RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11935
(1334 letters)
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport,
respiratory chain, cell flavoprotein, FMN, iron,
iron-sulfur, membrane; HET: FMN; 3.10A {Thermus
thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3*
3m9s_3*
Length = 783
Score = 648 bits (1673), Expect = 0.0
Identities = 155/700 (22%), Positives = 252/700 (36%), Gaps = 130/700 (18%)
Query: 685 PVAACAMPVMKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFG 744
A+C V G V T S++ R A+ G++EF L+NHPLDCP CD+GG C+LQD+++ +G
Sbjct: 79 LAASCVTAVADGMVVDTLSDVVREAQAGMVEFTLLNHPLDCPTCDKGGACELQDRTVEYG 138
Query: 745 SDRSRFTDIDFSGKSGTYTRVTRQRSWGLIPSRVFLQSINRHWIGPVAACAMPVMKGWRV 804
+ T TR R + + P V
Sbjct: 139 LYEKYYQKGPLELPVYTRFEFTR---------RHVDKHHP---LSPF------------V 174
Query: 805 KTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGNDLGTTGRGSDMQVG 864
+ R C C C + + L RG +G
Sbjct: 175 IL--DRER-----------------CIHC---KRCVRYFEEVPGDEVLDFIERGVHTFIG 212
Query: 865 TYVEKLFLSELSGNVIDLCPVGALTSKPYSFTARPWETRKTESVDVLDAVGSNIIVSTRT 924
T + S SGN+ D+CPVGAL F AR WE +T + L VG I TR+
Sbjct: 213 TM-DFGLPSGFSGNITDICPVGALLDLTARFRARNWEMEETPTTCALCPVGCGITADTRS 271
Query: 925 GEVLRVLPRLNEDINEEWLADKGRFAYDGLKRQRLLTPFVRNCDGQLVATEWEDALIAVA 984
GE+LR+ R ++NE W+ D GRF ++ + RL TP VR +G+LV WE+A +A+
Sbjct: 272 GELLRIRAREVPEVNEIWICDAGRFGHEWADQNRLKTPLVRK-EGRLVEATWEEAFLALK 330
Query: 985 QKLQT---SEVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLL 1041
+ L+ EV + A E + +L L + L + T A+
Sbjct: 331 EGLKEARGEEVGLYLAHDATLEEGLLASELAKALKTPHLDFQ-------GRTAAPASLFP 383
Query: 1042 NNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYL------------------------ 1077
+ +AD L++G +P EAP+ + R+ +
Sbjct: 384 PASLEDLLQADFALVLG-DPTEEAPILHLRLSEFVRDLKPPHRYNHGTPFADLQIKERMP 442
Query: 1078 TNELDVAYIGP------KVDLRYDYEHLGESADLIKQLASGSHP------FSKKLSAAKK 1125
+A P K ++ GE +++ L + AK
Sbjct: 443 RRTDKMALFAPYRAPLMKWAAIHEVHRPGEEREILLALLGDKEGSEMVAKAKEAWEKAKN 502
Query: 1126 PLIVVGADISDGAAVLALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAALDIGYKPGT 1185
P++++GA + + LA + + + AA+ +G PG
Sbjct: 503 PVLILGAGVLQDTVAAERARLLAER---------KGAKVLAMTPAANARGLEAMGVLPGA 553
Query: 1186 SAIREKPPKVLFLLGADEGSISRDDVGKDCFIIYQGHHGDHGASIADAILPGAAYTEKQS 1245
P L+ GK +++ H A +LP + EK+
Sbjct: 554 KGASWDEPGALYAYYGFV-PPEEALKGKRFVVMHLSHLHPLAERYAHVVLPAPTFYEKRG 612
Query: 1246 TYVNTEGRAQQTLTAVTPPGLAREDWKIIRALSEGV------------------------ 1281
VN EGR A G A +++ L+E +
Sbjct: 613 HLVNLEGRVLPLSPAPIENGEAEGALQVLALLAEALGVRPPFRLHLEAQKALKARKVPEA 672
Query: 1282 SSNLSSEPVDVK-QKNLEDYYMTDPISRASGTMAKCIQAV 1320
LS +++ ++ +Y+ + +A + K +A
Sbjct: 673 MGRLSFRLKELRPKERKGAFYLRPTMWKAHQAVGKAQEAA 712
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur
binding, oxidoreductase; HET: HCN; 1.39A {Clostridium
pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB:
1c4c_A* 1c4a_A* 1feh_A*
Length = 574
Score = 84.0 bits (208), Expect = 1e-16
Identities = 19/120 (15%), Positives = 36/120 (30%), Gaps = 36/120 (30%)
Query: 667 VFIDDKKVMVDPGTTVLQ---------P---------------------------VAACA 690
+ I+ + D TT+L+ V AC
Sbjct: 4 IIINGVQFNTDEDTTILKFARDNNIDISALCFLNNCNNDINKCEICTVEVEGTGLVTACD 63
Query: 691 MPVMKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRF 750
+ G + TNS+ + + LL H C C++ C+ + + + S+
Sbjct: 64 TLIEDGMIINTNSDAVNEKIKSRISQLLDIHEFKCGPCNRRENCEFLKLVIKYKARASKP 123
Score = 74.8 bits (184), Expect = 9e-14
Identities = 13/59 (22%), Positives = 23/59 (38%)
Query: 791 VAACAMPVMKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFG 849
V AC + G + TNS+ + + LL H C C++ C+ + +
Sbjct: 59 VTACDTLIEDGMIINTNSDAVNEKIKSRISQLLDIHEFKCGPCNRRENCEFLKLVIKYK 117
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 84.5 bits (208), Expect = 2e-16
Identities = 99/665 (14%), Positives = 210/665 (31%), Gaps = 218/665 (32%)
Query: 1 QKAQDEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQ 60
+ QD +++L+K E+ ++ + TLL+K + +++F +
Sbjct: 36 KDVQDMPKSILSK-----EEIDHIIMSK-DAVSGTLRLFWTLLSKQEEM---VQKFVEEV 86
Query: 61 LNNNQK-AQDEIQTLLAKSASIKTELREFYQTQLNNNVK-------------EKLKEFQT 106
L N K I+T + S+ T + + +L N+ + KL++
Sbjct: 87 LRINYKFLMSPIKTE-QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145
Query: 107 QLDSAE-LTLH-----------------------REFQ---------QKEKTIVENAAKQ 133
+L A+ + + +F+ +T++E K
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 134 LKQISEN-----EFKQKEKTIVENAAKQLKQ-ISEKPGATKLM-LD----------FKAK 176
L QI N + K + + +L++ + KP L+ L F
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265
Query: 177 CEVYEAENKKLKAELTQRDIKL------KETNH---------LLKEESKKRELMAKKVES 221
C++ L LT R ++ T H L +E K L+ K
Sbjct: 266 CKI-------L---LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK--SLLLKY--- 310
Query: 222 VMQSQLQQAIHMITSDVTHLHTSKESLATRQPSEQSLIDSTTDTNCPVTQQYVPSSNQQY 281
L + L P E + P + S +
Sbjct: 311 -------------------LDCRPQDL----PREVLTTN-------PRRLSIIAESIRDG 340
Query: 282 APSSNQQYSIPTSNINQQYSMFSADSTHMNIVERDIPN-SADDMRKYIEMQYSMFSADST 340
++ + + + I+E + + RK + + S+F +
Sbjct: 341 -LATWDNW--------KHVNC----DKLTTIIESSLNVLEPAEYRKMFD-RLSVFPPSA- 385
Query: 341 HMNIVERDIPNSADDMRKYIEMLLEKPPGNPVSDLEAEVKDSAGPMTSFLESSVTSDIFN 400
IP + ++ + V + ++ S +E +
Sbjct: 386 -------HIP------TILLSLIWFDVIKSDVMVVVNKLHKY-----SLVEKQPKESTIS 427
Query: 401 EPALYTKTVRSVTLKISKEKIESLERNLQTETQRSRKLEEE------------------L 442
P++Y + LK+ E +L R++ + + + L
Sbjct: 428 IPSIYLE------LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481
Query: 443 QDTRQTCEEVVRKEVSIVTVTL-FLER-LRSSHSKRSKNA-----DSLVRLQKAQDEIQT 495
++ E + +V + FLE+ +R H + NA ++L +L+ + I
Sbjct: 482 KNIEHP-ERM--TLFRMVFLDFRFLEQKIR--HDSTAWNASGSILNTLQQLKFYKPYI-- 534
Query: 496 LLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQLDSAELT--LHREFQQKEKTIVENAA 553
+ Y+ +L N + + L + + L ++ T L +++ I E A
Sbjct: 535 ---------CDNDPKYE-RLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584
Query: 554 KQLKQ 558
KQ+++
Sbjct: 585 KQVQR 589
Score = 69.9 bits (170), Expect = 5e-12
Identities = 89/550 (16%), Positives = 163/550 (29%), Gaps = 179/550 (32%)
Query: 341 HMN--IVERDIPNSADDMRKYIEMLLEKPPGNPVSDLEA-EVKDSAGPMTSFLESSVTSD 397
HM+ E + + + + V + + +V+D S L
Sbjct: 6 HMDFETGEHQYQY-----KDILSVFEDAF----VDNFDCKDVQDM---PKSILSKEEIDH 53
Query: 398 IFNEPALYTKTVRSV-TLKISKEKI------ESLERN-------LQTET-QRSRKLE--E 440
I + T+R TL +E++ E L N ++TE Q S
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 441 ELQDTRQTCEEVVRKEVSIVTVTLFLERLRSSHSKRSKNADSLVRLQKAQDEI------- 493
E +D +V K + RL+ R L+ L+ A++ +
Sbjct: 114 EQRDRLYNDNQVFAK--------YNVSRLQPYLKLRQA----LLELRPAKNVLIDGVLGS 161
Query: 494 -QTLLAKSASIKTELREF-YQTQLNNNV--------------KEKLKEFQTQLDSAELTL 537
+T +A + Q +++ + E L++ Q+D T
Sbjct: 162 GKTWVALDV-----CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP-NWTS 215
Query: 538 HREFQQKEKTIVENAAKQLKQ-ISEKPGATKLM-LD----------FKAKCEVYEAENKK 585
+ K + + +L++ + KP L+ L F C++
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI------- 268
Query: 586 LKAELTQRDIKL------KETNH---------LLKEESKKRELMAKKVESVMQS---QLQ 627
L LT R ++ T H L +E K L+ K ++ Q ++
Sbjct: 269 L---LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK--SLLLKYLDCRPQDLPREVL 323
Query: 628 Q----AIHMI---------TSDVTHLHVLPCVRVLSPVKTLSTSAVNN----------EK 664
+ +I T D HV + T+ S++N ++
Sbjct: 324 TTNPRRLSIIAESIRDGLATWD-NWKHVN-----CDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 665 FEVFIDDKKVMVDPGTTVLQPVAACAMPVMKGWRVKTNSEMTRRAREGVMEFL----LVN 720
VF + P T +L + W ++ + V+ L LV
Sbjct: 378 LSVFPPSAHI---P-TILLSLI----------W-----FDVIKSDVMVVVNKLHKYSLVE 418
Query: 721 -HPLDCPICDQGGECDLQDQSMAFGSDRSRFTDIDFSGKSGTYTRVTRQRSWGLIPSRV- 778
P + I +L+ + + D Y S LIP +
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVD--------HYNIPKTFDSDDLIPPYLD 470
Query: 779 --FLQSINRH 786
F I H
Sbjct: 471 QYFYSHIGHH 480
Score = 59.9 bits (144), Expect = 5e-09
Identities = 62/437 (14%), Positives = 116/437 (26%), Gaps = 144/437 (32%)
Query: 957 QRLLTPFVRNCDGQLVATEWEDALIAVAQKLQTSEVAGVVGSLADAEAMVALKDLLNKLG 1016
FV N D + V +D ++ L E+ ++ S + L L
Sbjct: 23 SVFEDAFVDNFDCKDV----QDMPKSI---LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 1017 SEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGY 1076
E F LR NY +
Sbjct: 76 EE---MVQKF----VEEVLRINY-----------------------------------KF 93
Query: 1077 LTNELDVAYIGPKVDLR-YDYEHLGESADLIKQLASGSHPFSK-------KLSAAKKPL- 1127
L + + P + R Y + +L + + F+K ++ L
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQR--------DRLYNDNQVFAKYNVSRLQPYLKLRQALL 145
Query: 1128 -------IVV----GADISDGAAVLALVQQLAAKVTCESDVPCDW----------KVLNI 1166
+++ G+ G +AL L+ KV C+ D W VL +
Sbjct: 146 ELRPAKNVLIDGVLGS----GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 1167 LQKAASQV-----AALDIGYKPGTSA----------IREKP-PKVLFLLGADEGSISRDD 1210
LQK Q+ + D ++ KP L +L +
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL---------LN 252
Query: 1211 VGKDCFIIYQGHHGDHG---------ASIADAILPGAAYTEKQSTYVN---TEGRAQQTL 1258
V ++ + + + D L A T + + T + L
Sbjct: 253 V-QNAKAW---NAFNLSCKILLTTRFKQVTDF-LSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 1259 TAVT---PPGLAREDWKII-RALSEGVSSNLSSEPVDVKQKNLEDYYMTDPISRASGTMA 1314
P L RE R LS ++ ++ D + + + +
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLS-IIAESIRDGL------ATWDNWKHVNCDKLTTIIE 360
Query: 1315 KCIQAVHKQKQSKYYEE 1331
+ + + K ++
Sbjct: 361 SSLNVLEPAEYRKMFDR 377
Score = 59.9 bits (144), Expect = 6e-09
Identities = 112/763 (14%), Positives = 218/763 (28%), Gaps = 277/763 (36%)
Query: 538 HREFQQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKL 597
H +F+ E + K + + E F + + + ++ + +
Sbjct: 6 HMDFETGE---HQYQYKDILSVFED--------AFVDNFDCKDVQ------DMPKSILSK 48
Query: 598 KETNHLLKE--------------ESKKRELMAKKVESVMQSQ---LQQAIHMITSDVTHL 640
+E +H++ SK+ E++ K VE V++ L I
Sbjct: 49 EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ---- 104
Query: 641 HVLPCVRVLSPVKTLSTSAVNNEKFEVFIDDKKVMVDPGTTVLQPVAACAMPVMKGWRVK 700
++ T ++I+ D Q A V R+
Sbjct: 105 ------------PSMMT--------RMYIEQ----RDRLYNDNQVFAK--YNV---SRL- 134
Query: 701 TNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFTDIDFSGKSG 760
+ + R+ ++E L + G + GS GK+
Sbjct: 135 ---QPYLKLRQALLE--LRPAKN---VLIDG---------VL-GS-----------GKTW 165
Query: 761 TYTRVTRQRSW-GLIPSRVFLQSINRHWIGPVAACAMPVMKGWRVKTNSEMTRRAREGVM 819
V + ++F W+ + C P E V+
Sbjct: 166 VALDVCLSYKVQCKMDFKIF-------WLN-LKNCNSP------------------ETVL 199
Query: 820 EFLL-VNHPLDCPICDQGGECDLQDQSMAFGNDLGTTGRGSDMQVGTYVEKLFLSELSGN 878
E L + + +D + D S S++++ + + L L
Sbjct: 200 EMLQKLLYQIDPNWTSRS------DHS-------------SNIKLRIHSIQAELRRL--- 237
Query: 879 VIDLCPVGALTSKPYSFTARPWETRKTESVDVLDAV-----------GSNIIVSTRTGEV 927
L SKPY + VL V I+++TR +V
Sbjct: 238 ---------LKSKPY-----------ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 928 LRVL--------------PRLNEDINEEWLADKGRFAYDGLKRQRLLT-PFVRNCDGQLV 972
L L D + L L R+ L T P + ++
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS----II 333
Query: 973 ATE-------WEDALIAVAQKLQTSEVAGVVGSLADAEAMVALKDLLNKLGSED---LYT 1022
A W++ KL T ++ LN L + ++
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTT-----------------IIESSLNVLEPAEYRKMFD 376
Query: 1023 EYA-FP--------------LEGAGTDLR------ANYLLNNKIAGAEEA-----DLILL 1056
+ FP + +D+ Y L K +E+ + L
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK--QPKESTISIPSIYLE 434
Query: 1057 IGTNPRFEAPLFNARIRKGY-LTNELDVAYIGPKVDLRYDYEHLG---ESADLIKQLASG 1112
+ E L + I Y + D + P +Y Y H+G ++ + +++
Sbjct: 435 LKVKLENEYAL-HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL- 492
Query: 1113 SHPFSKK---LSAAKKPLIVVGADISDGAAVLALVQQLA--AKVTCESDVPCDWKVLNIL 1167
F ++ + + ++L +QQL C++D P +++N +
Sbjct: 493 ---FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND-PKYERLVNAI 548
Query: 1168 QKAASQVAALDIGYKPGTSAIREKPPKVL-FLLGADEGSISRD 1209
LD K + I K +L L A++ +I +
Sbjct: 549 ---------LDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
Score = 41.0 bits (95), Expect = 0.003
Identities = 83/578 (14%), Positives = 160/578 (27%), Gaps = 207/578 (35%)
Query: 885 VGALTSKPYSFTARPWETRK----------TESVDVLDAVGSNIIVS----TRTGEVLRV 930
V + Y F P +T + E D L N + + +R L++
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL--YNDNQVFAKYNVSRLQPYLKL 140
Query: 931 LPRLNEDINEEWL-------ADKGRFAYDGLKRQRLLTPFVRNCDGQLVATEWEDALIAV 983
L E + + + K A D ++ D ++ W + +
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM----DFKIF---W----LNL 189
Query: 984 AQKLQTSEVAGVVGSLADAEAMVALKDLLNKLGSE-----DLYTEYAFPLEGAGTDLRAN 1038
V + L+ LL ++ D + + +LR
Sbjct: 190 KNCNSPETV------------LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR-- 235
Query: 1039 YLLNNKIAGAEEADLILLIGTNPR-FEAPLFNARI----RKGYLTNELDVAYIGPKVDLR 1093
LL +K E L+LL N + + A + +I R +T+ L A +
Sbjct: 236 RLLKSK--PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT---TTHIS 290
Query: 1094 YDYEHLGESADLIKQLASGSHPFSKKLS--------AAKK--PLIV--VGADISDGAAVL 1141
D+ + + D +K L K L P + + I DG A
Sbjct: 291 LDHHSMTLTPDEVKSL------LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 1142 ---------ALVQQLAAKVTC------------------ESDVPCD-----WK------V 1163
L + + + + +P W V
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 1164 LNILQKAASQVAALDIGYKPGTSAIREKPPKVLFLL---GADEGSISR------------ 1208
+ ++ K + ++ K T +I P + L +E ++ R
Sbjct: 405 MVVVNKLHKY-SLVEKQPKESTISI----PSIYLELKVKLENEYALHRSIVDHYNIPKTF 459
Query: 1209 --DDVGKDC----FIIYQGHHGDHGASIADAILPGAAYTEKQST----YVNTEGRAQQTL 1258
DD+ F + GHH L + E+ + +++
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHH-----------LKNIEHPERMTLFRMVFLDF-------- 500
Query: 1259 TAVTPPGLAREDW---KIIRALSEGVSSNLSSEPVDVKQKNLEDY--YMTD--P------ 1305
+ KI + + N S ++ Q L+ Y Y+ D P
Sbjct: 501 -----------RFLEQKIRH---DSTAWNASGSILNTLQ-QLKFYKPYICDNDPKYERLV 545
Query: 1306 ------ISRASGTMAKC-----IQAVHKQKQSKYYEEA 1332
+ + + ++ + +EEA
Sbjct: 546 NAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583
>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete
proteome, direct protein sequencing, Fe4S4, iron, iron
sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli}
SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A*
Length = 715
Score = 68.0 bits (167), Expect = 1e-11
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 1228 ASIADAILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPGLAREDWKIIRALS 1278
AS AD ILP ++ E + + + Q+ AV P + DW+II ++
Sbjct: 436 ASAADVILPSTSWGEHEGVFTAADRGFQRFFKAVEPKWDLKTDWQIISEIA 486
Score = 64.9 bits (159), Expect = 1e-10
Identities = 36/204 (17%), Positives = 62/204 (30%), Gaps = 67/204 (32%)
Query: 913 AVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYD-----GLKRQRLLTPFVR-N 966
A G I + G+++R N+ L KG + +D + RL TP +R
Sbjct: 12 ASGCKINLVVDNGKIVRAEAA-QGKTNQGTLCLKGYYGWDFINDTQILTPRLKTPMIRRQ 70
Query: 967 CDGQLVATEWEDALIAVAQKLQT-------SEVAGVVGS--------------------- 998
G+L W++AL VA++L + S
Sbjct: 71 RGGKLEPVSWDEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETNYVMQKFARAVIGT 130
Query: 999 --------LADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEE 1050
+ ++ L +G+ GA + N I +
Sbjct: 131 NNVDCCARVXHGPSVAGLHQ---SVGN------------GAMS---------NAINEIDN 166
Query: 1051 ADLILLIGTNPRFEAPLFNARIRK 1074
DL+ + G NP P+ +
Sbjct: 167 TDLVFVFGYNPADSHPIVANHVIN 190
>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor,
dissimilatory nitrate reductase; HET: MGD MES; 1.90A
{Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1
PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A*
2jio_A*
Length = 723
Score = 66.1 bits (162), Expect = 5e-11
Identities = 16/52 (30%), Positives = 21/52 (40%)
Query: 1228 ASIADAILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPGLAREDWKIIRALSE 1279
AD +LP A + E+ Y E R T AV PPG R + +
Sbjct: 452 LEYADLVLPPAFWCERDGVYGCGERRYSLTEKAVDPPGQCRPTVNTLVEFAR 503
Score = 56.4 bits (137), Expect = 5e-08
Identities = 45/245 (18%), Positives = 76/245 (31%), Gaps = 81/245 (33%)
Query: 913 AVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGLK-RQRLLTPFVR-NCDGQ 970
G ++V + G+ + + + N L KG L ++R+ P VR + G+
Sbjct: 17 GTGCGVLVGVKDGKAVAIQGN-PNNHNAGLLCLKGSLLIPVLNSKERVTQPLVRRHKGGK 75
Query: 971 LVATEWEDALIAVAQKLQTSEVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEG 1030
L W++AL +A + + + G ++ A GS TE
Sbjct: 76 LEPVSWDEALDLMASRFR--SSIDMYG--PNSVAW---------YGSGQCLTE------- 115
Query: 1031 AGTDLRANYLLNNKIA----------------------------GA----------EEAD 1052
+Y+ NKI G ++A
Sbjct: 116 ------ESYVA-NKIFKGGFGTNNVDGNPRLCMASAVGGYVTSFGKDEPMGTYADIDQAT 168
Query: 1053 LILLIGTNPRFEA-PLFNARIRKGYLTNELDVAYIGPK---VDLRYDYEHLGESADLIKQ 1108
+IG+N EA P+ RI + G K D R + AD+
Sbjct: 169 CFFIIGSNT-SEAHPVLFRRIARRKQVEP------GVKIIVADPRRT--NTSRIADMHVA 219
Query: 1109 LASGS 1113
G+
Sbjct: 220 FRPGT 224
>3ml1_A NAPA, periplasmic nitrate reductase; heterodimer, oxidoreductase;
HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_A*
1ogy_A* 2nya_A*
Length = 802
Score = 65.9 bits (161), Expect = 6e-11
Identities = 19/51 (37%), Positives = 24/51 (47%)
Query: 1228 ASIADAILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPGLAREDWKIIRALS 1278
A AD +LP A + EK+ Y N E R Q V PG AR D + +
Sbjct: 490 ALAADLVLPSAMWVEKEGAYGNAERRTQFWHQLVDAPGEARSDLWQLVEFA 540
Score = 59.7 bits (145), Expect = 5e-09
Identities = 36/254 (14%), Positives = 72/254 (28%), Gaps = 61/254 (24%)
Query: 897 ARPWETRKTESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGLK- 955
+ + + +++ G + V+ + +V+ ++N+ KG F +
Sbjct: 7 SEVTKLKWSKAPCRFCGTGCGVTVAVKDNKVVATQGDPQAEVNKGLNCVKGYFLSKIMYG 66
Query: 956 RQRLLTPFVR------NCDGQLVATEWEDALIAVAQKLQT-------SEVAGVV-GSLAD 1001
+ RL P +R + +G W+ A + ++ + + V G
Sbjct: 67 QDRLTRPLMRMKNGKYDKNGDFAPVTWDQAFDEMERQFKRVLKEKGPTAVGMFGSGQWTV 126
Query: 1002 AEAMVALKDLLNKLG---------------SEDLYTEYAFPL---EGAGTDLRANYLLNN 1043
E A K L K G S F
Sbjct: 127 WEGYAAAK--LYKAGFRSNNIDPNARHCMAS----AAAGFMRTFGMDEPM---------G 171
Query: 1044 KIAGAEEADLILLIGTNPRFEA-PLFNARIRKGYLTNELDVAYIGPK---VDLRYDYEHL 1099
E AD +L G+N E P+ R+ L++ + +
Sbjct: 172 CYDDFEAADAFVLWGSNM-AEMHPILWTRVTDRRLSHP------KTRVVVLSTFTH--RC 222
Query: 1100 GESADLIKQLASGS 1113
+ AD+ +
Sbjct: 223 FDLADIGIIFKPQT 236
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 66.2 bits (161), Expect = 7e-11
Identities = 79/533 (14%), Positives = 136/533 (25%), Gaps = 209/533 (39%)
Query: 3 AQDEIQT---LLAK-----------------SASIKTELREFYQTQLNNNQKAQDEIQTL 42
A DE T L+ K + L EF L N +I L
Sbjct: 50 ADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN-----DIHAL 104
Query: 43 LA--------KSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKT----------- 83
A K ++ + ++ + + + L ++
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG 164
Query: 84 -------ELREFYQTQLNNNVKEKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQ 136
ELR+ YQT + + +++ +A+ L +
Sbjct: 165 NTDDYFEELRDLYQT------------YHVLV---------------GDLIKFSAETLSE 197
Query: 137 ISENEFKQK---EKTIVENAAKQLKQISEKPGATKLMLDFKAKCEV------------YE 181
+ + + + N + L+ S P D+ + Y
Sbjct: 198 LIRTTLDAEKVFTQGL--NILEWLENPSNTPDK-----DYLLSIPISCPLIGVIQLAHYV 250
Query: 182 AENKKLK---AELTQRDIKLKETNH-------LLKEESKKRELMAKKVESVMQ------S 225
K L EL R T H + E+ E V +
Sbjct: 251 VTAKLLGFTPGEL--RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGV 308
Query: 226 QLQQAIHMITSDVTHLHTSKES--------LATRQPSEQSLIDSTTDTNC--PVTQQ--- 272
+ +A + + L S E+ L+ +++ + D TN P +Q
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI 368
Query: 273 --------YV----PSS----NQQY----APSSNQQYSIPTSNINQQYSMFSAD------ 306
V P S N APS Q IP S ++ FS
Sbjct: 369 SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS---ERKLKFSNRFLPVAS 425
Query: 307 ---STHMNIVERDIPNSADDMRKYIEMQYSMFSADSTHMNIVERDIP----NSADDMRKY 359
S + I D ++ + F+A IP D+R
Sbjct: 426 PFHSHLLVPASDLIN--KDLVKNNVS-----FNAKDIQ-------IPVYDTFDGSDLRVL 471
Query: 360 --------IEMLLEKP------------------PGNP--VSDLEAEVKDSAG 384
++ ++ P PG + L KD G
Sbjct: 472 SGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTG 524
Score = 64.7 bits (157), Expect = 2e-10
Identities = 108/703 (15%), Positives = 197/703 (28%), Gaps = 275/703 (39%)
Query: 340 THMNI-VERDIPNS----ADDMRKYIEMLLEKPPGN------PVSDLE----------AE 378
+H ++ +P + A +++ +L +P P + E +
Sbjct: 12 SHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSL 71
Query: 379 V-KDSAGPMTSFLESSVTSDIFNEPALYTKTVRSVTLKISKEKIESLERNLQTETQRSRK 437
V G L +T F L + ++ K+ +E T K
Sbjct: 72 VEPSKVGQFDQVLNLCLTE--FENCYLEGNDIHALAAKLLQE---------NDTTLVKTK 120
Query: 438 LEEELQDTRQTCEEVVRKEVSIVTVTLFLERLRSSHSKRSKNADSLVRLQKAQDEIQTLL 497
E+++ ++ + K ++S + + +
Sbjct: 121 -------------ELIKN---------YITARIMAKRPFDKKSNSAL-FRAVGEG----- 152
Query: 498 AKSASIKT-------------ELREFYQT------QLNNNVKEKLKEFQTQLDSAELTLH 538
+A + ELR+ YQT L E L E AE
Sbjct: 153 --NAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210
Query: 539 REFQQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEV------------YEAENKKL 586
+ N + L+ S P D+ + Y K L
Sbjct: 211 QGL---------NILEWLENPSNTPDK-----DYLLSIPISCPLIGVIQLAHYVVTAKLL 256
Query: 587 K---AELTQRDIKLKETNH-------LLKEESKKRELMAKKVESVMQ------SQLQQA- 629
EL R T H + E+ E V + + +A
Sbjct: 257 GFTPGEL--RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY 314
Query: 630 ------IHMITSDVTHLHVLPCVRVLSPVKTLSTSAVNNEKFEVFIDDKKVMVDPGTTVL 683
++ + + +P SP+ LS S + E+ + +++
Sbjct: 315 PNTSLPPSILEDSLENNEGVP-----SPM--LSISNLTQEQVQDYVN------------- 354
Query: 684 QPVAACAMPVMKGWRVKTNSEMTRRAREGVMEFLLVN---------HPLDCPICDQGGEC 734
KTNS + +E LVN P G
Sbjct: 355 ----------------KTNSHL---PAGKQVEISLVNGAKNLVVSGPPQSL----YGLNL 391
Query: 735 DLQDQSMAFGSDRSRFTDIDFSGKSGTYTRVTRQRSWGLIPSRVFLQSINRHWIGPVAAC 794
L+ G D+SR I FS +R L S FL PVA+
Sbjct: 392 TLRKAKAPSGLDQSR---IPFS-----------ER--KLKFSNRFL---------PVAS- 425
Query: 795 AMPVMKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAF-GNDLG 853
P +S + A + + + DL +++F D+
Sbjct: 426 --PF--------HSHLLVPASDLINK-------------------DLVKNNVSFNAKDIQ 456
Query: 854 T----TGRGSDMQVGTYVEKLFLSELSGNVI-DLCPVGALTSKPYSFTARPWE-TRKTES 907
T GSD++ LSG++ + + P WE T + ++
Sbjct: 457 IPVYDTFDGSDLR-----------VLSGSISERIVD--CIIRLPVK-----WETTTQFKA 498
Query: 908 VDVLD-------AVGSNIIVSTRTGEVLRVLP--RLNEDINEE 941
+LD +G + + G +RV+ L+ + +++
Sbjct: 499 THILDFGPGGASGLGV-LTHRNKDGTGVRVIVAGTLDINPDDD 540
Score = 62.0 bits (150), Expect = 1e-09
Identities = 109/688 (15%), Positives = 177/688 (25%), Gaps = 306/688 (44%)
Query: 712 GVMEF-LLVNHPLDCPICDQGGECDLQDQ--------SMAFGSDR---------SRFTDI 753
G +E LLV I Q LQ+Q + F +D +F +
Sbjct: 14 GSLEHVLLVPTAS-FFIASQ-----LQEQFNKILPEPTEGFAADDEPTTPAELVGKF--L 65
Query: 754 DF------SGKSGTYTRVTRQRSWGLIPS--RVFLQSINRHWIGPVAACAMPVMKGWRVK 805
+ K G + +V + +L+ + H A + +
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNL----CLTEFENCYLEGNDIH----ALAAKLLQENDTTLV 117
Query: 806 TNSEMTR---RAREGVMEFLLVNHPLDCPI------CDQGGECDLQDQSMA-FGNDLGTT 855
E+ + AR + P D G L +A FG
Sbjct: 118 KTKELIKNYITARI------MAKRPFDKKSNSALFRAVGEGNAQL----VAIFG------ 161
Query: 856 GRGSDMQVGTYVEKLFLSELSGNVIDLCPVGALTSKPYSFTARPWETRKTESVDVLDAVG 915
G+G+ Y E EL DL ++T D++
Sbjct: 162 GQGN---TDDYFE-----ELR----DL-----------------YQTYHVLVGDLIK--- 189
Query: 916 SNIIVSTRTGEVLRVLPRLNEDIN---------EEWLADKGRFAYDGLKRQRLLTPFVRN 966
+ E L L R D EWL + TP
Sbjct: 190 -------FSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN------------TP---- 226
Query: 967 CDGQLVATEWEDA-----LIAVAQKLQ----------------------TSEVAGVVGSL 999
D + + LI V Q T G+V ++
Sbjct: 227 -DKDYLLS----IPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV 281
Query: 1000 ADAEAM----------VALKDLLNKLGSE--DLYTEYAFPLE--------GAGTDLRANY 1039
A AE A+ +L +G + Y + P G +
Sbjct: 282 AIAETDSWESFFVSVRKAIT-VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV---PSP 337
Query: 1040 LLNNKIAGAEEADLILLIG-TNPRF------EAPLFNAR------------------IRK 1074
+L+ I+ + + + TN E L N +RK
Sbjct: 338 MLS--ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 1075 GYLTNELDVAYI-----GPKVDLRYD-----Y--EHLGESADLIKQ-LASGSHPFSKKLS 1121
+ LD + I K R+ + L ++DLI + L + F+
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA--K 453
Query: 1122 AAKKPLIVV-----GADI--SDGAAVLALVQQLAAKVTCESDVPCDWKVLNILQKAASQV 1174
+ P V G+D+ G+ +V + P W+ Q A+ +
Sbjct: 454 DIQIP---VYDTFDGSDLRVLSGSISERIVDCIIRL-------PVKWE--TTTQFKATHI 501
Query: 1175 AALDIGYKPGTSAIREKPPKVLFLLGADEGSISRDDVGKDCFIIYQGHHGDHGASIADAI 1234
LD G P G S +G
Sbjct: 502 --LDFG------------P----------GGASG--LGV--------------------- 514
Query: 1235 LPGAAYTEKQSTYVNTEGRAQQTLTAVT 1262
L T+ N +G + + A T
Sbjct: 515 L----------THRNKDGTGVRVIVAGT 532
Score = 59.3 bits (143), Expect = 8e-09
Identities = 97/565 (17%), Positives = 155/565 (27%), Gaps = 182/565 (32%)
Query: 106 TQLDSAELTLHREFQQKEKTIVENAAKQLKQISENEFKQK-----EKTIVENAAKQLKQI 160
T L +F + E A + + E K + + Q Q+
Sbjct: 24 TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQV 83
Query: 161 SEKPGATKLMLDFKAKCEVYEAENKKLK--------AEL-TQRDIKLKETNHLLKEESKK 211
L L E EN L+ A+L + D L +T L+K
Sbjct: 84 ------LNLCLT--------EFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITA 129
Query: 212 RELMAKKVESVMQSQLQQAIHMITSDVTHLHTS-----------KE--SL-ATRQPSEQS 257
R + + + S L +A + L +E L T
Sbjct: 130 RIMAKRPFDKKSNSALFRA---VGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGD 186
Query: 258 LIDSTTDTNCPVTQQYVPSSNQQYA-----------PSS--NQQY------SIPTSNINQ 298
LI + +T + + + + + PS+ ++ Y S P + Q
Sbjct: 187 LIKFSAETLSELIRT-TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ 245
Query: 299 --QYSMF--SADSTHMNIVERDIPNSADDMRKYIEMQYSMFSADSTHM-NIVERDIPNSA 353
Y + T + + H +V
Sbjct: 246 LAHYVVTAKLLGFTPGELRSY-------------------LKGATGHSQGLVTAVAIAET 286
Query: 354 DD-------MRKYIEML----LEKPPGNPVSDLEAE-VKDS-------AGPMTS------ 388
D +RK I +L + P + L ++DS PM S
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ 346
Query: 389 -FLESSVTSDIFNE--PALYTKTVRSVTLKISKEKI------ESLERNLQTETQRSRKLE 439
++ V + N PA K V ++L + + +SL L R K
Sbjct: 347 EQVQDYV--NKTNSHLPA--GKQV-EISLVNGAKNLVVSGPPQSLYG-LNLTL-RKAKAP 399
Query: 440 EELQDTRQTCEEVVRKEVSIVTVTLFLERLRSS---HSKRSKNADSLVRLQKAQDEIQTL 496
L +R E RK + F L + HS L L A D I
Sbjct: 400 SGLDQSRIPFSE--RK---LKFSNRF---LPVASPFHS-------HL--LVPASDLINKD 442
Query: 497 LAKSASIKTELREFYQTQLNNNVKEKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQL 556
L K+ F + V + T D ++L + +I E
Sbjct: 443 LVKNNV------SFNAKDIQIPV------YDTF-DGSDL------RVLSGSISERIV--- 480
Query: 557 KQISEKP---------GATKLMLDF 572
I P AT + LDF
Sbjct: 481 DCIIRLPVKWETTTQFKATHI-LDF 504
Score = 57.0 bits (137), Expect = 4e-08
Identities = 98/630 (15%), Positives = 178/630 (28%), Gaps = 238/630 (37%)
Query: 456 EVSI-VTVTLFL--ERLRSSHSKR-SKNADSLVRLQKAQDEIQT---LLAK-SASIKTEL 507
E + V F +L+ +K + + A DE T L+ K + + +
Sbjct: 17 EHVLLVPTASFFIASQLQEQFNKILPEPTEGFA----ADDEPTTPAELVGKFLGYVSSLV 72
Query: 508 REFYQTQLNNNVKEKLKEFQTQ-LDSAELTLH----------REFQQKEKTIVEN---AA 553
Q + + L EF+ L+ ++ H K K +++N A
Sbjct: 73 EPSKVGQFDQVLNLCLTEFENCYLEGNDI--HALAAKLLQENDTTLVKTKELIKNYITAR 130
Query: 554 KQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKA-------------ELTQRDIKLKET 600
K+ +K + L F+A N +L A EL RD L +T
Sbjct: 131 IMAKRPFDKKSNSAL---FRAV----GEGNAQLVAIFGGQGNTDDYFEEL--RD--LYQT 179
Query: 601 -NHLLKEESKKRELMAKKVESVMQSQLQQ-AIHMITSDVTHLHVLPCVRVLS-PVKT--- 654
+ L+ + L+ L + + ++ L + L P T
Sbjct: 180 YHVLVGD------LI-----KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228
Query: 655 --LSTSAV-----------NNEKFEVFIDDKKVMVDPG---------TTVLQP-VAACAM 691
L + + + + V K + PG T Q V A A+
Sbjct: 229 DYLLSIPISCPLIGVIQLAH---YVVTA--KLLGFTPGELRSYLKGATGHSQGLVTAVAI 283
Query: 692 PVMKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFT 751
W R+ + L G C + A+ + +
Sbjct: 284 AETDSW-----ESFFVSVRK-AITVLFF----------IGVRC--YE---AYPNTSLPPS 322
Query: 752 DIDFSGKSG----TY----TRVTRQRSWGLI-------P--SRVFLQSIN--RHWI--GP 790
++ S ++ + + +T+++ + P +V + +N ++ + GP
Sbjct: 323 ILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP 382
Query: 791 VAA-----------CAMPVMKGWRVKTNSEMTRRAREGVMEFLLVN---H-PLDCPICDQ 835
+ A + R+ + R + FL V H L P D
Sbjct: 383 PQSLYGLNLTLRKAKAPSGLDQSRIP----FSERKLKFSNRFLPVASPFHSHLLVPASDL 438
Query: 836 GGECDLQDQSMAFGNDLGTTGRGSDMQVGTYVEKLFLSELSGNVIDLCPVGALTSKPYSF 895
+ DL +++F D+Q+ PV Y
Sbjct: 439 INK-DLVKNNVSF--------NAKDIQI--------------------PV-------YD- 461
Query: 896 TARPWETRKTESVDVLDAVGSNIIVSTRTGEVLR-----VLPRLNEDINEE---W-LADK 946
T G LR + R+ + I W +
Sbjct: 462 --------------------------TFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQ 495
Query: 947 GR------FAYDGLKRQRLLTPFVRNCDGQ 970
+ F G +LT RN DG
Sbjct: 496 FKATHILDFGPGGASGLGVLT--HRNKDGT 523
Score = 55.1 bits (132), Expect = 2e-07
Identities = 64/349 (18%), Positives = 112/349 (32%), Gaps = 103/349 (29%)
Query: 994 GVVGSLADAEAMVALKDLLNK---------LGSEDLYTEYA-FPLEGAGTDLRANYLLNN 1043
G V SL + + +LN L D++ A E T ++ L+ N
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN 125
Query: 1044 KIAGAEEADLILLIGTNPRFEAPLFNARIRKG----YL------TNELDVAYIGPKVDLR 1093
I A ++ + + + LF A + +G + Y +LR
Sbjct: 126 YI----TARIMAKRPFDKKSNSALFRA-VGEGNAQLVAIFGGQGNTD---DYFE---ELR 174
Query: 1094 --YD-YEHLGESADLIKQLASGSHPFSKKLSAAKKPLIVVGADIS---DGAAVLALVQQL 1147
Y Y L DLIK A + A+K + G +I + + L
Sbjct: 175 DLYQTYHVLVG--DLIKFSAETLSELIRTTLDAEK-VFTQGLNILEWLENPSNTPDKDYL 231
Query: 1148 AAKVTCESDVPCDWKVLNILQKAASQVAALDIGYKPGTSAIREKPPKVLFLLGADEGSIS 1207
+ +P ++ ++Q A V A +G+ PG L +G+
Sbjct: 232 LS-------IPISCPLIGVIQLAHYVVTAKLLGFTPGE------------LRSYLKGATG 272
Query: 1208 RDDVGKDCFIIYQGHHGDHGASIADAILPGAAYTEKQSTYVNTE---------G-RAQQT 1257
H + A+ + +S +V+ G R +
Sbjct: 273 ------------------HSQGLVTAVAIAETDSW-ESFFVSVRKAITVLFFIGVRCYEA 313
Query: 1258 --LTAVTPPGLAREDWKIIRALSEGVSS------NLSSEPVD--VKQKN 1296
T++ PP + + + +EGV S NL+ E V V + N
Sbjct: 314 YPNTSL-PPSILEDSLEN----NEGVPSPMLSISNLTQEQVQDYVNKTN 357
Score = 45.8 bits (108), Expect = 1e-04
Identities = 53/366 (14%), Positives = 82/366 (22%), Gaps = 195/366 (53%)
Query: 696 GWR----VKTN-SEMT--------RRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMA 742
G+ V N +T +R RE I + + L+ + +
Sbjct: 1658 GFSILDIVINNPVNLTIHFGGEKGKRIRENYSAM----------IFETIVDGKLKTEKI- 1706
Query: 743 FGSDRSRFTDIDFSGKSG--TYTRVTRQ--------------RSWGLIPSR-VF------ 779
F T F + G + T+ T Q +S GLIP+ F
Sbjct: 1707 FKEINEHSTSYTFRSEKGLLSATQFT-QPALTLMEKAAFEDLKSKGLIPADATFAGHSLG 1765
Query: 780 ----LQSINRHWIGPVAACAMPVMKGWRVKTNSEMTRRAREGVMEF----LLVNHPLDCP 831
L A+ A VM +V +
Sbjct: 1766 EYAAL-----------ASLA---------------------DVMSIESLVEVVFY----- 1788
Query: 832 ICDQGGECDLQDQSMAFGNDLGTTGRGSDMQVGTYVEKLFLSELSGNVIDLCPVGALTSK 891
RG MQ P L
Sbjct: 1789 -------------------------RGMTMQ------------------VAVPRDELGRS 1805
Query: 892 PYSFTA-RPWETRKTESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFA 950
Y A P + S + L V + RTG ++ + +N
Sbjct: 1806 NYGMIAINPGRVAASFSQEALQYVVERV--GKRTGWLVEI-------VN----------- 1845
Query: 951 YDGLKRQRLLTPFVRNCDGQLVATEWEDALIAVAQKLQTSEVAGVVGSLADAEAMVALKD 1010
Y N + Q AG D A+ + +
Sbjct: 1846 Y--------------NVENQQYV------------------AAG------DLRALDTVTN 1867
Query: 1011 LLNKLG 1016
+LN +
Sbjct: 1868 VLNFIK 1873
Score = 38.5 bits (89), Expect = 0.022
Identities = 44/242 (18%), Positives = 68/242 (28%), Gaps = 99/242 (40%)
Query: 893 Y--SFTARP-WE-----TRKTESVDVLDAVGSN-----IIVSTRTGEVLR---------- 929
Y S A+ W + T +LD V +N I G+ +R
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFET 1695
Query: 930 ------VLPRLNEDINEE-----WLADKGRFAYDGLKRQRLLTPFVRNCDGQ--LVATE- 975
++ ++INE + ++KG L T F Q L E
Sbjct: 1696 IVDGKLKTEKIFKEINEHSTSYTFRSEKGL-----LS----ATQFT-----QPALTLMEK 1741
Query: 976 --WED----------------------ALIAVAQKLQTSEVAGVV---GSLADAE----- 1003
+ED AL ++A + + VV G
Sbjct: 1742 AAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDE 1801
Query: 1004 ------AMVALKD--LLNKLGSEDLYTEYAFPLEGAGTDLR---ANYLLNNK---IAGAE 1049
M+A+ + E L +Y G T NY + N+ AG
Sbjct: 1802 LGRSNYGMIAINPGRVAASFSQEAL--QYVVERVGKRTGWLVEIVNYNVENQQYVAAGDL 1859
Query: 1050 EA 1051
A
Sbjct: 1860 RA 1861
Score = 35.8 bits (82), Expect = 0.13
Identities = 37/199 (18%), Positives = 60/199 (30%), Gaps = 56/199 (28%)
Query: 1177 LDIGYKPGTSAIREKPPKVLFLLGADEGSISRDDVGKDCFIIYQGHHGDHGASIADAILP 1236
LDI + P + G ++G R++ F G + I
Sbjct: 1662 LDI--------VINNPVNLTIHFGGEKGKRIRENYSAMIF-----ETIVDGKLKTEKIFK 1708
Query: 1237 GAAYTEKQSTYVNTEGRAQQTLTAVTPPGL------AREDWK---IIRA--------LSE 1279
E ++Y + + T T P L A ED K +I A L E
Sbjct: 1709 EI--NEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGE 1766
Query: 1280 --------GVSS------------NLSSEPVDVKQKNLEDYYMT--DPISRASGTMAKCI 1317
V S V + +Y M +P A+ + +
Sbjct: 1767 YAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEAL 1826
Query: 1318 QAVHKQ--KQSKYYEEAVN 1334
Q V ++ K++ + E VN
Sbjct: 1827 QYVVERVGKRTGWLVEIVN 1845
>1g8k_A Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske,
oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis}
SCOP: b.52.2.2 c.81.1.1 PDB: 1g8j_A*
Length = 825
Score = 64.3 bits (157), Expect = 2e-10
Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 2/75 (2%)
Query: 1228 ASIADAILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPGLAREDWKIIRALSE--GVSSNL 1285
A A +LP A E T +N E R + + + PPG A D I ++
Sbjct: 521 AEAAHLMLPAAHPGEMNLTSMNGERRIRLSEKFMDPPGTAMADCLIAARIANALRDMYQK 580
Query: 1286 SSEPVDVKQKNLEDY 1300
+ Q D+
Sbjct: 581 DGKAEMAAQFEGFDW 595
Score = 55.9 bits (135), Expect = 8e-08
Identities = 32/217 (14%), Positives = 58/217 (26%), Gaps = 49/217 (22%)
Query: 879 VIDLCPVGALTSKPYSFTARPWETRKTESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDI 938
G + + + +V + A+ + + + V+P +
Sbjct: 34 KWPELEEGGRAPEQNALGLDFRKQLPPLAVTLTPAMTNVVTEHDGARYDIMVVPDKACVV 93
Query: 939 NEEWLADKGRFAYD------GLKRQRLLTPFVRNCDGQLVATEWEDALIAVAQKLQTSEV 992
N + +G G ++RL P + + V T W+ A+ A ++ +
Sbjct: 94 NSGLSSTRGGKMASYMYTPTGDGKERLSAPRLYA-ADEWVDTTWDHAMALYAGLIK--KT 150
Query: 993 AGVVGSLADAEAMVALKDLLNKLGSEDLYT--------------EY-------------- 1024
G G E+ +
Sbjct: 151 LDKDG--PQGVFFSCFDHGGAGGGFENTWGTGKLMFSAIQTPMVRIHNRPAYNSECHATR 208
Query: 1025 AFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNP 1061
G G LNN A+ AD+I IG NP
Sbjct: 209 EM---GIGE-------LNNAYEDAQLADVIWSIGNNP 235
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family,
iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter
acetylenicus}
Length = 727
Score = 64.2 bits (157), Expect = 2e-10
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 1228 ASIADAILPGAAYTEKQSTYVNTEGRAQQTLT--AVTPPGLAREDWKIIRALSE 1279
A +AD +LPG + E+ N EG + V P G A++++ IR L+
Sbjct: 447 AQLADYVLPGDHWLERPVVQPNWEGIPFGNTSQQVVEPAGEAKDEYYFIRELAV 500
Score = 50.0 bits (120), Expect = 5e-06
Identities = 25/190 (13%), Positives = 52/190 (27%), Gaps = 38/190 (20%)
Query: 914 VGSNIIVSTRTGEVLRVLPRLNED--INEEWLADKGRFAYDGLKR-QRLLTPFVR----N 966
+ + + ++ + K A R+L P
Sbjct: 11 INCVVEAEVKADGKIQTKSISEPHPTTPPNSICMKSVNADTIRTHKDRVLYPLKNVGSKR 70
Query: 967 CDGQLVATEWEDALIAVAQKLQT-------SEVAGVVGSLADAEAMVALKDLLNKLGSED 1019
+ + W+ AL +A+KL+ + + L+ +N LGS +
Sbjct: 71 GEQRWERISWDQALDEIAEKLKKIIAKYGPESLGVSQTEINQQSEYGTLRRFMNLLGSPN 130
Query: 1020 LY---------TEYAFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPR-----FEA 1065
T G+ A +++ +L IG N +
Sbjct: 131 WTSAMYMCIGNTAGVH-RVTHGS---------YSFASFADSNCLLFIGKNLSNHNWVSQF 180
Query: 1066 PLFNARIRKG 1075
A +++G
Sbjct: 181 NDLKAALKRG 190
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine
dinucleotide, iron-sulfur, metal-binding, molybdopterin;
HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A*
2vpw_A* 2vpy_A*
Length = 765
Score = 61.5 bits (150), Expect = 1e-09
Identities = 34/221 (15%), Positives = 57/221 (25%), Gaps = 41/221 (18%)
Query: 882 LCPVGALTSKPYSFTARPWETRKTESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDINEE 941
+ G+ +K E + + I+ V +V +
Sbjct: 17 MALRGSGPAKALKAPWYAQEVKSVYQICEGCFWRCGIVAHAVGNRVYKVEGYEANPKSRG 76
Query: 942 WLADKGRFAYDGLKR-QRLLTPFVRNC-----DGQLVATEWEDALIAVAQKLQT------ 989
L +G+ A RL P +R +G+ WE+AL +A+K+
Sbjct: 77 RLCPRGQGAPQTTYDPDRLKRPLIRVEGSQRGEGKYRVATWEEALDHIAKKMLEIREKYG 136
Query: 990 -SEVAGVVGSLADAEAMVALKDLLNKLGSE---DLY-------TEYAFPL---EGAGTDL 1035
+A + L GS E A G
Sbjct: 137 PEAIAFFGHGT---GDYWFVDFLPAAWGSPNAAKPSVSLCTAPREVASQWVFGRPIGG-- 191
Query: 1036 RANYLLNNKIAGAEEADLILLIGTNPRFEA--PLFNARIRK 1074
++ E A I+LIG + E
Sbjct: 192 -------HEPIDWENARYIVLIGHHI-GEDTHNTQLQDFAL 224
Score = 56.5 bits (137), Expect = 5e-08
Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 1228 ASIADAILPGAAYTEKQSTYVNTEGRA---QQTLTAVTPPGLAREDWKIIRALSE 1279
AD ILP A Y E+ +V + Q A P + W I R L
Sbjct: 473 VMWADVILPEATYLERYDDFVLVAHKTPFIQLRTPAHEPLFDTKPGWWIARELGL 527
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 59.4 bits (144), Expect = 7e-09
Identities = 41/239 (17%), Positives = 91/239 (38%), Gaps = 10/239 (4%)
Query: 1 QKAQDEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQ 60
+ Q + + +++ LR + N Q E ++++ + R Y
Sbjct: 829 YVVRKRYQCMRDATIALQALLRGY--LVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRT 886
Query: 61 LNNNQKAQDEIQTLLAKSASIKTEL---REFYQTQLNNNVKEKLKEFQTQLDSAELTLHR 117
L Q + ++AK K ++ +L+ ++ K+ + Q ++D
Sbjct: 887 LKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKS 946
Query: 118 EFQQKEKTIVENAAKQLKQISENEFKQKEKTIVENAAKQLKQISEKPGATKLML-DFKAK 176
++ + + + K S+ E + + +NA ++ + E+ + L + +
Sbjct: 947 LLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTE 1006
Query: 177 CEVYEAENKKLKAELTQRDIKLKETNHLLKEES----KKRELMAKKVESVMQSQLQQAI 231
+ E K K E Q +LKE N LLK E ++ AK++ M+ +L +
Sbjct: 1007 KKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEET 1065
Score = 50.5 bits (121), Expect = 4e-06
Identities = 34/239 (14%), Positives = 82/239 (34%), Gaps = 33/239 (13%)
Query: 414 LKISKEKIESLERNLQTETQRSRKLEEE----------LQDTRQTCEEVVRKEVSI---- 459
++ + +++L R + L E R ++ V +
Sbjct: 838 MRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCY 897
Query: 460 --VTVTLFLERLRSSHSKRSKNADSLVRLQKAQDEIQTLLAKSASIKTELREFYQTQLNN 517
+ L++L+ + + L+ ++Q + + L E L
Sbjct: 898 RRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLE-KMNNLEI 956
Query: 518 NVKEKLKEFQTQLDSAELTL--HREFQQKEKTIVENAAKQLKQISEKPGATKLMLDFKAK 575
+ ++ ++ ++ ++ + + ++ E AK K++ + + +
Sbjct: 957 TYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQT----------QTE 1006
Query: 576 CEVYEAENKKLKAELTQRDIKLKETNHLLKEES----KKRELMAKKVESVMQSQLQQAI 630
+ E K K E Q +LKE N LLK E ++ AK++ M+ +L +
Sbjct: 1007 KKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEET 1065
Score = 44.3 bits (105), Expect = 3e-04
Identities = 22/182 (12%), Positives = 68/182 (37%), Gaps = 16/182 (8%)
Query: 414 LKISKEKIESLERNLQTETQRSRKLEEELQDTRQTCEEVVRKEVSIVTVTLFLERLRSSH 473
LKI +E ++ + +L+ ++ + + + ++ K + L ++
Sbjct: 909 LKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEK----------MNNLEITY 958
Query: 474 SKR-SKNADSLVRLQKAQDEIQTLLAKSASIKTELREFYQ-----TQLNNNVKEKLKEFQ 527
S K + RL+ +++E + + S++ E+ + + ++E +++
Sbjct: 959 STETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018
Query: 528 TQLDSAELTLHREFQQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLK 587
+ + L + + E + Q E + L + K + +++L+
Sbjct: 1019 HETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLR 1078
Query: 588 AE 589
+
Sbjct: 1079 YQ 1080
Score = 39.7 bits (93), Expect = 0.007
Identities = 23/152 (15%), Positives = 63/152 (41%), Gaps = 15/152 (9%)
Query: 1 QKAQDEIQTLLAKSASIKTELREF---YQTQLNNNQKAQDEIQTLLAKSASIKTELREFY 57
+ E ++LL K +++ ++ + + +++E + + S++ E+ +
Sbjct: 938 DEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAK-- 995
Query: 58 QTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQLDSAELTLHR 117
+ Q E +T+ + K E QL + +KE+ +T+ + +H
Sbjct: 996 --LRKELHQTQTEKKTIEEWADKYKHETE-----QLVSELKEQNTLLKTEKEELNRRIHD 1048
Query: 118 EFQQKEKTI---VENAAKQLKQISENEFKQKE 146
+ ++ +T+ + KQL+ +E + +
Sbjct: 1049 QAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 56.4 bits (136), Expect = 6e-08
Identities = 32/227 (14%), Positives = 85/227 (37%), Gaps = 19/227 (8%)
Query: 407 KTVRSVTLKISKEKIESLERNLQTETQRSRKLEEELQDTRQTCEEVVRKEVSIVTVTLFL 466
K L + +IE E Q +K+++++ D + EE L
Sbjct: 922 KQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQK-------L 974
Query: 467 ERLRSSHSKRSKNADSLVRLQKAQDEIQTLLAKSASIKTELREF-----YQTQLNNNVKE 521
+ + + + K + + +D+ L + ++ + + + + N+ +
Sbjct: 975 QLEKVTADGKIKKMED--DILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTK 1032
Query: 522 KLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEA 581
+ ++ + E+ L +E +K + +E ++L+ E + + + +A+ +A
Sbjct: 1033 LKNKHESMISELEVRLKKE--EKSRQELEKIKRKLE--GESSDLHEQIAELQAQIAELKA 1088
Query: 582 ENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQ 628
+ K + EL +L++ KK + + +Q L+
Sbjct: 1089 QLAKKEEELQAALARLEDETSQKNNALKKIRELESHISD-LQEDLES 1134
Score = 50.6 bits (121), Expect = 4e-06
Identities = 50/275 (18%), Positives = 108/275 (39%), Gaps = 23/275 (8%)
Query: 1 QKAQDEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQ 60
QKA+ E++ L K + E + Q +L + E + + + A+ K EL E
Sbjct: 874 QKAEAELKELEQKHTQLCEE-KNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEM 932
Query: 61 LNNNQKAQDEIQTLLAKSASIKTELREFYQTQLN--NNVKEKLKEFQTQLDSAELTLHRE 118
++ ++ Q L A+ ++ ++ + + QL ++KL+ + D + +
Sbjct: 933 EARIEEEEERSQQLQAEKKKMQQQMLD-LEEQLEEEEAARQKLQLEKVTADGKIKKMEDD 991
Query: 119 FQQKEKTI------VENAAKQLKQISEN--EFKQKEKTIVENAAKQLKQISEKPGATKLM 170
E + +++ ++ N E ++K K + + K ISE +
Sbjct: 992 ILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISE---LEVRL 1048
Query: 171 LDFKAKCEVYEAENKKLKAE---LTQRDIKLKETNHLLKEESKKRE----LMAKKVESVM 223
+ + E +KL+ E L ++ +L+ LK + K+E ++E
Sbjct: 1049 KKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLED-E 1107
Query: 224 QSQLQQAIHMITSDVTHLHTSKESLATRQPSEQSL 258
SQ A+ I +H+ +E L + + +
Sbjct: 1108 TSQKNNALKKIRELESHISDLQEDLESEKAARNKA 1142
Score = 43.3 bits (102), Expect = 7e-04
Identities = 28/199 (14%), Positives = 71/199 (35%), Gaps = 34/199 (17%)
Query: 433 QRSRKLEEELQDTRQTCEEVVRKEVSIVTVTLFLERLRSSHSKRSKNADSLVRLQKAQDE 492
+ + EEE+Q + + ER + + ++ + +L + ++
Sbjct: 850 LKVTRQEEEMQAKDEELQRTK-------------ERQQKAEAELKELEQKHTQLCEEKNL 896
Query: 493 IQTLLAKSASIKTELREFYQTQLN--NNVKEKLKEFQTQLDSAELTLHREFQQKEKTIVE 550
+Q L + E E ++E L E + +++ E + ++
Sbjct: 897 LQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEE---------ERSQQLQ 947
Query: 551 NAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKK 610
K+++Q D + + E EA +KL+ E D K+K+ + +
Sbjct: 948 AEKKKMQQQML---------DLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQ 998
Query: 611 RELMAKKVESVMQSQLQQA 629
+ K+ + ++ ++
Sbjct: 999 NNKLTKERKL-LEERVSDL 1016
Score = 41.4 bits (97), Expect = 0.002
Identities = 32/209 (15%), Positives = 83/209 (39%), Gaps = 20/209 (9%)
Query: 58 QTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQLN--NNVKEKLKEFQTQLDSAELTL 115
+ ++ + + K+ + EL + + N ++EKL+ AE
Sbjct: 856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMR 915
Query: 116 HREFQQKEKTIVENAAKQLKQISENEFKQKEKTIVENAAKQLKQISEKPGATKLMLDFKA 175
R +K++ +E +++ E E ++ ++ ++ K+++Q D +
Sbjct: 916 VRLAAKKQE--LEEILHEMEARIEEEEERSQQ--LQAEKKKMQQQML---------DLEE 962
Query: 176 KCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQAIHMIT 235
+ E EA +KL+ E D K+K+ + + + K+ + L++ + +T
Sbjct: 963 QLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKL-----LEERVSDLT 1017
Query: 236 SDVTHLHTSKESLATRQPSEQSLIDSTTD 264
+++ ++L + +S+I
Sbjct: 1018 TNLAEEEEKAKNLTKLKNKHESMISELEV 1046
Score = 40.6 bits (95), Expect = 0.004
Identities = 28/197 (14%), Positives = 71/197 (36%), Gaps = 8/197 (4%)
Query: 1 QKAQDEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQ 60
+D+ L + ++ + + T L ++ + L K S+ +EL + +
Sbjct: 993 LIMEDQNNKLTKERKLLEERVSDL-TTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKE 1051
Query: 61 LNNNQKAQDEIQTLLAKSASIKTELREFYQT--QLNNNVKEKLKEFQTQLDSAE-LTLHR 117
+ Q+ + + L +S+ + ++ E +L + +K +E Q L E T +
Sbjct: 1052 EKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQK 1111
Query: 118 EFQQKEKTIVENAAKQLKQISENEFKQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKC 177
K+ +E+ L++ + E ++ + E + L + E + D
Sbjct: 1112 NNALKKIRELESHISDLQE--DLESEKAARNKAEKQKRDLSEELEA--LKTELEDTLDTT 1167
Query: 178 EVYEAENKKLKAELTQR 194
+ + +
Sbjct: 1168 ATQQELRGSDYKDDDDK 1184
Score = 34.8 bits (80), Expect = 0.24
Identities = 50/359 (13%), Positives = 126/359 (35%), Gaps = 64/359 (17%)
Query: 98 KEKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQISENEFKQKEKTIVENAAKQL 157
E+L+ + + AE L Q+ + E Q K +E E + + + A +
Sbjct: 863 DEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKK 922
Query: 158 KQISEKPGATKLMLDFKAKCEVYEAENKKLKAE---LTQRDIKLKETNHLLKEESKKREL 214
+++ E + + +A+ E E +++L+AE + Q+ + L+E + +K +L
Sbjct: 923 QELEEI------LHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQL 976
Query: 215 MAKKVESVMQSQLQQAIHMITSDVTHLHTSKESLATRQPSEQSLIDSTTDTNCPVTQQYV 274
+ ++ ++ I ++ L ++ L R + + +
Sbjct: 977 EKVTADGKIKK-MEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKA-------- 1027
Query: 275 PSSNQQYAPSSNQQYSIPTSNINQQYSMFSADSTHMNIVERDIPNSADDMRKYIEMQYSM 334
N+ + + + + + + + S ++ K
Sbjct: 1028 -------------------KNLTKLKNKHESMISELEVRLKKEEKSRQELEK----IKRK 1064
Query: 335 FSADSTHMNIVERDIPNSADDMRKYIEMLLEKPPGNPVSDLEAEVKDSAGPMTSFLESSV 394
+S D+ +++ I L + ++ E E++ + +
Sbjct: 1065 LEGES-------SDLHEQIAELQAQIAELKAQ-----LAKKEEELQA--------ALARL 1104
Query: 395 TSDIFNEPALYTKTVRSVTLKIS--KEKIESLERNLQTETQRSRKLEEELQDTRQTCEE 451
+ ++ K +R + IS +E +ES + ++ R L EEL+ + E+
Sbjct: 1105 EDET-SQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELED 1162
>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate
dehydrogenase, selenocysteine, molybdopterin, MGD,
iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A
{Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1
Length = 977
Score = 55.7 bits (134), Expect = 1e-07
Identities = 51/248 (20%), Positives = 86/248 (34%), Gaps = 43/248 (17%)
Query: 898 RPWETRKTESVDVLDAVGSNII--VSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGLK 955
+ + ++T SV +VG +I +T + V + INE L KG + +
Sbjct: 6 KTVDAKQTTSVCCYCSVGCGLIVHTDKKTNRAINVEGDPDHPINEGSLCAKGASTWQLAE 65
Query: 956 -RQRLLTPFVR-NCDGQLVATEWEDALIAVAQKLQTSEVAGVVGSLADAEAMVALKDLLN 1013
+R P R Q W+ L +A+++ + A V A + V D +
Sbjct: 66 NERRPANPLYRAPGSDQWEEKSWDWMLDTIAERVAKTREATFVTKNAKGQV-VNRCDGIA 124
Query: 1014 KLGSEDLYTEYAFPLEGAGTDLRANYLLN-----------------------NKIAGAEE 1050
+GS + E + + L Y+ + N +
Sbjct: 125 SVGSAAMDNEECWIYQAWLRSLGLFYIEHQARIXHSATVAALAESYGRGAMTNHWIDLKN 184
Query: 1051 ADLILLIGTNPRFEA-PLFNARIRKGYLTNELDVAYIGPK---VDLRYDYEHLGESADLI 1106
+D+IL++G+NP E P+ + + G VD RY DL
Sbjct: 185 SDVILMMGSNP-AENHPISFKWVMRAKDK--------GATLIHVDPRYT--RTSTKCDLY 233
Query: 1107 KQLASGSH 1114
L SGS
Sbjct: 234 APLRSGSD 241
Score = 53.0 bits (127), Expect = 6e-07
Identities = 15/59 (25%), Positives = 22/59 (37%)
Query: 1231 ADAILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPGLAREDWKIIRALSEGVSSNLSSEP 1289
LP A EK+ + N+ Q P A D +I L++ V L+ P
Sbjct: 566 EVFFLPCAVAIEKEGSISNSGRWMQWRYVGPEPRKNAIPDGDLIVELAKRVQKLLAKTP 624
>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S;
oxidoreductase, selenium, selenocysteine, seCys,
molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli}
SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*
Length = 1015
Score = 55.3 bits (133), Expect = 1e-07
Identities = 39/277 (14%), Positives = 82/277 (29%), Gaps = 46/277 (16%)
Query: 875 LSGNVIDLCPVGALTSKPYSFTA-----RPWETRKTESVDVLDAVGSNIIVSTRTGEVLR 929
+ + V AL P A + ++ + +VG +++ +
Sbjct: 11 ICAGGMAGTTVAALGFAPKQALAQARNYKLLRAKEIRNTCTYCSVGCGLLMYSLGDGAKN 70
Query: 930 VLPRL-----NED--INEEWLADKGRFAYDGLKR-QRLLTPFVR-NCDGQLVATEWEDAL 980
+ + D ++ L KG D + RL P R + WE+A
Sbjct: 71 AREAIYHIEGDPDHPVSRGALCPKGAGLLDYVNSENRLRYPEYRAPGSDKWQRISWEEAF 130
Query: 981 IAVAQKLQTSEVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYL 1040
+A+ ++ A + V L + E + L +
Sbjct: 131 SRIAKLMKADRDANFIEKNEQGV-TVNRWLSTGMLCASGASNETGMLTQKFARSLGMLAV 189
Query: 1041 LN-----------------------NKIAGAEEADLILLIGTNPRFEA-PLFNARIRKGY 1076
N N + A++++++G N EA P+ +
Sbjct: 190 DNQARVXHGPTVASLAPTFGRGAMTNHWVDIKNANVVMVMGGNA-AEAHPVGFRWAMEAK 248
Query: 1077 LTNELDVAYIGPKVDLRYDYEHLGESADLIKQLASGS 1113
N+ + + P+ + AD+ + SG+
Sbjct: 249 NNNDATLIVVDPR------FTRTASVADIYAPIRSGT 279
Score = 54.5 bits (131), Expect = 3e-07
Identities = 11/49 (22%), Positives = 18/49 (36%)
Query: 1231 ADAILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPGLAREDWKIIRALSE 1279
LP + E+ + N+ Q PG AR D +I+ +
Sbjct: 610 EVFRLPSTCFAEEDGSIANSGRWLQWHWKGQDAPGEARNDGEILAGIYH 658
>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding
enzyme, MGD-cofactors, DMSO-reductase family,
4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter
acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A*
1ti4_A* 1vld_M* 1vle_M* 1vlf_M*
Length = 875
Score = 45.4 bits (107), Expect = 1e-04
Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 14/78 (17%)
Query: 1216 FIIYQGHHGDHGASIADAILPGAAYTEK--------------QSTYVNTEGRAQQTLTAV 1261
F++ Q + AD ILP E+ + + +
Sbjct: 521 FVVSQSIWFEGEVPFADIILPACTNFERWDISEFANCSGYIPDNYQLCNHRVISLQAKCI 580
Query: 1262 TPPGLAREDWKIIRALSE 1279
P G + D++I R ++
Sbjct: 581 EPVGESMSDYEIYRLFAK 598
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 41.7 bits (97), Expect = 6e-04
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 98 KEKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQISENEFKQKEKTIVEN--AAK 155
+E+ ++ +LD+A + E+ E A K L++ ++ + +Q EK + N A K
Sbjct: 91 REEQRKRLQELDAAS-------KVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK 143
Query: 156 QLKQ 159
Q
Sbjct: 144 AFYQ 147
Score = 36.3 bits (83), Expect = 0.031
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 12/83 (14%)
Query: 116 HREFQQKEKTIVENAAKQLKQISEN--EFKQKEKTIVENAAKQLKQISEKPGATKLMLDF 173
Q+ ++I + +Q K++ E K E+ E A K L++ +++
Sbjct: 77 ADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQR---------Q 127
Query: 174 KAKCEVYEAENKKL-KAELTQRD 195
+ E + N+ KA Q D
Sbjct: 128 SEQVEKNKINNRIADKAFYQQPD 150
Score = 34.4 bits (78), Expect = 0.15
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 13/73 (17%)
Query: 467 ERLRSSHSK-RSKNADSLVRLQKAQDEIQTLLAKSASIKTELREFYQTQLNNNVKEKL-- 523
E +R K R + L L A ++ + A K +L E+ Q Q K K+
Sbjct: 85 ESIR----KWREEQRKRLQELDAASKVMEQEWREKA--KKDLEEWNQRQSEQVEKNKINN 138
Query: 524 ----KEFQTQLDS 532
K F Q D+
Sbjct: 139 RIADKAFYQQPDA 151
Score = 32.4 bits (73), Expect = 0.58
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 29/95 (30%)
Query: 16 SIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLL 75
SI+ + RE + +L A ++ + A K +L E+ Q Q + Q
Sbjct: 86 SIR-KWREEQRKRLQELDAASKVMEQEWREKA--KKDLEEWNQRQ--SEQVE-------- 132
Query: 76 AKSASIKTELREFYQTQLNNNVKEKLKEFQTQLDS 110
+ ++NN + + K F Q D+
Sbjct: 133 --------------KNKINNRIAD--KAFYQQPDA 151
Score = 32.1 bits (72), Expect = 0.82
Identities = 16/92 (17%), Positives = 38/92 (41%), Gaps = 19/92 (20%)
Query: 137 ISENEFKQKEK-TIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRD 195
I++ + +E +I + +Q K++ E +A +K ++ E ++
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQEL-----------------DAASKVMEQEWREKA 116
Query: 196 IK-LKETNHLLKEESKKRELMAKKVESVMQSQ 226
K L+E N E+ +K ++ + + Q
Sbjct: 117 KKDLEEWNQRQSEQVEKNKINNRIADKAFYQQ 148
Score = 31.3 bits (70), Expect = 1.6
Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 17/76 (22%)
Query: 520 KEKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVY 579
+E+ ++ +LD+A + E+ E A K L++ +++ + E
Sbjct: 91 REEQRKRLQELDAAS-------KVMEQEWREKAKKDLEEWNQR---------QSEQVEKN 134
Query: 580 EAENKKL-KAELTQRD 594
+ N+ KA Q D
Sbjct: 135 KINNRIADKAFYQQPD 150
Score = 30.1 bits (67), Expect = 3.5
Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 551 NAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIK-LKETNHLLKEESK 609
A +L Q E K + + + + +A +K ++ E ++ K L+E N E+ +
Sbjct: 75 AQADRLTQEPES--IRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE 132
Query: 610 KRELMAKKVESVMQSQ 625
K ++ + + Q
Sbjct: 133 KNKINNRIADKAFYQQ 148
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 41.9 bits (97), Expect = 0.002
Identities = 22/193 (11%), Positives = 68/193 (35%), Gaps = 2/193 (1%)
Query: 2 KAQDEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQL 61
Q++ + S ++ + + + K +K + E + +
Sbjct: 396 CKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGI 455
Query: 62 NNNQKAQDEIQTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQLDSAELTLHREFQQ 121
+ Q +++ + + +I + + + V+ E + R+ +Q
Sbjct: 456 QAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQ 515
Query: 122 KEKTIVENAAKQLKQISENEFKQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYE 181
+ + + LKQ++E + + + E ++ E+ L F+ + + +
Sbjct: 516 MMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQ--EQLLKEGFQKESRIMK 573
Query: 182 AENKKLKAELTQR 194
E + L+ ++ +R
Sbjct: 574 NEIQDLQTKMRRR 586
Score = 39.2 bits (90), Expect = 0.011
Identities = 32/211 (15%), Positives = 75/211 (35%), Gaps = 16/211 (7%)
Query: 22 REFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASI 81
++ N + + D LL + + + K +
Sbjct: 390 KKRDDFCKQNQEASSDRCSGLLQV------IFSPLEEEVKAGIYSKPGGYRLFVQKLQDL 443
Query: 82 KTELREFYQTQLNNNVKEKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQISENE 141
K + E + + +E L+ + +S + + Q + E +++K S +
Sbjct: 444 KKKYYE--EPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESA-Q 500
Query: 142 FKQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAEL-TQRDIKLKE 200
K ++ +Q+ + E+ K E E + +L E +KL+E
Sbjct: 501 ASAKMLHEMQRKNEQMMEQKER----SYQEHLKQLTEKMENDRVQLLKEQERTLALKLQE 556
Query: 201 TNHLLKEE-SKKRELMAKKVESVMQSQLQQA 230
LLKE K+ +M +++ +Q+++++
Sbjct: 557 QEQLLKEGFQKESRIMKNEIQD-LQTKMRRR 586
Score = 33.8 bits (76), Expect = 0.40
Identities = 28/217 (12%), Positives = 78/217 (35%), Gaps = 19/217 (8%)
Query: 415 KISKEKIESLERNLQTETQRSRKLEEELQDTRQTCEEVVRKEVSIVTVTLFLERLRSSHS 474
++ K++ + ++N + + R L + + + + +
Sbjct: 387 QLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKK 446
Query: 475 KRSKNADSLVRLQKAQDEIQTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQLDSAE 534
+ + + Q +++ + + +I + + + V+ E
Sbjct: 447 YYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKML 506
Query: 535 LTLHREFQQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAEL-TQR 593
+ R+ +Q + + + LKQ++EK E + +L E
Sbjct: 507 HEMQRKNEQMMEQKERSYQEHLKQLTEK----------------MENDRVQLLKEQERTL 550
Query: 594 DIKLKETNHLLKEE-SKKRELMAKKVESVMQSQLQQA 629
+KL+E LLKE K+ +M +++ +Q+++++
Sbjct: 551 ALKLQEQEQLLKEGFQKESRIMKNEIQD-LQTKMRRR 586
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin
capping, actin-binding, alternative splicing,
calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Length = 323
Score = 41.1 bits (96), Expect = 0.002
Identities = 37/227 (16%), Positives = 78/227 (34%), Gaps = 25/227 (11%)
Query: 5 DEIQTLLAKSASIKTELREFYQTQLNN-NQKAQDEIQTLLAKSASIKTELREFYQTQLNN 63
+ + L + + Q +++ N A + I + + +A+I +
Sbjct: 39 EHVTMLQERFREFARDTGNIGQERVDTVNHLADELINSGHSDAATIAEWKDGL-NEAWAD 97
Query: 64 NQKAQDEIQTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQLDSAELTLHREFQQKE 123
+ D +LA S EL +FY KE ++ L E + +
Sbjct: 98 LLELIDTRTQILAASY----ELHKFYH---------DAKEIFGRIQDKHKKLPEELGRDQ 144
Query: 124 KTIVENAAKQLKQISENEFKQKEKTI--VENAAKQLKQISEKPGATKLMLDFKAKCEVYE 181
T VE + E++ + + ++ A +L+ A + + +
Sbjct: 145 NT-VETLQRMHTTF-EHDIQALGTQVRQLQEDAARLQAAYAGDKADDI----QKRENEVL 198
Query: 182 AENKKLKAELTQRDIKLKETNHLLKEESKKRELMA--KKVESVMQSQ 226
K L R ++L +T + S R+LM + V +++Q
Sbjct: 199 EAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQIEAQ 245
Score = 32.2 bits (73), Expect = 1.1
Identities = 22/163 (13%), Positives = 53/163 (32%), Gaps = 17/163 (10%)
Query: 467 ERLRSSHSKRSKNADSLVRLQKAQDEIQTLLAKSASIKTELREFYQTQLNN--NVKEKLK 524
L R++ + L K + + + + +L E N ++
Sbjct: 96 ADLLELIDTRTQILAASYELHKFYHDAKEIFGRIQDKHKKLPEELGRDQNTVETLQRMHT 155
Query: 525 EFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENK 584
F+ + + + + ++ A +L+ A + + + K
Sbjct: 156 TFEHDIQALGTQVRQ---------LQEDAARLQAAYAGDKADDI----QKRENEVLEAWK 202
Query: 585 KLKAELTQRDIKLKETNHLLKEESKKRELMA--KKVESVMQSQ 625
L R ++L +T + S R+LM + V +++Q
Sbjct: 203 SLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQIEAQ 245
>1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase,
oxotransferase, molybdoenzyme, MO-cofactor, molybdenum;
HET: 2MD; 2.50A {Shewanella massilia} SCOP: b.52.2.2
c.81.1.1
Length = 829
Score = 41.3 bits (97), Expect = 0.002
Identities = 9/67 (13%), Positives = 19/67 (28%), Gaps = 3/67 (4%)
Query: 1216 FIIYQGHHGDHGASIADAILPGAAYTEKQSTYVN---TEGRAQQTLTAVTPPGLAREDWK 1272
++ + +D +LP E+ V V P + D++
Sbjct: 494 CVVTVDVNWTATCRFSDIVLPACTTYERNDIDVYGAYANRGILAMQKMVEPLFDSLSDFE 553
Query: 1273 IIRALSE 1279
I +
Sbjct: 554 IFTRFAA 560
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 38.2 bits (88), Expect = 0.012
Identities = 27/189 (14%), Positives = 66/189 (34%), Gaps = 16/189 (8%)
Query: 29 LNNNQKAQDEIQTLLAKSASIKTELREF---YQTQLNNNQKAQDEIQTLLAKSASIKTEL 85
N + K EI L + S++ +RE LN+ + I L + ++K ++
Sbjct: 3 SNTHLKQLIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQV 62
Query: 86 REFYQTQLNNNVKEKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQISENEFKQK 145
+ Q + K+ Q ++ + RE + I++ Q
Sbjct: 63 SK--NEQTLQDTNAKIASIQKKMSE--IKSERELRSLNIEE---------DIAKERSNQA 109
Query: 146 EKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLL 205
+ I + ++ ++ K ML+ + E+ + + + + + L
Sbjct: 110 NREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDL 169
Query: 206 KEESKKREL 214
E+++ +
Sbjct: 170 VEKTEPKIY 178
Score = 37.8 bits (87), Expect = 0.014
Identities = 17/168 (10%), Positives = 49/168 (29%), Gaps = 7/168 (4%)
Query: 485 RLQKAQDEIQTLLAKSASIKTELREFYQTQLNNN-----VKEKLKEFQTQLDSAELTLHR 539
L KA ++ + +++ E N K+ Q ++ + R
Sbjct: 33 DLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE--IKSER 90
Query: 540 EFQQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKE 599
E + + + E + K E + E +L+ + + ++
Sbjct: 91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVEN 150
Query: 600 TNHLLKEESKKRELMAKKVESVMQSQLQQAIHMITSDVTHLHVLPCVR 647
+KE + + + + ++ I + ++ +
Sbjct: 151 EVKNIKETQQIIFKKKEDLVEKTEPKIYSFYERIRRWAKNTSIVTIKK 198
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 38.8 bits (89), Expect = 0.013
Identities = 34/239 (14%), Positives = 87/239 (36%), Gaps = 27/239 (11%)
Query: 20 ELREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSA 79
+L + L N++ DE LL + + +LR ++ + + + + L A+
Sbjct: 441 QLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERW-QRTPSNELYKPLRAEGT 499
Query: 80 SIKTELREFYQTQLNNNVKEKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQISE 139
+ +T L + Q + VKE + + + L + + I + Q SE
Sbjct: 500 NFRTVLDK--AVQADGQVKECYQSHRDTIV----LLCKPEPELNAAIPSANPAKTMQGSE 553
Query: 140 NEFKQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLK 199
LK + + + K + E E + K + ++T + +
Sbjct: 554 -------------VVNVLKSLLSN------LDEVKKEREGLENDLKSVNFDMTSKFLTAL 594
Query: 200 ETNHLLKEESKKRELMAKKVESVMQSQLQQAIHMITSDVTHLHTSKESLATRQPSEQSL 258
+ ++ EE+ + + + +++Q+++ + ++ S + + + S
Sbjct: 595 AQDGVINEEALSVTELDRVYGGL-TTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEA 652
Score = 33.4 bits (75), Expect = 0.63
Identities = 33/247 (13%), Positives = 86/247 (34%), Gaps = 40/247 (16%)
Query: 414 LKISKEKIESLERNLQTETQRSRKLEEELQDTRQTCEEVVRKEVSIVTVTLFLERLRSSH 473
++ + + +L + + + T V ++ I TV ++ L
Sbjct: 391 MREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELP--- 447
Query: 474 SKRSKNADSLVRLQKAQDEIQTLLAKSASIKTELREFYQT--------QLNNNVKEKLKE 525
+ L R ++ DE LL + + +LR ++ +L ++ +
Sbjct: 448 -------ELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTN 500
Query: 526 FQTQLDSAE---LTLHREFQQKEKTIVE------------------NAAKQLKQISEKPG 564
F+T LD A + +Q TIV + + ++
Sbjct: 501 FRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKS 560
Query: 565 ATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQS 624
+ + K + E E + K + ++T + + + ++ EE+ + + + +
Sbjct: 561 LLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGL-TT 619
Query: 625 QLQQAIH 631
++Q+++
Sbjct: 620 KVQESLK 626
Score = 30.7 bits (68), Expect = 3.9
Identities = 50/371 (13%), Positives = 116/371 (31%), Gaps = 52/371 (14%)
Query: 86 REFYQTQLNNNVKEKLKEFQTQLDSAELTLHREFQQKEK---TIVENAAKQLKQISENEF 142
+ + ++E L S L E + +I+ + ++Q
Sbjct: 380 KADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTV 439
Query: 143 KQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETN 202
Q K + E + + + E + +L+ + +A A+ K E QR +
Sbjct: 440 DQLIKELPELLQRNREILDE---SLRLLDEEEATDNDLRAKFK----ERWQRTPSNELYK 492
Query: 203 HLLKEESKKRELMAKKVESVMQSQLQQAIHMITSDVTHLHTSKESLATRQPSEQSLIDST 262
L E + R ++ K V++ Q+++ + L + L
Sbjct: 493 PLRAEGTNFRTVLDKAVQA--DGQVKECYQSHRDTIVLLCKPEPEL-------------- 536
Query: 263 TDTNCPVTQQYVPSSNQQYAPSSNQQYSIPTSNINQQYSMFSADSTHMNIVERDIPNSAD 322
+PS+N ++ + + S +E D+ +
Sbjct: 537 --------NAAIPSANPAKTMQGSEV----VNVLKSLLSNLDEVKKEREGLENDLKSVNF 584
Query: 323 DMRKYIEMQYSMFSADSTHMNIVERDIPNSADDMRKYIEMLLEKPPGNPVSDLEAEVKDS 382
DM + + ++ + ++ L+K L ++ S
Sbjct: 585 DMTSKFLTALAQDGV-INEEALSVTELDRVYGGLTTKVQESLKK-----QEGLLKNIQVS 638
Query: 383 AGPMTSFLESSVTSDIFNEPALYTKTVRSVTLKISKEKIESLERNLQTETQRSRKLEEEL 442
F + +++ N + +++ L + + L NL+ T+ +L E L
Sbjct: 639 ---HQEFSKMKQSNNEANL---REEVLKN--LATAYDNFVELVANLKEGTKFYNELTEIL 690
Query: 443 QDTRQTCEEVV 453
+ C ++V
Sbjct: 691 VRFQNKCSDIV 701
>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon
degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO
reductase family; HET: MES MGD MD1 HEM; 1.88A
{Aromatoleum aromaticum}
Length = 976
Score = 38.9 bits (90), Expect = 0.014
Identities = 25/98 (25%), Positives = 35/98 (35%), Gaps = 10/98 (10%)
Query: 1190 EKPPKVLFLLG-------ADEGSISRDDVGKDC-FIIYQGHHGDHGASIADAILPGAAYT 1241
+K P+V LL + D + I A AD +LP A Y
Sbjct: 597 DKTPQVYMLLSQNPMRRKRSGAKMFPDVLFPKLKMIFALETRMSSSAMYADIVLPCAWYY 656
Query: 1242 EKQ--STYVNTEGRAQQTLTAVTPPGLAREDWKIIRAL 1277
EK +T + +V PPG RE+W I +
Sbjct: 657 EKHEMTTPCSGNPFFTFVDRSVAPPGECREEWDAIALI 694
>1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor, DMSO,
molybdopte oxidoreductase; HET: GLC MGD EPE; 1.30A
{Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1 PDB:
4dmr_A* 1dmr_A* 1e5v_A* 1h5n_A* 2dmr_A* 3dmr_A* 1e61_A*
1e60_A* 1e18_A* 1dms_A*
Length = 780
Score = 38.2 bits (89), Expect = 0.023
Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 9/78 (11%)
Query: 1208 RDDVGKDCFIIYQGHHGDHGASIADAILPGAAYTEKQSTYVNTEGR------AQQTLTAV 1261
K I Q A AD +LP E+ + ++ V
Sbjct: 446 LKAWEKLETFIVQDFQWTATARHADIVLPATTSYERNDIESVGDYSNRAILAMKK---VV 502
Query: 1262 TPPGLAREDWKIIRALSE 1279
P AR D+ I AL+E
Sbjct: 503 DPLYEARSDYDIFAALAE 520
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 37.4 bits (87), Expect = 0.034
Identities = 21/140 (15%), Positives = 50/140 (35%), Gaps = 16/140 (11%)
Query: 400 NEPALYTKTVRSVTL--KISKEKIESLERNLQTETQRSRKLEEELQDTRQTCEEVVRKEV 457
N PA + S+ L S + + + E + ++ E ++K
Sbjct: 85 NPPAAVKLALESIALLLGESTTDWKQIRSIIMRENFIPTIVNFSAEEISDAIREKMKKNY 144
Query: 458 SIVTVTLFLERLRSSHSKRSKNADSLVRLQKAQDEIQTLLAKSASIKTELREFYQTQLNN 517
+ ++ S A +V+ AQ +L + ++ EL++
Sbjct: 145 MSNPSYNYEIV-----NRASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQK-------- 191
Query: 518 NVKEKLKEFQTQLDSAELTL 537
+++ K+ Q +L++ L +
Sbjct: 192 -LEDDAKDNQQKLEALLLQV 210
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein,
nuclear protein, neurogenesis, cytosk LIS1 binding,
differentiation; 2.24A {Rattus norvegicus}
Length = 189
Score = 35.1 bits (80), Expect = 0.078
Identities = 29/147 (19%), Positives = 54/147 (36%), Gaps = 7/147 (4%)
Query: 418 KEKIESLERNLQTETQRSRKLEEELQDTRQTCEEVVRKEVSIVTVTLFLERLRSSHSKRS 477
K+ + L + SR+LE EL+ E+ R + L E
Sbjct: 23 KQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQ-RLKYEVEALKEKLEH 81
Query: 478 KNADSLVRLQKAQDEIQTLLAKSASIKTELREFYQTQ-----LNNNVKEKLKEFQTQLDS 532
+ A S ++ +D++ A + +RE Q L++F+ +L+
Sbjct: 82 QYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQ 141
Query: 533 A-ELTLHREFQQKEKTIVENAAKQLKQ 558
A E E + EK + + ++LK
Sbjct: 142 AIERNAFLESELDEKESLLVSVQRLKD 168
Score = 31.2 bits (70), Expect = 1.6
Identities = 32/165 (19%), Positives = 64/165 (38%), Gaps = 8/165 (4%)
Query: 1 QKAQDEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQ 60
Q+A+DE+ S ++ EL N+ Q + Q L + ++K +L Y
Sbjct: 27 QEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQS 86
Query: 61 LNNNQKAQDEIQTLLAKSASIKTELREFYQTQ-----LNNNVKEKLKEFQTQLDSA-ELT 114
+D++ A + +RE Q L++F+ +L+ A E
Sbjct: 87 YKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERN 146
Query: 115 LHREFQQKEKTIVENAAKQLKQISENEFKQKEKTIVENAAKQLKQ 159
E + EK + + ++LK E ++E + E + ++
Sbjct: 147 AFLESELDEKESLLVSVQRLKD--EARDLRQELAVRERQQEVTRK 189
Score = 30.5 bits (68), Expect = 2.8
Identities = 26/151 (17%), Positives = 57/151 (37%), Gaps = 12/151 (7%)
Query: 417 SKEKIESLERNLQTETQRSRKLEEELQDTRQTCEEVVRK-----EVSIVTVTLFLERLRS 471
S+E LE L QR+R L+ + Q + E + K S V++ + L
Sbjct: 40 SRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQ 99
Query: 472 SHSKRSKNADSLVRLQKAQDEIQTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQLD 531
+ + + + + L++A D+++ + + + N E+ +++LD
Sbjct: 100 TRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRL-----NQAIERNAFLESELD 154
Query: 532 SAELTLHREFQQKEKTIVENAAKQLKQISEK 562
E Q+ K + ++L +
Sbjct: 155 EKE--SLLVSVQRLKDEARDLRQELAVRERQ 183
>1q16_A Respiratory nitrate reductase 1 alpha chain; membrane protein,
electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA
3PH; 1.90A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1
PDB: 3ir7_A* 1y5i_A* 1siw_A* 1y4z_A* 1r27_A* 1y5l_A*
1y5n_A* 3ir6_A* 3ir5_A* 3egw_A*
Length = 1247
Score = 36.2 bits (83), Expect = 0.082
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 1231 ADAILPGAAYTEKQSTYVNTEGRAQQTLT-AVTPPGLAREDWKIIRALSEGVS 1282
+D ILP A + EK + L+ AV P A+ DW+I +A+++ S
Sbjct: 783 SDIILPTATWYEKDDMNTSDMHPFIHPLSAAVDPAWEAKSDWEIYKAIAKKFS 835
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport,
CF(0), stator, transport, acetylation, hydrogen ION
transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Length = 214
Score = 35.1 bits (80), Expect = 0.091
Identities = 25/133 (18%), Positives = 49/133 (36%), Gaps = 18/133 (13%)
Query: 49 IKTELREFYQTQLNNNQ---KAQDEIQTLLAKSASIKTELREFYQTQLNNNVKEKL---- 101
+L E Q + Q + Q L+ K + R L +E+L
Sbjct: 89 KIAQLEEVKQASIKQIQDAIDMEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLHRVY 148
Query: 102 KEFQTQLDS--AELTLHREFQQKE--KTIVENAAKQLKQISENEFKQKEKTIVENAAKQL 157
+E + +LD + + R+ +Q+ + + + + Q+EK + L
Sbjct: 149 REVKNRLDYHISVQNMMRQKEQEHMINWVEKRVVQSIS-------AQQEKETIAKCIADL 201
Query: 158 KQISEKPGATKLM 170
K +S+K A +M
Sbjct: 202 KLLSKKAQAQPVM 214
Score = 32.0 bits (72), Expect = 1.1
Identities = 25/173 (14%), Positives = 61/173 (35%), Gaps = 11/173 (6%)
Query: 398 IFNEPALYTKTVRSVTLKISKEKIESLERNLQTETQRSRKLEEELQDTRQTCEEVVRKEV 457
+ + + I K+ S+ + + +L++ +Q + ++ +
Sbjct: 52 VITPETFSAISTIGFLVYIVKKYGASVGEFADKLNE---QKIAQLEEVKQASIKQIQDAI 108
Query: 458 SIVTVTLFLERLRSSHSKRSKNADSLVRLQKAQDEIQTLLAKSASIKTELREFYQTQLNN 517
+ L + R +N + + + L +K L Y + N
Sbjct: 109 DMEKSQQALVQKRHYLFDVQRN---NIAMALEVTYRERLHRVYREVKNRL--DYHISVQN 163
Query: 518 NVKEKLKEFQTQLDSAELTLHREFQ-QKEKTIVENAAKQLKQISEKPGATKLM 569
+++K +E ++ E + + Q+EK + LK +S+K A +M
Sbjct: 164 MMRQKEQEHM--INWVEKRVVQSISAQQEKETIAKCIADLKLLSKKAQAQPVM 214
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A
{Saccharomyces cerevisiae}
Length = 956
Score = 36.2 bits (82), Expect = 0.094
Identities = 35/282 (12%), Positives = 85/282 (30%), Gaps = 14/282 (4%)
Query: 14 SASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQLNNNQKA------ 67
+ +K + E+ Q Q +N + + + + +K R + QLN +
Sbjct: 574 NELLKQQSFEYVQFQTLSNFQILLSVFNKIFEKLEMKKSSRGYILHQLNLFKITLDERIK 633
Query: 68 ---QDEIQTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQLDSAELTLHREFQQKEK 124
D+ + + IK E + N + + K + L A+ +
Sbjct: 634 KSKIDDADKFIRDNQPIKKEENIVNEDGPNTSRRTKRPKQIRLLSIADS-----SDESST 688
Query: 125 TIVENAAKQLKQISENEFKQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAEN 184
K + I + + + E +QLK + + +K+ + + + +E +
Sbjct: 689 EDSNVFKKDGESIEDGAYGENEDENDSEMQEQLKSMINELINSKISTFLRDQMDQFELKI 748
Query: 185 KKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQAIHMITSDVTHLHTS 244
L ++ + + L K L ++ + + + + T +
Sbjct: 749 NALLDKILEEKVTRIIEQKLGSHTGKFSTLKRPQLYMTEEHNVGFDMEVPKKLRTSGKYA 808
Query: 245 KESLATRQPSEQSLIDSTTDTNCPVTQQYVPSSNQQYAPSSN 286
+ S S + + Y S +
Sbjct: 809 ETVKDNDDHQAMSTTASPSPEQDQEAKSYTDEQEFMLDKSID 850
Score = 32.4 bits (72), Expect = 1.2
Identities = 42/341 (12%), Positives = 101/341 (29%), Gaps = 26/341 (7%)
Query: 5 DEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTELR----EFYQTQ 60
+ L+ + + + T Q+++ +Q + + L+ E+ Q Q
Sbjct: 529 NFYSLLIERPSQLTFASSHNPDTHPTQKQESEGPLQMSQLDTTQLNELLKQQSFEYVQFQ 588
Query: 61 LNNNQKAQDEIQTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQLDSAELTLHREFQ 120
+N + + + + +K R + QLN ++ E +
Sbjct: 589 TLSNFQILLSVFNKIFEKLEMKKSSRGYILHQLNLF----------KITLDERIKKSKID 638
Query: 121 QKEKTIVENAAKQLKQISENEFKQKEKTIV-ENAAKQLKQISEKPGATKLMLDFKAKCEV 179
+K I +N + ++ NE +L I++ + K +
Sbjct: 639 DADKFIRDNQPIKKEENIVNEDGPNTSRRTKRPKQIRLLSIADSSDESSTEDSNVFKKDG 698
Query: 180 YEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQAIHMITSDVT 239
E+ + D +++E + +S EL+ K+ + ++ Q+ Q I + +
Sbjct: 699 ESIEDGAYGENEDENDSEMQE-----QLKSMINELINSKISTFLRDQMDQFELKINALLD 753
Query: 240 HLHTSKESLATRQPSEQSLIDSTTDTNCPVTQQYVPSSNQQYAPSSNQQYSIPTSNINQQ 299
+ K + Q +T + + + S +
Sbjct: 754 KILEEKVTRIIEQKLGSHTGKFSTLKRPQLYMTEEHNVGFDMEVPKKLRTSGKYAETV-- 811
Query: 300 YSMFSADSTHMNIVERDIPNSADDMRKYIEMQYSMFSADST 340
+ H + P+ D F D +
Sbjct: 812 ----KDNDDHQAMSTTASPSPEQDQEAKSYTDEQEFMLDKS 848
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 33.9 bits (77), Expect = 0.27
Identities = 37/194 (19%), Positives = 83/194 (42%), Gaps = 4/194 (2%)
Query: 66 KAQDEIQTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQLDSAELTLHREFQQKEKT 125
A D A + + ++ ++++KLK + +LD L ++ E
Sbjct: 17 NALDRADEAEADKKAAEDRSKQL--EDELVSLQKKLKATEDELDKYSEALKDAQEKLELA 74
Query: 126 IVENAAKQLKQISENEFKQKEKTIVENAAKQLKQISEK-PGATKLMLDFKAKCEVYEAEN 184
+ + S N Q + ++ A ++L +K A K + + +V E+
Sbjct: 75 EKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRA 134
Query: 185 KKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQAIHMITSDVTHLHTS 244
+K + ++ ++I+LKE H+ ++ +K E +A+K+ ++S L++A
Sbjct: 135 QKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVI-IESDLERAEERAELSEGKCAEL 193
Query: 245 KESLATRQPSEQSL 258
+E + T + +SL
Sbjct: 194 EEEIKTVTNNLKSL 207
Score = 33.1 bits (75), Expect = 0.49
Identities = 28/213 (13%), Positives = 81/213 (38%), Gaps = 11/213 (5%)
Query: 418 KEKIESLERNLQTETQRSRKLEEELQDTRQTC----EEVVRKEVSIVTVTLFLERLRSSH 473
K+K++ L+ + + R+ + E + + +E+V + + L++ +
Sbjct: 5 KKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEAL 64
Query: 474 SKRSKNADSLV-RLQKAQDEIQTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQLDS 532
+ + + A+ ++ +L + + EL + +KL+E + D
Sbjct: 65 KDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDR--AQERLATALQKLEEAEKAADE 122
Query: 533 AELTLHREFQQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQ 592
+E R + E ++ K Q + A + D K E + ++++L +
Sbjct: 123 SE----RGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLER 178
Query: 593 RDIKLKETNHLLKEESKKRELMAKKVESVMQSQ 625
+ + + + E ++ + + ++S+
Sbjct: 179 AEERAELSEGKCAELEEEIKTVTNNLKSLEAQA 211
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A
{Drosophila melanogaster} SCOP: a.238.1.1
Length = 244
Score = 33.7 bits (76), Expect = 0.28
Identities = 20/169 (11%), Positives = 51/169 (30%), Gaps = 11/169 (6%)
Query: 429 QTETQRSRKLEEELQDTRQTCEEVVRKEVSIVTVTLFLERLRSSHSKRSKNADSLVRLQK 488
+T + + + + ++ ++ +R++ + DS+ + +
Sbjct: 33 RTADEIFDDHLNNFNRQQASANRLQKE------FNNYIRCVRAAQAASKTLMDSVCEIYE 86
Query: 489 AQDEIQTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQLDSAELTLHREFQ-----Q 543
Q L L + +L + V L + Q + + + +
Sbjct: 87 PQWSGYDALQAQTGASESLWADFAHKLGDQVLIPLNTYTGQFPEMKKKVEKRNRKLIDYD 146
Query: 544 KEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQ 592
++ +N + + TK + YE N +L EL
Sbjct: 147 GQRHSFQNLQANANKRKDDVKLTKGREQLEEARRTYEILNTELHDELPA 195
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein,
muscle, Z- LINE, actin-binding protein; 2.8A {Homo
sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Length = 476
Score = 33.7 bits (76), Expect = 0.40
Identities = 25/204 (12%), Positives = 69/204 (33%), Gaps = 11/204 (5%)
Query: 33 QKAQDEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQ 92
+K +Q L + + + + + + +QT L S E
Sbjct: 40 EKTMQAMQKKLEDFRDYRRKHKPPKVQEKCQLEINFNTLQTKLRISNRPAFMPSEGKMVS 99
Query: 93 LNNNVKEKLKEFQTQLDSAE----------LTLHREFQQKEKTIVENAAKQLKQISENEF 142
++L++ + + L +F+QK T A + + + + ++
Sbjct: 100 DIAGAWQRLEQAEKGYEEWLLNEIRRLERLEHLAEKFRQKASTHETWAYGKEQILLQKDY 159
Query: 143 KQKEKTIVENAAKQLKQISEKPGATKLMLD-FKAKCEVYEAENKKLKAELTQRDIKLKET 201
+ T V ++ + A + ++ A + + + R K+ +
Sbjct: 160 ESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQ 219
Query: 202 NHLLKEESKKRELMAKKVESVMQS 225
L ++KR +++E ++++
Sbjct: 220 WDRLGTLTQKRREALERMEKLLET 243
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.40
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 12/37 (32%)
Query: 1118 KKLSAAKKPLIVVGADISDGAAVLALVQQLAAKVTCE 1154
KKL A+ K AD D A LA+ K T E
Sbjct: 23 KKLQASLKLY----AD--DSAPALAI------KATME 47
Score = 30.3 bits (67), Expect = 2.7
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 14/37 (37%)
Query: 98 KEKLKEFQTQL-----DSA-ELTLHREFQQKEKTIVE 128
K+ LK+ Q L DSA L + K +E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAI--------KATME 47
Score = 30.3 bits (67), Expect = 2.7
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 14/37 (37%)
Query: 520 KEKLKEFQTQL-----DSA-ELTLHREFQQKEKTIVE 550
K+ LK+ Q L DSA L + K +E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAI--------KATME 47
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of
spectrin, alpha helical linker region, 3- helix
coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP:
a.7.1.1 a.7.1.1
Length = 214
Score = 31.8 bits (72), Expect = 1.00
Identities = 28/197 (14%), Positives = 60/197 (30%), Gaps = 19/197 (9%)
Query: 5 DEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQLNNN 64
E + LL + A IK E+ QD Q + + + L
Sbjct: 33 PEAEQLLQQHAGIKDEIDGH-----------QDSYQRVKESGEKVIQGQTDPEYLLLGQR 81
Query: 65 -QKAQDEIQTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQLDSAELTLHREFQQKE 123
+ L S L + Q ++ K+ + L + E TL
Sbjct: 82 LEGLDTGWDALGRMWESRSHTLAQCLGFQE---FQKDAKQAEAILSNQEYTLAHLEPPDS 138
Query: 124 KTIVENAAKQLKQISENEFKQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAE 183
E ++ + + ++ K ++E + + K K ++ E
Sbjct: 139 LEAAEAGIRKFEDF-LGSMENNRDKVLSPVDSGNKLVAEGNLYSDKI---KEKVQLIEDR 194
Query: 184 NKKLKAELTQRDIKLKE 200
++K + + + L++
Sbjct: 195 HRKNNEKAQEASVLLRD 211
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 32.4 bits (74), Expect = 1.1
Identities = 17/175 (9%), Positives = 48/175 (27%), Gaps = 18/175 (10%)
Query: 61 LNNNQKAQDEIQTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQLDSAELTLHREFQ 120
++ + + L +I + + F Q +++ Q + E
Sbjct: 121 IDGKTVSYKDYSIFLENE-NILIKAKNFLVFQ------GDVEQIAAQSPVELSRMFEEVS 173
Query: 121 QKEKTIVENAAKQLKQISENEFKQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVY 180
+ E + K ++ + +LK +L + Y
Sbjct: 174 GSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGELKTYKSP---GLEVLFQGPRGSRY 230
Query: 181 EAENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQLQQAIHMIT 235
+ + + + + L EE K K++ + ++ ++
Sbjct: 231 DEAEGRFEVINNETE-------QLKAEEKKILNQF-LKIKKKRKELFEKTFDYVS 277
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A
{Helicobacter pylori}
Length = 877
Score = 32.2 bits (72), Expect = 1.4
Identities = 29/222 (13%), Positives = 72/222 (32%), Gaps = 9/222 (4%)
Query: 3 AQDEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQLN 62
+DEI L+ K A+ + Q ++ D+++ + EF +
Sbjct: 656 QKDEIFALINKEANRDARAIAYTQNLKGIKRELSDKLEKISKDLKDFSKSFDEFKNGKNK 715
Query: 63 NNQKAQDEIQTLLAKSASIKTELREFYQT----QLNNNVKEKLKEFQTQLDSAELTLHRE 118
+ KA++ ++ L + + N K + +++ A+ L
Sbjct: 716 DFSKAEETLKALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENS 775
Query: 119 FQ-----QKEKTIVENAAKQLKQISENEFKQKEKTIVENAAKQLKQISEKPGATKLMLDF 173
+ QK V+N + + + + ++ + K+ + +
Sbjct: 776 VKDVIINQKVTDKVDNLNQAVSVAKAMGDFSRVEQVLADLKNFSKEQLAQQAQKNEDFNT 835
Query: 174 KAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELM 215
E+Y++ + L + E L K S ++ +
Sbjct: 836 GKNSELYQSVKNSVNKTLVGNGLSGIEATALAKNFSDIKKEL 877
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes,
curvature membrane, structural genomics consortium;
1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Length = 243
Score = 31.7 bits (71), Expect = 1.4
Identities = 22/167 (13%), Positives = 58/167 (34%), Gaps = 9/167 (5%)
Query: 429 QTETQRSRKLEEELQDTRQTCEEVVRKEVSIVTVTLFLERLRSSHSKRSKNADSLVRLQK 488
+T+ ++ + + + + R+ + +L ++ K +SL + +
Sbjct: 34 ETKDEQFEEYVQNFKRQEAEGTRLQRE------LRGYLAAIKGMQEASMKLTESLHEVYE 87
Query: 489 AQDEIQTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQLDSAELTLH-REFQQKEKT 547
+ + L E + +L + L + Q + + R + +
Sbjct: 88 PDWYGREDVKMVGEKCDVLWEDFHQKLVDGSLLTLDTYLGQFPDIKNRIAKRSRKLVDYD 147
Query: 548 IVENAAKQLKQISEKPGA--TKLMLDFKAKCEVYEAENKKLKAELTQ 592
+ + L+ K + +K +F+ +V+E N L+ EL
Sbjct: 148 SARHHLEALQSSKRKDESRISKAEEEFQKAQKVFEEFNVDLQEELPS 194
Score = 30.5 bits (68), Expect = 2.9
Identities = 25/151 (16%), Positives = 54/151 (35%), Gaps = 9/151 (5%)
Query: 50 KTELREFYQTQLNNNQKA-QDEIQTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQL 108
+ +E T+L + I+ + S + L E Y+ + +E +K +
Sbjct: 46 NFKRQEAEGTRLQRELRGYLAAIKGMQEASMKLTESLHEVYEP--DWYGREDVKMVGEKC 103
Query: 109 DSAELTLHREFQQKEKTIVENAAKQLKQISENEFKQKEKTI-VENAAKQLKQISEKPGAT 167
D H++ ++ Q I K+ K + ++A L+ +
Sbjct: 104 DVLWEDFHQKLVDGSLLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQSSKRKD 163
Query: 168 KLML-----DFKAKCEVYEAENKKLKAELTQ 193
+ + +F+ +V+E N L+ EL
Sbjct: 164 ESRISKAEEEFQKAQKVFEEFNVDLQEELPS 194
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils,
endocytosis/exocytosis, protein complex,
endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A
2rnd_A
Length = 251
Score = 31.3 bits (70), Expect = 1.8
Identities = 21/159 (13%), Positives = 50/159 (31%), Gaps = 9/159 (5%)
Query: 437 KLEEELQDTRQTCEEVVRKEVSIVTVTLFLERLRSSHSKRSKNADSLVRLQKAQDEIQTL 496
+ + + + + +L +++ H K + L + + +
Sbjct: 56 QCVQNFNKQLTEGTRLQKD------LRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDE 109
Query: 497 LAKSASIKTELREFYQTQLNNNVKEKLKEFQTQLDSAELTL-HREFQQKEKTIVENAAKQ 555
K A L Y +L + + + Q + + R + + + +
Sbjct: 110 ANKIAENNDLLWMDYHQKLVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYES 169
Query: 556 LKQISEKPGA--TKLMLDFKAKCEVYEAENKKLKAELTQ 592
L+ +K A K + +V+E N L+ EL
Sbjct: 170 LQTAKKKDEAKIAKAEEELIKAQKVFEEMNVDLQEELPS 208
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein,
developmental protein, structural protei
phosphorylation, transport, microtubule; 2.10A {Homo
sapiens}
Length = 111
Score = 29.9 bits (67), Expect = 1.9
Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 8/107 (7%)
Query: 31 NNQKAQDEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQ 90
N+ Q + Q L + ++K +L Y +D++ A + +RE Q
Sbjct: 4 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ 63
Query: 91 T-----QLNNNVKEKLKEFQTQLDSA---ELTLHREFQQKEKTIVEN 129
+ L++F+ +L+ A L E +KE +V
Sbjct: 64 ANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSV 110
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil,
alanine, axial stagger, radius, SIDE-chain packing,
crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Length = 147
Score = 30.4 bits (68), Expect = 2.2
Identities = 15/114 (13%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 417 SKEKIESLERNLQTETQRSRKLEEELQDTRQTCEEVVRKEVSIVTVTLFLERLRSSHSKR 476
S+ ++ +E Q + ++ E +L++ + E+ RK + + +E +R
Sbjct: 36 SERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEER 95
Query: 477 SKNADSLVRLQKAQDEIQTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQL 530
++ ++ + + ++E++T+ S++ ++ E N +++ ++ + +
Sbjct: 96 AELSEG--KCAELEEELKTVTNNLKSLEDKVEEL--LSKNYHLENEVARLKKLV 145
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain,
protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Length = 265
Score = 31.1 bits (69), Expect = 2.5
Identities = 28/210 (13%), Positives = 62/210 (29%), Gaps = 22/210 (10%)
Query: 418 KEKIESLERNLQTETQRSRKLEEELQDTRQTCEEVVRKEVSIVTVTLFLERLRSSHSKRS 477
+ + E + + +L + + E+ + E+ R
Sbjct: 20 RSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDD 79
Query: 478 KNADS-LVRLQKAQDEIQTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQLDSAELT 536
+ S L + K DE+ + TQL + + + +F+ + LT
Sbjct: 80 EVMSSTLQQFSKVIDELSSC-----------HAVLSTQLADAMMFPITQFKERDLKEILT 128
Query: 537 LHREFQQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIK 596
L FQ + + ++ + YE + Q
Sbjct: 129 LKEVFQIASNDHDAAINRYSRLSKKR----------ENDKVKYEVTEDVYTSRKKQHQTM 178
Query: 597 LKETNHLLKEESKKRELMAKKVESVMQSQL 626
+ L + KK+ + + + MQ+Q+
Sbjct: 179 MHYFCALNTLQYKKKIALLEPLLGYMQAQI 208
>3eww_A Ompdecase, orotidine-5'-phosphate decarboxylase; TIM barrel, unusual
catalysis, disease mutati glycosyltransferase, lyase,
multifunctional enzyme; HET: U1P; 1.10A {Homo sapiens}
PDB: 2qcl_A* 2qcm_A* 3ewu_A* 2qcf_A* 3ex6_A* 3ex4_A*
2qcd_A* 2qcc_A 2qcg_A* 2qch_A* 2qcn_A* 2qce_A* 3ewz_A*
3ex1_A* 3ex2_A* 3ex3_A* 3ex0_A* 3ex5_A* 3l0k_A* 3l0n_A*
...
Length = 260
Score = 30.7 bits (69), Expect = 2.5
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 1113 SHPFSKKLS---AAKKPLIVVGADISDGAAVLALVQQLAAKV 1151
HP + KL K+ + + AD+S +L L L +
Sbjct: 16 IHPVASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSI 57
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase;
4.00A {Methanosarcina mazei}
Length = 621
Score = 31.3 bits (70), Expect = 2.6
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 123 EKTIVENAAKQLKQISENEFKQKEKTIV--ENAAKQLKQI 160
E I E AK+ K IS EF +K + I+ ++A + L
Sbjct: 2 ETPIAEELAKKQKSISVAEFFEKNRQILGFDSAPRSLITT 41
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A
{Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Length = 143
Score = 29.9 bits (67), Expect = 2.8
Identities = 13/102 (12%), Positives = 38/102 (37%), Gaps = 6/102 (5%)
Query: 37 DEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAK-----SASIKTELREFYQT 91
+ +A+ + L ++ + + Q+ + ++Q + K + S +T+L +
Sbjct: 12 GSLFQQVAQKTGVSNTLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVM- 70
Query: 92 QLNNNVKEKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQ 133
+K + F+ + + +T V++ A
Sbjct: 71 AQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVANS 112
Score = 28.7 bits (64), Expect = 7.4
Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 486 LQKAQDEIQTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQLDSAELTLHREFQQKE 545
LQ+ + ++Q + K S+K +T+L +V + + F + + E R ++
Sbjct: 39 LQRMETDLQAKMKKLQSMKAGSD---RTKLEKDVMAQRQTFAQKAQAFEQDRARRSNEER 95
Query: 546 KTIVENAAKQLKQISEKPG 564
+V +K ++
Sbjct: 96 GKLVTRIQTAVKSVANSQD 114
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET:
MSE; 2.33A {Homo sapiens}
Length = 168
Score = 29.7 bits (66), Expect = 3.7
Identities = 22/149 (14%), Positives = 55/149 (36%), Gaps = 2/149 (1%)
Query: 416 ISKEKIESLERNLQTETQRSRKLEEELQDTRQTCEEVVRKEVSI-VTVTLFLERLRSSHS 474
++ EK+ L++ L+ R + R++ E+ + + ER R +
Sbjct: 3 LANEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILEN 62
Query: 475 KRSKNADSLVRLQKAQDEIQTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQLDSAE 534
+S+ +LQ + + + + +L+ + K + + + E
Sbjct: 63 SKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKE 122
Query: 535 LTLHREFQQKEKTIVE-NAAKQLKQISEK 562
+KEK +E + +LK + ++
Sbjct: 123 AQDMLNHSEKEKNNLEIDLNYKLKSLQQR 151
Score = 28.9 bits (64), Expect = 7.5
Identities = 21/150 (14%), Positives = 45/150 (30%), Gaps = 5/150 (3%)
Query: 15 ASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTL 74
S+ E Q QL + TE+ + + N++ Q+ + L
Sbjct: 1 GSLANEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRIL 60
Query: 75 LAKSASIKTELREFYQ-----TQLNNNVKEKLKEFQTQLDSAELTLHREFQQKEKTIVEN 129
+ + + + + E + + Q ++ S + + EK E
Sbjct: 61 ENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGER 120
Query: 130 AAKQLKQISENEFKQKEKTIVENAAKQLKQ 159
Q + K + + K L+Q
Sbjct: 121 KEAQDMLNHSEKEKNNLEIDLNYKLKSLQQ 150
>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium
tumefaciens} PDB: 2hk1_A*
Length = 309
Score = 30.6 bits (69), Expect = 3.8
Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 13/59 (22%)
Query: 310 MNIVERDIPNSADDMRKYIE--------MQYSMFSADSTHMNIVERDIPNSADDMRKYI 360
+N E + N+A + +++ + D+ HMNI E ++ +
Sbjct: 172 LNRFENHVLNTAAEGVAFVKDVGKNNVKVML-----DTFHMNIEEDSFGDAIRTAGPLL 225
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR
adaptor; 1.91A {Homo sapiens}
Length = 237
Score = 30.1 bits (67), Expect = 4.0
Identities = 21/159 (13%), Positives = 56/159 (35%), Gaps = 9/159 (5%)
Query: 437 KLEEELQDTRQTCEEVVRKEVSIVTVTLFLERLRSSHSKRSKNADSLVRLQKAQDEIQTL 496
+ + ++ + + FL ++ H + +++L + ++ +
Sbjct: 37 QSASNFYQQQAEGHKLYKD------LKNFLSAVKVMHESSKRVSETLQEIYSSEWDGHEE 90
Query: 497 LAKSASIKTELREFYQTQLNNNVKEKLKEFQTQLDSAELTLH-REFQQKEKTIVENAAKQ 555
L L E Y+ +L + ++ + Q + + R + + + +
Sbjct: 91 LKAIVWNNDLLWEDYEEKLADQAVRTMEIYVAQFSEIKERIAKRGRKLVDYDSARHHLEA 150
Query: 556 LKQISEKPGA--TKLMLDFKAKCEVYEAENKKLKAELTQ 592
++ +K A K +F V+E N++L EL
Sbjct: 151 VQNAKKKDEAKTAKAEEEFNKAQTVFEDLNQELLEELPI 189
Score = 29.0 bits (64), Expect = 8.5
Identities = 25/151 (16%), Positives = 54/151 (35%), Gaps = 9/151 (5%)
Query: 50 KTELREFYQTQLNNNQKA-QDEIQTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQL 108
++ +L + K ++ + S + L+E Y ++ + + E+LK
Sbjct: 41 NFYQQQAEGHKLYKDLKNFLSAVKVMHESSKRVSETLQEIYSSEWDGH--EELKAIVWNN 98
Query: 109 DSAELTLHREFQQKEKTIVENAAKQLKQISENEFKQKEKTI-VENAAKQLKQISEKPGAT 167
D + + +E Q +I E K+ K + ++A L+ +
Sbjct: 99 DLLWEDYEEKLADQAVRTMEIYVAQFSEIKERIAKRGRKLVDYDSARHHLEAVQNAKKKD 158
Query: 168 KLML-----DFKAKCEVYEAENKKLKAELTQ 193
+ +F V+E N++L EL
Sbjct: 159 EAKTAKAEEEFNKAQTVFEDLNQELLEELPI 189
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A
{Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Length = 434
Score = 30.3 bits (69), Expect = 4.3
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 991 EVAGVVGSLADAEAMVALKDLLNKLGSEDLYT 1022
++ G ADAE + +L++LG +D+Y
Sbjct: 128 DIFGSDSPEADAEVIALASSILDRLGLQDIYE 159
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase,
microtubule, RB3, stath tubulin, cell cycle; HET: GTP
GDP; 4.17A {Artificial gene}
Length = 240
Score = 29.9 bits (66), Expect = 4.4
Identities = 29/188 (15%), Positives = 68/188 (36%), Gaps = 2/188 (1%)
Query: 33 QKAQDEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQ 92
+ A++ + A+ E RE + + + + + + + K E + +
Sbjct: 52 EAAEERRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKENREA 111
Query: 93 LNNNVKEKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQISENEFKQKEKTIVEN 152
+ E+L+E + E K E A++++ EN Q+ + +
Sbjct: 112 HFAAMLERLQEKDKHAEEVRQRAIEENNNWIKMAKEKLAQKMESNKENRKYQEAELLKHL 171
Query: 153 AAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKR 212
A K+ + A + ++ + E +K+++ R+ L+E+ K
Sbjct: 172 AEKREHEREVIQRAIEENNNWIKMAK--EKLAQKMESNKENREAHFAAMLERLQEKDKHA 229
Query: 213 ELMAKKVE 220
E + K E
Sbjct: 230 EEVRKNKE 237
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A
{Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Length = 290
Score = 30.1 bits (68), Expect = 4.7
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 13/59 (22%)
Query: 310 MNIVERDIPNSADDMRKYIE--------MQYSMFSADSTHMNIVERDIPNSADDMRKYI 360
+N E+ + N A + + + +Q D+ HMNI E ++ + +
Sbjct: 154 VNRFEQWLCNDAKEAIAFADAVDSPACKVQL-----DTFHMNIEETSFRDAILACKGKM 207
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces
cerevisiae} SCOP: c.31.1.5
Length = 361
Score = 30.4 bits (68), Expect = 4.7
Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 1/88 (1%)
Query: 69 DEIQTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQLDSAELTLHREFQQKEKTIVE 128
DE L + + + + Q K + + D L+L + + + +
Sbjct: 275 DEFAEQLVEELGWQEDFEKILTAQGGMGDNSKEQLLEIVHDLENLSLDQS-EHESADKKD 333
Query: 129 NAAKQLKQISENEFKQKEKTIVENAAKQ 156
++L +E + + AAK+
Sbjct: 334 KKLQRLNGHDSDEDGASNSSSSQKAAKE 361
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin,
endocytosis/exocytosis complex; 3.00A {Saccharomyces
cerevisiae} SCOP: e.25.1.1
Length = 671
Score = 30.4 bits (67), Expect = 5.4
Identities = 23/260 (8%), Positives = 63/260 (24%), Gaps = 14/260 (5%)
Query: 49 IKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQL 108
+ L N K + + + E + NV+ L ++ +
Sbjct: 300 VTIPLESKENGTDNTTAKPLATKKYDIEPNDFFWMENSHLPFPEAAENVEAALNTYKEEA 359
Query: 109 DSAELTLHREFQQKEKTIVENAAKQLKQISEN-EFKQKEKTIVENAAKQLKQISEKPGAT 167
N Q++++ + +K ++ + + +
Sbjct: 360 AEITRKTGVTNISDLDPNSNNDTVQIQEVVKKLPELTAKKNTIDTHMNIFAALLSQLESK 419
Query: 168 KLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKRELMA------KKVES 221
L +E E + R + + + E K R + +
Sbjct: 420 SLD-------TFFEVEQDPGSTKTRSRFLDILKDGKTNNLEDKLRSFIVLYLTSTTGLPK 472
Query: 222 VMQSQLQQAIHMITSDVTHLHTSKESLATRQPSEQSLIDSTTDTNCPVTQQYVPSSNQQY 281
++ D+ L + Q S SL + + + + +
Sbjct: 473 DFVQNVENYFKENDYDINALKYVYKLREFMQLSNMSLQNKSLEDGSDSAFKPSNLTLSGI 532
Query: 282 APSSNQQYSIPTSNINQQYS 301
+ + ++
Sbjct: 533 YGLTEGKLQGGVGSLISGIK 552
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase,
membrane-associated flavoprotein dehydrogenase,
interactions with lipids cell membrane; HET: TDP FAD;
2.50A {Escherichia coli} PDB: 3ey9_A*
Length = 549
Score = 30.2 bits (69), Expect = 6.0
Identities = 5/48 (10%), Positives = 19/48 (39%), Gaps = 8/48 (16%)
Query: 1106 IKQLASGSHPFSKKLSAAKKPLIVVGADISDGAA-VLALVQQLAAKVT 1152
+++LA + L + ++ G+ + ++ ++ A +
Sbjct: 191 LRKLA-------QLLRYSSNIALMCGSGCAGAHKELVEFAGKIKAPIV 231
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon,
mandelate catabolism, T thiazolone diphosphate,
inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas
putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A*
1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A*
2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Length = 528
Score = 30.2 bits (69), Expect = 6.1
Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 12/76 (15%)
Query: 1082 DVAYIGPKVDLRYDYEHLGE-SADLIKQLASGSHPFSKKLSAAKKPLIVVGADISDGAA- 1139
D + R + + L K L++A P IV+G D+ A
Sbjct: 166 DADPQSHHLFDR-HVSSSVRLNDQDLDILV-------KALNSASNPAIVLGPDVDAANAN 217
Query: 1140 --VLALVQQLAAKVTC 1153
+ L ++L A V
Sbjct: 218 ADCVMLAERLKAPVWV 233
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus
norvegicus}
Length = 96
Score = 28.0 bits (62), Expect = 6.4
Identities = 15/94 (15%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Query: 31 NNQKAQDEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQ 90
++++ Q E++ L + + EL + + N + + ++ + A++ + E ++ +
Sbjct: 5 DSEQLQRELKELALEEERLIQELEDVEK----NRKVVAENLEKVQAEAERLDQEEAQYQR 60
Query: 91 TQLNNNVKEKLKEFQTQLDSAELTLHREFQQKEK 124
+ K + E +L S E + Q +K
Sbjct: 61 EY--SEFKRQQLELDDELKSVENQMRYAQMQLDK 92
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship,
oxidation-reduct umpolung, thiamine diphosphate, reaction
intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus
plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A*
2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Length = 603
Score = 29.8 bits (68), Expect = 7.2
Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 10/75 (13%)
Query: 1080 ELDVAYIGPKVDLR-YDYEHLGESADLIKQLASGSHPFSKKLSAAKKPLIVVGADISD-G 1137
++ + + + +L + L AA++PLI G G
Sbjct: 176 QIPAEDWYASANSYQTPLLPEPDVQA-VTRLT-------QTLLAAERPLIYYGIGARKAG 227
Query: 1138 AAVLALVQQLAAKVT 1152
+ L + L +
Sbjct: 228 KELEQLSKTLKIPLM 242
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics,
unknown function, PSI-2, protein struct initiative;
1.90A {Vibrio cholerae} SCOP: d.37.1.1
Length = 160
Score = 28.8 bits (65), Expect = 7.5
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 183 ENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQL 227
NKKL ++QRD+ + + L + + VM + +
Sbjct: 44 ANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFEVMHTDV 88
Score = 28.8 bits (65), Expect = 7.5
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 582 ENKKLKAELTQRDIKLKETNHLLKEESKKRELMAKKVESVMQSQL 626
NKKL ++QRD+ + + L + + VM + +
Sbjct: 44 ANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFEVMHTDV 88
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose
3-epimeras tagatose 3-epimerase, isomerase; 2.20A
{Thermotoga maritima}
Length = 290
Score = 29.3 bits (66), Expect = 8.2
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 13/58 (22%)
Query: 311 NIVERDIPNSADDMRKYIE--------MQYSMFSADSTHMNIVERDIPNSADDMRKYI 360
N E D N+ DD + + + D+ HMNI E +IP S + +
Sbjct: 172 NRYETDFINTIDDALRILRKINSNRVGILA-----DTFHMNIEEVNIPESLKRAGEKL 224
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus
SP} PDB: 2zdi_A
Length = 117
Score = 28.0 bits (62), Expect = 9.0
Identities = 24/114 (21%), Positives = 50/114 (43%), Gaps = 13/114 (11%)
Query: 26 QTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTEL 85
Q L + Q ++Q ++ + ++ EL E +KA DEI++L + KT
Sbjct: 9 QAMLGQLESYQQQLQLVVQQKQKVQLELTE--------AKKALDEIESLPDDAVVYKTVG 60
Query: 86 REFYQTQLNNNVKEKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQISE 139
+T + + E + ++++ E+ L +++EK + E + QI
Sbjct: 61 TLIVKT----TKDKAVAELKEKIETLEVRL-NALERQEKKLNEKLKELTAQIQS 109
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme
transport, transport protein; HET: HEM; 2.05A {Shigella
dysenteriae} PDB: 2rg7_A
Length = 256
Score = 29.1 bits (66), Expect = 9.3
Identities = 18/108 (16%), Positives = 39/108 (36%), Gaps = 20/108 (18%)
Query: 1104 DLIKQLAS---GSHPFSKKLSAAKKPLIVVGADISDGAAVLALVQQLAAKVTCESDVPCD 1160
D + + G +L A K ++ + + + A ++QLA
Sbjct: 61 DSV--ITWQDAGPQIVLDQLRAQKVNVVTLPRVPATLEQMYANIRQLA------------ 106
Query: 1161 WKVLNILQKAASQVAAL--DIGYKPGTSAIREKPPKVLFLLGADEGSI 1206
K L + ++ + V + + A ++ P K +F+L A +
Sbjct: 107 -KTLQVPEQGDALVTQINQRLERVQQNVAAKKAPVKAMFILSAGGSAP 153
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate,
benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas
fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A*
3d7k_A*
Length = 563
Score = 29.4 bits (67), Expect = 9.7
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 1077 LTNELDVAYIGPKVDLR-YDYEHLGESADLIKQLASGSHPFSKKLSAAKKPLIVVGADIS 1135
L N++D + DL + + AD + Q L A++P+IV+G++ S
Sbjct: 166 LMNQIDEDSV-IIPDLVLSAHGARPDPAD-LDQAL-------ALLRKAERPVIVLGSEAS 216
Query: 1136 DGAA---VLALVQQLAAKVTC 1153
A + A V V
Sbjct: 217 RTARKTALSAFVAATGVPVFA 237
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.128 0.353
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 18,791,641
Number of extensions: 1134688
Number of successful extensions: 3047
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2897
Number of HSP's successfully gapped: 227
Length of query: 1334
Length of database: 6,701,793
Length adjustment: 105
Effective length of query: 1229
Effective length of database: 3,770,088
Effective search space: 4633438152
Effective search space used: 4633438152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (27.9 bits)