcEEEECCCCcC
Confidence 4567899999999997544 342 1222233 467889999987653
No 394
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=22.07 E-value=1.6e+02 Score=36.15 Aligned_cols=41 Identities=24% Similarity=0.219 Sum_probs=30.8
Q ss_pred cHHHHHHHHhcCCCcEEEEcCCcccHHHHHHHHHHHHHhhcCC
Q psy11935 1112 GSHPFSKKLSAAKKPLIVVGADISDGAAVLALVQQLAAKVTCE 1154 (1334)
Q Consensus 1112 g~~~~A~~l~~a~~~~ii~G~~~~~g~~~~~al~~l~~~~g~~ 1154 (1334)
.+.++++.|..+++|+|++|.+... .....+..|+..+|.|
T Consensus 232 ~i~~~~~~l~~A~rPvIl~G~g~~~--~a~~~l~~lae~~~~P 272 (604)
T 2x7j_A 232 SLSDVAEMLAEAEKGMIVCGELHSD--ADKENIIALSKALQYP 272 (604)
T ss_dssp GGHHHHHHHHHCSSEEEEECCCCCH--HHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHhhcCCeEEEECCCCcH--HHHHHHHHHHHhcCce
Confidence 3567888999999999999988732 2345667777777665
No 395
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=21.97 E-value=2.8e+02 Score=21.47 Aligned_cols=36 Identities=11% Similarity=0.135 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 7 IQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTL 42 (1334)
Q Consensus 7 ~~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l 42 (1334)
++..+..++..++.++..+..+-.+.++.|..+..-
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqR 38 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQR 38 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666665555554433
No 396
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=21.40 E-value=2e+02 Score=28.71 Aligned_cols=39 Identities=18% Similarity=0.179 Sum_probs=24.0
Q ss_pred ccccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccC
Q psy11935 1048 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK 1089 (1334)
Q Consensus 1048 ie~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~ 1089 (1334)
+..-|++|++.... . .|.+..-++.+ +++|++++.|-..
T Consensus 108 ~~~~Dvvi~iS~sG-~-t~~~~~~~~~a-k~~g~~vi~iT~~ 146 (188)
T 1tk9_A 108 GNEKDVLIGISTSG-K-SPNVLEALKKA-KELNMLCLGLSGK 146 (188)
T ss_dssp CCTTCEEEEECSSS-C-CHHHHHHHHHH-HHTTCEEEEEEEG
T ss_pred CCCCCEEEEEeCCC-C-CHHHHHHHHHH-HHCCCEEEEEeCC
Confidence 45678888886543 2 23333334444 4689999998653
No 397
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=21.36 E-value=5.3e+02 Score=26.38 Aligned_cols=143 Identities=9% Similarity=0.073 Sum_probs=0.0
Q ss_pred hhHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 471 SSHSKRSKNA-DSLVRLQKAQDEIQTLLAKSASIKTELREFYQTQLN-NNVKEKLKEFQTQLDSAELTLHREFQQKEKTI 548 (1334)
Q Consensus 471 ~~~~~~~~e~-~~l~~~~~~~~~l~~l~~~~~~l~~~i~~~~~~~~~-~~l~~~l~~~~~~~a~le~~~~~~~~~~~~~~ 548 (1334)
.++..+-... +.+..-...+..+......+..+...++.+...... +.....+...-.++..++.++....+++...-
T Consensus 41 ~eL~~LL~~~~dlL~~~v~~l~~~q~~~~~~e~l~s~ae~ll~l~~~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~~~~l 120 (192)
T 2p22_C 41 KEIIDLIQTHRHQLELYVTKFNPLTDFAGKIHAFRDQFKQLEENFEDLHEQKDKVQALLENARILESKYVASWQDYHSEF 120 (192)
T ss_dssp HHHHHHHHHCHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhchhhhhhhhhhHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 549 VENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKL--KAELTQRDIKLKETNHLLKEESKKRELMAKK 617 (1334)
Q Consensus 549 ~~~~~~~~~~~l~~~~~ei~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~ 617 (1334)
.. --.-..-...+...+.+. +++.+.+.....+- +.++.++-.+.......+--.+.+...+.++
T Consensus 121 s~--~~sp~~L~~~L~~a~~e~--eeeS~~l~~~F~~~~~e~dv~~Fl~~y~~~R~~yH~RreK~~rw~e~ 187 (192)
T 2p22_C 121 SK--KYGDIALKKKLEQNTKKL--DEESSQLETTTRSIDSADDLDQFIKNYLDIRTQYHLRREKLATWDKQ 187 (192)
T ss_dssp HH--TSSHHHHHHHHHHHHHHH--HHHHHHHHHSCSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hc--cCCHHHHHHHHHHHHHHH--HHHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 398
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=21.21 E-value=3.8e+02 Score=22.89 Aligned_cols=49 Identities=4% Similarity=0.024 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 574 AKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVM 622 (1334)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~ 622 (1334)
.+.+.++..+..++.++.++..++...-..+..+-+-+..++.+|...|
T Consensus 5 ~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYR 53 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYR 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666666666666666666777777777777
No 399
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=21.21 E-value=1.1e+02 Score=24.51 Aligned_cols=31 Identities=13% Similarity=-0.007 Sum_probs=16.8
Q ss_pred hhHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHH
Q psy11935 403 ALYTKTVRSVTLKISKEKIESLERNLQTETQRS 435 (1334)
Q Consensus 403 ~ei~~L~~~~~~~~~~~~~~~l~~~~~~l~~~~ 435 (1334)
.+.+.|+.+. ++++.++..|.++++++..++
T Consensus 19 ~d~eaLk~E~--~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLEL--AEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666 555555555555555554443
No 400
>2ap3_A Conserved hypothetical protein; structural genomics, tetra helix, PSI, protein structure INI midwest center for structural genomics; 1.60A {Staphylococcus aureus subsp} SCOP: a.24.27.1
Probab=21.17 E-value=6.8e+02 Score=25.68 Aligned_cols=121 Identities=8% Similarity=0.137 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh------------HHHHHHHHHhhhHHHHH
Q psy11935 2 KAQDEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTE------------LREFYQTQLNNNQKAQD 69 (1334)
Q Consensus 2 ~~l~~~~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ie~l~~~------------~~er~~~~~~~~~~l~~ 69 (1334)
...........+.-...++.+..+..-...++..+.+...+.+-++.++.. .++|+.....-...+..
T Consensus 59 ~~~~~v~~~adqa~~nv~eRek~l~kEk~si~~s~kef~~~k~~i~kIeD~~~Kkqa~~l~~~~k~RY~~~~~l~~~Y~k 138 (199)
T 2ap3_A 59 KDTAVRGKAVKDLIKNADDRLKEFEKEEDAIKKSEQDFKKAKSHVDNIDNDVKRKEVKQLDDVLKEKYKLHSDYAKAYKK 138 (199)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 70 EIQTLLAKSASIKTE---LREFYQTQLNNNVKEKLKEFQTQLDSAELTLHREFQQKEK 124 (1334)
Q Consensus 70 ~i~~l~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 124 (1334)
-|..-++--.-+..+ +..+ ..+++. ++...++...+..+....++......+.
T Consensus 139 ~l~~EKeLy~~Lk~k~~~~~~l-~eki~~-vN~~y~~~~~~FN~yTk~yN~~~kek~~ 194 (199)
T 2ap3_A 139 AVNSEKTLFKYLNQNDATQQGV-NEKSKA-IEQNYKKLKEVSDKYTKVLNKVQKEKQD 194 (199)
T ss_dssp HHHHHHHHHHHHTSTTCCHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccCCCHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 401
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=21.01 E-value=5.3e+02 Score=24.35 Aligned_cols=18 Identities=11% Similarity=-0.091 Sum_probs=10.0
Q ss_pred HHHHHHHhhchhhhhhhh
Q psy11935 553 AKQLKQISEKPGATKLML 570 (1334)
Q Consensus 553 ~~~~~~~l~~~~~ei~~~ 570 (1334)
+..++..++.++.++..+
T Consensus 70 i~eL~~kvA~le~e~~~~ 87 (125)
T 2pms_C 70 IDELDAEIAKLEDQLKAA 87 (125)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555555554
No 402
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=20.97 E-value=51 Score=40.21 Aligned_cols=109 Identities=10% Similarity=-0.026 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhcc-CCEEEEeCCcCC-HHHHHHHHHHHHHhCCCccccCCCCCcchhhhhh-hhhc-cC-CCC--ccccc
Q psy11935 977 EDALIAVAQKLQT-SEVAGVVGSLAD-AEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDL-RANY-LL-NNK--IAGAE 1049 (1334)
Q Consensus 977 deAl~~ia~~L~~-~~i~~~~g~~~~-~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~-~~~~-~~-~~~--~~die 1049 (1334)
.++++.+++.|.. .+..+++|+... ......+.+|++++|.+.+.+..+-...+....+ ...| ++ +.. ..-+.
T Consensus 198 ~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~g~g~~~~~~p~~~G~~~g~~~~~~~~~~l~ 277 (563)
T 2vk8_A 198 KEVIDTILVLDKDAKNPVILADACCSRHDVKAETKKLIDLTQFPAFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVE 277 (563)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHCCCEEECTTTTTSSCTTSTTEEEECCGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEECcCccccchHHHHHHHHHHhCCCEEECcccCccCCCCCCcccccccCccCCHHHHHHHH
Confidence 4678888888887 777777776532 2234568899999999876543221110000000 0011 11 111 12368
Q ss_pred ccCeEEEEcCCccccchhHHHHHHHHHhhCCCeEEEEccCC
Q psy11935 1050 EADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKV 1090 (1334)
Q Consensus 1050 ~ad~Il~~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~ 1090 (1334)
++|+||++|+.+.......+. . ...+.++|.||+..
T Consensus 278 ~aDlvl~iG~~~~~~~~~~~~---~--~~~~~~~i~id~d~ 313 (563)
T 2vk8_A 278 SADLILSVGALLSDFNTGSFS---Y--SYKTKNIVEFHSDH 313 (563)
T ss_dssp TCSEEEEESCCCCTTTTTTTC---C--CCCCSCEEEECSSE
T ss_pred hCCEEEEECCCCccccccccc---c--CCCCCeEEEEeCCc
Confidence 899999999976433221110 0 11357899999864
No 403
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=20.72 E-value=2.1e+02 Score=31.98 Aligned_cols=16 Identities=13% Similarity=0.054 Sum_probs=8.7
Q ss_pred eeeeecccCCCCCceEE
Q psy11935 904 KTESVDVLDAVGSNIIV 920 (1334)
Q Consensus 904 ~~~s~c~~C~~gC~i~v 920 (1334)
.+...|-+.. |.|..|
T Consensus 100 pf~V~CDm~t-ggGWtv 115 (323)
T 1lwu_C 100 PFLVFCEIEN-GNGWTV 115 (323)
T ss_dssp CEEEEEEECS-SCEEEE
T ss_pred cEEEEEeccc-CCceEE
Confidence 3445566665 555544
No 404
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=20.62 E-value=1e+03 Score=27.44 Aligned_cols=63 Identities=10% Similarity=-0.008 Sum_probs=33.3
Q ss_pred HHHHHHHhhchhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 553 AKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKK 617 (1334)
Q Consensus 553 ~~~~~~~l~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~ 617 (1334)
+...+.++...+..++.+ ..+......+.......+....++...++..+....++..+-.++
T Consensus 358 lddArNEItsaeSaInsl--qaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~KiAE~KrK 420 (602)
T 1cii_A 358 LLDARNKITSAESAVNSA--RNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIAEEKRK 420 (602)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHh
Confidence 555555555555555555 555544444444555555555555666655555555543333333
No 405
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=20.49 E-value=5.3e+02 Score=24.14 Aligned_cols=29 Identities=10% Similarity=0.179 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 517 NNVKEKLKEFQTQLDSAELTLHREFQQKE 545 (1334)
Q Consensus 517 ~~l~~~l~~~~~~~a~le~~~~~~~~~~~ 545 (1334)
...+.-+..++.-+..|+.++...+..+.
T Consensus 71 ~eY~~L~KkYk~~~~~Ld~eI~~qe~iI~ 99 (119)
T 2avr_X 71 SQYQELASKYEDALKKLEAEMEQQKAVIS 99 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444433
No 406
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=20.40 E-value=1.4e+02 Score=30.00 Aligned_cols=97 Identities=18% Similarity=0.151 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcc-CCEEEEeCCcCCHHHHHHHHHHHHHhCCCccccCCCCCcchhhhhhhhhccCCCCcccccccCeEEE
Q psy11935 978 DALIAVAQKLQT-SEVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEEADLILL 1056 (1334)
Q Consensus 978 eAl~~ia~~L~~-~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~die~ad~Il~ 1056 (1334)
+.++.+++.|.. ++|.+++.+....-..++..+ +..+|-+......+ + ..+.. ....+..-|++|+
T Consensus 27 ~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~-l~~~g~~~~~~~~~----~--~~~~~------~~~~~~~~d~~i~ 93 (187)
T 3sho_A 27 EAIEAAVEAICRADHVIVVGMGFSAAVAVFLGHG-LNSLGIRTTVLTEG----G--STLTI------TLANLRPTDLMIG 93 (187)
T ss_dssp HHHHHHHHHHHHCSEEEEECCGGGHHHHHHHHHH-HHHTTCCEEEECCC----T--HHHHH------HHHTCCTTEEEEE
T ss_pred HHHHHHHHHHHhCCEEEEEecCchHHHHHHHHHH-HHhcCCCEEEecCC----c--hhHHH------HHhcCCCCCEEEE
Confidence 456667777766 777665544433333333333 34566643222100 0 11100 1123445677777
Q ss_pred EcCCccccchhHHHHHHHHHhhCCCeEEEEccCC
Q psy11935 1057 IGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKV 1090 (1334)
Q Consensus 1057 ~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~~ 1090 (1334)
+... ..+ +-+..-++.+ +++|++++.|....
T Consensus 94 iS~s-G~t-~~~~~~~~~a-k~~g~~vi~IT~~~ 124 (187)
T 3sho_A 94 VSVW-RYL-RDTVAALAGA-AERGVPTMALTDSS 124 (187)
T ss_dssp ECCS-SCC-HHHHHHHHHH-HHTTCCEEEEESCT
T ss_pred EeCC-CCC-HHHHHHHHHH-HHCCCCEEEEeCCC
Confidence 7543 222 3333334444 46899999997643
No 407
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=20.36 E-value=2.6e+02 Score=20.47 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 189 AELTQRDIKLKETNHLLKEESKKR 212 (1334)
Q Consensus 189 ~~l~~~~~~l~~l~~~~~~~~~~~ 212 (1334)
+++..++.+++.+++++..++..+
T Consensus 20 eelaaleselqalekklaalkskl 43 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 408
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=20.31 E-value=3.3e+02 Score=24.67 Aligned_cols=27 Identities=22% Similarity=0.014 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q psy11935 537 LHREFQQKEKTIVENAAKQLKQISEKPGA 565 (1334)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 565 (1334)
...+++.+.+++.+ ++.......-+.+
T Consensus 17 kkkL~~Ki~el~~e--i~ke~~~regl~K 43 (98)
T 2ke4_A 17 RKRLQQQLEERSRE--LQKEVDQREALKK 43 (98)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 33444444444444 4444444333333
No 409
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=20.20 E-value=2.8e+02 Score=28.22 Aligned_cols=90 Identities=9% Similarity=0.003 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcc-CCEEEEeCCcCCHHHHHHHHHHHHHhCCCccccCCCCCcchhhhhhhhhccCCCCcccccccCeEEE
Q psy11935 978 DALIAVAQKLQT-SEVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEEADLILL 1056 (1334)
Q Consensus 978 eAl~~ia~~L~~-~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~die~ad~Il~ 1056 (1334)
+.++.+++.|.. ++|.+++.+....-..++..+| ..+|.+..... +. ....+..-|++|+
T Consensus 35 ~~l~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l-~~~g~~~~~~~----------~~--------~~~~~~~~DvvI~ 95 (200)
T 1vim_A 35 ETVGEMIKLIDSARSIFVIGAGRSGYIAKAFAMRL-MHLGYTVYVVG----------ET--------VTPRITDQDVLVG 95 (200)
T ss_dssp HHHHHHHHHHHHSSCEEEECSHHHHHHHHHHHHHH-HHTTCCEEETT----------ST--------TCCCCCTTCEEEE
T ss_pred HHHHHHHHHHhcCCEEEEEEecHHHHHHHHHHHHH-HhcCCeEEEeC----------Cc--------cccCCCCCCEEEE
Confidence 566777777766 7777655443323233333333 34554322110 00 1124556788888
Q ss_pred EcCCccccchhHHHHHHHHHhhCCCeEEEEccC
Q psy11935 1057 IGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK 1089 (1334)
Q Consensus 1057 ~G~np~~~~p~~~~rir~a~~~~g~kiivIdp~ 1089 (1334)
+.... . .|-+..-++.+ +++|++++.|...
T Consensus 96 iS~SG-~-t~~~i~~~~~a-k~~g~~vI~IT~~ 125 (200)
T 1vim_A 96 ISGSG-E-TTSVVNISKKA-KDIGSKLVAVTGK 125 (200)
T ss_dssp ECSSS-C-CHHHHHHHHHH-HHHTCEEEEEESC
T ss_pred EeCCC-C-cHHHHHHHHHH-HHCCCeEEEEECC
Confidence 86543 2 23332333444 4679999999764
No 410
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=20.12 E-value=3.5e+02 Score=21.88 Aligned_cols=43 Identities=26% Similarity=0.234 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11935 3 AQDEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAK 45 (1334)
Q Consensus 3 ~l~~~~~~~~~~e~~~~~~~~~l~~l~~~~~~lq~~i~~l~~~ 45 (1334)
+.-++.+.+...|.+.+++-+-...+.+++..+|..+..+.++
T Consensus 14 eylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQse 56 (63)
T 2w6a_A 14 EYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAE 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhh
Confidence 3455666666666666665555555555444444444444433
No 411
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=20.10 E-value=1.2e+02 Score=36.73 Aligned_cols=93 Identities=9% Similarity=-0.091 Sum_probs=50.5
Q ss_pred CCEEEEeCCcCCHHHHHHHHHHHHHhCCCccccC-CCCCcchhhhhhhhhccCCCCcccccccCeEEEEcCCccccchhH
Q psy11935 990 SEVAGVVGSLADAEAMVALKDLLNKLGSEDLYTE-YAFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLF 1068 (1334)
Q Consensus 990 ~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~die~ad~Il~~G~np~~~~p~~ 1068 (1334)
.+..+++|+. .......+.+|++++|.+.+.+. ....... ..+....+......-+.+||+||.+|+.+.....
T Consensus 220 ~rPvIl~G~~-~~~a~~~l~~lae~~~~PV~~t~~~~~~~~~--~~~~~~lg~~~~~~~~~~aDlvl~iG~~~~~~~~-- 294 (556)
T 3hww_A 220 KRGVVVAGRM-SAEEGKKVALWAQTLGWPLIGDVLSQTGQPL--PCADLWLGNAKATSELQQAQIVVQLGSSLTGKRL-- 294 (556)
T ss_dssp SCEEEEECBC-CHHHHHHHHHHHHHHTCCEEECTTTCSCCSS--CCHHHHTTSHHHHHHHTTCSEEEEESBCCCCHHH--
T ss_pred CCeEEEECCC-ChHHHHHHHHHHHhcCCEEEEccCCCCCCCc--CcHHHHhcCchhhhcccCCCEEEEcCCCcccHHH--
Confidence 5666677764 44556678899999999866542 1111000 0011011110112345799999999998743221
Q ss_pred HHHHHHHHhhCCCeEEEEccCC
Q psy11935 1069 NARIRKGYLTNELDVAYIGPKV 1090 (1334)
Q Consensus 1069 ~~rir~a~~~~g~kiivIdp~~ 1090 (1334)
..+... . ...++|.||+..
T Consensus 295 ~~~~~~-~--~~~~~i~id~d~ 313 (556)
T 3hww_A 295 LQWQAS-C--EPEEYWIVDDIE 313 (556)
T ss_dssp HHHHHH-C--CCSEEEEEESSC
T ss_pred HHHHhc-C--CCCeEEEECCCC
Confidence 122222 1 234899998764
No 412
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=20.07 E-value=5.7e+02 Score=26.02 Aligned_cols=20 Identities=10% Similarity=0.052 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11935 66 KAQDEIQTLLAKSASIKTEL 85 (1334)
Q Consensus 66 ~l~~~i~~l~~~~~~~~~~l 85 (1334)
.+...+..+..++.|..+++
T Consensus 70 ~l~~~~~~l~~qL~P~~~e~ 89 (191)
T 1nfn_A 70 ELKAYKSELEEQLTPVAEET 89 (191)
T ss_dssp HHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHhcchhHHHH
Confidence 33344444555555554433
Done!