BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11936
(548 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 114/242 (47%), Gaps = 40/242 (16%)
Query: 152 FSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN---IDILYC 208
FS++ L L + RRYG+ GPNG GK+TL+R IA+ + P +Y
Sbjct: 441 FSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYV 500
Query: 209 EQEVVADDLTAVESVLKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGADSA 268
E ++ D + SVL DF E KE ++
Sbjct: 501 EHDI--DGTHSDTSVL-------------------DFVFESGVGTKEAIKDK-------- 531
Query: 269 EPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAV 328
L GF+ M SGGW+M+++LARA+ +LLLDEPTNHLD V
Sbjct: 532 -------LIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNV 584
Query: 329 IWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF-KKMYAQKSKE 387
WL NYL T + +SHD FLDNVC II+ + KL YKGN++ F KK A K+ E
Sbjct: 585 AWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYE 644
Query: 388 RM 389
+
Sbjct: 645 EL 646
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 43/69 (62%)
Query: 291 KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQS 350
+ SGG ++++ LA + P L++LDEPTN+LD +++ L L+ ++ ++I++H
Sbjct: 900 RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAE 959
Query: 351 FLDNVCNEI 359
F N+ E+
Sbjct: 960 FTKNLTEEV 968
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 147 IKVENFSISAKGND--LFVNANLLIANGRRYGLVGPNGHGKTTLLRHI------ASRDLK 198
+KV N G + N + R ++GPNG GK+TL+ + S ++
Sbjct: 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 731
Query: 199 VPPNIDILYCEQEVVA 214
N I Y +Q A
Sbjct: 732 THENCRIAYIKQHAFA 747
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 118 bits (295), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 111/242 (45%), Gaps = 40/242 (16%)
Query: 152 FSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN---IDILYC 208
FS++ L L + RRYG+ GPNG GK+TL R IA+ + P +Y
Sbjct: 435 FSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRTVYV 494
Query: 209 EQEVVADDLTAVESVLKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGADSA 268
E ++ D + SVL DF E KE ++
Sbjct: 495 EHDI--DGTHSDTSVL-------------------DFVFESGVGTKEAIKDK-------- 525
Query: 269 EPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAV 328
L GF+ SGGW+ +++LARA+ +LLLDEPTNHLD V
Sbjct: 526 -------LIEFGFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNV 578
Query: 329 IWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF-KKMYAQKSKE 387
WL NYL T + +SHD FLDNVC II+ + KL YKGN++ F KK A K+ E
Sbjct: 579 AWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYE 638
Query: 388 RM 389
+
Sbjct: 639 EL 640
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 43/69 (62%)
Query: 291 KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQS 350
+ SGG ++++ LA + P L++LDEPTN+LD +++ L L+ ++ ++I++H
Sbjct: 894 RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAE 953
Query: 351 FLDNVCNEI 359
F N+ E+
Sbjct: 954 FTKNLTEEV 962
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 111/242 (45%), Gaps = 40/242 (16%)
Query: 152 FSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN---IDILYC 208
FS++ L L + RRYG+ GPNG GK+TL R IA+ + P +Y
Sbjct: 441 FSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRTVYV 500
Query: 209 EQEVVADDLTAVESVLKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGADSA 268
E ++ D + SVL DF E KE ++
Sbjct: 501 EHDI--DGTHSDTSVL-------------------DFVFESGVGTKEAIKDK-------- 531
Query: 269 EPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAV 328
L GF+ SGGW+ +++LARA+ +LLLDEPTNHLD V
Sbjct: 532 -------LIEFGFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNV 584
Query: 329 IWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF-KKMYAQKSKE 387
WL NYL T + +SHD FLDNVC II+ + KL YKGN++ F KK A K+ E
Sbjct: 585 AWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYE 644
Query: 388 RM 389
+
Sbjct: 645 EL 646
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 43/69 (62%)
Query: 291 KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQS 350
+ SGG ++++ LA + P L++LDEPTN+LD +++ L L+ ++ ++I++H
Sbjct: 900 RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAE 959
Query: 351 FLDNVCNEI 359
F N+ E+
Sbjct: 960 FTKNLTEEV 968
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 268 AEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD--- 324
A RA + LA +G Q + + SGG + RVS+ARAL +EP +LL DEPT+ LD
Sbjct: 129 ARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPEL 188
Query: 325 LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
+ V+ + L KT+++V+H+ F +V + +I L Q K+
Sbjct: 189 VGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 231
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 97/232 (41%), Gaps = 63/232 (27%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVAD-------- 215
N N+ I NG R+G++GP+G GKTT +R IA D+ P+ LY + +VA
Sbjct: 23 NVNINIENGERFGILGPSGAGKTTFMRIIAGLDV---PSTGELYFDDRLVASNGKLIVPP 79
Query: 216 ----------------DLTAVESVLKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEE 259
+LTA E++ + ++E K + E
Sbjct: 80 EDRKIGMVFQTWALYPNLTAFENI---------------AFPLTNMKMSKEEIRKRVEEV 124
Query: 260 LKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEP 319
K + R L+G G + RV+LARAL +P+LLLLDEP
Sbjct: 125 AKILDIHHVLNHFPRELSG-----------------GQQQRVALARALVKDPSLLLLDEP 167
Query: 320 TNHLDL----NAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
++LD +A + TLL+VSHD + + + + + L + KL
Sbjct: 168 FSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKL 219
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 97/216 (44%), Gaps = 34/216 (15%)
Query: 145 VDIKVENFSISAKGNDLFVN-ANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI 203
V++K+EN + GN VN NL I +G L+GP+G GKTT LR IA L+ P
Sbjct: 10 VEVKLENLT-KRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG--LEEPTEG 66
Query: 204 DILYCEQEVVADDLTAVESVLKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYE----- 258
I + +++V + L + F S +YE
Sbjct: 67 RIYFGDRDV---------TYLPPKDRNISMV----------FQSYAVWPHMTVYENIAFP 107
Query: 259 -ELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLD 317
++K D + R R L + +R SGG R RV++ARA+ +EP +LL+D
Sbjct: 108 LKIKKFPKDEIDKRVRWAAELLQIEELL-NRYPAQLSGGQRQRVAVARAIVVEPDVLLMD 166
Query: 318 EPTNHLDLNAVIWLDNYL----QGWKKTLLIVSHDQ 349
EP ++LD + + + Q K T + V+HDQ
Sbjct: 167 EPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ 202
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 97/216 (44%), Gaps = 34/216 (15%)
Query: 145 VDIKVENFSISAKGNDLFVN-ANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI 203
V++K+EN + GN VN NL I +G L+GP+G GKTT LR IA L+ P
Sbjct: 11 VEVKLENLT-KRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG--LEEPTEG 67
Query: 204 DILYCEQEVVADDLTAVESVLKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYE----- 258
I + +++V + L + F S +YE
Sbjct: 68 RIYFGDRDV---------TYLPPKDRNISMV----------FQSYAVWPHMTVYENIAFP 108
Query: 259 -ELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLD 317
++K D + R R L + +R SGG R RV++ARA+ +EP +LL+D
Sbjct: 109 LKIKKFPKDEIDKRVRWAAELLQIEELL-NRYPAQLSGGQRQRVAVARAIVVEPDVLLMD 167
Query: 318 EPTNHLDLNAVIWLDNYL----QGWKKTLLIVSHDQ 349
EP ++LD + + + Q K T + V+HDQ
Sbjct: 168 EPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ 203
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 96/223 (43%), Gaps = 29/223 (13%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
+ NL I G VGP+G GK+TLLR IA L+ + D+ E+ + +D E
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAG--LETITSGDLFIGEKRM--NDTPPAERG 76
Query: 224 LKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR 283
+ + F + KE+ + R ++ L +
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQ-----------RVNQVAEVLQLAH 125
Query: 284 AMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD----LNAVIWLDNYLQGWK 339
+ DR K SGG R RV++ R L EP++ LLDEP ++LD + I + +
Sbjct: 126 LL-DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG 184
Query: 340 KTLLIVSHDQSFLDNVCNEIIHLDQQK---------LYYYKGN 373
+T++ V+HDQ + ++I+ LD + LY+Y +
Sbjct: 185 RTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 227
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 96/223 (43%), Gaps = 29/223 (13%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
+ NL I G VGP+G GK+TLLR IA L+ + D+ E+ + +D E
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAG--LETITSGDLFIGEKRM--NDTPPAERG 76
Query: 224 LKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR 283
+ + F + KE+ + R ++ L +
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQ-----------RVNQVAEVLQLAH 125
Query: 284 AMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD----LNAVIWLDNYLQGWK 339
+ DR K SGG R RV++ R L EP++ LLDEP ++LD + I + +
Sbjct: 126 LL-DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG 184
Query: 340 KTLLIVSHDQSFLDNVCNEIIHLDQQK---------LYYYKGN 373
+T++ V+HDQ + ++I+ LD + LY+Y +
Sbjct: 185 RTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 227
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 97/232 (41%), Gaps = 63/232 (27%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVAD-------- 215
N N+ I NG R+G++GP+G GKTT +R IA D+ P+ LY + +VA
Sbjct: 23 NVNINIENGERFGILGPSGAGKTTFMRIIAGLDV---PSTGELYFDDRLVASNGKLIVPP 79
Query: 216 ----------------DLTAVESVLKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEE 259
+LTA E++ + ++E K + E
Sbjct: 80 EDRKIGMVFQTWALYPNLTAFENI---------------AFPLTNMKMSKEEIRKRVEEV 124
Query: 260 LKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEP 319
K + R L+G A Q R V+LARAL +P+LLLLDEP
Sbjct: 125 AKILDIHHVLNHFPRELSG-----AQQQR------------VALARALVKDPSLLLLDEP 167
Query: 320 TNHLDL----NAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
++LD +A + TLL+VSHD + + + + + L + KL
Sbjct: 168 FSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKL 219
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 86/197 (43%), Gaps = 28/197 (14%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
+ +L I +G L+GP+G GKTT LR IA + P +Y E +VAD V
Sbjct: 24 DLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLE---EPTRGQIYIEDNLVADPEKGVFVP 80
Query: 224 LKA-DVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYE------ELKAIGADSAEPRARRIL 276
K DV F S +Y+ +L+ + + R R +
Sbjct: 81 PKERDVAXV-------------FQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVA 127
Query: 277 AGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQ 336
LG + + +R + SGG R RV+L RA+ P + L DEP ++LD + L+
Sbjct: 128 EXLGLTELL-NRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELK 186
Query: 337 GWKK----TLLIVSHDQ 349
++ T + V+HDQ
Sbjct: 187 KLQRQLGVTTIYVTHDQ 203
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 96/223 (43%), Gaps = 29/223 (13%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
+ NL I G VGP+G GK+TLLR IA L+ + D+ E+ + +D E
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAG--LETITSGDLFIGEKRM--NDTPPAERG 76
Query: 224 LKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR 283
+ + F + KE+ + R ++ L +
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQ-----------RVNQVAEVLQLAH 125
Query: 284 AMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD----LNAVIWLDNYLQGWK 339
+ DR K SGG R RV++ R L EP++ LLD+P ++LD + I + +
Sbjct: 126 LL-DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLG 184
Query: 340 KTLLIVSHDQSFLDNVCNEIIHLDQQK---------LYYYKGN 373
+T++ V+HDQ + ++I+ LD + LY+Y +
Sbjct: 185 RTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 227
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 105/242 (43%), Gaps = 28/242 (11%)
Query: 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNID 204
V+IK+EN N NL I +G L+GP+G GK+TLL IA + P +
Sbjct: 2 VEIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG--IYKPTSGK 59
Query: 205 ILYCEQEVVADDLTAVESVLKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIG 264
I + E++V +L + + + F E ++ +E
Sbjct: 60 IYFDEKDVT--ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPRE--------- 108
Query: 265 ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
+ + R + L + + +R SGG + RV++ARAL EP +LLLDEP ++LD
Sbjct: 109 --EIDKKVREVAKMLHIDKLL-NRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165
Query: 325 LNAVIWLDNYLQGWKKTLLI----VSHDQ----SFLDNVC----NEIIHLDQQKLYYYKG 372
+ + L+ +K L I V+HDQ + D + EI+ + YYK
Sbjct: 166 ALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKP 225
Query: 373 NY 374
Y
Sbjct: 226 KY 227
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 97/203 (47%), Gaps = 30/203 (14%)
Query: 169 IANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL---- 224
I G +GL+GPNG GKTT LR I++ + P+ I+ + V ++ V ++
Sbjct: 38 IEEGEIFGLIGPNGAGKTTTLRIISTL---IKPSSGIVTVFGKNVVEEPHEVRKLISYLP 94
Query: 225 -KADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR 283
+A R ++S E ++E+ E RA I AGLG
Sbjct: 95 EEAGAYRNMQGIEYLRFVAGFYASSSSE-IEEMVE------------RATEI-AGLG--E 138
Query: 284 AMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--- 340
++DR + +S G ++ +ARAL + P L +LDEPT+ LD+ + L+ +
Sbjct: 139 KIKDRVS-TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGL 197
Query: 341 TLLIVSHDQSFLDNVCNEI--IH 361
T+L+ SH+ ++ +C+ I IH
Sbjct: 198 TILVSSHNMLEVEFLCDRIALIH 220
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 88/210 (41%), Gaps = 28/210 (13%)
Query: 169 IANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILY--CEQEVVADDLTAVESVLKA 226
+ +G L+GP+G GKTT L +A +Y E+ DD VL
Sbjct: 26 VKDGEFVALLGPSGCGKTTTLLMLAG-----------IYKPTSGEIYFDD------VLVN 68
Query: 227 DVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKA--IGADSAEPRARRILAGLGFSRA 284
D+ + + I L+A I D E R I L
Sbjct: 69 DIPPKYREVGMVFQNYALYP--HMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNL 126
Query: 285 MQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLI 344
+ DR SGG + RV+LARAL +P +LL DEP ++LD N + + ++ ++ L I
Sbjct: 127 L-DRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGI 185
Query: 345 ----VSHDQSFLDNVCNEIIHLDQQKLYYY 370
V+HDQ+ + + I +Q KL Y
Sbjct: 186 TSVYVTHDQAEAMTMASRIAVFNQGKLVQY 215
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 95/208 (45%), Gaps = 28/208 (13%)
Query: 166 NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225
N+ I G ++GP+G GK+T LR + N+ + E E++ D + LK
Sbjct: 23 NVHIREGEVVVVIGPSGSGKSTFLRCL---------NLLEDFDEGEIIIDGIN-----LK 68
Query: 226 ADVKRTXXXXXXXXXXXXDFS-SEQQEQLKEIY---EELKAIGADSAEPRARRILAGLGF 281
A F+ L I +++ + AE +A +L +G
Sbjct: 69 AKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVG- 127
Query: 282 SRAMQDRA---TKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD---LNAVIWLDNYL 335
++D+A + SGG RV++ARAL +EP ++L DEPT+ LD + V+ + L
Sbjct: 128 ---LKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQL 184
Query: 336 QGWKKTLLIVSHDQSFLDNVCNEIIHLD 363
T+++V+H+ F V + ++ +D
Sbjct: 185 ANEGMTMVVVTHEMGFAREVGDRVLFMD 212
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 90/200 (45%), Gaps = 15/200 (7%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
N +L + G+ YG++G +G GK+TL+R + L+ P +L QE+ ++
Sbjct: 23 NVSLHVPAGQIYGVIGASGAGKSTLIRCV--NLLERPTEGSVLVDGQELT--------TL 72
Query: 224 LKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR 283
++++ + SS + EL D + R +L+ +G
Sbjct: 73 SESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD 132
Query: 284 AMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--- 340
D N SGG + RV++ARAL P +LL DE T+ LD + L+ +
Sbjct: 133 K-HDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLG 191
Query: 341 -TLLIVSHDQSFLDNVCNEI 359
T+L+++H+ + +C+ +
Sbjct: 192 LTILLITHEMDVVKRICDCV 211
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 95/208 (45%), Gaps = 28/208 (13%)
Query: 166 NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225
N+ I G ++GP+G GK+T LR + N+ + E E++ D + LK
Sbjct: 44 NVHIREGEVVVVIGPSGSGKSTFLRCL---------NLLEDFDEGEIIIDGIN-----LK 89
Query: 226 ADVKRTXXXXXXXXXXXXDFS-SEQQEQLKEIY---EELKAIGADSAEPRARRILAGLGF 281
A F+ L I +++ + AE +A +L +G
Sbjct: 90 AKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVG- 148
Query: 282 SRAMQDRATK---NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD---LNAVIWLDNYL 335
++D+A + SGG RV++ARAL +EP ++L DEPT+ LD + V+ + L
Sbjct: 149 ---LKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQL 205
Query: 336 QGWKKTLLIVSHDQSFLDNVCNEIIHLD 363
T+++V+H+ F V + ++ +D
Sbjct: 206 ANEGMTMVVVTHEMGFAREVGDRVLFMD 233
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 90/200 (45%), Gaps = 15/200 (7%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
N +L + G+ YG++G +G GK+TL+R + L+ P +L QE+ ++
Sbjct: 46 NVSLHVPAGQIYGVIGASGAGKSTLIRCV--NLLERPTEGSVLVDGQELT--------TL 95
Query: 224 LKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR 283
++++ + SS + EL D + R +L+ +G
Sbjct: 96 SESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD 155
Query: 284 AMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--- 340
D N SGG + RV++ARAL P +LL D+ T+ LD + L+ +
Sbjct: 156 K-HDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLG 214
Query: 341 -TLLIVSHDQSFLDNVCNEI 359
T+L+++H+ + +C+ +
Sbjct: 215 LTILLITHEMDVVKRICDCV 234
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 91/200 (45%), Gaps = 15/200 (7%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
N +L + G+ YG++G +G GK+TL+R + L+ P +L QE+ ++
Sbjct: 46 NVSLHVPAGQIYGVIGASGAGKSTLIRCV--NLLERPTEGSVLVDGQELT--------TL 95
Query: 224 LKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR 283
++++ + SS + EL D + R +L+ +G
Sbjct: 96 SESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD 155
Query: 284 AMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--- 340
D N SGG + RV++ARAL P +LL D+ T+ LD + L+ +
Sbjct: 156 K-HDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLG 214
Query: 341 -TLLIVSHDQSFLDNVCNEI 359
T+L+++H+ + +C+ +
Sbjct: 215 LTILLITHEXDVVKRICDCV 234
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 113/240 (47%), Gaps = 23/240 (9%)
Query: 140 ALENAVDIKVENFSISAKGN-DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK 198
+ + A++ K +F+ A+ +F + +L I +G LVGP+G GK+T+L + L
Sbjct: 368 SFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLL--RLY 425
Query: 199 VPPNIDILYCEQEVVADD----LTAVESVLKADVKRTXXXXXXXXXXXXDFSSEQQEQLK 254
P + I ++ + + + +V + + + D SS E+++
Sbjct: 426 DPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQ 485
Query: 255 EIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLL 314
+ E A+ P+ GF+ + ++ SGG + R+++ARAL P +L
Sbjct: 486 RVAEVANAVAFIRNFPQ--------GFNTVVGEKGVL-LSGGQKQRIAIARALLKNPKIL 536
Query: 315 LLDEPTNHLDL-NAVI---WLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370
LLDE T+ LD N + LD + G +T+L+++H S + N N + LDQ K+ Y
Sbjct: 537 LLDEATSALDAENEYLVQEALDRLMDG--RTVLVIAHHLSTIKN-ANMVAVLDQGKITEY 593
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 89/195 (45%), Gaps = 28/195 (14%)
Query: 166 NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225
+L + +G L+GP+G GKTT LR IA + P+ +Y ++VAD + K
Sbjct: 23 SLEVKDGEFMILLGPSGCGKTTTLRMIAGLE---EPSRGQIYIGDKLVADPEKGIFVPPK 79
Query: 226 -ADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYE------ELKAIGADSAEPRARRILAG 278
D+ F S +Y+ +L+ + + R R +
Sbjct: 80 DRDIAMV-------------FQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAEL 126
Query: 279 LGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW 338
LG + + +R + SGG R RV+L RA+ +P + L+DEP ++LD + + L+
Sbjct: 127 LGLTELL-NRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKL 185
Query: 339 KK----TLLIVSHDQ 349
++ T + V+HDQ
Sbjct: 186 QRQLGVTTIYVTHDQ 200
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 108/241 (44%), Gaps = 36/241 (14%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
I++ + S G+ + + N G+ Y +VG NG GKTTLL+ +A +L
Sbjct: 12 IELNSVSFRYNGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAG----------LL 61
Query: 207 YCEQEVVADDLTAVESVLKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEE-----LK 261
E+ D A +L+ +V F + + + EE L+
Sbjct: 62 AAAGEIFLDGSPADPFLLRKNVGYV-------------FQNPSSQIIGATVEEDVAFSLE 108
Query: 262 AIGADSAEPRAR--RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEP 319
+G D +E R R ++L +G S + N SGG + R+++A L + L LDEP
Sbjct: 109 IMGLDESEMRKRIKKVLELVGLS-GLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEP 167
Query: 320 TNHLD---LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376
+ LD + + L+ K +++V+H+ +LD++ + I+H+ + + G++
Sbjct: 168 VSMLDPPSQREIFQVLESLKNEGKGIILVTHELEYLDDM-DFILHISNGTIDFC-GSWEE 225
Query: 377 F 377
F
Sbjct: 226 F 226
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 91/214 (42%), Gaps = 34/214 (15%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
N +L+I G + G G GK+TLL+ +A L P + D+LY
Sbjct: 25 NVSLVINEGECLLVAGNTGSGKSTLLQIVAG--LIEPTSGDVLY---------------- 66
Query: 224 LKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGADSAEPRARRI-------- 275
D +R E Q + +++E+ A + P +
Sbjct: 67 ---DGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEV-AFAVKNFYPDRDPVPLVKKAME 122
Query: 276 LAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYL 335
GL F + +DR SGG + RV++A + EP +L+LDEP LD L +
Sbjct: 123 FVGLDFD-SFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIV 181
Query: 336 QGWK---KTLLIVSHDQSFLDNVCNEIIHLDQQK 366
+ WK KT++++SHD + N + ++ L++ K
Sbjct: 182 EKWKTLGKTVILISHDIETVINHVDRVVVLEKGK 215
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 91/214 (42%), Gaps = 34/214 (15%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
N +L+I G + G G GK+TLL+ +A L P + D+LY
Sbjct: 27 NVSLVINEGECLLVAGNTGSGKSTLLQIVAG--LIEPTSGDVLY---------------- 68
Query: 224 LKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGADSAEPRARRI-------- 275
D +R E Q + +++E+ A + P +
Sbjct: 69 ---DGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEV-AFAVKNFYPDRDPVPLVKKAME 124
Query: 276 LAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYL 335
GL F + +DR SGG + RV++A + EP +L+LDEP LD L +
Sbjct: 125 FVGLDFD-SFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIV 183
Query: 336 QGWK---KTLLIVSHDQSFLDNVCNEIIHLDQQK 366
+ WK KT++++SHD + N + ++ L++ K
Sbjct: 184 EKWKTLGKTVILISHDIETVINHVDRVVVLEKGK 217
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 113/240 (47%), Gaps = 23/240 (9%)
Query: 140 ALENAVDIKVENFSISAKGN-DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK 198
+ + A++ K +F+ A+ +F + +L I +G LVGP+G GK+T+L + L
Sbjct: 337 SFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLL--RLY 394
Query: 199 VPPNIDILYCEQEVVADD----LTAVESVLKADVKRTXXXXXXXXXXXXDFSSEQQEQLK 254
P + I ++ + + + +V + + + D SS E+++
Sbjct: 395 DPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQ 454
Query: 255 EIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLL 314
+ E A+ P+ GF+ + ++ SGG + R+++ARAL P +L
Sbjct: 455 RVAEVANAVAFIRNFPQ--------GFNTVVGEKGVL-LSGGQKQRIAIARALLKNPKIL 505
Query: 315 LLDEPTNHLDL-NAVI---WLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370
LLDE T+ LD N + LD + G +T+L+++H S + N N + LDQ K+ Y
Sbjct: 506 LLDEATSALDAENEYLVQEALDRLMDG--RTVLVIAHRLSTIKN-ANMVAVLDQGKITEY 562
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 91/214 (42%), Gaps = 22/214 (10%)
Query: 147 IKVENFSISAKGNDLFV----NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN 202
IK++N + + K + + N NL I G + GP+G GK+T L I D
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 203 IDILYCEQEVVADD-LTAVESVLKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELK 261
+ I + + DD LT + + ++ + +L I+ K
Sbjct: 62 VYIDNIKTNDLDDDELTKIR-------RDKIGFVFQQFNLIPLLTALENVELPLIF---K 111
Query: 262 AIGADSAEPRARRILAGLGFSRAMQDRAT---KNFSGGWRMRVSLARALYIEPTLLLLDE 318
GA S E R +R L L + + A SGG + RV++ARAL P ++L DE
Sbjct: 112 YRGAXSGEERRKRALECLKXAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADE 171
Query: 319 PTNHLDLNAVIWLDNYLQGWK----KTLLIVSHD 348
PT LD + L+ KT+++V+HD
Sbjct: 172 PTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHD 205
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 90/220 (40%), Gaps = 31/220 (14%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
+ I G GL+GP+G GKTT+LR IA L+ P D+ + V DL +
Sbjct: 33 GVSFQIREGEMVGLLGPSGSGKTTILRLIAG--LERPTKGDVWIGGKRVT--DLPPQKRN 88
Query: 224 LKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR 283
+ + F L+E K + D + R R +L F R
Sbjct: 89 VGLVFQNYALFQHMTVYDNVSFG------LRE-----KRVPKDEMDARVRELLR---FMR 134
Query: 284 --AMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG---- 337
+ +R SGG + RV+LARAL P +LL DEP +D L +++
Sbjct: 135 LESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDE 194
Query: 338 WKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377
T + V+HDQ E + + + L ++GN F
Sbjct: 195 MGVTSVFVTHDQ-------EEALEVADRVLVLHEGNVEQF 227
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 83/193 (43%), Gaps = 18/193 (9%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD-LTAVES 222
N NL I G ++GP+G GK+T+L I D + I + + DD LT +
Sbjct: 23 NVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR- 81
Query: 223 VLKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFS 282
+ ++ + +L I+ K GA S E R +R L L +
Sbjct: 82 ------RDKIGFVFQQFNLIPLLTALENVELPLIF---KYRGAMSGEERRKRALECLKMA 132
Query: 283 RAMQDRAT---KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK 339
+ A SGG + RV++ARAL P ++L D+PT LD + L+
Sbjct: 133 ELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLN 192
Query: 340 ----KTLLIVSHD 348
KT+++V+HD
Sbjct: 193 EEDGKTVVVVTHD 205
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 108/252 (42%), Gaps = 29/252 (11%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR-DLKVPPNI-- 203
+ +++ +S + + +L + G + ++GPNG GK+TL +A R D +V
Sbjct: 21 LSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVE 80
Query: 204 ----DILYCEQEVVADDLTAVESVLKADVKRTXXXXXXXXXXXXDFSSEQQEQL-----K 254
D+L E A + + ++ S QE L +
Sbjct: 81 FKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQ 140
Query: 255 EIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLL 314
++ EE A+ + R + G FSGG + R + + +EP L
Sbjct: 141 DLMEEKIALLKMPEDLLTRSVNVG--------------FSGGEKKRNDILQMAVLEPELC 186
Query: 315 LLDEPTNHLDLNAV-IWLD--NYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371
+LDE + LD++A+ + D N L+ K++ +IV+H Q LD + + +H+ Q
Sbjct: 187 ILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS 246
Query: 372 GNYSMFKKMYAQ 383
G++++ K++ Q
Sbjct: 247 GDFTLVKQLEEQ 258
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 108/252 (42%), Gaps = 29/252 (11%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR-DLKVPPNI-- 203
+ +++ +S + + +L + G + ++GPNG GK+TL +A R D +V
Sbjct: 2 LSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVE 61
Query: 204 ----DILYCEQEVVADDLTAVESVLKADVKRTXXXXXXXXXXXXDFSSEQQEQL-----K 254
D+L E A + + ++ S QE L +
Sbjct: 62 FKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQ 121
Query: 255 EIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLL 314
++ EE A+ + R + G FSGG + R + + +EP L
Sbjct: 122 DLMEEKIALLKMPEDLLTRSVNVG--------------FSGGEKKRNDILQMAVLEPELC 167
Query: 315 LLDEPTNHLDLNAV-IWLD--NYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371
+LDE + LD++A+ + D N L+ K++ +IV+H Q LD + + +H+ Q
Sbjct: 168 ILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS 227
Query: 372 GNYSMFKKMYAQ 383
G++++ K++ Q
Sbjct: 228 GDFTLVKQLEEQ 239
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 94/210 (44%), Gaps = 21/210 (10%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLT----A 219
N NL I G G+VG +G GK+TL + I + +P N +L ++ D
Sbjct: 21 NINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWLRRQ 78
Query: 220 VESVLKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGL 279
V VL+ +V S E K IY K GA R
Sbjct: 79 VGVVLQDNVLLNRSIIDNISLANPGMSVE-----KVIYAA-KLAGAHDFISELRE----- 127
Query: 280 GFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA--VIWLDNYLQG 337
G++ + ++ SGG R R+++ARAL P +L+ DE T+ LD + VI + +
Sbjct: 128 GYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC 186
Query: 338 WKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
+T++I++H S + N + II +++ K+
Sbjct: 187 KGRTVIIIAHRLSTVKN-ADRIIVMEKGKI 215
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 94/210 (44%), Gaps = 21/210 (10%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLT----A 219
N NL I G G+VG +G GK+TL + I + +P N +L ++ D
Sbjct: 27 NINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWLRRQ 84
Query: 220 VESVLKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGL 279
V VL+ +V S E K IY K GA R
Sbjct: 85 VGVVLQDNVLLNRSIIDNISLANPGMSVE-----KVIYAA-KLAGAHDFISELRE----- 133
Query: 280 GFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA--VIWLDNYLQG 337
G++ + ++ SGG R R+++ARAL P +L+ DE T+ LD + VI + +
Sbjct: 134 GYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC 192
Query: 338 WKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
+T++I++H S + N + II +++ K+
Sbjct: 193 KGRTVIIIAHRLSTVKN-ADRIIVMEKGKI 221
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 94/210 (44%), Gaps = 21/210 (10%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLT----A 219
N NL I G G+VG +G GK+TL + I + +P N +L ++ D
Sbjct: 23 NINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWLRRQ 80
Query: 220 VESVLKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGL 279
V VL+ +V S E K IY K GA R
Sbjct: 81 VGVVLQDNVLLNRSIIDNISLANPGMSVE-----KVIYAA-KLAGAHDFISELRE----- 129
Query: 280 GFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA--VIWLDNYLQG 337
G++ + ++ SGG R R+++ARAL P +L+ DE T+ LD + VI + +
Sbjct: 130 GYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC 188
Query: 338 WKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
+T++I++H S + N + II +++ K+
Sbjct: 189 KGRTVIIIAHRLSTVKN-ADRIIVMEKGKI 217
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 100/235 (42%), Gaps = 36/235 (15%)
Query: 158 GNDLFVNANL-LIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCE------- 209
G + FV L ++ +G G+VGPNG GKTT ++ +A ++ PN+ CE
Sbjct: 88 GVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAG---QLIPNL----CEDNDSWDN 140
Query: 210 --QEVVADDLTAVESVLKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGADS 267
+ ++L LK R + +E LK++ +E+
Sbjct: 141 VIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV-DEVGKFEEVV 199
Query: 268 AEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA 327
E +L DR SGG RV++A AL + DEP+++LD+
Sbjct: 200 KELELENVL----------DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ 249
Query: 328 ---VIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKK 379
V + L K +L+V HD + LD + +++IH+ +Y G Y +F K
Sbjct: 250 RLKVARVIRRLANEGKAVLVVEHDLAVLDYL-SDVIHV----VYGEPGVYGIFSK 299
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 88/201 (43%), Gaps = 45/201 (22%)
Query: 169 IANGRRYGLVGPNGHGKTTLLRHIAS----RDLKVPPNIDILYCEQEVVAD-DLTAVESV 223
I G G+VGPNG GKTT ++ +A + KV ++ + Y Q + A+ + T E +
Sbjct: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELL 424
Query: 224 LKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR 283
K D SS+ + E LK +G
Sbjct: 425 SKID------------------SSKLNSNFYKT-ELLKPLGIID---------------- 449
Query: 284 AMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLD----NYLQGWK 339
+ DR ++ SGG RV++A L + + LLDEP+ +LD+ + + + ++ +
Sbjct: 450 -LYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE 508
Query: 340 KTLLIVSHDQSFLDNVCNEII 360
KT L+V HD +D V + +I
Sbjct: 509 KTALVVEHDVLMIDYVSDRLI 529
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 100/235 (42%), Gaps = 36/235 (15%)
Query: 158 GNDLFVNANL-LIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCE------- 209
G + FV L ++ +G G+VGPNG GKTT ++ +A ++ PN+ CE
Sbjct: 102 GVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAG---QLIPNL----CEDNDSWDN 154
Query: 210 --QEVVADDLTAVESVLKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGADS 267
+ ++L LK R + +E LK++ +E+
Sbjct: 155 VIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV-DEVGKFEEVV 213
Query: 268 AEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA 327
E +L DR SGG RV++A AL + DEP+++LD+
Sbjct: 214 KELELENVL----------DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ 263
Query: 328 ---VIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKK 379
V + L K +L+V HD + LD + +++IH+ +Y G Y +F K
Sbjct: 264 RLKVARVIRRLANEGKAVLVVEHDLAVLDYL-SDVIHV----VYGEPGVYGIFSK 313
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 88/201 (43%), Gaps = 45/201 (22%)
Query: 169 IANGRRYGLVGPNGHGKTTLLRHIAS----RDLKVPPNIDILYCEQEVVAD-DLTAVESV 223
I G G+VGPNG GKTT ++ +A + KV ++ + Y Q + A+ + T E +
Sbjct: 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELL 438
Query: 224 LKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR 283
K D SS+ + E LK +G
Sbjct: 439 SKID------------------SSKLNSNFYKT-ELLKPLGIID---------------- 463
Query: 284 AMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLD----NYLQGWK 339
+ DR ++ SGG RV++A L + + LLDEP+ +LD+ + + + ++ +
Sbjct: 464 -LYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE 522
Query: 340 KTLLIVSHDQSFLDNVCNEII 360
KT L+V HD +D V + +I
Sbjct: 523 KTALVVEHDVLMIDYVSDRLI 543
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 29/41 (70%)
Query: 285 MQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL 325
+ DR SGG R RV+LARAL I+P LLLLDEP + +DL
Sbjct: 119 LLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDL 159
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 94/207 (45%), Gaps = 31/207 (14%)
Query: 148 KVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILY 207
K +NFS+ N +L + +G + ++GP G GKT L IA VP + IL
Sbjct: 10 KWKNFSLD--------NLSLKVESGEYFVILGPTGAGKTLFLELIAG--FHVPDSGRILL 59
Query: 208 CEQEVVADDLTAVESVLKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGADS 267
++V DL S K D+ + E ++K+I + + + D+
Sbjct: 60 DGKDVT--DL----SPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVL--DT 111
Query: 268 AEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL-- 325
A R +I + DR SGG + RV+LARAL P +LLLDEP + LD
Sbjct: 112 A--RDLKI-------EHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRT 162
Query: 326 --NAVIWLDNYLQGWKKTLLIVSHDQS 350
NA L + K T+L ++HDQ+
Sbjct: 163 QENAREMLSVLHKKNKLTVLHITHDQT 189
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 81/199 (40%), Gaps = 43/199 (21%)
Query: 169 IANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAV--ESVLKA 226
I G G+VGPNG GKTT ++ +A + I+ DLT +KA
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEW----------DLTVAYKPQYIKA 358
Query: 227 DVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGADSAEPRARR--ILAGLGFSRA 284
D + T +YE L I A + +L LG
Sbjct: 359 DYEGT------------------------VYELLSKIDASKLNSNFYKTELLKPLGII-D 393
Query: 285 MQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KK 340
+ DR SGG RV++A L + + LLDEP+ +LD+ + + ++ +K
Sbjct: 394 LYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEK 453
Query: 341 TLLIVSHDQSFLDNVCNEI 359
T L+V HD +D V + +
Sbjct: 454 TALVVEHDVLXIDYVSDRL 472
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 109/247 (44%), Gaps = 40/247 (16%)
Query: 148 KVENFSISAKGNDLFVNANL-LIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
++E + G + FV L ++ G G+VGPNG GK+T ++ +A ++ PN+
Sbjct: 22 QLEEDCVHRYGVNAFVLYRLPVVKEGXVVGIVGPNGTGKSTAVKILAG---QLIPNL--- 75
Query: 207 YCEQEVVADDLTAVESVLKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEEL--KAIG 264
D + + V++A + E + +K Y +L KA+
Sbjct: 76 -------CGDNDSWDGVIRAFRGNELQNYFEKLK-----NGEIRPVVKPQYVDLIPKAVK 123
Query: 265 ADSAE--------PRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLL 316
E + ++ L ++ R ++ SGG RV++A AL T
Sbjct: 124 GKVIELLKKADETGKLEEVVKALELENVLE-REIQHLSGGELQRVAIAAALLRNATFYFF 182
Query: 317 DEPTNHLD----LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372
DEP+++LD LNA + L K++L+V HD + LD + ++IIH+ +Y G
Sbjct: 183 DEPSSYLDIRQRLNAARAIRR-LSEEGKSVLVVEHDLAVLDYL-SDIIHV----VYGEPG 236
Query: 373 NYSMFKK 379
Y +F +
Sbjct: 237 VYGIFSQ 243
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 93/210 (44%), Gaps = 21/210 (10%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLT----A 219
N NL I G G+VG G GK+TL + I + +P N +L ++ D
Sbjct: 23 NINLSIKQGEVIGIVGRAGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWLRRQ 80
Query: 220 VESVLKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGL 279
V VL+ +V S E K IY K GA R
Sbjct: 81 VGVVLQDNVLLNRSIIDNISLANPGMSVE-----KVIYAA-KLAGAHDFISELRE----- 129
Query: 280 GFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA--VIWLDNYLQG 337
G++ + ++ SGG R R+++ARAL P +L+ DE T+ LD + VI + +
Sbjct: 130 GYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC 188
Query: 338 WKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
+T++I++H S + N + II +++ K+
Sbjct: 189 KGRTVIIIAHRLSTVKN-ADRIIVMEKGKI 217
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 94/210 (44%), Gaps = 21/210 (10%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLT----A 219
N NL I G G+VG +G GK+TL + I + +P N +L ++ D
Sbjct: 27 NINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWLRRQ 84
Query: 220 VESVLKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGL 279
V VL+ +V S E K IY K GA R
Sbjct: 85 VGVVLQDNVLLNRSIIDNISLANPGMSVE-----KVIYAA-KLAGAHDFISELRE----- 133
Query: 280 GFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA--VIWLDNYLQG 337
G++ + ++ SGG R R+++ARAL P +L+ D+ T+ LD + VI + +
Sbjct: 134 GYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKIC 192
Query: 338 WKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
+T++I++H S + N + II +++ K+
Sbjct: 193 KGRTVIIIAHRLSTVKN-ADRIIVMEKGKI 221
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 83/193 (43%), Gaps = 18/193 (9%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD-LTAVES 222
N NL I G ++GP+G GK+T+L I D + I + + DD LT +
Sbjct: 23 NVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR- 81
Query: 223 VLKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFS 282
+ ++ + +L I+ K GA S E R +R L L +
Sbjct: 82 ------RDKIGFVFQQFNLIPLLTALENVELPLIF---KYRGAMSGEERRKRALECLKMA 132
Query: 283 RAMQDRAT---KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK 339
+ A SGG + RV++ARAL P ++L D+PT LD + L+
Sbjct: 133 ELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLN 192
Query: 340 ----KTLLIVSHD 348
KT+++V+HD
Sbjct: 193 EEDGKTVVVVTHD 205
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 111/260 (42%), Gaps = 48/260 (18%)
Query: 141 LENAVDIKVENFSISAKGNDLFVNA-NLLIANGRRYGLVGPNGHGKTT---LLRHIAS-- 194
LE V + +F+ + + L + + G LVGPNG GK+T LL+++
Sbjct: 11 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 70
Query: 195 -----RDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTXXXXXXXXXXXXDFSSEQ 249
D K P + Y ++V A V + + Q
Sbjct: 71 GGQLLLDGKPLPQYEHRYLHRQVAA-------------VGQEPQVFGRSLQENIAYGLTQ 117
Query: 250 QEQLKEIYEELKAIGADSAEPRARRILAGL--GFSRAMQDRATKNFSGGWRMRVSLARAL 307
+ ++EI A + + A ++GL G+ + D A SGG R V+LARAL
Sbjct: 118 KPTMEEIT-------AAAVKSGAHSFISGLPQGYDTEV-DEAGSQLSGGQRQAVALARAL 169
Query: 308 YIEPTLLLLDEPTNHLDLNAVIWLDNYL----QGWKKTLLIVSHDQSFLDNVCNEIIHLD 363
+P +L+LD+ T+ LD N+ + ++ L + + +++L+++ S ++ + I+ L+
Sbjct: 170 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQ-ADHILFLE 228
Query: 364 ---------QQKLYYYKGNY 374
Q+L KG Y
Sbjct: 229 GGAIREGGTHQQLMEKKGCY 248
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 8/108 (7%)
Query: 285 MQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK---- 340
++D+ T S G + RV++A L +EP +L+LDEPT LD V + L +K
Sbjct: 136 LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGI 195
Query: 341 TLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKER 388
T++I +HD + C+ + + + ++ +GN K+++A+K R
Sbjct: 196 TIIIATHDIDIVPLYCDNVFVMKEGRV-ILQGNP---KEVFAEKEVIR 239
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 93/210 (44%), Gaps = 21/210 (10%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLT----A 219
N NL I G G+VG +G GK+TL + I + +P N +L ++ D
Sbjct: 21 NINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWLRRQ 78
Query: 220 VESVLKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGL 279
V VL+ +V S E K IY K GA R
Sbjct: 79 VGVVLQDNVLLNRSIIDNISLANPGMSVE-----KVIYAA-KLAGAHDFISELRE----- 127
Query: 280 GFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA--VIWLDNYLQG 337
G++ + ++ SGG R R+++ARAL P +L+ DE T+ LD + VI + +
Sbjct: 128 GYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC 186
Query: 338 WKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
+T++I++ S + N + II +++ K+
Sbjct: 187 KGRTVIIIAARLSTVKN-ADRIIVMEKGKI 215
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 93/210 (44%), Gaps = 21/210 (10%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLT----A 219
N NL I G G+VG +G GK+TL + I + +P N +L ++ D
Sbjct: 27 NINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWLRRQ 84
Query: 220 VESVLKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGL 279
V VL+ +V S E K IY K GA R
Sbjct: 85 VGVVLQDNVLLNRSIIDNISLANPGMSVE-----KVIYAA-KLAGAHDFISELRE----- 133
Query: 280 GFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA--VIWLDNYLQG 337
G++ + ++ SGG R R+++ARAL P +L+ DE T+ LD + VI + +
Sbjct: 134 GYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC 192
Query: 338 WKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
+T++I++ S + N + II +++ K+
Sbjct: 193 KGRTVIIIAARLSTVKN-ADRIIVMEKGKI 221
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 21/108 (19%)
Query: 280 GFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA--VI--WLDNYL 335
G++ + DR T+ SGG + R+++ARAL P +LLLDE T+ LD + ++ LD
Sbjct: 543 GYNTLVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA 601
Query: 336 QGWKKTLLIVSHDQSFLDNV-----C--NEIIH-------LDQQKLYY 369
+G +T +I++H S + N C +++ + QQ LYY
Sbjct: 602 KG--RTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYY 647
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 14/120 (11%)
Query: 280 GFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA--VI--WLDNYL 335
GF + DR T+ SGG + R+++ARAL P +LLLDE T+ LD + V+ LD
Sbjct: 1206 GFETRVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR 1264
Query: 336 QGWKKTLLIVSHDQSFLDNVCN-EIIHLDQQKLYYYKGNYSMF---KKMYAQKSKERMKE 391
+G +T ++++H L+ V N + I + KG ++ K Y + ++++M E
Sbjct: 1265 EG--RTCIVIAHR---LNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYKLTQKQMTE 1319
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 22/171 (12%)
Query: 161 LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAV 220
L + +L IA+G ++GPNG GK+TLLR + + P+ + E ++ +L +
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTG---YLSPS----HGECHLLGQNLNSW 78
Query: 221 ESVLKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLG 280
+ KA + RT FS + E+ + +A S + +A + +
Sbjct: 79 QP--KA-LARTRAVMRQYSELAFPFS------VSEVIQMGRAPYGGSQDRQALQQVMAQT 129
Query: 281 FSRAMQDRATKNFSGGWRMRVSLARALY------IEPTLLLLDEPTNHLDL 325
A+ R + SGG + RV LAR L P L LDEPT+ LDL
Sbjct: 130 DCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDL 180
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL----NAVIWLDNYLQGWKKTLLIVSHD 348
SGG + RV +A AL ++P +L+LDEPT+ LD+ + + L + K TL+ V+HD
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLIFVTHD 214
Query: 349 QSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378
+ + +++ + L Y + +FK
Sbjct: 215 IAVAAELADKVAVIYGGNLVEYNSTFQIFK 244
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 268 AEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD-LN 326
A+ R +L+ LG + R SGG + RV++ARAL EP LL DEPT +LD N
Sbjct: 117 AKERGEYLLSELGLGDKL-SRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSAN 175
Query: 327 AVIWLDNYLQ--GWKKTLLIVSHDQSF 351
+D +L+ ++++V+H++
Sbjct: 176 TKRVMDIFLKINEGGTSIVMVTHEREL 202
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 67/178 (37%), Gaps = 45/178 (25%)
Query: 158 GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDL 217
GN + N NL I G + G G GKT+LL ++ +L
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLM---------------------LILGEL 88
Query: 218 TAVESVLKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGADSAEPRARRILA 277
A E ++K + + FS +KE IG E R + ++
Sbjct: 89 EASEGIIKHSGRVSFCS---------QFSWIMPGTIKE-----NIIGVSYDEYRYKSVVK 134
Query: 278 GLGFSR-----AMQDRAT-----KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL 325
+ A QD SGG R R+SLARA+Y + L LLD P +LD+
Sbjct: 135 ACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 67/178 (37%), Gaps = 44/178 (24%)
Query: 158 GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDL 217
GN + N NL I G + G G GKT+LL ++ +L
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLM---------------------LILGEL 88
Query: 218 TAVESVLKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGADSAEPRARRILA 277
A E ++K + + F S+ + +E G E R + ++
Sbjct: 89 EASEGIIKHSGRVS-------------FCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVK 135
Query: 278 GLGFSR-----AMQDRAT-----KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL 325
+ A QD SGG R R+SLARA+Y + L LLD P +LD+
Sbjct: 136 ACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 193
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 97/221 (43%), Gaps = 13/221 (5%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
+++ + S G + NL++ G + L+GPNG GK+TL + +A +IL
Sbjct: 4 LEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEIL 63
Query: 207 YCEQEVVADDLTAVESVLKADVKRTXXXXXXXXXXXXDFSS-EQQEQLKEIYEELKAIGA 265
+ ++ +L+ E K +F Q +L + +G
Sbjct: 64 LDGENIL--ELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLG------REVGV 115
Query: 266 DSAEPRARRILAGLGFSRAMQDR-ATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
+ ++ L L + + R + FSGG + R + + L +EPT +LDE + LD
Sbjct: 116 AEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD 175
Query: 325 LNAVIWLD---NYLQGWKKTLLIVSHDQSFLDNVCNEIIHL 362
++A+ + N ++G L+++H Q L+ + + +H+
Sbjct: 176 IDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHV 216
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 67/178 (37%), Gaps = 44/178 (24%)
Query: 158 GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDL 217
GN + N NL I G + G G GKT+LL ++ +L
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLM---------------------LILGEL 88
Query: 218 TAVESVLKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGADSAEPRARRILA 277
A E ++K + + F S+ + +E G E R + ++
Sbjct: 89 EASEGIIKHSGRVS-------------FCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVK 135
Query: 278 GLGFSR-----AMQDRAT-----KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL 325
+ A QD SGG R R+SLARA+Y + L LLD P +LD+
Sbjct: 136 ACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 193
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 92/219 (42%), Gaps = 29/219 (13%)
Query: 147 IKVENFSIS-AKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLR------HIASRDLKV 199
I+ EN S A G + + + + G+ LVGP+G GK+T+LR I+S +++
Sbjct: 54 IEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRI 113
Query: 200 PPNIDILYCEQEVVADDLTAV--ESVLKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIY 257
DI Q + + V ++VL D + E Q I+
Sbjct: 114 DGQ-DISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEV--EAAAQAAGIH 170
Query: 258 EELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLD 317
+ + A P R G +R K SGG + RV++AR + P ++LLD
Sbjct: 171 DAIMAF------PEGYRTQVG--------ERGLK-LSGGEKQRVAIARTILKAPGIILLD 215
Query: 318 EPTNHLDLNAVIWLDNYLQ--GWKKTLLIVSHDQSFLDN 354
E T+ LD + + L +T ++V+H S + N
Sbjct: 216 EATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN 254
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 25/211 (11%)
Query: 145 VDIKVENFSISAKGNDLFVNANL-LIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI 203
+ +K ++S KG + F N+ L NG + ++GPNG GKTTLLR I+ L NI
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVNGEKVIILGPNGSGKTTLLRAISGL-LPYSGNI 60
Query: 204 DILYCEQEVVADDLTAVESVLKA-DVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKA 262
I E + + + ++ +A ++ T + +YEELK
Sbjct: 61 FINGMEVRKIRNYIRYSTNLPEAYEIGVTV------------------NDIVYLYEELKG 102
Query: 263 IGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNH 322
+ D +L L + R S G + V + AL +P ++ LDEP +
Sbjct: 103 LDRD----LFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFEN 158
Query: 323 LDLNAVIWLDNYLQGWKKTLLIVSHDQSFLD 353
+D + Y++ + K ++V+H+ L+
Sbjct: 159 VDAARRHVISRYIKEYGKEGILVTHELDMLN 189
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 106/252 (42%), Gaps = 31/252 (12%)
Query: 131 MEKTGGQLAALENAVDIKVENFSISAKGN---DLFVNANLLIANGRRYGLVGPNGHGKTT 187
M G LA L +K ++ S + + + + G+ LVGPNG GK+T
Sbjct: 1 MSPLSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKST 60
Query: 188 LLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTXXXXXXXXXXXXDFSS 247
+ + ++L P +L + +V D + + + A V + +
Sbjct: 61 VAALL--QNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAA-VGQEPLLFGRSFRENIAYGL 117
Query: 248 EQQEQLKEIYEELKAIGADSAEPRARRILAGL--GFSRAMQDRATKNFSGGWRMRVSLAR 305
+ + EE+ A+ +S A ++G G+ + + + SGG R V+LAR
Sbjct: 118 TRTPTM----EEITAVAMESG---AHDFISGFPQGYDTEVGETGNQ-LSGGQRQAVALAR 169
Query: 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQ---GW-KKTLLIVSHDQSFLD-------- 353
AL +P LL+LD+ T+ LD + + L W +T+L+++H S +
Sbjct: 170 ALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFL 229
Query: 354 ---NVCNEIIHL 362
+VC + HL
Sbjct: 230 KEGSVCEQGTHL 241
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 66/178 (37%), Gaps = 44/178 (24%)
Query: 158 GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDL 217
GN + N NL I G + G G GKT+LL ++ +L
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLM---------------------LILGEL 88
Query: 218 TAVESVLKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGADSAEPRARRILA 277
A E ++K + F S+ + +E G E R + ++
Sbjct: 89 EASEGIIKHSGR-------------VSFCSQFSWIMPGTIKENIISGVSYDEYRYKSVVK 135
Query: 278 GLGFSR-----AMQDRAT-----KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL 325
+ A QD SGG R R+SLARA+Y + L LLD P +LD+
Sbjct: 136 ACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 193
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 17/114 (14%)
Query: 287 DRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA--VI--WLDNYLQGWKKTL 342
D+ T+ SGG + R+++ARAL +P +LLLDE T+ LD + V+ LD +G +T
Sbjct: 1167 DKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREG--RTC 1223
Query: 343 LIVSHDQSFLDNVCNEII--------HLDQQKLYYYKGNYSMFKKMYAQKSKER 388
++++H S + N ++ H Q+L KG Y F + Q +R
Sbjct: 1224 IVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIY--FSMVSVQAGAKR 1275
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 6/66 (9%)
Query: 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL--NAVI--WLDNYLQGWKKTLLIVSHD 348
SGG + R+++ARAL P +LLLDE T+ LD AV+ LD +G +T ++++H
Sbjct: 527 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREG--RTTIVIAHR 584
Query: 349 QSFLDN 354
S + N
Sbjct: 585 LSTVRN 590
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 17/114 (14%)
Query: 287 DRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA--VI--WLDNYLQGWKKTL 342
D+ T+ SGG + R+++ARAL +P +LLLDE T+ LD + V+ LD +G +T
Sbjct: 1167 DKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREG--RTC 1223
Query: 343 LIVSHDQSFLDNVCNEII--------HLDQQKLYYYKGNYSMFKKMYAQKSKER 388
++++H S + N ++ H Q+L KG Y F + Q +R
Sbjct: 1224 IVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIY--FSMVSVQAGAKR 1275
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 6/66 (9%)
Query: 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL--NAVI--WLDNYLQGWKKTLLIVSHD 348
SGG + R+++ARAL P +LLLDE T+ LD AV+ LD +G +T ++++H
Sbjct: 527 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREG--RTTIVIAHR 584
Query: 349 QSFLDN 354
S + N
Sbjct: 585 LSTVRN 590
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 66/178 (37%), Gaps = 44/178 (24%)
Query: 158 GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDL 217
GN + N NL I G + G G GKT+LL ++ +L
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLM---------------------LILGEL 88
Query: 218 TAVESVLKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGADSAEPRARRILA 277
A E ++K + F S+ + +E G E R + ++
Sbjct: 89 EASEGIIKHSGR-------------VSFCSQFSWIMPGTIKENIIRGVSYDEYRYKSVVK 135
Query: 278 GLGFSR-----AMQDRAT-----KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL 325
+ A QD SGG R R+SLARA+Y + L LLD P +LD+
Sbjct: 136 ACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 193
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 19/107 (17%)
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA-------VIWLDNYLQGWKKTLLI 344
N SGG + RVSLARA+Y + L D+P + +D + VI L+ KT ++
Sbjct: 127 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLK--NKTRIL 184
Query: 345 VSHDQSFLDNVCNEIIHL---------DQQKLYYYKGNYSMFKKMYA 382
V+H S+L V + II + Q+L G ++ F + YA
Sbjct: 185 VTHSMSYLPQV-DVIIVMSGGKISEMGSYQELLARDGAFAEFLRTYA 230
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 29/38 (76%)
Query: 287 DRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
+R +NFSGG + R+S+ARAL +P +L+LD+ T+ +D
Sbjct: 474 ERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 64/182 (35%), Gaps = 53/182 (29%)
Query: 158 GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR----DLKVPPNIDILYCEQEVV 213
G + + N I G+ + G G GKT+LL I + K+ + I +C Q
Sbjct: 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQ--- 76
Query: 214 ADDLTAVESVLKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGADSAEPRAR 273
FS +KE IG E R R
Sbjct: 77 -------------------------------FSWIMPGTIKE-----NIIGVSYDEYRYR 100
Query: 274 RILAGLGFSRAMQDRATKN----------FSGGWRMRVSLARALYIEPTLLLLDEPTNHL 323
++ + A K+ SGG R R+SLARA+Y + L LLD P +L
Sbjct: 101 SVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYL 160
Query: 324 DL 325
D+
Sbjct: 161 DV 162
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 68/193 (35%), Gaps = 55/193 (28%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR----DLKVPPN 202
+ NFS+ G + + N I G+ + G G GKT+LL I + K+ +
Sbjct: 41 LSFSNFSL--LGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS 98
Query: 203 IDILYCEQEVVADDLTAVESVLKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKA 262
I +C Q ++ +K
Sbjct: 99 GRISFCSQN---------SWIMPGTIKE------------------------------NI 119
Query: 263 IGADSAEPRARRILAGLGFSRAMQDRATKN----------FSGGWRMRVSLARALYIEPT 312
IG E R R ++ + A K+ SGG R R+SLARA+Y +
Sbjct: 120 IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 179
Query: 313 LLLLDEPTNHLDL 325
L LLD P +LD+
Sbjct: 180 LYLLDSPFGYLDV 192
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 67/189 (35%), Gaps = 55/189 (29%)
Query: 151 NFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR----DLKVPPNIDIL 206
NFS+ G + + N I G+ + G G GKT+LL I + K+ + I
Sbjct: 45 NFSL--LGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRIS 102
Query: 207 YCEQEVVADDLTAVESVLKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGAD 266
+C Q ++ +K IG
Sbjct: 103 FCSQN---------SWIMPGTIKE------------------------------NIIGVS 123
Query: 267 SAEPRARRILAGLGFSRAMQDRATKN----------FSGGWRMRVSLARALYIEPTLLLL 316
E R R ++ + A K+ SGG R R+SLARA+Y + L LL
Sbjct: 124 YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLL 183
Query: 317 DEPTNHLDL 325
D P +LD+
Sbjct: 184 DSPFGYLDV 192
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL 325
SGG R R+SLARA+Y + L LLD P +LD+
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLDV 193
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL 325
SGG R R+SLARA+Y + L LLD P +LD+
Sbjct: 142 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 175
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL 325
SGG R R+SLARA+Y + L LLD P +LD+
Sbjct: 130 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 163
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 288 RATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN----AVIWLDNYLQGWKKTLL 343
R + SGG R + +ARA+ E L+LLDEPT+ LDL + L + Q T++
Sbjct: 124 REFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVV 183
Query: 344 IVSHDQSFLDNVCNEIIHLDQQKLYY 369
+H + + + N+ + L++Q +
Sbjct: 184 FTTHQPNQVVAIANKTLLLNKQNFKF 209
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHDQS 350
SGG R R+++AR L +P +++ DE T+ LD ++ +K TL+I++H S
Sbjct: 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLS 215
Query: 351 FLDNVCNEIIHLDQQKL 367
+ + II L++ K+
Sbjct: 216 TISS-AESIILLNKGKI 231
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 105/252 (41%), Gaps = 31/252 (12%)
Query: 131 MEKTGGQLAALENAVDIKVENFSISAKGN---DLFVNANLLIANGRRYGLVGPNGHGKTT 187
M G LA L +K ++ S + + + + G+ LVGPNG GK+T
Sbjct: 1 MSPLSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKST 60
Query: 188 LLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTXXXXXXXXXXXXDFSS 247
+ + ++L P +L + +V D + + + A V + +
Sbjct: 61 VAALL--QNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAA-VGQEPLLFGRSFRENIAYGL 117
Query: 248 EQQEQLKEIYEELKAIGADSAEPRARRILAGL--GFSRAMQDRATKNFSGGWRMRVSLAR 305
+ + EE+ A+ +S A ++G G+ + + + SGG R V+LAR
Sbjct: 118 TRTPTM----EEITAVAMESG---AHDFISGFPQGYDTEVGETGNQ-LSGGQRQAVALAR 169
Query: 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQ---GW-KKTLLIVS---------HDQSFL 352
AL +P LL+LD T+ LD + + L W +T+L+++ H FL
Sbjct: 170 ALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFL 229
Query: 353 --DNVCNEIIHL 362
+VC + HL
Sbjct: 230 KEGSVCEQGTHL 241
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 287 DRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTL 342
D+ ++ SGG RV++ AL I + L+DEP+ +LD I ++ + KKT
Sbjct: 462 DQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTA 521
Query: 343 LIVSHD 348
IV HD
Sbjct: 522 FIVEHD 527
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 83/195 (42%), Gaps = 25/195 (12%)
Query: 172 GRRYGLVGPNGHGKTTLLRHIASRD------LKVPPNID--ILYCEQEVVADDLT-AVES 222
G+ GLVG NG GK+T L+ +A + PP I Y + + T +E
Sbjct: 103 GQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLED 162
Query: 223 VLKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFS 282
+KA +K + + ++++ E LK S E +R + L
Sbjct: 163 DIKAIIK---------PQYVDNIPRAIKGPVQKVGELLKLRMEKSPE-DVKRYIKILQLE 212
Query: 283 RAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD----LNAVIWLDNYLQGW 338
++ R + SGG R ++ + E + + DEP+++LD LNA + + L
Sbjct: 213 NVLK-RDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLL-AP 270
Query: 339 KKTLLIVSHDQSFLD 353
K ++ V HD S LD
Sbjct: 271 TKYVICVEHDLSVLD 285
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIVSHDQ 349
+ SGG R RV++ARAL + +L+LDE T+ LD + + L + KT+L+++H
Sbjct: 480 SLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRL 539
Query: 350 SFLDNVCNEIIHLDQQKL 367
S ++ +EI+ +D+ ++
Sbjct: 540 STIEQ-ADEILVVDEGEI 556
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 15/81 (18%)
Query: 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIW----LDNYLQGWKKTLLIVSHD 348
SGG R R+++ARA P +L+LDE T LD + LD+ ++G +T L+++H
Sbjct: 140 ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKG--RTTLVIAHR 197
Query: 349 QSFLDNVCNEIIHLDQQKLYY 369
S + +D K+Y+
Sbjct: 198 LSTI---------VDADKIYF 209
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 280 GFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK 339
G+ + +R K SGG + R+S+AR P +L+LDE T+ LDL + + L
Sbjct: 466 GYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS 524
Query: 340 K--TLLIVSHDQS 350
K T LIV+H S
Sbjct: 525 KDRTTLIVAHRLS 537
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 6/181 (3%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
I+++ +G + + IA G ++ L G NG GKTTLL + + + +++
Sbjct: 22 IQLDQIGRXKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLF 81
Query: 207 YCEQEVVADDLTAVESVLKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGAD 266
V V + V + D + +Y+++ D
Sbjct: 82 GKXPGKVGYSAETVRQHI-GFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDID----D 136
Query: 267 SAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN 326
A ++L +G S Q + S G + RV +ARAL +P +L+LDEP LD
Sbjct: 137 EIRNEAHQLLKLVGXSAKAQ-QYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFI 195
Query: 327 A 327
A
Sbjct: 196 A 196
>pdb|3QKR|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 179
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 12/87 (13%)
Query: 286 QDRATKNFSGGWRMRVSLA----RALYI--EPTLLLLDEPTNHLD----LNAVIWLDNYL 335
++R SGG R+ + LA +LY+ E +LL+LDEPT +LD + ++ YL
Sbjct: 82 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL 141
Query: 336 QGWKKTLLIVSHDQSFLDNVCNEIIHL 362
+ + +L VSHD+ L + + +I +
Sbjct: 142 KKIPQVIL-VSHDEE-LKDAADHVIRI 166
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 12/87 (13%)
Query: 286 QDRATKNFSGGWRMRVSLA----RALYI--EPTLLLLDEPTNHLD----LNAVIWLDNYL 335
++R SGG R+ + LA +LY+ E +LL+LDEPT +LD + ++ YL
Sbjct: 77 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL 136
Query: 336 QGWKKTLLIVSHDQSFLDNVCNEIIHL 362
+ + +L VSHD+ L + + +I +
Sbjct: 137 KKIPQVIL-VSHDEE-LKDAADHVIRI 161
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 271 RARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIW 330
+A +IL L S + DR SGG V + RAL P ++++DEP +
Sbjct: 133 KAFKILEFLKLSH-LYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHD 191
Query: 331 LDNYLQGWKK---TLLIVSHDQSFLDNVCNEIIHL 362
+ N++ K T LI+ H LD V N I HL
Sbjct: 192 IFNHVLELKAKGITFLIIEHR---LDIVLNYIDHL 223
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 271 RARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIW 330
+A +IL L S + DR SGG V + RAL P ++++DEP +
Sbjct: 133 KAFKILEFLKLSH-LYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHD 191
Query: 331 LDNYLQGWKK---TLLIVSHDQSFLDNVCNEIIHL 362
+ N++ K T LI+ H LD V N I HL
Sbjct: 192 IFNHVLELKAKGITFLIIEHR---LDIVLNYIDHL 223
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 68/167 (40%), Gaps = 12/167 (7%)
Query: 158 GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDL 217
GN + N + I+ G+R GL+G G GK+TLL R L I I + V+ D
Sbjct: 33 GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTEGEIQI-----DGVSWDS 86
Query: 218 TAVESVLKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGADSAEPRARRILA 277
+E KA + +EI++ +G S +
Sbjct: 87 ITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSV---IEQFPG 143
Query: 278 GLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
L F + D S G + + LAR++ + +LLLDEP+ HLD
Sbjct: 144 KLDF--VLVDGGCV-LSHGHKQLMCLARSVLSKAKILLLDEPSAHLD 187
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 12/99 (12%)
Query: 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHDQS 350
SGG R R+++ARAL + +L+LDE T+ LD + + L +K T L+++H S
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLS 540
Query: 351 FLDNVCNEIIHLD---------QQKLYYYKGNYSMFKKM 380
++ +EI+ ++ L ++G Y+ KM
Sbjct: 541 TIEK-ADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKM 578
>pdb|1F2T|B Chain B, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|D Chain D, Crystal Structure Of Rad50 Abc-Atpase
Length = 148
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 12/90 (13%)
Query: 286 QDRATKNFSGGWRMRVSLA----RALYI--EPTLLLLDEPTNHLD----LNAVIWLDNYL 335
++R SGG R+ + LA +LY+ E +LL+LDEPT +LD + ++ YL
Sbjct: 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL 110
Query: 336 QGWKKTLLIVSHDQSFLDNVCNEIIHLDQQ 365
+ + +L VSHD+ L + + +I + +
Sbjct: 111 KKIPQVIL-VSHDEE-LKDAADHVIRISLE 138
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 271 RARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIW 330
+A +IL L S + DR SGG V + RAL P ++++D+P +
Sbjct: 133 KAFKILEFLKLSH-LYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHD 191
Query: 331 LDNYLQGWKK---TLLIVSHDQSFLDNVCNEIIHL 362
+ N++ K T LI+ H LD V N I HL
Sbjct: 192 IFNHVLELKAKGITFLIIEHR---LDIVLNYIDHL 223
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
Length = 359
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 12/87 (13%)
Query: 286 QDRATKNFSGGWRMRVSLA----RALYI--EPTLLLLDEPTNHLD----LNAVIWLDNYL 335
++R SGG R+ + LA +LY+ E +LL+LDEPT +LD + ++ YL
Sbjct: 262 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL 321
Query: 336 QGWKKTLLIVSHDQSFLDNVCNEIIHL 362
+ + +L VSHD+ L + + +I +
Sbjct: 322 KKIPQVIL-VSHDEE-LKDAADHVIRI 346
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 78/195 (40%), Gaps = 37/195 (18%)
Query: 172 GRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD--LTAVESVLKADVK 229
G G++GPNG GKTT R + E+ AD+ +T + +L +
Sbjct: 294 GEIIGILGPNGIGKTTFARILVG----------------EITADEGSVTPEKQILSYKPQ 337
Query: 230 RTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRA 289
R ++ Q+ L+ ++ + + E +R L R ++
Sbjct: 338 RIFP----------NYDGTVQQYLENASKDALSTSSWFFEEVTKR----LNLHRLLESNV 383
Query: 290 TKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN----AVIWLDNYLQGWKKTLLIV 345
+ SGG ++ +A L E L +LD+P+++LD+ + + K I+
Sbjct: 384 N-DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFII 442
Query: 346 SHDQSFLDNVCNEII 360
HD S D + + II
Sbjct: 443 DHDLSIHDYIADRII 457
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQS 350
SGG R+ +A +L E + + D+P+++LD+ + + ++ K +++V HD
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLI 198
Query: 351 FLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQK 384
LD + ++IH+ +Y Y K YA +
Sbjct: 199 VLDYLT-DLIHI----IYGESSVYGRVSKSYAAR 227
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 12/87 (13%)
Query: 286 QDRATKNFSGGWRMRVSLA----RALYI--EPTLLLLDEPTNHLD----LNAVIWLDNYL 335
++R SGG R+ + LA +LY+ E +LL+LDEPT +LD + ++ YL
Sbjct: 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL 301
Query: 336 QGWKKTLLIVSHDQSFLDNVCNEIIHL 362
+ + +L VSHD+ L + + +I +
Sbjct: 302 KKIPQVIL-VSHDEE-LKDAADHVIRI 326
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
SGG R R+++ARAL + +L+LDE T+ LD
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALD 512
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 104/252 (41%), Gaps = 31/252 (12%)
Query: 131 MEKTGGQLAALENAVDIKVENFSISAKGN---DLFVNANLLIANGRRYGLVGPNGHGKTT 187
M G LA L +K ++ S + + + + G+ LVGPNG GK+T
Sbjct: 1 MSPLSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKST 60
Query: 188 LLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTXXXXXXXXXXXXDFSS 247
+ + ++L P +L + +V D + + + A V + +
Sbjct: 61 VAALL--QNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAA-VGQEPLLFGRSFRENIAYGL 117
Query: 248 EQQEQLKEIYEELKAIGADSAEPRARRILAGL--GFSRAMQDRATKNFSGGWRMRVSLAR 305
+ + EE+ A+ +S A ++G G+ + + + + G R V+LAR
Sbjct: 118 TRTPTM----EEITAVAMESG---AHDFISGFPQGYDTEVGETGNQ-LAVGQRQAVALAR 169
Query: 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQ---GW-KKTLLIVS---------HDQSFL 352
AL +P LL+LD T+ LD + + L W +T+L+++ H FL
Sbjct: 170 ALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFL 229
Query: 353 --DNVCNEIIHL 362
+VC + HL
Sbjct: 230 KEGSVCEQGTHL 241
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 63/182 (34%), Gaps = 53/182 (29%)
Query: 158 GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR----DLKVPPNIDILYCEQEVV 213
G + + N I G+ + G G GKT+LL I + K+ + I +C Q
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQ--- 106
Query: 214 ADDLTAVESVLKADVKRTXXXXXXXXXXXXDFSSEQQEQLKEIYEELKAIGADSAEPRAR 273
FS +KE IG E R R
Sbjct: 107 -------------------------------FSWIMPGTIKE-----NIIGVSYDEYRYR 130
Query: 274 RILAGLGFSRAMQDRATKN----------FSGGWRMRVSLARALYIEPTLLLLDEPTNHL 323
++ + A K+ S G + ++SLARA+Y + L LLD P +L
Sbjct: 131 SVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYL 190
Query: 324 DL 325
D+
Sbjct: 191 DV 192
>pdb|1US8|B Chain B, The Rad50 Signature Motif: Essential To Atp Binding And
Biological Function
Length = 144
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 11/78 (14%)
Query: 286 QDRATKNFSGGWRMRVSLA----RALYI--EPTLLLLDEPTNHLD----LNAVIWLDNYL 335
++R GG R+ + LA +LY+ E +LL+LDEPT +LD + ++ YL
Sbjct: 47 KERPLTFLRGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL 106
Query: 336 QGWKKTLLIVSHDQSFLD 353
+ + +L VSHD+ D
Sbjct: 107 KKIPQVIL-VSHDEELKD 123
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 278 GLGFSRAMQDRATKNFSGGWRMRVSLARAL---YIEPTLLLLDEPTNHLDLNAVIWLDNY 334
GLG+ R Q T SGG RV LA L T+ +LDEPT L + + L N
Sbjct: 851 GLGYVRLGQPAPT--LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNV 908
Query: 335 LQGW---KKTLLIVSHD 348
+ G T++++ H+
Sbjct: 909 INGLVDKGNTVIVIEHN 925
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL 325
S G + ++SLARA+Y + L LLD P +LD+
Sbjct: 160 TLSEGQQAKISLARAVYKDADLYLLDSPFGYLDV 193
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 292 NFSGGWRMRVSLARALYIEPTLL-------LLDEPTNHLDLNAVIWLDNYLQGWKKT--L 342
N SGG ++ V+L+ L I L+ +LDEPT +LD N L + K +
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339
Query: 343 LIVSHDQSFLDNVCNEIIHL 362
+I++H + L++V + II++
Sbjct: 340 IIITHHRE-LEDVADVIINV 358
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Query: 288 RATKNFSGGWRMRVSLARA-LYIEPT------LLLLDEPTNHLDLNAVIWLDNYLQG-WK 339
R+T SGG RV LA L I P LLLLDEP N LD+ LD L +
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQ 181
Query: 340 KTLLIV--SHD 348
+ L IV SHD
Sbjct: 182 QGLAIVXSSHD 192
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
Query: 288 RATKNFSGGWRMRVSLARA-LYIEPT------LLLLDEPTNHLDLNAVIWLDNYLQGWKK 340
R+T SGG RV LA L I P LLLLDEP N LD+ LD L +
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQ 181
Query: 341 TLLIV---SHD 348
L + SHD
Sbjct: 182 QGLAIVXSSHD 192
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 73/187 (39%), Gaps = 40/187 (21%)
Query: 177 LVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTXXXXX 236
LVGPNG GK+TLL +A I + Q + A S K + R
Sbjct: 31 LVGPNGAGKSTLLARMAG---MTSGKGSIQFAGQPLEA------WSATKLALHRA----- 76
Query: 237 XXXXXXXDFSSEQQEQ--LKEIYEELKAIGADSAEPRARRILAGLGFSRAMQD---RATK 291
+ S+QQ ++ L D +AG + A+ D R+T
Sbjct: 77 --------YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAG---ALALDDKLGRSTN 125
Query: 292 NFSGGWRMRVSLARA-LYIEPT------LLLLDEPTNHLDLNAVIWLDNYLQGWKK---T 341
SGG RV LA L I P LLLLD+P N LD+ LD L +
Sbjct: 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQGLA 185
Query: 342 LLIVSHD 348
+++ SHD
Sbjct: 186 IVMSSHD 192
>pdb|2Z4R|A Chain A, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
pdb|2Z4R|B Chain B, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
pdb|2Z4R|C Chain C, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
pdb|2Z4S|A Chain A, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
Length = 440
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 146 DIKVENFSISAKGNDLFVNANLLIA-NGRRYG---LVGPNGHGKTTLLRHIASRDLKVPP 201
D ENF + GN +A L +A + RY + G G GKT LL+ I + ++ P
Sbjct: 101 DYTFENFVVGP-GNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEP 159
Query: 202 NIDILYCEQEVVADDLT 218
++ ++Y E +DL
Sbjct: 160 DLRVMYITSEKFLNDLV 176
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 166 NLLIANGRRYGLVGPNGHGKTTLLRHIAS 194
+ I G GPNG GKTTLL+ I++
Sbjct: 29 TMTIEKGNVVNFHGPNGIGKTTLLKTIST 57
>pdb|2BOL|A Chain A, Crystal Structure And Assembly Of Tsp36, A Metazoan Small
Heat Shock Protein
pdb|2BOL|B Chain B, Crystal Structure And Assembly Of Tsp36, A Metazoan Small
Heat Shock Protein
Length = 314
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 13/80 (16%)
Query: 143 NAVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN 202
N + K E +I A N L V A +A G + R + +PP+
Sbjct: 119 NVKNFKAEEITIKADKNKLVVRAQKSVACG-------------DAAMSESVGRSIPLPPS 165
Query: 203 IDILYCEQEVVADDLTAVES 222
+D + + + DD+ +E+
Sbjct: 166 VDRNHIQATITTDDVLVIEA 185
>pdb|1UIK|A Chain A, Crystal Structure Of Soybean Beta-Conglycinin Alpha Prime
Homotrimer
pdb|1UIK|B Chain B, Crystal Structure Of Soybean Beta-Conglycinin Alpha Prime
Homotrimer
pdb|1UIK|C Chain C, Crystal Structure Of Soybean Beta-Conglycinin Alpha Prime
Homotrimer
Length = 418
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 57/138 (41%), Gaps = 33/138 (23%)
Query: 287 DRATKNFSGGWRMRVSLARALYI-------EPTLLLLDEPTN------HLDLNAVIWLDN 333
DR + N G +RV Y+ ++ L P N L++ +
Sbjct: 86 DRDSYNLQSGDALRVPAGTTYYVVNPDNDENLRMITLAIPVNKPGRFESFFLSSTQAQQS 145
Query: 334 YLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKE-- 391
YLQG+ K +L S+D F + N+++ ++ Q+ +ER++E
Sbjct: 146 YLQGFSKNILEASYDTKFEE--INKVLFGREEG---------------QQQGEERLQESV 188
Query: 392 -FEKQEKRIKELKAHGQS 408
E +K+I+EL H +S
Sbjct: 189 IVEISKKQIRELSKHAKS 206
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,921,182
Number of Sequences: 62578
Number of extensions: 468998
Number of successful extensions: 1624
Number of sequences better than 100.0: 120
Number of HSP's better than 100.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1407
Number of HSP's gapped (non-prelim): 233
length of query: 548
length of database: 14,973,337
effective HSP length: 104
effective length of query: 444
effective length of database: 8,465,225
effective search space: 3758559900
effective search space used: 3758559900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)