RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11935
(1334 letters)
>d2fug32 c.81.1.1 (3:247-685) NADH-quinone oxidoreductase chain 3,
Nqo3 {Thermus thermophilus [TaxId: 274]}
Length = 439
Score = 222 bits (567), Expect = 4e-64
Identities = 87/416 (20%), Positives = 146/416 (35%), Gaps = 52/416 (12%)
Query: 900 WETRKTESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGLKRQRL 959
WE +T + L VG I TR+GE+LR+ R ++NE W+ D GRF ++ + RL
Sbjct: 1 WEMEETPTTCALCPVGCGITADTRSGELLRIRAREVPEVNEIWICDAGRFGHEWADQNRL 60
Query: 960 LTPFVRNCDGQLVATEWEDALIAVAQKLQTSEVAGVVGSLADAEAMVALKDLLNKLGSED 1019
TP VR +G+LV WE+A +A+ + L+ + V LA + +
Sbjct: 61 KTPLVRK-EGRLVEATWEEAFLALKEGLKEARGEEVGLYLAHDATLEEGLLASELAKALK 119
Query: 1020 LYTEYAFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYL-- 1077
T A+ + +AD L++G +P EAP+ + R+ +
Sbjct: 120 TPHLD----FQGRTAAPASLFPPASLEDLLQADFALVLG-DPTEEAPILHLRLSEFVRDL 174
Query: 1078 ----------------------TNELDVAYIGP------KVDLRYDYEHLGESADLIKQL 1109
+A P K ++ GE +++ L
Sbjct: 175 KPPHRYNHGTPFADLQIKERMPRRTDKMALFAPYRAPLMKWAAIHEVHRPGEEREILLAL 234
Query: 1110 ASGSHPFS------KKLSAAKKPLIVVGADISDGAAVLALVQQLAAKVTCESDVPCDWKV 1163
+ AK P++++GA ++Q A
Sbjct: 235 LGDKEGSEMVAKAKEAWEKAKNPVLILGA---------GVLQDTVAAERARLLAERKGAK 285
Query: 1164 LNILQKAASQVAALDIGYKPGTSAIREKPPKVLFLLGADEGSISRDDVGKDCFIIYQGHH 1223
+ + AA+ +G PG P L+ GK +++ H
Sbjct: 286 VLAMTPAANARGLEAMGVLPGAKGASWDEPGALYAYYGFVPPEEALK-GKRFVVMHLSHL 344
Query: 1224 GDHGASIADAILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPGLAREDWKIIRALSE 1279
A +LP + EK+ VN EGR A G A +++ L+E
Sbjct: 345 HPLAERYAHVVLPAPTFYEKRGHLVNLEGRVLPLSPAPIENGEAEGALQVLALLAE 400
>d2fug34 d.58.1.5 (3:96-246) NADH-quinone oxidoreductase chain 3,
Nqo3, domain 2 {Thermus thermophilus [TaxId: 274]}
Length = 151
Score = 109 bits (272), Expect = 4e-28
Identities = 50/196 (25%), Positives = 74/196 (37%), Gaps = 47/196 (23%)
Query: 703 SEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRFTDIDFSGKSGTY 762
S++ R A+ G++EF L+NHPLDCP CD+GG C+LQD+++ +G + T
Sbjct: 2 SDVVREAQAGMVEFTLLNHPLDCPTCDKGGACELQDRTVEYGLYEKYYQKGPLELPVYTR 61
Query: 763 TRVTRQRSWGLIPSRVFLQSINRHWIGPVAACAMPVMKGWRVKTNSEMTRRAREGVMEFL 822
TR+ H + P
Sbjct: 62 FEFTRRH------------VDKHHPLSP-------------------------------F 78
Query: 823 LVNHPLDCPICDQGGECDLQDQSMAFGNDLGTTGRGSDMQVGTYVEKLFLSELSGNVIDL 882
++ C C C + + L RG +GT ++ S SGN+ D+
Sbjct: 79 VILDRERCIHC---KRCVRYFEEVPGDEVLDFIERGVHTFIGT-MDFGLPSGFSGNITDI 134
Query: 883 CPVGALTSKPYSFTAR 898
CPVGAL F AR
Sbjct: 135 CPVGALLDLTARFRAR 150
>d3c8ya2 d.15.4.2 (A:1-126) Fe-only hydrogenase, N-terminal domain
{Clostridium pasteurianum [TaxId: 1501]}
Length = 126
Score = 105 bits (263), Expect = 3e-27
Identities = 19/120 (15%), Positives = 36/120 (30%), Gaps = 36/120 (30%)
Query: 667 VFIDDKKVMVDPGTTVLQ------------------------------------PVAACA 690
+ I+ + D TT+L+ V AC
Sbjct: 4 IIINGVQFNTDEDTTILKFARDNNIDISALCFLNNCNNDINKCEICTVEVEGTGLVTACD 63
Query: 691 MPVMKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQSMAFGSDRSRF 750
+ G + TNS+ + + LL H C C++ C+ + + + S+
Sbjct: 64 TLIEDGMIINTNSDAVNEKIKSRISQLLDIHEFKCGPCNRRENCEFLKLVIKYKARASKP 123
Score = 95.0 bits (236), Expect = 1e-23
Identities = 14/66 (21%), Positives = 24/66 (36%)
Query: 786 HWIGPVAACAMPVMKGWRVKTNSEMTRRAREGVMEFLLVNHPLDCPICDQGGECDLQDQS 845
G V AC + G + TNS+ + + LL H C C++ C+
Sbjct: 54 EGTGLVTACDTLIEDGMIINTNSDAVNEKIKSRISQLLDIHEFKCGPCNRRENCEFLKLV 113
Query: 846 MAFGND 851
+ +
Sbjct: 114 IKYKAR 119
>d2iv2x2 c.81.1.1 (X:1-564) Formate dehydrogenase H {Escherichia coli
[TaxId: 562]}
Length = 564
Score = 91.6 bits (226), Expect = 2e-19
Identities = 39/190 (20%), Positives = 68/190 (35%), Gaps = 19/190 (10%)
Query: 903 RKTESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGL-----KRQ 957
+K +V A G I + G+++R N+ L KG + +D +
Sbjct: 2 KKVVTVCPYCASGCKINLVVDNGKIVRAEAA-QGKTNQGTLCLKGYYGWDFINDTQILTP 60
Query: 958 RLLTPFVR-NCDGQLVATEWEDALIAVAQKLQT-------SEVAGVVGS--LADAEAMVA 1007
RL TP +R G+L W++AL VA++L + S + V
Sbjct: 61 RLKTPMIRRQRGGKLEPVSWDEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETNYVM 120
Query: 1008 LKDLLNKLGSEDLYTEYAF---PLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFE 1064
K +G+ ++ P N ++N I + DL+ + G NP
Sbjct: 121 QKFARAVIGTNNVDCCARVCHGPSVAGLHQSVGNGAMSNAINEIDNTDLVFVFGYNPADS 180
Query: 1065 APLFNARIRK 1074
P+ +
Sbjct: 181 HPIVANHVIN 190
Score = 58.9 bits (141), Expect = 3e-09
Identities = 19/72 (26%), Positives = 30/72 (41%)
Query: 1208 RDDVGKDCFIIYQGHHGDHGASIADAILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPGLA 1267
R +I Q AS AD ILP ++ E + + + Q+ AV P
Sbjct: 416 RKAFEDLELVIVQDIFMTKTASAADVILPSTSWGEHEGVFTAADRGFQRFFKAVEPKWDL 475
Query: 1268 REDWKIIRALSE 1279
+ DW+II ++
Sbjct: 476 KTDWQIISEIAT 487
>d1ogya2 c.81.1.1 (A:12-681) Periplasmic nitrate reductase alpha chain
{Rhodobacter sphaeroides [TaxId: 1063]}
Length = 670
Score = 88.9 bits (219), Expect = 2e-18
Identities = 38/183 (20%), Positives = 69/183 (37%), Gaps = 18/183 (9%)
Query: 913 AVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGLK-RQRLLTPFVR------ 965
G ++V TR G+V+ ++N KG F + RL TP +R
Sbjct: 12 GTGCGVMVGTRDGQVVATHGDTQAEVNRGLNCVKGYFLSKIMYGEDRLTTPLLRMKDGVY 71
Query: 966 NCDGQLVATEWEDALIAVAQKLQT------SEVAGVVGS--LADAEAMVALKDLLNKLGS 1017
+ +G+ W++A +A + + E G+ GS E A K + S
Sbjct: 72 HKEGEFAPVSWDEAFDVMAAQAKLVLKEKAPEAVGMFGSGQWTIWEGYAASKLMRAGFRS 131
Query: 1018 EDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEE---ADLILLIGTNPRFEAPLFNARIRK 1074
+L + A T + ++ + ++ AD +L G+N P+ +R+
Sbjct: 132 NNLDPNARHCMASAATAFMRTFGMDEPMGCYDDFEAADAFVLWGSNMAEMHPILWSRLTD 191
Query: 1075 GYL 1077
L
Sbjct: 192 RRL 194
Score = 62.4 bits (150), Expect = 3e-10
Identities = 20/72 (27%), Positives = 28/72 (38%)
Query: 1208 RDDVGKDCFIIYQGHHGDHGASIADAILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPGLA 1267
+ FI+ + AD +LP A + EK+ Y N E R V PG A
Sbjct: 459 PGYRNPENFIVVSDAYPTVTGRAADLVLPAAMWVEKEGAYGNAERRTHFWHQLVEAPGEA 518
Query: 1268 REDWKIIRALSE 1279
R D + S+
Sbjct: 519 RSDLWQLMEFSK 530
>d1h0ha2 c.81.1.1 (A:1-812) Tungsten containing formate dehydrogenase,
large subunit {Desulfovibrio gigas [TaxId: 879]}
Length = 812
Score = 78.4 bits (192), Expect = 4e-15
Identities = 39/192 (20%), Positives = 69/192 (35%), Gaps = 26/192 (13%)
Query: 896 TARPWETRKTESVDVLDAVGSNIIVST--RTGEVLRVLPRLNEDINEEWLADKGRFAYDG 953
+ + ++T SV +VG +IV T +T + V + INE L KG +
Sbjct: 4 ALKTVDAKQTTSVCCYCSVGCGLIVHTDKKTNRAINVEGDPDHPINEGSLCAKGASTWQL 63
Query: 954 LKRQ-RLLTPFVR-NCDGQLVATEWEDALIAVAQKLQ-------------------TSEV 992
+ + R P R Q W+ L +A+++ +
Sbjct: 64 AENERRPANPLYRAPGSDQWEEKSWDWMLDTIAERVAKTREATFVTKNAKGQVVNRCDGI 123
Query: 993 AGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANY---LLNNKIAGAE 1049
A V + D E + L LG + + L +Y + N +
Sbjct: 124 ASVGSAAMDNEECWIYQAWLRSLGLFYIEHQARICHSATVAALAESYGRGAMTNHWIDLK 183
Query: 1050 EADLILLIGTNP 1061
+D+IL++G+NP
Sbjct: 184 NSDVILMMGSNP 195
Score = 57.6 bits (138), Expect = 1e-08
Identities = 21/122 (17%), Positives = 39/122 (31%), Gaps = 19/122 (15%)
Query: 1187 AIREKPPKVLFLLGAD------EGSISRDDVGKDCFIIYQGHHGDHGASIADA------- 1233
+ + K F G + + +R+ + K +++ + S
Sbjct: 503 DMFQGKIKGFFAWGQNPACSGANSNKTREALTKLDWMVNVNIFDNETGSFWRGPDMDPKK 562
Query: 1234 ------ILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPGLAREDWKIIRALSEGVSSNLSS 1287
LP A EK+ + N+ Q P A D +I L++ V L+
Sbjct: 563 IKTEVFFLPCAVAIEKEGSISNSGRWMQWRYVGPEPRKNAIPDGDLIVELAKRVQKLLAK 622
Query: 1288 EP 1289
P
Sbjct: 623 TP 624
>d2jioa2 c.81.1.1 (A:4-600) Periplasmic nitrate reductase alpha chain
{Desulfovibrio desulfuricans [TaxId: 876]}
Length = 597
Score = 74.3 bits (181), Expect = 5e-14
Identities = 36/189 (19%), Positives = 69/189 (36%), Gaps = 16/189 (8%)
Query: 898 RPWETRKTESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGLK-R 956
RP + + V G ++V + G+ + + + N L KG L +
Sbjct: 1 RP--EKWVKGVCRYCGTGCGVLVGVKDGKAVAIQGD-PNNHNAGLLCLKGSLLIPVLNSK 57
Query: 957 QRLLTPFVR-NCDGQLVATEWEDALIAVAQKLQT------SEVAGVVGS--LADAEAMVA 1007
+R+ P VR + G+L W++AL +A + ++ GS E+ VA
Sbjct: 58 ERVTQPLVRRHKGGKLEPVSWDEALDLMASRFRSSIDMYGPNSVAWYGSGQCLTEESYVA 117
Query: 1008 LKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEE---ADLILLIGTNPRFE 1064
K G+ ++ + A ++ + + + A +IG+N
Sbjct: 118 NKIFKGGFGTNNVDGNPRLCMASAVGGYVTSFGKDEPMGTYADIDQATCFFIIGSNTSEA 177
Query: 1065 APLFNARIR 1073
P+ RI
Sbjct: 178 HPVLFRRIA 186
Score = 52.0 bits (123), Expect = 4e-07
Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 1213 KDCFIIYQGHHGDHG-ASIADAILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPGLAREDW 1271
+ FI+ D AD +LP A + E+ Y E R T AV PPG R
Sbjct: 433 PESFIVCIEAFPDAVTLEYADLVLPPAFWCERDGVYGCGERRYSLTEKAVDPPGQCRPTV 492
Query: 1272 KIIRALSE 1279
+ +
Sbjct: 493 NTLVEFAR 500
>d1g8ka2 c.81.1.1 (A:4-682) Arsenite oxidase large subunit
{Alcaligenes faecalis [TaxId: 511]}
Length = 679
Score = 69.0 bits (167), Expect = 3e-12
Identities = 17/67 (25%), Positives = 26/67 (38%)
Query: 1213 KDCFIIYQGHHGDHGASIADAILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPGLAREDWK 1272
F+ + A A +LP A E T +N E R + + + PPG A D
Sbjct: 503 GGLFVTSINLYPTKLAEAAHLMLPAAHPGEMNLTSMNGERRIRLSEKFMDPPGTAMADCL 562
Query: 1273 IIRALSE 1279
I ++
Sbjct: 563 IAARIAN 569
Score = 59.8 bits (143), Expect = 2e-09
Identities = 33/219 (15%), Positives = 63/219 (28%), Gaps = 21/219 (9%)
Query: 879 VIDLCPVGALTSKPYSFTARPWETRKTESVDVLDAVGSNIIVSTRTGEVLRVLPRLNEDI 938
G + + + +V + A+ + + + V+P +
Sbjct: 31 KWPELEEGGRAPEQNALGLDFRKQLPPLAVTLTPAMTNVVTEHDGARYDIMVVPDKACVV 90
Query: 939 NEEWLADKGRFAYD------GLKRQRLLTPFVRNCDGQLVATEWEDALIAVAQKLQT--- 989
N + +G G ++RL P + + V T W+ A+ A ++
Sbjct: 91 NSGLSSTRGGKMASYMYTPTGDGKERLSAPRLYA-ADEWVDTTWDHAMALYAGLIKKTLD 149
Query: 990 ----SEVAGVVGSLADA-----EAMVALKDLLNKLGSEDLYTEYA--FPLEGAGTDLRAN 1038
V A K + + + + + + E T
Sbjct: 150 KDGPQGVFFSCFDHGGAGGGFENTWGTGKLMFSAIQTPMVRIHNRPAYNSECHATREMGI 209
Query: 1039 YLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYL 1077
LNN A+ AD+I IG NP + L
Sbjct: 210 GELNNAYEDAQLADVIWSIGNNPYESQTNYFLNHWLPNL 248
>d1kqfa2 c.81.1.1 (A:34-850) Formate dehydrogenase N, alpha subunit
{Escherichia coli [TaxId: 562]}
Length = 817
Score = 59.5 bits (143), Expect = 2e-09
Identities = 29/226 (12%), Positives = 70/226 (30%), Gaps = 34/226 (15%)
Query: 897 ARPWE---TRKTESVDVLDAVGSNIIVSTR-------TGEVLRVLPRLNEDINEEWLADK 946
AR ++ ++ + +VG +++ + + + + ++ L K
Sbjct: 2 ARNYKLLRAKEIRNTCTYCSVGCGLLMYSLGDGAKNAREAIYHIEGDPDHPVSRGALCPK 61
Query: 947 GRFAYDGLK-RQRLLTPFVR-NCDGQLVATEWEDALIAVAQKLQT--------------- 989
G D + RL P R + WE+A +A+ ++
Sbjct: 62 GAGLLDYVNSENRLRYPEYRAPGSDKWQRISWEEAFSRIAKLMKADRDANFIEKNEQGVT 121
Query: 990 ----SEVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANY---LLN 1042
+ S A E + + LG + + L + +
Sbjct: 122 VNRWLSTGMLCASGASNETGMLTQKFARSLGMLAVDNQARVCHGPTVASLAPTFGRGAMT 181
Query: 1043 NKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 1088
N + A++++++G N P+ + N+ + + P
Sbjct: 182 NHWVDIKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIVVDP 227
Score = 53.3 bits (127), Expect = 2e-07
Identities = 11/49 (22%), Positives = 18/49 (36%)
Query: 1231 ADAILPGAAYTEKQSTYVNTEGRAQQTLTAVTPPGLAREDWKIIRALSE 1279
LP + E+ + N+ Q PG AR D +I+ +
Sbjct: 577 EVFRLPSTCFAEEDGSIANSGRWLQWHWKGQDAPGEARNDGEILAGIYH 625
>d1y5ia2 c.81.1.1 (A:1-1074) Respiratory nitrate reductase 1 alpha
chain {Escherichia coli [TaxId: 562]}
Length = 1074
Score = 52.1 bits (124), Expect = 4e-07
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 1212 GKDCFIIYQGHHGDHGASIADAILPGAAYTEKQS-TYVNTEGRAQQTLTAVTPPGLARED 1270
GK ++ +D ILP A + EK + AV P A+ D
Sbjct: 763 GKLDLVVTLDFRLSSTCLYSDIILPTATWYEKDDMNTSDMHPFIHPLSAAVDPAWEAKSD 822
Query: 1271 WKIIRALSE 1279
W+I +A+++
Sbjct: 823 WEIYKAIAK 831
Score = 42.5 bits (99), Expect = 4e-04
Identities = 32/241 (13%), Positives = 58/241 (24%), Gaps = 64/241 (26%)
Query: 898 RPWET--RKTESVD--------VLDAVGSNIIVSTRTGEVLRVLPRLNEDINEEWLAD-- 945
R WE R+ D V + + + G V + + L +
Sbjct: 29 RDWEDGYRQRWQHDKIVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHE 88
Query: 946 -----KGRFAYDGLKR-QRLLTPFVR---------------------------------- 965
+G L RL P +R
Sbjct: 89 PRGCPRGASYSWYLYSANRLKYPMMRKRLMKMWREAKALHSDPVEAWASIIEDADKAKSF 148
Query: 966 ---NCDGQLVATEWEDALIAVAQKLQ-------TSEVAGVVGSLADAE-AMVALKDLLNK 1014
G V + W++ +A VAG A + + + L+
Sbjct: 149 KQARGRGGFVRSSWQEVNELIAASNVYTIKNYGPDRVAGFSPIPAMSMVSYASGARYLSL 208
Query: 1015 LGSEDL-YTEYAFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIR 1073
+G L + ++ L A + A + I+ G+N
Sbjct: 209 IGGTCLSFYDWYCDLPPASPQTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFT 268
Query: 1074 K 1074
+
Sbjct: 269 E 269
>d1vlfm2 c.81.1.1 (M:1-728) Transhydroxylase alpha subunit, AthL
{Pelobacter acidigallici [TaxId: 35816]}
Length = 728
Score = 47.8 bits (112), Expect = 8e-06
Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 14/81 (17%)
Query: 1213 KDCFIIYQGHHGDHGASIADAILPGAAYTEK--------------QSTYVNTEGRAQQTL 1258
F++ Q + AD ILP E+ + +
Sbjct: 518 SLEFVVSQSIWFEGEVPFADIILPACTNFERWDISEFANCSGYIPDNYQLCNHRVISLQA 577
Query: 1259 TAVTPPGLAREDWKIIRALSE 1279
+ P G + D++I R ++
Sbjct: 578 KCIEPVGESMSDYEIYRLFAK 598
Score = 33.2 bits (74), Expect = 0.26
Identities = 13/116 (11%), Positives = 30/116 (25%), Gaps = 40/116 (34%)
Query: 913 AVGSNIIVSTRTGEVLRVLPRLNED------------------INEEWLADKGRFAYDGL 954
+ G + V + G+++R+ P +D + +A +
Sbjct: 11 STGGPVFVYVKDGKIIRMTPMDFDDAVDAPSWKIEARGKTFTPPRKTSIAPYTAGFKSMI 70
Query: 955 K-RQRLLTPFVR---------------------NCDGQLVATEWEDALIAVAQKLQ 988
R+ P R + W++A V ++
Sbjct: 71 YSDLRIPYPMKRKSFDPNGERNPQLRGAGLSKQDPWSDYERISWDEATDIVVAEIN 126
>d1eu1a2 c.81.1.1 (A:4-625) Dimethylsulfoxide reductase (DMSO
reductase) {Rhodobacter sphaeroides [TaxId: 1063]}
Length = 622
Score = 43.5 bits (101), Expect = 2e-04
Identities = 16/83 (19%), Positives = 25/83 (30%), Gaps = 17/83 (20%)
Query: 920 VSTRTGEVLRVLPRLNEDINEEWLADKGRFAYDGLKRQRLLTPFVRNC------------ 967
G + P + L Y R+ P VR
Sbjct: 16 ARVENGRAVAFEPWDKDPAPSHQLPGVLDSIYS---PTRIKYPMVRREFLEKGVNADRST 72
Query: 968 --DGQLVATEWEDALIAVAQKLQ 988
+G V W++AL VA++L+
Sbjct: 73 RGNGDFVRVTWDEALDLVARELK 95
Score = 42.4 bits (98), Expect = 4e-04
Identities = 18/67 (26%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
Query: 1216 FIIYQGHHGDHGASIADAILPGAAYTEKQ---STYVNTEGRAQQTLTAVTPPGLAREDWK 1272
I Q A AD +LP E+ S + V P AR D+
Sbjct: 451 TFIVQDFQWTATARHADIVLPATTSYERNDIESVGDYSNRAILAMKKVVDPLYEARSDYD 510
Query: 1273 IIRALSE 1279
I AL+E
Sbjct: 511 IFAALAE 517
>d1tmoa2 c.81.1.1 (A:5-631) Trimethylamine N-oxide reductase
{Shewanella massilia [TaxId: 76854]}
Length = 627
Score = 42.0 bits (97), Expect = 5e-04
Identities = 10/75 (13%), Positives = 21/75 (28%), Gaps = 3/75 (4%)
Query: 1208 RDDVGKDCFIIYQGHHGDHGASIADAILPGAAYTEKQSTYV---NTEGRAQQTLTAVTPP 1264
+ K ++ + +D +LP E+ V V P
Sbjct: 451 KQAFHKLECVVTVDVNWTATCRFSDIVLPACTTYERNDIDVYGAYANRGILAMQKMVEPL 510
Query: 1265 GLAREDWKIIRALSE 1279
+ D++I +
Sbjct: 511 FDSLSDFEIFTRFAA 525
Score = 33.1 bits (74), Expect = 0.26
Identities = 22/128 (17%), Positives = 38/128 (29%), Gaps = 27/128 (21%)
Query: 920 VSTRTGEVLRVLPR-LNEDINEEWLADKGRFAYDGLKRQRLLTPFVR------------- 965
+ + G + V P L++ + +G Y+ R+ P VR
Sbjct: 17 MKRKNGVIAEVKPFDLDKYPTDMINGIRGM-VYN---PSRVRYPMVRLDFLLKGHKSNTH 72
Query: 966 -NCDGQLVATEWEDALIAVAQKLQT--------SEVAGVVGSLADAEAMVALKDLLNKLG 1016
D + V W+ AL L AG G A + + + +G
Sbjct: 73 QRGDFRFVRVTWDKALTLFKHSLDEVQTQYGPSGLHAGQTGWRATGQLHSSTSHMQRAVG 132
Query: 1017 SEDLYTEY 1024
Y +
Sbjct: 133 MHGNYVKK 140
>d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain
{Clostridium pasteurianum [TaxId: 1501]}
Length = 83
Score = 37.9 bits (87), Expect = 7e-04
Identities = 16/62 (25%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Query: 833 CDQGGECDLQDQSMAFGNDLGTTGRGSDMQVGTYVEKLFLS---ELSGNVIDLCPVGALT 889
C G C + + +G EK F L G I CPV AL+
Sbjct: 21 CLLCGRCVNACGKNTETYAMKFLNKNGKTIIGAEDEKCFDDTNCLLCGQCIIACPVAALS 80
Query: 890 SK 891
K
Sbjct: 81 EK 82
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 33.2 bits (75), Expect = 0.17
Identities = 22/135 (16%), Positives = 58/135 (42%), Gaps = 5/135 (3%)
Query: 20 ELREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQLNNNQKAQDE---IQTLLA 76
+L++ Y + +A++ +QT L S+ + + QT ++ + E ++ A
Sbjct: 159 DLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQA 218
Query: 77 KSASIKTELREFYQTQLNNN--VKEKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQL 134
+ + R+ Q +E LK+ ++++ + L +E ++ ++ + L
Sbjct: 219 SAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLL 278
Query: 135 KQISENEFKQKEKTI 149
K+ + E + + I
Sbjct: 279 KEGFQKESRIMKNEI 293
Score = 31.6 bits (71), Expect = 0.62
Identities = 30/207 (14%), Positives = 72/207 (34%), Gaps = 7/207 (3%)
Query: 25 YQTQLNNNQKAQDEIQTLLAKSASIK---TELREFYQTQLNNNQKAQDEIQTLLAKSASI 81
+Q +L + + + + AS L+ + +
Sbjct: 97 FQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQK 156
Query: 82 KTELREFYQTQLNNNVKEKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQISENE 141
+L++ Y + + +E ++ ++ Q ++T+ E + + + E
Sbjct: 157 LQDLKKKYYEEPRKG--IQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAE 214
Query: 142 FKQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAEL-TQRDIKLKE 200
Q ++ ++ +Q+ E+ K E E + +L E +KL+E
Sbjct: 215 SAQASAKMLHEMQRKNEQMMEQK-ERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQE 273
Query: 201 TNHLLKEESKKRELMAKKVESVMQSQL 227
LLKE +K + K +Q+++
Sbjct: 274 QEQLLKEGFQKESRIMKNEIQDLQTKM 300
Score = 28.9 bits (64), Expect = 4.4
Identities = 38/210 (18%), Positives = 82/210 (39%), Gaps = 18/210 (8%)
Query: 420 KIESLERNLQTETQRSRKLEEELQDTRQTCEEVVRKEV--SIVTVTLFLERLRSSHSKRS 477
+ + + Q + S + LQ EE V+ + LF+++L+ K
Sbjct: 106 EKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYY 165
Query: 478 KNADSLVRLQKAQDEIQTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQLDSAELTL 537
+ + +A++ +QT L S+ + + QT + +++ + + A +
Sbjct: 166 EEPR---KGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKM 222
Query: 538 HREFQQKEKTIVENAAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAEL-TQRDIK 596
E Q+K + ++E + ++ K E E + +L E +K
Sbjct: 223 LHEMQRKNEQMMEQKERSYQE------------HLKQLTEKMENDRVQLLKEQERTLALK 270
Query: 597 LKETNHLLKEESKKRELMAKKVESVMQSQL 626
L+E LLKE +K + K +Q+++
Sbjct: 271 LQEQEQLLKEGFQKESRIMKNEIQDLQTKM 300
>d1ytla1 c.31.1.6 (A:17-174) Acetyl-CoA decarbonylase/synthase complex
epsilon subunit 2, ACDE2 {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 158
Score = 32.3 bits (73), Expect = 0.20
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Query: 1106 IKQLASGSHPFSKKLSAAKKPLIVVGADISD-GAAVLALVQQLAAKVTC 1153
K +A + AK+PL++VG D++D + + V
Sbjct: 9 GKPVA-------NMIKKAKRPLLIVGPDMTDEMFERVKKFVEKDITVVA 50
>d2a5yb1 a.4.5.80 (B:386-543) Cell death protein 4, CED-4
{Caenorhabditis elegans [TaxId: 6239]}
Length = 158
Score = 31.6 bits (71), Expect = 0.28
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 205 LKEESKKRELMAKKVESVMQSQLQQAIHMITSDVTHLHTSKESLATRQPSEQSLIDSTTD 264
LK SK+ L++ K V+ ++ IHM V T ++ EQ L++ +
Sbjct: 49 LKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTIANGISIL---EQRLLE-IGN 104
Query: 265 TNCPVTQQYVPSSNQQYAPSS 285
N V ++++PS Q++ SS
Sbjct: 105 NNVSVPERHIPSHFQKFRRSS 125
>d1mw9x_ e.10.1.1 (X:) DNA topoisomerase I, 67K N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 591
Score = 32.6 bits (73), Expect = 0.41
Identities = 16/94 (17%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
Query: 71 IQTLLAKSASIKTELREFYQTQLNNNVKEKLKEFQTQLDSAELTLHREFQQKEKTIVENA 130
I T+ ++ E R FY ++ V ++L+E +L + + T + + + +
Sbjct: 500 ISTIQ-DRGYVRVENRRFYAEKMGEIVTDRLEENFRELMNYDFT--AQMENNLDQVANHE 556
Query: 131 AKQLKQISENEFKQKEKTIVENAAKQLKQISEKP 164
A+ + + F ++ A K ++ +P
Sbjct: 557 AEWKAVL--DHFFSDFTQQLDKAEKDPEEGGMRP 588
>d1t9ba1 c.31.1.3 (A:290-460) Acetohydroxyacid synthase catalytic
subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 171
Score = 31.2 bits (69), Expect = 0.48
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 1118 KKLSAAKKPLIVVGADISDGAAVLALVQQLAAKVTC 1153
++ AKKP++ VGA I + A L+++L+ +
Sbjct: 5 DLINLAKKPVLYVGAGILNHADGPRLLKELSDRAQI 40
>d1ovma1 c.31.1.3 (A:181-341) Indole-3-pyruvate decarboxylase
{Enterobacter cloacae [TaxId: 550]}
Length = 161
Score = 30.9 bits (69), Expect = 0.51
Identities = 15/121 (12%), Positives = 31/121 (25%), Gaps = 4/121 (3%)
Query: 1118 KKLSAAKKPLIVVGADISDGAAVLALVQQLAAKVTCE-SDVPCDWKVLNILQKAASQVAA 1176
KL+ +K+ ++ + AL Q+ +V + + + + Q +
Sbjct: 24 NKLAMSKRTALLADFLVLRHGLKHAL-QKWVKEVPMAHATMLMGKGIFDERQAGFYGTYS 82
Query: 1177 LDIGYKPGTSAIREKPPKVLFLLGADEGSISRDDVGKDCFIIYQGHHGDHGASIADAILP 1236
AI + +G H A + D
Sbjct: 83 GSASTGAVKEAIEG--ADTVLCVGTRFTDTLTAGFTHQLTPAQTIEVQPHAARVGDVWFT 140
Query: 1237 G 1237
G
Sbjct: 141 G 141
>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 268
Score = 30.8 bits (69), Expect = 0.90
Identities = 29/196 (14%), Positives = 59/196 (30%), Gaps = 14/196 (7%)
Query: 436 RKLEEELQDTRQTCEEVVRKEVSIVTVTLFLERLRSSHSKRSKN-ADSLVRLQKAQDEIQ 494
EE+ ++ + I L SK K L + +
Sbjct: 19 GVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMS 78
Query: 495 TLLAKSASIKTELREFYQ---TQLNNNVKEKLKEFQTQLDSAELTLHREFQQKEKTIVEN 551
+ L + + + EL + TQL + + + +F+ + LTL FQ
Sbjct: 79 STLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAA 138
Query: 552 AAKQLKQISEKPGATKLMLDFKAKCEVYEAENKKLKAELTQRDIKLKETNHLLKEESKKR 611
+ + ++ YE + Q + L + KK+
Sbjct: 139 INRYSRLSKKRE----------NDKVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKK 188
Query: 612 ELMAKKVESVMQSQLQ 627
+ + + MQ+Q+
Sbjct: 189 IALLEPLLGYMQAQIS 204
>d1ozha1 c.31.1.3 (A:188-366) Catabolic acetolactate synthase
{Klebsiella pneumoniae [TaxId: 573]}
Length = 179
Score = 30.3 bits (67), Expect = 1.0
Identities = 9/46 (19%), Positives = 16/46 (34%)
Query: 1118 KKLSAAKKPLIVVGADISDGAAVLALVQQLAAKVTCESDVPCDWKV 1163
K ++ AK P+ ++G S AL + L +
Sbjct: 15 KLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTSTYQAAGA 60
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 107
Score = 27.8 bits (62), Expect = 3.3
Identities = 19/112 (16%), Positives = 47/112 (41%), Gaps = 10/112 (8%)
Query: 26 QTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTEL 85
Q QL Q+ Q + Q + + +++ ++ E + ++ A D + + I+
Sbjct: 4 QHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAK 63
Query: 86 REFYQTQLNNNVKEKLKEFQTQLDSAELTLHREFQQKEKTIVENAAKQLKQI 137
E L ++EKL+ Q + T+ R+ ++ K + + +++
Sbjct: 64 DE-----LTEELQEKLETLQLREK----TIERQEERVMKKL-QEMQVNIQEA 105
>d1lara1 c.45.1.2 (A:1307-1623) RPTP Lar {Human (Homo sapiens)
[TaxId: 9606]}
Length = 317
Score = 29.4 bits (65), Expect = 3.4
Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 11/112 (9%)
Query: 279 QQYAPSSNQQYSIPTSNINQQYSMFSADSTHMNIVER----DIPNSADDMRKY------I 328
+ P + S + F + ++ DI MR
Sbjct: 202 KACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQT 261
Query: 329 EMQYSMFSADSTHMNIVERDIPNSADDMRKYIEMLLEKPPGNPVSDLEAEVK 380
E QY +F ++ A ++ +I+ L + PPG V+ +E E K
Sbjct: 262 EDQY-VFIHEALLEAATCGHTEVPARNLYAHIQKLGQVPPGESVTAMELEFK 312
>d1q6za1 c.31.1.3 (A:182-341) Benzoylformate decarboxylase
{Pseudomonas putida [TaxId: 303]}
Length = 160
Score = 28.7 bits (63), Expect = 3.5
Identities = 18/112 (16%), Positives = 34/112 (30%), Gaps = 3/112 (2%)
Query: 1118 KKLSAAKKPLIVVGADISDGAAVLALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAAL 1177
K L++A P IV+G D+ A A LA ++ V + +
Sbjct: 14 KALNSASNPAIVLGPDVDAANAN-ADCVMLAERLKAPVWVAPSAPRCPFPTRHPCFRGLM 72
Query: 1178 DIGYKPGTSAIREKPPKVLFLLGADEGSISRDDVGKDCFIIYQGHHGDHGAS 1229
G + + + ++GA + D G+ +
Sbjct: 73 PAGIAAISQLLEGHDV--VLVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPL 122
>d2ihta1 c.31.1.3 (A:198-374) Carboxyethylarginine synthase
{Streptomyces clavuligerus [TaxId: 1901]}
Length = 177
Score = 28.4 bits (62), Expect = 3.9
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 1118 KKLSAAKKPLIVVGADISDGAA---VLALVQQLAAKVTCESDVPCDW 1161
L+ AK P++VVGA A + AL ++L V
Sbjct: 14 ALLAEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYIAKGVL 60
>d1m5q1_ b.38.1.1 (1:) Sm-Like archaeal protein Smap3 {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 127
Score = 27.8 bits (62), Expect = 3.9
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 9/61 (14%)
Query: 309 HMNIVERDIPNSADDMRKYIEMQYSMFSADSTHMNIVERDIPNSADDMRKYIEMLLEKPP 368
+NIV + N A + + + Y IV D DMR++ + + P
Sbjct: 33 QLNIVLANASNKAGEKFNRVFIMYR---------YIVHIDSTERRIDMREFAKQAEKIFP 83
Query: 369 G 369
G
Sbjct: 84 G 84
>d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic
subunit {Thale cress (Arabidopsis thaliana), chloroplast
[TaxId: 3702]}
Length = 179
Score = 28.4 bits (62), Expect = 4.1
Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 7/60 (11%)
Query: 1102 SADLIKQLASGSHPFSKKLSAAKKPLIVVGADISDGAAVLALVQQLAAKVTCESDVPCDW 1161
++Q+ + +S +KKP++ VG + + L +L + +
Sbjct: 5 EDSHLEQIV-------RLISESKKPVLYVGGGCLNSSDELGRFVELTGIPVASTLMGLGS 57
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 196
Score = 28.2 bits (62), Expect = 4.9
Identities = 21/150 (14%), Positives = 52/150 (34%), Gaps = 3/150 (2%)
Query: 404 LYTKTVRSVTLKISKEKIESLERNLQTETQRSRKLEEELQDTRQTCEE-VVRKEVSIVTV 462
L+ + + V + + SL+ + T KL+ E++ ++ ++ + +
Sbjct: 31 LHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGIHDTNKQAQAENSR 90
Query: 463 TLFLERLRSSHSKRSKNADSLVRLQKAQDEIQTLLAKSASIKTELREFY--QTQLNNNVK 520
FL+ ++ S + K Q I A ++ + + Q +
Sbjct: 91 QRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEATEDEVEAAISDVGGQQIFSQALLN 150
Query: 521 EKLKEFQTQLDSAELTLHREFQQKEKTIVE 550
+ + H+E + EK++ E
Sbjct: 151 ANRRGEAKTALAEVQARHQELLKLEKSMAE 180
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 288
Score = 28.4 bits (63), Expect = 5.3
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 4/74 (5%)
Query: 313 VERDIPNSADDMRKYIEMQYSMFSADSTHMNIVERDIPNSADDMRKYIEMLL----EKPP 368
V I I Q+S + + +V+ P A + E ++ P
Sbjct: 179 VTDVILRRMHAYVHCIVPQFSQTDINFQRVPVVDTSNPFIARWIPTADESVVVIRFRNPR 238
Query: 369 GNPVSDLEAEVKDS 382
G L + + S
Sbjct: 239 GIDFPYLTSMIHGS 252
>d1n7oa3 b.30.5.2 (A:541-814) Hyaluronate lyase {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 274
Score = 28.3 bits (63), Expect = 5.7
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 1207 SRDDVGKDCFIIYQGHHGDHGASIADAILPGAAYTE 1242
S +V + I Q H +G S ++P
Sbjct: 231 SDKEVENEFLTISQAH-KQNGDSYGYMLIPNVDRAT 265
>d2djia1 c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus viridans
[TaxId: 1377]}
Length = 177
Score = 28.1 bits (61), Expect = 5.9
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 7/46 (15%)
Query: 1096 YEHLGESADLIKQLASGSHPFSKKLSAAKKPLIVVGADISDGAAVL 1141
Y + +A I + L+ +K+P+I G +
Sbjct: 1 YAPIAPAAQDIDAAV-------ELLNNSKRPVIYAGIGTMGHGPAV 39
>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas
mobilis [TaxId: 542]}
Length = 175
Score = 27.9 bits (61), Expect = 6.3
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 1118 KKLSAAKKPLIVVGADISDGAAVLALVQQ 1146
K ++ K ++VG+ + A A V+
Sbjct: 17 KFIANRDKVAVLVGSKLRAAGAEEAAVKF 45
>d2ji7a1 c.31.1.3 (A:195-369) Oxalyl-CoA decarboxylase {Oxalobacter
formigenes [TaxId: 847]}
Length = 175
Score = 27.3 bits (59), Expect = 8.5
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 7/38 (18%)
Query: 1102 SADLIKQLASGSHPFSKKLSAAKKPLIVVGADISDGAA 1139
+ D I + A + AK+P+I++G +
Sbjct: 5 AEDAIARAA-------DLIKNAKRPVIMLGKGAAYAQC 35
>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 237
Score = 27.8 bits (61), Expect = 8.9
Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 4/108 (3%)
Query: 5 DEIQTLLAKSASIKTELREFYQTQLNNNQKAQDEIQTLLAKSASIKTELREFYQTQLNNN 64
D +Q L K + + +L + D + K ELR+ + +
Sbjct: 131 DPLQNLHDKDLREIQSALQHHLKKLEGRRLDFDYKKKRQGKIP--DEELRQALEKFDESK 188
Query: 65 QKAQDEIQTLLAKSASIKTELREFYQTQLN--NNVKEKLKEFQTQLDS 110
+ A+ + LL ++L Q QL + L++ +L+
Sbjct: 189 EIAESSMFNLLEMDIEQVSQLSALVQAQLEYHKQAVQILQQVTVRLEE 236
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.128 0.353
Gapped
Lambda K H
0.267 0.0482 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,437,318
Number of extensions: 202804
Number of successful extensions: 686
Number of sequences better than 10.0: 1
Number of HSP's gapped: 655
Number of HSP's successfully gapped: 91
Length of query: 1334
Length of database: 2,407,596
Length adjustment: 96
Effective length of query: 1238
Effective length of database: 1,089,516
Effective search space: 1348820808
Effective search space used: 1348820808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.1 bits)