Query psy11936
Match_columns 548
No_of_seqs 754 out of 3747
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 22:47:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11936.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11936hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0066|consensus 100.0 4E-76 8.7E-81 603.8 28.4 438 92-534 215-659 (807)
2 COG0488 Uup ATPase components 100.0 1.1E-67 2.4E-72 576.0 37.2 382 145-538 2-398 (530)
3 PRK10636 putative ABC transpor 100.0 1.4E-59 3.1E-64 528.4 41.2 370 146-534 1-384 (638)
4 PLN03073 ABC transporter F fam 100.0 1.7E-58 3.7E-63 523.0 49.1 381 143-534 174-581 (718)
5 KOG0927|consensus 100.0 2.1E-59 4.6E-64 493.5 33.0 382 144-534 73-462 (614)
6 PRK11147 ABC transporter ATPas 100.0 1.3E-56 2.9E-61 504.6 44.0 372 146-534 3-391 (635)
7 KOG0062|consensus 100.0 2.5E-58 5.5E-63 483.1 20.5 351 144-534 78-436 (582)
8 PRK15064 ABC transporter ATP-b 100.0 6.1E-52 1.3E-56 458.1 42.4 377 146-535 1-392 (530)
9 PRK11819 putative ABC transpor 100.0 1.4E-51 3E-56 457.6 42.4 370 146-534 6-396 (556)
10 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.5E-51 5.5E-56 455.2 42.0 370 146-534 4-394 (552)
11 COG1126 GlnQ ABC-type polar am 100.0 5.2E-50 1.1E-54 382.9 20.8 221 146-379 2-226 (240)
12 TIGR03269 met_CoM_red_A2 methy 100.0 5.2E-47 1.1E-51 418.0 26.6 321 147-538 1-378 (520)
13 PRK10938 putative molybdenum t 100.0 4.3E-46 9.3E-51 407.8 26.2 318 146-535 3-346 (490)
14 PRK15134 microcin C ABC transp 100.0 5.7E-46 1.2E-50 410.5 26.7 325 146-534 5-371 (529)
15 PRK13549 xylose transporter AT 100.0 4E-46 8.7E-51 409.6 23.1 316 146-534 5-347 (506)
16 PRK10261 glutathione transport 100.0 1.7E-45 3.7E-50 413.7 26.4 354 145-534 11-410 (623)
17 COG1125 OpuBA ABC-type proline 100.0 1.5E-45 3.3E-50 359.0 20.5 218 146-376 1-223 (309)
18 TIGR02633 xylG D-xylose ABC tr 100.0 2E-45 4.3E-50 403.5 24.1 317 146-534 1-345 (500)
19 PRK09700 D-allose transporter 100.0 1.7E-45 3.7E-50 405.0 23.3 316 146-534 5-347 (510)
20 PRK15439 autoinducer 2 ABC tra 100.0 4.3E-45 9.4E-50 401.8 24.9 314 146-534 11-347 (510)
21 COG1123 ATPase components of v 100.0 4.3E-45 9.2E-50 393.0 24.0 322 146-524 5-354 (539)
22 COG1135 AbcC ABC-type metal io 100.0 4.2E-45 9E-50 365.2 20.8 225 146-381 1-234 (339)
23 PRK10762 D-ribose transporter 100.0 6.8E-45 1.5E-49 399.5 22.8 310 146-534 4-336 (501)
24 COG1120 FepC ABC-type cobalami 100.0 2.6E-45 5.6E-50 365.2 16.5 219 146-377 2-227 (258)
25 PRK10982 galactose/methyl gala 100.0 1.1E-44 2.4E-49 396.8 21.4 309 149-534 1-332 (491)
26 PRK11288 araG L-arabinose tran 100.0 2.3E-44 4.9E-49 395.3 23.6 312 146-534 4-337 (501)
27 COG1127 Ttg2A ABC-type transpo 100.0 3.9E-44 8.3E-49 347.4 20.0 224 145-378 7-234 (263)
28 COG1124 DppF ABC-type dipeptid 100.0 3.2E-44 7E-49 349.2 18.9 215 145-371 2-224 (252)
29 COG1116 TauB ABC-type nitrate/ 100.0 5.3E-44 1.2E-48 350.3 18.0 201 146-365 3-207 (248)
30 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 2.6E-43 5.6E-48 349.3 19.2 216 145-376 3-224 (254)
31 COG1136 SalX ABC-type antimicr 100.0 2.9E-42 6.3E-47 337.2 22.2 212 147-368 2-221 (226)
32 COG3842 PotA ABC-type spermidi 100.0 1.5E-42 3.2E-47 359.3 17.3 217 146-380 5-228 (352)
33 COG3638 ABC-type phosphate/pho 100.0 4E-42 8.7E-47 332.5 18.8 221 145-376 2-234 (258)
34 PRK13409 putative ATPase RIL; 100.0 6.8E-42 1.5E-46 381.1 23.3 313 151-536 78-411 (590)
35 cd03261 ABC_Org_Solvent_Resist 100.0 1.1E-41 2.4E-46 338.4 21.8 220 147-377 1-224 (235)
36 COG0488 Uup ATPase components 100.0 2.4E-41 5.3E-46 369.2 26.5 201 145-381 320-527 (530)
37 COG1118 CysA ABC-type sulfate/ 100.0 2.1E-42 4.5E-47 345.1 16.0 221 145-378 1-227 (345)
38 COG3839 MalK ABC-type sugar tr 100.0 4E-42 8.6E-47 354.4 16.7 218 146-379 3-224 (338)
39 COG1117 PstB ABC-type phosphat 100.0 1E-41 2.2E-46 324.9 17.7 227 146-382 7-241 (253)
40 TIGR00960 3a0501s02 Type II (G 100.0 3.1E-41 6.6E-46 330.8 21.7 211 146-367 1-216 (216)
41 TIGR02314 ABC_MetN D-methionin 100.0 3.3E-41 7.1E-46 352.6 22.6 220 146-377 1-228 (343)
42 PRK13537 nodulation ABC transp 100.0 5.5E-41 1.2E-45 346.6 23.3 217 146-378 7-226 (306)
43 COG1131 CcmA ABC-type multidru 100.0 6.1E-41 1.3E-45 344.0 22.7 217 146-378 4-225 (293)
44 cd03259 ABC_Carb_Solutes_like 100.0 4.1E-41 8.9E-46 329.2 19.9 208 147-370 1-212 (213)
45 COG1122 CbiO ABC-type cobalt t 100.0 2.2E-41 4.8E-46 335.6 17.8 219 145-378 2-228 (235)
46 COG2884 FtsE Predicted ATPase 100.0 1.4E-41 3.1E-46 318.6 14.7 212 146-371 1-219 (223)
47 PRK14250 phosphate ABC transpo 100.0 2.8E-40 6.1E-45 329.8 23.9 215 145-377 2-220 (241)
48 cd03265 ABC_DrrA DrrA is the A 100.0 1.5E-40 3.3E-45 327.0 21.6 212 147-374 1-216 (220)
49 TIGR01288 nodI ATP-binding ABC 100.0 2E-40 4.2E-45 342.0 22.9 217 145-377 3-222 (303)
50 PRK13536 nodulation factor exp 100.0 2.2E-40 4.8E-45 346.5 22.9 217 145-377 40-259 (340)
51 COG4555 NatA ABC-type Na+ tran 100.0 8.1E-41 1.8E-45 316.0 17.4 215 146-376 1-219 (245)
52 TIGR03522 GldA_ABC_ATP gliding 100.0 3.9E-40 8.4E-45 339.6 23.9 217 146-378 2-220 (301)
53 cd03301 ABC_MalK_N The N-termi 100.0 2.1E-40 4.6E-45 324.0 20.7 208 147-370 1-212 (213)
54 cd03260 ABC_PstB_phosphate_tra 100.0 2.9E-40 6.3E-45 326.3 21.6 211 147-370 1-221 (227)
55 PRK13651 cobalt transporter AT 100.0 3.8E-40 8.3E-45 340.1 23.4 225 146-377 2-253 (305)
56 PRK11432 fbpC ferric transport 100.0 2.1E-40 4.7E-45 347.8 21.8 213 146-375 6-222 (351)
57 cd03256 ABC_PhnC_transporter A 100.0 4.5E-40 9.7E-45 327.4 23.0 220 147-377 1-232 (241)
58 TIGR03265 PhnT2 putative 2-ami 100.0 2.3E-40 4.9E-45 348.0 21.8 216 146-377 4-223 (353)
59 PRK09493 glnQ glutamine ABC tr 100.0 4.7E-40 1E-44 327.6 22.9 221 146-378 1-224 (240)
60 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 2.2E-40 4.7E-45 325.0 20.1 210 147-367 1-218 (218)
61 PRK11831 putative ABC transpor 100.0 4.9E-40 1.1E-44 333.5 22.9 221 146-377 7-231 (269)
62 cd03266 ABC_NatA_sodium_export 100.0 2.2E-40 4.9E-45 325.0 19.6 210 146-370 1-217 (218)
63 PRK10636 putative ABC transpor 100.0 1.2E-39 2.7E-44 366.9 28.3 206 145-379 311-517 (638)
64 PRK11650 ugpC glycerol-3-phosp 100.0 2.8E-40 6E-45 347.7 21.5 214 146-376 3-221 (356)
65 TIGR02673 FtsE cell division A 100.0 4.4E-40 9.6E-45 322.0 21.3 210 146-366 1-214 (214)
66 cd03264 ABC_drug_resistance_li 100.0 3E-40 6.5E-45 322.7 20.0 208 147-370 1-210 (211)
67 cd03225 ABC_cobalt_CbiO_domain 100.0 4.4E-40 9.5E-45 321.3 20.9 205 149-366 2-211 (211)
68 PRK13647 cbiO cobalt transport 100.0 1.1E-39 2.3E-44 332.0 24.5 218 146-377 4-225 (274)
69 TIGR01978 sufC FeS assembly AT 100.0 7.2E-40 1.6E-44 326.3 22.8 221 147-377 1-232 (243)
70 PRK13637 cbiO cobalt transport 100.0 7.8E-40 1.7E-44 335.1 23.6 219 146-377 2-232 (287)
71 cd03296 ABC_CysA_sulfate_impor 100.0 4E-40 8.8E-45 328.1 20.9 215 146-377 2-224 (239)
72 cd03226 ABC_cobalt_CbiO_domain 100.0 4.7E-40 1E-44 320.0 20.8 200 149-368 2-205 (205)
73 PRK11264 putative amino-acid A 100.0 6.8E-40 1.5E-44 328.3 22.4 225 146-377 3-231 (250)
74 cd03295 ABC_OpuCA_Osmoprotecti 100.0 7.6E-40 1.6E-44 326.7 22.6 217 147-377 1-223 (242)
75 PRK11124 artP arginine transpo 100.0 9E-40 1.9E-44 326.0 23.1 222 146-378 2-229 (242)
76 cd03219 ABC_Mj1267_LivG_branch 100.0 5E-40 1.1E-44 326.3 21.0 218 147-377 1-230 (236)
77 PRK11153 metN DL-methionine tr 100.0 6.7E-40 1.5E-44 343.6 23.0 219 146-376 1-227 (343)
78 PRK10851 sulfate/thiosulfate t 100.0 4.5E-40 9.7E-45 345.8 21.7 216 145-376 1-223 (353)
79 TIGR02315 ABC_phnC phosphonate 100.0 7.7E-40 1.7E-44 326.3 22.3 221 146-377 1-233 (243)
80 cd03258 ABC_MetN_methionine_tr 100.0 1.1E-39 2.3E-44 323.5 23.0 220 146-377 1-228 (233)
81 cd03257 ABC_NikE_OppD_transpor 100.0 8.2E-40 1.8E-44 322.7 22.1 214 146-369 1-226 (228)
82 cd03262 ABC_HisP_GlnQ_permease 100.0 4.1E-40 9E-45 321.7 19.7 210 147-367 1-213 (213)
83 PRK10619 histidine/lysine/argi 100.0 1.1E-39 2.3E-44 328.6 22.9 226 146-377 5-239 (257)
84 PRK13643 cbiO cobalt transport 100.0 1.2E-39 2.6E-44 333.9 23.6 220 146-377 1-231 (288)
85 PRK11147 ABC transporter ATPas 100.0 6.1E-40 1.3E-44 369.6 23.2 210 145-379 318-528 (635)
86 PRK11308 dppF dipeptide transp 100.0 1E-39 2.2E-44 340.0 23.0 219 146-371 5-237 (327)
87 cd03293 ABC_NrtD_SsuB_transpor 100.0 7.9E-40 1.7E-44 321.9 21.0 205 147-370 1-215 (220)
88 PRK13646 cbiO cobalt transport 100.0 1.8E-39 3.9E-44 332.3 24.4 219 146-377 2-233 (286)
89 cd03269 ABC_putative_ATPase Th 100.0 7.8E-40 1.7E-44 319.5 20.7 206 147-370 1-209 (210)
90 PRK15079 oligopeptide ABC tran 100.0 1.1E-39 2.5E-44 340.0 23.3 224 145-376 7-248 (331)
91 PRK13641 cbiO cobalt transport 100.0 1.7E-39 3.7E-44 332.6 24.0 222 146-377 2-232 (287)
92 PRK11022 dppD dipeptide transp 100.0 1E-39 2.2E-44 339.9 22.5 225 146-375 3-239 (326)
93 cd03268 ABC_BcrA_bacitracin_re 100.0 9E-40 1.9E-44 318.6 20.6 203 147-369 1-206 (208)
94 PRK09536 btuD corrinoid ABC tr 100.0 5.4E-40 1.2E-44 349.6 20.6 218 146-377 3-226 (402)
95 PRK13634 cbiO cobalt transport 100.0 1.8E-39 4E-44 332.9 23.7 217 146-377 2-233 (290)
96 PRK10908 cell division protein 100.0 1.1E-39 2.5E-44 321.2 21.2 214 146-370 1-218 (222)
97 cd03218 ABC_YhbG The ABC trans 100.0 1.2E-39 2.6E-44 322.8 21.5 217 147-377 1-220 (232)
98 PRK11000 maltose/maltodextrin 100.0 8.3E-40 1.8E-44 345.9 21.5 214 146-376 3-220 (369)
99 PRK09452 potA putrescine/sperm 100.0 1E-39 2.2E-44 345.2 21.9 216 146-377 14-233 (375)
100 TIGR03258 PhnT 2-aminoethylpho 100.0 8.5E-40 1.8E-44 344.5 21.2 213 146-375 5-224 (362)
101 cd03292 ABC_FtsE_transporter F 100.0 1.4E-39 3.1E-44 318.2 21.3 210 147-367 1-214 (214)
102 TIGR02769 nickel_nikE nickel i 100.0 3.2E-39 6.8E-44 326.8 24.2 224 146-377 2-238 (265)
103 PRK11248 tauB taurine transpor 100.0 1.2E-39 2.7E-44 328.2 21.0 206 146-370 1-212 (255)
104 cd03263 ABC_subfamily_A The AB 100.0 1.2E-39 2.6E-44 320.3 20.2 213 147-375 1-217 (220)
105 PRK13638 cbiO cobalt transport 100.0 2.3E-39 4.9E-44 328.9 22.5 216 146-377 1-223 (271)
106 PRK15112 antimicrobial peptide 100.0 2.5E-39 5.5E-44 327.9 22.8 222 146-378 4-238 (267)
107 PRK11231 fecE iron-dicitrate t 100.0 2.4E-39 5.2E-44 325.6 22.4 218 146-377 2-225 (255)
108 TIGR00972 3a0107s01c2 phosphat 100.0 3.4E-39 7.4E-44 322.9 23.3 217 146-377 1-230 (247)
109 TIGR02211 LolD_lipo_ex lipopro 100.0 2.5E-39 5.3E-44 318.2 21.7 211 147-368 2-220 (221)
110 PRK11701 phnK phosphonate C-P 100.0 3.5E-39 7.5E-44 325.1 23.2 225 146-377 6-239 (258)
111 PRK13649 cbiO cobalt transport 100.0 4.4E-39 9.5E-44 328.2 24.1 219 146-377 2-232 (280)
112 PRK10895 lipopolysaccharide AB 100.0 2.6E-39 5.7E-44 322.5 21.9 218 146-377 3-224 (241)
113 PRK14247 phosphate ABC transpo 100.0 3.3E-39 7.1E-44 323.5 22.5 220 146-377 3-232 (250)
114 PRK14269 phosphate ABC transpo 100.0 4.6E-39 1E-43 322.0 23.3 217 146-374 2-226 (246)
115 PRK15093 antimicrobial peptide 100.0 4.6E-39 9.9E-44 335.6 24.1 226 146-376 3-245 (330)
116 PRK13631 cbiO cobalt transport 100.0 3.7E-39 8E-44 334.8 23.1 222 146-377 21-263 (320)
117 PRK10584 putative ABC transpor 100.0 4.4E-39 9.6E-44 318.1 22.6 213 146-369 6-226 (228)
118 PRK11247 ssuB aliphatic sulfon 100.0 2.4E-39 5.2E-44 326.5 21.0 201 145-370 11-215 (257)
119 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 4.2E-39 9.1E-44 320.2 22.5 215 146-377 1-219 (236)
120 cd03224 ABC_TM1139_LivF_branch 100.0 3.6E-39 7.9E-44 317.0 21.8 214 147-376 1-218 (222)
121 TIGR01188 drrA daunorubicin re 100.0 3E-39 6.4E-44 333.1 22.1 208 154-377 1-211 (302)
122 TIGR03005 ectoine_ehuA ectoine 100.0 4E-39 8.6E-44 323.4 22.1 222 147-377 1-234 (252)
123 COG0444 DppD ABC-type dipeptid 100.0 1.8E-39 3.9E-44 328.4 19.6 227 147-378 2-243 (316)
124 TIGR03411 urea_trans_UrtD urea 100.0 4.3E-39 9.3E-44 320.9 22.0 218 146-377 2-229 (242)
125 PRK14242 phosphate transporter 100.0 7.9E-39 1.7E-43 321.3 23.7 223 144-377 4-235 (253)
126 PRK13652 cbiO cobalt transport 100.0 9.4E-39 2E-43 325.5 24.4 219 146-378 3-226 (277)
127 COG4598 HisP ABC-type histidin 100.0 1.3E-39 2.9E-44 302.5 16.2 229 146-380 6-243 (256)
128 cd03214 ABC_Iron-Siderophores_ 100.0 1.2E-38 2.6E-43 304.5 23.3 174 148-369 1-178 (180)
129 PRK13548 hmuV hemin importer A 100.0 6.7E-39 1.5E-43 323.3 22.8 217 146-377 2-228 (258)
130 PRK13636 cbiO cobalt transport 100.0 8.9E-39 1.9E-43 326.7 23.9 219 146-378 5-230 (283)
131 cd03235 ABC_Metallic_Cations A 100.0 9.6E-40 2.1E-44 319.6 16.0 203 149-367 2-210 (213)
132 PRK11629 lolD lipoprotein tran 100.0 7.5E-39 1.6E-43 317.8 22.5 214 146-370 5-226 (233)
133 TIGR02323 CP_lyasePhnK phospho 100.0 1E-38 2.3E-43 320.4 23.5 225 146-377 3-236 (253)
134 PRK09473 oppD oligopeptide tra 100.0 7.1E-39 1.5E-43 334.0 22.7 225 146-377 12-249 (330)
135 PRK13650 cbiO cobalt transport 100.0 1.4E-38 3E-43 324.7 24.2 217 146-377 4-227 (279)
136 PRK13645 cbiO cobalt transport 100.0 8.7E-39 1.9E-43 327.6 22.7 218 146-376 6-237 (289)
137 PRK14273 phosphate ABC transpo 100.0 1.1E-38 2.4E-43 320.5 23.1 221 146-377 7-236 (254)
138 PRK14239 phosphate transporter 100.0 1.2E-38 2.5E-43 319.7 23.1 218 146-376 5-233 (252)
139 PRK10575 iron-hydroxamate tran 100.0 5.2E-39 1.1E-43 325.2 20.7 218 146-377 11-235 (265)
140 COG0411 LivG ABC-type branched 100.0 1.7E-39 3.6E-44 316.5 16.2 219 146-377 4-237 (250)
141 PRK14245 phosphate ABC transpo 100.0 1.5E-38 3.2E-43 318.9 23.5 219 146-377 3-232 (250)
142 PRK11607 potG putrescine trans 100.0 2.3E-39 5.1E-44 342.8 18.5 216 146-377 19-238 (377)
143 PRK14241 phosphate transporter 100.0 1E-38 2.2E-43 321.7 22.2 220 146-377 4-240 (258)
144 PRK09984 phosphonate/organopho 100.0 1.1E-38 2.4E-43 322.1 22.5 223 146-377 4-240 (262)
145 PRK14267 phosphate ABC transpo 100.0 1.3E-38 2.7E-43 319.8 22.2 220 146-377 4-235 (253)
146 TIGR03873 F420-0_ABC_ATP propo 100.0 2E-38 4.3E-43 319.2 23.6 217 147-377 2-224 (256)
147 PRK14248 phosphate ABC transpo 100.0 1.8E-38 3.9E-43 321.7 23.4 221 146-377 21-250 (268)
148 PRK14268 phosphate ABC transpo 100.0 1.2E-38 2.6E-43 321.2 21.8 220 146-376 12-239 (258)
149 PRK14240 phosphate transporter 100.0 2.2E-38 4.9E-43 317.4 23.5 218 146-376 3-231 (250)
150 TIGR03410 urea_trans_UrtE urea 100.0 1.8E-38 3.8E-43 314.2 22.4 215 147-377 1-219 (230)
151 PRK11819 putative ABC transpor 100.0 1.6E-38 3.5E-43 353.1 24.6 212 145-381 323-535 (556)
152 cd03294 ABC_Pro_Gly_Bertaine T 100.0 6.8E-39 1.5E-43 325.2 19.8 219 148-377 26-248 (269)
153 PRK11300 livG leucine/isoleuci 100.0 1.6E-38 3.6E-43 319.2 22.2 219 146-377 5-241 (255)
154 PRK13639 cbiO cobalt transport 100.0 3.2E-38 6.9E-43 321.3 24.5 220 146-377 1-224 (275)
155 PRK10253 iron-enterobactin tra 100.0 2E-38 4.3E-43 321.0 22.8 218 146-377 7-231 (265)
156 PRK14235 phosphate transporter 100.0 3.2E-38 7E-43 319.8 24.3 221 146-377 19-249 (267)
157 COG1123 ATPase components of v 100.0 4.6E-39 1E-43 346.4 19.0 226 144-377 278-518 (539)
158 PRK10744 pstB phosphate transp 100.0 2.6E-38 5.7E-43 319.1 23.4 220 146-377 13-242 (260)
159 PRK14251 phosphate ABC transpo 100.0 2.9E-38 6.3E-43 316.8 23.0 219 146-375 4-231 (251)
160 PRK13635 cbiO cobalt transport 100.0 3.4E-38 7.4E-43 321.8 23.8 217 146-377 5-227 (279)
161 PRK14256 phosphate ABC transpo 100.0 2.2E-38 4.9E-43 317.9 22.0 223 146-377 4-234 (252)
162 PRK09580 sufC cysteine desulfu 100.0 3.2E-38 6.9E-43 315.6 23.0 219 146-375 1-231 (248)
163 PRK11614 livF leucine/isoleuci 100.0 1.4E-38 3E-43 316.5 20.2 216 146-377 5-224 (237)
164 PRK14255 phosphate ABC transpo 100.0 3.1E-38 6.8E-43 316.7 22.6 223 146-378 5-236 (252)
165 PRK10247 putative ABC transpor 100.0 2.1E-38 4.5E-43 313.2 21.0 211 146-375 7-223 (225)
166 PRK13644 cbiO cobalt transport 100.0 3.7E-38 8E-43 320.7 23.2 217 146-377 1-222 (274)
167 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.5E-38 3.3E-43 310.6 19.2 204 147-369 1-209 (211)
168 PRK10070 glycine betaine trans 100.0 2.9E-38 6.3E-43 336.1 23.0 218 149-377 31-252 (400)
169 PRK14253 phosphate ABC transpo 100.0 6.1E-38 1.3E-42 314.1 24.0 219 146-377 3-231 (249)
170 PRK14274 phosphate ABC transpo 100.0 5.3E-38 1.1E-42 316.6 23.5 217 146-377 12-241 (259)
171 PRK14270 phosphate ABC transpo 100.0 6.9E-38 1.5E-42 314.2 23.8 218 146-376 4-232 (251)
172 cd03300 ABC_PotA_N PotA is an 100.0 3.3E-38 7.2E-43 313.1 21.1 213 147-376 1-217 (232)
173 PRK14272 phosphate ABC transpo 100.0 3.4E-38 7.4E-43 316.3 21.3 220 146-377 4-234 (252)
174 TIGR01186 proV glycine betaine 100.0 1.2E-38 2.6E-43 335.3 18.8 213 154-377 1-217 (363)
175 PRK14271 phosphate ABC transpo 100.0 1E-37 2.2E-42 317.7 25.0 221 145-377 20-249 (276)
176 PRK14262 phosphate ABC transpo 100.0 9.2E-38 2E-42 313.0 24.2 221 146-377 3-232 (250)
177 PRK10419 nikE nickel transport 100.0 5.6E-38 1.2E-42 318.3 22.8 218 146-370 3-233 (268)
178 PRK14261 phosphate ABC transpo 100.0 6.3E-38 1.4E-42 314.9 23.0 220 145-377 5-235 (253)
179 CHL00131 ycf16 sulfate ABC tra 100.0 4.7E-38 1E-42 315.3 21.9 221 145-375 6-237 (252)
180 PRK13640 cbiO cobalt transport 100.0 7E-38 1.5E-42 319.9 23.3 217 146-377 5-230 (282)
181 PRK14237 phosphate transporter 100.0 6.2E-38 1.3E-42 317.8 22.8 218 145-377 19-249 (267)
182 TIGR03740 galliderm_ABC gallid 100.0 4.5E-38 9.7E-43 310.1 21.0 203 147-371 1-206 (223)
183 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.2E-37 2.5E-42 346.0 26.8 212 145-381 321-533 (552)
184 cd03245 ABCC_bacteriocin_expor 100.0 4.7E-38 1E-42 308.9 20.8 202 147-370 3-219 (220)
185 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 4E-38 8.7E-43 311.2 20.3 198 147-370 23-223 (224)
186 PRK10771 thiQ thiamine transpo 100.0 4.4E-38 9.5E-43 312.1 20.5 213 146-378 1-218 (232)
187 PRK15064 ABC transporter ATP-b 100.0 1.1E-37 2.3E-42 344.8 25.6 209 145-380 318-526 (530)
188 PRK13547 hmuV hemin importer A 100.0 7.2E-38 1.6E-42 318.3 22.2 217 146-376 1-241 (272)
189 PRK13632 cbiO cobalt transport 100.0 1E-37 2.3E-42 316.8 22.9 216 146-376 7-228 (271)
190 COG4172 ABC-type uncharacteriz 100.0 4.8E-38 1E-42 322.3 20.0 327 145-534 5-360 (534)
191 PRK13648 cbiO cobalt transport 100.0 8E-38 1.7E-42 317.2 21.3 217 146-377 7-229 (269)
192 PRK14275 phosphate ABC transpo 100.0 1.4E-37 3E-42 318.4 23.2 221 145-376 38-267 (286)
193 cd03254 ABCC_Glucan_exporter_l 100.0 1.9E-37 4.1E-42 306.5 22.9 210 146-378 2-225 (229)
194 COG4161 ArtP ABC-type arginine 100.0 1.2E-37 2.5E-42 285.1 19.3 228 146-381 2-232 (242)
195 cd03299 ABC_ModC_like Archeal 100.0 1.6E-37 3.5E-42 308.8 21.9 213 147-377 1-217 (235)
196 PRK13633 cobalt transporter AT 100.0 1.9E-37 4.1E-42 316.3 22.9 217 146-377 4-231 (280)
197 PRK14249 phosphate ABC transpo 100.0 2E-37 4.2E-42 311.0 22.5 216 146-376 4-232 (251)
198 PRK14259 phosphate ABC transpo 100.0 2E-37 4.2E-42 314.5 22.6 207 145-364 12-228 (269)
199 PRK14236 phosphate transporter 100.0 2.2E-37 4.7E-42 314.6 22.9 219 146-377 25-254 (272)
200 PRK14254 phosphate ABC transpo 100.0 3.3E-37 7.2E-42 315.4 24.3 220 145-376 38-266 (285)
201 COG4152 ABC-type uncharacteriz 100.0 3.8E-38 8.3E-43 305.4 16.3 215 146-379 2-219 (300)
202 PRK11144 modC molybdate transp 100.0 8.9E-38 1.9E-42 328.6 20.6 204 146-372 1-212 (352)
203 PRK14238 phosphate transporter 100.0 2.2E-37 4.7E-42 314.5 22.5 218 145-377 23-253 (271)
204 COG3840 ThiQ ABC-type thiamine 100.0 8.2E-38 1.8E-42 291.3 17.5 213 147-379 2-219 (231)
205 PRK10261 glutathione transport 100.0 1.3E-37 2.9E-42 349.8 23.0 223 145-376 312-550 (623)
206 COG4175 ProV ABC-type proline/ 100.0 9.4E-38 2E-42 312.2 19.2 219 146-374 4-250 (386)
207 cd03297 ABC_ModC_molybdenum_tr 100.0 8.9E-38 1.9E-42 306.1 18.8 204 151-370 5-213 (214)
208 PRK14246 phosphate ABC transpo 100.0 1.6E-37 3.5E-42 313.2 21.2 219 146-374 10-237 (257)
209 TIGR01277 thiQ thiamine ABC tr 100.0 1.8E-37 3.8E-42 303.9 20.7 205 147-370 1-210 (213)
210 PRK14260 phosphate ABC transpo 100.0 3.5E-37 7.6E-42 310.7 23.3 219 146-377 7-241 (259)
211 cd03267 ABC_NatA_like Similar 100.0 8.6E-38 1.9E-42 311.1 18.6 202 154-369 29-234 (236)
212 TIGR03608 L_ocin_972_ABC putat 100.0 1.4E-37 3.1E-42 302.3 19.7 203 149-362 1-206 (206)
213 TIGR00968 3a0106s01 sulfate AB 100.0 2.2E-37 4.8E-42 308.3 21.5 214 147-377 1-218 (237)
214 PRK13543 cytochrome c biogenes 100.0 1.9E-37 4.1E-42 304.1 20.6 199 146-364 11-212 (214)
215 PRK13642 cbiO cobalt transport 100.0 3.8E-37 8.2E-42 313.7 23.5 217 146-377 4-227 (277)
216 PRK10418 nikD nickel transport 100.0 3.1E-37 6.7E-42 310.3 22.5 215 146-377 4-228 (254)
217 PRK13538 cytochrome c biogenes 100.0 1.9E-37 4.1E-42 301.8 20.1 199 146-362 1-202 (204)
218 PRK14252 phosphate ABC transpo 100.0 5.2E-37 1.1E-41 310.5 23.9 223 145-376 15-247 (265)
219 cd03252 ABCC_Hemolysin The ABC 100.0 4.4E-37 9.4E-42 305.6 22.8 208 147-377 1-223 (237)
220 COG4608 AppF ABC-type oligopep 100.0 1.6E-37 3.5E-42 308.2 19.5 184 145-378 3-199 (268)
221 PRK14266 phosphate ABC transpo 100.0 6.9E-37 1.5E-41 306.7 24.2 217 146-377 3-232 (250)
222 TIGR02982 heterocyst_DevA ABC 100.0 4.3E-37 9.3E-42 302.6 22.0 209 147-367 2-219 (220)
223 PLN03073 ABC transporter F fam 100.0 7.9E-37 1.7E-41 346.5 27.2 207 145-379 507-714 (718)
224 PRK14244 phosphate ABC transpo 100.0 3.9E-37 8.5E-42 308.8 22.0 220 147-377 6-235 (251)
225 PRK14258 phosphate ABC transpo 100.0 5.8E-37 1.3E-41 309.6 23.2 217 146-377 7-243 (261)
226 COG1129 MglA ABC-type sugar tr 100.0 2.1E-37 4.6E-42 331.6 20.8 299 146-522 8-319 (500)
227 cd03216 ABC_Carb_Monos_I This 100.0 3.5E-37 7.5E-42 290.1 19.6 159 147-369 1-162 (163)
228 PRK09544 znuC high-affinity zi 100.0 5.4E-37 1.2E-41 308.4 22.3 200 146-377 4-207 (251)
229 cd03251 ABCC_MsbA MsbA is an e 100.0 4.9E-37 1.1E-41 304.4 21.5 209 147-378 1-224 (234)
230 PRK14265 phosphate ABC transpo 100.0 7.5E-37 1.6E-41 311.1 22.9 221 145-377 19-256 (274)
231 TIGR02324 CP_lyasePhnL phospho 100.0 4.3E-37 9.4E-42 303.1 20.3 207 146-363 1-223 (224)
232 PRK14243 phosphate transporter 100.0 6E-37 1.3E-41 310.0 21.9 219 145-377 9-246 (264)
233 TIGR02142 modC_ABC molybdenum 100.0 1.9E-37 4.1E-42 326.4 18.9 209 151-375 4-217 (354)
234 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.2E-36 2.5E-41 302.7 23.5 209 147-378 1-225 (238)
235 PRK13545 tagH teichoic acids e 100.0 1.7E-36 3.8E-41 327.7 26.0 204 145-376 20-229 (549)
236 PRK15134 microcin C ABC transp 100.0 4E-37 8.6E-42 340.1 21.1 223 145-377 274-513 (529)
237 PRK15056 manganese/iron transp 100.0 3.7E-37 8.1E-42 312.9 19.1 215 146-376 6-227 (272)
238 COG4559 ABC-type hemin transpo 100.0 4.1E-37 8.8E-42 293.0 18.0 218 146-378 1-230 (259)
239 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.1E-36 2.4E-41 309.9 22.0 206 146-375 2-222 (275)
240 COG4181 Predicted ABC-type tra 100.0 2.1E-37 4.6E-42 285.9 15.0 213 146-369 6-226 (228)
241 PRK13549 xylose transporter AT 100.0 3E-37 6.6E-42 339.3 19.1 222 146-376 259-491 (506)
242 cd03231 ABC_CcmA_heme_exporter 100.0 5.4E-37 1.2E-41 298.1 18.3 195 147-362 1-198 (201)
243 cd03253 ABCC_ATM1_transporter 100.0 2.4E-36 5.2E-41 299.9 23.2 209 147-378 1-223 (236)
244 PRK14257 phosphate ABC transpo 100.0 1.9E-36 4.1E-41 315.6 23.4 221 145-376 79-310 (329)
245 TIGR03415 ABC_choXWV_ATP choli 100.0 4.3E-37 9.2E-42 325.2 18.6 216 151-377 29-252 (382)
246 cd03244 ABCC_MRP_domain2 Domai 100.0 1.5E-36 3.2E-41 298.5 21.2 202 147-370 3-218 (221)
247 COG1137 YhbG ABC-type (unclass 100.0 8.5E-38 1.8E-42 295.2 11.7 219 146-378 4-227 (243)
248 cd03248 ABCC_TAP TAP, the Tran 100.0 1.5E-36 3.3E-41 299.6 21.0 208 145-367 10-226 (226)
249 TIGR01184 ntrCD nitrate transp 100.0 7.5E-37 1.6E-41 303.2 18.5 191 162-370 1-196 (230)
250 COG3845 ABC-type uncharacteriz 100.0 1E-36 2.2E-41 320.8 20.3 307 146-525 4-322 (501)
251 COG4604 CeuD ABC-type enteroch 100.0 2.4E-37 5.2E-42 291.4 13.9 215 146-376 1-222 (252)
252 TIGR02633 xylG D-xylose ABC tr 100.0 5.3E-37 1.2E-41 336.8 19.0 218 145-370 256-484 (500)
253 PRK14264 phosphate ABC transpo 100.0 3.9E-36 8.4E-41 310.4 24.2 220 146-377 45-287 (305)
254 cd03229 ABC_Class3 This class 100.0 5.7E-37 1.2E-41 292.4 16.6 174 147-366 1-178 (178)
255 COG0410 LivF ABC-type branched 100.0 2.1E-36 4.5E-41 292.8 20.5 218 146-378 3-225 (237)
256 cd03217 ABC_FeS_Assembly ABC-t 100.0 1.7E-36 3.8E-41 294.4 19.3 182 147-370 1-186 (200)
257 COG2274 SunT ABC-type bacterio 100.0 1.5E-36 3.3E-41 341.4 21.4 214 145-380 470-697 (709)
258 PRK13539 cytochrome c biogenes 100.0 3.1E-36 6.8E-41 294.0 20.7 196 146-364 2-200 (207)
259 cd03230 ABC_DR_subfamily_A Thi 100.0 7.7E-37 1.7E-41 290.2 15.9 170 147-367 1-173 (173)
260 PRK14263 phosphate ABC transpo 100.0 1.3E-35 2.9E-40 299.9 24.9 221 145-377 7-243 (261)
261 TIGR03269 met_CoM_red_A2 methy 100.0 3.1E-36 6.8E-41 332.3 22.1 220 145-376 278-514 (520)
262 cd03247 ABCC_cytochrome_bd The 100.0 2.3E-36 5.1E-41 288.0 18.1 172 147-369 1-176 (178)
263 PRK13546 teichoic acids export 100.0 2.7E-35 5.9E-40 298.1 26.9 192 160-379 38-232 (264)
264 PRK03695 vitamin B12-transport 100.0 2.1E-36 4.6E-41 303.4 18.5 209 148-377 2-220 (248)
265 PRK09700 D-allose transporter 100.0 9.3E-37 2E-41 335.7 17.4 216 146-371 265-491 (510)
266 cd03246 ABCC_Protease_Secretio 100.0 2E-36 4.4E-41 287.3 17.0 168 147-367 1-173 (173)
267 cd03234 ABCG_White The White s 100.0 3.6E-36 7.9E-41 297.2 19.3 208 146-370 3-225 (226)
268 PRK10938 putative molybdenum t 100.0 3E-36 6.4E-41 330.2 20.5 219 145-372 259-486 (490)
269 cd03232 ABC_PDR_domain2 The pl 100.0 2.7E-36 5.9E-41 291.2 17.6 180 146-370 3-191 (192)
270 cd03369 ABCC_NFT1 Domain 2 of 100.0 7.7E-36 1.7E-40 290.9 20.6 196 146-371 6-205 (207)
271 COG4987 CydC ABC-type transpor 100.0 6.9E-36 1.5E-40 316.7 21.7 212 146-379 336-561 (573)
272 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 9E-36 2E-40 338.8 23.4 210 146-378 451-672 (686)
273 TIGR01189 ccmA heme ABC export 100.0 5.8E-36 1.3E-40 289.9 18.2 194 147-361 1-197 (198)
274 cd03215 ABC_Carb_Monos_II This 100.0 4.6E-36 1E-40 287.1 17.3 176 146-367 4-182 (182)
275 TIGR02770 nickel_nikD nickel i 100.0 7.1E-36 1.5E-40 296.0 19.2 203 161-377 1-213 (230)
276 COG4525 TauB ABC-type taurine 100.0 1.9E-36 4.2E-41 284.9 14.2 203 146-369 3-215 (259)
277 PRK10982 galactose/methyl gala 100.0 2.9E-36 6.2E-41 330.4 17.8 217 145-371 249-473 (491)
278 PRK13540 cytochrome c biogenes 100.0 3.9E-36 8.4E-41 291.7 16.6 194 146-360 1-197 (200)
279 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.3E-35 2.8E-40 338.8 23.6 211 146-378 477-699 (710)
280 cd03288 ABCC_SUR2 The SUR doma 100.0 2.4E-35 5.3E-40 297.1 22.6 209 145-377 18-241 (257)
281 cd03228 ABCC_MRP_Like The MRP 100.0 8E-36 1.7E-40 282.7 17.5 167 147-366 1-171 (171)
282 COG4619 ABC-type uncharacteriz 100.0 4.8E-36 1E-40 276.2 15.0 207 146-368 3-213 (223)
283 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 2.7E-35 6E-40 271.8 19.6 144 147-366 1-144 (144)
284 cd03213 ABCG_EPDR ABCG transpo 100.0 2.6E-35 5.6E-40 284.9 19.7 181 146-370 3-193 (194)
285 PRK11174 cysteine/glutathione 100.0 1.9E-35 4.2E-40 330.4 21.7 211 146-379 349-572 (588)
286 PRK11288 araG L-arabinose tran 100.0 9.5E-36 2.1E-40 327.1 18.3 219 146-377 257-483 (501)
287 KOG0057|consensus 100.0 3.4E-35 7.5E-40 311.6 21.7 211 146-379 351-574 (591)
288 cd03223 ABCD_peroxisomal_ALDP 100.0 4E-35 8.7E-40 276.9 19.7 163 147-366 1-164 (166)
289 PRK10790 putative multidrug tr 100.0 4.8E-35 1E-39 327.6 23.4 210 146-378 340-562 (592)
290 PRK15439 autoinducer 2 ABC tra 100.0 1.5E-35 3.3E-40 326.1 18.6 212 146-370 268-484 (510)
291 PRK10762 D-ribose transporter 100.0 1.6E-35 3.6E-40 325.2 18.6 213 145-370 256-476 (501)
292 COG1119 ModF ABC-type molybden 100.0 5.2E-35 1.1E-39 285.1 19.9 213 144-369 29-253 (257)
293 TIGR03375 type_I_sec_LssB type 100.0 8.8E-35 1.9E-39 331.1 25.1 211 146-378 463-687 (694)
294 PRK11176 lipid transporter ATP 100.0 6.3E-35 1.4E-39 325.9 22.5 212 146-378 341-566 (582)
295 PRK11160 cysteine/glutathione 100.0 9.6E-35 2.1E-39 324.1 23.9 211 146-378 338-561 (574)
296 PRK13657 cyclic beta-1,2-gluca 100.0 6.8E-35 1.5E-39 326.1 22.6 211 146-378 334-557 (588)
297 COG4172 ABC-type uncharacteriz 100.0 3E-35 6.5E-40 301.8 17.8 226 144-380 274-518 (534)
298 COG4988 CydD ABC-type transpor 100.0 3.7E-35 8E-40 315.3 18.8 211 145-377 319-541 (559)
299 cd03233 ABC_PDR_domain1 The pl 100.0 3.6E-35 7.9E-40 285.7 16.1 189 146-370 3-201 (202)
300 TIGR01193 bacteriocin_ABC ABC- 100.0 1.2E-34 2.6E-39 330.7 22.9 212 146-378 473-696 (708)
301 COG4586 ABC-type uncharacteriz 100.0 5.5E-35 1.2E-39 287.5 16.9 208 160-382 38-249 (325)
302 cd03250 ABCC_MRP_domain1 Domai 100.0 4.3E-34 9.3E-39 278.0 22.0 182 147-366 1-204 (204)
303 KOG0927|consensus 100.0 1.2E-34 2.6E-39 306.4 19.0 211 144-381 387-598 (614)
304 TIGR02203 MsbA_lipidA lipid A 100.0 2.5E-34 5.5E-39 320.2 22.6 210 146-377 330-554 (571)
305 TIGR01166 cbiO cobalt transpor 100.0 8.5E-35 1.8E-39 279.8 16.0 185 156-351 2-189 (190)
306 COG1132 MdlB ABC-type multidru 100.0 3E-34 6.6E-39 319.6 22.0 211 146-379 328-552 (567)
307 cd03290 ABCC_SUR1_N The SUR do 100.0 1.7E-34 3.7E-39 283.6 17.5 201 148-366 2-218 (218)
308 PRK10522 multidrug transporter 100.0 6.6E-34 1.4E-38 315.7 24.4 205 146-375 322-535 (547)
309 cd03237 ABC_RNaseL_inhibitor_d 100.0 3.1E-34 6.8E-39 287.5 19.3 178 160-367 8-194 (246)
310 TIGR00958 3a01208 Conjugate Tr 100.0 3.1E-34 6.7E-39 327.3 21.9 211 146-378 478-701 (711)
311 PRK13409 putative ATPase RIL; 100.0 4.9E-34 1.1E-38 318.1 22.8 192 145-370 339-534 (590)
312 PRK13541 cytochrome c biogenes 100.0 3.1E-34 6.8E-39 277.3 18.5 189 146-359 1-192 (195)
313 PRK15177 Vi polysaccharide exp 100.0 1.6E-33 3.4E-38 276.5 23.7 187 160-377 1-190 (213)
314 TIGR01192 chvA glucan exporter 100.0 5.2E-34 1.1E-38 318.8 23.0 210 146-378 334-557 (585)
315 TIGR01842 type_I_sec_PrtD type 100.0 4.3E-34 9.4E-39 316.9 21.6 209 146-377 316-540 (544)
316 TIGR01257 rim_protein retinal- 100.0 7.4E-34 1.6E-38 344.8 24.3 217 146-378 1937-2158(2272)
317 KOG0058|consensus 100.0 3E-34 6.6E-39 313.6 18.5 211 145-378 464-690 (716)
318 TIGR01846 type_I_sec_HlyB type 100.0 1E-33 2.2E-38 322.4 23.5 211 146-378 455-679 (694)
319 PRK10789 putative multidrug tr 100.0 1.1E-33 2.4E-38 315.3 21.9 211 146-378 313-537 (569)
320 TIGR01257 rim_protein retinal- 100.0 1.1E-33 2.4E-38 343.3 23.2 217 146-378 928-1148(2272)
321 TIGR01194 cyc_pep_trnsptr cycl 100.0 2.3E-33 5E-38 311.9 23.9 201 146-370 337-551 (555)
322 TIGR02204 MsbA_rel ABC transpo 100.0 1.2E-33 2.7E-38 315.0 21.7 210 146-377 337-561 (576)
323 cd03222 ABC_RNaseL_inhibitor T 100.0 9.2E-34 2E-38 270.4 17.1 144 150-368 4-151 (177)
324 cd03291 ABCC_CFTR1 The CFTR su 100.0 1.4E-32 3E-37 280.8 25.9 194 146-377 39-245 (282)
325 cd03236 ABC_RNaseL_inhibitor_d 100.0 8E-34 1.7E-38 286.0 15.8 198 151-368 5-217 (255)
326 KOG0055|consensus 100.0 3E-33 6.5E-38 320.8 21.4 208 145-376 349-573 (1228)
327 COG4674 Uncharacterized ABC-ty 100.0 8E-34 1.7E-38 267.3 13.4 219 145-377 4-233 (249)
328 TIGR03771 anch_rpt_ABC anchore 100.0 1.8E-33 3.8E-38 277.8 16.6 193 167-377 1-199 (223)
329 cd03238 ABC_UvrA The excision 100.0 4.7E-33 1E-37 265.3 18.1 153 159-366 8-165 (176)
330 cd00267 ABC_ATPase ABC (ATP-bi 100.0 6E-33 1.3E-37 259.0 17.8 153 149-366 2-157 (157)
331 COG4107 PhnK ABC-type phosphon 100.0 2.4E-33 5.1E-38 259.7 14.6 220 146-371 6-234 (258)
332 TIGR02857 CydD thiol reductant 100.0 5.4E-33 1.2E-37 307.0 19.7 196 146-362 320-529 (529)
333 PTZ00265 multidrug resistance 100.0 7.6E-33 1.6E-37 334.3 22.4 212 146-378 1165-1451(1466)
334 PRK10535 macrolide transporter 100.0 1.3E-32 2.9E-37 310.5 22.9 217 146-373 4-227 (648)
335 PLN03211 ABC transporter G-25; 100.0 3.9E-33 8.4E-38 314.5 18.0 216 148-379 70-296 (659)
336 PLN03130 ABC transporter C fam 100.0 2.9E-32 6.2E-37 332.1 24.5 210 146-378 1237-1460(1622)
337 PLN03232 ABC transporter C fam 100.0 3E-32 6.6E-37 331.1 24.2 210 146-378 1234-1457(1495)
338 COG0396 sufC Cysteine desulfur 100.0 8.4E-32 1.8E-36 260.0 21.8 220 145-373 2-229 (251)
339 TIGR02868 CydC thiol reductant 100.0 1.8E-32 3.8E-37 303.0 18.5 183 146-349 334-529 (529)
340 TIGR00954 3a01203 Peroxysomal 100.0 6.4E-32 1.4E-36 305.4 21.7 184 146-364 451-653 (659)
341 PTZ00243 ABC transporter; Prov 100.0 1.2E-31 2.6E-36 326.0 24.9 210 146-378 1308-1532(1560)
342 TIGR00957 MRP_assoc_pro multi 100.0 1.2E-31 2.6E-36 326.4 21.6 209 146-377 1284-1506(1522)
343 PTZ00265 multidrug resistance 100.0 1.9E-31 4.2E-36 322.1 23.0 206 146-365 382-655 (1466)
344 cd03270 ABC_UvrA_I The excisio 100.0 2E-31 4.4E-36 263.9 19.1 97 273-370 118-225 (226)
345 TIGR01187 potA spermidine/putr 100.0 5.8E-32 1.3E-36 281.7 15.8 184 177-377 1-188 (325)
346 COG4167 SapF ABC-type antimicr 100.0 6E-32 1.3E-36 252.1 13.7 221 146-380 4-241 (267)
347 KOG0055|consensus 100.0 1.6E-31 3.5E-36 306.6 20.0 212 145-379 986-1213(1228)
348 TIGR01271 CFTR_protein cystic 100.0 3.6E-31 7.8E-36 321.5 23.4 209 146-378 1217-1439(1490)
349 COG1101 PhnK ABC-type uncharac 100.0 1.1E-30 2.4E-35 249.6 19.0 213 147-370 2-230 (263)
350 COG4148 ModC ABC-type molybdat 100.0 1.5E-31 3.3E-36 263.8 12.6 206 151-375 5-215 (352)
351 COG1134 TagH ABC-type polysacc 100.0 2.4E-30 5.3E-35 252.7 20.4 189 159-373 40-231 (249)
352 KOG0062|consensus 100.0 3.9E-30 8.4E-35 271.0 22.1 210 144-381 360-571 (582)
353 COG4133 CcmA ABC-type transpor 100.0 2.5E-30 5.5E-35 242.8 15.1 190 146-353 2-194 (209)
354 TIGR00956 3a01205 Pleiotropic 100.0 3.4E-30 7.4E-35 310.8 20.3 210 146-371 759-986 (1394)
355 TIGR00955 3a01204 The Eye Pigm 100.0 5.7E-30 1.2E-34 287.8 19.4 205 157-379 36-256 (617)
356 COG4778 PhnL ABC-type phosphon 100.0 9.7E-30 2.1E-34 234.9 17.1 211 146-364 4-227 (235)
357 KOG0066|consensus 100.0 1.5E-29 3.2E-34 261.1 18.4 201 144-381 584-793 (807)
358 PLN03140 ABC transporter G fam 100.0 1.1E-29 2.4E-34 306.0 20.4 211 146-373 867-1104(1470)
359 COG4618 ArpD ABC-type protease 100.0 9.3E-30 2E-34 268.1 16.8 205 145-371 333-553 (580)
360 PLN03232 ABC transporter C fam 100.0 4.1E-29 8.8E-34 303.9 24.5 191 146-378 614-827 (1495)
361 COG4136 ABC-type uncharacteriz 100.0 4.6E-30 1E-34 232.7 11.8 201 146-362 2-207 (213)
362 TIGR00957 MRP_assoc_pro multi 100.0 4.9E-29 1.1E-33 303.6 24.7 198 146-377 636-848 (1522)
363 PLN03130 ABC transporter C fam 100.0 6.1E-29 1.3E-33 303.1 24.4 191 146-378 614-827 (1622)
364 KOG0056|consensus 100.0 1.5E-29 3.3E-34 263.9 13.9 214 145-378 536-760 (790)
365 TIGR01271 CFTR_protein cystic 100.0 4.9E-28 1.1E-32 294.2 23.6 187 159-378 439-635 (1490)
366 PTZ00243 ABC transporter; Prov 100.0 1.2E-27 2.6E-32 291.2 24.1 193 152-378 666-869 (1560)
367 COG5265 ATM1 ABC-type transpor 100.0 4.2E-28 9.2E-33 250.7 16.8 218 146-379 262-486 (497)
368 TIGR00956 3a01205 Pleiotropic 100.0 2.7E-28 5.8E-33 294.5 17.8 205 158-376 73-297 (1394)
369 cd03271 ABC_UvrA_II The excisi 100.0 2.5E-27 5.4E-32 239.0 21.6 203 160-370 9-258 (261)
370 KOG0059|consensus 100.0 1.2E-27 2.5E-32 278.1 18.5 218 145-377 563-785 (885)
371 PLN03140 ABC transporter G fam 99.9 1.4E-27 3E-32 288.0 16.2 206 153-376 173-424 (1470)
372 cd03279 ABC_sbcCD SbcCD and ot 99.9 1.4E-26 3.1E-31 227.1 15.1 191 146-367 5-211 (213)
373 KOG0054|consensus 99.9 1.5E-26 3.2E-31 271.3 17.4 212 145-378 1137-1362(1381)
374 cd03278 ABC_SMC_barmotin Barmo 99.9 3.8E-26 8.1E-31 221.8 16.1 164 163-364 14-190 (197)
375 COG1245 Predicted ATPase, RNas 99.9 1.2E-25 2.6E-30 234.2 19.4 312 151-533 79-409 (591)
376 KOG0061|consensus 99.9 3.6E-26 7.9E-31 255.8 16.6 215 145-375 24-256 (613)
377 cd03272 ABC_SMC3_euk Eukaryoti 99.9 7.9E-26 1.7E-30 225.4 16.6 77 286-363 152-234 (243)
378 PF00005 ABC_tran: ABC transpo 99.9 1.7E-26 3.7E-31 209.7 7.9 133 162-321 1-137 (137)
379 cd03274 ABC_SMC4_euk Eukaryoti 99.9 6.9E-27 1.5E-31 229.5 5.0 183 147-363 6-203 (212)
380 PRK00635 excinuclease ABC subu 99.9 1.6E-24 3.4E-29 260.3 26.1 106 269-377 787-904 (1809)
381 KOG0054|consensus 99.9 5.5E-25 1.2E-29 258.2 21.5 195 145-379 517-731 (1381)
382 COG4138 BtuD ABC-type cobalami 99.9 3.1E-26 6.6E-31 212.7 8.6 202 145-371 2-214 (248)
383 COG1129 MglA ABC-type sugar tr 99.9 1.7E-24 3.7E-29 232.5 16.1 213 145-369 262-481 (500)
384 COG1245 Predicted ATPase, RNas 99.9 3.3E-24 7.2E-29 223.4 16.5 181 146-364 342-531 (591)
385 COG4615 PvdE ABC-type sideroph 99.9 5.6E-24 1.2E-28 218.4 16.0 201 146-372 322-531 (546)
386 PRK00349 uvrA excinuclease ABC 99.9 1.2E-23 2.6E-28 243.2 20.7 106 271-378 809-926 (943)
387 TIGR00630 uvra excinuclease AB 99.9 2.7E-23 5.9E-28 239.9 22.0 103 271-375 807-921 (924)
388 cd03273 ABC_SMC2_euk Eukaryoti 99.9 2.6E-23 5.7E-28 208.9 16.3 95 268-363 123-242 (251)
389 cd03275 ABC_SMC1_euk Eukaryoti 99.9 2.9E-23 6.3E-28 208.3 14.7 77 287-364 150-233 (247)
390 cd03240 ABC_Rad50 The catalyti 99.9 2.9E-23 6.3E-28 202.6 13.4 77 287-364 110-197 (204)
391 COG4178 ABC-type uncharacteriz 99.9 6.2E-23 1.3E-27 224.4 16.9 183 145-364 391-588 (604)
392 cd03276 ABC_SMC6_euk Eukaryoti 99.9 1.5E-22 3.2E-27 196.8 15.6 92 270-366 91-192 (198)
393 COG4170 SapD ABC-type antimicr 99.9 5.4E-23 1.2E-27 196.0 11.6 218 146-370 3-240 (330)
394 KOG2355|consensus 99.9 1.1E-22 2.3E-27 193.5 12.8 208 146-369 13-228 (291)
395 cd03280 ABC_MutS2 MutS2 homolo 99.9 3E-22 6.6E-27 194.6 12.7 141 161-370 16-171 (200)
396 COG3845 ABC-type uncharacteriz 99.8 1.9E-20 4.1E-25 198.1 16.8 219 144-370 255-484 (501)
397 KOG0060|consensus 99.8 5.1E-20 1.1E-24 197.1 15.5 198 145-364 432-641 (659)
398 cd03277 ABC_SMC5_euk Eukaryoti 99.8 9E-20 2E-24 179.2 12.7 82 285-366 119-211 (213)
399 KOG0065|consensus 99.8 2.3E-20 5E-25 215.3 8.9 211 147-373 788-1015(1391)
400 cd03285 ABC_MSH2_euk MutS2 hom 99.8 2.6E-19 5.7E-24 177.0 13.6 153 157-371 15-174 (222)
401 cd03241 ABC_RecN RecN ATPase i 99.8 6.7E-19 1.5E-23 179.5 16.7 76 290-366 168-249 (276)
402 KOG0064|consensus 99.8 2.2E-19 4.8E-24 190.0 11.8 195 145-363 480-682 (728)
403 COG2401 ABC-type ATPase fused 99.8 3.9E-19 8.5E-24 183.8 13.1 180 160-368 397-588 (593)
404 cd03239 ABC_SMC_head The struc 99.8 9.2E-19 2E-23 167.4 14.2 71 293-364 95-172 (178)
405 cd03227 ABC_Class2 ABC-type Cl 99.8 1.2E-18 2.6E-23 163.9 13.6 72 292-364 77-155 (162)
406 PRK00635 excinuclease ABC subu 99.8 1.5E-18 3.2E-23 209.3 17.0 194 275-536 459-677 (1809)
407 TIGR00630 uvra excinuclease AB 99.8 1.5E-18 3.2E-23 200.9 14.8 102 274-377 469-581 (924)
408 cd03243 ABC_MutS_homologs The 99.8 2.1E-18 4.5E-23 167.9 12.0 81 288-370 87-171 (202)
409 cd03242 ABC_RecF RecF is a rec 99.7 2.8E-17 6.2E-22 167.1 15.6 77 290-367 181-269 (270)
410 cd03282 ABC_MSH4_euk MutS4 hom 99.7 3.8E-17 8.3E-22 159.5 13.7 141 158-357 15-159 (204)
411 COG0178 UvrA Excinuclease ATPa 99.7 1.3E-16 2.8E-21 176.7 18.6 108 269-378 799-918 (935)
412 PRK00349 uvrA excinuclease ABC 99.7 9.7E-17 2.1E-21 186.2 12.7 102 274-377 471-583 (943)
413 cd03283 ABC_MutS-like MutS-lik 99.7 1.9E-16 4.1E-21 154.1 9.8 52 309-360 104-161 (199)
414 KOG0063|consensus 99.7 6E-16 1.3E-20 160.8 13.5 174 155-365 344-533 (592)
415 cd03284 ABC_MutS1 MutS1 homolo 99.6 1.9E-15 4.2E-20 148.9 13.4 77 292-369 85-172 (216)
416 KOG0063|consensus 99.6 3.8E-15 8.2E-20 155.0 14.3 93 271-364 193-288 (592)
417 smart00534 MUTSac ATPase domai 99.6 2.1E-15 4.5E-20 145.0 7.9 79 277-358 47-130 (185)
418 TIGR01069 mutS2 MutS2 family p 99.6 1.1E-13 2.4E-18 158.7 21.9 150 146-353 295-449 (771)
419 KOG0065|consensus 99.6 2.3E-15 5E-20 174.4 7.2 204 159-377 128-349 (1391)
420 PRK00064 recF recombination pr 99.5 6.1E-14 1.3E-18 148.5 15.4 79 289-367 270-359 (361)
421 cd03281 ABC_MSH5_euk MutS5 hom 99.5 1.1E-13 2.3E-18 136.3 13.7 61 296-356 94-161 (213)
422 PRK13695 putative NTPase; Prov 99.5 1.5E-14 3.3E-19 137.3 4.2 83 286-370 72-156 (174)
423 PF02463 SMC_N: RecF/RecN/SMC 99.5 2.9E-13 6.4E-18 132.9 12.9 86 270-363 121-212 (220)
424 PRK00409 recombination and DNA 99.5 1.7E-12 3.6E-17 149.5 21.0 76 286-362 384-463 (782)
425 TIGR02858 spore_III_AA stage I 99.5 1E-12 2.2E-17 133.5 15.3 134 173-366 112-259 (270)
426 cd03287 ABC_MSH3_euk MutS3 hom 99.4 3.6E-12 7.9E-17 126.1 14.1 36 159-194 18-53 (222)
427 cd01128 rho_factor Transcripti 99.4 1.4E-11 3E-16 123.9 15.4 75 291-368 128-212 (249)
428 TIGR00618 sbcc exonuclease Sbc 99.3 2E-12 4.3E-17 154.1 10.4 81 285-365 943-1036(1042)
429 PHA02562 46 endonuclease subun 99.3 2.6E-12 5.6E-17 143.3 9.5 80 288-368 464-556 (562)
430 PRK01156 chromosome segregatio 99.3 7.3E-12 1.6E-16 147.3 13.3 75 288-363 797-883 (895)
431 TIGR00634 recN DNA repair prot 99.3 3.4E-12 7.3E-17 142.7 9.9 75 291-366 439-519 (563)
432 PRK08533 flagellar accessory p 99.3 1.9E-11 4.1E-16 121.7 13.1 71 292-363 95-184 (230)
433 COG0178 UvrA Excinuclease ATPa 99.3 1.2E-11 2.5E-16 137.8 11.4 103 275-379 464-577 (935)
434 PTZ00132 GTP-binding nuclear p 99.3 2.2E-11 4.9E-16 119.2 11.8 50 289-338 147-203 (215)
435 PRK03918 chromosome segregatio 99.3 8.6E-12 1.9E-16 146.3 9.8 76 287-363 783-867 (880)
436 cd01124 KaiC KaiC is a circadi 99.3 2.5E-11 5.4E-16 115.6 11.1 78 286-363 65-163 (187)
437 cd03286 ABC_MSH6_euk MutS6 hom 99.3 8.3E-11 1.8E-15 116.1 14.0 134 157-356 15-160 (218)
438 PRK10869 recombination and rep 99.3 1.8E-11 4E-16 136.2 10.4 74 292-366 430-509 (553)
439 TIGR00606 rad50 rad50. This fa 99.2 1.5E-11 3.4E-16 149.4 8.7 69 289-357 1196-1278(1311)
440 PRK07721 fliI flagellum-specif 99.2 1.8E-10 3.9E-15 124.4 14.4 179 158-370 145-335 (438)
441 PRK06793 fliI flagellum-specif 99.2 1.1E-10 2.4E-15 125.3 11.3 162 147-370 131-303 (432)
442 PRK10246 exonuclease subunit S 99.2 6.5E-11 1.4E-15 140.9 10.3 78 287-364 944-1032(1047)
443 TIGR02168 SMC_prok_B chromosom 99.1 9.1E-11 2E-15 140.8 8.1 77 286-363 1083-1165(1179)
444 COG3910 Predicted ATPase [Gene 99.1 2E-09 4.3E-14 102.1 12.9 86 288-376 125-213 (233)
445 PRK13830 conjugal transfer pro 99.0 2.3E-09 5.1E-14 124.6 15.7 62 308-369 650-724 (818)
446 PRK02224 chromosome segregatio 99.0 4.8E-10 1E-14 131.7 8.4 76 289-365 778-869 (880)
447 TIGR02169 SMC_prok_A chromosom 99.0 5.8E-10 1.3E-14 134.1 8.5 76 287-363 1069-1150(1164)
448 cd01120 RecA-like_NTPases RecA 99.0 8.4E-10 1.8E-14 101.4 7.2 61 292-352 67-140 (165)
449 PRK06067 flagellar accessory p 98.9 5.1E-09 1.1E-13 104.2 11.6 73 291-363 99-186 (234)
450 cd00820 PEPCK_HprK Phosphoenol 98.9 4.1E-09 8.9E-14 92.3 6.2 46 159-212 2-47 (107)
451 TIGR02788 VirB11 P-type DNA tr 98.8 3.5E-09 7.6E-14 110.0 5.9 72 301-377 209-280 (308)
452 PRK05399 DNA mismatch repair p 98.8 2.5E-08 5.4E-13 116.4 12.1 68 290-358 664-738 (854)
453 COG0419 SbcC ATPase involved i 98.8 1.6E-08 3.4E-13 119.4 9.7 76 288-364 811-897 (908)
454 TIGR00611 recf recF protein. A 98.8 1.5E-08 3.2E-13 107.6 8.4 63 291-353 274-345 (365)
455 COG1121 ZnuC ABC-type Mn/Zn tr 98.8 6E-09 1.3E-13 104.3 4.3 77 464-542 2-91 (254)
456 cd01131 PilT Pilus retraction 98.7 4.4E-08 9.5E-13 95.3 9.3 56 302-362 66-121 (198)
457 cd01125 repA Hexameric Replica 98.7 4.3E-08 9.3E-13 97.9 8.0 44 306-350 107-160 (239)
458 smart00382 AAA ATPases associa 98.7 1.3E-06 2.9E-11 76.8 16.3 59 290-348 58-125 (148)
459 PRK14079 recF recombination pr 98.7 5E-08 1.1E-12 103.0 8.2 75 291-369 262-345 (349)
460 TIGR03238 dnd_assoc_3 dnd syst 98.7 2.7E-08 6E-13 107.2 6.1 54 160-217 20-74 (504)
461 TIGR01026 fliI_yscN ATPase Fli 98.6 3.2E-07 6.9E-12 99.5 12.9 179 158-370 150-340 (440)
462 TIGR02655 circ_KaiC circadian 98.6 2.9E-08 6.3E-13 109.3 3.2 78 275-363 99-190 (484)
463 PRK13891 conjugal transfer pro 98.6 7.1E-07 1.5E-11 104.6 14.8 66 303-368 680-751 (852)
464 TIGR02680 conserved hypothetic 98.5 1.1E-07 2.4E-12 116.0 7.5 77 286-362 1241-1331(1353)
465 cd02023 UMPK Uridine monophosp 98.5 1E-07 2.2E-12 92.2 4.9 49 273-325 65-113 (198)
466 PRK06995 flhF flagellar biosyn 98.5 4.7E-07 1E-11 98.9 10.3 50 161-210 245-294 (484)
467 TIGR02868 CydC thiol reductant 98.4 1.4E-07 3E-12 104.8 3.9 73 466-538 334-421 (529)
468 COG1120 FepC ABC-type cobalami 98.4 1.8E-07 4E-12 94.1 4.2 69 466-535 2-86 (258)
469 cd03223 ABCD_peroxisomal_ALDP 98.4 2.3E-07 4.9E-12 87.6 4.5 70 467-536 1-75 (166)
470 PRK13543 cytochrome c biogenes 98.4 2.8E-07 6.1E-12 90.5 4.8 76 461-537 6-94 (214)
471 PF13304 AAA_21: AAA domain; P 98.4 8.6E-07 1.9E-11 85.8 8.0 66 288-353 232-303 (303)
472 PRK09544 znuC high-affinity zi 98.4 2.5E-07 5.3E-12 93.3 3.9 71 465-536 3-78 (251)
473 TIGR00152 dephospho-CoA kinase 98.3 9.8E-07 2.1E-11 84.8 7.0 69 295-365 60-133 (188)
474 PRK11247 ssuB aliphatic sulfon 98.3 4.6E-07 1E-11 91.7 4.7 74 464-538 10-94 (257)
475 TIGR03881 KaiC_arch_4 KaiC dom 98.3 2.7E-07 5.9E-12 91.3 2.5 26 168-193 16-41 (229)
476 cd03250 ABCC_MRP_domain1 Domai 98.3 5.1E-07 1.1E-11 87.8 4.2 70 467-538 1-79 (204)
477 TIGR01420 pilT_fam pilus retra 98.3 2.7E-06 5.8E-11 89.8 9.8 45 302-350 187-231 (343)
478 PRK10247 putative ABC transpor 98.3 5.1E-07 1.1E-11 89.3 4.1 74 464-538 5-94 (225)
479 PF12848 ABC_tran_2: ABC trans 98.3 4.7E-06 1E-10 69.8 9.4 53 360-412 1-53 (85)
480 PF00488 MutS_V: MutS domain V 98.3 1E-05 2.2E-10 81.0 13.2 46 308-353 120-170 (235)
481 COG1126 GlnQ ABC-type polar am 98.3 5.5E-07 1.2E-11 87.7 3.8 72 465-537 1-89 (240)
482 COG3638 ABC-type phosphate/pho 98.3 5.2E-07 1.1E-11 88.8 3.4 74 465-538 2-94 (258)
483 TIGR00960 3a0501s02 Type II (G 98.3 6.7E-07 1.4E-11 87.7 4.1 73 466-538 1-93 (216)
484 TIGR02903 spore_lon_C ATP-depe 98.3 4.7E-06 1E-10 94.3 11.4 48 272-337 244-291 (615)
485 PLN03210 Resistant to P. syrin 98.3 3.8E-06 8.3E-11 101.7 11.3 43 165-208 200-242 (1153)
486 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.3 5.4E-07 1.2E-11 88.4 3.3 72 467-538 1-95 (218)
487 TIGR01288 nodI ATP-binding ABC 98.3 7.2E-07 1.6E-11 92.4 4.4 73 464-537 2-89 (303)
488 PRK11629 lolD lipoprotein tran 98.2 7.9E-07 1.7E-11 88.3 4.2 75 464-538 3-100 (233)
489 cd03269 ABC_putative_ATPase Th 98.2 6.2E-07 1.3E-11 87.5 3.2 71 467-538 1-83 (210)
490 cd03293 ABC_NrtD_SsuB_transpor 98.2 7.4E-07 1.6E-11 87.7 3.6 72 467-538 1-86 (220)
491 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.2 9.2E-07 2E-11 81.6 4.0 65 467-532 1-70 (144)
492 PRK10790 putative multidrug tr 98.2 7.7E-07 1.7E-11 100.3 4.2 74 465-538 339-428 (592)
493 PRK10908 cell division protein 98.2 9.8E-07 2.1E-11 86.9 4.3 71 466-536 1-90 (222)
494 PRK07196 fliI flagellum-specif 98.2 4.2E-06 9E-11 90.4 9.3 37 158-195 142-178 (434)
495 cd03265 ABC_DrrA DrrA is the A 98.2 9.4E-07 2E-11 86.9 3.9 70 467-537 1-85 (220)
496 cd03292 ABC_FtsE_transporter F 98.2 8.6E-07 1.9E-11 86.6 3.5 72 467-538 1-91 (214)
497 cd03296 ABC_CysA_sulfate_impor 98.2 1.1E-06 2.4E-11 87.6 4.3 71 466-537 2-86 (239)
498 cd03263 ABC_subfamily_A The AB 98.2 9.7E-07 2.1E-11 86.7 3.8 71 467-537 1-87 (220)
499 PRK10584 putative ABC transpor 98.2 1.1E-06 2.4E-11 86.8 4.2 74 465-538 5-101 (228)
500 TIGR01070 mutS1 DNA mismatch r 98.2 6.7E-06 1.5E-10 96.0 11.2 46 308-353 669-719 (840)
No 1
>KOG0066|consensus
Probab=100.00 E-value=4e-76 Score=603.80 Aligned_cols=438 Identities=61% Similarity=0.940 Sum_probs=400.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcCCCccccccccccCcccccCCcccEEEEeEEEEeCCceeeEeeeEEEEC
Q psy11936 92 HKEKKKMKKDMEFQKQVETITKKGGQGHSELGDNFTISQMEKTGGQLAALENAVDIKVENFSISAKGNDLFVNANLLIAN 171 (548)
Q Consensus 92 ~~~~k~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~nls~~y~~~~iL~~vsl~I~~ 171 (548)
-+++++.+.+++++++++.+ ..+.+...+|++++...+..+...++++++|.++|++++-.++.+|.|.||.|-.
T Consensus 215 gqek~kq~~Q~Eyerq~~g~-----~~~~~l~n~FtvSQ~~ks~~q~A~lEna~DIKiEnF~ISA~Gk~LFvnA~L~Iv~ 289 (807)
T KOG0066|consen 215 GQEKKKQKDQEEYERQMEGI-----GSGAELGNHFTVSQLSKSGTQLAQLENAMDIKIENFDISAQGKLLFVNASLTIVY 289 (807)
T ss_pred chhhhhhhHHHHHHHHhhcc-----cchhhhcccccHHHhhhhhhHHHHHhhcccceeeeeeeecccceeeeccceEEEe
Confidence 34666677888899888754 4567788899999988777777788999999999999999999999999999999
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHHHhhhc--CChhH
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAAD--FSSEQ 249 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~ 249 (548)
|.+||||||||-||||||+.|+...+.+|+++.+.++.|++...+.+.+..++..+..+..++.....+...+ ...+.
T Consensus 290 GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~ta 369 (807)
T KOG0066|consen 290 GRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTA 369 (807)
T ss_pred cceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHH
Confidence 9999999999999999999999888889999999999999999888889999999988888887666554433 35567
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q psy11936 250 QEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVI 329 (548)
Q Consensus 250 ~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~ 329 (548)
.+.+..+++.+..++.+.++.+++.+|..|||+.++.++|...+|||||+||+|||||+..|.+|+|||||||||..++.
T Consensus 370 aErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVI 449 (807)
T KOG0066|consen 370 AERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVI 449 (807)
T ss_pred HHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceee
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy11936 330 WLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSK 409 (548)
Q Consensus 330 ~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 409 (548)
||-+||+.|..|++|||||..|++.+|+.||+|++.++++|.|||+.|..+|.+......+.|++|+++++.+++.+.+.
T Consensus 450 WLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrGNY~~FKKmY~Qk~~e~~K~yekQeK~LkelKa~GkS~ 529 (807)
T KOG0066|consen 450 WLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGNYTLFKKMYAQKMQEHEKNYEKQEKQLKELKAEGKSA 529 (807)
T ss_pred ehhhHHhhhhheeEEEecccchHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceeeeecCCCCCCCCCcEEEEeeEEEeCCCCcccccCCcc
Q psy11936 410 KQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFPDPPPLQPPILGLHNVTFAYEGMKPLLMSKADE 489 (548)
Q Consensus 410 k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f~~~~~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~ 489 (548)
+++.++.+..+.+++.+...+.+...+.....+++.+|.++.++|.||+|.++.+|||-+.||+|+|++.+|||++++|-
T Consensus 530 KqAEkq~Ke~ltrKq~K~~~Knq~dded~gapELL~RpKEY~VkF~FPep~~L~PPvLGlH~VtFgy~gqkpLFkkldFG 609 (807)
T KOG0066|consen 530 KQAEKQVKEQLTRKQKKGGKKNQNDDEDAGAPELLQRPKEYSVKFQFPEPTKLNPPVLGLHDVTFGYPGQKPLFKKLDFG 609 (807)
T ss_pred HHHHHHHHHHHHHHHHhccccccCccccccCHHHHhCchheEEEEecCCCCCCCCCeeecccccccCCCCCchhhccccc
Confidence 88888888888888888777766555556677888899999999999999999999999999999999889999999996
Q ss_pred C-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeeeeeccc
Q psy11936 490 D-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAYEGMKP 534 (548)
Q Consensus 490 ~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y~~~~~ 534 (548)
. -.-++.|.||| |||+++++|.+.|+.|....+|.++|++|.||.
T Consensus 610 iDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~ 659 (807)
T KOG0066|consen 610 IDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHA 659 (807)
T ss_pred ccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhh
Confidence 4 56789999997 899999999999999999999999999999985
No 2
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.1e-67 Score=576.02 Aligned_cols=382 Identities=35% Similarity=0.498 Sum_probs=304.8
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCC------CCCCeEEEEeceeeccCc-h
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK------VPPNIDILYCEQEVVADD-L 217 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~------~~~~g~I~~~~q~i~~~~-~ 217 (548)
.+|.++||+++|+++++|+++||+|.+|++|||||+||||||||||+|+|...+ .+.+.+|.|..|+..... .
T Consensus 2 ~~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~ 81 (530)
T COG0488 2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEK 81 (530)
T ss_pred ceEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCc
Confidence 368999999999999999999999999999999999999999999999986422 222336778888776553 3
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHH
Q psy11936 218 TAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGW 297 (548)
Q Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 297 (548)
+....++........+..........+... ....+..+...+..++.|..+.++..+|..+||+.. ++++++|||||
T Consensus 82 tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~--~~~~~~LSGG~ 158 (530)
T COG0488 82 TVLDYVIEGFGELRELLAELEEAYALLADP-DDELLAELEALLEELDGWTLEARAEEALLGLGFPDE--DRPVSSLSGGW 158 (530)
T ss_pred cHHHHHHhhhHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc--cCchhhcCHHH
Confidence 444555444333333333333222212111 222233344445556678999999999999999864 89999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|+||+||+||+.+||||||||||||||..++.||+++|.++.+||||||||++|++.+|++|+.+++|++..|.|||+.|
T Consensus 159 r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~~ 238 (530)
T COG0488 159 RRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSY 238 (530)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEecCCHHHH
Confidence 99999999999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCc--cceeeee
Q psy11936 378 KKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPR--EYVVKFS 455 (548)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~--~~~~~~~ 455 (548)
.+++++...+..+.++++++++++++.++.+...++.++ +++++|.+........ . ...+|. ..+..|.
T Consensus 239 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~------k~a~sr~k~l~k~~~~--~-~~~~~~~~~~~~~~~ 309 (530)
T COG0488 239 LEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKA------KKAKSRIKRLEKLEAR--L-AEERPVEEGKPLAFR 309 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH------HHHHHHHHHHHHHHhh--h-hhcccccccccceee
Confidence 999999999999999999999999999988776543322 2334443333221100 0 011121 3445678
Q ss_pred cCCCC-CCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeee
Q psy11936 456 FPDPP-PLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAY 529 (548)
Q Consensus 456 f~~~~-~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y 529 (548)
|+.+. +++++|+.++|++++|++++++|+++||.. .|.++.|.||| |||+|+|+|.+.|..|.|..++||.++|
T Consensus 310 f~~~~~~~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igy 389 (530)
T COG0488 310 FPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGY 389 (530)
T ss_pred ccCCcccCCCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEE
Confidence 87776 489999999999999977679999999986 99999999997 8999999999999999999999999999
Q ss_pred eeccceeee
Q psy11936 530 EGMKPLLVD 538 (548)
Q Consensus 530 ~~~~~~~~~ 538 (548)
|+|+-..++
T Consensus 390 f~Q~~~~l~ 398 (530)
T COG0488 390 FDQHRDELD 398 (530)
T ss_pred EEehhhhcC
Confidence 999985544
No 3
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-59 Score=528.35 Aligned_cols=370 Identities=31% Similarity=0.458 Sum_probs=279.4
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee--------ccCch
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV--------VADDL 217 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i--------~~~~~ 217 (548)
+|+++||+++|+++.+|+||||+|.+|+++|||||||||||||||+|+|. ..|.+|.|.+.+... .....
T Consensus 1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~--~~pd~G~I~~~~~~~i~~~~q~~~~~~~ 78 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNE--ISADGGSYTFPGNWQLAWVNQETPALPQ 78 (638)
T ss_pred CEEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEecCCCEEEEEecCCCCCCC
Confidence 48899999999999999999999999999999999999999999999984 357788887765421 00011
Q ss_pred hHHHHHHHhhHHHHHHHHHHHH-HhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHH
Q psy11936 218 TAVESVLKADVKRTELLAECAK-LEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGG 296 (548)
Q Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 296 (548)
+.+..+... ...+..... +...... .....+..+...+...+.+....++..+|..+||.....++++.+||||
T Consensus 79 ~~~~~v~~~----~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgG 153 (638)
T PRK10636 79 PALEYVIDG----DREYRQLEAQLHDANER-NDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGG 153 (638)
T ss_pred CHHHHHHHh----hHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHH
Confidence 111111110 001100000 0000000 0000111111122223445667789999999999744678999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
|||||+||+||+.+|+||||||||||||+.++.||.++|.++++|||+||||++|+..+||+|++|++|+++.|.|+|+.
T Consensus 154 erqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~ 233 (638)
T PRK10636 154 WRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSS 233 (638)
T ss_pred HHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceeeeec
Q psy11936 377 FKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSF 456 (548)
Q Consensus 377 f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f 456 (548)
|...+..+...+.+.|+++++++++++.++.+++..+.+ .++++++.+.... +...+. ......+.|.|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~a~~------~~~a~~r~~~l~~---~~~~~~--~~~~~~~~~~~ 302 (638)
T PRK10636 234 FEVQRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATK------AKQAQSRIKMLER---MELIAP--AHVDNPFHFSF 302 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------HHHHHHHHHHHHH---hhcccc--cccCCceeEec
Confidence 998888777778889999999999998887654332111 1222333332211 111110 00123567788
Q ss_pred CCCCCCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeeeee
Q psy11936 457 PDPPPLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAYEG 531 (548)
Q Consensus 457 ~~~~~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y~~ 531 (548)
+.+.++++++|+++||+++|++ +++|+|+||+. .|..+.|.||| |||+|+|+|.++|++|.|+.+++++++|+.
T Consensus 303 ~~~~~~~~~~l~~~~l~~~y~~-~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~ 381 (638)
T PRK10636 303 RAPESLPNPLLKMEKVSAGYGD-RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFA 381 (638)
T ss_pred CCCccCCCceEEEEeeEEEeCC-eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEec
Confidence 8777778899999999999965 67999999985 89999999997 899999999999999999998999999999
Q ss_pred ccc
Q psy11936 532 MKP 534 (548)
Q Consensus 532 ~~~ 534 (548)
|++
T Consensus 382 Q~~ 384 (638)
T PRK10636 382 QHQ 384 (638)
T ss_pred Ccc
Confidence 986
No 4
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.7e-58 Score=522.99 Aligned_cols=381 Identities=40% Similarity=0.643 Sum_probs=294.1
Q ss_pred CcccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCC-CCCCCeEEEEeceeeccCchhHHH
Q psy11936 143 NAVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDL-KVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 143 ~~~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~-~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
.+.+|+++||+++|+++.+|+|+||+|.+|+++||||+|||||||||++|+|..+ ..|.+|+|.|++|++...+.+...
T Consensus 174 ~~~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~ 253 (718)
T PLN03073 174 AIKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ 253 (718)
T ss_pred CceeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence 4567999999999998899999999999999999999999999999999998532 268899999999986544433333
Q ss_pred HHHHhhHHH-------HHHHHHHHHHhhhc-------------CChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCC
Q psy11936 222 SVLKADVKR-------TELLAECAKLEAAD-------------FSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGF 281 (548)
Q Consensus 222 ~~~~~~~~~-------~~l~~~~~~~~~~~-------------~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl 281 (548)
.+....... .++..+...+.... ........+..+++.+...+.|..+.++..+|..+||
T Consensus 254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl 333 (718)
T PLN03073 254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSF 333 (718)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCC
Confidence 222221111 12222221111000 0111223455566667777788899999999999999
Q ss_pred ChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEE
Q psy11936 282 SRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIH 361 (548)
Q Consensus 282 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~ 361 (548)
.....++++.+|||||||||+||+||+.+|+||||||||||||+.++.||.++|+.++.|||+||||++++..+||+|++
T Consensus 334 ~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~d~i~~ 413 (718)
T PLN03073 334 TPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDILH 413 (718)
T ss_pred ChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEE
Confidence 86677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCc
Q psy11936 362 LDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPT 441 (548)
Q Consensus 362 L~~G~i~~~~g~y~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~ 441 (548)
|++|++..|.|+|+.|...+.++...+.+.|+.++++++++++++.+.+..+.+. .+.+++.+.... +...
T Consensus 414 l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~e~~~k~~~~l~~~i~~~~~~a~~~------~~~~s~~k~l~~---~~~~ 484 (718)
T PLN03073 414 LHGQKLVTYKGDYDTFERTREEQLKNQQKAFESNERSRSHMQAFIDKFRYNAKRA------SLVQSRIKALDR---LGHV 484 (718)
T ss_pred EECCEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh------HHHhhcchHHHH---Hhhh
Confidence 9999999999999999998888888888999999999999988776544322111 111111111110 0000
Q ss_pred ccccCCccceeeeecCCCC-CCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCC
Q psy11936 442 ELIQKPREYVVKFSFPDPP-PLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPL 515 (548)
Q Consensus 442 e~~~~~~~~~~~~~f~~~~-~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~ 515 (548)
+.. +.+....+.||.+. ..++++|++++|+++|++.+++|+|+||.. .|..+.|.||| |||+|+|+|.++|+
T Consensus 485 ~~~--~~~~~~~~~~~~~~~~~~~~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~ 562 (718)
T PLN03073 485 DAV--VNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPS 562 (718)
T ss_pred hcc--ccCCCceeecCCCccCCCCceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 000 01123345665432 245689999999999965457999999985 89999999996 89999999999999
Q ss_pred CCCeeeccceeeeeeeccc
Q psy11936 516 QPPILGLHNVTFAYEGMKP 534 (548)
Q Consensus 516 ~~~~~~~~n~~~~y~~~~~ 534 (548)
+|.|+.+.+.+|+|+.|++
T Consensus 563 ~G~I~~~~~~~igyv~Q~~ 581 (718)
T PLN03073 563 SGTVFRSAKVRMAVFSQHH 581 (718)
T ss_pred CceEEECCceeEEEEeccc
Confidence 9999998899999999987
No 5
>KOG0927|consensus
Probab=100.00 E-value=2.1e-59 Score=493.55 Aligned_cols=382 Identities=36% Similarity=0.616 Sum_probs=311.9
Q ss_pred cccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 144 AVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 144 ~~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
+..+.++|++++|.+..+++|++|++.+|+++||+|+|||||||+|++|+|...+.|.+..++...+++.......+..+
T Consensus 73 s~dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v 152 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAV 152 (614)
T ss_pred cccceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHH
Confidence 34689999999999999999999999999999999999999999999999998899999999999988876666666555
Q ss_pred HHh-hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 224 LKA-DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 224 ~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
+.. ...+..+......+.... .....+.+..++.++..++.+..+.++..+|..+||...+.++.+..|||||++|++
T Consensus 153 ~~~~~~e~~rle~~~E~l~~~~-d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~a 231 (614)
T KOG0927|consen 153 VMETDHERKRLEYLAEDLAQAC-DDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAA 231 (614)
T ss_pred hhhhHHHHHHHHHHHHHHHhhc-cchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHH
Confidence 421 111111111111111110 112334455677778888888899999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCC-eEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK-TLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMY 381 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~-TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~~~ 381 (548)
|||+|+.+|+||||||||||||++++.||.++|..+.. ++|+|||+.+|++.+|++|++|+++++++|.|||+.|...+
T Consensus 232 LAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy~~tr 311 (614)
T KOG0927|consen 232 LARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQYVKTR 311 (614)
T ss_pred HHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecccceeeecCCHHHHhhHH
Confidence 99999999999999999999999999999999999987 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCc-cceeeeecCCCC
Q psy11936 382 AQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPR-EYVVKFSFPDPP 460 (548)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~-~~~~~~~f~~~~ 460 (548)
.+....+.++|+++|+++.+++..+.+.-... +...+++++..+...... .....+++. +..+.|.||..+
T Consensus 312 ~E~~~~q~K~~~kqqk~i~~~K~~ia~~g~g~-----a~~~rka~s~~K~~~km~---~~gL~ek~~~~k~l~~~f~~vg 383 (614)
T KOG0927|consen 312 SELEENQMKAYEKQQKQIAHMKDLIARFGHGS-----AKLGRKAQSKEKTLDKME---ADGLTEKVVGEKVLSFRFPEVG 383 (614)
T ss_pred HHHhHHHHHHHHHHHhHHHHhhHHHHhhcccc-----hhhhHHHhhhhhhHHHHh---hccccccccCCceEEEEccccc
Confidence 99999999999999999999998876543210 011123333333332211 122233333 467899999999
Q ss_pred CCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeeeeeccc
Q psy11936 461 PLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAYEGMKP 534 (548)
Q Consensus 461 ~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y~~~~~ 534 (548)
..++|++.+.||+|+|+++..+|++++|-. -+-++++.||| |||+|+|+|++.|+.|.+-.|+-+.++||.||-
T Consensus 384 ~~p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~ 462 (614)
T KOG0927|consen 384 KIPPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHL 462 (614)
T ss_pred CCCCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhh
Confidence 999999999999999987667999999963 66777788886 889999999999999999999888999999985
No 6
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.3e-56 Score=504.65 Aligned_cols=372 Identities=24% Similarity=0.369 Sum_probs=272.7
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeec--------cCc-
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVV--------ADD- 216 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~--------~~~- 216 (548)
+|+++||+++|+++.+|+||||+|.+|+++||||||||||||||++|+|. ..|.+|.|.+.+.... ...
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~--~~p~~G~I~~~~~~~~~~l~q~~~~~~~ 80 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGE--VLLDDGRIIYEQDLIVARLQQDPPRNVE 80 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCC--CCCCCeEEEeCCCCEEEEeccCCCCCCC
Confidence 58999999999999999999999999999999999999999999999985 4677888877653110 000
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHH---HHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCC
Q psy11936 217 LTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLK---EIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNF 293 (548)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~---~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~L 293 (548)
......+................+..........+++. .+...+...+.+....++..+|..+||. .++++.+|
T Consensus 81 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~---~~~~~~~L 157 (635)
T PRK11147 81 GTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD---PDAALSSL 157 (635)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC---CCCchhhc
Confidence 01111110000000000000000000000001111111 1111222234455677899999999996 27899999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCC
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~ 373 (548)
||||||||+|||||+.+|+||||||||||||+.++.||.++|.++++|||+||||++|+..+||+|++|++|+++.|.|+
T Consensus 158 SgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g~ 237 (635)
T PRK11147 158 SGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGN 237 (635)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceee
Q psy11936 374 YSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVK 453 (548)
Q Consensus 374 y~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~ 453 (548)
|+.|..+++.+.......++.+++++++++.++.+ ...+.+. ++ +++.+....... ...+. .+....+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~------~~-~~r~~~~~~~~~-~~~~~--~~~~~~~~ 306 (635)
T PRK11147 238 YDQYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQ-GIKARRT------RN-EGRVRALKALRR-ERSER--REVMGTAK 306 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhh------hH-HHHHHHHHHhhh-hhccc--cccCCcee
Confidence 99999988887777778888888888888777654 1111111 01 222221111000 00110 00123456
Q ss_pred eecCCCCCCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeee
Q psy11936 454 FSFPDPPPLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFA 528 (548)
Q Consensus 454 ~~f~~~~~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~ 528 (548)
|.|+.+.+.++++|+++||+++|++ +++|+|+||+. .|..+.|.||| |||+|+|+|.++|++|.|+.++++.|+
T Consensus 307 ~~~~~~~~~~~~~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~ 385 (635)
T PRK11147 307 MQVEEASRSGKIVFEMENVNYQIDG-KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVA 385 (635)
T ss_pred EEeCCCCCCCCceEEEeeeEEEECC-eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEE
Confidence 7787776778899999999999965 67999999985 89999999997 899999999999999999989999999
Q ss_pred eeeccc
Q psy11936 529 YEGMKP 534 (548)
Q Consensus 529 y~~~~~ 534 (548)
|+.|++
T Consensus 386 y~~q~~ 391 (635)
T PRK11147 386 YFDQHR 391 (635)
T ss_pred EEeCcc
Confidence 999986
No 7
>KOG0062|consensus
Probab=100.00 E-value=2.5e-58 Score=483.13 Aligned_cols=351 Identities=40% Similarity=0.598 Sum_probs=281.3
Q ss_pred cccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 144 AVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 144 ~~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
+.+|.+.+++.+||++.+|++.++++..|.+|||||+||+|||||||+|+. +..+++...|++..........+
T Consensus 78 ~~Di~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~~~~ 151 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEALQSV 151 (582)
T ss_pred ccceeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHHhhh
Confidence 457999999999999999999999999999999999999999999999985 23334445556655554444444
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
+..+..+..++.+...+.. .-...+....+|..+||++++..+++.+||||||+|++|
T Consensus 152 l~~D~~~~dfl~~e~~l~~----------------------~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaL 209 (582)
T KOG0062|consen 152 LESDTERLDFLAEEKELLA----------------------GLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLAL 209 (582)
T ss_pred hhccHHHHHHHHhhhhhhc----------------------cchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHH
Confidence 4444333333322211100 001122233489999999999999999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHHHHHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQ 383 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~~~~~ 383 (548)
||||+.+||||||||||||||..++.||+++|..|+.|+|+||||+.|++.+|+.||++++-++-+|.|||+.|.+.+.+
T Consensus 210 ARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~k~E 289 (582)
T KOG0062|consen 210 ARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKTKPE 289 (582)
T ss_pred HHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCc-cceeeeecCC-CCC
Q psy11936 384 KSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPR-EYVVKFSFPD-PPP 461 (548)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~-~~~~~~~f~~-~~~ 461 (548)
+...++++|+.+.+..++++.++.+++..++++ ...++|.++.. +......+. +..+.|.||. ...
T Consensus 290 ~~~n~qrefe~q~~~R~h~q~fid~FrYna~ra------~svqSRIk~L~------kl~~lk~~~~~~~~~~~fP~~~e~ 357 (582)
T KOG0062|consen 290 AKKNQQREFEVQMKYRAHLQVFIDKFRYNAARA------SSVQSRIKMLG------KLPALKSTLIEVLIGFLFPTEGEV 357 (582)
T ss_pred hhhhhhhhcchHHHHHHHHHHHHHHhccCcccc------hhHHHHHHHhc------cCCCCCccceecccceecCCCCCc
Confidence 999999999999999999999988776432221 12234444332 222222221 3467899998 456
Q ss_pred CCCCcEEEEeeEEEeCCCC-cccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeeeeeccc
Q psy11936 462 LQPPILGLHNVTFAYEGMK-PLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAYEGMKP 534 (548)
Q Consensus 462 ~~~~vL~l~~vs~~Y~~~~-~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y~~~~~ 534 (548)
.+.|++++.+|+|.|+.+. +++.++++.. ..-++-+.|+| ||++|+++|++.|+.|.+-.|-++||+||+||-
T Consensus 358 ~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhh 436 (582)
T KOG0062|consen 358 LSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHH 436 (582)
T ss_pred CCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhh
Confidence 7899999999999998666 6899988864 55667777775 788899999999999999999999999999985
No 8
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-52 Score=458.09 Aligned_cols=377 Identities=24% Similarity=0.397 Sum_probs=259.6
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEec--------eeecc-Cc
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCE--------QEVVA-DD 216 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~--------q~i~~-~~ 216 (548)
+|+++||+++|+++++|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|.|.+.+ |+... ..
T Consensus 1 ml~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl--~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 78 (530)
T PRK15064 1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGD--LEPSAGNVSLDPNERLGKLRQDQFAFEE 78 (530)
T ss_pred CEEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEecCCCEEEEEeccCCcCCC
Confidence 38899999999988999999999999999999999999999999999985 356677766643 22111 11
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHhhhc-CChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCH
Q psy11936 217 LTAVESVLKADVKRTELLAECAKLEAAD-FSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSG 295 (548)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 295 (548)
.+..+.+..................... ........+......+.....+....++.++|+.+|+.....++++.+|||
T Consensus 79 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSg 158 (530)
T PRK15064 79 FTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAP 158 (530)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCH
Confidence 1221111100000000000000000000 000000111111222233334445567889999999975444678999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHH
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~ 375 (548)
||||||+|||||+.+|+||||||||||||+.++.||.++|.+.+.|||+||||++++..+||+|++|++|+++.|.|+|+
T Consensus 159 Gq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~ 238 (530)
T PRK15064 159 GWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNYD 238 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCCHH
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999987899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceeeee
Q psy11936 376 MFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFS 455 (548)
Q Consensus 376 ~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~ 455 (548)
.|..++........++++.+++++++++.+..+........ ..++.+.+..... ........ ......+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~ 308 (530)
T PRK15064 239 EYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKA------KQATSRAKQIDKI-KLEEVKPS---SRQNPFIR 308 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhh------HHHHHHHHHHhhc-cccccCCc---cccCceee
Confidence 99887766555566667777777776665433211100000 0011111111100 00000000 00111234
Q ss_pred cCCCCCCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeeee
Q psy11936 456 FPDPPPLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAYE 530 (548)
Q Consensus 456 f~~~~~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y~ 530 (548)
|+.....++++|+++||+++|++ +.+|+|+||.. .|+.+.|.||| |||+|+|+|.++|++|.|+.+.+.+++|+
T Consensus 309 ~~~~~~~~~~~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~ 387 (530)
T PRK15064 309 FEQDKKLHRNALEVENLTKGFDN-GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYY 387 (530)
T ss_pred CCCCCCCCCceEEEEeeEEeeCC-ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEE
Confidence 44444446789999999999965 67999999985 89999999996 89999999999999999988878899999
Q ss_pred eccce
Q psy11936 531 GMKPL 535 (548)
Q Consensus 531 ~~~~~ 535 (548)
.|+|.
T Consensus 388 ~q~~~ 392 (530)
T PRK15064 388 AQDHA 392 (530)
T ss_pred ccccc
Confidence 99973
No 9
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.4e-51 Score=457.61 Aligned_cols=370 Identities=25% Similarity=0.323 Sum_probs=260.0
Q ss_pred cEEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEE--------EeceeeccC-
Q psy11936 146 DIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL--------YCEQEVVAD- 215 (548)
Q Consensus 146 ~I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~--------~~~q~i~~~- 215 (548)
+|+++||+++|+ ++.+|+|+||+|.+|+++||+|||||||||||++|+|.. .|.+|.|. |..|+....
T Consensus 6 ~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~--~p~~G~i~~~~~~~i~~v~Q~~~~~~ 83 (556)
T PRK11819 6 IYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD--KEFEGEARPAPGIKVGYLPQEPQLDP 83 (556)
T ss_pred EEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEecCCCEEEEEecCCCCCC
Confidence 699999999998 788999999999999999999999999999999999853 45566654 444443221
Q ss_pred chhHHHHHHHhhHHHHHHHHHHHHHh-h-hcCCh---hHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhccc
Q psy11936 216 DLTAVESVLKADVKRTELLAECAKLE-A-ADFSS---EQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRAT 290 (548)
Q Consensus 216 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~-~~~~~---~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~ 290 (548)
..+..+.+.................. . ..... ........+.+.+...+.+....++..+|..+|+. . .++++
T Consensus 84 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~-~~~~~ 161 (556)
T PRK11819 84 EKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP-P-WDAKV 161 (556)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC-c-ccCch
Confidence 12222221100000000000000000 0 00000 00011122233344445555677899999999996 3 58899
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 291 KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 291 ~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
.+|||||||||+|||||+.+|+||||||||||||+.++.||.++|+++++|||+||||++++..+||+|++|++|+++.|
T Consensus 162 ~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~i~~~ 241 (556)
T PRK11819 162 TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPW 241 (556)
T ss_pred hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCEEEEe
Confidence 99999999999999999999999999999999999999999999999989999999999999999999999999999889
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-HhhhcccCCCcccccCCcc
Q psy11936 371 KGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSK-LQKADEDQGPTELIQKPRE 449 (548)
Q Consensus 371 ~g~y~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k-~~~~~~~~~~~e~~~~~~~ 449 (548)
.|+|+.|...+..........+++++++++++..+....... .. ...+.+.+ ..+.... .. ... .
T Consensus 242 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~-~~---~~~--~ 307 (556)
T PRK11819 242 EGNYSSWLEQKAKRLAQEEKQEAARQKALKRELEWVRQSPKA-RQ-------AKSKARLARYEELLSE-EY---QKR--N 307 (556)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hH-------HHHHHHHHHHHHhhcc-cc---ccc--C
Confidence 999999988776555555556666666666555543321100 00 00011111 0010000 00 000 1
Q ss_pred ceeeeecCCCCCCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccc
Q psy11936 450 YVVKFSFPDPPPLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHN 524 (548)
Q Consensus 450 ~~~~~~f~~~~~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n 524 (548)
....+.|+.....++++|++++|+++|++ +++|+|+||+. .|+.+.|.||| |||+|+|+|.++|++|.|+.+++
T Consensus 308 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~ 386 (556)
T PRK11819 308 ETNEIFIPPGPRLGDKVIEAENLSKSFGD-RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGET 386 (556)
T ss_pred CCceeecCCCCCCCCeEEEEEeEEEEECC-eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc
Confidence 12234455444445789999999999965 67999999985 89999999996 89999999999999999998889
Q ss_pred eeeeeeeccc
Q psy11936 525 VTFAYEGMKP 534 (548)
Q Consensus 525 ~~~~y~~~~~ 534 (548)
++|+|+.|.+
T Consensus 387 ~~i~~v~q~~ 396 (556)
T PRK11819 387 VKLAYVDQSR 396 (556)
T ss_pred eEEEEEeCch
Confidence 9999999996
No 10
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2.5e-51 Score=455.22 Aligned_cols=370 Identities=25% Similarity=0.309 Sum_probs=258.5
Q ss_pred cEEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEE--------eceeeccC-
Q psy11936 146 DIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILY--------CEQEVVAD- 215 (548)
Q Consensus 146 ~I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~--------~~q~i~~~- 215 (548)
+|+++||+++|+ ++++|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|.|.+ ..|.....
T Consensus 4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~--~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 81 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV--DKEFNGEARPAPGIKVGYLPQEPQLDP 81 (552)
T ss_pred EEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEecCCCEEEEEeccCCCCC
Confidence 589999999998 78899999999999999999999999999999999985 3456666544 44433221
Q ss_pred chhHHHHHHHhhHHHHHHHHHHHHH-hhhc-CChhH---HHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhccc
Q psy11936 216 DLTAVESVLKADVKRTELLAECAKL-EAAD-FSSEQ---QEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRAT 290 (548)
Q Consensus 216 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~-~~~~~---~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~ 290 (548)
..+..+.+................. .... ..... ......+.+.+...+.+....++.+++..+|+.. .++++
T Consensus 82 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~ 159 (552)
T TIGR03719 82 TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP--WDADV 159 (552)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc--ccCch
Confidence 1222222111000000000000000 0000 00000 0011223333444555556678889999999963 57899
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 291 KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 291 ~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
.+|||||||||+|||||+.+|+||||||||||||+.++.||.++|.++++|||+||||++++..+||+|++|++|+++.|
T Consensus 160 ~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g~i~~~ 239 (552)
T TIGR03719 160 TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPW 239 (552)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999999989999999999999999999999999999889
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-HhhhcccCCCcccccCCcc
Q psy11936 371 KGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSK-LQKADEDQGPTELIQKPRE 449 (548)
Q Consensus 371 ~g~y~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k-~~~~~~~~~~~e~~~~~~~ 449 (548)
.|+|+.|.+............++++++++.++..++.+.... ... ..+.+.+ ..+..+ ... ..+ +
T Consensus 240 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~--~~~---~~~-~ 305 (552)
T TIGR03719 240 EGNYSSWLEQKEKRLEQEEKEESARQKALKRELEWVRSSPKA-RQA-------KSKARLARYEELLS--QEF---QKR-N 305 (552)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHH-------HHHHHHHHHHhhhh--hcc---ccc-C
Confidence 999999988766555555556666666665554443221110 000 0000000 000000 000 000 0
Q ss_pred ceeeeecCCCCCCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccc
Q psy11936 450 YVVKFSFPDPPPLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHN 524 (548)
Q Consensus 450 ~~~~~~f~~~~~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n 524 (548)
....+.|+.+...++++|+++||+++|++ +++|+|+||+. .|+.+.|.||| |||+|+|+|.++|++|.|+.+++
T Consensus 306 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~ 384 (552)
T TIGR03719 306 ETAEIYIPPGPRLGDKVIEAENLSKGFGD-KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGET 384 (552)
T ss_pred CCceeecCCCCCCCCeEEEEeeEEEEECC-eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCc
Confidence 12234445443446789999999999965 67999999985 99999999996 89999999999999999988888
Q ss_pred eeeeeeeccc
Q psy11936 525 VTFAYEGMKP 534 (548)
Q Consensus 525 ~~~~y~~~~~ 534 (548)
++|+|+.|++
T Consensus 385 ~~i~~v~q~~ 394 (552)
T TIGR03719 385 VKLAYVDQSR 394 (552)
T ss_pred eEEEEEeCCc
Confidence 9999999996
No 11
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.2e-50 Score=382.94 Aligned_cols=221 Identities=24% Similarity=0.362 Sum_probs=181.1
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc-hhHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD-LTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~-~~~~~~~~ 224 (548)
+|+++||+++||+..+|++|||+|.+||+++||||||||||||||||.++ ..+++|.|.+.++.+.... ...++.
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~L--E~~~~G~I~i~g~~~~~~~~~~~~R~-- 77 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGL--EEPDSGSITVDGEDVGDKKDILKLRR-- 77 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCC--cCCCCceEEECCEeccchhhHHHHHH--
Confidence 58999999999999999999999999999999999999999999999974 5789999999997764322 222222
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
..++++|. .+.++..++.+|+....-........++++++.++|+++||.+ ..+.+|.+||||||||||||
T Consensus 78 -----~vGmVFQ~---fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~-ka~~yP~qLSGGQqQRVAIA 148 (240)
T COG1126 78 -----KVGMVFQQ---FNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLAD-KADAYPAQLSGGQQQRVAIA 148 (240)
T ss_pred -----hcCeeccc---ccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchh-hhhhCccccCcHHHHHHHHH
Confidence 22233222 2344566777776543333444555667888999999999985 57999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKK 379 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~ 379 (548)
|||+++|+++|+|||||+|||+.+..+.+.++++ +.|+|+|||++.|+..+||||++|++|+++..+.+-+.|.+
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~ 226 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence 9999999999999999999999998888877665 68999999999999999999999999999987655455543
No 12
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=5.2e-47 Score=417.96 Aligned_cols=321 Identities=20% Similarity=0.222 Sum_probs=226.1
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEece----------------
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQ---------------- 210 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q---------------- 210 (548)
|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|.....|.+|+|.+.+.
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~ 80 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGE 80 (520)
T ss_pred CEEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccc
Confidence 4689999999988999999999999999999999999999999999985212577899887521
Q ss_pred eec--cCch----hHHH----HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCC
Q psy11936 211 EVV--ADDL----TAVE----SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLG 280 (548)
Q Consensus 211 ~i~--~~~~----~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lg 280 (548)
.+. ..+. .... ...........++++. ........++.+++..... ...........++.++|+.+|
T Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~--~~~~~~~~tv~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQR--TFALYGDDTVLDNVLEALE-EIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred ccccccccccccchhhhccCHHHHHHhhhcEEEEecc--ccccCCCCCHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcC
Confidence 000 0000 0000 0000000001111110 0011122345555432111 111111223457889999999
Q ss_pred CChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhc
Q psy11936 281 FSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVC 356 (548)
Q Consensus 281 l~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~va 356 (548)
+.. ..++++.+|||||||||+|||||+.+|+|||||||||+||+.++.++.++|.++ +.|||+||||++++..+|
T Consensus 158 l~~-~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~ 236 (520)
T TIGR03269 158 LSH-RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLS 236 (520)
T ss_pred Chh-hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhc
Confidence 974 568899999999999999999999999999999999999999999998887654 579999999999999999
Q ss_pred CEEEEEeCCEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy11936 357 NEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADE 436 (548)
Q Consensus 357 drIi~L~~G~i~~~~g~y~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~ 436 (548)
|+|++|++|+++. .|+++.+..... ... . ..
T Consensus 237 d~i~~l~~G~i~~-~g~~~~~~~~~~---------------------~~~-------~---------------~~----- 267 (520)
T TIGR03269 237 DKAIWLENGEIKE-EGTPDEVVAVFM---------------------EGV-------S---------------EV----- 267 (520)
T ss_pred CEEEEEeCCEEee-ecCHHHHHHHHH---------------------hhc-------h---------------hh-----
Confidence 9999999999985 588876532100 000 0 00
Q ss_pred cCCCcccccCCccceeeeecCCCCCCCCCcEEEEeeEEEeCC----CCcccccCCccC-CCceeEeecCc----cceeec
Q psy11936 437 DQGPTELIQKPREYVVKFSFPDPPPLQPPILGLHNVTFAYEG----MKPLLMSKADED-QGPTELIQKPR----EYVVKF 507 (548)
Q Consensus 437 ~~~~~e~~~~~~~~~~~~~f~~~~~~~~~vL~l~~vs~~Y~~----~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~ 507 (548)
.. + .+.+.+.++|+++||+++|++ .+++|+|+||+. .|+.+.|.||| |||+|+
T Consensus 268 --~~------~----------~~~~~~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~ 329 (520)
T TIGR03269 268 --EK------E----------CEVEVGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKI 329 (520)
T ss_pred --cc------c----------cccCCCCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 00 0 000123568999999999952 257999999985 99999999996 899999
Q ss_pred cCCCCCCCCCCeeec--c---c-------------eeeeeeeccceeee
Q psy11936 508 SFPDPPPLQPPILGL--H---N-------------VTFAYEGMKPLLVD 538 (548)
Q Consensus 508 ~~~~~~~~~~~~~~~--~---n-------------~~~~y~~~~~~~~~ 538 (548)
|+|.++|++|+|+.. . + -+|+|+.|+|.+.+
T Consensus 330 l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~ 378 (520)
T TIGR03269 330 IAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYP 378 (520)
T ss_pred HhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCC
Confidence 999999999998752 1 1 13899999986543
No 13
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=4.3e-46 Score=407.80 Aligned_cols=318 Identities=19% Similarity=0.220 Sum_probs=223.5
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+||||||||||||+|+|. ..|.+|.|.+.++.+...........
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~--~~p~~G~i~~~~~~~~~~~~~~~~~~-- 78 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGE--LPLLSGERQSQFSHITRLSFEQLQKL-- 78 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc--CCCCCceEEECCcccccCCHHHHHHH--
Confidence 58999999999988899999999999999999999999999999999985 46788999887765432111111111
Q ss_pred hhHHHHHHHHHHHHHhhh-----cCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAA-----DFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~-----~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqR 300 (548)
..+..+....... .+..++.+++ . . ......++.++++.+|+.. ..++++.+||||||||
T Consensus 79 -----i~~~~q~~~~~~~~~~~~~~~~~~~~~~-------~-~-~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qr 143 (490)
T PRK10938 79 -----VSDEWQRNNTDMLSPGEDDTGRTTAEII-------Q-D-EVKDPARCEQLAQQFGITA-LLDRRFKYLSTGETRK 143 (490)
T ss_pred -----hceeccCcchhhcccchhhccccHHHhc-------c-c-chhHHHHHHHHHHHcCCHh-hhhCCcccCCHHHHHH
Confidence 1111111000000 0011111111 0 0 1123467889999999974 5799999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|+|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+.+
T Consensus 144 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~-~~~~~~ 222 (490)
T PRK10938 144 TLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAET-GEREEI 222 (490)
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEe-CCHHHH
Confidence 99999999999999999999999999999999999876 57999999999999999999999999999865 665543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceeeeecC
Q psy11936 378 KKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFP 457 (548)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f~ 457 (548)
.... .+..+.. ...... .... ...+. .+ +
T Consensus 223 ~~~~----------------~~~~~~~-----------------------~~~~~~-------~~~~-~~~~~--~~--~ 251 (490)
T PRK10938 223 LQQA----------------LVAQLAH-----------------------SEQLEG-------VQLP-EPDEP--SA--R 251 (490)
T ss_pred hcch----------------hhhhhhh-----------------------hhccCc-------cccC-ccccc--cc--c
Confidence 2100 0000000 000000 0000 00000 00 0
Q ss_pred CCCCCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCC-CCCCeeec-c-------
Q psy11936 458 DPPPLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPP-LQPPILGL-H------- 523 (548)
Q Consensus 458 ~~~~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~-~~~~~~~~-~------- 523 (548)
.....+.++|+++||+++|++ +.+|+|+||.. .|+.+.|.||| |||+|+|+|..+| ++|.|+.. +
T Consensus 252 ~~~~~~~~~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~ 330 (490)
T PRK10938 252 HALPANEPRIVLNNGVVSYND-RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGET 330 (490)
T ss_pred cccCCCCceEEEeceEEEECC-eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCC
Confidence 011124678999999999965 57999999985 99999999996 8999999998876 67876532 1
Q ss_pred ----ceeeeeeeccce
Q psy11936 524 ----NVTFAYEGMKPL 535 (548)
Q Consensus 524 ----n~~~~y~~~~~~ 535 (548)
+-.|+|+.|.|.
T Consensus 331 ~~~~~~~i~~v~q~~~ 346 (490)
T PRK10938 331 IWDIKKHIGYVSSSLH 346 (490)
T ss_pred HHHHHhhceEECHHHH
Confidence 124899999863
No 14
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=5.7e-46 Score=410.48 Aligned_cols=325 Identities=18% Similarity=0.219 Sum_probs=224.3
Q ss_pred cEEEEeEEEEeCC----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC---CCCeEEEEeceeeccCchh
Q psy11936 146 DIKVENFSISAKG----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV---PPNIDILYCEQEVVADDLT 218 (548)
Q Consensus 146 ~I~l~nls~~y~~----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~---~~~g~I~~~~q~i~~~~~~ 218 (548)
+|+++||+++|++ +.+|+++||+|.+|+++||+|||||||||||++|+|...+. |.+|+|.+.++++......
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 5899999999963 57999999999999999999999999999999999863211 2689999988876432211
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh--hhhhcccCCCCHH
Q psy11936 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR--AMQDRATKNFSGG 296 (548)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~--~~~~~~~~~LSGG 296 (548)
....... ...+++++.... ......++.+++.................++.++|+.+|+.. ...++++.+||||
T Consensus 85 ~~~~~~~---~~ig~v~Q~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgG 160 (529)
T PRK15134 85 TLRGVRG---NKIAMIFQEPMV-SLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGG 160 (529)
T ss_pred HHHHHhc---CceEEEecCchh-hcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHH
Confidence 1100000 011112211100 001112222222211100001112233567889999999974 2468899999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
|||||+|||||+.+|+||||||||++||+.++.+|.++|.++ +.|||+||||++++..+||+|++|++|+++.+ |
T Consensus 161 e~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~-g 239 (529)
T PRK15134 161 ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQ-N 239 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEe-C
Confidence 999999999999999999999999999999999999999763 67999999999999999999999999999876 4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCcccee
Q psy11936 373 NYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVV 452 (548)
Q Consensus 373 ~y~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~ 452 (548)
+..++..... ..+ . .. .... .. .. .+
T Consensus 240 ~~~~~~~~~~-------~~~------~---~~--------------------------~~~~--~~-~~----~~----- 265 (529)
T PRK15134 240 RAATLFSAPT-------HPY------T---QK--------------------------LLNS--EP-SG----DP----- 265 (529)
T ss_pred CHHHHhhCCC-------CHH------H---HH--------------------------HHHh--Cc-cc----cc-----
Confidence 4333211000 000 0 00 0000 00 00 00
Q ss_pred eeecCCCCCCCCCcEEEEeeEEEeCC----------CCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCC
Q psy11936 453 KFSFPDPPPLQPPILGLHNVTFAYEG----------MKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQP 517 (548)
Q Consensus 453 ~~~f~~~~~~~~~vL~l~~vs~~Y~~----------~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~ 517 (548)
.+. ...++++|+++||+++|+. ++.+|+|+||+. .|+.+.|.||| |||+|+|+|.++ ++|
T Consensus 266 ---~~~-~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G 340 (529)
T PRK15134 266 ---VPL-PEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQG 340 (529)
T ss_pred ---ccc-CCCCCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCc
Confidence 000 1124578999999999952 357999999986 99999999996 899999999985 788
Q ss_pred Ceee-ccce-------------eeeeeeccc
Q psy11936 518 PILG-LHNV-------------TFAYEGMKP 534 (548)
Q Consensus 518 ~~~~-~~n~-------------~~~y~~~~~ 534 (548)
.|+. ++++ .++|+.|+|
T Consensus 341 ~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~ 371 (529)
T PRK15134 341 EIWFDGQPLHNLNRRQLLPVRHRIQVVFQDP 371 (529)
T ss_pred EEEECCEEccccchhhHHHhhhceEEEEeCc
Confidence 8764 3332 489999997
No 15
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-46 Score=409.62 Aligned_cols=316 Identities=19% Similarity=0.164 Sum_probs=225.8
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+||||||||||||+|+|...+.|.+|.|.+.+.++......... .
T Consensus 5 ~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~---~ 81 (506)
T PRK13549 5 LLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTE---R 81 (506)
T ss_pred eEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHH---H
Confidence 5999999999998899999999999999999999999999999999998531114689999988776432211100 0
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcC---CCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG---ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~---~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
....++++.. ......++.+++..... ....+ ......++.++|+.+|+.. ..++++.+|||||||||+
T Consensus 82 ---~~i~~v~q~~---~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqrv~ 153 (506)
T PRK13549 82 ---AGIAIIHQEL---ALVKELSVLENIFLGNE-ITPGGIMDYDAMYLRAQKLLAQLKLDI-NPATPVGNLGLGQQQLVE 153 (506)
T ss_pred ---CCeEEEEecc---ccCCCCcHHHHhhhccc-ccccCCcCHHHHHHHHHHHHHHcCCCC-CcccchhhCCHHHHHHHH
Confidence 0111111111 11123344444321110 00001 1122356788999999974 578999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKK 379 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~ 379 (548)
|||||+.+|+|||||||||+||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.+ |+.+.+..
T Consensus 154 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~-~~~~~~~~ 232 (506)
T PRK13549 154 IAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGT-RPAAGMTE 232 (506)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeee-cccccCCH
Confidence 999999999999999999999999999999998765 57999999999999999999999999999865 44332210
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceeeeecCC-
Q psy11936 380 MYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFPD- 458 (548)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f~~- 458 (548)
. ... +... . ..... .+|.
T Consensus 233 ~----------------~~~---~~~~--------------------------~--~~~~~--------------~~~~~ 251 (506)
T PRK13549 233 D----------------DII---TMMV--------------------------G--RELTA--------------LYPRE 251 (506)
T ss_pred H----------------HHH---HHhh--------------------------C--cCccc--------------ccccc
Confidence 0 000 0000 0 00000 0000
Q ss_pred CCCCCCCcEEEEeeEEEeC--CCCcccccCCccC-CCceeEeecCc----cceeeccCCCCC-CCCCCeeec-cc-----
Q psy11936 459 PPPLQPPILGLHNVTFAYE--GMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPP-PLQPPILGL-HN----- 524 (548)
Q Consensus 459 ~~~~~~~vL~l~~vs~~Y~--~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~-~~~~~~~~~-~n----- 524 (548)
+...+.++|+++||+++|+ +++++|+|+||+. .|+.+.|.||| |||+|+|.|.++ |++|.|+.. .+
T Consensus 252 ~~~~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~ 331 (506)
T PRK13549 252 PHTIGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRN 331 (506)
T ss_pred ccCCCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCC
Confidence 0112456899999999995 2357999999985 99999999996 899999999988 599988743 22
Q ss_pred ------eeeeeeeccc
Q psy11936 525 ------VTFAYEGMKP 534 (548)
Q Consensus 525 ------~~~~y~~~~~ 534 (548)
..++|+.|+|
T Consensus 332 ~~~~~~~~i~~v~q~~ 347 (506)
T PRK13549 332 PQQAIAQGIAMVPEDR 347 (506)
T ss_pred HHHHHHCCCEEeCcch
Confidence 2389999996
No 16
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-45 Score=413.67 Aligned_cols=354 Identities=16% Similarity=0.145 Sum_probs=231.6
Q ss_pred ccEEEEeEEEEeCC----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc----
Q psy11936 145 VDIKVENFSISAKG----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD---- 216 (548)
Q Consensus 145 ~~I~l~nls~~y~~----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~---- 216 (548)
.+|+++||+++|++ .++|+||||+|.+|+++||||+|||||||||++|+|. ..|.+|.|.+.+..+...+
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gl--l~p~~G~i~~~g~~~~~~~~~~~ 88 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRL--LEQAGGLVQCDKMLLRRRSRQVI 88 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcC--CCCCCeEEEECCEEecccccccc
Confidence 36999999999963 4799999999999999999999999999999999985 3577899988776442110
Q ss_pred -hhHHH-HHHHhhH-HHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh--hhhhcccC
Q psy11936 217 -LTAVE-SVLKADV-KRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR--AMQDRATK 291 (548)
Q Consensus 217 -~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~--~~~~~~~~ 291 (548)
..... ....... ...+++.+... .......++.+++.................++.++|+.+||.. ..+++++.
T Consensus 89 ~~~~~~~~~~~~~r~~~ig~v~Q~~~-~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~ 167 (623)
T PRK10261 89 ELSEQSAAQMRHVRGADMAMIFQEPM-TSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPH 167 (623)
T ss_pred ccccCCHHHHHHHhCCCEEEEEeCch-hhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCc
Confidence 00000 0000000 01112222110 0112234566655432211011122234467889999999963 35789999
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 292 ~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|++
T Consensus 168 ~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i 247 (623)
T PRK10261 168 QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEA 247 (623)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCee
Confidence 99999999999999999999999999999999999988888887654 57999999999999999999999999999
Q ss_pred EEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCC
Q psy11936 368 YYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKP 447 (548)
Q Consensus 368 ~~~~g~y~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~ 447 (548)
+. .|+++.+..... ..|. ..+......... . ..+ .... ....... ..+
T Consensus 248 ~~-~g~~~~~~~~~~-------~~~~------~~l~~~~~~~~~--~-----------~~~-~~~~---~~~~~~~-~~~ 295 (623)
T PRK10261 248 VE-TGSVEQIFHAPQ-------HPYT------RALLAAVPQLGA--M-----------KGL-DYPR---RFPLISL-EHP 295 (623)
T ss_pred cc-cCCHHHhhcCCC-------Chhh------hhhhhccCcccc--c-----------ccc-cCCc---ccccccc-ccc
Confidence 86 577766532100 0000 000000000000 0 000 0000 0000000 000
Q ss_pred ccceeeeecCCCCCCCCCcEEEEeeEEEeCC----------CCcccccCCccC-CCceeEeecCc----cceeeccCCCC
Q psy11936 448 REYVVKFSFPDPPPLQPPILGLHNVTFAYEG----------MKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDP 512 (548)
Q Consensus 448 ~~~~~~~~f~~~~~~~~~vL~l~~vs~~Y~~----------~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~ 512 (548)
.. .....++.....+.++|+++||+++|+. ...+|+||||+. .|+.+.|.||| |||+|+|+|.+
T Consensus 296 ~~-~~~~~~~~~~~~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~ 374 (623)
T PRK10261 296 AK-QEPPIEQDTVVDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLV 374 (623)
T ss_pred cc-cCcccccccccCCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 00 0000111111235679999999999962 146999999985 99999999996 89999999999
Q ss_pred CCCCCCeee-ccce-------------eeeeeeccc
Q psy11936 513 PPLQPPILG-LHNV-------------TFAYEGMKP 534 (548)
Q Consensus 513 ~~~~~~~~~-~~n~-------------~~~y~~~~~ 534 (548)
+|++|.|+. +.++ .|+|+.|+|
T Consensus 375 ~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~ 410 (623)
T PRK10261 375 ESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDP 410 (623)
T ss_pred CCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCc
Confidence 999998764 3322 489999998
No 17
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-45 Score=358.95 Aligned_cols=218 Identities=26% Similarity=0.340 Sum_probs=184.3
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++|||+.|+++.+++|+||+|+.|++++|||||||||||+||+|.++ ..|++|.|.+++.++...+...++..++
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrL--iept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRL--IEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcc--cCCCCceEEECCeecccCCHHHHHHhhh
Confidence 58899999999999999999999999999999999999999999999974 5799999999999987766655555555
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh-hhhhcccCCCCHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR-AMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~-~~~~~~~~~LSGGqkqRvaLA 304 (548)
+..+..++ ++.+++.+|+..+- .+...+......++.++|..+||+. .+.+|+|++|||||+|||.+|
T Consensus 79 YviQqigL----------FPh~Tv~eNIa~VP-~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~ 147 (309)
T COG1125 79 YVIQQIGL----------FPHLTVAENIATVP-KLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVA 147 (309)
T ss_pred hhhhhccc----------CCCccHHHHHHhhh-hhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHH
Confidence 54443333 44667777765432 2333334456788999999999985 589999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG----WKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~----~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
|||+.+|+|||+|||+++|||.++..|.+.+.+ +++|||+||||++++.+++|||++|+.|+++.|..+-+.
T Consensus 148 RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~i 223 (309)
T COG1125 148 RALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEI 223 (309)
T ss_pred HHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHH
Confidence 999999999999999999999998888777654 578999999999999999999999999999999665443
No 18
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2e-45 Score=403.53 Aligned_cols=317 Identities=17% Similarity=0.184 Sum_probs=223.3
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
.|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|...+.|.+|.|.+.++.+........ .
T Consensus 1 ~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~---~- 76 (500)
T TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDT---E- 76 (500)
T ss_pred CEEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHH---H-
Confidence 378999999999888999999999999999999999999999999999853111368999998887643221110 0
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHh----cCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA----IGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~----~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
.....++++.. ......++.+++.... .+.. ........++.++|+.+|+.....++++.+|||||||||
T Consensus 77 --~~~i~~v~q~~---~~~~~~tv~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv 150 (500)
T TIGR02633 77 --RAGIVIIHQEL---TLVPELSVAENIFLGN-EITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLV 150 (500)
T ss_pred --hCCEEEEeecc---ccCCCCcHHHHHHhhc-cccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHH
Confidence 00111222211 1112234444432110 0000 001122456788999999974333678999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHH
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~ 378 (548)
+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.++.. ..+.
T Consensus 151 ~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~-~~~~ 229 (500)
T TIGR02633 151 EIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDM-STMS 229 (500)
T ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCc-ccCC
Confidence 9999999999999999999999999999999998764 57999999999999999999999999999865322 2110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceeeeecCC
Q psy11936 379 KMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFPD 458 (548)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f~~ 458 (548)
.. ..+ .. ... .. .. . .++.
T Consensus 230 ~~----------------~~~---~~--------------------------~~~--~~---~~---~--------~~~~ 248 (500)
T TIGR02633 230 ED----------------DII---TM--------------------------MVG--RE---IT---S--------LYPH 248 (500)
T ss_pred HH----------------HHH---HH--------------------------HhC--cc---cc---c--------cccc
Confidence 00 000 00 000 00 00 0 0000
Q ss_pred -CCCCCCCcEEEEeeEEEeC--CCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCC-CCCCeeec-cce---
Q psy11936 459 -PPPLQPPILGLHNVTFAYE--GMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPP-LQPPILGL-HNV--- 525 (548)
Q Consensus 459 -~~~~~~~vL~l~~vs~~Y~--~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~-~~~~~~~~-~n~--- 525 (548)
+.+.++++|+++|++++|+ +++.+|+|+||+. .|+.+.|.||| |||+|+|+|.++| ++|+|+.. .++
T Consensus 249 ~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~ 328 (500)
T TIGR02633 249 EPHEIGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIR 328 (500)
T ss_pred cccCCCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCC
Confidence 1112456899999999994 2357999999985 99999999996 8999999999885 88988753 222
Q ss_pred --------eeeeeeccc
Q psy11936 526 --------TFAYEGMKP 534 (548)
Q Consensus 526 --------~~~y~~~~~ 534 (548)
.++|+.|.+
T Consensus 329 ~~~~~~~~~i~~v~q~~ 345 (500)
T TIGR02633 329 NPAQAIRAGIAMVPEDR 345 (500)
T ss_pred CHHHHHhCCCEEcCcch
Confidence 389999996
No 19
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-45 Score=405.01 Aligned_cols=316 Identities=16% Similarity=0.128 Sum_probs=226.3
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++.........
T Consensus 5 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl--~~p~~G~i~~~g~~i~~~~~~~~~---- 78 (510)
T PRK09700 5 YISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGI--HEPTKGTITINNINYNKLDHKLAA---- 78 (510)
T ss_pred eEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC--cCCCccEEEECCEECCCCCHHHHH----
Confidence 58999999999988999999999999999999999999999999999985 367889999988776432211100
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHH-hcCC-----CChHHHHHHHHHhCCCChhhhhcccCCCCHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELK-AIGA-----DSAEPRARRILAGLGFSRAMQDRATKNFSGGWRM 299 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~-----~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkq 299 (548)
.....++++.. ......++.+++........ ..+. .....++.++|+.+|+.. ..++++.+|||||||
T Consensus 79 --~~~i~~v~q~~---~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~q 152 (510)
T PRK09700 79 --QLGIGIIYQEL---SVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV-DLDEKVANLSISHKQ 152 (510)
T ss_pred --HCCeEEEeecc---cccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCC-CcccchhhCCHHHHH
Confidence 00111121111 11122344444321000000 0010 112456788999999974 578999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 300 RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 300 RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++. .|++++
T Consensus 153 rv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~ 231 (510)
T PRK09700 153 MLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVC-SGMVSD 231 (510)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEee-ecchhh
Confidence 999999999999999999999999999999999998765 5799999999999999999999999999974 577665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceeeeec
Q psy11936 377 FKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSF 456 (548)
Q Consensus 377 f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f 456 (548)
+.... .. +..... .... .. .. ..
T Consensus 232 ~~~~~----------------~~---~~~~~~---------------------~~~~---~~--~~------------~~ 254 (510)
T PRK09700 232 VSNDD----------------IV---RLMVGR---------------------ELQN---RF--NA------------MK 254 (510)
T ss_pred CCHHH----------------HH---HHhcCC---------------------Cccc---cc--cc------------cc
Confidence 42100 00 000000 0000 00 00 00
Q ss_pred CC-CCCCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeecc-ce----
Q psy11936 457 PD-PPPLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLH-NV---- 525 (548)
Q Consensus 457 ~~-~~~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~-n~---- 525 (548)
+. ....++++|+++||++.|. .+|+|+||+. .|+.+.|.||| |||+|+|.|.++|++|.|+.+. ++
T Consensus 255 ~~~~~~~~~~~l~~~~l~~~~~---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~ 331 (510)
T PRK09700 255 ENVSNLAHETVFEVRNVTSRDR---KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRS 331 (510)
T ss_pred cccccCCCCcEEEEeCccccCC---CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCC
Confidence 00 0112456899999999873 3899999985 89999999996 8999999999999999987532 32
Q ss_pred -------eeeeeeccc
Q psy11936 526 -------TFAYEGMKP 534 (548)
Q Consensus 526 -------~~~y~~~~~ 534 (548)
.++|+.|.|
T Consensus 332 ~~~~~~~~i~~v~q~~ 347 (510)
T PRK09700 332 PLDAVKKGMAYITESR 347 (510)
T ss_pred HHHHHHCCcEEccCcc
Confidence 489999974
No 20
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=4.3e-45 Score=401.79 Aligned_cols=314 Identities=15% Similarity=0.151 Sum_probs=226.7
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|.|.+.+..+..........
T Consensus 11 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~~--- 85 (510)
T PRK15439 11 LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGI--VPPDSGTLEIGGNPCARLTPAKAHQ--- 85 (510)
T ss_pred eEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEECCCCCHHHHHh---
Confidence 59999999999988999999999999999999999999999999999985 4678899999887664322111000
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
....++.+.. ......++.+++.... ........++.++|+.+|+.. ..++++.+|||||||||+|||
T Consensus 86 ---~~i~~v~q~~---~~~~~~tv~e~l~~~~-----~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~ 153 (510)
T PRK15439 86 ---LGIYLVPQEP---LLFPNLSVKENILFGL-----PKRQASMQKMKQLLAALGCQL-DLDSSAGSLEVADRQIVEILR 153 (510)
T ss_pred ---CCEEEEeccC---ccCCCCcHHHHhhccc-----ccchHHHHHHHHHHHHcCCCc-cccCChhhCCHHHHHHHHHHH
Confidence 0011112111 1122334444432110 011123467888999999974 568999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHHHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYA 382 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~~~~ 382 (548)
||+.+|+||||||||++||+.++.+|.++|+++ +.|||+||||++++..+||+|++|++|+++. .|+++.+.....
T Consensus 154 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~~~~~ 232 (510)
T PRK15439 154 GLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIAL-SGKTADLSTDDI 232 (510)
T ss_pred HHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ecChHHcCHHHH
Confidence 999999999999999999999999999998765 5799999999999999999999999999985 688877642100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceeeeecCC---C
Q psy11936 383 QKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFPD---P 459 (548)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f~~---~ 459 (548)
. ..+. .. .. . ... ... ....+.+|. +
T Consensus 233 ------~----------~~~~--~~-~~----------------~-~~~-------~~~--------~~~~~~~~~~~~~ 261 (510)
T PRK15439 233 ------I----------QAIT--PA-AR----------------E-KSL-------SAS--------QKLWLELPGNRRQ 261 (510)
T ss_pred ------H----------HHHh--Cc-cc----------------c-ccc-------ccc--------ccccccccccccc
Confidence 0 0000 00 00 0 000 000 000111221 1
Q ss_pred CCCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce--------
Q psy11936 460 PPLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV-------- 525 (548)
Q Consensus 460 ~~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~-------- 525 (548)
.+.++++|+++|+++ .+|+++||.. .|+.+.|.||| |||+|+|+|.++|++|.|+. ++++
T Consensus 262 ~~~~~~~l~~~~l~~------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~ 335 (510)
T PRK15439 262 QAAGAPVLTVEDLTG------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQR 335 (510)
T ss_pred cCCCCceEEEeCCCC------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHH
Confidence 123567899999994 1699999985 89999999996 89999999999999998865 3333
Q ss_pred ---eeeeeeccc
Q psy11936 526 ---TFAYEGMKP 534 (548)
Q Consensus 526 ---~~~y~~~~~ 534 (548)
.|+|+.|.|
T Consensus 336 ~~~~i~~v~q~~ 347 (510)
T PRK15439 336 LARGLVYLPEDR 347 (510)
T ss_pred HhCCcEECCCCh
Confidence 489999985
No 21
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=4.3e-45 Score=393.05 Aligned_cols=322 Identities=18% Similarity=0.250 Sum_probs=226.5
Q ss_pred cEEEEeEEEEeCCc----eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCC---CCeEEEEeceeeccCchh
Q psy11936 146 DIKVENFSISAKGN----DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVP---PNIDILYCEQEVVADDLT 218 (548)
Q Consensus 146 ~I~l~nls~~y~~~----~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~---~~g~I~~~~q~i~~~~~~ 218 (548)
.|+++||++.|... .+++||||+|.+||++||||.|||||||+.++|.|.. +.+ .+|+|.|.++++......
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll-~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLL-PEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccC-CCCCcccceEEEECCcchhcCCHH
Confidence 69999999999543 5899999999999999999999999999999999963 333 379999999877554433
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhh-hcccCCCCHHH
Q psy11936 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQ-DRATKNFSGGW 297 (548)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~-~~~~~~LSGGq 297 (548)
..+.+.+. ...+++|.. +....+..+...++.+++.........++..++.++|+.+||++... +++|++|||||
T Consensus 84 ~~r~~rg~---~Ia~i~Q~p-~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~ 159 (539)
T COG1123 84 EMRKLRGK---RIAMIFQDP-MTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGM 159 (539)
T ss_pred HHHHhccc---cEEEEecCc-hhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchH
Confidence 22221111 112222211 01111223344444433322211223456778899999999986544 46999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCC
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~ 373 (548)
||||.||+||+++|+|||+||||++||+.++..+.++|+++ +.++|+||||+..+..+||||++|.+|++++.+..
T Consensus 160 rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~ 239 (539)
T COG1123 160 RQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPT 239 (539)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCH
Confidence 99999999999999999999999999999999999988764 68999999999999999999999999999997544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceee
Q psy11936 374 YSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVK 453 (548)
Q Consensus 374 y~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~ 453 (548)
-+.|.+..... ...+.......... ....
T Consensus 240 ~~i~~~p~hpY-------------------------------------------T~~Ll~a~p~~~~~--------~~~~ 268 (539)
T COG1123 240 EEILSNPQHPY-------------------------------------------TRGLLAAVPRLGDE--------KIIR 268 (539)
T ss_pred HHHHhccCCcc-------------------------------------------cHHHHhhCCCcccc--------cccc
Confidence 44332211000 00000000000000 0000
Q ss_pred eecCCCCCCCCCcEEEEeeEEEeCC------C----CcccccCCccC-CCceeEeecC----ccceeeccCCCCCCCCCC
Q psy11936 454 FSFPDPPPLQPPILGLHNVTFAYEG------M----KPLLMSKADED-QGPTELIQKP----REYVVKFSFPDPPPLQPP 518 (548)
Q Consensus 454 ~~f~~~~~~~~~vL~l~~vs~~Y~~------~----~~ll~~v~~~~-~g~~~~i~~~----~~~~~~~~~~~~~~~~~~ 518 (548)
.....+. .+.++|+++||++.|.. . ..+++||||.. .|+|..|.|. +|||.|+|+|..+|++|+
T Consensus 269 ~~~~~~~-~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~ 347 (539)
T COG1123 269 LPRRGPL-RAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGS 347 (539)
T ss_pred ccccccc-ccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 0000111 16799999999999973 1 24799999985 9999999997 699999999999999997
Q ss_pred eee-ccc
Q psy11936 519 ILG-LHN 524 (548)
Q Consensus 519 ~~~-~~n 524 (548)
|+. +++
T Consensus 348 i~~~g~~ 354 (539)
T COG1123 348 IIFDGQD 354 (539)
T ss_pred EEEeCcc
Confidence 543 555
No 22
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.2e-45 Score=365.24 Aligned_cols=225 Identities=25% Similarity=0.341 Sum_probs=183.5
Q ss_pred cEEEEeEEEEeCC-----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHH
Q psy11936 146 DIKVENFSISAKG-----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~-----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~ 220 (548)
+|++++||+.|.. ..+|+||||+|++|+++||||.||||||||+|||.+ +..|++|+|.++++++...+...+
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~--Le~PtsG~v~v~G~di~~l~~~~L 78 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINL--LERPTSGSVFVDGQDLTALSEAEL 78 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhc--cCCCCCceEEEcCEecccCChHHH
Confidence 5899999999975 368999999999999999999999999999999997 468999999999988865443332
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqR 300 (548)
+. ..+..+++++.. +.+...++.+++....+ +......+.+.|+.++|+.+||+ +..+++|.+||||||||
T Consensus 79 r~----~R~~IGMIFQhF---nLLssrTV~~NvA~PLe-iag~~k~ei~~RV~elLelVgL~-dk~~~yP~qLSGGQKQR 149 (339)
T COG1135 79 RQ----LRQKIGMIFQHF---NLLSSRTVFENVAFPLE-LAGVPKAEIKQRVAELLELVGLS-DKADRYPAQLSGGQKQR 149 (339)
T ss_pred HH----HHhhccEEeccc---cccccchHHhhhhhhHh-hcCCCHHHHHHHHHHHHHHcCCh-hhhccCchhcCcchhhH
Confidence 21 222333333321 22334566666654332 33344456778999999999998 56899999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG----WKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~----~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
|+|||||+.+|+|||+|||||+|||.+...+.++|++ ++.||++|||.|+.+.++|||+.+|++|++++.+.-.+.
T Consensus 150 VaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 150 VAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 9999999999999999999999999999888888865 467999999999999999999999999999998777777
Q ss_pred HHHHH
Q psy11936 377 FKKMY 381 (548)
Q Consensus 377 f~~~~ 381 (548)
|...+
T Consensus 230 F~~Pk 234 (339)
T COG1135 230 FANPK 234 (339)
T ss_pred hcCcc
Confidence 76543
No 23
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=6.8e-45 Score=399.45 Aligned_cols=310 Identities=17% Similarity=0.167 Sum_probs=221.4
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++........ ..
T Consensus 4 ~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~--~~p~~G~i~~~g~~~~~~~~~~~---~~ 78 (501)
T PRK10762 4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGI--YTRDAGSILYLGKEVTFNGPKSS---QE 78 (501)
T ss_pred eEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEECCCCCHHHH---Hh
Confidence 58999999999988899999999999999999999999999999999985 46789999998877643221110 00
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcC---CCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG---ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~---~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
....++.+.. ......++.+++..........+ ......++.++|+.+|+.. ..++++.+|||||||||+
T Consensus 79 ---~~i~~v~q~~---~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~ 151 (501)
T PRK10762 79 ---AGIGIIHQEL---NLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRF-SSDKLVGELSIGEQQMVE 151 (501)
T ss_pred ---CCEEEEEcch---hccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCC-CccCchhhCCHHHHHHHH
Confidence 0111222111 11223344444421100000001 1112356788999999974 568899999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKK 379 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~ 379 (548)
|||||+.+|+|||||||||+||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+.+..
T Consensus 152 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~-~~~~~~~~ 230 (501)
T PRK10762 152 IAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAE-REVADLTE 230 (501)
T ss_pred HHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEe-cCcCcCCH
Confidence 999999999999999999999999999999888764 57999999999999999999999999999864 33322110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceeeeecCCC
Q psy11936 380 MYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFPDP 459 (548)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f~~~ 459 (548)
. .. .+... . .. ... ..| . ++.
T Consensus 231 ~----------------~~---~~~~~--------------------------~--~~---~~~-~~~-----~--~~~- 251 (501)
T PRK10762 231 D----------------SL---IEMMV--------------------------G--RK---LED-QYP-----R--LDK- 251 (501)
T ss_pred H----------------HH---HHHhc--------------------------C--CC---ccc-ccc-----c--ccc-
Confidence 0 00 00000 0 00 000 000 0 111
Q ss_pred CCCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeecc-ce--------
Q psy11936 460 PPLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLH-NV-------- 525 (548)
Q Consensus 460 ~~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~-n~-------- 525 (548)
+.++++|++++|++ .+|+|+||.. .|+.+.|.||| |||+|+|+|.++|++|+|+... ++
T Consensus 252 -~~~~~~l~~~~l~~------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~ 324 (501)
T PRK10762 252 -APGEVRLKVDNLSG------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDG 324 (501)
T ss_pred -CCCCcEEEEeCccc------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHH
Confidence 12356899999985 3799999985 89999999996 8999999999999999986532 22
Q ss_pred ---eeeeeeccc
Q psy11936 526 ---TFAYEGMKP 534 (548)
Q Consensus 526 ---~~~y~~~~~ 534 (548)
.++|+.|+|
T Consensus 325 ~~~~i~~v~q~~ 336 (501)
T PRK10762 325 LANGIVYISEDR 336 (501)
T ss_pred HHCCCEEecCcc
Confidence 489999997
No 24
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.6e-45 Score=365.17 Aligned_cols=219 Identities=28% Similarity=0.410 Sum_probs=171.6
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++++|+|+||+|++|+++||+||||||||||||+|+|. ..|.+|.|.++++++.......+...
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~--l~p~~G~V~l~g~~i~~~~~kelAk~-- 77 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGL--LKPKSGEVLLDGKDIASLSPKELAKK-- 77 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhcc--CCCCCCEEEECCCchhhcCHHHHhhh--
Confidence 58999999999999999999999999999999999999999999999984 46889999999988765443332221
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHH-HHHHHhcC--CCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEI-YEELKAIG--ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~-~~~l~~~~--~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
.++++|.. ...+..++.+.+..- +.....++ ....++.+.++|+.+|+. .+.++++.+|||||||||.
T Consensus 78 -----ia~vpQ~~---~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~-~la~r~~~~LSGGerQrv~ 148 (258)
T COG1120 78 -----LAYVPQSP---SAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLE-HLADRPVDELSGGERQRVL 148 (258)
T ss_pred -----EEEeccCC---CCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcH-HHhcCcccccChhHHHHHH
Confidence 22233221 112233333322110 00001111 122345688899999998 4789999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|||||+++|++||||||||+||+..+..++++++++ +.|||+|+||++++.++||++++|++|+++..+.+-+.+
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 999999999999999999999999999999988776 479999999999999999999999999999886664443
No 25
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-44 Score=396.82 Aligned_cols=309 Identities=18% Similarity=0.167 Sum_probs=220.1
Q ss_pred EEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhH
Q psy11936 149 VENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADV 228 (548)
Q Consensus 149 l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~ 228 (548)
++||+++|+++++|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|.|.+.++++........ ..
T Consensus 1 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~---~~--- 72 (491)
T PRK10982 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGI--YQKDSGSILFQGKEIDFKSSKEA---LE--- 72 (491)
T ss_pred CCceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC--CCCCceEEEECCEECCCCCHHHH---Hh---
Confidence 36899999988999999999999999999999999999999999985 46789999998887643221100 00
Q ss_pred HHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhc--CCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 229 KRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI--GADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 229 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~--~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
....++++.. ......++.+++......+... .......++.++|+.+|+.. ..++++.+|||||||||+||||
T Consensus 73 ~~i~~v~q~~---~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~lA~a 148 (491)
T PRK10982 73 NGISMVHQEL---NLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI-DPRAKVATLSVSQMQMIEIAKA 148 (491)
T ss_pred CCEEEEeccc---ccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCC-CccCchhhCCHHHHHHHHHHHH
Confidence 0111111111 1112334444432110000000 00112346788999999974 5688999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHHHHHH
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQ 383 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~~~~~ 383 (548)
|+.+|+||||||||++||+.++.+|.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+-+.+..
T Consensus 149 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~-~~~~~~~~---- 223 (491)
T PRK10982 149 FSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIAT-QPLAGLTM---- 223 (491)
T ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEee-cChhhCCH----
Confidence 99999999999999999999999999988764 57999999999999999999999999999864 33222100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceeeeecCC-CCCC
Q psy11936 384 KSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFPD-PPPL 462 (548)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f~~-~~~~ 462 (548)
.... +. ... .. .. ..++. ....
T Consensus 224 ------------~~~~---~~--------------------------~~~--~~---~~-----------~~~~~~~~~~ 246 (491)
T PRK10982 224 ------------DKII---AM--------------------------MVG--RS---LT-----------QRFPDKENKP 246 (491)
T ss_pred ------------HHHH---HH--------------------------HhC--CC---cc-----------cccccccCCC
Confidence 0000 00 000 00 00 00010 0112
Q ss_pred CCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeecc-ce-----------
Q psy11936 463 QPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLH-NV----------- 525 (548)
Q Consensus 463 ~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~-n~----------- 525 (548)
++++|+++||+++| +.+|+++||+. .|+.+.|.||| |||+|+|+|.++|++|.|+.+. ++
T Consensus 247 ~~~~i~~~~l~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 323 (491)
T PRK10982 247 GEVILEVRNLTSLR---QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH 323 (491)
T ss_pred CCcEEEEeCccccc---CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHC
Confidence 45689999999985 36999999985 99999999996 8999999999999999987642 33
Q ss_pred eeeeeeccc
Q psy11936 526 TFAYEGMKP 534 (548)
Q Consensus 526 ~~~y~~~~~ 534 (548)
.++|+.|.+
T Consensus 324 ~i~~~~q~~ 332 (491)
T PRK10982 324 GFALVTEER 332 (491)
T ss_pred CCEEcCCch
Confidence 178998875
No 26
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-44 Score=395.27 Aligned_cols=312 Identities=18% Similarity=0.169 Sum_probs=221.6
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|.|.+.++++....... ...
T Consensus 4 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~I~~~g~~i~~~~~~~---~~~ 78 (501)
T PRK11288 4 YLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGN--YQPDAGSILIDGQEMRFASTTA---ALA 78 (501)
T ss_pred eEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCCEEEECCEECCCCCHHH---HHh
Confidence 58999999999988899999999999999999999999999999999985 4678899999887764221110 000
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHH-HHHh-cCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYE-ELKA-IGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~-~l~~-~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
....++.+.. ......++.+++..... .... ........++.++|+.+|+.. ..++++.+|||||||||+|
T Consensus 79 ---~~i~~v~q~~---~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~l 151 (501)
T PRK11288 79 ---AGVAIIYQEL---HLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI-DPDTPLKYLSIGQRQMVEI 151 (501)
T ss_pred ---CCEEEEEech---hccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCC-CcCCchhhCCHHHHHHHHH
Confidence 0111111111 11122344444321100 0000 011123456788999999974 4688999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKM 380 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~~ 380 (548)
||||+.+|+||||||||++||+.++.+|.++|.++ +.|||+||||++++..+||+|++|++|+++.....+....
T Consensus 152 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~-- 229 (501)
T PRK11288 152 AKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQVD-- 229 (501)
T ss_pred HHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCccccCC--
Confidence 99999999999999999999999999999998765 5799999999999999999999999999975322221100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceeeeecCCCC
Q psy11936 381 YAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFPDPP 460 (548)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f~~~~ 460 (548)
. + ...+.+ .. ...... ... .+.
T Consensus 230 -~----------~---~~~~~~-----------------------------~~--~~~~~~------------~~~-~~~ 251 (501)
T PRK11288 230 -R----------D---QLVQAM-----------------------------VG--REIGDI------------YGY-RPR 251 (501)
T ss_pred -H----------H---HHHHHh-----------------------------cC--CCcccc------------ccc-ccc
Confidence 0 0 000000 00 000000 000 011
Q ss_pred CCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce---------
Q psy11936 461 PLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV--------- 525 (548)
Q Consensus 461 ~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~--------- 525 (548)
+.++++|+++|++++ .+|+|+||.. .|+.+.|.||| |||+|+|+|.++|++|+|+. ++++
T Consensus 252 ~~~~~~l~~~~~~~~-----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~ 326 (501)
T PRK11288 252 PLGEVRLRLDGLKGP-----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAI 326 (501)
T ss_pred CCCCcEEEEeccccC-----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHH
Confidence 224568999999842 4999999985 99999999997 89999999999999999875 3333
Q ss_pred --eeeeeeccc
Q psy11936 526 --TFAYEGMKP 534 (548)
Q Consensus 526 --~~~y~~~~~ 534 (548)
.++|+.|+|
T Consensus 327 ~~~i~~~~q~~ 337 (501)
T PRK11288 327 RAGIMLCPEDR 337 (501)
T ss_pred hCCCEEcCcCH
Confidence 478999987
No 27
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.9e-44 Score=347.42 Aligned_cols=224 Identities=25% Similarity=0.274 Sum_probs=182.6
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
..|++++|+++||++.+|+||||+|++|++++|+||||||||||||+|.|+ ..|.+|.|.+++.++..........
T Consensus 7 ~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gl--l~P~~GeI~i~G~~i~~ls~~~~~~-- 82 (263)
T COG1127 7 PLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGL--LRPDKGEILIDGEDIPQLSEEELYE-- 82 (263)
T ss_pred ceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhcc--CCCCCCeEEEcCcchhccCHHHHHH--
Confidence 469999999999999999999999999999999999999999999999985 5899999999999875443222111
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
...+.++++|.. ..+.++++.+|+...+.+...+.....+..+..-|+.+||.....+.+|++|||||++|++||
T Consensus 83 --ir~r~GvlFQ~g---ALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLA 157 (263)
T COG1127 83 --IRKRMGVLFQQG---ALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALA 157 (263)
T ss_pred --HHhheeEEeecc---ccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHH
Confidence 112233333322 233456777777655444444444455667778899999998778999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~ 378 (548)
|||+.+|+||++||||+||||.+...+.++++++ +.|+|+||||+..+..+||||++|.+|+|.++ |+.++..
T Consensus 158 RAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~-Gt~~el~ 234 (263)
T COG1127 158 RAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAE-GTPEELL 234 (263)
T ss_pred HHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEe-CCHHHHH
Confidence 9999999999999999999999988887777654 67999999999999999999999999999865 7776653
No 28
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-44 Score=349.22 Aligned_cols=215 Identities=28% Similarity=0.432 Sum_probs=170.0
Q ss_pred ccEEEEeEEEEeCCce----eeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHH
Q psy11936 145 VDIKVENFSISAKGND----LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAV 220 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~----iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~ 220 (548)
++|+++||++.|+++. +|++|||+|.+||++||||+||||||||+++|+|. ..|..|+|.+.|..+........
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl--~~p~~G~I~~~G~~~~~~~~~~~ 79 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGL--EKPSSGSILLDGKPLAPKKRAKA 79 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcc--cCCCCceEEECCcccCccccchh
Confidence 4689999999998877 99999999999999999999999999999999984 57899999999976654321110
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqR 300 (548)
..+...+++|... ....+..++.+.+ .+.+...+....+.++.++|+.+|++..+++++|.+|||||+||
T Consensus 80 ------~~~~VQmVFQDp~-~SLnP~~tv~~~l---~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QR 149 (252)
T COG1124 80 ------FYRPVQMVFQDPY-SSLNPRRTVGRIL---SEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQR 149 (252)
T ss_pred ------hccceeEEecCCc-cccCcchhHHHHH---hhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHH
Confidence 0000111111110 0011122333322 22333334456677799999999999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG----WKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~----~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
|||||||+.+|++||||||||+||+..+..++++|.+ ++.|+||||||+..+..+||||++|++|++++..
T Consensus 150 iaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~ 224 (252)
T COG1124 150 IAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIG 224 (252)
T ss_pred HHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEee
Confidence 9999999999999999999999999999998888865 4679999999999999999999999999999864
No 29
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-44 Score=350.28 Aligned_cols=201 Identities=30% Similarity=0.425 Sum_probs=158.8
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
.+.+++++++|++..+|+|+||+|.+||+++||||||||||||||+|+|+ ..|.+|.|.+.++.+...... + .
T Consensus 3 ~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL--~~p~~G~V~~~g~~v~~p~~~-~----~ 75 (248)
T COG1116 3 LLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGL--EKPTSGEVLLDGRPVTGPGPD-I----G 75 (248)
T ss_pred eEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCcccCCCCCC-E----E
Confidence 58899999999999999999999999999999999999999999999985 578899999998877332211 0 1
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
..++...+++... +.+|+..... +......+..+++.++|+.+||.. ..+++|++|||||||||+|||
T Consensus 76 ~vFQ~~~LlPW~T----------v~~NV~l~l~-~~~~~~~e~~~~a~~~L~~VgL~~-~~~~~P~qLSGGMrQRVaiAR 143 (248)
T COG1116 76 YVFQEDALLPWLT----------VLDNVALGLE-LRGKSKAEARERAKELLELVGLAG-FEDKYPHQLSGGMRQRVAIAR 143 (248)
T ss_pred EEeccCcccchhh----------HHhhheehhh-ccccchHhHHHHHHHHHHHcCCcc-hhhcCccccChHHHHHHHHHH
Confidence 1222223333333 3333221110 111223445668999999999985 679999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHH----hhcCCeEEEEecCHHHHHhhcCEEEEEeCC
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYL----QGWKKTLLIVSHDQSFLDNVCNEIIHLDQQ 365 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L----~~~~~TvIiVSHD~~~l~~vadrIi~L~~G 365 (548)
||+.+|+|||||||+++||..++..+.+.| .+.+.|||+||||.+++-.++|||++|.++
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 999999999999999999998876655554 455789999999999999999999999984
No 30
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-43 Score=349.31 Aligned_cols=216 Identities=27% Similarity=0.369 Sum_probs=163.1
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.+|+++||+++|++.++|+||||+|.+|++++||||||||||||+|+|+|. ..|..|+|.+++..+.....
T Consensus 3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGl--l~p~~G~i~~~g~~~~~~~~------- 73 (254)
T COG1121 3 PMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGL--LKPSSGEIKIFGKPVRKRRK------- 73 (254)
T ss_pred cEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CcCCcceEEEcccccccccc-------
Confidence 369999999999976899999999999999999999999999999999984 46778888877765422110
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHH-HHHHHhcC--CCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEI-YEELKAIG--ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~-~~~l~~~~--~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
..+.+|++|... ....+..++.+.+..- +.....+. .....+.+.++|+.+|+. ++.++++++|||||+|||
T Consensus 74 ---~~~IgYVPQ~~~-~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~-~~~~r~i~~LSGGQ~QRV 148 (254)
T COG1121 74 ---RLRIGYVPQKSS-VDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME-DLRDRQIGELSGGQKQRV 148 (254)
T ss_pred ---CCeEEEcCcccc-cCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch-hhhCCcccccCcHHHHHH
Confidence 011222333221 1122344444433210 00000001 122357899999999998 578999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
.|||||+++|+||||||||+++|+.++..+.++|+++ ++|||+||||+..+..+||+|+.|+ ++++.+ |+.++
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~-G~~~~ 224 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIAS-GPPEE 224 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEec-cChhh
Confidence 9999999999999999999999999999999988765 5799999999999999999999995 555555 54443
No 31
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.9e-42 Score=337.16 Aligned_cols=212 Identities=24% Similarity=0.338 Sum_probs=166.0
Q ss_pred EEEEeEEEEeCCc----eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 147 IKVENFSISAKGN----DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 147 I~l~nls~~y~~~----~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
++++||++.|+.. .+|+++||+|++||+++|+|||||||||||++|.|. ..|++|.+.+.++++...+......
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~l--d~pt~G~v~i~g~d~~~l~~~~~~~ 79 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGL--DKPTSGEVLINGKDLTKLSEKELAK 79 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc--cCCCCceEEECCEEcCcCCHHHHHH
Confidence 6799999999642 689999999999999999999999999999999974 5779999999998876544322211
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
.. ....++++| ..+..+..++.+++.... .+..........++..+++.+|+.+...+++|.+||||||||||
T Consensus 80 ~R---~~~iGfvFQ---~~nLl~~ltv~ENv~lpl-~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVA 152 (226)
T COG1136 80 LR---RKKIGFVFQ---NFNLLPDLTVLENVELPL-LIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVA 152 (226)
T ss_pred HH---HHhEEEECc---cCCCCCCCCHHHHHHhHH-HHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHH
Confidence 10 111222222 234445677888765322 12222211356778899999999866555899999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLY 368 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~ 368 (548)
|||||+.+|+|||+||||.+||..+...++++|.++ +.||||||||...+. .|||++.|.+|++.
T Consensus 153 IARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~~ 221 (226)
T COG1136 153 IARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKIE 221 (226)
T ss_pred HHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCeee
Confidence 999999999999999999999999999988888765 569999999999875 79999999999954
No 32
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-42 Score=359.27 Aligned_cols=217 Identities=26% Similarity=0.313 Sum_probs=177.6
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
.|+++||+++||+..+++|+||+|.+||+++|+||||||||||||+|+|. ..|++|+|.+.++++......
T Consensus 5 ~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGf--e~p~~G~I~l~G~~i~~lpp~------- 75 (352)
T COG3842 5 ALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGF--EQPSSGEILLDGEDITDVPPE------- 75 (352)
T ss_pred eEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEECCCCChh-------
Confidence 58999999999999999999999999999999999999999999999984 689999999999988653321
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcC---CCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG---ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~---~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
.+..++++|. ...++.+++.+|+..- |.... ..+...++.++|+.+++.. +.+++|++||||||||||
T Consensus 76 --kR~ig~VFQ~---YALFPHltV~~NVafG---Lk~~~~~~~~~i~~rv~e~L~lV~L~~-~~~R~p~qLSGGQqQRVA 146 (352)
T COG3842 76 --KRPIGMVFQS---YALFPHMTVEENVAFG---LKVRKKLKKAEIKARVEEALELVGLEG-FADRKPHQLSGGQQQRVA 146 (352)
T ss_pred --hcccceeecC---cccCCCCcHHHHhhhh---hhhcCCCCHHHHHHHHHHHHHHcCchh-hhhhChhhhChHHHHHHH
Confidence 1122233222 2345577777776432 33112 1235578999999999985 789999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHH----HHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLD----NYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~----~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~ 378 (548)
|||||+.+|++||||||.|+||..-+..+. ++.++.+.|+|+||||.+++..++|||++|++|+|...+.+.+.|.
T Consensus 147 LARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~ 226 (352)
T COG3842 147 LARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYE 226 (352)
T ss_pred HHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhh
Confidence 999999999999999999999987665554 4455568899999999999999999999999999998877777775
Q ss_pred HH
Q psy11936 379 KM 380 (548)
Q Consensus 379 ~~ 380 (548)
..
T Consensus 227 ~P 228 (352)
T COG3842 227 RP 228 (352)
T ss_pred Cc
Confidence 43
No 33
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-42 Score=332.55 Aligned_cols=221 Identities=23% Similarity=0.339 Sum_probs=170.9
Q ss_pred ccEEEEeEEEEe-CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 145 VDIKVENFSISA-KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 145 ~~I~l~nls~~y-~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
++|+++||++.| +++.+|++|||+|++||+++|||+||||||||||+|+| +..|+.|+|.+.+.++.......+...
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lng--l~d~t~G~i~~~g~~i~~~~~k~lr~~ 79 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNG--LVDPTSGEILFNGVQITKLKGKELRKL 79 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhc--ccCCCcceEEecccchhccchHHHHHH
Confidence 469999999999 88999999999999999999999999999999999998 457889999999877755443322221
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHH-------HHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKE-------IYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGG 296 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~-------~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 296 (548)
....+++++.. +.....++.+++.. .+..+..+.......++.++|+++|+.+ ....+..+||||
T Consensus 80 ----r~~iGmIfQ~~---nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~-~A~qra~~LSGG 151 (258)
T COG3638 80 ----RRDIGMIFQQF---NLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILD-KAYQRASTLSGG 151 (258)
T ss_pred ----HHhceeEeccC---CcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHH-HHHHHhccCCcc
Confidence 11222222211 11222333333321 1111222222344567889999999985 567889999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
|+|||+|||||+++|+|||.|||+++|||.+...++++|++. +.|||++.|+++++.++||||+-|++|++++ .|
T Consensus 152 QQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivf-Dg 230 (258)
T COG3638 152 QQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVF-DG 230 (258)
T ss_pred hhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEE-eC
Confidence 999999999999999999999999999999999999988764 5899999999999999999999999999985 46
Q ss_pred CHHH
Q psy11936 373 NYSM 376 (548)
Q Consensus 373 ~y~~ 376 (548)
+-++
T Consensus 231 ~~~e 234 (258)
T COG3638 231 PASE 234 (258)
T ss_pred Chhh
Confidence 6544
No 34
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=6.8e-42 Score=381.08 Aligned_cols=313 Identities=19% Similarity=0.220 Sum_probs=210.6
Q ss_pred eEEEEeCCc-eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEE-----------EeceeeccCchh
Q psy11936 151 NFSISAKGN-DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL-----------YCEQEVVADDLT 218 (548)
Q Consensus 151 nls~~y~~~-~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~-----------~~~q~i~~~~~~ 218 (548)
+++++||.+ .+|++++ ++.+|+++||+||||||||||||+|+|. ..|..|+|. |.|+++..
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~--l~p~~G~i~~~~~~~~~~~~~~G~~l~~---- 150 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGE--LIPNLGDYEEEPSWDEVLKRFRGTELQN---- 150 (590)
T ss_pred CceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCC--ccCCCccccCCCcHHHHHHHhCChHHHH----
Confidence 488999874 6999999 9999999999999999999999999985 457788876 33332210
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHH
Q psy11936 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWR 298 (548)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqk 298 (548)
....+........+..+........+..++.+++ .. .....++.++|+.+||. ...++++.+|||||+
T Consensus 151 -~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l-------~~---~~~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~ 218 (590)
T PRK13409 151 -YFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELL-------KK---VDERGKLDEVVERLGLE-NILDRDISELSGGEL 218 (590)
T ss_pred -HHHHHhccCcceeecccchhhhhhhhcchHHHHH-------Hh---hhHHHHHHHHHHHcCCc-hhhcCChhhCCHHHH
Confidence 0000000000000000000000000111222222 11 12345788999999997 467999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
|||+||+||+.+|+|||||||||+||+.++.++.++|+++ +.|||+||||++++..+||+|++|+++. |.|..
T Consensus 219 qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~~-----g~~g~ 293 (590)
T PRK13409 219 QRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGEP-----GAYGV 293 (590)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCc-----cccce
Confidence 9999999999999999999999999999999999999877 7899999999999999999999997641 22222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceeeeec
Q psy11936 377 FKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSF 456 (548)
Q Consensus 377 f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f 456 (548)
+......+ ..+........ .. ....- + .....|.+
T Consensus 294 ~~~~~~~~------------~~i~~~~~~~~---------------~~----e~~~~---~-----------~~~~~~~~ 328 (590)
T PRK13409 294 VSKPKGVR------------VGINEYLKGYL---------------PE----ENMRI---R-----------PEPIEFEE 328 (590)
T ss_pred ecchhHHH------------HhHHHHHHhcc---------------hh----hhhhc---c-----------ccCcceec
Confidence 21111100 00000000000 00 00000 0 00111222
Q ss_pred CCCC--CCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeee
Q psy11936 457 PDPP--PLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAY 529 (548)
Q Consensus 457 ~~~~--~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y 529 (548)
+.+. ..+.++|+++|++++|++ ..|+++||.. .|+.+.|.||| |||+|+|+|.++|++|.|+.. +.++|
T Consensus 329 ~~~~~~~~~~~~l~~~~ls~~~~~--~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~--~~i~y 404 (590)
T PRK13409 329 RPPRDESERETLVEYPDLTKKLGD--FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE--LKISY 404 (590)
T ss_pred CCCccccCCceEEEEcceEEEECC--EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe--eeEEE
Confidence 2111 235679999999999965 3589999984 89999999996 899999999999999999875 78999
Q ss_pred eecccee
Q psy11936 530 EGMKPLL 536 (548)
Q Consensus 530 ~~~~~~~ 536 (548)
+.|++.+
T Consensus 405 ~~Q~~~~ 411 (590)
T PRK13409 405 KPQYIKP 411 (590)
T ss_pred ecccccC
Confidence 9999753
No 35
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-41 Score=338.37 Aligned_cols=220 Identities=25% Similarity=0.340 Sum_probs=165.8
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++++...+.......
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~p~~G~i~~~g~~~~~~~~~~~~~~--- 75 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGL--LRPDSGEVLIDGEDISGLSEAELYRL--- 75 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEEccccChhhHHHH---
Confidence 4689999999988899999999999999999999999999999999985 46788999998877643221000000
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
.....++++.. ......++.+++.................++.++++.+|+.. ..++++.+|||||||||+||||
T Consensus 76 -~~~i~~v~q~~---~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~ia~a 150 (235)
T cd03261 76 -RRRMGMLFQSG---ALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRG-AEDLYPAELSGGMKKRVALARA 150 (235)
T ss_pred -hcceEEEccCc---ccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHH
Confidence 01111222211 112233555554321110000111123456788999999974 5688999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++. .|+.+.+
T Consensus 151 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 224 (235)
T cd03261 151 LALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVA-EGTPEEL 224 (235)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEE-ecCHHHH
Confidence 99999999999999999999999999998764 5799999999999999999999999999975 4666554
No 36
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=2.4e-41 Score=369.24 Aligned_cols=201 Identities=34% Similarity=0.496 Sum_probs=166.8
Q ss_pred ccEEEEeEEEEeCC-ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC------CCCeEEEEeceeeccCch
Q psy11936 145 VDIKVENFSISAKG-NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV------PPNIDILYCEQEVVADDL 217 (548)
Q Consensus 145 ~~I~l~nls~~y~~-~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~------~~~g~I~~~~q~i~~~~~ 217 (548)
..++++|++++|++ +.+++++||.|.+|+++|||||||+|||||||+|+|..-+. ..+..++|++|+.....
T Consensus 320 ~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~- 398 (530)
T COG0488 320 LVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELD- 398 (530)
T ss_pred eeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcC-
Confidence 46999999999966 68999999999999999999999999999999998753221 22345666666542110
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHH
Q psy11936 218 TAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGW 297 (548)
Q Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 297 (548)
...++. +.+........+..++.+|..|+|+.....+++..|||||
T Consensus 399 ---------------------------~~~t~~-------d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGE 444 (530)
T COG0488 399 ---------------------------PDKTVL-------EELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGE 444 (530)
T ss_pred ---------------------------ccCcHH-------HHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhH
Confidence 001111 1122222222267789999999999888899999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|.||+||++++.+|+||||||||||||+.+++.|.+.|.+|.+|||+||||++|++++|++||++.+ .+..|.|+|++|
T Consensus 445 k~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y 523 (530)
T COG0488 445 KARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDY 523 (530)
T ss_pred HHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHH
Q psy11936 378 KKMY 381 (548)
Q Consensus 378 ~~~~ 381 (548)
.+..
T Consensus 524 ~~~~ 527 (530)
T COG0488 524 LEQK 527 (530)
T ss_pred HHhh
Confidence 7643
No 37
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-42 Score=345.13 Aligned_cols=221 Identities=25% Similarity=0.333 Sum_probs=173.1
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc-hhHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD-LTAVESV 223 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~-~~~~~~~ 223 (548)
|+|.++|+++.|+...+++||||.|..||.++|+||||||||||||+|+|+ ..|+.|.|.++++-+.... .....
T Consensus 1 m~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGL--e~p~~G~I~~~~~~l~D~~~~~~~~-- 76 (345)
T COG1118 1 MSIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGL--ETPDAGRIRLNGRVLFDVSNLAVRD-- 76 (345)
T ss_pred CceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCc--CCCCCceEEECCEeccchhccchhh--
Confidence 468999999999999999999999999999999999999999999999985 5899999999888432211 11111
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHH-HhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEEL-KAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l-~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
++.+++++.. ..++.+++.+++..-.... ...+......++.++|..+.|+. +.+++|.+||||||||||
T Consensus 77 -----R~VGfvFQ~Y---ALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~-la~ryP~QLSGGQrQRVA 147 (345)
T COG1118 77 -----RKVGFVFQHY---ALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEG-LADRYPAQLSGGQRQRVA 147 (345)
T ss_pred -----cceeEEEech---hhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccc-hhhcCchhcChHHHHHHH
Confidence 1222222221 2334566666553211100 11122356778999999999984 789999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHH----HHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVI----WLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~----~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~ 378 (548)
|||||+.+|++||||||+++||...+. ||.++..+++.|+|+||||.+++.++||||++|++|+|...+.+++.|.
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 999999999999999999999997654 5555556678999999999999999999999999999998877777664
No 38
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4e-42 Score=354.38 Aligned_cols=218 Identities=25% Similarity=0.368 Sum_probs=177.4
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
.|+++||+++||+..+++++||+|..||+++|+||||||||||||+|||+ ..|++|+|.+.+..+.......
T Consensus 3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGL--e~~~~G~I~i~g~~vt~l~P~~------ 74 (338)
T COG3839 3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGL--EEPTSGEILIDGRDVTDLPPEK------ 74 (338)
T ss_pred EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEECCCCChhH------
Confidence 58999999999986699999999999999999999999999999999985 5789999999999886533211
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
+...+++|. ...++.+++.+|+.... .+......+.++++.++++.|++.+ +++++|.+|||||||||||||
T Consensus 75 ---R~iamVFQ~---yALyPhmtV~~Niaf~L-k~~~~~k~ei~~rV~eva~~L~l~~-lL~r~P~~LSGGQrQRVAlaR 146 (338)
T COG3839 75 ---RGIAMVFQN---YALYPHMTVYENIAFGL-KLRGVPKAEIDKRVKEVAKLLGLEH-LLNRKPLQLSGGQRQRVALAR 146 (338)
T ss_pred ---CCEEEEeCC---ccccCCCcHHHHhhhhh-hhCCCchHHHHHHHHHHHHHcCChh-HHhcCcccCChhhHHHHHHHH
Confidence 111122221 22345677777764322 1222334567889999999999984 789999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHH----hhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYL----QGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKK 379 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L----~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~ 379 (548)
||+.+|+++|||||+|+||...+..+...| ++++.|+|+||||..++..++|||++|++|+|...+.+.+.|.+
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 999999999999999999997766555544 44678999999999999999999999999999999888777753
No 39
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-41 Score=324.85 Aligned_cols=227 Identities=22% Similarity=0.322 Sum_probs=178.2
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCC---CCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVP---PNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~---~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
.++++||++.||.+.+|+|||+.|+++.++|||||||||||||||+|....-..| -.|.|.|.|+++.......+.
T Consensus 7 ~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~- 85 (253)
T COG1117 7 AIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVE- 85 (253)
T ss_pred eeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHH-
Confidence 5889999999999999999999999999999999999999999999986532333 258999999998765322211
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh---hhhcccCCCCHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA---MQDRATKNFSGGWRM 299 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~---~~~~~~~~LSGGqkq 299 (548)
..++.+++++. ...|..+.++++..-. ++........++.++..|....|.++ .+++....|||||||
T Consensus 86 ----lRr~vGMVFQk----PnPFp~SIydNVayG~-r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQ 156 (253)
T COG1117 86 ----LRRRVGMVFQK----PNPFPMSIYDNVAYGL-RLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQ 156 (253)
T ss_pred ----HHHHheeeccC----CCCCCchHHHHHHHhH-HhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHH
Confidence 11222333322 1224466666654321 12222223456778888988888753 456778899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 300 RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 300 RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~--~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|++|||||+.+|+|||||||||+|||.+...+++++.+++ -|||||||++.-+.+++|++.++..|++++|+.+-..|
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 9999999999999999999999999999999999998874 59999999999999999999999999999998888777
Q ss_pred HHHHH
Q psy11936 378 KKMYA 382 (548)
Q Consensus 378 ~~~~~ 382 (548)
...+.
T Consensus 237 ~~P~~ 241 (253)
T COG1117 237 TNPKH 241 (253)
T ss_pred cCccH
Confidence 65443
No 40
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=3.1e-41 Score=330.82 Aligned_cols=211 Identities=23% Similarity=0.299 Sum_probs=159.9
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
+|+++||+++|++ +.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++++..........
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~~~- 77 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGI--EKPTRGKIRFNGQDLTRLRGREIPF- 77 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEehhhcChhHHHH-
Confidence 3789999999964 4699999999999999999999999999999999985 4678899999887653221111000
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
..+...++++.. ......++.+++..... ...........++.++++.+|+.. ..++++.+|||||+|||+|
T Consensus 78 ---~~~~i~~~~q~~---~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~l 149 (216)
T TIGR00960 78 ---LRRHIGMVFQDH---RLLSDRTVYDNVAFPLR-IIGVPPRDANERVSAALEKVGLEG-KAHALPMQLSGGEQQRVAI 149 (216)
T ss_pred ---HHHhceEEecCc---cccccccHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHH
Confidence 001111222111 11223355554432111 111111123467889999999974 5688999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|++
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999876 57999999999999999999999999974
No 41
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=3.3e-41 Score=352.61 Aligned_cols=220 Identities=23% Similarity=0.339 Sum_probs=169.2
Q ss_pred cEEEEeEEEEeCC----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 146 DIKVENFSISAKG----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~~----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
+|+++||+++|++ ..+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.++++.......+.
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl--~~p~~G~I~i~G~~i~~~~~~~l~ 78 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL--ERPTSGSVIVDGQDLTTLSNSELT 78 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEECCcCCHHHHH
Confidence 4889999999952 4699999999999999999999999999999999984 478899999999877543221111
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
.. .+..+++++. ...+...++.+++..... +..........++.++|+.+|+.+ ..++++.+|||||||||
T Consensus 79 ~~----r~~Ig~v~Q~---~~l~~~~tv~eni~~~~~-~~~~~~~~~~~~v~e~l~~vgL~~-~~~~~~~~LSgGqkQRV 149 (343)
T TIGR02314 79 KA----RRQIGMIFQH---FNLLSSRTVFGNVALPLE-LDNTPKDEIKRKVTELLALVGLGD-KHDSYPSNLSGGQKQRV 149 (343)
T ss_pred HH----hcCEEEEECC---ccccccCcHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHH
Confidence 10 0111122111 112223456665533211 111112234567889999999974 67999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
+|||||+.+|++|||||||++||+.+..++.++|+++ +.|||+||||++.+..+||+|++|++|+++.. |+.+++
T Consensus 150 ~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~-g~~~~v 228 (343)
T TIGR02314 150 AIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ-GTVSEI 228 (343)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-cCHHHH
Confidence 9999999999999999999999999999999988764 67999999999999999999999999999975 555443
No 42
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=5.5e-41 Score=346.62 Aligned_cols=217 Identities=24% Similarity=0.343 Sum_probs=171.6
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|++..+|+||||+|.+|+++||+||||||||||+++|+|. ..|.+|+|.+++.++..... ...
T Consensus 7 ~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl--~~p~~G~v~i~G~~~~~~~~-~~~---- 79 (306)
T PRK13537 7 PIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGL--THPDAGSISLCGEPVPSRAR-HAR---- 79 (306)
T ss_pred eEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEecccchH-HHH----
Confidence 58999999999988999999999999999999999999999999999984 46889999998887643211 111
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
...+++++. .......++.+++... ..+..........++.++++.+++.. ..++++.+|||||||||+||+
T Consensus 80 ---~~ig~v~q~---~~~~~~~tv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~ 151 (306)
T PRK13537 80 ---QRVGVVPQF---DNLDPDFTVRENLLVF-GRYFGLSAAAARALVPPLLEFAKLEN-KADAKVGELSGGMKRRLTLAR 151 (306)
T ss_pred ---hcEEEEecc---CcCCCCCcHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHcCCch-HhcCchhhCCHHHHHHHHHHH
Confidence 112222221 1122345666665422 12221122223456788999999974 578999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~ 378 (548)
||+.+|++|||||||+|||+.++.+|.++|.++ +.|||++||+++++..+||+|++|++|+++.. |+.+.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~-g~~~~l~ 226 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAE-GAPHALI 226 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE-CCHHHHH
Confidence 999999999999999999999999999999876 57999999999999999999999999999864 6666553
No 43
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=6.1e-41 Score=344.01 Aligned_cols=217 Identities=27% Similarity=0.401 Sum_probs=173.7
Q ss_pred cEEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.|+++||++.|+ ++.+|+||||+|.+|+++||+||||||||||||+|+|. ..|.+|+|.++++++... ...+..
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl--~~p~~G~i~i~G~~~~~~-~~~~~~-- 78 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGL--LKPTSGEILVLGYDVVKE-PAKVRR-- 78 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCC--cCCCceEEEEcCEeCccC-HHHHHh--
Confidence 478899999999 69999999999999999999999999999999999985 468999999999876543 111111
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
..+++++. .......++.+++.. +..+..........++.++|+.+||.. ..++++.+||+||||||+||
T Consensus 79 -----~igy~~~~---~~~~~~lT~~e~l~~-~~~l~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~lS~G~kqrl~ia 148 (293)
T COG1131 79 -----RIGYVPQE---PSLYPELTVRENLEF-FARLYGLSKEEAEERIEELLELFGLED-KANKKVRTLSGGMKQRLSIA 148 (293)
T ss_pred -----heEEEccC---CCCCccccHHHHHHH-HHHHhCCChhHHHHHHHHHHHHcCCch-hhCcchhhcCHHHHHHHHHH
Confidence 12222221 112334566666543 223332222234678999999999986 44888999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---C-CeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---K-KTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~-~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~ 378 (548)
+||+.+|+||||||||||||+.++..+.++|+.+ + .|||++||.++.+..+||+|++|++|++++++ ..+++.
T Consensus 149 ~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g-~~~~l~ 225 (293)
T COG1131 149 LALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEG-TPEELK 225 (293)
T ss_pred HHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeC-CHHHHH
Confidence 9999999999999999999999999999999876 3 59999999999999999999999999999875 655543
No 44
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.1e-41 Score=329.22 Aligned_cols=208 Identities=27% Similarity=0.339 Sum_probs=160.3
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++++..... ...
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~p~~G~i~~~g~~~~~~~~--~~~---- 72 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGL--ERPDSGEILIDGRDVTGVPP--ERR---- 72 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCeEEEECCEEcCcCch--hhc----
Confidence 4689999999988899999999999999999999999999999999985 46788999998876532110 000
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
...++++.. ......++.+++..... ...........++.++++.+|+.. ..++++.+|||||||||+||||
T Consensus 73 ---~i~~v~q~~---~~~~~~tv~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrl~la~a 144 (213)
T cd03259 73 ---NIGMVFQDY---ALFPHLTVAENIAFGLK-LRGVPKAEIRARVRELLELVGLEG-LLNRYPHELSGGQQQRVALARA 144 (213)
T ss_pred ---cEEEEcCch---hhccCCcHHHHHHhHHH-HcCCCHHHHHHHHHHHHHHcCChh-hhhcChhhCCHHHHHHHHHHHH
Confidence 111111111 11122344444422111 100111122456788999999974 5688999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++..
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~ 212 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQV 212 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEec
Confidence 99999999999999999999999999999764 57999999999999999999999999998753
No 45
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-41 Score=335.58 Aligned_cols=219 Identities=28% Similarity=0.425 Sum_probs=171.0
Q ss_pred ccEEEEeEEEEeCCc-eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeecc-CchhHHHH
Q psy11936 145 VDIKVENFSISAKGN-DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVA-DDLTAVES 222 (548)
Q Consensus 145 ~~I~l~nls~~y~~~-~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~-~~~~~~~~ 222 (548)
+++.++|++++|++. .+|+++||+|.+|++++|+|+||||||||+++|+|. ..|.+|.|.+.+..+.. .+...+.
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GL--l~p~~G~v~~~g~~~~~~~~~~~~~- 78 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGL--LKPTSGEVLVDGLDTSSEKSLLELR- 78 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCc--CcCCCCEEEECCeeccchhhHHHhh-
Confidence 368899999999775 899999999999999999999999999999999985 47888999777765432 1111111
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCC--ChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD--SAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~--~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqR 300 (548)
+..+++.|.+ ....+..++.+.+ ...+.+.+.. +.+.++.++|..+|+.. ..++++.+|||||+||
T Consensus 79 ------~~vG~VfQnp--d~q~~~~tV~~ev---afg~~n~g~~~~e~~~rv~~~l~~vgl~~-~~~r~p~~LSGGqkqR 146 (235)
T COG1122 79 ------QKVGLVFQNP--DDQLFGPTVEDEV---AFGLENLGLPREEIEERVAEALELVGLEE-LLDRPPFNLSGGQKQR 146 (235)
T ss_pred ------cceEEEEECc--ccccccCcHHHHH---hhchhhcCCCHHHHHHHHHHHHHHcCchh-hccCCccccCCcceee
Confidence 1112222211 1122334444332 2233334332 36688999999999985 5899999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
|+||.+|+++|++|||||||++||+.++.++.+++.++ +.|||+||||++++..+||++++|++|+++..+.+++.
T Consensus 147 vaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i 226 (235)
T COG1122 147 VAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEI 226 (235)
T ss_pred HHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHH
Confidence 99999999999999999999999999999999999876 36999999999999999999999999999876545555
Q ss_pred HH
Q psy11936 377 FK 378 (548)
Q Consensus 377 f~ 378 (548)
|.
T Consensus 227 ~~ 228 (235)
T COG1122 227 FN 228 (235)
T ss_pred hh
Confidence 43
No 46
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.4e-41 Score=318.60 Aligned_cols=212 Identities=23% Similarity=0.320 Sum_probs=169.5
Q ss_pred cEEEEeEEEEeCC-ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc---hhHHH
Q psy11936 146 DIKVENFSISAKG-NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD---LTAVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~~-~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~---~~~~~ 221 (548)
+|+++||++.|++ .++|+||||+|.+||++-|+||||||||||||+|++. ..|+.|.|.++++++.... ...++
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~--e~pt~G~i~~~~~dl~~l~~~~iP~LR 78 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGE--ERPTRGKILVNGHDLSRLKGREIPFLR 78 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhh--hcCCCceEEECCeecccccccccchhh
Confidence 4889999999954 5599999999999999999999999999999999974 5799999999999886432 22222
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
..++..++...+ ..+.++.+++..... ........+..++.++|+.+||.+ ..+..|.+|||||||||
T Consensus 79 R~IGvVFQD~rL----------L~~~tvyeNVA~pL~-v~G~~~~~i~~rV~~~L~~VgL~~-k~~~lP~~LSGGEQQRv 146 (223)
T COG2884 79 RQIGVVFQDFRL----------LPDRTVYENVALPLR-VIGKPPREIRRRVSEVLDLVGLKH-KARALPSQLSGGEQQRV 146 (223)
T ss_pred heeeeEeeeccc----------cccchHhhhhhhhhh-ccCCCHHHHHHHHHHHHHHhccch-hhhcCccccCchHHHHH
Confidence 222222222111 234455555543221 122334456789999999999985 46788999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
+||||++.+|++||.||||.+|||.....+++++.++ +.||||.|||.+.++.+--|++.|++|+++.+.
T Consensus 147 aIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 147 AIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 9999999999999999999999999988888877665 679999999999999999999999999999764
No 47
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-40 Score=329.84 Aligned_cols=215 Identities=24% Similarity=0.377 Sum_probs=165.2
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
+.|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++++...........
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~~~~~~~~~~- 78 (241)
T PRK14250 2 NEIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRL--IDPTEGSILIDGVDIKTIDVIDLRRK- 78 (241)
T ss_pred ceEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEEhhhcChHHhhhc-
Confidence 358999999999888899999999999999999999999999999999985 46789999998877632211111110
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
..++++... .+..++.+++... . ... .....++.++++.+|+.....++++.+|||||+|||+||
T Consensus 79 ------i~~~~q~~~----~~~~tv~e~l~~~---~-~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la 143 (241)
T PRK14250 79 ------IGMVFQQPH----LFEGTVKDNIEYG---P-MLK-GEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIA 143 (241)
T ss_pred ------EEEEecCch----hchhhHHHHHhcc---h-hhc-CcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHH
Confidence 111111110 1112333332110 0 011 122456788999999974567889999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|||+.+|++|||||||++||+.++.++.++|..+ +.|||+||||++++..+||+|++|++|+++..+...+.|
T Consensus 144 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 144 RTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 9999999999999999999999999999988764 679999999999999999999999999999775555443
No 48
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-40 Score=326.95 Aligned_cols=212 Identities=25% Similarity=0.386 Sum_probs=162.8
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++|++++|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+..+... .....
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~-~~~~~----- 72 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTL--LKPTSGRATVAGHDVVRE-PREVR----- 72 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEecCcC-hHHHh-----
Confidence 4689999999988999999999999999999999999999999999985 467889999888765321 11110
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
....++++.. ......++.+++.... .+..........++.++++.+|+.. ..++++.+|||||||||+||||
T Consensus 73 --~~i~~~~q~~---~~~~~~tv~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr~~la~a 145 (220)
T cd03265 73 --RRIGIVFQDL---SVDDELTGWENLYIHA-RLYGVPGAERRERIDELLDFVGLLE-AADRLVKTYSGGMRRRLEIARS 145 (220)
T ss_pred --hcEEEecCCc---cccccCcHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCHH-HhhCChhhCCHHHHHHHHHHHH
Confidence 1111122111 1112234444443211 1111111223457889999999974 5789999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
|+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~-~~~ 216 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAE-GTP 216 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEe-CCh
Confidence 99999999999999999999999999988764 57999999999999999999999999999865 443
No 49
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=2e-40 Score=342.05 Aligned_cols=217 Identities=25% Similarity=0.319 Sum_probs=167.5
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
++|+++||+++|++..+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++.... ....
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~-~~~~--- 76 (303)
T TIGR01288 3 VAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGM--ISPDRGKITVLGEPVPSRA-RLAR--- 76 (303)
T ss_pred cEEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEECcccH-HHHh---
Confidence 368999999999988899999999999999999999999999999999985 4678999999887653211 1000
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
...+++++.. ......++.+++... ..+..........++.++++.+|+.. ..++++.+|||||||||+||
T Consensus 77 ----~~i~~v~q~~---~~~~~~tv~e~l~~~-~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~~LSgG~~qrv~la 147 (303)
T TIGR01288 77 ----VAIGVVPQFD---NLDPEFTVRENLLVF-GRYFGMSTREIEAVIPSLLEFARLES-KADVRVALLSGGMKRRLTLA 147 (303)
T ss_pred ----hcEEEEeccc---cCCcCCcHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHCCChh-HhcCchhhCCHHHHHHHHHH
Confidence 1111222211 112234555554321 11111111122346778999999974 56889999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+++
T Consensus 148 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~-g~~~~~ 222 (303)
T TIGR01288 148 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAE-GRPHAL 222 (303)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE-cCHHHH
Confidence 9999999999999999999999999999999876 57999999999999999999999999999864 665544
No 50
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2.2e-40 Score=346.46 Aligned_cols=217 Identities=26% Similarity=0.357 Sum_probs=169.6
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.+|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.++|.++.... ....
T Consensus 40 ~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl--~~p~~G~i~i~G~~~~~~~-~~~~--- 113 (340)
T PRK13536 40 VAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGM--TSPDAGKITVLGVPVPARA-RLAR--- 113 (340)
T ss_pred eeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC--CCCCceEEEECCEECCcch-HHHh---
Confidence 469999999999999999999999999999999999999999999999985 4688999999998764221 1110
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
...+++++. .......++.+++... ..+..........++.++++.+|+.. ..++++.+|||||||||+||
T Consensus 114 ----~~ig~v~q~---~~~~~~~tv~e~l~~~-~~~~~~~~~~~~~~~~~ll~~~~L~~-~~~~~~~~LS~G~kqrv~lA 184 (340)
T PRK13536 114 ----ARIGVVPQF---DNLDLEFTVRENLLVF-GRYFGMSTREIEAVIPSLLEFARLES-KADARVSDLSGGMKRRLTLA 184 (340)
T ss_pred ----ccEEEEeCC---ccCCCCCcHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHcCCch-hhCCChhhCCHHHHHHHHHH
Confidence 111122211 1112234555554321 11111111123456778999999984 57899999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
+||+.+|+||||||||++||+.++.+|.++|.++ +.|||++||+++++..+||+|++|++|+++.. |+.+.+
T Consensus 185 ~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~-g~~~~l 259 (340)
T PRK13536 185 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAE-GRPHAL 259 (340)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE-cCHHHH
Confidence 9999999999999999999999999999999875 57999999999999999999999999999865 665554
No 51
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.1e-41 Score=315.98 Aligned_cols=215 Identities=24% Similarity=0.385 Sum_probs=176.1
Q ss_pred cEEEEeEEEEeCCce-eeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAKGND-LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~~~-iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
+|++.+++++|+..+ +++||||++..|+++||+|+|||||||+||+|+++ ..|++|.|.+++-+........ .
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatl--L~P~~G~v~idg~d~~~~p~~v-r--- 74 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATL--LIPDSGKVTIDGVDTVRDPSFV-R--- 74 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHh--ccCCCceEEEeecccccChHHH-h---
Confidence 488999999999876 89999999999999999999999999999999974 5799999999887765433221 1
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
+..++++.. ......++..+++.. +..+..++..+.+.++.++.+.|++. +..++++..||-||||||+||
T Consensus 75 ----r~IGVl~~e---~glY~RlT~rEnl~~-Fa~L~~l~~~~~kari~~l~k~l~l~-~~~~rRv~~~S~G~kqkV~iA 145 (245)
T COG4555 75 ----RKIGVLFGE---RGLYARLTARENLKY-FARLNGLSRKEIKARIAELSKRLQLL-EYLDRRVGEFSTGMKQKVAIA 145 (245)
T ss_pred ----hhcceecCC---cChhhhhhHHHHHHH-HHHHhhhhhhHHHHHHHHHHHHhChH-HHHHHHHhhhchhhHHHHHHH
Confidence 111222110 111224556666643 44566666777889999999999997 468999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
|||+++|++|+|||||||||..+...+.+++.+. +.+||+.||++.++..+||+|++|++|.+++ .|+.+.
T Consensus 146 RAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~-~gs~~~ 219 (245)
T COG4555 146 RALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVL-EGSIEA 219 (245)
T ss_pred HHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEE-cCCHHH
Confidence 9999999999999999999999999999988765 5799999999999999999999999999985 566544
No 52
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=3.9e-40 Score=339.56 Aligned_cols=217 Identities=24% Similarity=0.418 Sum_probs=171.2
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
.|+++|++++|++..+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++.... ..+.
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl--~~~~~G~i~i~g~~~~~~~-~~~~---- 74 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGY--LPPDSGSVQVCGEDVLQNP-KEVQ---- 74 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEEcccCh-HHHH----
Confidence 58899999999988999999999999999999999999999999999985 4688999999887664311 1111
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
...+++++. .......++.+++... ..+..........++.++++.+|+.. ..++++..|||||+|||+|||
T Consensus 75 ---~~ig~~~q~---~~l~~~~tv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~la~ 146 (301)
T TIGR03522 75 ---RNIGYLPEH---NPLYLDMYVREYLQFI-AGIYGMKGQLLKQRVEEMIELVGLRP-EQHKKIGQLSKGYRQRVGLAQ 146 (301)
T ss_pred ---hceEEecCC---CCCCCCCcHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHCCCch-HhcCchhhCCHHHHHHHHHHH
Confidence 111222221 1122234555554321 11111111223467889999999985 568999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~ 378 (548)
||+.+|++|||||||+|||+.++.++.++|..+ +.|||++||+++++..+||+|++|++|+++. .|+.+.+.
T Consensus 147 al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 220 (301)
T TIGR03522 147 ALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVA-DKKLDELS 220 (301)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 999999999999999999999999999999887 4799999999999999999999999999985 58877653
No 53
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=2.1e-40 Score=323.97 Aligned_cols=208 Identities=26% Similarity=0.345 Sum_probs=161.4
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++||+++|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+.++...... .
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~v~~~g~~~~~~~~~--~----- 71 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL--EEPTSGRIYIGGRDVTDLPPK--D----- 71 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEECCcCCcc--c-----
Confidence 4689999999988999999999999999999999999999999999985 467889999988776321110 0
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
....++++.. ......++.+++.... .+..........++.++++.+|+. ...++++.+|||||+|||+||||
T Consensus 72 --~~i~~~~q~~---~~~~~~tv~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qr~~lara 144 (213)
T cd03301 72 --RDIAMVFQNY---ALYPHMTVYDNIAFGL-KLRKVPKDEIDERVREVAELLQIE-HLLDRKPKQLSGGQRQRVALGRA 144 (213)
T ss_pred --ceEEEEecCh---hhccCCCHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCH-HHHhCChhhCCHHHHHHHHHHHH
Confidence 0111111111 1112234444442211 111111122345678899999997 45789999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.+
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~ 212 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQI 212 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEec
Confidence 99999999999999999999999999998764 57999999999999999999999999999865
No 54
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=2.9e-40 Score=326.29 Aligned_cols=211 Identities=24% Similarity=0.351 Sum_probs=159.3
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCC---CCCCeEEEEeceeeccCchhHHHHH
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK---VPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~---~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
|+++||+++|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|.... .|.+|+|.+.+.++...+.. ....
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~-~~~~ 79 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVD-VLEL 79 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchH-HHHH
Confidence 4689999999988999999999999999999999999999999999985210 57789999988765322100 0000
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCC---hHHHHHHHHHhCCCChhhhhcc--cCCCCHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADS---AEPRARRILAGLGFSRAMQDRA--TKNFSGGWR 298 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~---~~~~~~~~L~~lgl~~~~~~~~--~~~LSGGqk 298 (548)
.....++++... .+..++.+++.... ...+... ...++.++++.+|+.. ..++. +.+|||||+
T Consensus 80 ----~~~i~~~~q~~~----~~~~tv~e~l~~~~---~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LSgG~~ 147 (227)
T cd03260 80 ----RRRVGMVFQKPN----PFPGSIYDNVAYGL---RLHGIKLKEELDERVEEALRKAALWD-EVKDRLHALGLSGGQQ 147 (227)
T ss_pred ----HhhEEEEecCch----hccccHHHHHHhHH---HhcCCCcHHHHHHHHHHHHHHcCCCh-HHhccCCcccCCHHHH
Confidence 001111111111 11334444442211 1111111 3456788999999975 34555 599999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~--~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|||+|||||+.+|++|||||||++||+.++.++.++|.++. .|||+||||++++..+||+|++|++|+++.+
T Consensus 148 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 221 (227)
T cd03260 148 QRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEF 221 (227)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEe
Confidence 99999999999999999999999999999999999998763 6999999999999999999999999999865
No 55
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-40 Score=340.09 Aligned_cols=225 Identities=24% Similarity=0.355 Sum_probs=165.5
Q ss_pred cEEEEeEEEEeCCc-----eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc----
Q psy11936 146 DIKVENFSISAKGN-----DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD---- 216 (548)
Q Consensus 146 ~I~l~nls~~y~~~-----~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~---- 216 (548)
.|+++||+++|++. .+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+..+....
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl--~~p~~G~i~~~g~~~~~~~~~~~ 79 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNAL--LLPDTGTIEWIFKDEKNKKKTKE 79 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC--CCCCCcEEEEeceeccccccccc
Confidence 48999999999753 599999999999999999999999999999999985 4678899988765432100
Q ss_pred ---------hhHH---H-HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC--CChHHHHHHHHHhCCC
Q psy11936 217 ---------LTAV---E-SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA--DSAEPRARRILAGLGF 281 (548)
Q Consensus 217 ---------~~~~---~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~--~~~~~~~~~~L~~lgl 281 (548)
.... . ..........+++++.. ....+..++.+++.. .....+. .....++.++|+.+||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~--~~~l~~~tv~e~i~~---~~~~~~~~~~~~~~~~~~~l~~~gL 154 (305)
T PRK13651 80 KEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFA--EYQLFEQTIEKDIIF---GPVSMGVSKEEAKKRAAKYIELVGL 154 (305)
T ss_pred ccccccccccccccccccchHHHHHhceEEEeeCc--ccccccccHHHHHHh---hHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 0000 0 00000001112222211 011223344444421 1111121 2345678899999999
Q ss_pred ChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCE
Q psy11936 282 SRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNE 358 (548)
Q Consensus 282 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadr 358 (548)
.....++++.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+|||
T Consensus 155 ~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adr 234 (305)
T PRK13651 155 DESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKR 234 (305)
T ss_pred ChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCE
Confidence 755679999999999999999999999999999999999999999999999988764 67999999999999999999
Q ss_pred EEEEeCCEEEEEcCCHHHH
Q psy11936 359 IIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 359 Ii~L~~G~i~~~~g~y~~f 377 (548)
|++|++|+++..+.+++.|
T Consensus 235 v~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 235 TIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred EEEEECCEEEEECCHHHHh
Confidence 9999999998765444434
No 56
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-40 Score=347.81 Aligned_cols=213 Identities=26% Similarity=0.352 Sum_probs=169.9
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|++..+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++...... .
T Consensus 6 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl--~~p~~G~I~~~g~~i~~~~~~--~---- 77 (351)
T PRK11432 6 FVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGL--EKPTEGQIFIDGEDVTHRSIQ--Q---- 77 (351)
T ss_pred EEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCC--CCCCceEEEECCEECCCCCHH--H----
Confidence 69999999999988899999999999999999999999999999999985 478899999999877432210 0
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
+...++++. ...++..++.+++..... +..........++.++++.+|+.. +.++++.+|||||+|||+|||
T Consensus 78 ---r~ig~vfQ~---~~lfp~~tv~eNi~~~l~-~~~~~~~~~~~~v~~~l~~~gl~~-~~~r~~~~LSgGq~QRVaLAR 149 (351)
T PRK11432 78 ---RDICMVFQS---YALFPHMSLGENVGYGLK-MLGVPKEERKQRVKEALELVDLAG-FEDRYVDQISGGQQQRVALAR 149 (351)
T ss_pred ---CCEEEEeCC---cccCCCCCHHHHHHHHHh-HcCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHH
Confidence 111222221 112334566666543211 111122234568889999999974 679999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~ 375 (548)
||+.+|+||||||||++||+.++.++.+.|+++ +.|+|+||||++++..+||+|++|++|+++..+ +.+
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g-~~~ 222 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIG-SPQ 222 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEc-CHH
Confidence 999999999999999999999999988888654 689999999999999999999999999999864 443
No 57
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.5e-40 Score=327.45 Aligned_cols=220 Identities=23% Similarity=0.297 Sum_probs=164.8
Q ss_pred EEEEeEEEEeCC-ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 147 IKVENFSISAKG-NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 147 I~l~nls~~y~~-~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
|+++||+++|++ +.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++...........
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~~~~-- 76 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGL--VEPTSGSVLIDGTDINKLKGKALRQL-- 76 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--cCCCCceEEECCEeccccCHhHHHHH--
Confidence 468999999987 7899999999999999999999999999999999985 36788999998876643221000000
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHH-------HHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYE-------ELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWR 298 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~-------~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqk 298 (548)
.....++++.. ..++..++.+++..... .+..........++.++++.+|+. ...++++.+||||||
T Consensus 77 --~~~i~~~~q~~---~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~ 150 (241)
T cd03256 77 --RRQIGMIFQQF---NLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL-DKAYQRADQLSGGQQ 150 (241)
T ss_pred --HhccEEEcccC---cccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCCh-hhhCCCcccCCHHHH
Confidence 01111222111 11122344444421110 000001122345678899999997 457889999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
|||+|||||+.+|+||||||||++||+.++.+|.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.
T Consensus 151 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~-~~~ 229 (241)
T cd03256 151 QRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFD-GPP 229 (241)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee-cCH
Confidence 9999999999999999999999999999999999988764 57999999999999999999999999999864 666
Q ss_pred HHH
Q psy11936 375 SMF 377 (548)
Q Consensus 375 ~~f 377 (548)
+++
T Consensus 230 ~~~ 232 (241)
T cd03256 230 AEL 232 (241)
T ss_pred HHh
Confidence 654
No 58
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=2.3e-40 Score=348.02 Aligned_cols=216 Identities=23% Similarity=0.288 Sum_probs=171.6
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|++..+|+|+||+|.+|++++|+|||||||||||++|+|. ..|.+|+|.+.++.+..... ..
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl--~~p~~G~I~i~g~~~~~~~~--~~---- 75 (353)
T TIGR03265 4 YLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL--ERQTAGTIYQGGRDITRLPP--QK---- 75 (353)
T ss_pred EEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCC--CCCCceEEEECCEECCCCCH--HH----
Confidence 58999999999988899999999999999999999999999999999985 47889999999887643211 00
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
+...++++. ...++..++.+++..... ...........++.++++.+||.. +.++++.+|||||||||+|||
T Consensus 76 ---r~ig~v~Q~---~~lfp~~tv~eNi~~~~~-~~~~~~~~~~~~~~~~l~~l~L~~-~~~~~~~~LSgGq~QRvaLAR 147 (353)
T TIGR03265 76 ---RDYGIVFQS---YALFPNLTVADNIAYGLK-NRGMGRAEVAERVAELLDLVGLPG-SERKYPGQLSGGQQQRVALAR 147 (353)
T ss_pred ---CCEEEEeCC---cccCCCCcHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCCc-hhhCChhhCCHHHHHHHHHHH
Confidence 111222221 122334567666643211 111112234567899999999984 679999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
||+.+|++|||||||++||+.++.++.+.|+++ +.|+|+||||++++..+||+|++|++|+++.++.+.+.|
T Consensus 148 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~ 223 (353)
T TIGR03265 148 ALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIY 223 (353)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999988888654 689999999999999999999999999999875544444
No 59
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=4.7e-40 Score=327.62 Aligned_cols=221 Identities=25% Similarity=0.332 Sum_probs=167.7
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++|++++|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+.++....... ..
T Consensus 1 ~l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~-~~--- 74 (240)
T PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKL--EEITSGDLIVDGLKVNDPKVDE-RL--- 74 (240)
T ss_pred CEEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEECCcCChhH-HH---
Confidence 37899999999988899999999999999999999999999999999985 4678999999887664211100 00
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
......++.+.. ...+..++.+++.................++.++++.+|+.. ..++++.+|||||+|||+|||
T Consensus 75 -~~~~i~~~~q~~---~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~la~ 149 (240)
T PRK09493 75 -IRQEAGMVFQQF---YLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAE-RAHHYPSELSGGQQQRVAIAR 149 (240)
T ss_pred -HhhceEEEeccc---ccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChH-HHhcChhhcCHHHHHHHHHHH
Confidence 001111222111 112234555544321111111111223456788999999974 568999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~ 378 (548)
||+.+|+||||||||++||+.++.++.++|..+ +.|||+||||++++..+||+|++|++|+++. .|+++++.
T Consensus 150 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 224 (240)
T PRK09493 150 ALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAE-DGDPQVLI 224 (240)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe-eCCHHHHh
Confidence 999999999999999999999999999998765 5799999999999999999999999999985 47776653
No 60
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=2.2e-40 Score=325.03 Aligned_cols=210 Identities=23% Similarity=0.346 Sum_probs=157.3
Q ss_pred EEEEeEEEEeCC----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 147 IKVENFSISAKG----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 147 I~l~nls~~y~~----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
|+++||+++|++ +.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++..........
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl--~~~~~G~i~~~g~~~~~~~~~~~~~ 78 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGL--DRPTSGEVRVDGTDISKLSEKELAA 78 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCC--cCCCceeEEECCEehhhcchhHHHH
Confidence 468999999986 6899999999999999999999999999999999985 4678899999887653221111000
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
.. .....++.+.. ..+...++.+++.... .+..........++.++++.+|+.. ..++++.+|||||+|||+
T Consensus 79 ~~---~~~i~~~~q~~---~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~ 150 (218)
T cd03255 79 FR---RRHIGFVFQSF---NLLPDLTALENVELPL-LLAGVPKKERRERAEELLERVGLGD-RLNHYPSELSGGQQQRVA 150 (218)
T ss_pred HH---hhcEEEEeecc---ccCCCCcHHHHHHHHH-hhcCCCHHHHHHHHHHHHHHcCCch-hhhcChhhcCHHHHHHHH
Confidence 00 00111111111 1122335555443211 1111111123456788999999974 568899999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++. +||+|++|++|++
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 151 IARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 999999999999999999999999999999998765 579999999999997 9999999999974
No 61
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=4.9e-40 Score=333.50 Aligned_cols=221 Identities=24% Similarity=0.310 Sum_probs=166.7
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+|+||+|.+|++++|+|||||||||||++|+|. ..|.+|+|.+.++.+...........
T Consensus 7 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~~~~~~~~~~-- 82 (269)
T PRK11831 7 LVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQ--IAPDHGEILFDGENIPAMSRSRLYTV-- 82 (269)
T ss_pred eEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEEccccChhhHHHH--
Confidence 58999999999988999999999999999999999999999999999985 46788999998876643221111000
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
.....++++.. ......++.+++.................++.++|+.+|+.. ..++++.+|||||||||+|||
T Consensus 83 --~~~i~~v~q~~---~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGq~qrv~lar 156 (269)
T PRK11831 83 --RKRMSMLFQSG---ALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRG-AAKLMPSELSGGMARRAALAR 156 (269)
T ss_pred --hhcEEEEeccc---ccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHH
Confidence 00111122111 112233555554321111000111112346778899999974 578899999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
||+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+++
T Consensus 157 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~-g~~~~~ 231 (269)
T PRK11831 157 AIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAH-GSAQAL 231 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEe-CCHHHH
Confidence 999999999999999999999999999988765 57999999999999999999999999999864 665554
No 62
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=2.2e-40 Score=324.96 Aligned_cols=210 Identities=26% Similarity=0.395 Sum_probs=162.8
Q ss_pred cEEEEeEEEEeCCc----eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 146 DIKVENFSISAKGN----DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~~~----~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
+|+++||+++|++. ++|+++||+|.+|++++|+|+|||||||||++|+|. ..|.+|+|.+.++++.. ....+.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~-~~~~~~ 77 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL--LEPDAGFATVDGFDVVK-EPAEAR 77 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--cCCCCceEEECCEEccc-CHHHHH
Confidence 37899999999876 799999999999999999999999999999999984 46788999998876642 111110
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
....++++.. ..+...++.+++.... .+..........++.++++.+|+. ...++++.+|||||+|||
T Consensus 78 -------~~i~~~~q~~---~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv 145 (218)
T cd03266 78 -------RRLGFVSDST---GLYDRLTARENLEYFA-GLYGLKGDELTARLEELADRLGME-ELLDRRVGGFSTGMRQKV 145 (218)
T ss_pred -------hhEEEecCCc---ccCcCCCHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCH-HHHhhhhhhcCHHHHHHH
Confidence 1111122111 1112235555543211 111111122345778899999997 467899999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
+|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||++++|++|+++..
T Consensus 146 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~ 217 (218)
T cd03266 146 AIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYE 217 (218)
T ss_pred HHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeec
Confidence 9999999999999999999999999999999999875 57999999999999999999999999999753
No 63
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-39 Score=366.90 Aligned_cols=206 Identities=28% Similarity=0.441 Sum_probs=165.4
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEece-eeccCchhHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQ-EVVADDLTAVESV 223 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q-~i~~~~~~~~~~~ 223 (548)
.+|+++||++.|+++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|.|.+.+. .+........
T Consensus 311 ~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~--~~p~~G~i~~~~~~~igy~~Q~~~--- 385 (638)
T PRK10636 311 PLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGE--LAPVSGEIGLAKGIKLGYFAQHQL--- 385 (638)
T ss_pred ceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCeEEECCCEEEEEecCcch---
Confidence 369999999999998999999999999999999999999999999999985 3577788776421 1110000000
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
.......++.+.+ ..........++..+|..|+|.....++++.+|||||||||+|
T Consensus 386 -----------------~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~L 441 (638)
T PRK10636 386 -----------------EFLRADESPLQHL-------ARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVL 441 (638)
T ss_pred -----------------hhCCccchHHHHH-------HHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHH
Confidence 0000011111111 1111122345788999999997556789999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKK 379 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~ 379 (548)
|++|+.+|+||||||||||||+.++.+|.++|..+++|||+||||++++..+||+|++|++|+++.|.|+|++|.+
T Consensus 442 a~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 442 ALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 9999999999999999999999999999999999989999999999999999999999999999989999999954
No 64
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-40 Score=347.71 Aligned_cols=214 Identities=24% Similarity=0.303 Sum_probs=169.3
Q ss_pred cEEEEeEEEEe-CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISA-KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y-~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
+|+++||+++| ++..+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++++..... ..
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl--~~p~~G~I~~~g~~i~~~~~--~~--- 75 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGL--ERITSGEIWIGGRVVNELEP--AD--- 75 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCC--CCCCceEEEECCEECCCCCH--HH---
Confidence 58999999999 788899999999999999999999999999999999985 46889999999987743211 10
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
+...++++. ...++..++.+++..... ...........++.++|+.+|+. ...++++.+|||||||||+||
T Consensus 76 ----r~ig~v~Q~---~~lfp~~tv~eNi~~~~~-~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~QRvalA 146 (356)
T PRK11650 76 ----RDIAMVFQN---YALYPHMSVRENMAYGLK-IRGMPKAEIEERVAEAARILELE-PLLDRKPRELSGGQRQRVAMG 146 (356)
T ss_pred ----CCEEEEeCC---ccccCCCCHHHHHHhHHh-hcCCCHHHHHHHHHHHHHHcCCh-hHhhCChhhCCHHHHHHHHHH
Confidence 111222221 112234566666643211 11111123346788999999997 478999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
|||+.+|+||||||||++||+.++..+.+.|+++ +.|+|+||||+.++..+||+|++|++|+++.+ |+.++
T Consensus 147 RAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~-g~~~~ 221 (356)
T PRK11650 147 RAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQI-GTPVE 221 (356)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEE-CCHHH
Confidence 9999999999999999999999999888877653 67999999999999999999999999999976 44443
No 65
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=4.4e-40 Score=321.96 Aligned_cols=210 Identities=26% Similarity=0.333 Sum_probs=158.7
Q ss_pred cEEEEeEEEEe-CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISA-KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y-~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
+|+++|++++| +++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++...........
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl--~~~~~G~i~~~g~~~~~~~~~~~~~~- 77 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGA--LTPSRGQVRIAGEDVNRLRGRQLPLL- 77 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEEcccCCHHHHHHH-
Confidence 37899999999 567899999999999999999999999999999999985 45789999998877643221110000
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
.....++.+.. ......++.+++.... .+..........++.++++.+|+.. ..++.+.+|||||+|||+||
T Consensus 78 ---~~~i~~~~q~~---~~~~~~tv~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la 149 (214)
T TIGR02673 78 ---RRRIGVVFQDF---RLLPDRTVYENVALPL-EVRGKKEREIQRRVGAALRQVGLEH-KADAFPEQLSGGEQQRVAIA 149 (214)
T ss_pred ---HhheEEEecCh---hhccCCcHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHH
Confidence 00111111111 1112234444443211 1111111123457788999999974 56889999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCE
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQK 366 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~ 366 (548)
|||+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|+
T Consensus 150 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 150 RAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 9999999999999999999999999999999865 5799999999999999999999999884
No 66
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-40 Score=322.66 Aligned_cols=208 Identities=28% Similarity=0.429 Sum_probs=161.0
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++||++.|+++.+|+|+||+|.+| ++||+|||||||||||++|+|. ..|.+|+|.+.+.++.... ..+.
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~-~~~~----- 71 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATL--TPPSSGTIRIDGQDVLKQP-QKLR----- 71 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCC--CCCCccEEEECCCccccch-HHHH-----
Confidence 46899999998888999999999999 9999999999999999999985 4678999999887653211 1110
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
....++++.. ..+...++.+++.... .+..........++.++++.+|+.. ..++++.+|||||+|||+||||
T Consensus 72 --~~i~~~~q~~---~~~~~~tv~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~a 144 (211)
T cd03264 72 --RRIGYLPQEF---GVYPNFTVREFLDYIA-WLKGIPSKEVKARVDEVLELVNLGD-RAKKKIGSLSGGMRRRVGIAQA 144 (211)
T ss_pred --hheEEecCCC---cccccCCHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHCCCHH-HHhCchhhCCHHHHHHHHHHHH
Confidence 1111122111 1112234555443211 1111111223456788999999974 5688999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||++++|++|+++..
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~ 210 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFE 210 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEec
Confidence 99999999999999999999999999999876 47999999999999999999999999999753
No 67
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4.4e-40 Score=321.33 Aligned_cols=205 Identities=29% Similarity=0.415 Sum_probs=156.3
Q ss_pred EEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 149 VENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 149 l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
++||+++|++ +.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++.......+..
T Consensus 2 ~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~~---- 75 (211)
T cd03225 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL--LGPTSGEVLVDGKDLTKLSLKELRR---- 75 (211)
T ss_pred ceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEEcccCCHHHHHh----
Confidence 6799999987 7899999999999999999999999999999999985 4678899999887664322111111
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
...++.+... ...+..++.+++.... ............++.++++.+|+. ...++++.+|||||+|||+||||
T Consensus 76 ---~i~~~~q~~~--~~~~~~t~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~lara 148 (211)
T cd03225 76 ---KVGLVFQNPD--DQFFGPTVEEEVAFGL-ENLGLPEEEIEERVEEALELVGLE-GLRDRSPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred ---hceEEecChh--hhcCCCcHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHHHH
Confidence 1112221110 0112334444442211 010011112345678899999997 45788999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCE
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQK 366 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~ 366 (548)
|+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999765 4699999999999999999999999884
No 68
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-39 Score=332.00 Aligned_cols=218 Identities=26% Similarity=0.373 Sum_probs=166.8
Q ss_pred cEEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
+|+++||+++|+ +..+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+..+.......+..
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~~-- 79 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGI--YLPQRGRVKVMGREVNAENEKWVRS-- 79 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCceEEEECCEECCCCCHHHHHh--
Confidence 589999999996 56799999999999999999999999999999999985 4678999999988764322111111
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
...++++.. ....+..++.+++.... ............++..+|+.+|+. ...++++.+|||||+|||+||
T Consensus 80 -----~i~~v~q~~--~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~~qrv~la 150 (274)
T PRK13647 80 -----KVGLVFQDP--DDQVFSSTVWDDVAFGP-VNMGLDKDEVERRVEEALKAVRMW-DFRDKPPYHLSYGQKKRVAIA 150 (274)
T ss_pred -----hEEEEecCh--hhhhccCcHHHHHHhhH-HHcCCCHHHHHHHHHHHHHHCCCH-HHhcCChhhCCHHHHHHHHHH
Confidence 111222211 01112234444443111 011111112345678899999997 467999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+.|
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~-g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAE-GDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-CCHHHh
Confidence 9999999999999999999999999999999765 57999999999999999999999999999865 555554
No 69
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=7.2e-40 Score=326.33 Aligned_cols=221 Identities=21% Similarity=0.317 Sum_probs=164.3
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|.....|.+|+|.+.+.++..........
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~---- 76 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERAR---- 76 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhc----
Confidence 4689999999988899999999999999999999999999999999985212578899999887664322111000
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhc------CCCChHHHHHHHHHhCCCChhhhhcccC-CCCHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI------GADSAEPRARRILAGLGFSRAMQDRATK-NFSGGWRM 299 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~------~~~~~~~~~~~~L~~lgl~~~~~~~~~~-~LSGGqkq 299 (548)
....+..+.. ......++.+++.......... .......++.++++.+|+.....++++. +|||||||
T Consensus 77 --~~i~~v~q~~---~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~q 151 (243)
T TIGR01978 77 --AGLFLAFQYP---EEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKK 151 (243)
T ss_pred --cceEeeeccc---cccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHH
Confidence 0011111111 1112233444433221111100 1112245678899999997545677776 59999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhh-cCEEEEEeCCEEEEEcCCHH
Q psy11936 300 RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNV-CNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 300 RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~v-adrIi~L~~G~i~~~~g~y~ 375 (548)
||+|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+ ||+|++|++|+++. .|+.+
T Consensus 152 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~-~g~~~ 230 (243)
T TIGR01978 152 RNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVK-SGDVE 230 (243)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEE-ecCHH
Confidence 999999999999999999999999999999999999876 47999999999999998 89999999999975 46766
Q ss_pred HH
Q psy11936 376 MF 377 (548)
Q Consensus 376 ~f 377 (548)
.+
T Consensus 231 ~~ 232 (243)
T TIGR01978 231 LA 232 (243)
T ss_pred Hh
Confidence 54
No 70
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.8e-40 Score=335.15 Aligned_cols=219 Identities=23% Similarity=0.363 Sum_probs=166.3
Q ss_pred cEEEEeEEEEeCC-----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCch--h
Q psy11936 146 DIKVENFSISAKG-----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDL--T 218 (548)
Q Consensus 146 ~I~l~nls~~y~~-----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~--~ 218 (548)
.|+++||++.|++ +.+|+||||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+.++..... .
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~ 79 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGL--LKPTSGKIIIDGVDITDKKVKLS 79 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCccEEEECCEECCCcCccHH
Confidence 4889999999974 4699999999999999999999999999999999985 46889999999887643211 1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCC-hhhhhcccCCCCHHH
Q psy11936 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFS-RAMQDRATKNFSGGW 297 (548)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~-~~~~~~~~~~LSGGq 297 (548)
.+.. ..+++++... ...+..++.+++.... ............++.++|+.+||. ....++++.+|||||
T Consensus 80 ~~~~-------~ig~v~q~~~--~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq 149 (287)
T PRK13637 80 DIRK-------KVGLVFQYPE--YQLFEETIEKDIAFGP-INLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQ 149 (287)
T ss_pred HHhh-------ceEEEecCch--hccccccHHHHHHhHH-HHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHH
Confidence 1111 1122222110 1112334555443111 111111122345688999999996 235789999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCC
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~ 373 (548)
+|||+|||||+.+|+||||||||++||+.++.+|.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+
T Consensus 150 ~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~-g~ 228 (287)
T PRK13637 150 KRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQ-GT 228 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-CC
Confidence 99999999999999999999999999999999999998764 57999999999999999999999999999975 55
Q ss_pred HHHH
Q psy11936 374 YSMF 377 (548)
Q Consensus 374 y~~f 377 (548)
.+++
T Consensus 229 ~~~~ 232 (287)
T PRK13637 229 PREV 232 (287)
T ss_pred HHHH
Confidence 5443
No 71
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-40 Score=328.07 Aligned_cols=215 Identities=27% Similarity=0.346 Sum_probs=164.1
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++...... .
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~--~---- 73 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGL--ERPDSGTILFGGEDATDVPVQ--E---- 73 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEECCcCCcc--c----
Confidence 58999999999988899999999999999999999999999999999985 467889999988765321110 0
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhc----CCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI----GADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~----~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
....++.+.. ......++.+++..... .... .......++.++++.+|+. ...++++.+|||||+|||
T Consensus 74 ---~~i~~v~q~~---~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl 145 (239)
T cd03296 74 ---RNVGFVFQHY---ALFRHMTVFDNVAFGLR-VKPRSERPPEAEIRAKVHELLKLVQLD-WLADRYPAQLSGGQRQRV 145 (239)
T ss_pred ---cceEEEecCC---cccCCCCHHHHHhhhhh-hccccccCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHH
Confidence 0011111110 11122344444422111 1000 0111234677899999997 457889999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+.+
T Consensus 146 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~-~~~~~~ 224 (239)
T cd03296 146 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQV-GTPDEV 224 (239)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEe-cCHHHH
Confidence 9999999999999999999999999999999998764 57999999999999999999999999999864 555443
No 72
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4.7e-40 Score=320.04 Aligned_cols=200 Identities=27% Similarity=0.417 Sum_probs=156.0
Q ss_pred EEeEEEEeCC-ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhh
Q psy11936 149 VENFSISAKG-NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKAD 227 (548)
Q Consensus 149 l~nls~~y~~-~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~ 227 (548)
++||+++|++ +.+|+++||+|.+|++++|+|||||||||||++|+|. ..|.+|.|.+.+..+.. ....
T Consensus 2 ~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~---~~~~------ 70 (205)
T cd03226 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGL--IKESSGSILLNGKPIKA---KERR------ 70 (205)
T ss_pred cccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEEhhh---HHhh------
Confidence 6799999987 7899999999999999999999999999999999985 46889999988876521 0000
Q ss_pred HHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHH
Q psy11936 228 VKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARAL 307 (548)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL 307 (548)
....++++... ...+..++.+++.... ... .....++.++++.+|+.. ..++++.+|||||||||+|||||
T Consensus 71 -~~i~~~~q~~~--~~~~~~tv~e~l~~~~---~~~--~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral 141 (205)
T cd03226 71 -KSIGYVMQDVD--YQLFTDSVREELLLGL---KEL--DAGNEQAETVLKDLDLYA-LKERHPLSLSGGQKQRLAIAAAL 141 (205)
T ss_pred -cceEEEecChh--hhhhhccHHHHHhhhh---hhc--CccHHHHHHHHHHcCCch-hcCCCchhCCHHHHHHHHHHHHH
Confidence 01111111110 0011223444432111 111 122457889999999974 57899999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy11936 308 YIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLY 368 (548)
Q Consensus 308 ~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~ 368 (548)
+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 142 LSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999999876 579999999999999999999999999874
No 73
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=6.8e-40 Score=328.27 Aligned_cols=225 Identities=27% Similarity=0.369 Sum_probs=166.3
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhH-HHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTA-VESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~-~~~~~ 224 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|.|.+.++.+....... .....
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLL--EQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCeEEEECCEEccccccccchhhHH
Confidence 58999999999988899999999999999999999999999999999985 4678899999888764221000 00000
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
........++.+.. ......++.+++.................++.++++.+|+.. ..++++.+|||||+|||+||
T Consensus 81 ~~~~~~i~~v~q~~---~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~Gq~qrv~la 156 (250)
T PRK11264 81 RQLRQHVGFVFQNF---NLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAG-KETSYPRRLSGGQQQRVAIA 156 (250)
T ss_pred HHhhhhEEEEecCc---ccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcc-hhhCChhhCChHHHHHHHHH
Confidence 00000111111111 111234555554321111111111123456788999999974 56889999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+++
T Consensus 157 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~-~~~~~~ 231 (250)
T PRK11264 157 RALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQ-GPAKAL 231 (250)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe-CCHHHH
Confidence 9999999999999999999999999999988764 57999999999999999999999999999864 666554
No 74
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.6e-40 Score=326.70 Aligned_cols=217 Identities=26% Similarity=0.345 Sum_probs=166.3
Q ss_pred EEEEeEEEEeCC-ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 147 IKVENFSISAKG-NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 147 I~l~nls~~y~~-~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
|+++||+++|++ +.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+..+.......+.
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~---- 74 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRL--IEPTSGEIFIDGEDIREQDPVELR---- 74 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCeEcCcCChHHhh----
Confidence 468999999988 7899999999999999999999999999999999985 467889999988765432211111
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh-hhhhcccCCCCHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR-AMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~-~~~~~~~~~LSGGqkqRvaLA 304 (548)
....++++.. ......++.+++.... .+..........++.++++.+|+.. ...++++.+|||||+|||+||
T Consensus 75 ---~~i~~~~q~~---~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~la 147 (242)
T cd03295 75 ---RKIGYVIQQI---GLFPHMTVEENIALVP-KLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVA 147 (242)
T ss_pred ---cceEEEccCc---cccCCCcHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHH
Confidence 0111222211 1122345555543211 1111111123456788999999974 367899999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||.+++..+||+|++|++|+++.. |+.+.+
T Consensus 148 ral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~-~~~~~~ 223 (242)
T cd03295 148 RALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQV-GTPDEI 223 (242)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe-cCHHHH
Confidence 9999999999999999999999999999988764 57999999999999999999999999999865 555443
No 75
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-40 Score=326.01 Aligned_cols=222 Identities=23% Similarity=0.336 Sum_probs=167.4
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc---hhHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD---LTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~---~~~~~~ 222 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++.... ......
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLL--EMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEecccccccchhhHHH
Confidence 58999999999988999999999999999999999999999999999985 4678899999888653110 000000
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
. .....++++.. ......++.+++......+..........++.++++.+|+. ...++.+.+|||||+|||+
T Consensus 80 ~----~~~i~~~~q~~---~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~ 151 (242)
T PRK11124 80 L----RRNVGMVFQQY---NLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLK-PYADRFPLHLSGGQQQRVA 151 (242)
T ss_pred H----HhheEEEecCc---cccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHH
Confidence 0 00111111111 11123345554432111111111112345678899999997 4678999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~ 378 (548)
|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||.+++..+||++++|++|+++. .|+++.+.
T Consensus 152 laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~-~~~~~~~~ 229 (242)
T PRK11124 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVE-QGDASCFT 229 (242)
T ss_pred HHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHhc
Confidence 999999999999999999999999999999998864 5799999999999999999999999999985 47776653
No 76
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=5e-40 Score=326.29 Aligned_cols=218 Identities=23% Similarity=0.321 Sum_probs=164.3
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++||+++|+++.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+..+..........
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~~~---- 74 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGF--LRPTSGSVLFDGEDITGLPPHEIAR---- 74 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCC--CCCCCceEEECCEECCCCCHHHHHh----
Confidence 4689999999988899999999999999999999999999999999985 3678899999887664322111100
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhc---------CCCChHHHHHHHHHhCCCChhhhhcccCCCCHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI---------GADSAEPRARRILAGLGFSRAMQDRATKNFSGGW 297 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~---------~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 297 (548)
....++++.. ......++.+++.......... .......++.++++.+|+.. ..++++.+|||||
T Consensus 75 --~~i~~v~q~~---~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~ 148 (236)
T cd03219 75 --LGIGRTFQIP---RLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD-LADRPAGELSYGQ 148 (236)
T ss_pred --cCEEEEeccc---ccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccc-hhhCChhhCCHHH
Confidence 0011111111 1112234555443211100000 01122446788999999974 5788999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
+|||+|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++. .|+.
T Consensus 149 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~-~~~~ 227 (236)
T cd03219 149 QRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIA-EGTP 227 (236)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe-ecCH
Confidence 99999999999999999999999999999999999999764 4799999999999999999999999999985 4665
Q ss_pred HHH
Q psy11936 375 SMF 377 (548)
Q Consensus 375 ~~f 377 (548)
+++
T Consensus 228 ~~~ 230 (236)
T cd03219 228 DEV 230 (236)
T ss_pred HHh
Confidence 543
No 77
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-40 Score=343.55 Aligned_cols=219 Identities=25% Similarity=0.345 Sum_probs=166.9
Q ss_pred cEEEEeEEEEeC----CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 146 DIKVENFSISAK----GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~----~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
+|+++||+++|+ ++.+|+|+||+|++|+++||+|||||||||||++|+|. ..|.+|+|.+.++++.........
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl--~~p~~G~I~~~g~~i~~~~~~~~~ 78 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLL--ERPTSGRVLVDGQDLTALSEKELR 78 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCceEEEECCEECCcCCHHHHH
Confidence 488999999997 36799999999999999999999999999999999985 467899999998876432211110
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
.. .....++++. ...+...++.+++.... .+..........++.++++.+|+.. ..++++.+|||||||||
T Consensus 79 ~~----~~~ig~v~q~---~~l~~~~tv~eni~~~~-~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LSgGq~qRv 149 (343)
T PRK11153 79 KA----RRQIGMIFQH---FNLLSSRTVFDNVALPL-ELAGTPKAEIKARVTELLELVGLSD-KADRYPAQLSGGQKQRV 149 (343)
T ss_pred HH----hcCEEEEeCC---CccCCCCcHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHH
Confidence 00 0111111111 11122345555553221 1111111123457788999999974 57899999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.++
T Consensus 150 ~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~-g~~~~ 227 (343)
T PRK11153 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQ-GTVSE 227 (343)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-cCHHH
Confidence 9999999999999999999999999999999998765 57999999999999999999999999999865 54443
No 78
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=4.5e-40 Score=345.78 Aligned_cols=216 Identities=27% Similarity=0.346 Sum_probs=168.3
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
|.|+++||+++|++..+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.++++++..... ..
T Consensus 1 ~~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl--~~p~~G~I~i~g~~i~~~~~--~~--- 73 (353)
T PRK10851 1 MSIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGL--EHQTSGHIRFHGTDVSRLHA--RD--- 73 (353)
T ss_pred CEEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEECCCCCH--HH---
Confidence 358999999999988999999999999999999999999999999999985 46889999999987643211 00
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHH---hcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELK---AIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~---~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
+...++++. ...+...++.+++........ .........++.++|+.+|+. ...++++.+|||||+|||
T Consensus 74 ----r~i~~v~Q~---~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGq~QRv 145 (353)
T PRK10851 74 ----RKVGFVFQH---YALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLA-HLADRYPAQLSGGQKQRV 145 (353)
T ss_pred ----CCEEEEecC---cccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHH
Confidence 111122221 112234566665532211000 011112356788999999997 467999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
+|||||+.+|+||||||||++||+.++..+.+.|.++ +.|+|+||||++++..+||+|++|++|+++.+ |+.++
T Consensus 146 alArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~-g~~~~ 223 (353)
T PRK10851 146 ALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQA-GTPDQ 223 (353)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-cCHHH
Confidence 9999999999999999999999999998888887654 57999999999999999999999999999976 44433
No 79
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=7.7e-40 Score=326.33 Aligned_cols=221 Identities=25% Similarity=0.322 Sum_probs=164.6
Q ss_pred cEEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
+|+++||+++|+ ++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++...........
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~~~~- 77 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRL--VEPSSGSILLEGTDITKLRGKKLRKL- 77 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--cCCCccEEEECCEEhhhCCHHHHHHH-
Confidence 378999999998 77899999999999999999999999999999999985 46788999998876532211110000
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHH-------HHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYE-------ELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGW 297 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~-------~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 297 (548)
.....++++.. ......++.+++..... .+..........++.++++.+|+. ...++++.+|||||
T Consensus 78 ---~~~i~~v~q~~---~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~ 150 (243)
T TIGR02315 78 ---RRRIGMIFQHY---NLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLA-DKAYQRADQLSGGQ 150 (243)
T ss_pred ---HhheEEEcCCC---cccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHH
Confidence 01111111110 11122344444321100 000000112345678899999997 45788999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCC
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~ 373 (548)
+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++. .|+
T Consensus 151 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~-~~~ 229 (243)
T TIGR02315 151 QQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVF-DGA 229 (243)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe-cCC
Confidence 99999999999999999999999999999999999998765 5799999999999999999999999999985 466
Q ss_pred HHHH
Q psy11936 374 YSMF 377 (548)
Q Consensus 374 y~~f 377 (548)
.+.+
T Consensus 230 ~~~~ 233 (243)
T TIGR02315 230 PSEL 233 (243)
T ss_pred HHHh
Confidence 6554
No 80
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-39 Score=323.53 Aligned_cols=220 Identities=21% Similarity=0.325 Sum_probs=166.3
Q ss_pred cEEEEeEEEEeCCc----eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 146 DIKVENFSISAKGN----DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~~~----~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
+|+++||+++|+++ ++|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++++.........
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~ 78 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGL--ERPTSGSVLVDGTDLTLLSGKELR 78 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEEcccCCHHHHH
Confidence 37899999999876 899999999999999999999999999999999985 467889999998876432211110
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
.. .....++++. ...+...++.+++..... ............+.++++.+|+. ...++++.+|||||+|||
T Consensus 79 ~~----~~~i~~~~q~---~~~~~~~t~~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv 149 (233)
T cd03258 79 KA----RRRIGMIFQH---FNLLSSRTVFENVALPLE-IAGVPKAEIEERVLELLELVGLE-DKADAYPAQLSGGQKQRV 149 (233)
T ss_pred HH----HhheEEEccC---cccCCCCcHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHCCCh-hhhhcChhhCCHHHHHHH
Confidence 00 0111112211 111223455555432111 11111112245678899999997 456889999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
+|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||.+++..+||++++|++|+++.. |+.+++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~-~~~~~~ 228 (233)
T cd03258 150 GIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEE-GTVEEV 228 (233)
T ss_pred HHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-cCHHHH
Confidence 9999999999999999999999999999999998764 57999999999999999999999999999864 565543
No 81
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=8.2e-40 Score=322.67 Aligned_cols=214 Identities=26% Similarity=0.381 Sum_probs=158.7
Q ss_pred cEEEEeEEEEeCCc----eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 146 DIKVENFSISAKGN----DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~~~----~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
+|+++||+++|++. .+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+..+...+.....
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~ 78 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGL--LKPTSGSIIFDGKDLLKLSRRLRK 78 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEEccccchhhHH
Confidence 37899999999765 799999999999999999999999999999999985 467889999988766432110000
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCC--C-hHHH-HHHHHHhCCCChhhhhcccCCCCHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD--S-AEPR-ARRILAGLGFSRAMQDRATKNFSGGW 297 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~--~-~~~~-~~~~L~~lgl~~~~~~~~~~~LSGGq 297 (548)
.. .....++.+.... ......++.+++... +...+.. . .... +.++++.+++.....++++.+|||||
T Consensus 79 ~~----~~~i~~~~q~~~~-~~~~~~tv~~nl~~~---~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~ 150 (228)
T cd03257 79 IR----RKEIQMVFQDPMS-SLNPRMTIGEQIAEP---LRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQ 150 (228)
T ss_pred Hh----hccEEEEecCchh-hcCCcCCHHHHHHHH---HHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHH
Confidence 00 0011111111100 011223444444221 1111111 1 1122 25789999996446788999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.
T Consensus 151 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 226 (228)
T cd03257 151 RQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE 226 (228)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEe
Confidence 99999999999999999999999999999999999998765 5799999999999999999999999999875
No 82
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=4.1e-40 Score=321.74 Aligned_cols=210 Identities=25% Similarity=0.388 Sum_probs=158.9
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++||+++|+++.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++.+...... ....
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~-~~~~--- 74 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLL--EEPDSGTIIIDGLKLTDDKKN-INEL--- 74 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEECCccchh-HHHH---
Confidence 4689999999988999999999999999999999999999999999985 467889999988765321100 0000
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
.....++.+.. ......++.+++.................++.++++.+|+.. ..++++.+|||||+|||+||||
T Consensus 75 -~~~i~~~~q~~---~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~a 149 (213)
T cd03262 75 -RQKVGMVFQQF---NLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLAD-KADAYPAQLSGGQQQRVAIARA 149 (213)
T ss_pred -HhcceEEeccc---ccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHh-HhhhCccccCHHHHHHHHHHHH
Confidence 01111111111 111223454544321111111111123456788999999974 5789999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
|+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|++
T Consensus 150 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 150 LAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999865 57999999999999999999999999874
No 83
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1.1e-39 Score=328.59 Aligned_cols=226 Identities=26% Similarity=0.336 Sum_probs=167.4
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchh--HH---
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLT--AV--- 220 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~--~~--- 220 (548)
.|+++||++.|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+..+...... .+
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (257)
T PRK10619 5 KLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFL--EKPSEGSIVVNGQTINLVRDKDGQLKVA 82 (257)
T ss_pred cEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCeEEEECCEEcccccccccccccc
Confidence 48999999999988999999999999999999999999999999999985 457889999988765321000 00
Q ss_pred H-HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHH
Q psy11936 221 E-SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRM 299 (548)
Q Consensus 221 ~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkq 299 (548)
. ...........++++.. ......++.+++......+..........++.++++.+|+.....++++.+|||||+|
T Consensus 83 ~~~~~~~~~~~i~~v~q~~---~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~q 159 (257)
T PRK10619 83 DKNQLRLLRTRLTMVFQHF---NLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQ 159 (257)
T ss_pred cchHHHHHhhceEEEecCc---ccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHH
Confidence 0 00000000111111110 1111234555543211111111112234577889999999754457889999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 300 RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 300 RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
||+|||||+.+|+||||||||++||+.++.+|.++|.++ +.|||+||||++++..+||+|++|++|+++. .|+++.
T Consensus 160 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~ 238 (257)
T PRK10619 160 RVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE-EGAPEQ 238 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHH
Confidence 999999999999999999999999999999999988765 5799999999999999999999999999986 477766
Q ss_pred H
Q psy11936 377 F 377 (548)
Q Consensus 377 f 377 (548)
+
T Consensus 239 ~ 239 (257)
T PRK10619 239 L 239 (257)
T ss_pred h
Confidence 5
No 84
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-39 Score=333.93 Aligned_cols=220 Identities=24% Similarity=0.331 Sum_probs=166.1
Q ss_pred cEEEEeEEEEeCCc-----eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCch-hH
Q psy11936 146 DIKVENFSISAKGN-----DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDL-TA 219 (548)
Q Consensus 146 ~I~l~nls~~y~~~-----~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~-~~ 219 (548)
+|+++||+++|+.. .+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+..+..... ..
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~~~~~~~ 78 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGL--LQPTEGKVTVGDIVVSSTSKQKE 78 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcC--CCCCCcEEEECCEECcccccccc
Confidence 48899999999732 599999999999999999999999999999999985 46889999998887632110 00
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcC--CCChHHHHHHHHHhCCCChhhhhcccCCCCHHH
Q psy11936 220 VESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG--ADSAEPRARRILAGLGFSRAMQDRATKNFSGGW 297 (548)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~--~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 297 (548)
.... .....++.+.. ....+..++.+++... ....+ ......++.++|+.+|+.....++++.+|||||
T Consensus 79 ~~~~----~~~ig~v~q~~--~~~l~~~tv~~~l~~~---~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq 149 (288)
T PRK13643 79 IKPV----RKKVGVVFQFP--ESQLFEETVLKDVAFG---PQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQ 149 (288)
T ss_pred HHHH----HhhEEEEecCc--chhcccchHHHHHHhH---HHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHH
Confidence 0000 01111222111 0012223444444311 11112 122345688999999996556789999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
||||+|||||+.+|+||||||||++||+.++.+|.++|..+ +.|||+||||++++..+||+|++|++|+++.. |+.
T Consensus 150 kqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~-g~~ 228 (288)
T PRK13643 150 MRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISC-GTP 228 (288)
T ss_pred HHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE-CCH
Confidence 99999999999999999999999999999999999988754 57999999999999999999999999999865 666
Q ss_pred HHH
Q psy11936 375 SMF 377 (548)
Q Consensus 375 ~~f 377 (548)
+++
T Consensus 229 ~~~ 231 (288)
T PRK13643 229 SDV 231 (288)
T ss_pred HHH
Confidence 554
No 85
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=6.1e-40 Score=369.60 Aligned_cols=210 Identities=27% Similarity=0.407 Sum_probs=167.2
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.+|+++||+++|+++++|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|.|.+ +..+..
T Consensus 318 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~--~~p~~G~i~~-~~~~~i---------- 384 (635)
T PRK11147 318 IVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQ--LQADSGRIHC-GTKLEV---------- 384 (635)
T ss_pred ceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCCcEEEE-CCCcEE----------
Confidence 369999999999988999999999999999999999999999999999985 3677888866 332100
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
+++.+.. .......++.+++..... ..........+..+|..|+|.....++++.+|||||||||+||
T Consensus 385 -------~y~~q~~--~~l~~~~tv~e~l~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la 452 (635)
T PRK11147 385 -------AYFDQHR--AELDPEKTVMDNLAEGKQ---EVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLA 452 (635)
T ss_pred -------EEEeCcc--cccCCCCCHHHHHHhhcc---cccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHH
Confidence 0000000 001112233333321100 0000112446788999999975567899999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEe-CCEEEEEcCCHHHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLD-QQKLYYYKGNYSMFKK 379 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~-~G~i~~~~g~y~~f~~ 379 (548)
|||+.+|+||||||||||||+.++.+|.++|.++++|||+||||++++..+||+|++|+ +|+++.|.|+|++|..
T Consensus 453 ~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 453 RLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 99999999999999999999999999999999998999999999999999999999998 8999999999999964
No 86
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-39 Score=339.98 Aligned_cols=219 Identities=20% Similarity=0.324 Sum_probs=164.9
Q ss_pred cEEEEeEEEEeCC----------ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccC
Q psy11936 146 DIKVENFSISAKG----------NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVAD 215 (548)
Q Consensus 146 ~I~l~nls~~y~~----------~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~ 215 (548)
+|+++||++.|+. ..+|+||||+|.+|+++||+|+||||||||+++|+|. ..|.+|+|.+.+.++...
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl--~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMI--ETPTGGELYYQGQDLLKA 82 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcC--CCCCCcEEEECCEEcCcC
Confidence 5899999999962 4699999999999999999999999999999999985 357789999998876433
Q ss_pred chhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCH
Q psy11936 216 DLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSG 295 (548)
Q Consensus 216 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 295 (548)
........ .....++++... .......++.+++.................++.++|+.+||.....++++.+|||
T Consensus 83 ~~~~~~~~----r~~i~~v~Q~~~-~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSg 157 (327)
T PRK11308 83 DPEAQKLL----RQKIQIVFQNPY-GSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSG 157 (327)
T ss_pred CHHHHHHH----hCCEEEEEcCch-hhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCH
Confidence 22111110 011122222110 0111222333333221111011112223467889999999975567999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
||+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||+.++..+||+|++|++|++++++
T Consensus 158 Gq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g 237 (327)
T PRK11308 158 GQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKG 237 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999988654 679999999999999999999999999999864
No 87
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.9e-40 Score=321.86 Aligned_cols=205 Identities=29% Similarity=0.370 Sum_probs=158.0
Q ss_pred EEEEeEEEEeCC----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 147 IKVENFSISAKG----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 147 I~l~nls~~y~~----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
|+++||+++|++ +.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++....
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~------ 72 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGL--ERPTSGEVLVDGEPVTGPG------ 72 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEECcccc------
Confidence 468999999987 7899999999999999999999999999999999985 4678899998887653110
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
....++++.. ......++.+++.... .+..........++.++++.+|+.. ..++++.+|||||||||+
T Consensus 73 ------~~i~~v~q~~---~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrl~ 141 (220)
T cd03293 73 ------PDRGYVFQQD---ALLPWLTVLDNVALGL-ELQGVPKAEARERAEELLELVGLSG-FENAYPHQLSGGMRQRVA 141 (220)
T ss_pred ------CcEEEEeccc---ccccCCCHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCChh-hhhCCcccCCHHHHHHHH
Confidence 0011111110 1111234444432211 1111111123456788999999974 568899999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEe--CCEEEEE
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLD--QQKLYYY 370 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~--~G~i~~~ 370 (548)
|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|+ +|+++..
T Consensus 142 la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~ 215 (220)
T cd03293 142 LARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAE 215 (220)
T ss_pred HHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEE
Confidence 999999999999999999999999999999998764 5799999999999999999999999 7998753
No 88
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-39 Score=332.26 Aligned_cols=219 Identities=22% Similarity=0.362 Sum_probs=165.8
Q ss_pred cEEEEeEEEEeCC-----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc----
Q psy11936 146 DIKVENFSISAKG-----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD---- 216 (548)
Q Consensus 146 ~I~l~nls~~y~~-----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~---- 216 (548)
.|+++||+++|++ ..+|+||||+|.+|+++||+|+|||||||||++|+|. ..|..|+|.+++.++....
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl--~~p~~G~i~~~g~~i~~~~~~~~ 79 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINAL--LKPTTGTVTVDDITITHKTKDKY 79 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCEECccccccch
Confidence 4899999999964 3699999999999999999999999999999999984 4688999999988764311
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHH
Q psy11936 217 LTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGG 296 (548)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 296 (548)
...+.. ..+++++.. ....+..++.+++..... ...........++.++|..+|+.....++++.+||||
T Consensus 80 ~~~~~~-------~ig~v~q~~--~~~l~~~tv~e~i~~~~~-~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgG 149 (286)
T PRK13646 80 IRPVRK-------RIGMVFQFP--ESQLFEDTVEREIIFGPK-NFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGG 149 (286)
T ss_pred HHHHHh-------heEEEecCh--HhccchhhHHHHHHhhHH-HcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHH
Confidence 111111 112222211 001122244444321110 0011112244677899999999744678899999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
|+|||+|||||+.+|+||||||||++||+.++.+|.++|.++ +.|||+||||++++..+||+|++|++|+++.. |
T Consensus 150 q~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~-g 228 (286)
T PRK13646 150 QMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQ-T 228 (286)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE-C
Confidence 999999999999999999999999999999999999998764 57999999999999999999999999999865 6
Q ss_pred CHHHH
Q psy11936 373 NYSMF 377 (548)
Q Consensus 373 ~y~~f 377 (548)
+.+++
T Consensus 229 ~~~~~ 233 (286)
T PRK13646 229 SPKEL 233 (286)
T ss_pred CHHHH
Confidence 65553
No 89
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.8e-40 Score=319.52 Aligned_cols=206 Identities=25% Similarity=0.421 Sum_probs=160.3
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++||++.|+++.+|+++||+|.+|++++|+|||||||||||++|+|. ..|.+|+|.+.++.+.. ...
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~----~~~----- 69 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGI--ILPDSGEVLFDGKPLDI----AAR----- 69 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCCchhH----HHH-----
Confidence 4689999999988899999999999999999999999999999999985 46788999988765421 000
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
....++.+.. ......++.+++... ..+...........+.++++.+|+.. ..++++.+|||||||||+||||
T Consensus 70 --~~i~~~~q~~---~~~~~~tv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~a 142 (210)
T cd03269 70 --NRIGYLPEER---GLYPKMKVIDQLVYL-AQLKGLKKEEARRRIDEWLERLELSE-YANKRVEELSKGNQQKVQFIAA 142 (210)
T ss_pred --ccEEEeccCC---cCCcCCcHHHHHHHH-HHHcCCChHHHHHHHHHHHHHcCChH-HHhCcHhhCCHHHHHHHHHHHH
Confidence 0111111111 111223455544321 11111111223456788999999974 5688899999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|+.+|++|||||||++||+.++.++.++|..+ +.|||+||||++++..+||++++|++|+++.+
T Consensus 143 l~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 209 (210)
T cd03269 143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLY 209 (210)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEec
Confidence 99999999999999999999999999999865 47999999999999999999999999999754
No 90
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.1e-39 Score=340.03 Aligned_cols=224 Identities=20% Similarity=0.329 Sum_probs=169.1
Q ss_pred ccEEEEeEEEEeCC-------------ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEecee
Q psy11936 145 VDIKVENFSISAKG-------------NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQE 211 (548)
Q Consensus 145 ~~I~l~nls~~y~~-------------~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~ 211 (548)
.+|+++||+++|+. ..+|+||||+|.+||++||+|+||||||||+++|+|. ..|.+|+|.+.+++
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl--~~p~~G~I~~~G~~ 84 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGL--VKATDGEVAWLGKD 84 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCC--CCCCCcEEEECCEE
Confidence 36999999999962 4689999999999999999999999999999999985 35788999999987
Q ss_pred eccCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHH-hcCCCChHHHHHHHHHhCCCChhhhhccc
Q psy11936 212 VVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELK-AIGADSAEPRARRILAGLGFSRAMQDRAT 290 (548)
Q Consensus 212 i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~~~~~~L~~lgl~~~~~~~~~ 290 (548)
+........... .....++++... .......++.+++........ .........++.++|+.+|+.....++++
T Consensus 85 i~~~~~~~~~~~----r~~i~~v~Q~~~-~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p 159 (331)
T PRK15079 85 LLGMKDDEWRAV----RSDIQMIFQDPL-ASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYP 159 (331)
T ss_pred CCcCCHHHHHHH----hCceEEEecCch-hhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCc
Confidence 753322111110 011122222210 011223455555543221110 11112334567899999999756779999
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCE
Q psy11936 291 KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQK 366 (548)
Q Consensus 291 ~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~ 366 (548)
.+|||||+|||+|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||+.++..+||+|++|.+|+
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ 239 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGH 239 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999998888654 6799999999999999999999999999
Q ss_pred EEEEcCCHHH
Q psy11936 367 LYYYKGNYSM 376 (548)
Q Consensus 367 i~~~~g~y~~ 376 (548)
+++. |+.++
T Consensus 240 ive~-g~~~~ 248 (331)
T PRK15079 240 AVEL-GTYDE 248 (331)
T ss_pred EEEE-cCHHH
Confidence 9975 55443
No 91
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-39 Score=332.58 Aligned_cols=222 Identities=22% Similarity=0.316 Sum_probs=165.8
Q ss_pred cEEEEeEEEEeCC-----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc-hhH
Q psy11936 146 DIKVENFSISAKG-----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD-LTA 219 (548)
Q Consensus 146 ~I~l~nls~~y~~-----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~-~~~ 219 (548)
.|+++||+++|++ +.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++.... ...
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~ 79 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNAL--LKPSSGTITIAGYHITPETGNKN 79 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCEECccccccch
Confidence 5889999999974 4699999999999999999999999999999999985 4688999999988763211 000
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHH
Q psy11936 220 VESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRM 299 (548)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkq 299 (548)
.... .....++.+.. ....+..++.+++.... ............++.++|+.+|+.....++++.+|||||||
T Consensus 80 ~~~~----~~~ig~v~q~~--~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~q 152 (287)
T PRK13641 80 LKKL----RKKVSLVFQFP--EAQLFENTVLKDVEFGP-KNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMR 152 (287)
T ss_pred HHHH----HhceEEEEeCh--hhhhccchHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHH
Confidence 0000 00111111110 00112234444442111 11111112234568899999999744678999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 300 RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 300 RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
||+|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+.
T Consensus 153 rl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~-g~~~~ 231 (287)
T PRK13641 153 RVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKH-ASPKE 231 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHHH
Confidence 999999999999999999999999999999999998865 47999999999999999999999999999864 55554
Q ss_pred H
Q psy11936 377 F 377 (548)
Q Consensus 377 f 377 (548)
+
T Consensus 232 ~ 232 (287)
T PRK13641 232 I 232 (287)
T ss_pred H
Confidence 4
No 92
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-39 Score=339.93 Aligned_cols=225 Identities=18% Similarity=0.216 Sum_probs=165.0
Q ss_pred cEEEEeEEEEeCC----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCC--CCCCeEEEEeceeeccCchhH
Q psy11936 146 DIKVENFSISAKG----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK--VPPNIDILYCEQEVVADDLTA 219 (548)
Q Consensus 146 ~I~l~nls~~y~~----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~--~~~~g~I~~~~q~i~~~~~~~ 219 (548)
+|+++||++.|+. ..+|+||||+|.+|+++||||+||||||||+++|+|...+ .+.+|+|.+.++++.......
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 5899999999976 4699999999999999999999999999999999996321 136899999998775433222
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh--hhhhcccCCCCHHH
Q psy11936 220 VESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR--AMQDRATKNFSGGW 297 (548)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~--~~~~~~~~~LSGGq 297 (548)
...... ....++++... .......++.+++.................++.++|+.+||.. ...++++.+|||||
T Consensus 83 ~~~~r~---~~i~~v~Q~~~-~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq 158 (326)
T PRK11022 83 RRNLVG---AEVAMIFQDPM-TSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGM 158 (326)
T ss_pred HHHHhC---CCEEEEecCch-hhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHH
Confidence 111100 01112222110 0011122333333222111111111223567889999999973 45688999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCC
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~ 373 (548)
+|||+|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||+.++..+||+|++|.+|+|++. |+
T Consensus 159 ~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~-g~ 237 (326)
T PRK11022 159 SQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET-GK 237 (326)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-CC
Confidence 99999999999999999999999999999999998888764 57999999999999999999999999999986 44
Q ss_pred HH
Q psy11936 374 YS 375 (548)
Q Consensus 374 y~ 375 (548)
.+
T Consensus 238 ~~ 239 (326)
T PRK11022 238 AH 239 (326)
T ss_pred HH
Confidence 33
No 93
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=9e-40 Score=318.62 Aligned_cols=203 Identities=27% Similarity=0.382 Sum_probs=159.9
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++||+++|+++++|+++||+|.+|++++|+|||||||||||++|+|. ..|.+|+|.+.+.++... ....
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~--~~~~----- 71 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGL--IKPDSGEITFDGKSYQKN--IEAL----- 71 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--cCCCceEEEECCCcccch--HHHH-----
Confidence 4689999999888999999999999999999999999999999999985 367889999988755321 1000
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
....++++. ....+..++.+++..... ..+ ....++.++++.+|+.. ..++++.+|||||||||+||||
T Consensus 72 --~~i~~~~q~---~~~~~~~tv~e~l~~~~~---~~~--~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~a 140 (208)
T cd03268 72 --RRIGALIEA---PGFYPNLTARENLRLLAR---LLG--IRKKRIDEVLDVVGLKD-SAKKKVKGFSLGMKQRLGIALA 140 (208)
T ss_pred --hhEEEecCC---CccCccCcHHHHHHHHHH---hcC--CcHHHHHHHHHHcCCHH-HHhhhHhhCCHHHHHHHHHHHH
Confidence 111111111 111223455555432111 111 13457888999999974 5688999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
|+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||++++|++|+++.
T Consensus 141 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~ 206 (208)
T cd03268 141 LLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIE 206 (208)
T ss_pred HhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence 99999999999999999999999999988764 5799999999999999999999999999875
No 94
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=5.4e-40 Score=349.57 Aligned_cols=218 Identities=28% Similarity=0.388 Sum_probs=169.7
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+++||+|.+|+++||+||||||||||||+|+|. ..|.+|.|.+++..+.......+..
T Consensus 3 ~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGl--l~p~sG~I~l~G~~i~~~~~~~~~~--- 77 (402)
T PRK09536 3 MIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGT--LTPTAGTVLVAGDDVEALSARAASR--- 77 (402)
T ss_pred eEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC--CCCCCcEEEECCEEcCcCCHHHHhc---
Confidence 58999999999999999999999999999999999999999999999985 4688999999998764322211111
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHH-HHHhcC--CCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYE-ELKAIG--ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~-~l~~~~--~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
..+++.+. ....+..++.+++..... ....+. ......++.++|+.+|+. ...++++.+|||||||||+
T Consensus 78 ----~ig~v~q~---~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~-~~~~~~~~~LSgGerQRv~ 149 (402)
T PRK09536 78 ----RVASVPQD---TSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVA-QFADRPVTSLSGGERQRVL 149 (402)
T ss_pred ----ceEEEccC---CCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHH
Confidence 11122111 112234455554432100 000111 112346788999999997 4679999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|||||+++|+||||||||++||+.++..+.++|+++ +.|||+||||++++.++||+|++|++|+++.+ |+.+++
T Consensus 150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~-G~~~ev 226 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAA-GPPADV 226 (402)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe-cCHHHH
Confidence 999999999999999999999999999999888765 57999999999999999999999999999864 676654
No 95
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-39 Score=332.88 Aligned_cols=217 Identities=21% Similarity=0.335 Sum_probs=165.3
Q ss_pred cEEEEeEEEEeCC-----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccC----c
Q psy11936 146 DIKVENFSISAKG-----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVAD----D 216 (548)
Q Consensus 146 ~I~l~nls~~y~~-----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~----~ 216 (548)
.|+++||+++|++ ..+|+||||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.++++.+... .
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~~~~~~~ 79 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGL--LQPTSGTVTIGERVITAGKKNKK 79 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCcEEEECCEECccccccch
Confidence 3889999999974 4699999999999999999999999999999999985 468889999999876421 1
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcC--CCChHHHHHHHHHhCCCChhhhhcccCCCC
Q psy11936 217 LTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG--ADSAEPRARRILAGLGFSRAMQDRATKNFS 294 (548)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~--~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 294 (548)
...... ...++++... ...+..++.+++... ....+ ......++.++|+.+||.....++++.+||
T Consensus 80 ~~~~~~-------~ig~v~q~~~--~~l~~~tv~eni~~~---~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LS 147 (290)
T PRK13634 80 LKPLRK-------KVGIVFQFPE--HQLFEETVEKDICFG---PMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELS 147 (290)
T ss_pred HHHHHh-------hEEEEeeCch--hhhhhhhHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCC
Confidence 111111 1111111100 011123444443211 11111 112345788899999997556789999999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|||+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++..
T Consensus 148 gGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~ 227 (290)
T PRK13634 148 GGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQ 227 (290)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999988764 57999999999999999999999999999864
Q ss_pred cCCHHHH
Q psy11936 371 KGNYSMF 377 (548)
Q Consensus 371 ~g~y~~f 377 (548)
|+.+++
T Consensus 228 -g~~~~~ 233 (290)
T PRK13634 228 -GTPREI 233 (290)
T ss_pred -CCHHHH
Confidence 665553
No 96
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.1e-39 Score=321.19 Aligned_cols=214 Identities=21% Similarity=0.269 Sum_probs=161.1
Q ss_pred cEEEEeEEEEe-CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISA-KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y-~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
+|+++||++.| +++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++...........
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~i~~~~~~~~~~~- 77 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGI--ERPSAGKIWFSGHDITRLKNREVPFL- 77 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEEcccCChhHHHHH-
Confidence 37899999999 677899999999999999999999999999999999985 46789999998876632211110000
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
.....+..+.. ...+..++.+++.... .+..........++.++++.+|+.. ..++++.+|||||+|||+||
T Consensus 78 ---~~~i~~~~q~~---~~~~~~tv~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la 149 (222)
T PRK10908 78 ---RRQIGMIFQDH---HLLMDRTVYDNVAIPL-IIAGASGDDIRRRVSAALDKVGLLD-KAKNFPIQLSGGEQQRVGIA 149 (222)
T ss_pred ---HhheEEEecCc---cccccccHHHHHHhHH-HhcCCCHHHHHHHHHHHHHHcCChh-hhhCCchhCCHHHHHHHHHH
Confidence 00111111111 1122334444442211 1111111122345778999999974 56889999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|||+.+|++|||||||++||+.++..+.++|..+ +.|||+||||++++..+||+|++|++|+++.-
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 218 (222)
T PRK10908 150 RAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHGG 218 (222)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEccC
Confidence 9999999999999999999999999998888765 57999999999999999999999999998643
No 97
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.2e-39 Score=322.78 Aligned_cols=217 Identities=23% Similarity=0.306 Sum_probs=164.2
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++||+++|+++.+|+++||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+..+..........
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~~---- 74 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL--VKPDSGKILLDGQDITKLPMHKRAR---- 74 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEecccCCHhHHHh----
Confidence 4689999999988999999999999999999999999999999999985 4678899999887653222111000
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
....++++. .......++.+++..... ...........++.++++.+|+. ...++.+.+|||||+|||+||||
T Consensus 75 --~~i~~~~q~---~~~~~~~tv~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~a 147 (232)
T cd03218 75 --LGIGYLPQE---ASIFRKLTVEENILAVLE-IRGLSKKEREEKLEELLEEFHIT-HLRKSKASSLSGGERRRVEIARA 147 (232)
T ss_pred --ccEEEecCC---ccccccCcHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHH
Confidence 001111111 111122345554432111 11111112345677899999997 46789999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|+.+|++|||||||++||+.++.++.++|..+ +.|||+||||++++..+||+|++|++|+++. .|+.+.+
T Consensus 148 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 220 (232)
T cd03218 148 LATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLA-EGTPEEI 220 (232)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE-EeCHHHh
Confidence 99999999999999999999999999988764 5799999999999999999999999999985 4665544
No 98
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-40 Score=345.89 Aligned_cols=214 Identities=25% Similarity=0.323 Sum_probs=167.2
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
.|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+..+..... ..
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl--~~p~~G~I~~~g~~i~~~~~--~~---- 74 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL--EDITSGDLFIGEKRMNDVPP--AE---- 74 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCceEEEECCEECCCCCH--hH----
Confidence 48999999999988899999999999999999999999999999999985 46889999998887642111 00
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
+...++++. ...+...++.+++..... +..........++.++|+.+|+. ...++++.+|||||||||+|||
T Consensus 75 ---~~i~~v~Q~---~~l~~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~l~~lgL~-~~~~~~~~~LSgGq~QRvaLAr 146 (369)
T PRK11000 75 ---RGVGMVFQS---YALYPHLSVAENMSFGLK-LAGAKKEEINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAIGR 146 (369)
T ss_pred ---CCEEEEeCC---cccCCCCCHHHHHHhHHh-hcCCCHHHHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHH
Confidence 011122211 112223456665532211 11111122345788999999997 4678999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|+++.+ |+.++
T Consensus 147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~-g~~~~ 220 (369)
T PRK11000 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQV-GKPLE 220 (369)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-cCHHH
Confidence 999999999999999999999999888887654 67999999999999999999999999999876 44443
No 99
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1e-39 Score=345.21 Aligned_cols=216 Identities=25% Similarity=0.326 Sum_probs=169.9
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|++..+|+++||+|.+|++++|+|||||||||||++|+|. ..|.+|+|.+.+..+..... ..
T Consensus 14 ~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl--~~p~~G~I~~~g~~i~~~~~--~~---- 85 (375)
T PRK09452 14 LVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGF--ETPDSGRIMLDGQDITHVPA--EN---- 85 (375)
T ss_pred eEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC--CCCCceEEEECCEECCCCCH--HH----
Confidence 58999999999988899999999999999999999999999999999985 46889999999987643211 00
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
+..+++++. ...++..++.+++..... ...........++.++++.+|+. ...++++.+|||||||||+|||
T Consensus 86 ---r~ig~vfQ~---~~lfp~ltv~eNi~~~l~-~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~p~~LSgGq~QRVaLAR 157 (375)
T PRK09452 86 ---RHVNTVFQS---YALFPHMTVFENVAFGLR-MQKTPAAEITPRVMEALRMVQLE-EFAQRKPHQLSGGQQQRVAIAR 157 (375)
T ss_pred ---CCEEEEecC---cccCCCCCHHHHHHHHHh-hcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHH
Confidence 111222221 112335566666543211 11111122345788999999998 4679999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
||+.+|+||||||||++||..++.+|.+.|+.+ +.|+|+||||..++..+||+|++|++|+++..+.+.+.|
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999988888654 689999999999999999999999999999774443333
No 100
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=8.5e-40 Score=344.48 Aligned_cols=213 Identities=24% Similarity=0.311 Sum_probs=168.2
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCC--eEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN--IDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~--g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+++|++..+|+|+||+|.+|++++|+|||||||||||++|+|. ..|.+ |+|.+.+.++..... ..
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl--~~p~~~~G~i~~~g~~~~~~~~--~~-- 78 (362)
T TIGR03258 5 GIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGF--VKAAGLTGRIAIADRDLTHAPP--HK-- 78 (362)
T ss_pred EEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCCEEEEECCEECCCCCH--HH--
Confidence 48899999999988899999999999999999999999999999999985 46778 999999887642111 10
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
+...++++. ...+...++.+++..... ...........++.++++.+||.. ..++++.+|||||||||+|
T Consensus 79 -----r~ig~vfQ~---~~l~p~~tv~enl~~~l~-~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSgGq~QRvaL 148 (362)
T TIGR03258 79 -----RGLALLFQN---YALFPHLKVEDNVAFGLR-AQKMPKADIAERVADALKLVGLGD-AAAHLPAQLSGGMQQRIAI 148 (362)
T ss_pred -----CCEEEEECC---cccCCCCcHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhcCCCc-hhhCChhhCCHHHHHHHHH
Confidence 111122211 112234566666643221 111112234567889999999974 6799999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc-----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW-----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~-----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~ 375 (548)
||||+.+|+||||||||++||+.++.++.+.|.++ +.|+|+||||++++..+||+|++|++|+++.. |+.+
T Consensus 149 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~-g~~~ 224 (362)
T TIGR03258 149 ARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAH-GEPQ 224 (362)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-cCHH
Confidence 99999999999999999999999999988887653 57999999999999999999999999999976 4444
No 101
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.4e-39 Score=318.16 Aligned_cols=210 Identities=25% Similarity=0.333 Sum_probs=158.3
Q ss_pred EEEEeEEEEeCC-ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 147 IKVENFSISAKG-NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 147 I~l~nls~~y~~-~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
|+++||+++|++ +.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++...........
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~i~~~~~~~~~~~-- 76 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKE--ELPTSGTIRVNGQDVSDLRGRAIPYL-- 76 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEEcccCCHHHHHHH--
Confidence 468999999964 6899999999999999999999999999999999985 46788999998876643221110000
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
.....++++.. ......++.+++..... ...........++.++++.+|+.. ..++++.+|||||+|||+|||
T Consensus 77 --~~~i~~v~q~~---~~~~~~t~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~lar 149 (214)
T cd03292 77 --RRKIGVVFQDF---RLLPDRNVYENVAFALE-VTGVPPREIRKRVPAALELVGLSH-KHRALPAELSGGEQQRVAIAR 149 (214)
T ss_pred --HHheEEEecCc---hhccCCcHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCCHH-HhhCChhhcCHHHHHHHHHHH
Confidence 01111111111 11222345554432211 111111123456788999999974 568899999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|++
T Consensus 150 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 150 AIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999998765 47999999999999999999999999874
No 102
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=3.2e-39 Score=326.79 Aligned_cols=224 Identities=21% Similarity=0.360 Sum_probs=166.1
Q ss_pred cEEEEeEEEEeC---------CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc
Q psy11936 146 DIKVENFSISAK---------GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD 216 (548)
Q Consensus 146 ~I~l~nls~~y~---------~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~ 216 (548)
+|+++||+++|+ ++.+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+.++....
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~~~ 79 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGL--EKPAQGTVSFRGQDLYQLD 79 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEEccccC
Confidence 488999999995 36799999999999999999999999999999999985 4688899999887664322
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHH
Q psy11936 217 LTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGG 296 (548)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 296 (548)
....... .....++++... .......++.+++......+..........++.++++.+|+.....++++.+||||
T Consensus 80 ~~~~~~~----~~~i~~v~q~~~-~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG 154 (265)
T TIGR02769 80 RKQRRAF----RRDVQLVFQDSP-SAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGG 154 (265)
T ss_pred HHHHHHH----hhceEEEecChh-hhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHH
Confidence 1110000 001111111110 00112234444443221111111222234578899999999645678899999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
|+|||+|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||++++|++|+++.. |
T Consensus 155 e~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~-g 233 (265)
T TIGR02769 155 QLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE-C 233 (265)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE-C
Confidence 999999999999999999999999999999998888888764 67999999999999999999999999999864 6
Q ss_pred CHHHH
Q psy11936 373 NYSMF 377 (548)
Q Consensus 373 ~y~~f 377 (548)
+.+++
T Consensus 234 ~~~~~ 238 (265)
T TIGR02769 234 DVAQL 238 (265)
T ss_pred CHHHH
Confidence 65544
No 103
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-39 Score=328.18 Aligned_cols=206 Identities=25% Similarity=0.284 Sum_probs=160.1
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++++..... .
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~-~------ 71 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGF--VPYQHGSITLDGKPVEGPGA-E------ 71 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEECCCCCC-c------
Confidence 37899999999888899999999999999999999999999999999985 46788999998876532110 0
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
..++.+. .......++.+++.... ............++.++|+.+|+.. ..++++.+|||||+|||+|||
T Consensus 72 -----~~~v~q~---~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGq~qrl~lar 141 (255)
T PRK11248 72 -----RGVVFQN---EGLLPWRNVQDNVAFGL-QLAGVEKMQRLEIAHQMLKKVGLEG-AEKRYIWQLSGGQRQRVGIAR 141 (255)
T ss_pred -----EEEEeCC---CccCCCCcHHHHHHhHH-HHcCCCHHHHHHHHHHHHHHcCChh-HhhCChhhCCHHHHHHHHHHH
Confidence 0111111 01112234444432211 1111111122456889999999974 568899999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEe--CCEEEEE
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLD--QQKLYYY 370 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~--~G~i~~~ 370 (548)
||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|+ +|+++..
T Consensus 142 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~ 212 (255)
T PRK11248 142 ALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVER 212 (255)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEE
Confidence 999999999999999999999999999998775 5799999999999999999999998 5998764
No 104
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1.2e-39 Score=320.28 Aligned_cols=213 Identities=23% Similarity=0.344 Sum_probs=162.6
Q ss_pred EEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 147 IKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 147 I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
|+++||++.|++ +++|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|.|.+.+.++.... ..+.
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~-~~~~--- 74 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE--LRPTSGTAYINGYSIRTDR-KAAR--- 74 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEecccch-HHHh---
Confidence 468999999987 7899999999999999999999999999999999985 4678999999887653211 1110
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
....++.+.. ......++.+++.... ............++.++++.+|+. ...++++.+|||||+|||+||
T Consensus 75 ----~~i~~v~q~~---~~~~~~tv~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la 145 (220)
T cd03263 75 ----QSLGYCPQFD---ALFDELTVREHLRFYA-RLKGLPKSEIKEEVELLLRVLGLT-DKANKRARTLSGGMKRKLSLA 145 (220)
T ss_pred ----hhEEEecCcC---CccccCCHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCH-HHHhChhhhCCHHHHHHHHHH
Confidence 1111222111 1112334444443211 111111112345678899999997 456889999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~--~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~ 375 (548)
|||+.+|++|||||||++||+.+..++.++|.++. .|||+||||++++..+||+|++|++|+++.. |+.+
T Consensus 146 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~-~~~~ 217 (220)
T cd03263 146 IALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCI-GSPQ 217 (220)
T ss_pred HHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEec-CCHH
Confidence 99999999999999999999999999999998753 6999999999999999999999999999864 5443
No 105
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-39 Score=328.89 Aligned_cols=216 Identities=20% Similarity=0.278 Sum_probs=163.3
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCch--hHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDL--TAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~--~~~~~~ 223 (548)
+|+++||+++|+++.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++++..... ..+..
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~~~~~~~~~~~- 77 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGL--LRPQKGAVLWQGKPLDYSKRGLLALRQ- 77 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC--CCCCccEEEECCEEcccccCCHHHHHh-
Confidence 48899999999988899999999999999999999999999999999985 46789999998887632111 11111
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCC--ChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD--SAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~--~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
...++++... ...+..+..+++... +...+.. ....++.++++.+|+.. ..++++.+|||||+|||
T Consensus 78 ------~i~~v~q~~~--~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrl 145 (271)
T PRK13638 78 ------QVATVFQDPE--QQIFYTDIDSDIAFS---LRNLGVPEAEITRRVDEALTLVDAQH-FRHQPIQCLSHGQKKRV 145 (271)
T ss_pred ------heEEEeeChh--hccccccHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHcCCHh-HhcCCchhCCHHHHHHH
Confidence 1111111100 001111222332211 1111111 22345778999999974 56889999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||++++|++|+++.. |+.+++
T Consensus 146 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~-g~~~~~ 223 (271)
T PRK13638 146 AIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTH-GAPGEV 223 (271)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHHHH
Confidence 9999999999999999999999999999999998775 57999999999999999999999999999865 555443
No 106
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=2.5e-39 Score=327.93 Aligned_cols=222 Identities=17% Similarity=0.253 Sum_probs=163.4
Q ss_pred cEEEEeEEEEeCC---------ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc
Q psy11936 146 DIKVENFSISAKG---------NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD 216 (548)
Q Consensus 146 ~I~l~nls~~y~~---------~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~ 216 (548)
+|+++||+++|++ .++|+|+||+|++|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++....
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGM--IEPTSGELLIDDHPLHFGD 81 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCC--CCCCCCEEEECCEECCCCc
Confidence 5899999999962 4699999999999999999999999999999999985 4678899999887664211
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHH
Q psy11936 217 LTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGG 296 (548)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 296 (548)
...... ...++++.... ......++.+++..................+.++|+.+|+.....++++.+||||
T Consensus 82 ~~~~~~-------~i~~v~q~~~~-~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G 153 (267)
T PRK15112 82 YSYRSQ-------RIRMIFQDPST-SLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPG 153 (267)
T ss_pred hhhHhc-------cEEEEecCchh-hcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHH
Confidence 111000 01111111000 0001112222221111000001111234567889999999645668889999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
|+|||+|||||+.+|+||||||||++||+.++.+|.++|.++ +.|||+||||++++..+||+|++|++|+++. .|
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~-~~ 232 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVE-RG 232 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEe-cC
Confidence 999999999999999999999999999999999999988764 5799999999999999999999999999985 56
Q ss_pred CHHHHH
Q psy11936 373 NYSMFK 378 (548)
Q Consensus 373 ~y~~f~ 378 (548)
+++++.
T Consensus 233 ~~~~~~ 238 (267)
T PRK15112 233 STADVL 238 (267)
T ss_pred CHHHHh
Confidence 766553
No 107
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-39 Score=325.64 Aligned_cols=218 Identities=23% Similarity=0.350 Sum_probs=165.3
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+++||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+.++.......+..
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~~~--- 76 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARL--LTPQSGTVFLGDKPISMLSSRQLAR--- 76 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCC--cCCCCcEEEECCEEhHHCCHHHHhh---
Confidence 58999999999988999999999999999999999999999999999985 4678899999887653211111110
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHH-HHHHhcC--CCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIY-EELKAIG--ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~-~~l~~~~--~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
...++++.. ......++.+++.... ......+ ......++.++++.+|+.. ..++++.+|||||+|||+
T Consensus 77 ----~i~~~~q~~---~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 77 ----RLALLPQHH---LTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINH-LADRRLTDLSGGQRQRAF 148 (255)
T ss_pred ----heEEecccC---CCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHH-HHcCCcccCCHHHHHHHH
Confidence 111222111 1112234444432110 0000011 1123456788999999964 578999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++. .|+++++
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 225 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMA-QGTPEEV 225 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEE-EcCHHHh
Confidence 999999999999999999999999999999998764 5799999999999999999999999999985 4666554
No 108
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=3.4e-39 Score=322.92 Aligned_cols=217 Identities=24% Similarity=0.348 Sum_probs=164.3
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCC-----CeEEEEeceeeccCc--hh
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPP-----NIDILYCEQEVVADD--LT 218 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~-----~g~I~~~~q~i~~~~--~~ 218 (548)
+|+++||+++|++..+|+|+||+|.+|+++||+|+|||||||||++|+|.. .|. +|+|.+.++++.... ..
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMN--DLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred CEEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccC--CCCcCCCCceEEEECCEEccccccchH
Confidence 378999999999888999999999999999999999999999999999853 444 899999888664211 11
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHh-cCCCChHHHHHHHHHhCCCCh---hhhhcccCCCC
Q psy11936 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA-IGADSAEPRARRILAGLGFSR---AMQDRATKNFS 294 (548)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LS 294 (548)
.+. ....++++.. . .+..++.+++.... .+.. ........++..+++.+|+.. ...++++.+||
T Consensus 79 ~~~-------~~i~~v~q~~---~-~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 146 (247)
T TIGR00972 79 ELR-------RRVGMVFQKP---N-PFPMSIYDNIAYGP-RLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLS 146 (247)
T ss_pred HHH-------hheEEEecCc---c-cCCCCHHHHHHhHH-HhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCC
Confidence 111 1111111111 1 11244444443211 1111 011123456788999999972 35688999999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~--~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
|||+|||+|||||+.+|++|||||||++||+.++..+.++|.++. .|||+||||++++..+||+|++|++|+++.. |
T Consensus 147 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~-~ 225 (247)
T TIGR00972 147 GGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEY-G 225 (247)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEe-C
Confidence 999999999999999999999999999999999999999998753 7999999999999999999999999999865 5
Q ss_pred CHHHH
Q psy11936 373 NYSMF 377 (548)
Q Consensus 373 ~y~~f 377 (548)
+.+++
T Consensus 226 ~~~~~ 230 (247)
T TIGR00972 226 PTEQI 230 (247)
T ss_pred CHHHH
Confidence 55544
No 109
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=2.5e-39 Score=318.22 Aligned_cols=211 Identities=23% Similarity=0.359 Sum_probs=158.0
Q ss_pred EEEEeEEEEeCC----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 147 IKVENFSISAKG----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 147 I~l~nls~~y~~----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
|+++||+++|++ ..+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++..........
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL--DNPTSGEVLFNGQSLSKLSSNERAK 79 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEEhhhcCHhHHHH
Confidence 789999999964 4699999999999999999999999999999999985 4678999999887664322111100
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
.. .....++.+.. ......++.+++.... .+..........++.++++.+|+.. ..++++.+|||||+|||+
T Consensus 80 ~~---~~~i~~v~q~~---~~~~~~tv~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~ 151 (221)
T TIGR02211 80 LR---NKKLGFIYQFH---HLLPDFTALENVAMPL-LIGKKSVKEAKERAYEMLEKVGLEH-RINHRPSELSGGERQRVA 151 (221)
T ss_pred HH---HhcEEEEeccc---ccCCCCcHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHH
Confidence 00 00111122111 1112345555443211 1111111123456788999999974 578999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLY 368 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~ 368 (548)
|||||+.+|+||||||||++||+.++..+.++|..+ +.|||+||||++++.. ||+|++|++|+++
T Consensus 152 laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 152 IARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence 999999999999999999999999999999998754 5799999999999965 8999999999875
No 110
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=3.5e-39 Score=325.05 Aligned_cols=225 Identities=21% Similarity=0.300 Sum_probs=163.6
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEecee-----eccCchhHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQE-----VVADDLTAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~-----i~~~~~~~~ 220 (548)
+|+++||+++|+++.+|+++||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+.+ +........
T Consensus 6 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSAR--LAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCEEEECCccccccccccCCHHHH
Confidence 58999999999888899999999999999999999999999999999985 46788999998876 432111111
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqR 300 (548)
.... .....++++... .......+..+++......+..........++.++++.+|+.....++.+.+|||||+||
T Consensus 84 ~~~~---~~~i~~v~q~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qr 159 (258)
T PRK11701 84 RRLL---RTEWGFVHQHPR-DGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQR 159 (258)
T ss_pred HHHh---hcceEEEeeCcc-cccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHH
Confidence 0000 000111111110 000111222233221110010000112345678899999997446789999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
|+|||||+.+|+||||||||++||+.+..++.++|..+ +.|||+||||++++..+||+|++|++|+++.. |+.++
T Consensus 160 l~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~-~~~~~ 238 (258)
T PRK11701 160 LQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVES-GLTDQ 238 (258)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe-CCHHH
Confidence 99999999999999999999999999999999988653 67999999999999999999999999999864 55544
Q ss_pred H
Q psy11936 377 F 377 (548)
Q Consensus 377 f 377 (548)
+
T Consensus 239 ~ 239 (258)
T PRK11701 239 V 239 (258)
T ss_pred H
Confidence 3
No 111
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-39 Score=328.17 Aligned_cols=219 Identities=23% Similarity=0.330 Sum_probs=164.7
Q ss_pred cEEEEeEEEEeCC-----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc----
Q psy11936 146 DIKVENFSISAKG-----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD---- 216 (548)
Q Consensus 146 ~I~l~nls~~y~~-----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~---- 216 (548)
.|+++||+++|++ .++|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++++....
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl--~~p~~G~i~~~g~~i~~~~~~~~ 79 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGL--HVPTQGSVRVDDTLITSTSKNKD 79 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEEccccccccC
Confidence 4889999999975 3699999999999999999999999999999999985 4678999999887664211
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHH
Q psy11936 217 LTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGG 296 (548)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 296 (548)
...+.. ...++.+... ...+..++.+++.... ............++.++|+.+|+.....++++.+||||
T Consensus 80 ~~~~~~-------~i~~~~q~~~--~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 149 (280)
T PRK13649 80 IKQIRK-------KVGLVFQFPE--SQLFEETVLKDVAFGP-QNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGG 149 (280)
T ss_pred HHHHHh-------heEEEeeChh--hhhccccHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHH
Confidence 111111 1111111110 0112234444442111 11111111234467788999999754568999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCC
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~ 373 (548)
|||||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.+ |+
T Consensus 150 ~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~-g~ 228 (280)
T PRK13649 150 QMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLS-GK 228 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEe-CC
Confidence 999999999999999999999999999999999999998765 57999999999999999999999999999865 55
Q ss_pred HHHH
Q psy11936 374 YSMF 377 (548)
Q Consensus 374 y~~f 377 (548)
.+++
T Consensus 229 ~~~~ 232 (280)
T PRK13649 229 PKDI 232 (280)
T ss_pred HHHH
Confidence 5543
No 112
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-39 Score=322.48 Aligned_cols=218 Identities=24% Similarity=0.355 Sum_probs=165.9
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++........ .
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~---~- 76 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGI--VPRDAGNIIIDDEDISLLPLHAR---A- 76 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEECCCCCHHHH---H-
Confidence 58999999999988999999999999999999999999999999999985 46788999998876643221110 0
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHH-hcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELK-AIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
.....++++.. ......++.+++.... .+. .........++.++++.+|+.. ..++++.+|||||+|||+||
T Consensus 77 --~~~i~~~~q~~---~~~~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la 149 (241)
T PRK10895 77 --RRGIGYLPQEA---SIFRRLSVYDNLMAVL-QIRDDLSAEQREDRANELMEEFHIEH-LRDSMGQSLSGGERRRVEIA 149 (241)
T ss_pred --HhCeEEeccCC---cccccCcHHHHHhhhh-hcccccCHHHHHHHHHHHHHHcCCHH-HhhcchhhCCHHHHHHHHHH
Confidence 00111121111 1112234444443211 111 0111223456788999999974 56889999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|||+.+|++|||||||++||+.++.++.++|..+ +.|||+||||++++..+||+|++|++|+++. .|+++++
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~ 224 (241)
T PRK10895 150 RALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIA-HGTPTEI 224 (241)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEe-eCCHHHH
Confidence 9999999999999999999999999888877653 6799999999999999999999999999986 4776655
No 113
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-39 Score=323.48 Aligned_cols=220 Identities=21% Similarity=0.290 Sum_probs=166.6
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC---CCCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV---PPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~---~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
.|+++||+++|++..+|+|+||+|.+|+++||+|+|||||||||++|+|...+. |.+|+|.+.+.++.......+..
T Consensus 3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRR 82 (250)
T ss_pred eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhc
Confidence 589999999999888999999999999999999999999999999999963221 46899999988764222111111
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhc--CCCChHHHHHHHHHhCCCCh---hhhhcccCCCCHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI--GADSAEPRARRILAGLGFSR---AMQDRATKNFSGGW 297 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~--~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGq 297 (548)
...++++.. ...+..++.+++.... ..... ........+.++++.+|+.. ...++++.+|||||
T Consensus 83 -------~i~~v~q~~---~~~~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~ 151 (250)
T PRK14247 83 -------RVQMVFQIP---NPIPNLSIFENVALGL-KLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQ 151 (250)
T ss_pred -------cEEEEeccC---ccCCCCcHHHHHHHHH-HhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHH
Confidence 111122111 1123345555543211 11111 01122456788999999853 34688999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHH
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~ 375 (548)
+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+
T Consensus 152 ~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~-g~~~ 230 (250)
T PRK14247 152 QQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEW-GPTR 230 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEE-CCHH
Confidence 99999999999999999999999999999999999999875 47999999999999999999999999999864 6655
Q ss_pred HH
Q psy11936 376 MF 377 (548)
Q Consensus 376 ~f 377 (548)
++
T Consensus 231 ~~ 232 (250)
T PRK14247 231 EV 232 (250)
T ss_pred HH
Confidence 54
No 114
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-39 Score=321.95 Aligned_cols=217 Identities=22% Similarity=0.297 Sum_probs=164.5
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCC-CCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK-VPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~-~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
+|+++||++.|+++.+|+|+||+|.+|+++||+|+||||||||+++|+|...+ .|.+|+|.+.++++...+...+..
T Consensus 2 ~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~-- 79 (246)
T PRK14269 2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK-- 79 (246)
T ss_pred ceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh--
Confidence 58899999999988899999999999999999999999999999999995321 367899999988764322111111
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhc--CCCChHHHHHHHHHhCCCCh---hhhhcccCCCCHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI--GADSAEPRARRILAGLGFSR---AMQDRATKNFSGGWRM 299 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~--~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGqkq 299 (548)
...++++.. ..+..++.+++.... .+... .......++..+++.+|+.. ...++.+.+|||||+|
T Consensus 80 -----~i~~~~q~~----~l~~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 149 (246)
T PRK14269 80 -----NVGMVFQQP----NVFVKSIYENISYAP-KLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQ 149 (246)
T ss_pred -----hEEEEecCC----ccccccHHHHhhhHH-hhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHH
Confidence 111222111 112234444442111 11110 01123446778999999953 3457888999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 300 RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 300 RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++..+...
T Consensus 150 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 226 (246)
T PRK14269 150 RLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESK 226 (246)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999764 679999999999999999999999999999764433
No 115
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-39 Score=335.64 Aligned_cols=226 Identities=19% Similarity=0.208 Sum_probs=164.5
Q ss_pred cEEEEeEEEEe----CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCC--CCCCeEEEEeceeeccCchhH
Q psy11936 146 DIKVENFSISA----KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK--VPPNIDILYCEQEVVADDLTA 219 (548)
Q Consensus 146 ~I~l~nls~~y----~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~--~~~~g~I~~~~q~i~~~~~~~ 219 (548)
+|+++||+++| +...+|+||||+|.+|+++||+|+||||||||+++|+|...+ .+.+|+|.|.++++.......
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 58999999999 345799999999999999999999999999999999996321 257899999998764332221
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC-----CChHHHHHHHHHhCCCCh--hhhhcccCC
Q psy11936 220 VESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA-----DSAEPRARRILAGLGFSR--AMQDRATKN 292 (548)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-----~~~~~~~~~~L~~lgl~~--~~~~~~~~~ 292 (548)
...... ....++++.... ......++.+++..........+. .....++.++|+.+||.. ...++++.+
T Consensus 83 ~~~~~~---~~i~~v~Q~~~~-~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~ 158 (330)
T PRK15093 83 RRKLVG---HNVSMIFQEPQS-CLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYE 158 (330)
T ss_pred HHHHhC---CCEEEEecCcch-hcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchh
Confidence 111000 011122221100 011122333333221110000010 123457889999999974 346889999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLY 368 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~ 368 (548)
|||||+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||+.++..+||+|++|++|+|+
T Consensus 159 LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~iv 238 (330)
T PRK15093 159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTV 238 (330)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999988764 679999999999999999999999999998
Q ss_pred EEcCCHHH
Q psy11936 369 YYKGNYSM 376 (548)
Q Consensus 369 ~~~g~y~~ 376 (548)
+. |+.++
T Consensus 239 e~-g~~~~ 245 (330)
T PRK15093 239 ET-APSKE 245 (330)
T ss_pred EE-CCHHH
Confidence 76 55433
No 116
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-39 Score=334.80 Aligned_cols=222 Identities=20% Similarity=0.269 Sum_probs=165.1
Q ss_pred cEEEEeEEEEeCC-----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc----
Q psy11936 146 DIKVENFSISAKG-----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD---- 216 (548)
Q Consensus 146 ~I~l~nls~~y~~-----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~---- 216 (548)
+|+++||+++|++ ..+|+|+||+|.+|+++||+|+||||||||+++|+|. ..|.+|+|.+.+..+...-
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl--~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL--IKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCeEEECCEEccccccccc
Confidence 5999999999974 3599999999999999999999999999999999985 4688999999887653210
Q ss_pred ---------hhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhh
Q psy11936 217 ---------LTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQD 287 (548)
Q Consensus 217 ---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~ 287 (548)
...... ......++.+.. ....+..++.+++..... ...........++.++++.+|+.....+
T Consensus 99 ~~~~~~~~~~~~~~~----~~~~ig~v~Q~~--~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 171 (320)
T PRK13631 99 LITNPYSKKIKNFKE----LRRRVSMVFQFP--EYQLFKDTIEKDIMFGPV-ALGVKKSEAKKLAKFYLNKMGLDDSYLE 171 (320)
T ss_pred ccccccccccchHHH----HHhcEEEEEECc--hhccccchHHHHHHhhHH-hcCCCHHHHHHHHHHHHHHcCCChhHhc
Confidence 000000 001111111111 001222344444321100 0011112234567889999999745678
Q ss_pred cccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeC
Q psy11936 288 RATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQ 364 (548)
Q Consensus 288 ~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~ 364 (548)
+.+.+|||||+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++
T Consensus 172 ~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~ 251 (320)
T PRK13631 172 RSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDK 251 (320)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999998754 57999999999999999999999999
Q ss_pred CEEEEEcCCHHHH
Q psy11936 365 QKLYYYKGNYSMF 377 (548)
Q Consensus 365 G~i~~~~g~y~~f 377 (548)
|+++.. |+.+++
T Consensus 252 G~i~~~-g~~~~~ 263 (320)
T PRK13631 252 GKILKT-GTPYEI 263 (320)
T ss_pred CEEEEe-CCHHHH
Confidence 999875 555544
No 117
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=4.4e-39 Score=318.06 Aligned_cols=213 Identities=23% Similarity=0.309 Sum_probs=159.4
Q ss_pred cEEEEeEEEEeCC----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 146 DIKVENFSISAKG----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~~----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
+|+++||+++|++ ..+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|.|.+.++.+...+.....
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl--~~p~~G~i~~~g~~~~~~~~~~~~ 83 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGL--DDGSSGEVSLVGQPLHQMDEEARA 83 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcC--CCCCCeeEEECCEEcccCCHHHHH
Confidence 5899999999975 3599999999999999999999999999999999985 467899999988766432211110
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
... .....++++.. ......++.+++.... .+..........++.++|+.+|+. ...++++.+|||||+|||
T Consensus 84 ~~~---~~~i~~~~q~~---~l~~~~tv~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Ge~qrl 155 (228)
T PRK10584 84 KLR---AKHVGFVFQSF---MLIPTLNALENVELPA-LLRGESSRQSRNGAKALLEQLGLG-KRLDHLPAQLSGGEQQRV 155 (228)
T ss_pred HHH---hheEEEEEccc---ccCCCcCHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCH-hHhhCChhhCCHHHHHHH
Confidence 000 00111111111 1112234445443211 111111122345788999999997 456889999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++.. ||++++|++|+++.
T Consensus 156 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~l~~g~i~~ 226 (228)
T PRK10584 156 ALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEECCEEEe
Confidence 9999999999999999999999999999999998654 5799999999999865 99999999999864
No 118
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-39 Score=326.53 Aligned_cols=201 Identities=25% Similarity=0.316 Sum_probs=158.5
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
..|+++||+++|+++.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+..+. .+.
T Consensus 11 ~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl--~~p~~G~i~~~g~~~~-----~~~--- 80 (257)
T PRK11247 11 TPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGL--ETPSAGELLAGTAPLA-----EAR--- 80 (257)
T ss_pred CcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCeEEEECCEEHH-----Hhh---
Confidence 459999999999988999999999999999999999999999999999985 4678899987665431 000
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
....++.+.. ......++.+++.... ......++.++|+.+|+.. ..++++.+|||||||||+||
T Consensus 81 ----~~i~~v~q~~---~l~~~~tv~enl~~~~-------~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqkqrl~la 145 (257)
T PRK11247 81 ----EDTRLMFQDA---RLLPWKKVIDNVGLGL-------KGQWRDAALQALAAVGLAD-RANEWPAALSGGQKQRVALA 145 (257)
T ss_pred ----CceEEEecCc---cCCCCCcHHHHHHhcc-------cchHHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHH
Confidence 0011111110 1111234444432110 0113456788999999974 56889999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++..
T Consensus 146 raL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~ 215 (257)
T PRK11247 146 RALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLD 215 (257)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 9999999999999999999999999999888654 57999999999999999999999999999864
No 119
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=4.2e-39 Score=320.17 Aligned_cols=215 Identities=23% Similarity=0.342 Sum_probs=163.0
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|.|.+.+.++........
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~p~~G~i~~~g~~i~~~~~~~~----- 73 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRL--YVAQEGQISVAGHDLRRAPRAAL----- 73 (236)
T ss_pred CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--cCCCceEEEECCEEcccCChhhh-----
Confidence 37899999999988999999999999999999999999999999999985 46788999998876532111100
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
....++.+. ....+..++.+++.... .............+.++++.+|+.. ..++.+.+|||||+|||+|||
T Consensus 74 ---~~i~~~~q~---~~~~~~~t~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrl~lar 145 (236)
T TIGR03864 74 ---ARLGVVFQQ---PTLDLDLSVRQNLRYHA-ALHGLSRAEARERIAALLARLGLAE-RADDKVRELNGGHRRRVEIAR 145 (236)
T ss_pred ---hhEEEeCCC---CCCcccCcHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCChh-hhcCChhhCCHHHHHHHHHHH
Confidence 011111111 01112334444432211 1111111123456788999999974 568899999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++.. ||+|++|++|+++.. |+.+.+
T Consensus 146 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~-~~~~~~ 219 (236)
T TIGR03864 146 ALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLAD-GAAAEL 219 (236)
T ss_pred HHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEEe-CCHHHH
Confidence 999999999999999999999999999988764 5799999999999975 999999999999864 665544
No 120
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=3.6e-39 Score=317.03 Aligned_cols=214 Identities=22% Similarity=0.271 Sum_probs=162.8
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++||+++|++.++|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++.+...+.....
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~~----- 73 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGL--LPPRSGSIRFDGRDITGLPPHERA----- 73 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEEcCCCCHHHHH-----
Confidence 4689999999988899999999999999999999999999999999985 467889999988766432211100
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhC-CCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGL-GFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~l-gl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
.....++++.. ..+...++.+++..... .........++..+++.+ ++. ...++++.+|||||+|||+|||
T Consensus 74 -~~~i~~~~q~~---~~~~~~t~~~~l~~~~~---~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LS~G~~qrv~lar 145 (222)
T cd03224 74 -RAGIGYVPEGR---RIFPELTVEENLLLGAY---ARRRAKRKARLERVYELFPRLK-ERRKQLAGTLSGGEQQMLAIAR 145 (222)
T ss_pred -hcCeEEecccc---ccCCCCcHHHHHHHHhh---hcCchhHHHHHHHHHHHHHhhh-hhhhCchhhCCHHHHHHHHHHH
Confidence 00112222211 11223355554432111 111122344567788888 465 4568899999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
||+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+.
T Consensus 146 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~-~~~~~ 218 (222)
T cd03224 146 ALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLE-GTAAE 218 (222)
T ss_pred HHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEe-CCHHH
Confidence 999999999999999999999999999999765 47999999999999999999999999999854 55544
No 121
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=3e-39 Score=333.12 Aligned_cols=208 Identities=25% Similarity=0.404 Sum_probs=161.1
Q ss_pred EEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHH
Q psy11936 154 ISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTEL 233 (548)
Q Consensus 154 ~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l 233 (548)
++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++.... ..+. ...++
T Consensus 1 k~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~-~~~~-------~~i~~ 70 (302)
T TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTL--LRPTSGTARVAGYDVVREP-RKVR-------RSIGI 70 (302)
T ss_pred CeeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEEcccCH-HHHH-------hhcEE
Confidence 468888899999999999999999999999999999999985 4688999999987764211 1111 11122
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCE
Q psy11936 234 LAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTL 313 (548)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~l 313 (548)
+++. .......++.+++... ..+..........++.++|+.+|+.. ..++++.+|||||||||+||+||+.+|++
T Consensus 71 ~~q~---~~~~~~~tv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~~p~l 145 (302)
T TIGR01188 71 VPQY---ASVDEDLTGRENLEMM-GRLYGLPKDEAEERAEELLELFELGE-AADRPVGTYSGGMRRRLDIAASLIHQPDV 145 (302)
T ss_pred ecCC---CCCCCCCcHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHcCChh-HhCCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 2221 1122334555555321 11111111223456889999999974 57899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 314 LLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 314 LLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+.+
T Consensus 146 llLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~-g~~~~l 211 (302)
T TIGR01188 146 LFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAE-GTPEEL 211 (302)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE-CCHHHH
Confidence 9999999999999999999999875 47999999999999999999999999999864 676654
No 122
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=4e-39 Score=323.40 Aligned_cols=222 Identities=21% Similarity=0.294 Sum_probs=165.1
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc--------hh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD--------LT 218 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~--------~~ 218 (548)
|+++||++.|++..+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++.+.... ..
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTL--EPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEEccccccccccccccc
Confidence 4689999999988999999999999999999999999999999999985 4678999999887663211 00
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHH
Q psy11936 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWR 298 (548)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqk 298 (548)
... . ........++.+. ....+..++.+++..................+.++++.+|+.. ..++.+.+|||||+
T Consensus 79 ~~~-~-~~~~~~i~~v~q~---~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~ 152 (252)
T TIGR03005 79 EKH-L-RQMRNKIGMVFQS---FNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLAD-KADHMPAQLSGGQQ 152 (252)
T ss_pred hhH-H-HHHhhCeEEEecC---cccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-HhhcChhhcCHHHH
Confidence 000 0 0000011111111 1112234555544321110011111123456788999999974 67889999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
|||+|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||++++|++|+++.. |++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~-g~~ 231 (252)
T TIGR03005 153 QRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQ-GKP 231 (252)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe-CCH
Confidence 9999999999999999999999999999999999988754 57999999999999999999999999999854 666
Q ss_pred HHH
Q psy11936 375 SMF 377 (548)
Q Consensus 375 ~~f 377 (548)
+.+
T Consensus 232 ~~~ 234 (252)
T TIGR03005 232 DEI 234 (252)
T ss_pred HHH
Confidence 655
No 123
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-39 Score=328.43 Aligned_cols=227 Identities=22% Similarity=0.324 Sum_probs=170.8
Q ss_pred EEEEeEEEEeCC----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCC----CCeEEEEeceeeccCchh
Q psy11936 147 IKVENFSISAKG----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVP----PNIDILYCEQEVVADDLT 218 (548)
Q Consensus 147 I~l~nls~~y~~----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~----~~g~I~~~~q~i~~~~~~ 218 (548)
|+++||+.+|.. ..+++||||+|.+||++||||.||||||||.+.|+|+ ++.+ .+|+|.|.++++...+..
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~l-lp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGL-LPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhc-cCCCCCeEeeeEEEECCcccccCCHH
Confidence 789999999953 3689999999999999999999999999999999985 3322 357899999887554432
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhc-CCCChHHHHHHHHHhCCCChh--hhhcccCCCCH
Q psy11936 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI-GADSAEPRARRILAGLGFSRA--MQDRATKNFSG 295 (548)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~~~~~~L~~lgl~~~--~~~~~~~~LSG 295 (548)
....+.+ ....+++|... ..+.+..+...++.+.+...... ...++..++.++|+.+||++. .++.+|++|||
T Consensus 81 ~~~~iRG---~~I~mIfQ~p~-~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSG 156 (316)
T COG0444 81 ELRKIRG---KEIAMIFQDPM-TSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSG 156 (316)
T ss_pred HHHhhcC---ceEEEEEcCch-hhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCC
Confidence 2111111 11122222211 11122334444444433321111 223456789999999999854 78999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG----WKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~----~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
||+|||+||.||+.+|+|||.||||++||...+..+.++|++ .+.|+|+||||+..+..+||||+||..|+|++++
T Consensus 157 GMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g 236 (316)
T COG0444 157 GMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEG 236 (316)
T ss_pred cHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeC
Confidence 999999999999999999999999999999999888888865 4689999999999999999999999999999986
Q ss_pred CCHHHHH
Q psy11936 372 GNYSMFK 378 (548)
Q Consensus 372 g~y~~f~ 378 (548)
...+.|.
T Consensus 237 ~~~~i~~ 243 (316)
T COG0444 237 PVEEIFK 243 (316)
T ss_pred CHHHHhc
Confidence 5555553
No 124
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=4.3e-39 Score=320.94 Aligned_cols=218 Identities=20% Similarity=0.298 Sum_probs=166.9
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||++.|+++.+|+++||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+..+..........
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~p~~G~i~~~g~~~~~~~~~~~~~--- 76 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGK--TRPDEGSVLFGGTDLTGLPEHQIAR--- 76 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCCeEEECCeecCCCCHHHHHh---
Confidence 48899999999888899999999999999999999999999999999985 3678899999887653222111000
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHh-----c---CCCChHHHHHHHHHhCCCChhhhhcccCCCCHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA-----I---GADSAEPRARRILAGLGFSRAMQDRATKNFSGGW 297 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-----~---~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 297 (548)
....+.++. .......++.+++..... ... + .......++.++++.+|+.. ..++++.+|||||
T Consensus 77 ---~~i~~~~q~---~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~Ge 148 (242)
T TIGR03411 77 ---AGIGRKFQK---PTVFENLTVFENLELALP-RDKSVFASLFFRLSAEEKDRIEEVLETIGLAD-EADRLAGLLSHGQ 148 (242)
T ss_pred ---cCeeEeccc---cccCCCCCHHHHHHHhhh-cccccccccccccHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHH
Confidence 011122211 111223355554432111 000 0 00123456788999999974 5688999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHH
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~ 375 (548)
+|||+|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+
T Consensus 149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~-~~~~ 227 (242)
T TIGR03411 149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAE-GSLD 227 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEee-CCHH
Confidence 99999999999999999999999999999999999999876 36999999999999999999999999999854 6766
Q ss_pred HH
Q psy11936 376 MF 377 (548)
Q Consensus 376 ~f 377 (548)
++
T Consensus 228 ~~ 229 (242)
T TIGR03411 228 QV 229 (242)
T ss_pred HH
Confidence 65
No 125
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-39 Score=321.26 Aligned_cols=223 Identities=20% Similarity=0.282 Sum_probs=165.4
Q ss_pred cccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCC--C-CCCCeEEEEeceeeccCchhHH
Q psy11936 144 AVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDL--K-VPPNIDILYCEQEVVADDLTAV 220 (548)
Q Consensus 144 ~~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~--~-~~~~g~I~~~~q~i~~~~~~~~ 220 (548)
+..|+++||+++|+++.+|+++||+|.+|+++||+|+|||||||||++|+|..- + .|.+|+|.+.++++.......
T Consensus 4 ~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~- 82 (253)
T PRK14242 4 PPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV- 82 (253)
T ss_pred CcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH-
Confidence 346999999999988889999999999999999999999999999999999531 1 146899999888764211100
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC-CChHHHHHHHHHhCCCCh---hhhhcccCCCCHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA-DSAEPRARRILAGLGFSR---AMQDRATKNFSGG 296 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGG 296 (548)
... .....++.+.. ..+..++.+++.... ....... .....++..+++.+|+.. ...++++.+||||
T Consensus 83 ~~~----~~~i~~v~q~~----~~~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 153 (253)
T PRK14242 83 VEL----RRRVGMVFQKP----NPFPKSIFENVAYGL-RVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGG 153 (253)
T ss_pred HHH----hhcEEEEecCC----CCCcCcHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHH
Confidence 000 00111111111 112234445443211 1111111 112456788899999853 2457889999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
|+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.
T Consensus 154 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~-g~~ 232 (253)
T PRK14242 154 QQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEV-GPT 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEe-CCH
Confidence 999999999999999999999999999999999999999876 36999999999999999999999999999865 555
Q ss_pred HHH
Q psy11936 375 SMF 377 (548)
Q Consensus 375 ~~f 377 (548)
+++
T Consensus 233 ~~~ 235 (253)
T PRK14242 233 EQI 235 (253)
T ss_pred HHH
Confidence 544
No 126
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.4e-39 Score=325.49 Aligned_cols=219 Identities=24% Similarity=0.396 Sum_probs=165.9
Q ss_pred cEEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
+|+++||+++|+ +..+|+|+||+|.+|+++||+|+||||||||+++|+|. ..|.+|+|.+.++.+.......+...
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~~~- 79 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGI--LKPTSGSVLIRGEPITKENIREVRKF- 79 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEECCcCCHHHHHhh-
Confidence 488999999995 45799999999999999999999999999999999985 46889999998887643221111111
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
..++.+... ...+..++.+++.... ............++.++++.+|+. ...++.+.+|||||+|||+||
T Consensus 80 ------i~~v~q~~~--~~~~~~tv~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrl~la 149 (277)
T PRK13652 80 ------VGLVFQNPD--DQIFSPTVEQDIAFGP-INLGLDEETVAHRVSSALHMLGLE-ELRDRVPHHLSGGEKKRVAIA 149 (277)
T ss_pred ------eEEEecCcc--cccccccHHHHHHhHH-HHcCCCHHHHHHHHHHHHHHCCCh-hHhcCCcccCCHHHHHHHHHH
Confidence 111111100 0112234444442111 000111112335678899999997 467899999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~ 378 (548)
|||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+++.
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~-g~~~~~~ 226 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAY-GTVEEIF 226 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEE-CCHHHHh
Confidence 9999999999999999999999999999988754 57999999999999999999999999999864 7766653
No 127
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-39 Score=302.50 Aligned_cols=229 Identities=25% Similarity=0.321 Sum_probs=172.8
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc---hh--HH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD---LT--AV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~---~~--~~ 220 (548)
.|+++||.++||...+|++|||+-..|+++.|||.||||||||||||. .+..|..|.|...++++.... .. ..
T Consensus 6 ~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN--~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 6 ALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCIN--FLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred ceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHH--hhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 488999999999999999999999999999999999999999999998 356899999999998874211 00 00
Q ss_pred -HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHH
Q psy11936 221 -ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRM 299 (548)
Q Consensus 221 -~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkq 299 (548)
...+.....+.++.++. .+....+++.+++.+.--..-.....++.++++.+|..+|+.+ ..+.+|..|||||+|
T Consensus 84 d~~q~~r~Rs~L~mVFQ~---FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~e-k~~~YP~~LSGGQQQ 159 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQH---FNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAE-KADAYPAHLSGGQQQ 159 (256)
T ss_pred CHHHHHHHHHHhhHhhhh---cchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchh-hhhcCccccCchHHH
Confidence 00000111111222221 1122234444444332111222334456778999999999985 567999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 300 RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 300 RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
|++|||||+.+|+++|+|||||+|||+-+-.+...++++ +.|+++|||.+.|+..++++|++|++|.|-+.+.+-..
T Consensus 160 R~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qv 239 (256)
T COG4598 160 RVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQV 239 (256)
T ss_pred HHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHH
Confidence 999999999999999999999999999888877777654 78999999999999999999999999999876555555
Q ss_pred HHHH
Q psy11936 377 FKKM 380 (548)
Q Consensus 377 f~~~ 380 (548)
|-+.
T Consensus 240 f~nP 243 (256)
T COG4598 240 FGNP 243 (256)
T ss_pred hcCC
Confidence 5443
No 128
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=1.2e-38 Score=304.53 Aligned_cols=174 Identities=34% Similarity=0.536 Sum_probs=146.2
Q ss_pred EEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhh
Q psy11936 148 KVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKAD 227 (548)
Q Consensus 148 ~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~ 227 (548)
+++||+++|++..+|+++||+|.+|++++|+|+|||||||||++|+|. ..|.+|+|.+.+.++.......+.
T Consensus 1 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~--~~~~~G~v~~~g~~~~~~~~~~~~------ 72 (180)
T cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGL--LKPSSGEILLDGKDLASLSPKELA------ 72 (180)
T ss_pred CeeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEECCcCCHHHHH------
Confidence 368999999888899999999999999999999999999999999985 467889999988766422211100
Q ss_pred HHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHH
Q psy11936 228 VKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARAL 307 (548)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL 307 (548)
....+++ .+++.+|+.. ..++.+.+|||||+||++|||||
T Consensus 73 -~~i~~~~--------------------------------------q~l~~~gl~~-~~~~~~~~LS~G~~qrl~laral 112 (180)
T cd03214 73 -RKIAYVP--------------------------------------QALELLGLAH-LADRPFNELSGGERQRVLLARAL 112 (180)
T ss_pred -HHHhHHH--------------------------------------HHHHHcCCHh-HhcCCcccCCHHHHHHHHHHHHH
Confidence 0000000 0677788874 56788999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 308 YIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 308 ~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||++++|++|+++.
T Consensus 113 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 178 (180)
T cd03214 113 AQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVA 178 (180)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999998765 5699999999999999999999999999874
No 129
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-39 Score=323.25 Aligned_cols=217 Identities=24% Similarity=0.350 Sum_probs=164.6
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+.++.......+.
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~p~~G~i~~~g~~~~~~~~~~~~---- 75 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGE--LSPDSGEVRLNGRPLADWSPAELA---- 75 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCEEEECCEEcccCCHHHhh----
Confidence 48899999999988899999999999999999999999999999999985 467889999988765322111110
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
....++.+. ....+..++.+++..... ...........++.++|+.+||. ...++.+.+|||||+|||+|||
T Consensus 76 ---~~i~~~~q~---~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGe~qrv~la~ 147 (258)
T PRK13548 76 ---RRRAVLPQH---SSLSFPFTVEEVVAMGRA-PHGLSRAEDDALVAAALAQVDLA-HLAGRDYPQLSGGEQQRVQLAR 147 (258)
T ss_pred ---hheEEEccC---CcCCCCCCHHHHHHhhhc-ccCCCcHHHHHHHHHHHHHcCCH-hHhcCCcccCCHHHHHHHHHHH
Confidence 011122211 111123345444422110 00001112345678899999997 4578999999999999999999
Q ss_pred HHc------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHH
Q psy11936 306 ALY------IEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 306 aL~------~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~ 375 (548)
||+ .+|++|||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++. .|+.+
T Consensus 148 al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~ 226 (258)
T PRK13548 148 VLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVA-DGTPA 226 (258)
T ss_pred HHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEe-eCCHH
Confidence 999 599999999999999999999988888754 4799999999999999999999999999985 46665
Q ss_pred HH
Q psy11936 376 MF 377 (548)
Q Consensus 376 ~f 377 (548)
++
T Consensus 227 ~~ 228 (258)
T PRK13548 227 EV 228 (258)
T ss_pred HH
Confidence 54
No 130
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.9e-39 Score=326.67 Aligned_cols=219 Identities=23% Similarity=0.331 Sum_probs=166.3
Q ss_pred cEEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCch--hHHHH
Q psy11936 146 DIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDL--TAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~--~~~~~ 222 (548)
+|+++||+++|+ ++.+|+++||+|.+|+++||+|+||||||||+++|+|. ..|.+|+|.+.+.++..... ..+..
T Consensus 5 ~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl--~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGI--LKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCccEEEECCEECCCCcchHHHHHh
Confidence 589999999996 57899999999999999999999999999999999985 46888999999887632111 11111
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
...++++... ...+..++.+++...... ..........++..+++.+|+. ...++++.+|||||+||++
T Consensus 83 -------~ig~v~q~~~--~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 -------SVGMVFQDPD--NQLFSASVYQDVSFGAVN-LKLPEDEVRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVA 151 (283)
T ss_pred -------hEEEEecCcc--hhhccccHHHHHHhHHHH-cCCCHHHHHHHHHHHHHHCCCh-hhhhCCcccCCHHHHHHHH
Confidence 1111111110 011223444444221100 0111112345678899999997 4679999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~ 378 (548)
|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++. .|+++.+.
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~-~g~~~~~~ 230 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVIL-QGNPKEVF 230 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 999999999999999999999999999888888654 5799999999999999999999999999985 47776653
No 131
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=9.6e-40 Score=319.56 Aligned_cols=203 Identities=27% Similarity=0.401 Sum_probs=153.9
Q ss_pred EEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhH
Q psy11936 149 VENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADV 228 (548)
Q Consensus 149 l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~ 228 (548)
++||+++|+++.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|.|.+.++++. ...
T Consensus 2 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~p~~G~i~~~g~~~~-----~~~------- 67 (213)
T cd03235 2 VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGL--LKPTSGSIRVFGKPLE-----KER------- 67 (213)
T ss_pred cccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC--CCCCCCEEEECCccHH-----HHH-------
Confidence 67999999888899999999999999999999999999999999985 4678899998876542 000
Q ss_pred HHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHh-c--CCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 229 KRTELLAECAKLEAADFSSEQQEQLKEIYEELKA-I--GADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 229 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-~--~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
....++.+...+. ..+..++.+++......... . .......++..+++.+|+. ...++++.+|||||||||+|||
T Consensus 68 ~~i~~v~q~~~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~ 145 (213)
T cd03235 68 KRIGYVPQRRSID-RDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLS-ELADRQIGELSGGQQQRVLLAR 145 (213)
T ss_pred hheEEeccccccc-cCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCH-HHHhCCcccCCHHHHHHHHHHH
Confidence 0111222111100 01123444444221100000 0 0011345678899999997 4678899999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|.+
T Consensus 146 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~~~ 210 (213)
T cd03235 146 ALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210 (213)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCcEe
Confidence 999999999999999999999999999998875 47999999999999999999999988643
No 132
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.5e-39 Score=317.76 Aligned_cols=214 Identities=22% Similarity=0.327 Sum_probs=160.6
Q ss_pred cEEEEeEEEEeCC----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 146 DIKVENFSISAKG----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~~----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
+|+++||+++|++ ..+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++++.........
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~i~~~~~~~~~ 82 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGL--DTPTSGDVIFNGQPMSKLSSAAKA 82 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEEcCcCCHHHHH
Confidence 5899999999964 4799999999999999999999999999999999985 467899999998876432211110
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
.... ....++.+.. ..+...++.+++.... .+..........++.++++.+|+.. ..++.+.+|||||||||
T Consensus 83 ~~~~---~~i~~v~q~~---~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~qrl 154 (233)
T PRK11629 83 ELRN---QKLGFIYQFH---HLLPDFTALENVAMPL-LIGKKKPAEINSRALEMLAAVGLEH-RANHRPSELSGGERQRV 154 (233)
T ss_pred HHHh---ccEEEEecCc---ccCCCCCHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHH
Confidence 0000 0111111111 1122335555543211 1111111223456889999999974 56888999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+ +++++|++|+++..
T Consensus 155 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~~G~i~~~ 226 (233)
T PRK11629 155 AIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLTAE 226 (233)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEECCEEEEE
Confidence 9999999999999999999999999999999998764 57999999999999874 69999999999753
No 133
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1e-38 Score=320.38 Aligned_cols=225 Identities=21% Similarity=0.305 Sum_probs=162.4
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEecee-----eccCchhHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQE-----VVADDLTAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~-----i~~~~~~~~ 220 (548)
+|+++||+++|++..+|+|+||+|.+|++++|+|+|||||||||++|+|. ..|.+|+|.+.+.+ +........
T Consensus 3 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGR--LAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEEecccccccccccCCHHHH
Confidence 58999999999888899999999999999999999999999999999985 46788999988754 321111100
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqR 300 (548)
..... ....++.+.... ......+..+++......+...........+.++++.+|+.....++.+..|||||+||
T Consensus 81 ~~~~~---~~i~~~~q~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qr 156 (253)
T TIGR02323 81 RRLMR---TEWGFVHQNPRD-GLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQR 156 (253)
T ss_pred HHhhh---cceEEEEeCccc-ccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHH
Confidence 00000 001111111000 00111122222221110010000012345778899999997446788999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
|+|||||+.+|++|||||||+|||+.++.++.++|.++ +.|||+||||++++..+||++++|++|+++.. |+.+.
T Consensus 157 v~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~-~~~~~ 235 (253)
T TIGR02323 157 LQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVES-GLTDQ 235 (253)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEE-CCHHH
Confidence 99999999999999999999999999999999888653 57999999999999999999999999999865 55554
Q ss_pred H
Q psy11936 377 F 377 (548)
Q Consensus 377 f 377 (548)
+
T Consensus 236 ~ 236 (253)
T TIGR02323 236 V 236 (253)
T ss_pred H
Confidence 4
No 134
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=7.1e-39 Score=334.02 Aligned_cols=225 Identities=20% Similarity=0.309 Sum_probs=165.1
Q ss_pred cEEEEeEEEEeC----CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCC---CeEEEEeceeeccCchh
Q psy11936 146 DIKVENFSISAK----GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPP---NIDILYCEQEVVADDLT 218 (548)
Q Consensus 146 ~I~l~nls~~y~----~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~---~g~I~~~~q~i~~~~~~ 218 (548)
+|+++||++.|+ ...+|+||||+|.+|+++||+|+||||||||+++|+|.. .|. +|+|.|.++++......
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~--~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLL--AANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCC--CCCCCCCeEEEECCEECCcCCHH
Confidence 689999999994 246999999999999999999999999999999999853 343 89999999887543322
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh--hhhhcccCCCCHH
Q psy11936 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR--AMQDRATKNFSGG 296 (548)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~--~~~~~~~~~LSGG 296 (548)
.+..... ....++++... .......++.+++.................++.++|+.+||.. ...++++.+||||
T Consensus 90 ~~~~~r~---~~i~~v~Q~~~-~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG 165 (330)
T PRK09473 90 ELNKLRA---EQISMIFQDPM-TSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGG 165 (330)
T ss_pred HHHHHhc---CCEEEEEcCch-hhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHH
Confidence 2111100 01112222110 0111223334433322111111111223457888999999974 2357899999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
|+|||+|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||+.++..+||+|++|++|+|++. |
T Consensus 166 ~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~-g 244 (330)
T PRK09473 166 MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY-G 244 (330)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE-C
Confidence 999999999999999999999999999999999988887654 67999999999999999999999999999976 5
Q ss_pred CHHHH
Q psy11936 373 NYSMF 377 (548)
Q Consensus 373 ~y~~f 377 (548)
+.+++
T Consensus 245 ~~~~i 249 (330)
T PRK09473 245 NARDV 249 (330)
T ss_pred CHHHH
Confidence 55443
No 135
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-38 Score=324.67 Aligned_cols=217 Identities=18% Similarity=0.308 Sum_probs=164.3
Q ss_pred cEEEEeEEEEeCC---ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKG---NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~---~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
+|+++||+++|++ ..+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+..+.......+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGL--LEAESGQIIIDGDLLTEENVWDIRH 81 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCEECCcCcHHHHHh
Confidence 5899999999964 4599999999999999999999999999999999985 4688999999988764322111111
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
...++.+.. ....+..++.+++.... ............++.++|+.+|+. ...++++.+|||||+|||+
T Consensus 82 -------~i~~v~q~~--~~~~~~~tv~eni~~~~-~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qrv~ 150 (279)
T PRK13650 82 -------KIGMVFQNP--DNQFVGATVEDDVAFGL-ENKGIPHEEMKERVNEALELVGMQ-DFKEREPARLSGGQKQRVA 150 (279)
T ss_pred -------hceEEEcCh--HHhcccccHHHHHHhhH-HhCCCCHHHHHHHHHHHHHHCCCH-hHhhCCcccCCHHHHHHHH
Confidence 111221111 01122334444443211 111111122345788999999997 4678999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++. .||+|++|++|+++.. |+.+.+
T Consensus 151 lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l~~G~i~~~-g~~~~~ 227 (279)
T PRK13650 151 IAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVEST-STPREL 227 (279)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEE-CCHHHH
Confidence 999999999999999999999999999999888754 579999999999994 7999999999999864 555543
No 136
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.7e-39 Score=327.56 Aligned_cols=218 Identities=19% Similarity=0.257 Sum_probs=161.1
Q ss_pred cEEEEeEEEEeCCc-----eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccC-----
Q psy11936 146 DIKVENFSISAKGN-----DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVAD----- 215 (548)
Q Consensus 146 ~I~l~nls~~y~~~-----~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~----- 215 (548)
.|+++||+++|+++ .+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+.++...
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGL--IISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEEccccccccc
Confidence 58999999999764 499999999999999999999999999999999985 467889999888765310
Q ss_pred chhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCH
Q psy11936 216 DLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSG 295 (548)
Q Consensus 216 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 295 (548)
....+... ..++.+... ...+..++.+++.... ............++.++++.+++.....++++.+|||
T Consensus 84 ~~~~~~~~-------i~~v~q~~~--~~~~~~tv~enl~~~~-~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~ 153 (289)
T PRK13645 84 EVKRLRKE-------IGLVFQFPE--YQLFQETIEKDIAFGP-VNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSG 153 (289)
T ss_pred cHHHHhcc-------EEEEEeCcc--hhhhhhHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCH
Confidence 00111100 111111100 0011123333332110 0000111112345778899999964567899999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
||+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++..
T Consensus 154 Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~- 232 (289)
T PRK13645 154 GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISI- 232 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe-
Confidence 9999999999999999999999999999999999999888754 57999999999999999999999999999876
Q ss_pred CCHHH
Q psy11936 372 GNYSM 376 (548)
Q Consensus 372 g~y~~ 376 (548)
|+.++
T Consensus 233 g~~~~ 237 (289)
T PRK13645 233 GSPFE 237 (289)
T ss_pred CCHHH
Confidence 44444
No 137
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-38 Score=320.47 Aligned_cols=221 Identities=18% Similarity=0.281 Sum_probs=164.1
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC---CCCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV---PPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~---~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
+|+++||+++|++..+|+|+||+|.+|+++||+|+|||||||||++|+|...+. +.+|+|.+.++.+...... ...
T Consensus 7 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~-~~~ 85 (254)
T PRK14273 7 IIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD-ILE 85 (254)
T ss_pred eEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc-HHH
Confidence 589999999999888999999999999999999999999999999999863221 3589999988765321110 000
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhc-CCCChHHHHHHHHHhCCCC---hhhhhcccCCCCHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI-GADSAEPRARRILAGLGFS---RAMQDRATKNFSGGWR 298 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~~~~~~L~~lgl~---~~~~~~~~~~LSGGqk 298 (548)
. .....++.+.. ..+..++.+++..... .... .......++..+++.+++. ....++++.+||||||
T Consensus 86 ~----~~~i~~v~q~~----~~~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~ 156 (254)
T PRK14273 86 L----RRKIGMVFQTP----NPFLMSIYDNISYGPK-IHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQ 156 (254)
T ss_pred H----hhceEEEeecc----ccccCcHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHH
Confidence 0 00111121111 1122445554432111 1110 0112345677889998874 2346888999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
|||+|||||+.+|+||||||||++||+.++.++.++|..+ +.|||+||||++++..+||+|++|++|+++.. |+.++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~-g~~~~ 235 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEE-SSTDE 235 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHHH
Confidence 9999999999999999999999999999999999999876 37999999999999999999999999999865 55554
Q ss_pred H
Q psy11936 377 F 377 (548)
Q Consensus 377 f 377 (548)
+
T Consensus 236 ~ 236 (254)
T PRK14273 236 L 236 (254)
T ss_pred H
Confidence 3
No 138
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-38 Score=319.68 Aligned_cols=218 Identities=22% Similarity=0.297 Sum_probs=163.4
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCC---CCeEEEEeceeeccCch--hHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVP---PNIDILYCEQEVVADDL--TAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~---~~g~I~~~~q~i~~~~~--~~~ 220 (548)
+|+++||+++|+++.+|+++||+|.+|+++||+|||||||||||++|+|.....| .+|+|.+.++++..... ..+
T Consensus 5 ~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 84 (252)
T PRK14239 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDL 84 (252)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhh
Confidence 5899999999998889999999999999999999999999999999998532234 48999998876632110 011
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHhCCCCh---hhhhcccCCCCHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD-SAEPRARRILAGLGFSR---AMQDRATKNFSGG 296 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~-~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGG 296 (548)
.. ...++++.. ..+..++.+++.... ........ ....++..+++.+++.. ...++.+.+||||
T Consensus 85 ~~-------~i~~v~q~~----~~~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 152 (252)
T PRK14239 85 RK-------EIGMVFQQP----NPFPMSIYENVVYGL-RLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGG 152 (252)
T ss_pred hh-------cEEEEecCC----ccCcCcHHHHHHHHH-HHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHH
Confidence 10 111122111 112234555443211 11111111 12356777899998742 3467889999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
|+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.+ |+.
T Consensus 153 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~-g~~ 231 (252)
T PRK14239 153 QQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEY-NDT 231 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEe-CCH
Confidence 999999999999999999999999999999999999999875 47999999999999999999999999999876 444
Q ss_pred HH
Q psy11936 375 SM 376 (548)
Q Consensus 375 ~~ 376 (548)
++
T Consensus 232 ~~ 233 (252)
T PRK14239 232 KQ 233 (252)
T ss_pred HH
Confidence 43
No 139
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-39 Score=325.21 Aligned_cols=218 Identities=22% Similarity=0.327 Sum_probs=164.3
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+|+||||||||+++|+|. ..|.+|+|.+.+.++.......+.
T Consensus 11 ~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~~---- 84 (265)
T PRK10575 11 TFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRH--QPPSEGEILLDAQPLESWSSKAFA---- 84 (265)
T ss_pred eEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCC--CCCCCCEEEECCEehhhCCHHHHh----
Confidence 58999999999988999999999999999999999999999999999985 467889999988765322111111
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHh-cC--CCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA-IG--ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~--~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
....++.+. ....+..++.+++......... .+ ......++..+|+.+|+. ...++++.+|||||+|||+
T Consensus 85 ---~~i~~v~q~---~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~ 157 (265)
T PRK10575 85 ---RKVAYLPQQ---LPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLK-PLAHRLVDSLSGGERQRAW 157 (265)
T ss_pred ---hheEEeccC---CCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH-HHhcCCcccCCHHHHHHHH
Confidence 011111111 0112233444444211000000 00 112345678899999996 4678999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+++
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~-~~~~~~ 235 (265)
T PRK10575 158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQ-GTPAEL 235 (265)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEe-cCHHHh
Confidence 999999999999999999999999999888888654 57999999999999999999999999999754 554443
No 140
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-39 Score=316.47 Aligned_cols=219 Identities=25% Similarity=0.360 Sum_probs=174.7
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
++++++|+++||+-.+++||||++.+|+++|||||||||||||+++|+| +..|++|+|.+.++++.......+..
T Consensus 4 lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG--~~~P~~G~v~~~G~~it~l~p~~iar--- 78 (250)
T COG0411 4 LLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITG--FYKPSSGTVIFRGRDITGLPPHRIAR--- 78 (250)
T ss_pred eeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecc--cccCCCceEEECCcccCCCCHHHHHh---
Confidence 5789999999999999999999999999999999999999999999998 46899999999999887654332111
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHH-H--H-HhcC-------CCChHHHHHHHHHhCCCChhhhhcccCCCC
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYE-E--L-KAIG-------ADSAEPRARRILAGLGFSRAMQDRATKNFS 294 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~-~--l-~~~~-------~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 294 (548)
.++. ...+....+..+++.+++..... . + ..++ .....+++.++|+.+||.+ ..+.+..+||
T Consensus 79 -----~Gi~-RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~-~a~~~A~~Ls 151 (250)
T COG0411 79 -----LGIA-RTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGE-LADRPAGNLS 151 (250)
T ss_pred -----ccce-eecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCch-hhcchhhcCC
Confidence 1110 01111223446667666543211 0 0 0111 1234567889999999985 6799999999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
+|||+|+.|||||+.+|+|||||||.+||.+.....+.++|+++ +.||++|.||+.++..+||||++|+.|+++.
T Consensus 152 yG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IA- 230 (250)
T COG0411 152 YGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIA- 230 (250)
T ss_pred hhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcc-
Confidence 99999999999999999999999999999999988888888765 4799999999999999999999999999986
Q ss_pred cCCHHHH
Q psy11936 371 KGNYSMF 377 (548)
Q Consensus 371 ~g~y~~f 377 (548)
.|++++-
T Consensus 231 eG~P~eV 237 (250)
T COG0411 231 EGTPEEV 237 (250)
T ss_pred cCCHHHH
Confidence 5777654
No 141
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-38 Score=318.91 Aligned_cols=219 Identities=18% Similarity=0.279 Sum_probs=164.0
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCC-CCCC--CCeEEEEeceeeccCch--hHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRD-LKVP--PNIDILYCEQEVVADDL--TAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~-~~~~--~~g~I~~~~q~i~~~~~--~~~ 220 (548)
+|+++|+++.|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|.. ...+ .+|+|.+.++.+..... ...
T Consensus 3 ~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (250)
T PRK14245 3 KIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDEL 82 (250)
T ss_pred EEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHH
Confidence 689999999999888999999999999999999999999999999999852 1222 47999999887642111 111
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC-CChHHHHHHHHHhCCCCh---hhhhcccCCCCHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA-DSAEPRARRILAGLGFSR---AMQDRATKNFSGG 296 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGG 296 (548)
. ....++++.. ..+..++.+++..... ...... ......+.++++.+|+.. ...++++.+||||
T Consensus 83 ~-------~~i~~v~q~~----~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 150 (250)
T PRK14245 83 R-------KNVGMVFQRP----NPFPKSIFENVAYGLR-VNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGG 150 (250)
T ss_pred h-------hheEEEecCC----ccCcccHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHH
Confidence 1 0111222111 1112244444422111 111100 113356778899999853 3467889999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
|+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.+ |+.
T Consensus 151 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~-~~~ 229 (250)
T PRK14245 151 QQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEY-DDT 229 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEE-CCH
Confidence 999999999999999999999999999999999999999875 47999999999999999999999999999865 565
Q ss_pred HHH
Q psy11936 375 SMF 377 (548)
Q Consensus 375 ~~f 377 (548)
+++
T Consensus 230 ~~~ 232 (250)
T PRK14245 230 KKI 232 (250)
T ss_pred HHH
Confidence 554
No 142
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-39 Score=342.84 Aligned_cols=216 Identities=23% Similarity=0.298 Sum_probs=168.8
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|++..+|+++||+|.+|++++|+|||||||||||++|+|. ..|.+|+|.+.+..+.... ...
T Consensus 19 ~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl--~~p~~G~I~i~g~~i~~~~--~~~---- 90 (377)
T PRK11607 19 LLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGF--EQPTAGQIMLDGVDLSHVP--PYQ---- 90 (377)
T ss_pred eEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCceEEEECCEECCCCC--HHH----
Confidence 59999999999988899999999999999999999999999999999985 4788999999888764211 111
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
+..+++++. ...++..++.+++..... ...........++.++++.+|+.. +.++++.+|||||||||+|||
T Consensus 91 ---r~ig~vfQ~---~~lfp~ltv~eNi~~~l~-~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~~~LSgGq~QRVaLAR 162 (377)
T PRK11607 91 ---RPINMMFQS---YALFPHMTVEQNIAFGLK-QDKLPKAEIASRVNEMLGLVHMQE-FAKRKPHQLSGGQRQRVALAR 162 (377)
T ss_pred ---CCEEEEeCC---CccCCCCCHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHH
Confidence 111222221 122335567666643211 111112234567889999999974 679999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHh----hcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQ----GWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~----~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
||+.+|+||||||||++||..++.++.+.|. +.+.|+|+||||++++..+||+|++|++|+++.++.+.+.|
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 9999999999999999999999988775554 45789999999999999999999999999999875443333
No 143
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-38 Score=321.67 Aligned_cols=220 Identities=20% Similarity=0.311 Sum_probs=164.8
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC---CCCeEEEEeceeeccCc--hhHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV---PPNIDILYCEQEVVADD--LTAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~---~~~g~I~~~~q~i~~~~--~~~~ 220 (548)
.|+++||+++|++..+|+++||+|.+|+++||+|+|||||||||++|+|...+. |.+|+|.+.++++.... ...+
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~ 83 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV 83 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHH
Confidence 589999999999889999999999999999999999999999999999963222 35899999887663211 1111
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhc-CCCChHHHHHHHHHhCCCC---hhhhhcccCCCCHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI-GADSAEPRARRILAGLGFS---RAMQDRATKNFSGG 296 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~~~~~~L~~lgl~---~~~~~~~~~~LSGG 296 (548)
.. ...++.+. .......++.+++..... .... .......++.++|+.+|+. ....++++.+||||
T Consensus 84 ~~-------~i~~~~q~---~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 152 (258)
T PRK14241 84 RR-------TIGMVFQR---PNPFPTMSIRDNVVAGLK-LNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGG 152 (258)
T ss_pred hc-------ceEEEccc---cccCCCCcHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHH
Confidence 00 11111111 111223455555432211 1110 1112345677889999984 23568889999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEe------CCEEE
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLD------QQKLY 368 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~------~G~i~ 368 (548)
|+|||+|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|+ +|+++
T Consensus 153 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~ 232 (258)
T PRK14241 153 QQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLV 232 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEE
Confidence 999999999999999999999999999999999999999875 4799999999999999999999997 79998
Q ss_pred EEcCCHHHH
Q psy11936 369 YYKGNYSMF 377 (548)
Q Consensus 369 ~~~g~y~~f 377 (548)
.. |+.+++
T Consensus 233 ~~-~~~~~~ 240 (258)
T PRK14241 233 EI-DDTEKI 240 (258)
T ss_pred ec-CCHHHH
Confidence 65 565544
No 144
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.1e-38 Score=322.06 Aligned_cols=223 Identities=22% Similarity=0.325 Sum_probs=166.2
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC-CCCeEEEEeceeeccCc--hhHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV-PPNIDILYCEQEVVADD--LTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~-~~~g~I~~~~q~i~~~~--~~~~~~ 222 (548)
+|+++||+++|+++.+|+++||+|.+|++++|+|||||||||||++|+|...+. +.+|+|.+.+..+.... ......
T Consensus 4 ~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (262)
T PRK09984 4 IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRK 83 (262)
T ss_pred EEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHH
Confidence 589999999999889999999999999999999999999999999999863222 23589999887663211 000000
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHH---H-H-hcC--CCChHHHHHHHHHhCCCChhhhhcccCCCCH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEE---L-K-AIG--ADSAEPRARRILAGLGFSRAMQDRATKNFSG 295 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~---l-~-~~~--~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 295 (548)
. .....++++.. ...+..++.+++...... + . ..+ ......++.++++.+|+. ...++.+.+|||
T Consensus 84 ~----~~~i~~~~q~~---~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~ 155 (262)
T PRK09984 84 S----RANTGYIFQQF---NLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMV-HFAHQRVSTLSG 155 (262)
T ss_pred H----HhheEEEcccc---ccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCH-HHHhCCccccCH
Confidence 0 01111222211 112233444444211100 0 0 000 112345788999999997 467899999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
||+|||+|||||+.+|+||||||||++||+.++.+|.++|.++ +.|||+||||++++..+||+|++|++|+++. .
T Consensus 156 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~-~ 234 (262)
T PRK09984 156 GQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFY-D 234 (262)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-e
Confidence 9999999999999999999999999999999999999999865 4799999999999999999999999999975 5
Q ss_pred CCHHHH
Q psy11936 372 GNYSMF 377 (548)
Q Consensus 372 g~y~~f 377 (548)
|+++++
T Consensus 235 g~~~~~ 240 (262)
T PRK09984 235 GSSQQF 240 (262)
T ss_pred CCHHHh
Confidence 777765
No 145
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-38 Score=319.80 Aligned_cols=220 Identities=21% Similarity=0.279 Sum_probs=164.3
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC---CCCeEEEEeceeeccC--chhHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV---PPNIDILYCEQEVVAD--DLTAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~---~~~g~I~~~~q~i~~~--~~~~~ 220 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|...+. +.+|+|.+.++++... ....+
T Consensus 4 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (253)
T PRK14267 4 AIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEV 83 (253)
T ss_pred eEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHH
Confidence 589999999999888999999999999999999999999999999999853221 3589999988876311 11111
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcC--CCChHHHHHHHHHhCCCCh---hhhhcccCCCCH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG--ADSAEPRARRILAGLGFSR---AMQDRATKNFSG 295 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~--~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSG 295 (548)
. ....++.+.. ......++.+++.... ...... ......++.++++.+|+.. ...++++.+|||
T Consensus 84 ~-------~~i~~~~q~~---~~~~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 152 (253)
T PRK14267 84 R-------REVGMVFQYP---NPFPHLTIYDNVAIGV-KLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSG 152 (253)
T ss_pred h-------hceeEEecCC---ccCCCCcHHHHHHHHH-HhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCH
Confidence 0 0111222111 1122335555543211 111110 1112346778899999852 346788999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCC
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~ 373 (548)
||+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+
T Consensus 153 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~-~~ 231 (253)
T PRK14267 153 GQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEV-GP 231 (253)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEe-CC
Confidence 9999999999999999999999999999999999999999876 37999999999999999999999999999865 55
Q ss_pred HHHH
Q psy11936 374 YSMF 377 (548)
Q Consensus 374 y~~f 377 (548)
.+++
T Consensus 232 ~~~~ 235 (253)
T PRK14267 232 TRKV 235 (253)
T ss_pred HHHH
Confidence 5443
No 146
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2e-38 Score=319.22 Aligned_cols=217 Identities=28% Similarity=0.355 Sum_probs=165.8
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++|+++.|+++.+|+++||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+..+.......+..
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~~~~~~~~---- 75 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGA--LRPDAGTVDLAGVDLHGLSRRARAR---- 75 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC--CCCCCCEEEECCEEcccCCHHHHhh----
Confidence 6799999999988999999999999999999999999999999999985 4678899999887664322111110
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHh-c--CCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA-I--GADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-~--~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
...++.+.. ...+..++.+++......... . .......++.++++.+|+. ...++++.+|||||+|||+|
T Consensus 76 ---~i~~~~q~~---~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~l 148 (256)
T TIGR03873 76 ---RVALVEQDS---DTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELS-HLADRDMSTLSGGERQRVHV 148 (256)
T ss_pred ---heEEecccC---ccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHH
Confidence 111222111 112233455544321100000 1 1112334678899999996 46789999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+++
T Consensus 149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~-g~~~~~ 224 (256)
T TIGR03873 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAA-GPPREV 224 (256)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEe-cCHHHh
Confidence 99999999999999999999999999999998875 57999999999999999999999999999864 665543
No 147
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-38 Score=321.66 Aligned_cols=221 Identities=19% Similarity=0.285 Sum_probs=163.1
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCC--C-CCCCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDL--K-VPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~--~-~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
+|+++||+++|+++.+|+++||+|.+|+++||+|+|||||||||++|+|... + .|.+|+|.+.++++....... ..
T Consensus 21 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~-~~ 99 (268)
T PRK14248 21 ILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV-VN 99 (268)
T ss_pred eEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH-HH
Confidence 5899999999998899999999999999999999999999999999999531 1 157899999888764211100 00
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC-CChHHHHHHHHHhCCCCh---hhhhcccCCCCHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA-DSAEPRARRILAGLGFSR---AMQDRATKNFSGGWR 298 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGqk 298 (548)
. .....++.+.. ..+..++.+++..... ...... ......+.+++..+++.. ...++++.+|||||+
T Consensus 100 ~----~~~i~~v~q~~----~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 100 L----RREIGMVFQKP----NPFPKSIYNNITHALK-YAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQ 170 (268)
T ss_pred H----hccEEEEecCC----ccCcccHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHH
Confidence 0 00111111110 1112244444332111 100000 112345677888888842 346788999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
|||+|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.+ |+.+.
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~-~~~~~ 249 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEY-DQTEQ 249 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEe-CCHHH
Confidence 9999999999999999999999999999999999999876 47999999999999999999999999999876 55544
Q ss_pred H
Q psy11936 377 F 377 (548)
Q Consensus 377 f 377 (548)
+
T Consensus 250 ~ 250 (268)
T PRK14248 250 I 250 (268)
T ss_pred H
Confidence 3
No 148
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-38 Score=321.24 Aligned_cols=220 Identities=19% Similarity=0.291 Sum_probs=163.5
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCC---CCCCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK---VPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~---~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
+|+++||++.|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|...+ .|.+|+|.+.++.+........ .
T Consensus 12 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~-~ 90 (258)
T PRK14268 12 QIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV-E 90 (258)
T ss_pred eEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH-H
Confidence 59999999999988899999999999999999999999999999999986321 1468999998876532111000 0
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCC---hhhhhcccCCCCHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFS---RAMQDRATKNFSGGWRM 299 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~---~~~~~~~~~~LSGGqkq 299 (548)
. .....++.+.. ..+..++.+++.... ............++.++++.+|+. ....++++.+|||||+|
T Consensus 91 -~---~~~i~~v~q~~----~~~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~q 161 (258)
T PRK14268 91 -L---RKNVGMVFQKP----NPFPMSIYDNVAYGP-RIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQ 161 (258)
T ss_pred -H---hhhEEEEecCC----ccCcccHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHH
Confidence 0 00111111111 112234555443211 111111111234577899999884 23467889999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 300 RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 300 RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|+++.. |..++
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~-~~~~~ 239 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEF-GQTRQ 239 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe-CCHHH
Confidence 999999999999999999999999999999999999875 47999999999999999999999999999865 55444
No 149
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-38 Score=317.44 Aligned_cols=218 Identities=22% Similarity=0.350 Sum_probs=162.7
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCC---CCeEEEEeceeeccCc--hhHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVP---PNIDILYCEQEVVADD--LTAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~---~~g~I~~~~q~i~~~~--~~~~ 220 (548)
.|+++||++.|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|...+.| .+|+|.+.+.++.... ...+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQL 82 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHH
Confidence 4889999999998889999999999999999999999999999999999532223 5899999888764211 1111
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcC-CCChHHHHHHHHHhCCCCh---hhhhcccCCCCHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG-ADSAEPRARRILAGLGFSR---AMQDRATKNFSGG 296 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGG 296 (548)
.. ...++.+.. ..+..++.+++.... ...... ......++.++++.+++.. ...++++.+||||
T Consensus 83 ~~-------~i~~~~q~~----~~~~~t~~~ni~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G 150 (250)
T PRK14240 83 RK-------RVGMVFQQP----NPFPMSIYDNVAYGP-RTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGG 150 (250)
T ss_pred hc-------cEEEEecCC----ccCcccHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHH
Confidence 10 111111111 112234444443211 111100 0123456778888888742 3457889999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
|+|||+|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.+ |+.
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~-~~~ 229 (250)
T PRK14240 151 QQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEF-GDT 229 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEe-CCH
Confidence 999999999999999999999999999999999999999876 47999999999999999999999999999876 444
Q ss_pred HH
Q psy11936 375 SM 376 (548)
Q Consensus 375 ~~ 376 (548)
++
T Consensus 230 ~~ 231 (250)
T PRK14240 230 VD 231 (250)
T ss_pred HH
Confidence 43
No 150
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.8e-38 Score=314.18 Aligned_cols=215 Identities=19% Similarity=0.238 Sum_probs=162.1
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++||++.|+++++|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+.++...+.....
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~----- 73 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGL--LPVKSGSIRLDGEDITKLPPHERA----- 73 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCEEEECCEECCCCCHHHHH-----
Confidence 4689999999988999999999999999999999999999999999985 467889999988766432211100
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
.....++++.. ..+...++.+++.... ...+ ......+..++..+++-....++++.+|||||+|||+||||
T Consensus 74 -~~~i~~~~q~~---~~~~~~tv~~~l~~~~---~~~~-~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~a 145 (230)
T TIGR03410 74 -RAGIAYVPQGR---EIFPRLTVEENLLTGL---AALP-RRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARA 145 (230)
T ss_pred -HhCeEEeccCC---cccCCCcHHHHHHHHH---HhcC-cchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHH
Confidence 01112222211 1112234444442211 1111 11233456778887632245688999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+.+
T Consensus 146 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~-~~~~~~ 219 (230)
T TIGR03410 146 LVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVAS-GAGDEL 219 (230)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-CCHHHc
Confidence 99999999999999999999999999998764 57999999999999999999999999999864 565543
No 151
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.6e-38 Score=353.09 Aligned_cols=212 Identities=27% Similarity=0.417 Sum_probs=165.6
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.+|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|.|.+. ..+..
T Consensus 323 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~--~~p~~G~i~~~-~~~~i---------- 389 (556)
T PRK11819 323 KVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQ--EQPDSGTIKIG-ETVKL---------- 389 (556)
T ss_pred eEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCeEEEEC-CceEE----------
Confidence 369999999999988999999999999999999999999999999999985 46778888763 22100
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
+++++.. .......++.+++.... ...+.......+..+|+.+||.....++++.+|||||||||+||
T Consensus 390 -------~~v~q~~--~~~~~~~tv~e~l~~~~---~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la 457 (556)
T PRK11819 390 -------AYVDQSR--DALDPNKTVWEEISGGL---DIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLA 457 (556)
T ss_pred -------EEEeCch--hhcCCCCCHHHHHHhhc---ccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHH
Confidence 0000000 00111223333332110 00011111334567899999975456899999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeC-CEEEEEcCCHHHHHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQ-QKLYYYKGNYSMFKKMY 381 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~-G~i~~~~g~y~~f~~~~ 381 (548)
|||+.+|+||||||||||||+.++.+|.++|.++.+|||+||||++++..+||+|++|++ |++..|.|+|++|.+..
T Consensus 458 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~~ 535 (556)
T PRK11819 458 KTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEEDK 535 (556)
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHHH
Confidence 999999999999999999999999999999999988999999999999999999999986 89998999999986554
No 152
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.8e-39 Score=325.18 Aligned_cols=219 Identities=23% Similarity=0.283 Sum_probs=164.5
Q ss_pred EEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhh
Q psy11936 148 KVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKAD 227 (548)
Q Consensus 148 ~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~ 227 (548)
.+.|+++.|++..+|+|+||+|.+|++++|+|||||||||||++|+|. ..|.+|.|.+.+.++...+...+.....
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl--~~p~~G~i~i~g~~~~~~~~~~~~~~~~-- 101 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRL--IEPTSGKVLIDGQDIAAMSRKELRELRR-- 101 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCeEEEECCEEccccChhhhhhhhc--
Confidence 467999999999999999999999999999999999999999999985 4678899999887654322111100000
Q ss_pred HHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHH
Q psy11936 228 VKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARAL 307 (548)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL 307 (548)
....++++. ....+..++.+++.... .+..........++.++|+.+|+. ...++++.+|||||+|||+|||||
T Consensus 102 -~~i~~v~q~---~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrv~lAral 175 (269)
T cd03294 102 -KKISMVFQS---FALLPHRTVLENVAFGL-EVQGVPRAEREERAAEALELVGLE-GWEHKYPDELSGGMQQRVGLARAL 175 (269)
T ss_pred -CcEEEEecC---cccCCCCcHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCH-hHhhCCcccCCHHHHHHHHHHHHH
Confidence 011112211 11122345555543211 111111112345678899999997 457899999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 308 YIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 308 ~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.+ |+.+++
T Consensus 176 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~-g~~~~~ 248 (269)
T cd03294 176 AVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQV-GTPEEI 248 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe-CCHHHH
Confidence 9999999999999999999999999988765 57999999999999999999999999999865 555544
No 153
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-38 Score=319.15 Aligned_cols=219 Identities=22% Similarity=0.250 Sum_probs=165.0
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|++..+|+++||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+..+..........
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~~~--- 79 (255)
T PRK11300 5 LLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGF--YKPTGGTILLRGQHIEGLPGHQIAR--- 79 (255)
T ss_pred eEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCC--cCCCcceEEECCEECCCCCHHHHHh---
Confidence 58999999999988999999999999999999999999999999999985 4678899999888664322111100
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHH---------HHHh---cCCC--ChHHHHHHHHHhCCCChhhhhcccC
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYE---------ELKA---IGAD--SAEPRARRILAGLGFSRAMQDRATK 291 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~---------~l~~---~~~~--~~~~~~~~~L~~lgl~~~~~~~~~~ 291 (548)
....+.++. .......++.+++..... .+.. .... ....++.++++.+|+. ...++++.
T Consensus 80 ---~~i~~~~q~---~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~ 152 (255)
T PRK11300 80 ---MGVVRTFQH---VRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL-EHANRQAG 152 (255)
T ss_pred ---cCeEEeccC---cccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChh-hhhhCChh
Confidence 001111111 111222344444432110 0000 0001 1234677889999996 46789999
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 292 ~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
+|||||+|||+|||||+.+|+||||||||++||+.++..|.++|.++ +.|||+||||++++..+||++++|++|++
T Consensus 153 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i 232 (255)
T PRK11300 153 NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTP 232 (255)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeE
Confidence 99999999999999999999999999999999999999999988754 57999999999999999999999999999
Q ss_pred EEEcCCHHHH
Q psy11936 368 YYYKGNYSMF 377 (548)
Q Consensus 368 ~~~~g~y~~f 377 (548)
+. .|+.+.+
T Consensus 233 ~~-~~~~~~~ 241 (255)
T PRK11300 233 LA-NGTPEEI 241 (255)
T ss_pred Ee-cCCHHHH
Confidence 85 4555544
No 154
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-38 Score=321.25 Aligned_cols=220 Identities=21% Similarity=0.338 Sum_probs=165.2
Q ss_pred cEEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
+|+++||+++|+ +..+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|..|+|.+.+..+...... ....
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl--~~~~~G~i~~~g~~~~~~~~~-~~~~- 76 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGI--LKPTSGEVLIKGEPIKYDKKS-LLEV- 76 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCccEEEECCEECccccch-HHHH-
Confidence 378999999996 46799999999999999999999999999999999985 467789999998876321110 0000
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
.....++.+... ...+..++.+++..... ...........++.++++.+|+.. ..++++.+|||||+||++||
T Consensus 77 ---~~~i~~v~q~~~--~~~~~~tv~e~i~~~~~-~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LS~Gq~qrv~la 149 (275)
T PRK13639 77 ---RKTVGIVFQNPD--DQLFAPTVEEDVAFGPL-NLGLSKEEVEKRVKEALKAVGMEG-FENKPPHHLSGGQKKRVAIA 149 (275)
T ss_pred ---HhheEEEeeChh--hhhccccHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHCCCch-hhcCChhhCCHHHHHHHHHH
Confidence 011111111110 01122344444421110 001111123356788999999974 67899999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|||+.+|+||||||||++||+.++.+|.++|.++ +.|||+||||++++..+||+|++|++|+++.+ |+.+.+
T Consensus 150 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~-g~~~~~ 224 (275)
T PRK13639 150 GILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKE-GTPKEV 224 (275)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe-CCHHHH
Confidence 9999999999999999999999999999999865 57999999999999999999999999999875 666654
No 155
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-38 Score=320.99 Aligned_cols=218 Identities=25% Similarity=0.305 Sum_probs=164.3
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
.|+++||+++|+++.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.++++++.......+..
T Consensus 7 ~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~~~~~~~~--- 81 (265)
T PRK10253 7 RLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRL--MTPAHGHVWLDGEHIQHYASKEVAR--- 81 (265)
T ss_pred EEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCC--CCCCCcEEEECCEEhhhCCHHHHhh---
Confidence 58999999999988899999999999999999999999999999999985 4677899999887653222111110
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHh-cCC--CChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA-IGA--DSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~--~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
...++++.. ...+..++.+++......... ... .....++.++++.+|+. ...++++.+|||||+|||+
T Consensus 82 ----~i~~v~q~~---~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrv~ 153 (265)
T PRK10253 82 ----RIGLLAQNA---TTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGIT-HLADQSVDTLSGGQRQRAW 153 (265)
T ss_pred ----heEEeeccC---cCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH-HHhcCCcccCChHHHHHHH
Confidence 111222111 111223343333210000000 000 11234678899999997 4678999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.. |..+++
T Consensus 154 laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~-g~~~~~ 231 (265)
T PRK10253 154 IAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQ-GAPKEI 231 (265)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHHHH
Confidence 999999999999999999999999999999988764 57999999999999999999999999999864 555443
No 156
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-38 Score=319.85 Aligned_cols=221 Identities=19% Similarity=0.292 Sum_probs=165.0
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCC---CCCCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK---VPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~---~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
.|+++||+++|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|...+ .|.+|+|.+.++++.........
T Consensus 19 ~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~- 97 (267)
T PRK14235 19 KMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVE- 97 (267)
T ss_pred eEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHH-
Confidence 59999999999988899999999999999999999999999999999995322 14789999988876421110000
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhc--CCCChHHHHHHHHHhCCCCh---hhhhcccCCCCHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI--GADSAEPRARRILAGLGFSR---AMQDRATKNFSGGW 297 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~--~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGq 297 (548)
. .....++.+.. ..+..++.+++.... .+... .......++.++++.+|+.. ...++++.+|||||
T Consensus 98 -~---~~~i~~v~q~~----~~~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq 168 (267)
T PRK14235 98 -L---RARVGMVFQKP----NPFPKSIYENVAYGP-RIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQ 168 (267)
T ss_pred -H---hhceEEEecCC----CCCCCcHHHHHHHHH-HhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHH
Confidence 0 00111111110 112224455443211 11111 11123456788999999963 24578899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHH
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~ 375 (548)
+|||+|||||+.+|+||||||||++||+.++.++.++|..+ +.|||+||||++++..+||++++|++|+++.. |+.+
T Consensus 169 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~-g~~~ 247 (267)
T PRK14235 169 QQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEV-GDTE 247 (267)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEe-CCHH
Confidence 99999999999999999999999999999999999999875 36999999999999999999999999999865 5554
Q ss_pred HH
Q psy11936 376 MF 377 (548)
Q Consensus 376 ~f 377 (548)
++
T Consensus 248 ~~ 249 (267)
T PRK14235 248 KM 249 (267)
T ss_pred HH
Confidence 43
No 157
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=4.6e-39 Score=346.44 Aligned_cols=226 Identities=24% Similarity=0.330 Sum_probs=169.5
Q ss_pred cccEEEEeEEEEeCC-----------ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee
Q psy11936 144 AVDIKVENFSISAKG-----------NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV 212 (548)
Q Consensus 144 ~~~I~l~nls~~y~~-----------~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i 212 (548)
...++++||++.|.. ..+++||||+|.+||++||||+||||||||.|+|+|+ ..|.+|.|.++++++
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL--~~P~~G~i~~~g~~~ 355 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGL--LPPSSGSIIFDGQDL 355 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEEeCccc
Confidence 356889999999973 2479999999999999999999999999999999985 467899999999873
Q ss_pred ccCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCC
Q psy11936 213 VADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKN 292 (548)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~ 292 (548)
... ....... .....+.++.. .....+..++.+.+.+...............++.++|+.+|++...++++|++
T Consensus 356 ~~~-~~~~~~~----r~~~QmvFQdp-~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~e 429 (539)
T COG1123 356 DLT-GGELRRL----RRRIQMVFQDP-YSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHE 429 (539)
T ss_pred ccc-cchhhhh----hhheEEEEeCc-ccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchh
Confidence 211 1111110 00111111111 01111233444444433221111112334467889999999998889999999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLY 368 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~ 368 (548)
|||||||||+|||||+.+|++||+|||||+||+..+..+.++|.++ +.|+||||||+.++..+||||++|++|+|+
T Consensus 430 lSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iV 509 (539)
T COG1123 430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIV 509 (539)
T ss_pred cCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEE
Confidence 9999999999999999999999999999999999998888888654 689999999999999999999999999999
Q ss_pred EEcCCHHHH
Q psy11936 369 YYKGNYSMF 377 (548)
Q Consensus 369 ~~~g~y~~f 377 (548)
+.+.....|
T Consensus 510 E~G~~~~v~ 518 (539)
T COG1123 510 EEGPTEKVF 518 (539)
T ss_pred EeCCHHHHh
Confidence 986333334
No 158
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-38 Score=319.13 Aligned_cols=220 Identities=20% Similarity=0.295 Sum_probs=164.3
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCC---CCCCeEEEEeceeeccCc--hhHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK---VPPNIDILYCEQEVVADD--LTAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~---~~~~g~I~~~~q~i~~~~--~~~~ 220 (548)
+|+++||+++|++..+|+|+||+|.+|+++||+|||||||||||++|+|...+ .|.+|+|.+.++++.... ...+
T Consensus 13 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~ 92 (260)
T PRK10744 13 KIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALL 92 (260)
T ss_pred eEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHH
Confidence 58999999999988899999999999999999999999999999999996321 146899999887763211 1111
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh---hhhhcccCCCCHHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR---AMQDRATKNFSGGW 297 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGq 297 (548)
. ....++++.. ..+..++.+++.................++.++++.+++.. ...++++.+|||||
T Consensus 93 ~-------~~i~~~~q~~----~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq 161 (260)
T PRK10744 93 R-------AKVGMVFQKP----TPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQ 161 (260)
T ss_pred h-------cceEEEecCC----ccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHH
Confidence 1 0111111111 11223444444221110001111122356788999999842 34678899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHH
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~ 375 (548)
+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.+ |+.+
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~-g~~~ 240 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEF-GNTD 240 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHH
Confidence 99999999999999999999999999999999999999876 46999999999999999999999999999876 5555
Q ss_pred HH
Q psy11936 376 MF 377 (548)
Q Consensus 376 ~f 377 (548)
++
T Consensus 241 ~~ 242 (260)
T PRK10744 241 TI 242 (260)
T ss_pred HH
Confidence 44
No 159
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-38 Score=316.81 Aligned_cols=219 Identities=21% Similarity=0.312 Sum_probs=162.5
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC---CCCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV---PPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~---~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
+|+++||+++|+++.+|+++||+|.+|+++||+|+|||||||||++|+|...+. |.+|+|.+.++.+...... ...
T Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~-~~~ 82 (251)
T PRK14251 4 IISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD-LVE 82 (251)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccch-HHH
Confidence 589999999999888999999999999999999999999999999999953211 3689999988876321110 000
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC-CChHHHHHHHHHhCCCC---hhhhhcccCCCCHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA-DSAEPRARRILAGLGFS---RAMQDRATKNFSGGWR 298 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~~~L~~lgl~---~~~~~~~~~~LSGGqk 298 (548)
. .....++.+.. ..+..++.+++..... ...... .....++.++++.+++. ....++++.+|||||+
T Consensus 83 ~----~~~i~~~~q~~----~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 83 L----RKEVGMVFQQP----TPFPFSVYDNVAYGLK-IAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQ 153 (251)
T ss_pred h----hccEEEEecCC----ccCCCcHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHH
Confidence 0 00111111111 1122344444422111 111110 11234567889999984 2345788999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHH
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~ 375 (548)
||++|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~-~~~~ 231 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEA-GPTE 231 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEe-CCHH
Confidence 9999999999999999999999999999999999999876 57999999999999999999999999999876 4443
No 160
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-38 Score=321.79 Aligned_cols=217 Identities=19% Similarity=0.269 Sum_probs=164.7
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
+|+++||++.|++ +++|+++||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+.++.......+...
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~--~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGL--LLPEAGTITVGGMVLSEETVWDVRRQ 82 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCcEEEECCEECCcCcHHHHhhh
Confidence 5899999999974 5699999999999999999999999999999999985 46889999999987643221111111
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
..++++.. ....+..++.+++..... ...........++.+++..+||. ...++.+.+|||||+|||+|
T Consensus 83 -------i~~~~q~~--~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrv~l 151 (279)
T PRK13635 83 -------VGMVFQNP--DNQFVGATVQDDVAFGLE-NIGVPREEMVERVDQALRQVGME-DFLNREPHRLSGGQKQRVAI 151 (279)
T ss_pred -------eEEEEeCH--HHhcccccHHHHHhhhHh-hCCCCHHHHHHHHHHHHHHcCCh-hhhhCCcccCCHHHHHHHHH
Confidence 11111110 001222344444422111 11111122345688899999997 46789999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
||||+.+|+||||||||++||+.++.+|.++|.++ +.|||+||||++++. .||+|++|++|+++.. |+.+.+
T Consensus 152 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~~~-g~~~~~ 227 (279)
T PRK13635 152 AGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEILEE-GTPEEI 227 (279)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEE-CCHHHH
Confidence 99999999999999999999999999999998764 579999999999997 5999999999999864 665554
No 161
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-38 Score=317.95 Aligned_cols=223 Identities=19% Similarity=0.289 Sum_probs=164.5
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC---CCCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV---PPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~---~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
.|+++||+++|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|...+. |.+|+|.+.++.+........ .
T Consensus 4 ~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~-~ 82 (252)
T PRK14256 4 KVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV-S 82 (252)
T ss_pred EEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH-H
Confidence 489999999999888999999999999999999999999999999999953211 357999998887642111000 0
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh---hhhhcccCCCCHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR---AMQDRATKNFSGGWRM 299 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGqkq 299 (548)
. .....++++. .......++.+++.................++.++++.+|+.. ...+..+.+|||||+|
T Consensus 83 ~----~~~i~~~~q~---~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 155 (252)
T PRK14256 83 I----RRRVGMVFQK---PNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQ 155 (252)
T ss_pred h----hccEEEEecC---CCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHH
Confidence 0 0011111111 1112224555554321110000111223456788899999853 3456789999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 300 RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 300 RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
||+|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||++++|++|+++.+ |+.+++
T Consensus 156 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~-~~~~~~ 234 (252)
T PRK14256 156 RLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVEC-GETKKI 234 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEe-CCHHHH
Confidence 999999999999999999999999999999999999876 57999999999999999999999999999876 554443
No 162
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=3.2e-38 Score=315.64 Aligned_cols=219 Identities=20% Similarity=0.300 Sum_probs=158.3
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH-HHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE-SVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~-~~~ 224 (548)
+|+++||++.|+++++|+++||+|.+|++++|+|+|||||||||++|+|.....|.+|+|.+.+.++...+..... ..+
T Consensus 1 ~i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred CeEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence 3789999999998889999999999999999999999999999999998521257889999888665322111110 000
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhc------CCCChHHHHHHHHHhCCCChhhhhcccC-CCCHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI------GADSAEPRARRILAGLGFSRAMQDRATK-NFSGGW 297 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~------~~~~~~~~~~~~L~~lgl~~~~~~~~~~-~LSGGq 297 (548)
....+...+. ...+.......+...+... ........+.++++.+++.....++.+. +|||||
T Consensus 81 ~~~~q~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~ 150 (248)
T PRK09580 81 FMAFQYPVEI----------PGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGE 150 (248)
T ss_pred EEEecCchhc----------cchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHH
Confidence 0000000000 0001111111010001000 0112245667889999996555677775 799999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhh-cCEEEEEeCCEEEEEcCC
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNV-CNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~v-adrIi~L~~G~i~~~~g~ 373 (548)
+|||+|||||+.+|+||||||||++||+.++.++.++|..+ ++|||+||||++++..+ ||+|++|++|+++. .|+
T Consensus 151 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~-~g~ 229 (248)
T PRK09580 151 KKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK-SGD 229 (248)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEE-eCC
Confidence 99999999999999999999999999999999999887654 57999999999999887 89999999999985 577
Q ss_pred HH
Q psy11936 374 YS 375 (548)
Q Consensus 374 y~ 375 (548)
++
T Consensus 230 ~~ 231 (248)
T PRK09580 230 FT 231 (248)
T ss_pred HH
Confidence 66
No 163
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-38 Score=316.46 Aligned_cols=216 Identities=18% Similarity=0.201 Sum_probs=162.5
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++.+...+.... .
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~p~~G~i~~~g~~~~~~~~~~~---~- 78 (237)
T PRK11614 5 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGD--PRATSGRIVFDGKDITDWQTAKI---M- 78 (237)
T ss_pred EEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCC--CCCCCceEEECCEecCCCCHHHH---H-
Confidence 58999999999988899999999999999999999999999999999985 46788999998887643221110 0
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhC-CCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGL-GFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~l-gl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
.....++.+.. ..+...++.+++.... ...........+.++++.+ ++. ...++++.+|||||+|||+||
T Consensus 79 --~~~i~~~~q~~---~~~~~~tv~~~l~~~~---~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LS~G~~qrl~la 149 (237)
T PRK11614 79 --REAVAIVPEGR---RVFSRMTVEENLAMGG---FFAERDQFQERIKWVYELFPRLH-ERRIQRAGTMSGGEQQMLAIG 149 (237)
T ss_pred --HhCEEEeccCc---ccCCCCcHHHHHHHhh---hccChhHHHHHHHHHHHHHHHHH-HHHhCchhhCCHHHHHHHHHH
Confidence 00111111111 1112234444442211 0011112234566777877 465 346788999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||++++|++|+++.. |+.++.
T Consensus 150 ~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~-~~~~~~ 224 (237)
T PRK11614 150 RALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLE-DTGDAL 224 (237)
T ss_pred HHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEee-CCHHHH
Confidence 9999999999999999999999999999988754 57999999999999999999999999999854 666544
No 164
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-38 Score=316.75 Aligned_cols=223 Identities=20% Similarity=0.276 Sum_probs=163.4
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCC---CCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVP---PNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~---~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
+|+++||+++|+++.+|+++||+|.+|+++||+|+|||||||||++|+|.....| .+|+|.+.++.+....... ..
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~-~~ 83 (252)
T PRK14255 5 IITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV-VQ 83 (252)
T ss_pred eEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH-HH
Confidence 5899999999998889999999999999999999999999999999998532123 4899999887663211100 00
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCC-hHHHHHHHHHhCCCC---hhhhhcccCCCCHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADS-AEPRARRILAGLGFS---RAMQDRATKNFSGGWR 298 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~-~~~~~~~~L~~lgl~---~~~~~~~~~~LSGGqk 298 (548)
. .....++.+.. ..+..++.+++.... ......... ...++.++++.+++. ....++++.+|||||+
T Consensus 84 ~----~~~i~~~~q~~----~~~~~tv~~nl~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 84 L----RKQVGMVFQQP----NPFPFSIYENVIYGL-RLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQ 154 (252)
T ss_pred h----cCeEEEEECCC----ccCCCcHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHH
Confidence 0 00111111110 011234444432211 111111111 134566778888764 2346788999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.++.+++.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999876 47999999999999999999999999999988666665
Q ss_pred HH
Q psy11936 377 FK 378 (548)
Q Consensus 377 f~ 378 (548)
|.
T Consensus 235 ~~ 236 (252)
T PRK14255 235 FL 236 (252)
T ss_pred hc
Confidence 53
No 165
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=2.1e-38 Score=313.25 Aligned_cols=211 Identities=21% Similarity=0.325 Sum_probs=160.3
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||++.|+++.+|+|+||+|.+|++++|+|||||||||||++|+|. ..|.+|+|.+.+..+...+......
T Consensus 7 ~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~~--- 81 (225)
T PRK10247 7 LLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASL--ISPTSGTLLFEGEDISTLKPEIYRQ--- 81 (225)
T ss_pred eEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcc--cCCCCCeEEECCEEcCcCCHHHHHh---
Confidence 58999999999988999999999999999999999999999999999985 4678899999887654322111111
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
...++++.. ..+..++.+++.... .+ ........++.++++.+|+.....++++.+|||||+|||+|||
T Consensus 82 ----~i~~~~q~~----~l~~~tv~enl~~~~-~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lar 150 (225)
T PRK10247 82 ----QVSYCAQTP----TLFGDTVYDNLIFPW-QI--RNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIR 150 (225)
T ss_pred ----ccEEEeccc----ccccccHHHHHHhHH-hh--cCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHH
Confidence 111111111 112234444443211 11 1112234567789999999655678999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEe--CCEEEEEcCCHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLD--QQKLYYYKGNYS 375 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~--~G~i~~~~g~y~ 375 (548)
||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++. .||+|++|+ .|+|. .|+|+
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~~--~~~~~ 223 (225)
T PRK10247 151 NLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEMQ--EARYE 223 (225)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchHh--hhhhc
Confidence 999999999999999999999999999988765 579999999999996 699999996 45543 46654
No 166
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-38 Score=320.68 Aligned_cols=217 Identities=26% Similarity=0.341 Sum_probs=162.1
Q ss_pred cEEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCch-hHHHHH
Q psy11936 146 DIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDL-TAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~-~~~~~~ 223 (548)
+|+++||+++|+ +..+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+..+..... ..+...
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGL--LRPQKGKVLVSGIDTGDFSKLQGIRKL 78 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEECCccccHHHHHhh
Confidence 378999999995 56799999999999999999999999999999999985 46788999998876632211 111111
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
..++.+... ...+..++.+++.... ............++.++++.+|+.. ..++++..|||||+|||+|
T Consensus 79 -------i~~v~q~~~--~~~~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~l 147 (274)
T PRK13644 79 -------VGIVFQNPE--TQFVGRTVEEDLAFGP-ENLCLPPIEIRKRVDRALAEIGLEK-YRHRSPKTLSGGQGQCVAL 147 (274)
T ss_pred -------eEEEEEChh--hhcccchHHHHHHhhH-HHcCCCHHHHHHHHHHHHHHCCCHH-HhcCCcccCCHHHHHHHHH
Confidence 111111100 0012234444432111 0101111223456788999999974 5789999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++. .||+|++|++|+++.. |+.+++
T Consensus 148 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~d~v~~l~~G~i~~~-g~~~~~ 222 (274)
T PRK13644 148 AGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DADRIIVMDRGKIVLE-GEPENV 222 (274)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hCCEEEEEECCEEEEE-CCHHHH
Confidence 99999999999999999999999999999988754 579999999999995 6999999999999864 665554
No 167
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-38 Score=310.63 Aligned_cols=204 Identities=24% Similarity=0.339 Sum_probs=156.2
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++|++++|+++. .|+||+|.+|++++|+|||||||||||++|+|. ..|.+|+|.+.+.++..... ..
T Consensus 1 i~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl--~~~~~G~i~~~g~~~~~~~~--~~----- 69 (211)
T cd03298 1 VRLDKIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGF--ETPQSGRVLINGVDVTAAPP--AD----- 69 (211)
T ss_pred CEEEeEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEEcCcCCH--hH-----
Confidence 46899999998754 399999999999999999999999999999985 46788999998876642211 00
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcC-CCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG-ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
....++.+.. ......++.+++..... .... ....+.++.++++.+|+.. ..++++.+|||||||||+|||
T Consensus 70 --~~i~~~~q~~---~~~~~~tv~enl~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~ia~ 141 (211)
T cd03298 70 --RPVSMLFQEN---NLFAHLTVEQNVGLGLS--PGLKLTAEDRQAIEVALARVGLAG-LEKRLPGELSGGERQRVALAR 141 (211)
T ss_pred --ccEEEEeccc---ccCCCCcHHHHHhcccc--cccCccHHHHHHHHHHHHHcCCHH-HHhCCcccCCHHHHHHHHHHH
Confidence 0111111111 11122344444421110 0001 1123456888999999974 578899999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.
T Consensus 142 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 209 (211)
T cd03298 142 VLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAA 209 (211)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEee
Confidence 999999999999999999999999999998764 5799999999999999999999999999875
No 168
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-38 Score=336.13 Aligned_cols=218 Identities=22% Similarity=0.267 Sum_probs=160.3
Q ss_pred EEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhH
Q psy11936 149 VENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADV 228 (548)
Q Consensus 149 l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~ 228 (548)
+.++...|+...+|+|+||+|.+|++++|+|||||||||||++|+|. ..|.+|+|.+.+.++...+...+.....
T Consensus 31 ~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl--~~p~sG~I~i~G~~i~~~~~~~l~~~~~--- 105 (400)
T PRK10070 31 KEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRL--IEPTRGQVLIDGVDIAKISDAELREVRR--- 105 (400)
T ss_pred HHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcC--CCCCCCEEEECCEECCcCCHHHHHHHHh---
Confidence 33333444333489999999999999999999999999999999985 4688999999988764322211110000
Q ss_pred HHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHc
Q psy11936 229 KRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALY 308 (548)
Q Consensus 229 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~ 308 (548)
....++++. ...++..++.+++.... .+..........++.++|+.+||.. ..++++.+|||||||||+|||||+
T Consensus 106 ~~igyv~Q~---~~l~~~~Tv~enl~~~~-~~~~~~~~~~~~~~~e~L~~~gL~~-~~~~~~~~LSgGq~QRv~LArAL~ 180 (400)
T PRK10070 106 KKIAMVFQS---FALMPHMTVLDNTAFGM-ELAGINAEERREKALDALRQVGLEN-YAHSYPDELSGGMRQRVGLARALA 180 (400)
T ss_pred CCEEEEECC---CcCCCCCCHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCCh-hhhcCcccCCHHHHHHHHHHHHHh
Confidence 011122211 11222345666553221 1111111223457888999999974 678999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 309 IEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 309 ~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+++
T Consensus 181 ~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~-g~~~~l 252 (400)
T PRK10070 181 INPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQV-GTPDEI 252 (400)
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEec-CCHHHH
Confidence 999999999999999999999999988654 57999999999999999999999999999864 555554
No 169
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-38 Score=314.09 Aligned_cols=219 Identities=20% Similarity=0.302 Sum_probs=162.6
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC---CCCeEEEEeceeeccC-chhHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV---PPNIDILYCEQEVVAD-DLTAVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~---~~~g~I~~~~q~i~~~-~~~~~~ 221 (548)
+|+++||++.|+++.+|+++||+|.+|+++||+|||||||||||++|+|...+. +.+|+|.+.+.++... +...+.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~ 82 (249)
T PRK14253 3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLR 82 (249)
T ss_pred eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHH
Confidence 589999999999888999999999999999999999999999999999953211 3589999988765321 111111
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC-CChHHHHHHHHHhCCCCh---hhhhcccCCCCHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA-DSAEPRARRILAGLGFSR---AMQDRATKNFSGGW 297 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGq 297 (548)
. ...++.+.. ..+..++.+++.... ....... .....++.++++.+|+.. ...++++.+|||||
T Consensus 83 ~-------~i~~~~q~~----~~~~~tv~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~ 150 (249)
T PRK14253 83 I-------KVGMVFQKP----NPFPMSIYENVAYGL-RAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQ 150 (249)
T ss_pred h-------heeEEecCC----CcCcccHHHHHHhHH-HhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHH
Confidence 1 111121111 112234444442111 0111111 112345677888888753 34578899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHH
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~ 375 (548)
+|||+|||||+.+|+||||||||++||+.++.+|.++|.++ +.|||+||||++++..+||++++|++|+++.. |+.+
T Consensus 151 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~-g~~~ 229 (249)
T PRK14253 151 QQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEH-DDTQ 229 (249)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEe-CCHH
Confidence 99999999999999999999999999999999999999876 47999999999999999999999999999865 5554
Q ss_pred HH
Q psy11936 376 MF 377 (548)
Q Consensus 376 ~f 377 (548)
.+
T Consensus 230 ~~ 231 (249)
T PRK14253 230 VI 231 (249)
T ss_pred HH
Confidence 43
No 170
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-38 Score=316.63 Aligned_cols=217 Identities=19% Similarity=0.289 Sum_probs=163.7
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCC---CCeEEEEeceeeccCc--hhHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVP---PNIDILYCEQEVVADD--LTAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~---~~g~I~~~~q~i~~~~--~~~~ 220 (548)
+|+++||++.|+++.+|+++||+|.+|+++||+|+|||||||||++|+|...+.| .+|+|.+.++++.... ...+
T Consensus 12 ~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 91 (259)
T PRK14274 12 VYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVEL 91 (259)
T ss_pred eEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHH
Confidence 5999999999998889999999999999999999999999999999999632113 4899999888764211 1111
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC---CChHHHHHHHHHhCCCCh---hhhhcccCCCC
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA---DSAEPRARRILAGLGFSR---AMQDRATKNFS 294 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~---~~~~~~~~~~L~~lgl~~---~~~~~~~~~LS 294 (548)
.. ...++++.. ..+..++.+++... ....+. .....++.++++.+|+.. ...++++.+||
T Consensus 92 ~~-------~i~~v~q~~----~~~~~tv~enl~~~---~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS 157 (259)
T PRK14274 92 RK-------NIGMVFQKG----NPFPQSIFDNVAYG---PRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLS 157 (259)
T ss_pred hh-------ceEEEecCC----cccccCHHHHHHhH---HHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCC
Confidence 11 111111111 11122444444211 111111 112345778899999853 34678899999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
|||+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.. |
T Consensus 158 ~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~-g 236 (259)
T PRK14274 158 GGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVEC-N 236 (259)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEE-C
Confidence 99999999999999999999999999999999999999999876 47999999999999999999999999999865 5
Q ss_pred CHHHH
Q psy11936 373 NYSMF 377 (548)
Q Consensus 373 ~y~~f 377 (548)
+.+++
T Consensus 237 ~~~~~ 241 (259)
T PRK14274 237 DTNKM 241 (259)
T ss_pred CHHHH
Confidence 65554
No 171
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-38 Score=314.24 Aligned_cols=218 Identities=18% Similarity=0.295 Sum_probs=163.2
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC---CCCeEEEEeceeeccCch--hHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV---PPNIDILYCEQEVVADDL--TAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~---~~~g~I~~~~q~i~~~~~--~~~ 220 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|...+. +.+|+|.+.+.++..... ...
T Consensus 4 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (251)
T PRK14270 4 KMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVEL 83 (251)
T ss_pred EEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHH
Confidence 589999999999888999999999999999999999999999999999953221 368999998877642111 011
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhc-CCCChHHHHHHHHHhCCCCh---hhhhcccCCCCHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI-GADSAEPRARRILAGLGFSR---AMQDRATKNFSGG 296 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGG 296 (548)
.. ...++++.. ..+..++.+++.... ..... .......++.++++.+|+.. ...++++.+||||
T Consensus 84 ~~-------~i~~~~q~~----~~~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 151 (251)
T PRK14270 84 RK-------RVGMVFQKP----NPFPMSIYDNVAYGP-RIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGG 151 (251)
T ss_pred Hh-------heEEEecCC----CcCCCcHHHHHHhHH-HhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHH
Confidence 11 111222111 112234444442111 11111 01122356778899998742 3467889999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
|+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.++ +.
T Consensus 152 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~-~~ 230 (251)
T PRK14270 152 QQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFN-KT 230 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeC-CH
Confidence 999999999999999999999999999999999999999876 479999999999999999999999999998764 44
Q ss_pred HH
Q psy11936 375 SM 376 (548)
Q Consensus 375 ~~ 376 (548)
++
T Consensus 231 ~~ 232 (251)
T PRK14270 231 EK 232 (251)
T ss_pred HH
Confidence 33
No 172
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-38 Score=313.08 Aligned_cols=213 Identities=28% Similarity=0.316 Sum_probs=163.0
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|.++||+++|+++.+|+++||+|.+|+++||+|+|||||||||++|+|. ..|..|.|.+.++++...... ..
T Consensus 1 l~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~--~~~~~G~i~~~g~~~~~~~~~--~~---- 72 (232)
T cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGF--ETPTSGEILLDGKDITNLPPH--KR---- 72 (232)
T ss_pred CEEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEEcCcCChh--hc----
Confidence 4689999999988999999999999999999999999999999999985 467789999988766422110 00
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
...+..+.. ......++.+++..... ...........++..+++.+|+. ...++.+..|||||+|||+||||
T Consensus 73 ---~i~~~~q~~---~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qrl~lara 144 (232)
T cd03300 73 ---PVNTVFQNY---ALFPHLTVFENIAFGLR-LKKLPKAEIKERVAEALDLVQLE-GYANRKPSQLSGGQQQRVAIARA 144 (232)
T ss_pred ---ceEEEeccc---ccCCCCcHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHH
Confidence 111111111 11112344444322111 11111122345677899999997 46788999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
|+.+|++|||||||++||+.++.+|.++|.++ +.|||+||||++++..+||+|++|++|+++.+ |+.+.
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~-~~~~~ 217 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQI-GTPEE 217 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEec-CCHHH
Confidence 99999999999999999999999999988764 57999999999999999999999999999876 44443
No 173
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-38 Score=316.32 Aligned_cols=220 Identities=25% Similarity=0.315 Sum_probs=161.6
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCC---CCeEEEEeceeeccCc--hhHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVP---PNIDILYCEQEVVADD--LTAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~---~~g~I~~~~q~i~~~~--~~~~ 220 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|...+.+ .+|+|.+.+..+.... ...+
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T PRK14272 4 LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAM 83 (252)
T ss_pred EEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHh
Confidence 5889999999998899999999999999999999999999999999999632222 3799999887664211 1111
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHhCCCCh---hhhhcccCCCCHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD-SAEPRARRILAGLGFSR---AMQDRATKNFSGG 296 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~-~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGG 296 (548)
.. ...++.+.. ......++.+++..... ....... ...+.+.+++..+++.. ...++++.+||||
T Consensus 84 ~~-------~i~~~~q~~---~~~~~~t~~enl~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G 152 (252)
T PRK14272 84 RR-------RVGMVFQKP---NPFPTMSVFDNVVAGLK-LAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGG 152 (252)
T ss_pred hc-------eeEEEeccC---ccCcCCCHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHH
Confidence 10 111111111 11122345554432111 1111011 12344566677777632 3457889999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~--~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
|+|||+|||||+.+|+||||||||++||+.++.++.++|+++. .|||+||||++++..+||+|++|++|+++.. |+.
T Consensus 153 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~-~~~ 231 (252)
T PRK14272 153 QQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEH-GPT 231 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCH
Confidence 9999999999999999999999999999999999999998763 7999999999999999999999999999864 555
Q ss_pred HHH
Q psy11936 375 SMF 377 (548)
Q Consensus 375 ~~f 377 (548)
+++
T Consensus 232 ~~~ 234 (252)
T PRK14272 232 DQL 234 (252)
T ss_pred HHH
Confidence 443
No 174
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=1.2e-38 Score=335.27 Aligned_cols=213 Identities=23% Similarity=0.276 Sum_probs=163.9
Q ss_pred EEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHH
Q psy11936 154 ISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTEL 233 (548)
Q Consensus 154 ~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l 233 (548)
+.|+++.+|+|+||+|.+|++++|+|||||||||||++|+|. ..|.+|+|.+.++++...+...+.... .....+
T Consensus 1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl--~~p~~G~I~i~G~~i~~~~~~~~~~~r---r~~i~~ 75 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRL--IEPTAGQIFIDGENIMKQSPVELREVR---RKKIGM 75 (363)
T ss_pred CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCC--CCCCceEEEECCEECCcCCHHHHHHHH---hCcEEE
Confidence 468888999999999999999999999999999999999985 478899999999887543322211000 011122
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCE
Q psy11936 234 LAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTL 313 (548)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~l 313 (548)
+++. ...++..++.+++..... +..........++.++|+.+||. ...++++.+|||||||||+|||||+.+|+|
T Consensus 76 v~Q~---~~l~~~~TV~eNi~~~~~-~~~~~~~~~~~~~~~~l~~vgL~-~~~~~~p~~LSGGq~QRV~lARAL~~~p~i 150 (363)
T TIGR01186 76 VFQQ---FALFPHMTILQNTSLGPE-LLGWPEQERKEKALELLKLVGLE-EYEHRYPDELSGGMQQRVGLARALAAEPDI 150 (363)
T ss_pred EECC---CcCCCCCCHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 2221 122234566666543211 11111122356788999999997 467999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 314 LLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 314 LLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|||||||++||+.++.++.+.|..+ +.|||+||||++++..+||+|++|++|+++.. |+.+++
T Consensus 151 LLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~-g~~~ei 217 (363)
T TIGR01186 151 LLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQV-GTPDEI 217 (363)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEee-CCHHHH
Confidence 9999999999999999999988654 57999999999999999999999999999875 555544
No 175
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-37 Score=317.75 Aligned_cols=221 Identities=21% Similarity=0.302 Sum_probs=163.8
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC---CCCeEEEEeceeeccCc-hhHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV---PPNIDILYCEQEVVADD-LTAV 220 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~---~~~g~I~~~~q~i~~~~-~~~~ 220 (548)
.+|+++||+++|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|...+. |.+|+|.+.+..+.... ...+
T Consensus 20 ~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~ 99 (276)
T PRK14271 20 PAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEF 99 (276)
T ss_pred cEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHH
Confidence 4689999999999889999999999999999999999999999999999953221 46899999887653211 1011
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh---hhhhcccCCCCHHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR---AMQDRATKNFSGGW 297 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGq 297 (548)
. ....++++.. ..+..++.+++..................+.++++.+|+.. ...++.+.+|||||
T Consensus 100 ~-------~~i~~v~q~~----~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq 168 (276)
T PRK14271 100 R-------RRVGMLFQRP----NPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQ 168 (276)
T ss_pred h-------hheEEeccCC----ccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHH
Confidence 1 1111222111 11223444444221100000011112234567889999863 23578899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHH
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~ 375 (548)
+|||+|||||+.+|+||||||||++||+.++.+|.++|..+ ..|||+||||++++..+||++++|++|+++.. |+.+
T Consensus 169 ~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~-g~~~ 247 (276)
T PRK14271 169 QQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEE-GPTE 247 (276)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHH
Confidence 99999999999999999999999999999999999999876 47999999999999999999999999999865 5555
Q ss_pred HH
Q psy11936 376 MF 377 (548)
Q Consensus 376 ~f 377 (548)
++
T Consensus 248 ~~ 249 (276)
T PRK14271 248 QL 249 (276)
T ss_pred HH
Confidence 44
No 176
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-38 Score=313.01 Aligned_cols=221 Identities=24% Similarity=0.335 Sum_probs=163.3
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC---CCCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV---PPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~---~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
+|+++||+++|+++.+|+++||+|.+|++++|+|+|||||||||++|+|...+. |.+|+|.+.+.++....... ..
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~-~~ 81 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV-TE 81 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH-HH
Confidence 589999999999889999999999999999999999999999999999853221 36899999887653211000 00
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC-CChHHHHHHHHHhCCCCh---hhhhcccCCCCHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA-DSAEPRARRILAGLGFSR---AMQDRATKNFSGGWR 298 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGqk 298 (548)
. .....++++.. ..+..++.+++..... ...... ...+..+.++++.+|+.. ...++++.+|||||+
T Consensus 82 ~----~~~i~~~~q~~----~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 82 Y----RKKVGMVFQKP----TPFPMSIYDNVAFGPR-IHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQ 152 (250)
T ss_pred h----hhhEEEEecCC----ccCcccHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHH
Confidence 0 00111111111 1122344444432111 111111 112345677889999853 246889999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
||++|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.+ |+.++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~-g~~~~ 231 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEY-GPTRE 231 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-cCHHH
Confidence 9999999999999999999999999999999999999875 47999999999999999999999999999865 55544
Q ss_pred H
Q psy11936 377 F 377 (548)
Q Consensus 377 f 377 (548)
+
T Consensus 232 ~ 232 (250)
T PRK14262 232 I 232 (250)
T ss_pred H
Confidence 3
No 177
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=5.6e-38 Score=318.33 Aligned_cols=218 Identities=22% Similarity=0.351 Sum_probs=160.5
Q ss_pred cEEEEeEEEEeC---------CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc
Q psy11936 146 DIKVENFSISAK---------GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD 216 (548)
Q Consensus 146 ~I~l~nls~~y~---------~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~ 216 (548)
+|+++||++.|+ ++.+|+|+||+|.+|++++|+|||||||||||++|+|. ..|.+|.|.+.+..+....
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~sG~i~~~g~~~~~~~ 80 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGL--ESPSQGNVSWRGEPLAKLN 80 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEeccccC
Confidence 589999999997 46899999999999999999999999999999999985 4678899999887654322
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHH
Q psy11936 217 LTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGG 296 (548)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 296 (548)
....... .....++.+.... ......+..+++......+..........++.++++.+|+.....++.+.+||||
T Consensus 81 ~~~~~~~----~~~i~~v~q~~~~-~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G 155 (268)
T PRK10419 81 RAQRKAF----RRDIQMVFQDSIS-AVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGG 155 (268)
T ss_pred hhHHHHH----HhcEEEEEcChhh-ccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChH
Confidence 1110000 0011111111000 0111223333322111111111111223467899999999745678999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|+|||+|||||+.+|+||||||||++||+.++..+.++|..+ +.|||+||||++++..+||+|++|++|+++..
T Consensus 156 e~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~ 233 (268)
T PRK10419 156 QLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVET 233 (268)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeee
Confidence 999999999999999999999999999999998888888654 57999999999999999999999999999865
No 178
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-38 Score=314.85 Aligned_cols=220 Identities=21% Similarity=0.338 Sum_probs=163.4
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCC---CCeEEEEeceeeccC--chhH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVP---PNIDILYCEQEVVAD--DLTA 219 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~---~~g~I~~~~q~i~~~--~~~~ 219 (548)
.+|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|...+.| .+|+|.+.++++... ....
T Consensus 5 ~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 84 (253)
T PRK14261 5 IILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVA 84 (253)
T ss_pred ceEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhh
Confidence 36899999999998899999999999999999999999999999999998532223 379999988876432 1111
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcC-CCChHHHHHHHHHhCCCCh---hhhhcccCCCCH
Q psy11936 220 VESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG-ADSAEPRARRILAGLGFSR---AMQDRATKNFSG 295 (548)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSG 295 (548)
... ...++.+.. ..+..++.+++.... ...... ....+..+.++++.+++.. ...++.+.+|||
T Consensus 85 ~~~-------~i~~~~q~~----~~~~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~ 152 (253)
T PRK14261 85 LRR-------KIGMVFQRP----NPFPKSIYENVAYGP-RIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSG 152 (253)
T ss_pred hhc-------eEEEEecCC----ccCcccHHHHHHhhH-HhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCH
Confidence 100 111111111 112234445443211 111100 1122345677888888742 245788999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCC
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~ 373 (548)
||+|||+|||||+.+|+||||||||++||+.++.++.++|..+ +.|||+||||++++..+||+|++|++|+++.. |+
T Consensus 153 G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~-g~ 231 (253)
T PRK14261 153 GQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEF-DK 231 (253)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEc-CC
Confidence 9999999999999999999999999999999999999999875 47999999999999999999999999999865 55
Q ss_pred HHHH
Q psy11936 374 YSMF 377 (548)
Q Consensus 374 y~~f 377 (548)
.+++
T Consensus 232 ~~~~ 235 (253)
T PRK14261 232 TTQI 235 (253)
T ss_pred HHHH
Confidence 5443
No 179
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=4.7e-38 Score=315.28 Aligned_cols=221 Identities=20% Similarity=0.295 Sum_probs=160.4
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.+|+++||++.|+++.+|+++||+|.+|+++||+|+|||||||||++|+|.....|.+|+|.+.+.++...........
T Consensus 6 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~- 84 (252)
T CHL00131 6 PILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL- 84 (252)
T ss_pred ceEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee-
Confidence 3699999999998888999999999999999999999999999999999852235788999998876543221110000
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHH---hcC---CCChHHHHHHHHHhCCCChhhhhcccC-CCCHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELK---AIG---ADSAEPRARRILAGLGFSRAMQDRATK-NFSGGW 297 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~---~~~---~~~~~~~~~~~L~~lgl~~~~~~~~~~-~LSGGq 297 (548)
...+..+.. ......+..+++........ ... ......++.++|+.+|+.....++.+. .|||||
T Consensus 85 -----~~~~~~q~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~ 156 (252)
T CHL00131 85 -----GIFLAFQYP---IEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGE 156 (252)
T ss_pred -----eEEEEeccc---cccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHH
Confidence 000000100 00111122222211110000 000 011234677899999997445677787 599999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhh-cCEEEEEeCCEEEEEcCC
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNV-CNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~v-adrIi~L~~G~i~~~~g~ 373 (548)
+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+ ||+|++|++|+++.. |+
T Consensus 157 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~-~~ 235 (252)
T CHL00131 157 KKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKT-GD 235 (252)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEe-cC
Confidence 99999999999999999999999999999999999999765 57999999999999887 999999999999864 55
Q ss_pred HH
Q psy11936 374 YS 375 (548)
Q Consensus 374 y~ 375 (548)
.+
T Consensus 236 ~~ 237 (252)
T CHL00131 236 AE 237 (252)
T ss_pred hh
Confidence 44
No 180
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-38 Score=319.93 Aligned_cols=217 Identities=21% Similarity=0.296 Sum_probs=162.4
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCC---eEEEEeceeeccCchhHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN---IDILYCEQEVVADDLTAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~---g~I~~~~q~i~~~~~~~~ 220 (548)
+|+++||+++|++ +.+|+++||+|.+|+++||+|||||||||||++|+|.. .|.. |+|.+.+.++........
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~--~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLL--LPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhccc--CCCCCCCcEEEECCEECCcCCHHHH
Confidence 5899999999964 46999999999999999999999999999999999853 4544 899998887643221111
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqR 300 (548)
... .+++.+.. ....+..++.+++.... ............++.++++.+|+. ...++++.+|||||+||
T Consensus 83 ~~~-------ig~v~q~~--~~~~~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LS~G~~qr 151 (282)
T PRK13640 83 REK-------VGIVFQNP--DNQFVGATVGDDVAFGL-ENRAVPRPEMIKIVRDVLADVGML-DYIDSEPANLSGGQKQR 151 (282)
T ss_pred Hhh-------eEEEEECH--HHhhccCCHHHHHHhhH-HhCCCCHHHHHHHHHHHHHHCCCh-hHhcCCcccCCHHHHHH
Confidence 111 11111110 01122334455442111 011111112345688899999997 46789999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
|+|||||+.+|+||||||||++||+.++.+|.++|..+ +.|||+||||++++. +||+|++|++|+++.+ |+.++
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~~-g~~~~ 229 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQ-GSPVE 229 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEe-CCHHH
Confidence 99999999999999999999999999999999988764 579999999999995 7999999999999976 55544
Q ss_pred H
Q psy11936 377 F 377 (548)
Q Consensus 377 f 377 (548)
+
T Consensus 230 ~ 230 (282)
T PRK13640 230 I 230 (282)
T ss_pred H
Confidence 3
No 181
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-38 Score=317.76 Aligned_cols=218 Identities=17% Similarity=0.295 Sum_probs=165.1
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCC---CCCCeEEEEeceeeccCc--hhH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK---VPPNIDILYCEQEVVADD--LTA 219 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~---~~~~g~I~~~~q~i~~~~--~~~ 219 (548)
.+|+++||+++|+++++|+|+||+|.+|+++||+|+|||||||||++|+|...+ .|.+|+|.+.+.++.... ...
T Consensus 19 ~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 98 (267)
T PRK14237 19 IALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYE 98 (267)
T ss_pred eEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHH
Confidence 369999999999988999999999999999999999999999999999996322 257899999887763211 111
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC---CChHHHHHHHHHhCCCCh---hhhhcccCCC
Q psy11936 220 VESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA---DSAEPRARRILAGLGFSR---AMQDRATKNF 293 (548)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~---~~~~~~~~~~L~~lgl~~---~~~~~~~~~L 293 (548)
+.. ...++++.. ..+..++.+++.... ...+. .....++.++++.+++.. ...++++.+|
T Consensus 99 ~~~-------~i~~v~q~~----~~~~~tv~eni~~~~---~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~L 164 (267)
T PRK14237 99 MRK-------HIGMVFQRP----NPFAKSIYENITFAL---ERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTL 164 (267)
T ss_pred Hhc-------ceEEEecCC----ccccccHHHHHHhHH---HhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccC
Confidence 111 111111111 111234445443211 11111 123456778899999852 3568889999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
||||+|||+|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.+
T Consensus 165 S~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~- 243 (267)
T PRK14237 165 SGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEY- 243 (267)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEe-
Confidence 999999999999999999999999999999999999999998875 37999999999999999999999999999976
Q ss_pred CCHHHH
Q psy11936 372 GNYSMF 377 (548)
Q Consensus 372 g~y~~f 377 (548)
|+.+.+
T Consensus 244 g~~~~~ 249 (267)
T PRK14237 244 DKTRNI 249 (267)
T ss_pred CCHHHH
Confidence 555544
No 182
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=4.5e-38 Score=310.06 Aligned_cols=203 Identities=28% Similarity=0.394 Sum_probs=159.7
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++||+++|+++.+|+++||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+..+.....
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~~~~~~~~~~--------- 69 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGI--LRPTSGEIIFDGHPWTRKDL--------- 69 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEecccccc---------
Confidence 4689999999988999999999999999999999999999999999985 46788999988865421110
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
....+.++. .......++.+++.... .+ .+ ....++.++++.+|+.. ..++++.+|||||+||++||||
T Consensus 70 --~~~~~~~q~---~~~~~~~t~~~~~~~~~-~~--~~--~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~~rv~lara 138 (223)
T TIGR03740 70 --HKIGSLIES---PPLYENLTARENLKVHT-TL--LG--LPDSRIDEVLNIVDLTN-TGKKKAKQFSLGMKQRLGIAIA 138 (223)
T ss_pred --ccEEEEcCC---CCccccCCHHHHHHHHH-HH--cC--CCHHHHHHHHHHcCCcH-HHhhhHhhCCHHHHHHHHHHHH
Confidence 001111111 01112234444442211 11 11 12457888999999974 5688999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
|+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++..+
T Consensus 139 l~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~ 206 (223)
T TIGR03740 139 LLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQG 206 (223)
T ss_pred HhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEec
Confidence 99999999999999999999999999999765 469999999999999999999999999998753
No 183
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.2e-37 Score=345.98 Aligned_cols=212 Identities=28% Similarity=0.429 Sum_probs=164.4
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.+|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|.|.+. ..+..
T Consensus 321 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~--~~p~~G~i~~~-~~~~i---------- 387 (552)
T TIGR03719 321 KVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQ--EQPDSGTIKIG-ETVKL---------- 387 (552)
T ss_pred eEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCC--CCCCCeEEEEC-CceEE----------
Confidence 369999999999988999999999999999999999999999999999985 35778888763 22100
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
+++.+.. .......++.+++.... ...+......++..+|..+||.....++++.+|||||||||+||
T Consensus 388 -------~~v~q~~--~~~~~~~tv~e~l~~~~---~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la 455 (552)
T TIGR03719 388 -------AYVDQSR--DALDPNKTVWEEISGGL---DIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLA 455 (552)
T ss_pred -------EEEeCCc--cccCCCCcHHHHHHhhc---cccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHH
Confidence 0000000 00011223333322110 00011112334567899999975456889999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeC-CEEEEEcCCHHHHHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQ-QKLYYYKGNYSMFKKMY 381 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~-G~i~~~~g~y~~f~~~~ 381 (548)
|||+.+|+||||||||||||+.++.+|.++|.++++|||+||||++++..+||+|++|++ |++..|.|+|++|.+.+
T Consensus 456 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~~~ 533 (552)
T TIGR03719 456 KTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEEDK 533 (552)
T ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHHHH
Confidence 999999999999999999999999999999999988999999999999999999999987 68988999998886543
No 184
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=4.7e-38 Score=308.93 Aligned_cols=202 Identities=27% Similarity=0.397 Sum_probs=151.8
Q ss_pred EEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 147 IKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 147 I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
|+++|+++.|++ +.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++.+..........
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~~~~~~~~-- 78 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL--YKPTSGSVLLDGTDIRQLDPADLRR-- 78 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--cCCCCCeEEECCEEhHHCCHHHHHh--
Confidence 789999999975 5799999999999999999999999999999999985 3678899999887653211111100
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcc-----------cCCC
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRA-----------TKNF 293 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~-----------~~~L 293 (548)
...++.+.. ..+..++.+++ ...........+.++++.+++.. ..++. +.+|
T Consensus 79 -----~i~~~~q~~----~~~~~tv~e~l-------~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~~~~~~~L 141 (220)
T cd03245 79 -----NIGYVPQDV----TLFYGTLRDNI-------TLGAPLADDERILRAAELAGVTD-FVNKHPNGLDLQIGERGRGL 141 (220)
T ss_pred -----hEEEeCCCC----ccccchHHHHh-------hcCCCCCCHHHHHHHHHHcCcHH-HHHhccccccceecCCCccC
Confidence 111111110 01112222222 11111122445667888888864 34543 4699
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~--~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
||||+|||+|||||+.+|++|||||||++||+.++.++.++|.++. .|||+||||++++ .+||+|++|++|+++.+
T Consensus 142 SgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d~v~~l~~g~i~~~ 219 (220)
T cd03245 142 SGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIVMDSGRIVAD 219 (220)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCeEeec
Confidence 9999999999999999999999999999999999999999998763 6999999999987 69999999999998753
No 185
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=4e-38 Score=311.23 Aligned_cols=198 Identities=22% Similarity=0.275 Sum_probs=156.0
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
+.++|+++.|+++++|+|+||+|.+|+++||+|+||||||||+++|+|. ..|.+|+|.+.++.+.....
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~p~~G~i~~~g~~~~~~~~--------- 91 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGI--YPPDSGTVTVRGRVSSLLGL--------- 91 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEEchhhcc---------
Confidence 6788999999999999999999999999999999999999999999985 46888999988765421000
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
. ....+..++.+++..... ...........++.++++.+|+.. ..++++.+|||||||||+||||
T Consensus 92 ---~----------~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~lara 156 (224)
T cd03220 92 ---G----------GGFNPELTGRENIYLNGR-LLGLSRKEIDEKIDEIIEFSELGD-FIDLPVKTYSSGMKARLAFAIA 156 (224)
T ss_pred ---c----------ccCCCCCcHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHH
Confidence 0 000112333343321110 111111122345678899999974 5688999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++..
T Consensus 157 l~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 223 (224)
T cd03220 157 TALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFD 223 (224)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence 99999999999999999999999888888764 47999999999999999999999999998753
No 186
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-38 Score=312.08 Aligned_cols=213 Identities=22% Similarity=0.275 Sum_probs=161.4
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|++.. .++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++...... ..
T Consensus 1 ~l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~--~~--- 71 (232)
T PRK10771 1 MLKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGF--LTPASGSLTLNGQDHTTTPPS--RR--- 71 (232)
T ss_pred CeEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCeecCcCChh--hc---
Confidence 378999999998643 499999999999999999999999999999985 467889999988765321110 00
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcC-CCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG-ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
...++++.. ......++.+++..... .... ......++.++++.+|+. ...++++.+|||||+|||+||
T Consensus 72 ----~i~~~~q~~---~~~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la 141 (232)
T PRK10771 72 ----PVSMLFQEN---NLFSHLTVAQNIGLGLN--PGLKLNAAQREKLHAIARQMGIE-DLLARLPGQLSGGQRQRVALA 141 (232)
T ss_pred ----cEEEEeccc---ccccCCcHHHHHhcccc--cccCCCHHHHHHHHHHHHHcCcH-HHHhCCcccCCHHHHHHHHHH
Confidence 011111110 11112344444321110 0001 112345688899999997 467999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~ 378 (548)
|||+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|++++ .|+++++.
T Consensus 142 ral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~-~g~~~~~~ 218 (232)
T PRK10771 142 RCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAW-DGPTDELL 218 (232)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 9999999999999999999999999988888654 5799999999999999999999999999985 57777654
No 187
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-37 Score=344.78 Aligned_cols=209 Identities=27% Similarity=0.461 Sum_probs=166.3
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.+|+++||+++|+++.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|.|.+.+.....
T Consensus 318 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~--~~p~~G~i~~~~~~~i~---------- 385 (530)
T PRK15064 318 NALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGE--LEPDSGTVKWSENANIG---------- 385 (530)
T ss_pred ceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCeEEEECCceEEE----------
Confidence 369999999999988899999999999999999999999999999999985 46778888765531100
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
++.+... .......++.+++.. +. .......++.++|+.+|+.....++++.+|||||||||+||
T Consensus 386 --------~~~q~~~-~~~~~~~t~~~~~~~----~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la 450 (530)
T PRK15064 386 --------YYAQDHA-YDFENDLTLFDWMSQ----WR--QEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFG 450 (530)
T ss_pred --------EEccccc-ccCCCCCcHHHHHHH----hc--cCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHH
Confidence 0000000 000011222222210 10 11123456888999999964567999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKM 380 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~~ 380 (548)
|||+.+|+||||||||||||+.++.+|.++|.++++|||+||||++++..+||+|++|++|+++.+.|++++|.+.
T Consensus 451 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 451 KLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 9999999999999999999999999999999999899999999999999999999999999998788999887543
No 188
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-38 Score=318.29 Aligned_cols=217 Identities=25% Similarity=0.299 Sum_probs=162.4
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCC--------CeEEEEeceeeccCch
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPP--------NIDILYCEQEVVADDL 217 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~--------~g~I~~~~q~i~~~~~ 217 (548)
+|+++||+++|+++.+|+++||+|.+|+++||+|||||||||||++|+|.. .|. +|+|.+.+.++.....
T Consensus 1 ml~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~--~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDL--TGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred CeEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCcccccccCCceEEEECCEEcccCCH
Confidence 378999999999889999999999999999999999999999999999852 444 7999998876542221
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHH-HhcCC--CChHHHHHHHHHhCCCChhhhhcccCCCC
Q psy11936 218 TAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEEL-KAIGA--DSAEPRARRILAGLGFSRAMQDRATKNFS 294 (548)
Q Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l-~~~~~--~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 294 (548)
..+.. ...++++.. ...+..++.+++....... ...+. .....++..+|+.+|+.. ..++++.+||
T Consensus 79 ~~~~~-------~~~~v~q~~---~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS 147 (272)
T PRK13547 79 PRLAR-------LRAVLPQAA---QPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATA-LVGRDVTTLS 147 (272)
T ss_pred HHHHh-------hcEEecccC---CCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHh-hhcCCcccCC
Confidence 11111 011112111 1122334444442210000 00000 112346788999999974 5689999999
Q ss_pred HHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEE
Q psy11936 295 GGWRMRVSLARALY---------IEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIH 361 (548)
Q Consensus 295 GGqkqRvaLAraL~---------~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~ 361 (548)
|||+|||+|||||+ .+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||++++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999999999 599999999999999999999999988754 57999999999999999999999
Q ss_pred EeCCEEEEEcCCHHH
Q psy11936 362 LDQQKLYYYKGNYSM 376 (548)
Q Consensus 362 L~~G~i~~~~g~y~~ 376 (548)
|++|+++.. |+.++
T Consensus 228 l~~G~i~~~-g~~~~ 241 (272)
T PRK13547 228 LADGAIVAH-GAPAD 241 (272)
T ss_pred EECCeEEEe-cCHHH
Confidence 999999864 55443
No 189
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-37 Score=316.76 Aligned_cols=216 Identities=22% Similarity=0.333 Sum_probs=162.8
Q ss_pred cEEEEeEEEEeC--CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAK--GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~--~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
+|+++||+++|+ ++.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++.......+..
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~I~~~g~~i~~~~~~~~~~- 83 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGL--LKPQSGEIKIDGITISKENLKEIRK- 83 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEecCcCCHHHHhc-
Confidence 689999999995 46799999999999999999999999999999999985 4678899999887764222111111
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
...++.+... ..++..++.+++..... ...........++.++++.+|+. ...++.+.+|||||+||++|
T Consensus 84 ------~i~~v~q~~~--~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~l 153 (271)
T PRK13632 84 ------KIGIIFQNPD--NQFIGATVEDDIAFGLE-NKKVPPKKMKDIIDDLAKKVGME-DYLDKEPQNLSGGQKQRVAI 153 (271)
T ss_pred ------ceEEEEeCHH--HhcCcccHHHHHHhHHH-HcCCCHHHHHHHHHHHHHHcCCH-HHhhCCcccCCHHHHHHHHH
Confidence 1111111110 01123344554432110 10111112334678899999997 46789999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++. .||+|++|++|+++.. |+.++
T Consensus 154 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~-g~~~~ 228 (271)
T PRK13632 154 ASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQ-GKPKE 228 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEEe-cCHHH
Confidence 99999999999999999999999999999999765 379999999999986 7999999999999865 55444
No 190
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=4.8e-38 Score=322.27 Aligned_cols=327 Identities=19% Similarity=0.238 Sum_probs=231.7
Q ss_pred ccEEEEeEEEEeC----CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCC---CCCCeEEEEeceeeccCch
Q psy11936 145 VDIKVENFSISAK----GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK---VPPNIDILYCEQEVVADDL 217 (548)
Q Consensus 145 ~~I~l~nls~~y~----~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~---~~~~g~I~~~~q~i~~~~~ 217 (548)
..|+++||++.|. ...++++|||+|.+||.+||||.||||||-....|+|++-. ..++|+|.|.|.++.....
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred cceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence 3689999999995 46799999999999999999999999999999999985321 2346899999998876554
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh--hhhhcccCCCCH
Q psy11936 218 TAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR--AMQDRATKNFSG 295 (548)
Q Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~--~~~~~~~~~LSG 295 (548)
..++.+-+.. ..++++... ....+-.+...++.+.+.....++...++.++.++|+.+|+.+ ..++.+|++|||
T Consensus 85 ~~lr~iRG~~---I~MIFQEPM-tSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSG 160 (534)
T COG4172 85 RQLRGVRGNK---IGMIFQEPM-TSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSG 160 (534)
T ss_pred HHHhhhcccc---eEEEecccc-cccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCc
Confidence 4443332211 112222110 0111112333444444444455666778889999999999973 467899999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
||||||+||.||+++|++||.||||.+||...+..+.++|+++ ++++++||||+..+.++||||++|.+|++++.+
T Consensus 161 GqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~ 240 (534)
T COG4172 161 GQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETG 240 (534)
T ss_pred chhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecC
Confidence 9999999999999999999999999999999999888888764 789999999999999999999999999999865
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccce
Q psy11936 372 GNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYV 451 (548)
Q Consensus 372 g~y~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~ 451 (548)
..-..|.... .-..+++...+ |.-
T Consensus 241 ~t~~lF~~Pq-------------------------------------------HpYTr~Ll~ae-----------P~g-- 264 (534)
T COG4172 241 TTETLFAAPQ-------------------------------------------HPYTRKLLAAE-----------PSG-- 264 (534)
T ss_pred cHHHHhhCCC-------------------------------------------ChHHHHHHhcC-----------CCC--
Confidence 4433332110 00111121110 100
Q ss_pred eeeecCCCCCCCCCcEEEEeeEEEeCCC----------CcccccCCccC-CCceeEeecC----ccceeeccCCCCCCCC
Q psy11936 452 VKFSFPDPPPLQPPILGLHNVTFAYEGM----------KPLLMSKADED-QGPTELIQKP----REYVVKFSFPDPPPLQ 516 (548)
Q Consensus 452 ~~~~f~~~~~~~~~vL~l~~vs~~Y~~~----------~~ll~~v~~~~-~g~~~~i~~~----~~~~~~~~~~~~~~~~ 516 (548)
.-++.+..++++|++++|...|+-. -..++++||+. .|.|+-|.|- +|||=..|.+.+++.+
T Consensus 265 ---~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G 341 (534)
T COG4172 265 ---DPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQG 341 (534)
T ss_pred ---CCCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCc
Confidence 0011223467899999999999621 12577888874 8999999885 6898888889988774
Q ss_pred CCeeecccee-eeeeeccc
Q psy11936 517 PPILGLHNVT-FAYEGMKP 534 (548)
Q Consensus 517 ~~~~~~~n~~-~~y~~~~~ 534 (548)
.-.+.+.-+. .++=++.|
T Consensus 342 ~I~F~G~~i~~~~~~~mrp 360 (534)
T COG4172 342 EIRFDGQDIDGLSRKEMRP 360 (534)
T ss_pred eEEECCccccccChhhhhh
Confidence 4455555544 33334444
No 191
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-38 Score=317.19 Aligned_cols=217 Identities=21% Similarity=0.297 Sum_probs=161.1
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
+|+++||+++|++ ..+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++.+.......+...
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl--~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI--EKVKSGEIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEECCcCCHHHHHhh
Confidence 5899999999975 3599999999999999999999999999999999985 46788999998887643221111111
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
+ .++.+... ...+..++.+++..... ...........++.++++.+|+.. ..++++.+|||||+|||+|
T Consensus 85 i-------~~v~q~~~--~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~l 153 (269)
T PRK13648 85 I-------GIVFQNPD--NQFVGSIVKYDVAFGLE-NHAVPYDEMHRRVSEALKQVDMLE-RADYEPNALSGGQKQRVAI 153 (269)
T ss_pred e-------eEEEeChH--HhcccccHHHHHHhhHH-hcCCCHHHHHHHHHHHHHHcCCch-hhhCCcccCCHHHHHHHHH
Confidence 1 11111100 01111222222211100 000111122356778999999974 6788999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++.. ||+|++|++|+++.. |+.+.+
T Consensus 154 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~-g~~~~~ 229 (269)
T PRK13648 154 AGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKE-GTPTEI 229 (269)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEEe-cCHHHH
Confidence 99999999999999999999999999999988764 5799999999999975 999999999999865 555543
No 192
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-37 Score=318.40 Aligned_cols=221 Identities=23% Similarity=0.298 Sum_probs=163.2
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC---CCCeEEEEeceeeccCchhHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV---PPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~---~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
..|+++||+++|++..+|+|+||+|.+|+++||+|+|||||||||++|+|..... |.+|.|.+.++.+........
T Consensus 38 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~- 116 (286)
T PRK14275 38 PHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEV- 116 (286)
T ss_pred eEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchH-
Confidence 4689999999998888999999999999999999999999999999999953112 478999998876532110000
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC-CChHHHHHHHHHhCCCC---hhhhhcccCCCCHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA-DSAEPRARRILAGLGFS---RAMQDRATKNFSGGW 297 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~~~L~~lgl~---~~~~~~~~~~LSGGq 297 (548)
. . .....++.+.. ..+..++.+++.... .+..... .....++.++++.+|+. ....++++.+|||||
T Consensus 117 ~-~---~~~i~~v~q~~----~l~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq 187 (286)
T PRK14275 117 L-L---RKKIGMVFQKP----NPFPKSIFDNIAYGP-RLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQ 187 (286)
T ss_pred H-h---hhcEEEECCCC----CCCccCHHHHHHhHH-HhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHH
Confidence 0 0 00111111111 112234555543211 1111111 11234567888888874 235678899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHH
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~ 375 (548)
+|||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||.+++..+||+|++|++|+++.+ |..+
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~-g~~~ 266 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEH-APTA 266 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHH
Confidence 99999999999999999999999999999999999999876 35999999999999999999999999999865 5544
Q ss_pred H
Q psy11936 376 M 376 (548)
Q Consensus 376 ~ 376 (548)
.
T Consensus 267 ~ 267 (286)
T PRK14275 267 Q 267 (286)
T ss_pred H
Confidence 4
No 193
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-37 Score=306.46 Aligned_cols=210 Identities=24% Similarity=0.359 Sum_probs=151.5
Q ss_pred cEEEEeEEEEeCC-ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAKG-NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~-~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.|+++|++++|++ +.+|+|+||+|.+|++++|+|||||||||||++|+|. ..|.+|+|.+.+..+.......+...+
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRF--YDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--cCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 3789999999975 5799999999999999999999999999999999985 367789999888765321111111111
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhC-----------CCChhhhhcccCCC
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGL-----------GFSRAMQDRATKNF 293 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~l-----------gl~~~~~~~~~~~L 293 (548)
....+...+ +..++.+++ ..........++..++..+ |+.. ..++++.+|
T Consensus 80 ~~~~q~~~~-----------~~~tv~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~L 140 (229)
T cd03254 80 GVVLQDTFL-----------FSGTIMENI-------RLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDT-VLGENGGNL 140 (229)
T ss_pred EEecCCchh-----------hhhHHHHHH-------hccCCCCCHHHHHHHHHHhChHHHHHhCcccccC-HhhcCCCcC
Confidence 111111000 011222221 1100111122333333333 3432 345668999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
||||+|||+|||||+.+|++|||||||++||+.++.+|.++|..+ +.|||+||||+.++. .||+|++|++|+++. .
T Consensus 141 S~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~i~~l~~g~~~~-~ 218 (229)
T cd03254 141 SQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIK-NADKILVLDDGKIIE-E 218 (229)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHh-hCCEEEEEeCCeEEE-e
Confidence 999999999999999999999999999999999999999999876 379999999999996 599999999999985 5
Q ss_pred CCHHHHH
Q psy11936 372 GNYSMFK 378 (548)
Q Consensus 372 g~y~~f~ 378 (548)
|+++.+.
T Consensus 219 ~~~~~~~ 225 (229)
T cd03254 219 GTHDELL 225 (229)
T ss_pred CCHHHHH
Confidence 7776654
No 194
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-37 Score=285.11 Aligned_cols=228 Identities=23% Similarity=0.316 Sum_probs=182.2
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
.|.++|+++.||...+|-||+|+...|+.+.|+||||+|||||+|.|. .+..|.+|...+-++.+.......- ..+.
T Consensus 2 sirv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~ln--lle~p~sg~l~ia~~~fd~s~~~~~-k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLN--LLEMPRSGTLNIAGNHFDFSKTPSD-KAIR 78 (242)
T ss_pred ceEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHH--HHhCCCCCeEEecccccccccCccH-HHHH
Confidence 589999999999999999999999999999999999999999999997 4567888888887776654332211 1111
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
...+..+++++. ....+.+++.+++.+.-.....+....+..++.++|.++.+.+ ..|+.|-.|||||+|||+|||
T Consensus 79 ~lr~~vgmvfqq---y~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~-~adr~plhlsggqqqrvaiar 154 (242)
T COG4161 79 DLRRNVGMVFQQ---YNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKP-YADRYPLHLSGGQQQRVAIAR 154 (242)
T ss_pred HHHHhhhhhhhh---hccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhcccc-ccccCceecccchhhhHHHHH
Confidence 112222333221 2233456777776554444445556667788999999999984 689999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMY 381 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~~~ 381 (548)
||++.|++||+||||++|||+-...+.++++++ +.|-++|||..+++..+|+++++|++|+|++. |+-+.|....
T Consensus 155 almmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~-g~a~~ft~p~ 232 (242)
T COG4161 155 ALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQ-GDASCFTEPQ 232 (242)
T ss_pred HHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEee-cchhhccCcc
Confidence 999999999999999999999888888887765 67999999999999999999999999999975 7777776543
No 195
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-37 Score=308.84 Aligned_cols=213 Identities=26% Similarity=0.314 Sum_probs=163.0
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++|+++.|++. +|+|+||+|.+|+++||+|+|||||||||++|+|. ..|..|.|.+.+.++..... ..
T Consensus 1 l~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~--~~p~~G~v~i~g~~~~~~~~--~~----- 70 (235)
T cd03299 1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGF--IKPDSGKILLNGKDITNLPP--EK----- 70 (235)
T ss_pred CeeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--cCCCceEEEECCEEcCcCCh--hH-----
Confidence 4689999999875 89999999999999999999999999999999985 46888999999876642111 00
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
....+..+. ...+...++.+++.... .............+.++++.+|+. ...++++.+|||||+|||+||||
T Consensus 71 --~~i~~~~q~---~~~~~~~t~~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~lara 143 (235)
T cd03299 71 --RDISYVPQN---YALFPHMTVYKNIAYGL-KKRKVDKKEIERKVLEIAEMLGID-HLLNRKPETLSGGEQQRVAIARA 143 (235)
T ss_pred --cCEEEEeec---CccCCCccHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCh-hHHhcCcccCCHHHHHHHHHHHH
Confidence 011111111 11112334444443211 011011122345677899999997 46789999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|+.+|++|||||||++||+.++.++.++|+++ +.|||+||||+.++..+||+|++|++|+++.. |+++.+
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~-~~~~~~ 217 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQV-GKPEEV 217 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe-cCHHHH
Confidence 99999999999999999999999999988764 57999999999999999999999999999864 666554
No 196
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-37 Score=316.34 Aligned_cols=217 Identities=20% Similarity=0.275 Sum_probs=162.3
Q ss_pred cEEEEeEEEEeCC------ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCch-h
Q psy11936 146 DIKVENFSISAKG------NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDL-T 218 (548)
Q Consensus 146 ~I~l~nls~~y~~------~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~-~ 218 (548)
+|+++||+++|++ +.+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|.|.+.+..+..... .
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~~~~G~i~i~g~~i~~~~~~~ 81 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNAL--LIPSEGKVYVDGLDTSDEENLW 81 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEeccccccHH
Confidence 5899999999963 4699999999999999999999999999999999985 46788999998876632110 1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHH
Q psy11936 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWR 298 (548)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqk 298 (548)
.+.. ...++++... ...+..++.+++.... ............++..+++.+|+. ...++++.+|||||+
T Consensus 82 ~~~~-------~i~~v~q~~~--~~~~~~~v~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LS~G~~ 150 (280)
T PRK13633 82 DIRN-------KAGMVFQNPD--NQIVATIVEEDVAFGP-ENLGIPPEEIRERVDESLKKVGMY-EYRRHAPHLLSGGQK 150 (280)
T ss_pred HHhh-------heEEEecChh--hhhccccHHHHHHhhH-hhcCCCHHHHHHHHHHHHHHCCCH-hHhhCCcccCCHHHH
Confidence 1111 1111111110 0011122333322110 000111122345678899999997 467899999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
|||+|||||+.+|+||||||||++||+.++.+|.++|.++ +.|||+||||++++.. ||++++|++|+++.. |+.
T Consensus 151 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~-g~~ 228 (280)
T PRK13633 151 QRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVME-GTP 228 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEEe-cCH
Confidence 9999999999999999999999999999999999998764 5799999999999976 999999999999865 666
Q ss_pred HHH
Q psy11936 375 SMF 377 (548)
Q Consensus 375 ~~f 377 (548)
+++
T Consensus 229 ~~~ 231 (280)
T PRK13633 229 KEI 231 (280)
T ss_pred HHH
Confidence 554
No 197
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-37 Score=310.96 Aligned_cols=216 Identities=20% Similarity=0.296 Sum_probs=160.7
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCC-----CeEEEEeceeeccCch--h
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPP-----NIDILYCEQEVVADDL--T 218 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~-----~g~I~~~~q~i~~~~~--~ 218 (548)
.|+++||+++|+++.+|+++||+|.+|+++||+|+|||||||||++|+|.. .|. .|.|.+.+.++..... .
T Consensus 4 ~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~--~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMN--DIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhccc--CccccCCcccEEEECCEEccccccChH
Confidence 588999999999888999999999999999999999999999999999853 333 5899988876532111 0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC-CChHHHHHHHHHhCCCCh---hhhhcccCCCC
Q psy11936 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA-DSAEPRARRILAGLGFSR---AMQDRATKNFS 294 (548)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~~~L~~lgl~~---~~~~~~~~~LS 294 (548)
.+.. ...++++.. ..+..++.+++.... .+..... ......+..++..+++.. ...++++.+||
T Consensus 82 ~~~~-------~i~~v~q~~----~~~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS 149 (251)
T PRK14249 82 NLRK-------RVGMVFQQP----NPFPKSIFDNVAFGP-RMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALS 149 (251)
T ss_pred Hhhc-------eEEEEecCC----ccCcCcHHHHHhhHH-HhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCC
Confidence 1110 111122111 111224444443111 1111111 112345667788888742 34678999999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
|||+|||+|||||+.+|++|||||||++||+.++.++.++|..+ +.|||+||||++++..+||+|++|++|+++.+ |
T Consensus 150 ~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~-~ 228 (251)
T PRK14249 150 GGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEY-G 228 (251)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEe-C
Confidence 99999999999999999999999999999999999999999876 47999999999999999999999999999876 4
Q ss_pred CHHH
Q psy11936 373 NYSM 376 (548)
Q Consensus 373 ~y~~ 376 (548)
+.++
T Consensus 229 ~~~~ 232 (251)
T PRK14249 229 RTGE 232 (251)
T ss_pred CHHH
Confidence 4443
No 198
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-37 Score=314.51 Aligned_cols=207 Identities=21% Similarity=0.311 Sum_probs=154.8
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCC---CCCCeEEEEeceeeccC--chhH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK---VPPNIDILYCEQEVVAD--DLTA 219 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~---~~~~g~I~~~~q~i~~~--~~~~ 219 (548)
.+|+++||+++|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|...+ .|.+|+|.+.+.++... +...
T Consensus 12 ~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~ 91 (269)
T PRK14259 12 IIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVE 91 (269)
T ss_pred ceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHH
Confidence 469999999999988899999999999999999999999999999999995321 15789999988765321 1111
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCC---hhhhhcccCCCCHH
Q psy11936 220 VESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFS---RAMQDRATKNFSGG 296 (548)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~---~~~~~~~~~~LSGG 296 (548)
+.. ...++++.. ..+..++.+++.... .+.... .....++.++++.+++. ....++++.+||||
T Consensus 92 ~~~-------~i~~v~q~~----~l~~~tv~enl~~~~-~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G 158 (269)
T PRK14259 92 VRR-------RIGMVFQQP----NPFPKSIYENIAFGA-RINGYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGG 158 (269)
T ss_pred Hhh-------ceEEEccCC----ccchhhHHHHHhhhh-hhcCCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHH
Confidence 110 111111111 011124444432111 111111 11234567788888774 23468889999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeC
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQ 364 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~ 364 (548)
|||||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||++++|++
T Consensus 159 ~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 159 QQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEec
Confidence 999999999999999999999999999999999999999876 36999999999999999999999996
No 199
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-37 Score=314.58 Aligned_cols=219 Identities=24% Similarity=0.348 Sum_probs=163.5
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCC---CCCCeEEEEeceeeccCch--hHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK---VPPNIDILYCEQEVVADDL--TAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~---~~~~g~I~~~~q~i~~~~~--~~~ 220 (548)
+|+++|++++|+++.+|+|+||+|.+|+++||+|+||||||||+++|+|...+ .|.+|.|.+.+.++..... ..+
T Consensus 25 ~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~ 104 (272)
T PRK14236 25 ALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAEL 104 (272)
T ss_pred EEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHH
Confidence 69999999999888899999999999999999999999999999999996321 1468999998877642111 111
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC-CChHHHHHHHHHhCCCCh---hhhhcccCCCCHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA-DSAEPRARRILAGLGFSR---AMQDRATKNFSGG 296 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGG 296 (548)
.. ...++.+.. ..+..++.+++.... .+..... .....++.++++.+++.. ...++.+.+||||
T Consensus 105 ~~-------~i~~v~q~~----~l~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 172 (272)
T PRK14236 105 RR-------RVGMVFQRP----NPFPKSIYENVVYGL-RLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGG 172 (272)
T ss_pred hc-------cEEEEecCC----ccCcccHHHHHHHHH-HhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHH
Confidence 11 111111110 111224444442111 1111100 112345778889999853 3467889999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
|+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~-g~~ 251 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEY-GDT 251 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEec-CCH
Confidence 999999999999999999999999999999999999999876 47999999999999999999999999999865 555
Q ss_pred HHH
Q psy11936 375 SMF 377 (548)
Q Consensus 375 ~~f 377 (548)
+++
T Consensus 252 ~~~ 254 (272)
T PRK14236 252 DTL 254 (272)
T ss_pred HHH
Confidence 554
No 200
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-37 Score=315.44 Aligned_cols=220 Identities=19% Similarity=0.319 Sum_probs=163.5
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCC---CCCCeEEEEeceeeccCchhHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK---VPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~---~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
.+|+++||+++|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|...+ .|.+|+|.+.+..+........
T Consensus 38 ~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~- 116 (285)
T PRK14254 38 TVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPV- 116 (285)
T ss_pred ceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchH-
Confidence 469999999999888899999999999999999999999999999999986321 1578999998876532110000
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh---hhhhcccCCCCHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR---AMQDRATKNFSGGWR 298 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGqk 298 (548)
. . .....++.+.. ..+..++.+++.... .+.... .....++.++++.+|+.. ...++++.+||||||
T Consensus 117 ~-~---~~~i~~v~q~~----~l~~~tv~enl~~~~-~~~~~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~ 186 (285)
T PRK14254 117 A-L---RRRIGMVFQKP----NPFPKSIYDNVAYGL-KIQGYD-GDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQ 186 (285)
T ss_pred h-h---hccEEEEecCC----ccCcCCHHHHHHHHH-HHcCCc-HHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHH
Confidence 0 0 00111111111 111224444443211 111111 123456788999999852 356888999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEE-EEeCCEEEEEcCCHH
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEII-HLDQQKLYYYKGNYS 375 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi-~L~~G~i~~~~g~y~ 375 (548)
|||+|||||+.+|+||||||||++||+.++.+|.++|.++ +.|||+||||++++..+||+++ +|++|+++.+ |+..
T Consensus 187 qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~-g~~~ 265 (285)
T PRK14254 187 QRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEF-DDTD 265 (285)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEe-CCHH
Confidence 9999999999999999999999999999999999999877 4799999999999999999975 6799999875 5544
Q ss_pred H
Q psy11936 376 M 376 (548)
Q Consensus 376 ~ 376 (548)
.
T Consensus 266 ~ 266 (285)
T PRK14254 266 K 266 (285)
T ss_pred H
Confidence 3
No 201
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.8e-38 Score=305.43 Aligned_cols=215 Identities=24% Similarity=0.365 Sum_probs=179.5
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
.|++++|+++||++.+++|+||++++|++.|++|+|||||||++|+|.|. ..|++|.|.++++++...
T Consensus 2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILgl--le~~~G~I~~~g~~~~~~---------- 69 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGL--LEPTEGEITWNGGPLSQE---------- 69 (300)
T ss_pred ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhcc--CCccCceEEEcCcchhhh----------
Confidence 58999999999999999999999999999999999999999999999974 578899999999876432
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
...+.+++++... .+..+++.+.+.. +..+.++...+...++..+|+++++.. ...+++.+||-|++|++.+..
T Consensus 70 -~~~rIGyLPEERG---Ly~k~tv~dql~y-la~LkGm~~~e~~~~~~~wLer~~i~~-~~~~kIk~LSKGnqQKIQfis 143 (300)
T COG4152 70 -IKNRIGYLPEERG---LYPKMTVEDQLKY-LAELKGMPKAEIQKKLQAWLERLEIVG-KKTKKIKELSKGNQQKIQFIS 143 (300)
T ss_pred -hhhhcccChhhhc---cCccCcHHHHHHH-HHHhcCCcHHHHHHHHHHHHHhccccc-cccchHHHhhhhhhHHHHHHH
Confidence 1223444444332 2334566555532 345555666667788999999999985 468899999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKK 379 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~ 379 (548)
+++++|++||||||+|||||.+.+.|.+.+.++ +.|||++||.|+-+.++||++++|+.|+.+.| |+....++
T Consensus 144 aviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~-G~v~~ir~ 219 (300)
T COG4152 144 AVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLY-GTVEDIRR 219 (300)
T ss_pred HHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEe-ccHHHHHH
Confidence 999999999999999999999999999987654 68999999999999999999999999999976 66655443
No 202
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.9e-38 Score=328.60 Aligned_cols=204 Identities=25% Similarity=0.326 Sum_probs=158.7
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc----hhHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD----LTAVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~----~~~~~ 221 (548)
+|++ ||+++|++..+ |+||+|.+|++++|+|||||||||||++|+|. ..|.+|.|.+.+..+.... .....
T Consensus 1 ~l~~-~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl--~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 1 MLEL-NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGL--TRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred CeEE-EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEEccccccccccchhh
Confidence 3677 99999987543 89999999999999999999999999999985 4678899999887653211 00000
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
+...++++. ...++..++.+++.... . .....++.++|+.+|+.. ..++++.+|||||||||
T Consensus 76 -------~~i~~v~q~---~~l~~~~tv~enl~~~~---~----~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGq~qRv 137 (352)
T PRK11144 76 -------RRIGYVFQD---ARLFPHYKVRGNLRYGM---A----KSMVAQFDKIVALLGIEP-LLDRYPGSLSGGEKQRV 137 (352)
T ss_pred -------CCEEEEcCC---cccCCCCcHHHHHHhhh---h----hhhHHHHHHHHHHcCCch-hhhCCcccCCHHHHHHH
Confidence 111122211 11222345555543211 1 123457889999999974 67999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
+|||||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|+++.++.
T Consensus 138 alaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~ 212 (352)
T PRK11144 138 AIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGP 212 (352)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecC
Confidence 9999999999999999999999999999998888754 5799999999999999999999999999987643
No 203
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-37 Score=314.51 Aligned_cols=218 Identities=20% Similarity=0.311 Sum_probs=161.0
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCC-C--CCCeEEEEeceeeccCch--hH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK-V--PPNIDILYCEQEVVADDL--TA 219 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~-~--~~~g~I~~~~q~i~~~~~--~~ 219 (548)
.+|+++||+++|++..+|+|+||+|.+|+++||+|+|||||||||++|+|.... . |.+|+|.+.+..+..... ..
T Consensus 23 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 102 (271)
T PRK14238 23 VVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEE 102 (271)
T ss_pred eEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHH
Confidence 369999999999988899999999999999999999999999999999995321 1 578999998876532111 11
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCC---hHHHHHHHHHhCCCC---hhhhhcccCCC
Q psy11936 220 VESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADS---AEPRARRILAGLGFS---RAMQDRATKNF 293 (548)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~---~~~~~~~~L~~lgl~---~~~~~~~~~~L 293 (548)
+.. ...++++.. ..+..++.+++.... ...+... ....+.+++..+++. ....++++.+|
T Consensus 103 ~~~-------~i~~v~q~~----~~~~~tv~eni~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~L 168 (271)
T PRK14238 103 LRT-------NVGMVFQKP----NPFPKSIYDNVTYGP---KIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGL 168 (271)
T ss_pred Hhh-------hEEEEecCC----ccccccHHHHHHHHH---HhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccC
Confidence 110 111111111 111224444432211 1111111 133456677777542 13467889999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
||||+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.+
T Consensus 169 SgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~- 247 (271)
T PRK14238 169 SGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEY- 247 (271)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEe-
Confidence 999999999999999999999999999999999999999999876 47999999999999999999999999999876
Q ss_pred CCHHHH
Q psy11936 372 GNYSMF 377 (548)
Q Consensus 372 g~y~~f 377 (548)
|+.+++
T Consensus 248 g~~~~~ 253 (271)
T PRK14238 248 DDTDKI 253 (271)
T ss_pred CCHHHH
Confidence 555544
No 204
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=8.2e-38 Score=291.33 Aligned_cols=213 Identities=23% Similarity=0.318 Sum_probs=163.3
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|.+.+|.++|+..+. .++++|..||+++|+|||||||||||++|+|. ..|.+|.|.+++++........
T Consensus 2 l~L~~V~~~y~~~~~--~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF--~~P~~G~i~i~g~d~t~~~P~~------- 70 (231)
T COG3840 2 LALDDVRFSYGHLPM--RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGF--ETPASGEILINGVDHTASPPAE------- 70 (231)
T ss_pred ccccceEEeeCcceE--EEEEeecCCcEEEEECCCCccHHHHHHHHHhc--cCCCCceEEEcCeecCcCCccc-------
Confidence 668899999987543 56899999999999999999999999999985 5899999999999886543211
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcC-CCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG-ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
+...++++. .+.+...++.+++..-.. -.+. ....++++..++..+|+.. ..++.|.+|||||||||+|||
T Consensus 71 --RPVSmlFQE---nNLFaHLtV~qNigLGl~--P~LkL~a~~r~~v~~aa~~vGl~~-~~~RLP~~LSGGqRQRvALAR 142 (231)
T COG3840 71 --RPVSMLFQE---NNLFAHLTVAQNIGLGLS--PGLKLNAEQREKVEAAAAQVGLAG-FLKRLPGELSGGQRQRVALAR 142 (231)
T ss_pred --CChhhhhhc---cccchhhhhhhhhcccCC--cccccCHHHHHHHHHHHHHhChhh-HhhhCccccCchHHHHHHHHH
Confidence 011122221 222333444443321000 0000 1234567889999999985 679999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKK 379 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~ 379 (548)
+|+.+-+|||||||+++|||.-+..+..++.+. +.|++||||..+.+.+++++++++++|+|.+ .|..++|..
T Consensus 143 clvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~-~g~~~~~~~ 219 (231)
T COG3840 143 CLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAA-QGSTQELLS 219 (231)
T ss_pred HHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEe-eccHHHHhc
Confidence 999999999999999999999888777776654 5799999999999999999999999999985 566666543
No 205
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-37 Score=349.78 Aligned_cols=223 Identities=19% Similarity=0.266 Sum_probs=167.1
Q ss_pred ccEEEEeEEEEeCC-----------ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeec
Q psy11936 145 VDIKVENFSISAKG-----------NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVV 213 (548)
Q Consensus 145 ~~I~l~nls~~y~~-----------~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~ 213 (548)
.+|+++||++.|+. ..+|+||||+|.+|+++||+|+||||||||+++|+|. ..|.+|+|.+.+.++.
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl--~~p~~G~I~~~g~~i~ 389 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRL--VESQGGEIIFNGQRID 389 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcC--CCCCCcEEEECCEECC
Confidence 46999999999962 4699999999999999999999999999999999985 3678999999988764
Q ss_pred cCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhc-CCCChHHHHHHHHHhCCCChhhhhcccCC
Q psy11936 214 ADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI-GADSAEPRARRILAGLGFSRAMQDRATKN 292 (548)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~~~~~~L~~lgl~~~~~~~~~~~ 292 (548)
.......... .....++++... .......++.+++..... +... .......++.++|+.+||.....++++.+
T Consensus 390 ~~~~~~~~~~----~~~i~~v~Q~~~-~~l~~~~tv~~~l~~~~~-~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~ 463 (623)
T PRK10261 390 TLSPGKLQAL----RRDIQFIFQDPY-ASLDPRQTVGDSIMEPLR-VHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHE 463 (623)
T ss_pred cCCHHHHHHh----cCCeEEEecCch-hhcCCCCCHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCccc
Confidence 3221111100 001122222110 011223445555432211 1111 01123457889999999975567999999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCeEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG----WKKTLLIVSHDQSFLDNVCNEIIHLDQQKLY 368 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~----~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~ 368 (548)
|||||||||+|||||+.+|+||||||||++||+.++..+.++|.+ .+.|||+||||++++..+||+|++|++|+++
T Consensus 464 LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv 543 (623)
T PRK10261 464 FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIV 543 (623)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999998854 3679999999999999999999999999998
Q ss_pred EEcCCHHH
Q psy11936 369 YYKGNYSM 376 (548)
Q Consensus 369 ~~~g~y~~ 376 (548)
.. |..++
T Consensus 544 ~~-g~~~~ 550 (623)
T PRK10261 544 EI-GPRRA 550 (623)
T ss_pred Ee-cCHHH
Confidence 65 55444
No 206
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.4e-38 Score=312.24 Aligned_cols=219 Identities=23% Similarity=0.258 Sum_probs=168.4
Q ss_pred cEEEEeEEEEeCCc------------------------eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCC
Q psy11936 146 DIKVENFSISAKGN------------------------DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPP 201 (548)
Q Consensus 146 ~I~l~nls~~y~~~------------------------~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~ 201 (548)
.|+++||++-||.+ .-++|+||+|+.||++.|.|-||||||||+|||.++ ..|+
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrL--iept 81 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRL--IEPT 81 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhcc--CCCC
Confidence 36777888777642 137899999999999999999999999999999974 5789
Q ss_pred CeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCC
Q psy11936 202 NIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGF 281 (548)
Q Consensus 202 ~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl 281 (548)
.|+|.+.+.++...+...+..+.. ....+++|.. ..++..++.++...- -++......+.++++.++|+.+||
T Consensus 82 ~G~ilv~g~di~~~~~~~Lr~~Rr---~~~sMVFQ~F---aLlPhrtVl~Nv~fG-Lev~Gv~~~er~~~a~~~l~~VgL 154 (386)
T COG4175 82 RGEILVDGKDIAKLSAAELRELRR---KKISMVFQSF---ALLPHRTVLENVAFG-LEVQGVPKAEREERALEALELVGL 154 (386)
T ss_pred CceEEECCcchhcCCHHHHHHHHh---hhhhhhhhhh---ccccchhHhhhhhcc-eeecCCCHHHHHHHHHHHHHHcCc
Confidence 999999999887666554443211 1223333322 123344444443211 112333344567789999999999
Q ss_pred ChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH----HHHHHHHHhhcCCeEEEEecCHHHHHhhcC
Q psy11936 282 SRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA----VIWLDNYLQGWKKTLLIVSHDQSFLDNVCN 357 (548)
Q Consensus 282 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s----~~~L~~~L~~~~~TvIiVSHD~~~l~~vad 357 (548)
.. +.+++|++|||||||||.|||||+.+|+|||+|||+|+|||-- +..|.++-.++++||||||||++++.++.|
T Consensus 155 ~~-~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~ 233 (386)
T COG4175 155 EG-YADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGD 233 (386)
T ss_pred hh-hhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccc
Confidence 84 6799999999999999999999999999999999999999954 455555556678999999999999999999
Q ss_pred EEEEEeCCEEEEEcCCH
Q psy11936 358 EIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 358 rIi~L~~G~i~~~~g~y 374 (548)
||.+|.+|+|+..+.+-
T Consensus 234 rIaimkdG~ivQ~Gtp~ 250 (386)
T COG4175 234 RIAIMKDGEIVQVGTPE 250 (386)
T ss_pred eEEEecCCeEEEeCCHH
Confidence 99999999999875443
No 207
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.9e-38 Score=306.06 Aligned_cols=204 Identities=25% Similarity=0.314 Sum_probs=153.5
Q ss_pred eEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchh-HHHHHHHhhHH
Q psy11936 151 NFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLT-AVESVLKADVK 229 (548)
Q Consensus 151 nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~-~~~~~~~~~~~ 229 (548)
||+++|+++.+ |+||+|.+ +++||+|||||||||||++|+|. ..|.+|+|.+.+.++...... ..... ..
T Consensus 5 ~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~~~~----~~ 75 (214)
T cd03297 5 DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGL--EKPDGGTIVLNGTVLFDSRKKINLPPQ----QR 75 (214)
T ss_pred eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEecccccchhhhhhH----hh
Confidence 89999998766 99999999 99999999999999999999985 467889999888765321100 00000 00
Q ss_pred HHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHcc
Q psy11936 230 RTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYI 309 (548)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~ 309 (548)
...++.+. .......++.+++.... ..........++.++++.+|+. ...++++.+|||||||||+|||||+.
T Consensus 76 ~i~~~~q~---~~~~~~~t~~~~l~~~~---~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~ 148 (214)
T cd03297 76 KIGLVFQQ---YALFPHLNVRENLAFGL---KRKRNREDRISVDELLDLLGLD-HLLNRYPAQLSGGEKQRVALARALAA 148 (214)
T ss_pred cEEEEecC---CccCCCCCHHHHHHHHH---hhCCHHHHHHHHHHHHHHcCCH-hHhhcCcccCCHHHHHHHHHHHHHhc
Confidence 11111111 11112334444442211 1111112345678899999997 45788999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 310 EPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 310 ~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||++++|++|+++..
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 213 (214)
T cd03297 149 QPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYI 213 (214)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEec
Confidence 99999999999999999999999988764 57999999999999999999999999998753
No 208
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-37 Score=313.20 Aligned_cols=219 Identities=19% Similarity=0.307 Sum_probs=159.9
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeecc-CchhHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVA-DDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~-~~~~~~~~~~ 224 (548)
+|.++|++++|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.|.-... .+.......
T Consensus 10 ~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~--~~~~~G~v~~~G~~~~~g~~~~~~~~~- 86 (257)
T PRK14246 10 VFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRL--IEIYDSKIKVDGKVLYFGKDIFQIDAI- 86 (257)
T ss_pred heeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCcCceeEcCEEEECCcccccCCHH-
Confidence 58999999999999999999999999999999999999999999999985 35666655544321110 010000000
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCC---ChHHHHHHHHHhCCCCh---hhhhcccCCCCHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD---SAEPRARRILAGLGFSR---AMQDRATKNFSGGWR 298 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~---~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGqk 298 (548)
.......+..+.. ......++.+++.... ...+.. ....++.++++.+|+.. ...++.+..|||||+
T Consensus 87 -~~~~~i~~~~q~~---~~~~~~tv~~nl~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 -KLRKEVGMVFQQP---NPFPHLSIYDNIAYPL---KSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQ 159 (257)
T ss_pred -HHhcceEEEccCC---ccCCCCcHHHHHHHHH---HhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHH
Confidence 0001111222111 1122335555543211 111111 22356788999999852 346788999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
||++|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||++++|++|+++.+++..
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~ 237 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSN 237 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999876 379999999999999999999999999999875443
No 209
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.8e-37 Score=303.88 Aligned_cols=205 Identities=23% Similarity=0.284 Sum_probs=157.3
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
++++||+++|+. ++.++||+|.+|+++||+||||||||||+++|+|. ..|.+|+|.+.+.++.... ....
T Consensus 1 ~~~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~--~~~~---- 70 (213)
T TIGR01277 1 LALDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGF--IEPASGSIKVNDQSHTGLA--PYQR---- 70 (213)
T ss_pred CeEEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCEEcccCC--hhcc----
Confidence 468999999974 57899999999999999999999999999999985 4678899999887653211 1100
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcC-CCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG-ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
...++.+. ...+...+..+++..... .... ......++.++++.+|+. ...++.+.+|||||+|||+|||
T Consensus 71 ---~i~~v~q~---~~~~~~~t~~en~~~~~~--~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~lar 141 (213)
T TIGR01277 71 ---PVSMLFQE---NNLFAHLTVRQNIGLGLH--PGLKLNAEQQEKVVDAAQQVGIA-DYLDRLPEQLSGGQRQRVALAR 141 (213)
T ss_pred ---ceEEEecc---CccCCCCcHHHHHHhHhh--ccCCccHHHHHHHHHHHHHcCcH-HHhhCCcccCCHHHHHHHHHHH
Confidence 11111111 111223455555432111 0011 112345678899999997 4578999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||++++|++|++...
T Consensus 142 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~ 210 (213)
T TIGR01277 142 CLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVV 210 (213)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEe
Confidence 999999999999999999999999998888764 57999999999999999999999999999865
No 210
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-37 Score=310.73 Aligned_cols=219 Identities=19% Similarity=0.307 Sum_probs=162.5
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC-C--CCeEEEEeceeeccCch--hHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV-P--PNIDILYCEQEVVADDL--TAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~-~--~~g~I~~~~q~i~~~~~--~~~ 220 (548)
.|+++||+++|++..+|+|+||+|.+|+++||+|+|||||||||++|+|...+. | .+|+|.+.++++..... ..+
T Consensus 7 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 86 (259)
T PRK14260 7 AIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRL 86 (259)
T ss_pred eEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhh
Confidence 589999999999888999999999999999999999999999999999963211 2 47999998876632110 111
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHh-cCCCChHHHHHHHHHhCCCCh---hhhhcccCCCCHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA-IGADSAEPRARRILAGLGFSR---AMQDRATKNFSGG 296 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGG 296 (548)
.. ...++.+.. ..+..++.+++..... ... ........++.+++..+|+.. ...++++.+||||
T Consensus 87 ~~-------~i~~v~q~~----~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G 154 (259)
T PRK14260 87 RR-------QIGMVFQRP----NPFPMSIYENVAYGVR-ISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGG 154 (259)
T ss_pred hh-------heEEEeccc----ccCCccHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHH
Confidence 10 111111111 1122344444422111 110 011122356778899998842 3567889999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEe-----CCEEEE
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLD-----QQKLYY 369 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~-----~G~i~~ 369 (548)
|+|||+|||||+.+|++|||||||++||+.+..++.++|..+ +.|||+||||++++..+||++++|+ +|+++.
T Consensus 155 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 234 (259)
T PRK14260 155 QQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVE 234 (259)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEE
Confidence 999999999999999999999999999999999999999875 4799999999999999999999998 599987
Q ss_pred EcCCHHHH
Q psy11936 370 YKGNYSMF 377 (548)
Q Consensus 370 ~~g~y~~f 377 (548)
. |+..++
T Consensus 235 ~-~~~~~~ 241 (259)
T PRK14260 235 F-GVTTQI 241 (259)
T ss_pred e-CCHHHH
Confidence 5 554443
No 211
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=8.6e-38 Score=311.13 Aligned_cols=202 Identities=22% Similarity=0.333 Sum_probs=151.3
Q ss_pred EEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHH
Q psy11936 154 ISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTEL 233 (548)
Q Consensus 154 ~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l 233 (548)
+.|+.+++|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+..+.... .... ....+
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl--~~p~~G~i~~~g~~~~~~~-~~~~-------~~i~~ 98 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGL--LQPTSGEVRVAGLVPWKRR-KKFL-------RRIGV 98 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--cCCCceEEEECCEEccccc-hhhc-------ccEEE
Confidence 567778899999999999999999999999999999999985 4678899998876532111 0000 00111
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCE
Q psy11936 234 LAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTL 313 (548)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~l 313 (548)
+.+ .........++.+++... ..+..........++..+++.+|+.. ..++++.+|||||+||++|||||+.+|+|
T Consensus 99 ~~~--~~~~~~~~~tv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrl~la~al~~~p~l 174 (236)
T cd03267 99 VFG--QKTQLWWDLPVIDSFYLL-AAIYDLPPARFKKRLDELSELLDLEE-LLDTPVRQLSLGQRMRAEIAAALLHEPEI 174 (236)
T ss_pred EcC--CccccCCCCcHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 110 000111223444443221 11111111223446778899999974 56889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 314 LLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 314 LLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
|||||||++||+.++.+|.++|.++ +.|||+||||++++..+||+|++|++|+++.
T Consensus 175 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 234 (236)
T cd03267 175 LFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLY 234 (236)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 9999999999999999999999876 4799999999999999999999999999875
No 212
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.4e-37 Score=302.28 Aligned_cols=203 Identities=25% Similarity=0.321 Sum_probs=150.3
Q ss_pred EEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhH
Q psy11936 149 VENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADV 228 (548)
Q Consensus 149 l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~ 228 (548)
++||++.|+++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+..+............ .
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~~~~---~ 75 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLL--EKFDSGQVYLNGKETPPLNSKKASKFR---R 75 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcC--CCCCCeEEEECCEEccccchhhHHHHH---H
Confidence 46899999988999999999999999999999999999999999985 467889999988765311110000000 0
Q ss_pred HHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHc
Q psy11936 229 KRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALY 308 (548)
Q Consensus 229 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~ 308 (548)
+...+..+.. ......++.+++.... ............++.++++.+|+. ...++++.+|||||+||++|||||+
T Consensus 76 ~~i~~~~q~~---~~~~~~t~~e~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qr~~laral~ 150 (206)
T TIGR03608 76 EKLGYLFQNF---ALIENETVEENLDLGL-KYKKLSKKEKREKKKEALEKVGLN-LKLKQKIYELSGGEQQRVALARAIL 150 (206)
T ss_pred hCeeEEecch---hhccCCcHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCch-hhhcCChhhCCHHHHHHHHHHHHHH
Confidence 0111111111 1112234444443211 111111122345678899999996 4568899999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEE
Q psy11936 309 IEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHL 362 (548)
Q Consensus 309 ~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L 362 (548)
.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++ .+||+|++|
T Consensus 151 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~~d~i~~l 206 (206)
T TIGR03608 151 KDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA-KQADRVIEL 206 (206)
T ss_pred cCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-hhcCEEEeC
Confidence 999999999999999999999999999875 57999999999987 479999875
No 213
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=2.2e-37 Score=308.26 Aligned_cols=214 Identities=28% Similarity=0.358 Sum_probs=163.0
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++|++++|+++.+|+|+||+|.+|+++||+|+||||||||+++|+|. ..|.+|+|.+.+..+..... ..
T Consensus 1 i~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~--~~~~~G~i~i~g~~~~~~~~--~~----- 71 (237)
T TIGR00968 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGL--EQPDSGRIRLNGQDATRVHA--RD----- 71 (237)
T ss_pred CEEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEEcCcCCh--hh-----
Confidence 4689999999988999999999999999999999999999999999985 46788999988876532111 00
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
....+.++.. ..+...+..+++.... .............+.++++.+++. ...++.+.+|||||+||++||||
T Consensus 72 --~~i~~~~q~~---~~~~~~t~~enl~~~~-~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qrl~lara 144 (237)
T TIGR00968 72 --RKIGFVFQHY---ALFKHLTVRDNIAFGL-EIRKHPKAKIKARVEELLELVQLE-GLGDRYPNQLSGGQRQRVALARA 144 (237)
T ss_pred --cCEEEEecCh---hhccCCcHHHHHHhHH-HhcCCCHHHHHHHHHHHHHHcCCH-hHhhCChhhCCHHHHHHHHHHHH
Confidence 0111111111 1111234444442111 111111112245677899999997 46789999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|+.+|++|||||||++||+.++.++.++|.++ +.|||+|||+++++..+||+|++|++|+++.. |+.+.+
T Consensus 145 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~-~~~~~~ 218 (237)
T TIGR00968 145 LAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQI-GSPDEV 218 (237)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEe-cCHHHH
Confidence 99999999999999999999999999999764 57999999999999999999999999999865 555544
No 214
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.9e-37 Score=304.10 Aligned_cols=199 Identities=22% Similarity=0.286 Sum_probs=156.1
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++|++++|+++.+|+++||+|.+|++++|+|+|||||||||++|+|. ..|.+|+|.+.+..+.... ..
T Consensus 11 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~g~~i~~~~---~~---- 81 (214)
T PRK13543 11 LLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGL--LHVESGQIQIDGKTATRGD---RS---- 81 (214)
T ss_pred eEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCC--CCCCCeeEEECCEEccchh---hh----
Confidence 58999999999988899999999999999999999999999999999985 4678899999887653210 00
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
....++.+. .......+..+++.... ..........+.+++..+|+.. ..++++.+|||||+|||+|||
T Consensus 82 ---~~i~~~~q~---~~~~~~~t~~e~l~~~~----~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~lar 150 (214)
T PRK13543 82 ---RFMAYLGHL---PGLKADLSTLENLHFLC----GLHGRRAKQMPGSALAIVGLAG-YEDTLVRQLSAGQKKRLALAR 150 (214)
T ss_pred ---hceEEeecC---cccccCCcHHHHHHHHH----HhcCCcHHHHHHHHHHHcCChh-hccCChhhCCHHHHHHHHHHH
Confidence 001111111 01111224444432211 1112234556788999999974 568899999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeC
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQ 364 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~ 364 (548)
||+.+|++|||||||++||+.++.++.++|..+ +.|||+||||++++..+||++++|+.
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 151 LWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999999999999765 68999999999999999999999863
No 215
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-37 Score=313.69 Aligned_cols=217 Identities=18% Similarity=0.234 Sum_probs=163.3
Q ss_pred cEEEEeEEEEeCC---ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKG---NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~---~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
+|+++||+++|++ ..+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.++.+.......+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~i~~~~~~~~~~ 81 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGL--FEEFEGKVKIDGELLTAENVWNLRR 81 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCCEEEECCEECCcCCHHHHhc
Confidence 5899999999974 3599999999999999999999999999999999985 4688899999888764322111111
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
...++.+... ...+..++.+++..... ...........++..+++.+|+. ...++++.+|||||+|||+
T Consensus 82 -------~i~~v~q~~~--~~~~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~ 150 (277)
T PRK13642 82 -------KIGMVFQNPD--NQFVGATVEDDVAFGME-NQGIPREEMIKRVDEALLAVNML-DFKTREPARLSGGQKQRVA 150 (277)
T ss_pred -------ceEEEEECHH--HhhccCCHHHHHHhhHH-HcCCCHHHHHHHHHHHHHHCCCH-hHhhCCcccCCHHHHHHHH
Confidence 1111111110 01223344444422111 00111112235678899999996 4678899999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|||||+.+|+||||||||++||+.++.+|.++|.++ +.|||+||||++++. .||+|++|++|+++.. |+.+++
T Consensus 151 lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~-g~~~~~ 227 (277)
T PRK13642 151 VAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIKE-AAPSEL 227 (277)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEe-CCHHHH
Confidence 999999999999999999999999999999988654 679999999999997 5999999999999865 565554
No 216
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=3.1e-37 Score=310.28 Aligned_cols=215 Identities=20% Similarity=0.309 Sum_probs=160.3
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCC----CCeEEEEeceeeccCchhHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVP----PNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~----~~g~I~~~~q~i~~~~~~~~~ 221 (548)
.|+++||+++| ++.+|+|+||+|.+|+++||+|+|||||||||++|+|.. .| .+|+|.+.+.++..... ..
T Consensus 4 ~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~~~~~~~~G~i~~~g~~i~~~~~--~~ 78 (254)
T PRK10418 4 QIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGIL--PAGVRQTAGRVLLDGKPVAPCAL--RG 78 (254)
T ss_pred EEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCCCcCCEEEECCeecccccc--cc
Confidence 58999999999 668999999999999999999999999999999999853 34 78999988876531100 00
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh--hhhcccCCCCHHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA--MQDRATKNFSGGWRM 299 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~--~~~~~~~~LSGGqkq 299 (548)
....++++.... ......+..+++.. .+...+......++.++++.+|+... ..++.+.+|||||+|
T Consensus 79 -------~~i~~v~q~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~q 147 (254)
T PRK10418 79 -------RKIATIMQNPRS-AFNPLHTMHTHARE---TCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQ 147 (254)
T ss_pred -------ceEEEEecCCcc-ccCccccHHHHHHH---HHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHH
Confidence 001111111000 00001122222211 11112222234678889999999742 468899999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHH
Q psy11936 300 RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 300 RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~ 375 (548)
||+|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||++++|++|+++. .|+.+
T Consensus 148 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~-~~~~~ 226 (254)
T PRK10418 148 RMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVE-QGDVE 226 (254)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEE-ecCHH
Confidence 999999999999999999999999999999988888764 5799999999999999999999999999985 46655
Q ss_pred HH
Q psy11936 376 MF 377 (548)
Q Consensus 376 ~f 377 (548)
++
T Consensus 227 ~~ 228 (254)
T PRK10418 227 TL 228 (254)
T ss_pred HH
Confidence 54
No 217
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.9e-37 Score=301.84 Aligned_cols=199 Identities=22% Similarity=0.317 Sum_probs=154.4
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+|+||||||||+++|+|. ..|.+|.|.+.+..+.... ....
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~p~~G~v~~~g~~~~~~~-~~~~---- 73 (204)
T PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGL--ARPDAGEVLWQGEPIRRQR-DEYH---- 73 (204)
T ss_pred CeEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEEcccch-HHhh----
Confidence 47899999999988899999999999999999999999999999999985 4678899999887653211 0000
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
....++.+. .......++.+++.... .+ .+ .....++.++++.+|+.. ..++++.+|||||+|||+|||
T Consensus 74 ---~~~~~~~~~---~~~~~~~tv~e~l~~~~-~~--~~-~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrl~la~ 142 (204)
T PRK13538 74 ---QDLLYLGHQ---PGIKTELTALENLRFYQ-RL--HG-PGDDEALWEALAQVGLAG-FEDVPVRQLSAGQQRRVALAR 142 (204)
T ss_pred ---hheEEeCCc---cccCcCCcHHHHHHHHH-Hh--cC-ccHHHHHHHHHHHcCCHH-HhhCChhhcCHHHHHHHHHHH
Confidence 011111111 01112235555543211 11 11 134567889999999974 568899999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEE
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHL 362 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L 362 (548)
||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||..+++.+..|++++
T Consensus 143 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 143 LWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999999999999876 579999999999999977888877
No 218
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-37 Score=310.49 Aligned_cols=223 Identities=22% Similarity=0.292 Sum_probs=161.6
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCC---CCeEEEEeceeeccCchh-HH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVP---PNIDILYCEQEVVADDLT-AV 220 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~---~~g~I~~~~q~i~~~~~~-~~ 220 (548)
..|+++||+++|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|...+.| .+|+|.+.++.+...+.. ..
T Consensus 15 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~ 94 (265)
T PRK14252 15 QKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDP 94 (265)
T ss_pred ceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCH
Confidence 35899999999998899999999999999999999999999999999999643223 589999887654311000 00
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHhCCCCh---hhhhcccCCCCHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD-SAEPRARRILAGLGFSR---AMQDRATKNFSGG 296 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~-~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGG 296 (548)
.. . .....+..+.. ..+..++.+++..... ....... ..+.++..++..+++.. ...++.+.+||||
T Consensus 95 ~~-~---~~~i~~~~q~~----~~~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G 165 (265)
T PRK14252 95 IE-V---RMRISMVFQKP----NPFPKSIFENVAYGLR-IRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGG 165 (265)
T ss_pred HH-H---hccEEEEccCC----cCCcchHHHHHHhHHH-HcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHH
Confidence 00 0 00111111110 1112244444421111 1111111 12356677888887742 3457889999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
|+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.++...
T Consensus 166 ~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~ 245 (265)
T PRK14252 166 QQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATD 245 (265)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999875 369999999999999999999999999999875443
Q ss_pred HH
Q psy11936 375 SM 376 (548)
Q Consensus 375 ~~ 376 (548)
+.
T Consensus 246 ~~ 247 (265)
T PRK14252 246 TI 247 (265)
T ss_pred HH
Confidence 33
No 219
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=4.4e-37 Score=305.58 Aligned_cols=208 Identities=24% Similarity=0.366 Sum_probs=150.4
Q ss_pred EEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 147 IKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 147 I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
|+++||+++|++ ..+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+.++...+...+...+
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~~~~i 78 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF--YVPENGRVLVDGHDLALADPAWLRRQV 78 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--cCCCCCEEEECCeehHhcCHHHHhhcE
Confidence 468999999963 5799999999999999999999999999999999985 367889999988765322211111111
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHH---------HHHHHHhC--CCChhhhhcccCCC
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPR---------ARRILAGL--GFSRAMQDRATKNF 293 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~---------~~~~L~~l--gl~~~~~~~~~~~L 293 (548)
.++++.. ..+..++.+++.. ......... +.+++..+ ++.. ..++++.+|
T Consensus 79 -------~~~~q~~----~~~~~tv~~nl~~-------~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~L 139 (237)
T cd03252 79 -------GVVLQEN----VLFNRSIRDNIAL-------ADPGMSMERVIEAAKLAGAHDFISELPEGYDT-IVGEQGAGL 139 (237)
T ss_pred -------EEEcCCc----hhccchHHHHhhc-------cCCCCCHHHHHHHHHHcCcHHHHHhCcccccc-hhhcCCCcC
Confidence 1111110 0111222222210 000000111 22344444 4442 357789999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
||||||||+|||||+.+|++|||||||++||+.++..+.++|.++ +.|||++|||++++. .||+|++|++|+++.+
T Consensus 140 SgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~- 217 (237)
T cd03252 140 SGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK-NADRIIVMEKGRIVEQ- 217 (237)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEE-
Confidence 999999999999999999999999999999999999999999875 479999999999996 5999999999999865
Q ss_pred CCHHHH
Q psy11936 372 GNYSMF 377 (548)
Q Consensus 372 g~y~~f 377 (548)
|+.+++
T Consensus 218 ~~~~~~ 223 (237)
T cd03252 218 GSHDEL 223 (237)
T ss_pred cCHHHH
Confidence 665554
No 220
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-37 Score=308.20 Aligned_cols=184 Identities=27% Similarity=0.384 Sum_probs=160.1
Q ss_pred ccEEEEeEEEEeCC---------ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccC
Q psy11936 145 VDIKVENFSISAKG---------NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVAD 215 (548)
Q Consensus 145 ~~I~l~nls~~y~~---------~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~ 215 (548)
++++++||++.|.- ..+++||||+|.+||.+||||.||||||||-|+|+|+ ..|++|+|.|.++++...
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L--~~pt~G~i~f~g~~i~~~ 80 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGL--EEPTSGEILFEGKDITKL 80 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcC--cCCCCceEEEcCcchhhc
Confidence 36899999999942 2689999999999999999999999999999999974 578999999998865321
Q ss_pred chhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCH
Q psy11936 216 DLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSG 295 (548)
Q Consensus 216 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 295 (548)
. .....+++.++|+.+|+..+..++++++|||
T Consensus 81 ~------------------------------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSG 112 (268)
T COG4608 81 S------------------------------------------------KEERRERVLELLEKVGLPEEFLYRYPHELSG 112 (268)
T ss_pred c------------------------------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCc
Confidence 1 0112346778999999998899999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
||+||++|||||+.+|+++++|||||+||...+..+.++|.++ +.|.|+||||+..+..+||||++|..|+|++.+
T Consensus 113 GQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g 192 (268)
T COG4608 113 GQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIG 192 (268)
T ss_pred hhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEec
Confidence 9999999999999999999999999999999988888888764 679999999999999999999999999999986
Q ss_pred CCHHHHH
Q psy11936 372 GNYSMFK 378 (548)
Q Consensus 372 g~y~~f~ 378 (548)
..-+.|.
T Consensus 193 ~~~~~~~ 199 (268)
T COG4608 193 PTEEVFS 199 (268)
T ss_pred CHHHHhh
Confidence 5555553
No 221
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-37 Score=306.66 Aligned_cols=217 Identities=20% Similarity=0.307 Sum_probs=163.8
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC---CCCeEEEEeceeeccCc--hhHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV---PPNIDILYCEQEVVADD--LTAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~---~~~g~I~~~~q~i~~~~--~~~~ 220 (548)
.|+++||++.|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|..-.. |.+|+|.++++.+.... ....
T Consensus 3 ~l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14266 3 RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVEL 82 (250)
T ss_pred EEEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHH
Confidence 588999999999888999999999999999999999999999999999853211 37899999988764211 1111
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC---CChHHHHHHHHHhCCCCh---hhhhcccCCCC
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA---DSAEPRARRILAGLGFSR---AMQDRATKNFS 294 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~---~~~~~~~~~~L~~lgl~~---~~~~~~~~~LS 294 (548)
.. ...++++.. ..+..+..+++.... ...+. .....++.++++.+|+.. ...++++.+||
T Consensus 83 ~~-------~i~~~~q~~----~~~~~t~~~nl~~~~---~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS 148 (250)
T PRK14266 83 RK-------KVGMVFQKP----NPFPKSIFDNVAYGL---RIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLS 148 (250)
T ss_pred hh-------heEEEecCC----ccCcchHHHHHHhHH---hhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCC
Confidence 11 111111111 112224444432211 11111 113456778899998853 34578899999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
|||+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||+.++..+||++++|++|++... |
T Consensus 149 ~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~-g 227 (250)
T PRK14266 149 GGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIES-G 227 (250)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEe-C
Confidence 99999999999999999999999999999999999999999865 47999999999999999999999999999865 6
Q ss_pred CHHHH
Q psy11936 373 NYSMF 377 (548)
Q Consensus 373 ~y~~f 377 (548)
+.+.+
T Consensus 228 ~~~~~ 232 (250)
T PRK14266 228 LTDQI 232 (250)
T ss_pred CHHHH
Confidence 66554
No 222
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=4.3e-37 Score=302.61 Aligned_cols=209 Identities=29% Similarity=0.387 Sum_probs=156.0
Q ss_pred EEEEeEEEEeCC----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 147 IKVENFSISAKG----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 147 I~l~nls~~y~~----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
|+++||++.|++ ..+|+++||++.+|+++||+|+||||||||+++|+|. ..|.+|+|.+.++.+..........
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGL--RSVQEGSLKVLGQELYGASEKELVQ 79 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCeEEEECCEEhHhcCHhHHHH
Confidence 789999999975 6799999999999999999999999999999999984 4678899998887663221110000
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHH-hcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELK-AIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
. .....++++.. ......+..+++.... .+. .........++.++++.+|+. ...++++.+|||||+||+
T Consensus 80 ~----~~~i~~~~q~~---~~~~~~t~~~n~~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qrv 150 (220)
T TIGR02982 80 L----RRNIGYIFQAH---NLLGFLTARQNVQMAL-ELQPNLSYQEARERARAMLEAVGLG-DHLDYYPHNLSGGQKQRV 150 (220)
T ss_pred H----HhheEEEcCCh---hhcCCCCHHHHHHHHH-HhccCCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHH
Confidence 0 01111111111 1112234444443211 111 011122345688999999996 466889999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
+|||||+.+|++|||||||++||+.++..+.++|.++ +.|||+||||+++. .+||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~-~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL-DVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEEEEEECCEE
Confidence 9999999999999999999999999999888888654 58999999999965 69999999999986
No 223
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=7.9e-37 Score=346.52 Aligned_cols=207 Identities=28% Similarity=0.420 Sum_probs=161.6
Q ss_pred ccEEEEeEEEEeCC-ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 145 VDIKVENFSISAKG-NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 145 ~~I~l~nls~~y~~-~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.+|+++||+++|++ ..+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|.|.+.+..-..
T Consensus 507 ~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gl--l~p~~G~I~~~~~~~ig--------- 575 (718)
T PLN03073 507 PIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGE--LQPSSGTVFRSAKVRMA--------- 575 (718)
T ss_pred ceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCCceEEECCceeEE---------
Confidence 46999999999964 5699999999999999999999999999999999985 35677777654321000
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
++.+.. . ...+...+..... ..... .....++..+|..+||.....++++.+|||||||||+|
T Consensus 576 ---------yv~Q~~-~----~~l~~~~~~~~~~--~~~~~-~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaL 638 (718)
T PLN03073 576 ---------VFSQHH-V----DGLDLSSNPLLYM--MRCFP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAF 638 (718)
T ss_pred ---------EEeccc-c----ccCCcchhHHHHH--HHhcC-CCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHH
Confidence 000000 0 0000000000000 00011 12346678899999998556788999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKK 379 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~ 379 (548)
||||+.+|+||||||||||||+.++.+|.+.|..+++|||+||||++++..+||+|++|++|+++.+.|+|+.|.+
T Consensus 639 AraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~~ 714 (718)
T PLN03073 639 AKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYKK 714 (718)
T ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 9999999999999999999999999999999998888999999999999999999999999999988999998854
No 224
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-37 Score=308.77 Aligned_cols=220 Identities=21% Similarity=0.318 Sum_probs=160.7
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC---CCCeEEEEeceeeccCchhHHHHH
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV---PPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~---~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
-+++||+++|+++.+|+|+||+|.+|+++||+|+||||||||+++|+|...+. |..|+|.+.++.+........ .
T Consensus 6 ~~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~-~- 83 (251)
T PRK14244 6 ASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV-L- 83 (251)
T ss_pred EEeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH-H-
Confidence 35889999999889999999999999999999999999999999999963211 468999998876532110000 0
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC--CChHHHHHHHHHhCCCCh---hhhhcccCCCCHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA--DSAEPRARRILAGLGFSR---AMQDRATKNFSGGWR 298 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~--~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGqk 298 (548)
. .....++++.. ..+..++.+++.... .+..... ......+.++++.+|+.. ...++.+.+|||||+
T Consensus 84 ~---~~~i~~v~q~~----~~~~~tv~~ni~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 84 L---RAKVGMVFQKP----NPFPKSIYDNVAYGP-KLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQ 155 (251)
T ss_pred H---hhhEEEEecCc----ccccCCHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHH
Confidence 0 00111111111 111224444432111 1111100 112345678899999863 245778999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
|||+|||||+.+|+||||||||++||+.++.++.++|..+ +.|||+||||++++..+||+|++|++|+++.. |+.++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~-~~~~~ 234 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEY-NTTQE 234 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEe-CCHHH
Confidence 9999999999999999999999999999999999999765 47999999999999999999999999999865 55444
Q ss_pred H
Q psy11936 377 F 377 (548)
Q Consensus 377 f 377 (548)
+
T Consensus 235 ~ 235 (251)
T PRK14244 235 I 235 (251)
T ss_pred H
Confidence 3
No 225
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-37 Score=309.57 Aligned_cols=217 Identities=19% Similarity=0.288 Sum_probs=160.5
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCC-----CCeEEEEeceeeccCch--h
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVP-----PNIDILYCEQEVVADDL--T 218 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~-----~~g~I~~~~q~i~~~~~--~ 218 (548)
.|+++||+++|++..+|+|+||+|.+|+++||+|+|||||||||++|+|.. .| .+|.|.++++++..... .
T Consensus 7 ~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~--~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 7 AIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMN--ELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred eEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhccc--CCCCCccccceEEECCEEhhccccchH
Confidence 589999999998888999999999999999999999999999999999863 23 26888888876532110 0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhc-CCCChHHHHHHHHHhCCCCh---hhhhcccCCCC
Q psy11936 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI-GADSAEPRARRILAGLGFSR---AMQDRATKNFS 294 (548)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LS 294 (548)
.+.. ...++.+.. . .+..++.+++.... ..... .......++..+++.+++.. ...++++.+||
T Consensus 85 ~~~~-------~i~~~~q~~---~-l~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 152 (261)
T PRK14258 85 RLRR-------QVSMVHPKP---N-LFPMSVYDNVAYGV-KIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLS 152 (261)
T ss_pred Hhhc-------cEEEEecCC---c-cCcccHHHHHHHHH-HhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCC
Confidence 1110 011111110 1 11234444432211 01111 01112345778899998742 34678899999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeC-----C
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQ-----Q 365 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~-----G 365 (548)
|||+|||+|||||+.+|+||||||||++||+.++.++.++|..+ +.|||+||||++++..+||+|++|++ |
T Consensus 153 gGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G 232 (261)
T PRK14258 153 GGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIG 232 (261)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCc
Confidence 99999999999999999999999999999999999999988763 67999999999999999999999999 9
Q ss_pred EEEEEcCCHHHH
Q psy11936 366 KLYYYKGNYSMF 377 (548)
Q Consensus 366 ~i~~~~g~y~~f 377 (548)
+++.. |+.++.
T Consensus 233 ~i~~~-~~~~~~ 243 (261)
T PRK14258 233 QLVEF-GLTKKI 243 (261)
T ss_pred eEEEe-CCHHHH
Confidence 99865 555443
No 226
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.1e-37 Score=331.58 Aligned_cols=299 Identities=20% Similarity=0.211 Sum_probs=214.6
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
.|+++||+|+|++..+|++|||+|.+||++||+|.||||||||+|+|+|. ..|++|+|.+.++.+...+......
T Consensus 8 ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv--~~p~~G~I~~~G~~~~~~sp~~A~~--- 82 (500)
T COG1129 8 LLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGV--YPPDSGEILIDGKPVAFSSPRDALA--- 82 (500)
T ss_pred eeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCc--ccCCCceEEECCEEccCCCHHHHHh---
Confidence 58899999999999999999999999999999999999999999999984 5799999999999886654332111
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHH---HHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEE---LKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~---l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
....++.|. .+..+++++.+|+..-.+. +..++......++.++|..+|+... .+.++.+||+||||.|+
T Consensus 83 ---~GI~~V~QE---l~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~-~~~~v~~LsiaqrQ~Ve 155 (500)
T COG1129 83 ---AGIATVHQE---LSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-PDTLVGDLSIAQRQMVE 155 (500)
T ss_pred ---CCcEEEeec---hhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC-hhhhhhhCCHHHHHHHH
Confidence 001111111 1123345555554211100 0111223456778899999999633 78899999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKK 379 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~ 379 (548)
|||||..+++||||||||++|+....+.|.++++++ +.+||+|||.++++.++||||.+|.+|+++.....-.++..
T Consensus 156 IArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~~ 235 (500)
T COG1129 156 IARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSE 235 (500)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCCH
Confidence 999999999999999999999999999888888765 67999999999999999999999999998753210111100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceeeeecC--
Q psy11936 380 MYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFP-- 457 (548)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f~-- 457 (548)
.++-++ +.- + + +.-.||
T Consensus 236 -----------------~~lv~~----------------------------MvG---r----~---------~~~~~~~~ 254 (500)
T COG1129 236 -----------------DELVRL----------------------------MVG---R----E---------LEDLFPEP 254 (500)
T ss_pred -----------------HHHHHH----------------------------hhC---c----c---------hhhhcccc
Confidence 000000 000 0 0 000111
Q ss_pred CCCCCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecC----ccceeeccCCCCCCCCCCeeec
Q psy11936 458 DPPPLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKP----REYVVKFSFPDPPPLQPPILGL 522 (548)
Q Consensus 458 ~~~~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~ 522 (548)
.....+.+++++++++..- .|.|+||.. +|+-.=|.|= .+.|+++|+|..++.+|+|+..
T Consensus 255 ~~~~~~~~~l~v~~l~~~~-----~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~ 319 (500)
T COG1129 255 PEEGIGEPVLEVRNLSGGG-----KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLD 319 (500)
T ss_pred cccCCCCcEEEEecCCCCC-----ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEEC
Confidence 1113467899999988642 688999874 7777666552 5678899999999999987653
No 227
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=3.5e-37 Score=290.13 Aligned_cols=159 Identities=25% Similarity=0.314 Sum_probs=134.0
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++||+++|+++++|+++||+|.+|++++|+|+|||||||||++|+|. ..|.+|.|.+.++.+...+...
T Consensus 1 l~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~--~~~~~G~v~~~g~~~~~~~~~~------- 71 (163)
T cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGL--YKPDSGEILVDGKEVSFASPRD------- 71 (163)
T ss_pred CEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCeEEEECCEECCcCCHHH-------
Confidence 4689999999988999999999999999999999999999999999985 4678899998877553211000
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
.. -..+++ +.+|||||+||++||||
T Consensus 72 --------------------------------~~---------------~~~i~~--------~~qLS~G~~qrl~lara 96 (163)
T cd03216 72 --------------------------------AR---------------RAGIAM--------VYQLSVGERQMVEIARA 96 (163)
T ss_pred --------------------------------HH---------------hcCeEE--------EEecCHHHHHHHHHHHH
Confidence 00 000111 12299999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
|+.+|++|||||||++||+.++.++.++|+++ +.|||++|||++++..+||++++|++|+++.
T Consensus 97 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 97 LARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999766 5799999999999999999999999999864
No 228
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=5.4e-37 Score=308.39 Aligned_cols=200 Identities=26% Similarity=0.377 Sum_probs=152.4
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+++||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+.....
T Consensus 4 ~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl--~~p~~G~i~~~~~~~i~----------- 70 (251)
T PRK09544 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGL--VAPDEGVIKRNGKLRIG----------- 70 (251)
T ss_pred EEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCccCEE-----------
Confidence 58999999999988899999999999999999999999999999999985 46778888775421000
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
++++...+.. ....+..+++ . ........++..+++.+|+.. ..++++.+|||||+|||+|||
T Consensus 71 -------~v~q~~~~~~-~l~~~~~~~~-------~-~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGq~qrv~lar 133 (251)
T PRK09544 71 -------YVPQKLYLDT-TLPLTVNRFL-------R-LRPGTKKEDILPALKRVQAGH-LIDAPMQKLSGGETQRVLLAR 133 (251)
T ss_pred -------Eecccccccc-ccChhHHHHH-------h-ccccccHHHHHHHHHHcCChH-HHhCChhhCCHHHHHHHHHHH
Confidence 0000000000 0000111110 0 011112356778999999974 568899999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++ +++. .|+.+++
T Consensus 134 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~-~g~~~~~ 207 (251)
T PRK09544 134 ALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICC-SGTPEVV 207 (251)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEe-eCCHHHH
Confidence 999999999999999999999999999988654 67999999999999999999999965 6665 4665543
No 229
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.9e-37 Score=304.44 Aligned_cols=209 Identities=24% Similarity=0.388 Sum_probs=152.7
Q ss_pred EEEEeEEEEeCCc--eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 147 IKVENFSISAKGN--DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 147 I~l~nls~~y~~~--~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
|+++|++++|++. .+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+..+.......+...+
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRF--YDVDSGRILIDGHDVRDYTLASLRRQI 78 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcc--ccCCCCEEEECCEEhhhCCHHHHHhhE
Confidence 4689999999875 799999999999999999999999999999999985 367889999988765322111111111
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHH---------HHHHHHHhC--CCChhhhhcccCCC
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEP---------RARRILAGL--GFSRAMQDRATKNF 293 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~---------~~~~~L~~l--gl~~~~~~~~~~~L 293 (548)
.++.+.. ..+..++.+++.. ........ .+.+++..+ ++.. ..++++.+|
T Consensus 79 -------~~~~q~~----~~~~~tv~enl~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~L 139 (234)
T cd03251 79 -------GLVSQDV----FLFNDTVAENIAY-------GRPGATREEVEEAARAANAHEFIMELPEGYDT-VIGERGVKL 139 (234)
T ss_pred -------EEeCCCC----eeccccHHHHhhc-------cCCCCCHHHHHHHHHHcCcHHHHHhcccCcce-eeccCCCcC
Confidence 1111110 0112233332211 00000111 123445554 5543 356788999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
||||+|||+|||||+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++++.. ||+|++|++|+++. .
T Consensus 140 S~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~-~ 217 (234)
T cd03251 140 SGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN-ADRIVVLEDGKIVE-R 217 (234)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEecCCeEee-e
Confidence 999999999999999999999999999999999999999999875 5799999999999976 99999999999985 4
Q ss_pred CCHHHHH
Q psy11936 372 GNYSMFK 378 (548)
Q Consensus 372 g~y~~f~ 378 (548)
|+.+.+.
T Consensus 218 ~~~~~~~ 224 (234)
T cd03251 218 GTHEELL 224 (234)
T ss_pred CCHHHHH
Confidence 6666553
No 230
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-37 Score=311.09 Aligned_cols=221 Identities=20% Similarity=0.311 Sum_probs=161.5
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCC---CCeEEEEeceeeccCchhHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVP---PNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~---~~g~I~~~~q~i~~~~~~~~~ 221 (548)
.+|+++||+++|+++.+|+++||+|.+|++++|+|+|||||||||++|+|...+.| ..|.|.+.++++........
T Consensus 19 ~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~- 97 (274)
T PRK14265 19 SVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV- 97 (274)
T ss_pred ceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhH-
Confidence 46999999999998889999999999999999999999999999999998632222 58999998876632111000
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCC---hhhhhcccCCCCHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFS---RAMQDRATKNFSGGWR 298 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~---~~~~~~~~~~LSGGqk 298 (548)
. . .....++++.. ..+..++.+++.... ..... .......+..+++.+++. ....++++.+|||||+
T Consensus 98 ~-~---~~~i~~v~q~~----~l~~~tv~~nl~~~~-~~~~~-~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~ 167 (274)
T PRK14265 98 K-L---RRQVGMVFQRP----NPFPKSIYENIAFAP-RANGY-KGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQ 167 (274)
T ss_pred H-H---hhcEEEEccCC----ccccccHHHHHHhHH-HhcCc-hHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHH
Confidence 0 0 00111111111 011123344332110 00000 011234456778888874 2345788999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEe---------CCEE
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLD---------QQKL 367 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~---------~G~i 367 (548)
|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||++++|+ +|++
T Consensus 168 qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~ 247 (274)
T PRK14265 168 QRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKL 247 (274)
T ss_pred HHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceE
Confidence 9999999999999999999999999999999999999876 4799999999999999999999998 7999
Q ss_pred EEEcCCHHHH
Q psy11936 368 YYYKGNYSMF 377 (548)
Q Consensus 368 ~~~~g~y~~f 377 (548)
+.+ |+-+++
T Consensus 248 ~~~-g~~~~~ 256 (274)
T PRK14265 248 VEF-SPTEQM 256 (274)
T ss_pred EEe-CCHHHH
Confidence 875 555443
No 231
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=4.3e-37 Score=303.08 Aligned_cols=207 Identities=26% Similarity=0.342 Sum_probs=151.3
Q ss_pred cEEEEeEEEEeCC-------ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEece----eecc
Q psy11936 146 DIKVENFSISAKG-------NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQ----EVVA 214 (548)
Q Consensus 146 ~I~l~nls~~y~~-------~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q----~i~~ 214 (548)
+|+++||+++|++ ..+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|.|.+.+. ++..
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~~~g~~~~~~~ 78 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYAN--YLPDSGRILVRHEGAWVDLAQ 78 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCeEEEecCCCccchhh
Confidence 3789999999963 4799999999999999999999999999999999985 4577899988631 2211
Q ss_pred CchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC--CChHHHHHHHHHhCCCChhhhhcccCC
Q psy11936 215 DDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA--DSAEPRARRILAGLGFSRAMQDRATKN 292 (548)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~--~~~~~~~~~~L~~lgl~~~~~~~~~~~ 292 (548)
.+........ .....++.+.. ......++.+++... +...+. .....++.++++.+|+.....++++.+
T Consensus 79 ~~~~~~~~~~---~~~i~~~~q~~---~~~~~~tv~e~l~~~---~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 149 (224)
T TIGR02324 79 ASPREVLEVR---RKTIGYVSQFL---RVIPRVSALEVVAEP---LLERGVPREAARARARELLARLNIPERLWHLPPAT 149 (224)
T ss_pred cCHHHHHHHH---hcceEEEeccc---ccCCCccHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCccc
Confidence 1111000000 00111222111 112223444443321 111121 123457788999999975455789999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEe
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLD 363 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~ 363 (548)
|||||+||++|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||.+++..+||+|+.+.
T Consensus 150 LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 150 FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEecC
Confidence 9999999999999999999999999999999999999999998765 5799999999999999999999873
No 232
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-37 Score=310.05 Aligned_cols=219 Identities=18% Similarity=0.282 Sum_probs=161.3
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC---CCCeEEEEeceeeccCc--hhH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV---PPNIDILYCEQEVVADD--LTA 219 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~---~~~g~I~~~~q~i~~~~--~~~ 219 (548)
.+|+++||+++|++..+|+|+||+|.+|+++||+|+|||||||||++|+|...+. |.+|+|.+.+..+.... ...
T Consensus 9 ~~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 88 (264)
T PRK14243 9 TVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVE 88 (264)
T ss_pred eEEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHH
Confidence 3699999999999889999999999999999999999999999999999853211 36899999887653211 111
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh---hhhhcccCCCCHH
Q psy11936 220 VESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR---AMQDRATKNFSGG 296 (548)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGG 296 (548)
+.. ...++.+.. ..+..++.+++..... .... ......++..++..+++.. ...++.+.+||||
T Consensus 89 ~~~-------~i~~v~q~~----~~~~~tv~enl~~~~~-~~~~-~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG 155 (264)
T PRK14243 89 VRR-------RIGMVFQKP----NPFPKSIYDNIAYGAR-INGY-KGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGG 155 (264)
T ss_pred Hhh-------hEEEEccCC----ccccccHHHHHHhhhh-hcCc-chHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHH
Confidence 110 111111110 0111234444321110 0000 1122345667788888742 2457889999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEe---------CC
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLD---------QQ 365 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~---------~G 365 (548)
|+|||+|||||+.+|+||||||||++||+.++.++.++|..+ +.|||+||||++++..+||+|++|+ +|
T Consensus 156 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g 235 (264)
T PRK14243 156 QQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYG 235 (264)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCc
Confidence 999999999999999999999999999999999999999876 3799999999999999999999998 79
Q ss_pred EEEEEcCCHHHH
Q psy11936 366 KLYYYKGNYSMF 377 (548)
Q Consensus 366 ~i~~~~g~y~~f 377 (548)
+++.. |...++
T Consensus 236 ~i~~~-~~~~~~ 246 (264)
T PRK14243 236 YLVEF-DRTEKI 246 (264)
T ss_pred eEEEe-CCHHHH
Confidence 99865 555443
No 233
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.9e-37 Score=326.38 Aligned_cols=209 Identities=23% Similarity=0.289 Sum_probs=158.0
Q ss_pred eEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchh-HHHHHHHhhHH
Q psy11936 151 NFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLT-AVESVLKADVK 229 (548)
Q Consensus 151 nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~-~~~~~~~~~~~ 229 (548)
||+++|++..+ ++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++...... .... ...
T Consensus 4 ~l~~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl--~~p~~G~I~~~g~~i~~~~~~~~~~~----~~~ 75 (354)
T TIGR02142 4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGL--TRPDEGEIVLNGRTLFDSRKGIFLPP----EKR 75 (354)
T ss_pred EEEEEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEECccCccccccch----hhC
Confidence 89999987654 99999999999999999999999999999985 467889999988776321100 0000 000
Q ss_pred HHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHcc
Q psy11936 230 RTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYI 309 (548)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~ 309 (548)
...++++. ...+...++.+++.... ..........++.++|+.+||. ...++++.+|||||||||+|||||+.
T Consensus 76 ~i~~v~q~---~~l~~~~tv~enl~~~~---~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGqkqRvalAraL~~ 148 (354)
T TIGR02142 76 RIGYVFQE---ARLFPHLSVRGNLRYGM---KRARPSERRISFERVIELLGIG-HLLGRLPGRLSGGEKQRVAIGRALLS 148 (354)
T ss_pred CeEEEecC---CccCCCCcHHHHHHHHh---hccChhHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 11111111 11222345555553211 1111122345688999999997 46789999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHH
Q psy11936 310 EPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 310 ~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~ 375 (548)
+|++|||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+
T Consensus 149 ~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~-g~~~ 217 (354)
T TIGR02142 149 SPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAA-GPIA 217 (354)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEE-CCHH
Confidence 99999999999999999999988888764 57999999999999999999999999999865 5543
No 234
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1.2e-36 Score=302.73 Aligned_cols=209 Identities=23% Similarity=0.351 Sum_probs=148.3
Q ss_pred EEEEeEEEEeCC---ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 147 IKVENFSISAKG---NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 147 I~l~nls~~y~~---~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
|+++|+++.|++ .++|+|+||+|++|+++||+|+|||||||||++|+|. ..|.+|+|.+.+.++...+...+...
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERF--YDPTSGEILLDGVDIRDLNLRWLRSQ 78 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhcc--CCCCCCEEEECCEehhhcCHHHHHhh
Confidence 468999999964 4699999999999999999999999999999999985 46788999998876532211111111
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHH---------HHHhC--CCChhhhhcccCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARR---------ILAGL--GFSRAMQDRATKN 292 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~---------~L~~l--gl~~~~~~~~~~~ 292 (548)
+ .++.+... .+..++.+++. ..........+.. ++..+ ++.. ..++++.+
T Consensus 79 i-------~~~~q~~~----~~~~tv~e~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~ 139 (238)
T cd03249 79 I-------GLVSQEPV----LFDGTIAENIR-------YGKPDATDEEVEEAAKKANIHDFIMSLPDGYDT-LVGERGSQ 139 (238)
T ss_pred E-------EEECCchh----hhhhhHHHHhh-------ccCCCCCHHHHHHHHHHcChHHHHHhhccccce-eeccCCcc
Confidence 1 11111100 00112222211 0000001111222 22333 3332 34667899
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|||||+|||+|||||+.+|++|||||||++||+.++.++.++|..+ +.|||++|||++++. +||+|++|++|+++.
T Consensus 140 LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~- 217 (238)
T cd03249 140 LSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR-NADLIAVLQNGQVVE- 217 (238)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-hCCEEEEEECCEEEE-
Confidence 9999999999999999999999999999999999999999999765 479999999999997 899999999999975
Q ss_pred cCCHHHHH
Q psy11936 371 KGNYSMFK 378 (548)
Q Consensus 371 ~g~y~~f~ 378 (548)
.|+.+.+.
T Consensus 218 ~~~~~~~~ 225 (238)
T cd03249 218 QGTHDELM 225 (238)
T ss_pred eCCHHHHh
Confidence 46655543
No 235
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-36 Score=327.65 Aligned_cols=204 Identities=18% Similarity=0.261 Sum_probs=157.5
Q ss_pred ccEEEEeEEEEeCC---ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 145 VDIKVENFSISAKG---NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 145 ~~I~l~nls~~y~~---~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
.+++++||+++|++ +.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|.|.+.+...... ..
T Consensus 20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGL--l~P~sGeI~I~G~~~~i~-~~--- 93 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGV--TMPNKGTVDIKGSAALIA-IS--- 93 (549)
T ss_pred ceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCC--CCCCceEEEECCEeeeEE-ec---
Confidence 36899999999976 4699999999999999999999999999999999985 467889998877542100 00
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
. ......++.+++.... .+..........++..+++.+|+.. ..++++.+|||||||||
T Consensus 94 ---------~----------~l~~~lTV~EnL~l~~-~~~~~~~~e~~e~i~elLe~lgL~~-~ld~~~~~LSGGQrQRV 152 (549)
T PRK13545 94 ---------S----------GLNGQLTGIENIELKG-LMMGLTKEKIKEIIPEIIEFADIGK-FIYQPVKTYSSGMKSRL 152 (549)
T ss_pred ---------c----------ccCCCCcHHHHHHhhh-hhcCCCHHHHHHHHHHHHHHcCChh-HhhCCcccCCHHHHHHH
Confidence 0 0001122333321100 0011111112345667899999974 56899999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
+|||||+.+|+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++.+ |+.++
T Consensus 153 aLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~-G~~~e 229 (549)
T PRK13545 153 GFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEY-GDIKE 229 (549)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE-CCHHH
Confidence 9999999999999999999999999999999988765 57999999999999999999999999999876 44433
No 236
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=4e-37 Score=340.12 Aligned_cols=223 Identities=22% Similarity=0.349 Sum_probs=165.5
Q ss_pred ccEEEEeEEEEeC-----------CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeec
Q psy11936 145 VDIKVENFSISAK-----------GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVV 213 (548)
Q Consensus 145 ~~I~l~nls~~y~-----------~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~ 213 (548)
.+|+++||+++|+ ++.+|+++||+|.+|+++||+|||||||||||++|+|.. |.+|+|.+.+.++.
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~---~~~G~i~~~g~~i~ 350 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI---NSQGEIWFDGQPLH 350 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC---CCCcEEEECCEEcc
Confidence 3699999999995 357999999999999999999999999999999999852 47899999887664
Q ss_pred cCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHh--cCCCChHHHHHHHHHhCCCChhhhhcccC
Q psy11936 214 ADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA--IGADSAEPRARRILAGLGFSRAMQDRATK 291 (548)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~--~~~~~~~~~~~~~L~~lgl~~~~~~~~~~ 291 (548)
..+...... . .....++++... .......++.+++..... +.. ........++.++|+.+|+.....++++.
T Consensus 351 ~~~~~~~~~-~---~~~i~~v~q~~~-~~l~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 424 (529)
T PRK15134 351 NLNRRQLLP-V---RHRIQVVFQDPN-SSLNPRLNVLQIIEEGLR-VHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPA 424 (529)
T ss_pred ccchhhHHH-h---hhceEEEEeCch-hhcCCcccHHHHHHHHHH-hccccCChHHHHHHHHHHHHHcCCCHHHHhcCCc
Confidence 221111100 0 001111111110 011223455555432111 110 11112345688999999997445789999
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 292 ~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
+|||||||||+|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|++
T Consensus 425 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i 504 (529)
T PRK15134 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEV 504 (529)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEE
Confidence 99999999999999999999999999999999999999999998753 57999999999999999999999999999
Q ss_pred EEEcCCHHHH
Q psy11936 368 YYYKGNYSMF 377 (548)
Q Consensus 368 ~~~~g~y~~f 377 (548)
+.. |+.+++
T Consensus 505 ~~~-~~~~~~ 513 (529)
T PRK15134 505 VEQ-GDCERV 513 (529)
T ss_pred EEE-cCHHHH
Confidence 864 555544
No 237
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-37 Score=312.89 Aligned_cols=215 Identities=20% Similarity=0.307 Sum_probs=157.0
Q ss_pred cEEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.|+++||+++|+ ++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+..+... ..
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~~----~~--- 76 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGF--VRLASGKISILGQPTRQA----LQ--- 76 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEEhHHh----hc---
Confidence 489999999995 57899999999999999999999999999999999985 467889999888754210 00
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHH-HHHHHhcC--CCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEI-YEELKAIG--ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~-~~~l~~~~--~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
.....++++...+. ..+.....+++... ........ ......++.++++.+|+.. ..++++.+|||||+|||
T Consensus 77 ---~~~i~~v~q~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~qrv 151 (272)
T PRK15056 77 ---KNLVAYVPQSEEVD-WSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVE-FRHRQIGELSGGQKKRV 151 (272)
T ss_pred ---cceEEEeccccccc-cCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChh-HhcCCcccCCHHHHHHH
Confidence 00011111110000 00001111111000 00000000 1112456778899999974 56899999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+++++ +|+++.. |+.++
T Consensus 152 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~-g~~~~ 227 (272)
T PRK15056 152 FLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLAS-GPTET 227 (272)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEee-cCHHh
Confidence 9999999999999999999999999999999999765 579999999999999999999877 8999865 55544
No 238
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-37 Score=292.97 Aligned_cols=218 Identities=25% Similarity=0.336 Sum_probs=167.2
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++|||++..++.+|+++||++.+||+++|+||||||||||||.|+|. ..|.+|.+.+++..+.......+.
T Consensus 1 mi~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGe--l~p~~G~v~~~g~~l~~~~~~~lA---- 74 (259)
T COG4559 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGE--LSPDSGEVTLNGVPLNSWPPEELA---- 74 (259)
T ss_pred CeeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCc--cCCCCCeEeeCCcChhhCCHHHHH----
Confidence 48899999999999999999999999999999999999999999999985 468899999999877544333221
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHH-hcCCC--ChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELK-AIGAD--SAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~--~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
+...++++... ..|..++.+.+.. ..+. ..+.. +....++.+|...++.. +..+...+|||||||||.
T Consensus 75 ---~~raVlpQ~s~---laFpFtv~eVV~m--Gr~p~~~g~~~~e~~~i~~~ala~~d~~~-la~R~y~~LSGGEqQRVq 145 (259)
T COG4559 75 ---RHRAVLPQNSS---LAFPFTVQEVVQM--GRIPHRSGREPEEDERIAAQALAATDLSG-LAGRDYRTLSGGEQQRVQ 145 (259)
T ss_pred ---HHhhhcccCcc---cccceEHHHHHHh--cccccccCCCchhhHHHHHHHHHHcChhh-hhccchhhcCchHHHHHH
Confidence 12223333221 2233344332210 0000 11122 23344788999999874 678888999999999999
Q ss_pred HHHHHcc------CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCC
Q psy11936 303 LARALYI------EPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 303 LAraL~~------~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~ 373 (548)
|||+|++ ++.+|+||||||+||+..+..+.++.+++ ++.|+.|-||++.+..+||||++|.+|+++..+.+
T Consensus 146 lARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p 225 (259)
T COG4559 146 LARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSP 225 (259)
T ss_pred HHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCH
Confidence 9999976 44599999999999999988888887776 57999999999999999999999999999987666
Q ss_pred HHHHH
Q psy11936 374 YSMFK 378 (548)
Q Consensus 374 y~~f~ 378 (548)
.+.+.
T Consensus 226 ~~vlt 230 (259)
T COG4559 226 QDVLT 230 (259)
T ss_pred HHhcC
Confidence 55543
No 239
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.1e-36 Score=309.94 Aligned_cols=206 Identities=21% Similarity=0.324 Sum_probs=157.1
Q ss_pred cEEEEeEEEEe--CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISA--KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y--~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+++| ++..+|+|+||+|.+|+++||+|+|||||||||++|+|.. +.+|.|.+++.++...+...+...
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~---~~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL---NTEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc---CCCcEEEECCEEhhhCCHHHHhhh
Confidence 37899999999 4567999999999999999999999999999999999863 367999998877643222111111
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCC-----------
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKN----------- 292 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~----------- 292 (548)
..++++.. ..+..++.+++. ..+. ....++.++++.+|+.. ..++.+..
T Consensus 79 -------i~~v~q~~----~lf~~tv~~nl~-------~~~~-~~~~~~~~~l~~~gL~~-~~~~~p~~l~~~~~~~g~~ 138 (275)
T cd03289 79 -------FGVIPQKV----FIFSGTFRKNLD-------PYGK-WSDEEIWKVAEEVGLKS-VIEQFPGQLDFVLVDGGCV 138 (275)
T ss_pred -------EEEECCCc----ccchhhHHHHhh-------hccC-CCHHHHHHHHHHcCCHH-HHHhCcccccceecCCCCC
Confidence 11111110 111223333321 1111 23456778899999974 46777766
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|||||+|||+|||||+.+|+||||||||++||+.+...+.+.|... ++|||+||||++++.. ||+|++|++|+++.+
T Consensus 139 LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~-~dri~vl~~G~i~~~ 217 (275)
T cd03289 139 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE-CQRFLVIEENKVRQY 217 (275)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh-CCEEEEecCCeEeec
Confidence 9999999999999999999999999999999999999999999864 5799999999999875 999999999999987
Q ss_pred cCCHH
Q psy11936 371 KGNYS 375 (548)
Q Consensus 371 ~g~y~ 375 (548)
+.+.+
T Consensus 218 g~~~~ 222 (275)
T cd03289 218 DSIQK 222 (275)
T ss_pred CCHHH
Confidence 54433
No 240
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.1e-37 Score=285.91 Aligned_cols=213 Identities=24% Similarity=0.338 Sum_probs=164.5
Q ss_pred cEEEEeEEEEeCC----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 146 DIKVENFSISAKG----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~~----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
.|+++++++..+. -.||++|+|.|.+||.++|||||||||||||-+++|+ ..|.+|.|.+.++.+...+.....
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGL--d~~ssGeV~l~G~~L~~ldEd~rA 83 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGL--DDPSSGEVRLLGQPLHKLDEDARA 83 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcC--CCCCCceEEEcCcchhhcCHHHHH
Confidence 5888899888754 3699999999999999999999999999999999985 588999999999988654433221
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
.+.. ...+++++.. ...++++..+++.... .+..-+.......+..+|..+|+.. .+..+|.+|||||+|||
T Consensus 84 ~~R~---~~vGfVFQSF---~Lip~ltAlENV~lPl-eL~ge~~~~~~~~A~~lL~~vGLg~-Rl~HyP~qLSGGEQQRV 155 (228)
T COG4181 84 ALRA---RHVGFVFQSF---HLIPNLTALENVALPL-ELRGESSADSRAGAKALLEAVGLGK-RLTHYPAQLSGGEQQRV 155 (228)
T ss_pred Hhhc---cceeEEEEee---eccccchhhhhccchh-hhcCCccccHHHHHHHHHHHhCccc-ccccCccccCchHHHHH
Confidence 1110 1112222211 1123445555543322 2332234556677999999999985 56899999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh----hcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQ----GWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~----~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
+|||||+..|+||+.||||.+||..+-..+.++|- +.+.|+|+||||...+.+ |+|++.|.+|+|+.
T Consensus 156 AiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~G~l~~ 226 (228)
T COG4181 156 ALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeeeecceecc
Confidence 99999999999999999999999998877777764 456899999999999876 99999999999863
No 241
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-37 Score=339.30 Aligned_cols=222 Identities=15% Similarity=0.185 Sum_probs=163.5
Q ss_pred cEEEEeEEEEeC---CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC-CCCeEEEEeceeeccCchhHHH
Q psy11936 146 DIKVENFSISAK---GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV-PPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~---~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~-~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
+|+++||+++|+ +..+|+|+||+|.+|+++||+|+|||||||||++|+|. .. |.+|+|.+.++++.......
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl--~~~~~~G~i~~~g~~~~~~~~~~-- 334 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGA--YPGRWEGEIFIDGKPVKIRNPQQ-- 334 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCC--CCCCCCcEEEECCEECCCCCHHH--
Confidence 699999999993 45799999999999999999999999999999999985 24 47899999887763221110
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHH-HHHHhc---CCCChHHHHHHHHHhCCCChhhhhcccCCCCHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIY-EELKAI---GADSAEPRARRILAGLGFSRAMQDRATKNFSGGW 297 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~-~~l~~~---~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 297 (548)
. . .....++.+...........++.+++.... ..+... .......++.++|+.+|+.....++++.+|||||
T Consensus 335 ~-~---~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~ 410 (506)
T PRK13549 335 A-I---AQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGN 410 (506)
T ss_pred H-H---HCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHH
Confidence 0 0 001122222110001122344555443211 011100 1111235688999999996335689999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
||||+|||||+.+|+||||||||++||+.++..+.++|..+ +.|||+||||++++..+||++++|++|+++.. |+.
T Consensus 411 kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~-~~~ 489 (506)
T PRK13549 411 QQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGD-LIN 489 (506)
T ss_pred HHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE-ecc
Confidence 99999999999999999999999999999999988887654 67999999999999999999999999999754 444
Q ss_pred HH
Q psy11936 375 SM 376 (548)
Q Consensus 375 ~~ 376 (548)
++
T Consensus 490 ~~ 491 (506)
T PRK13549 490 HN 491 (506)
T ss_pred cc
Confidence 44
No 242
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=5.4e-37 Score=298.07 Aligned_cols=195 Identities=26% Similarity=0.384 Sum_probs=152.3
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++||++.|+++.+|+++||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+..+.... ..+.
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~-~~~~----- 72 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGL--SPPLAGRVLLNGGPLDFQR-DSIA----- 72 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEeccccc-HHhh-----
Confidence 4689999999988999999999999999999999999999999999985 4678899998877653211 1000
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
....++.+. ....+..++.+++... .......++.++++.+|+.. ..++++.+|||||+||++||||
T Consensus 73 --~~i~~~~q~---~~~~~~~tv~e~l~~~-------~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~lara 139 (201)
T cd03231 73 --RGLLYLGHA---PGIKTTLSVLENLRFW-------HADHSDEQVEEALARVGLNG-FEDRPVAQLSAGQQRRVALARL 139 (201)
T ss_pred --hheEEeccc---cccCCCcCHHHHHHhh-------cccccHHHHHHHHHHcCChh-hhcCchhhCCHHHHHHHHHHHH
Confidence 111111111 1111233444443211 01123567888999999974 5688999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEE
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHL 362 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L 362 (548)
|+.+|++|||||||++||+.++.++.++|.++ +.|+|+||||...+..+|++++++
T Consensus 140 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 140 LLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999999999999999765 679999999999999999999887
No 243
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-36 Score=299.89 Aligned_cols=209 Identities=23% Similarity=0.375 Sum_probs=149.3
Q ss_pred EEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 147 IKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 147 I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
|+++|++++|+ ++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++...+...+...+.
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl--~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRF--YDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc--cCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 46899999996 57799999999999999999999999999999999985 4678899998887654322111111111
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHH---------HHHhC--CCChhhhhcccCCCC
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARR---------ILAGL--GFSRAMQDRATKNFS 294 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~---------~L~~l--gl~~~~~~~~~~~LS 294 (548)
+..+.. ..+..++.+++.. .........+.. .+..+ |+.. ..++++.+||
T Consensus 79 -------~~~q~~----~~~~~tv~~nl~~-------~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~-~~~~~~~~LS 139 (236)
T cd03253 79 -------VVPQDT----VLFNDTIGYNIRY-------GRPDATDEEVIEAAKAAQIHDKIMRFPDGYDT-IVGERGLKLS 139 (236)
T ss_pred -------EECCCC----hhhcchHHHHHhh-------cCCCCCHHHHHHHHHHcCcHHHHHhccccccc-hhhcCCCcCC
Confidence 111100 0111222222211 000011111222 23333 3332 3456788999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
|||+|||+|||||+.+|++|||||||++||+.++..+.++|..+ +.|||+|||+.+++.. ||++++|++|+++. .|
T Consensus 140 ~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~d~~~~l~~g~i~~-~~ 217 (236)
T cd03253 140 GGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN-ADKIIVLKDGRIVE-RG 217 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh-CCEEEEEECCEEEe-eC
Confidence 99999999999999999999999999999999999999998765 5699999999999965 99999999999985 46
Q ss_pred CHHHHH
Q psy11936 373 NYSMFK 378 (548)
Q Consensus 373 ~y~~f~ 378 (548)
+.+++.
T Consensus 218 ~~~~~~ 223 (236)
T cd03253 218 THEELL 223 (236)
T ss_pred CHHHHh
Confidence 655543
No 244
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-36 Score=315.63 Aligned_cols=221 Identities=21% Similarity=0.319 Sum_probs=162.6
Q ss_pred ccEEEEeEEEEeC--CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCC---CCCCeEEEEeceeeccCchhH
Q psy11936 145 VDIKVENFSISAK--GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK---VPPNIDILYCEQEVVADDLTA 219 (548)
Q Consensus 145 ~~I~l~nls~~y~--~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~---~~~~g~I~~~~q~i~~~~~~~ 219 (548)
..|+++|++++|. ...+|+|+||+|.+|+++||+|+|||||||||++|+|.... .|.+|.|.++++++.......
T Consensus 79 ~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~ 158 (329)
T PRK14257 79 NVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISS 158 (329)
T ss_pred ceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 4699999999995 35799999999999999999999999999999999986321 256899999998774211110
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCC-hHHHHHHHHHhCCCCh---hhhhcccCCCCH
Q psy11936 220 VESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADS-AEPRARRILAGLGFSR---AMQDRATKNFSG 295 (548)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~-~~~~~~~~L~~lgl~~---~~~~~~~~~LSG 295 (548)
. . + .....++++.. ..+..+..+++... ..+....... ....+..+++.+++.. ...+.++.+|||
T Consensus 159 ~-~-l---r~~i~~v~q~~----~~~~~ti~eNi~~~-~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSg 228 (329)
T PRK14257 159 L-E-L---RTRIGMVFQKP----TPFEMSIFDNVAYG-PRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSG 228 (329)
T ss_pred H-h-h---hccEEEEecCC----ccCCCcHHHHHHhH-HHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCH
Confidence 0 0 0 01111222211 12334555555311 0010010011 1233677888888742 245788999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCC
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~ 373 (548)
||||||+|||||+.+|+||||||||++||+.+..++.+.|..+ +.|||+|||+++++..+||+|++|++|+++.+ |+
T Consensus 229 GqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~-g~ 307 (329)
T PRK14257 229 GQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEA-GE 307 (329)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CC
Confidence 9999999999999999999999999999999999999998865 47999999999999999999999999999987 44
Q ss_pred HHH
Q psy11936 374 YSM 376 (548)
Q Consensus 374 y~~ 376 (548)
..+
T Consensus 308 ~~~ 310 (329)
T PRK14257 308 TKT 310 (329)
T ss_pred HHH
Confidence 444
No 245
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=4.3e-37 Score=325.18 Aligned_cols=216 Identities=24% Similarity=0.268 Sum_probs=162.2
Q ss_pred eEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEecee----eccCchhHHHHHHHh
Q psy11936 151 NFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQE----VVADDLTAVESVLKA 226 (548)
Q Consensus 151 nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~----i~~~~~~~~~~~~~~ 226 (548)
++.+.|+...+|+|+||+|.+|++++|+|+|||||||||++|+|. ..|.+|+|.+.++. +...+...+....
T Consensus 29 ~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl--~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r-- 104 (382)
T TIGR03415 29 EILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGL--NPVSRGSVLVKDGDGSIDVANCDAATLRRLR-- 104 (382)
T ss_pred HHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCCcEEEECCEecccccccCCHHHHHHHh--
Confidence 567788888999999999999999999999999999999999985 46889999998752 2211111111100
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
.....++++. ...++..++.+++.... .+..........++.++|+.+||.. ..++++.+|||||+|||+||||
T Consensus 105 -~~~i~~vfQ~---~~l~p~~Tv~eNi~~~~-~~~g~~~~~~~~~a~e~le~vgL~~-~~~~~~~~LSgGq~QRV~LARA 178 (382)
T TIGR03415 105 -THRVSMVFQK---FALMPWLTVEENVAFGL-EMQGMPEAERRKRVDEQLELVGLAQ-WADKKPGELSGGMQQRVGLARA 178 (382)
T ss_pred -cCCEEEEECC---CcCCCCCcHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHH
Confidence 0011111111 11222346666654221 1111112223467889999999974 6789999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|+.+|+||||||||++||+.++.++.+.|.++ +.||||||||++++.++||+|++|++|+++.. |+.+++
T Consensus 179 La~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~-g~~~ei 252 (382)
T TIGR03415 179 FAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQH-GTPEEI 252 (382)
T ss_pred HhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-cCHHHH
Confidence 99999999999999999999999999888654 67999999999999999999999999999875 555443
No 246
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.5e-36 Score=298.45 Aligned_cols=202 Identities=23% Similarity=0.344 Sum_probs=150.8
Q ss_pred EEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 147 IKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 147 I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
|+++||+++|++ +.+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+..+.......+..
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~~-- 78 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRL--VELSSGSILIDGVDISKIGLHDLRS-- 78 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcC--CCCCCCEEEECCEEhHhCCHHHHhh--
Confidence 789999999964 4799999999999999999999999999999999985 4678899999887653222111111
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhh----------hhcccCCCC
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAM----------QDRATKNFS 294 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~----------~~~~~~~LS 294 (548)
...+..+... .+..++.+++. ... .....++.++++.+++.... .+.++..||
T Consensus 79 -----~i~~~~q~~~----l~~~tv~enl~-------~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS 141 (221)
T cd03244 79 -----RISIIPQDPV----LFSGTIRSNLD-------PFG-EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLS 141 (221)
T ss_pred -----hEEEECCCCc----cccchHHHHhC-------cCC-CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCC
Confidence 1111111100 11122322221 011 11234455566666664322 246789999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|||+|||+|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++.. ||++++|++|+++.+
T Consensus 142 ~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~ 218 (221)
T cd03244 142 VGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID-SDRILVLDKGRVVEF 218 (221)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCeEEec
Confidence 99999999999999999999999999999999999999999875 4799999999999975 999999999999865
No 247
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=8.5e-38 Score=295.20 Aligned_cols=219 Identities=24% Similarity=0.309 Sum_probs=173.5
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
.|.++||.++|+.+.++++|||+|++||++||+|||||||||.+.++.|+ ..|++|+|.++++++.........
T Consensus 4 ~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Gl--v~~d~G~i~ld~~diT~lPm~~RA---- 77 (243)
T COG1137 4 TLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGL--VRPDSGKILLDDEDITKLPMHKRA---- 77 (243)
T ss_pred EEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEE--EecCCceEEECCcccccCChHHHh----
Confidence 58899999999999999999999999999999999999999999999984 578999999999998765432211
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCC--ChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD--SAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~--~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
....++++|... .+-.+++.+++..+.+... ...+ ....++.++|+.|++. +..+.+..+||||||+|+.|
T Consensus 78 --rlGigYLpQE~S---IFr~LtV~dNi~~vlE~~~-~d~~~~~~~~~l~~LL~ef~i~-hlr~~~a~sLSGGERRR~EI 150 (243)
T COG1137 78 --RLGIGYLPQEAS---IFRKLTVEDNIMAVLEIRE-KDLKKAERKEELDALLEEFHIT-HLRDSKAYSLSGGERRRVEI 150 (243)
T ss_pred --hcCcccccccch---HhhcCcHHHHHHHHHhhhh-cchhHHHHHHHHHHHHHHhchH-HHhcCcccccccchHHHHHH
Confidence 112234443321 2234567777665544322 1222 2234567999999998 47899999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHH---HhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNY---LQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~---L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~ 378 (548)
||||+.+|.++|||||++|.||.++..+.++ |+..+..|+|+-|+..+...+|||.+++.+|++... |+.++..
T Consensus 151 ARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~-G~p~ei~ 227 (243)
T COG1137 151 ARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAE-GSPEEIV 227 (243)
T ss_pred HHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEec-CCHHHHh
Confidence 9999999999999999999999887665555 555678999999999999999999999999999865 6655543
No 248
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.5e-36 Score=299.62 Aligned_cols=208 Identities=22% Similarity=0.379 Sum_probs=148.9
Q ss_pred ccEEEEeEEEEeCC---ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 145 VDIKVENFSISAKG---NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 145 ~~I~l~nls~~y~~---~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
.+|+++||+++|++ ..+|+++||+|.+|+++||+||||||||||+++|+|. ..|.+|+|.+.+..+.........
T Consensus 10 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 10 GIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENF--YQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred ceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--cCCCCcEEEECCCchHHcCHHHHH
Confidence 36899999999975 3699999999999999999999999999999999985 467889999888655322111111
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHH--HHhcCCCChHHHHHHHHHhC--CCChhhhhcccCCCCHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEE--LKAIGADSAEPRARRILAGL--GFSRAMQDRATKNFSGGW 297 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~--l~~~~~~~~~~~~~~~L~~l--gl~~~~~~~~~~~LSGGq 297 (548)
..+....+...++ ..++.+++...... ............+.++++.+ |+.. ..+.++.+|||||
T Consensus 88 ~~i~~~~q~~~l~-----------~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~-~~~~~~~~LSgG~ 155 (226)
T cd03248 88 SKVSLVGQEPVLF-----------ARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDT-EVGEKGSQLSGGQ 155 (226)
T ss_pred hhEEEEecccHHH-----------hhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccc-hhhcCCCcCCHHH
Confidence 1111111111111 11222221100000 00000000011245677888 7764 4688899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
+|||+|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++.. ||+|++|++|++
T Consensus 156 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~i 226 (226)
T cd03248 156 KQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVER-ADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh-CCEEEEecCCcC
Confidence 99999999999999999999999999999999999999875 3699999999999964 999999999874
No 249
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=7.5e-37 Score=303.23 Aligned_cols=191 Identities=24% Similarity=0.307 Sum_probs=146.8
Q ss_pred eEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHHHh
Q psy11936 162 FVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLE 241 (548)
Q Consensus 162 L~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (548)
|+++||+|.+|+++||+|+||||||||+++|+|. ..|.+|+|.+.++++...... ..++.+. .
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~------------~~~v~q~---~ 63 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGL--AQPTSGGVILEGKQITEPGPD------------RMVVFQN---Y 63 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEECCCCChh------------heEEecC---c
Confidence 5789999999999999999999999999999985 467899999988876422110 0111111 1
Q ss_pred hhcCChhHHHHHHHHHHH-HHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCC
Q psy11936 242 AADFSSEQQEQLKEIYEE-LKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPT 320 (548)
Q Consensus 242 ~~~~~~~~~~~l~~~~~~-l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPT 320 (548)
......++.+++...... +..........++.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||
T Consensus 64 ~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 142 (230)
T TIGR01184 64 SLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLT-EAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPF 142 (230)
T ss_pred ccCCCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCH-HHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 111224555554321110 00111112234578899999997 4678899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 321 NHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 321 n~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++..
T Consensus 143 ~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~ 196 (230)
T TIGR01184 143 GALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANI 196 (230)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecc
Confidence 999999999999988764 57999999999999999999999999999865
No 250
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=1e-36 Score=320.80 Aligned_cols=307 Identities=21% Similarity=0.194 Sum_probs=224.7
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHH-HHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAV-ESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~-~~~~ 224 (548)
.|+++++++.|++..++++|||+|.+||+.||+|.||||||||+++|.| +..|++|.|.++|+.+...+.... ..-+
T Consensus 4 ~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G--~~~P~~GeI~v~G~~v~~~sP~dA~~~GI 81 (501)
T COG3845 4 ALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFG--LYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81 (501)
T ss_pred eEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhC--cccCCcceEEECCEEeccCCHHHHHHcCC
Confidence 4889999999999999999999999999999999999999999999997 468999999999999877654321 1111
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHH--HHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEE--LKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~--l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
+...+++.++ ...++.+|+..-.+. ...++......++.++.+.+||+- ..+.++..||-|+||||.
T Consensus 82 GMVhQHF~Lv----------~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~v-dp~~~V~dLsVG~qQRVE 150 (501)
T COG3845 82 GMVHQHFMLV----------PTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPV-DPDAKVADLSVGEQQRVE 150 (501)
T ss_pred cEEeeccccc----------cccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCC-CccceeecCCcchhHHHH
Confidence 1122222222 234455544211110 001122345678889999999984 468999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKK 379 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~ 379 (548)
|-+||+.+|++|||||||+.|-|...+.|...|+++ ++|||+|||-+.++.++|||+-+|..|+++- .++.-.
T Consensus 151 IlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg---t~~~~~- 226 (501)
T COG3845 151 ILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG---TVDPVA- 226 (501)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe---eecCCC-
Confidence 999999999999999999999999999999988765 6899999999999999999999999999763 322100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceeeeecCCC
Q psy11936 380 MYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFPDP 459 (548)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f~~~ 459 (548)
+.-.++++++.-. . + +. .... ++ +
T Consensus 227 -------------~~t~~ela~lMvG----------------------------------~-~-v~----~~~~--~~-~ 250 (501)
T COG3845 227 -------------ETTEEELAELMVG----------------------------------R-E-VV----LRVV--KP-P 250 (501)
T ss_pred -------------CCCHHHHHHHhcC----------------------------------C-c-cc----cccc--cC-C
Confidence 0000111111100 0 0 00 0001 12 2
Q ss_pred CCCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecC--c--cceeeccCCCCCCCCCCee-eccce
Q psy11936 460 PPLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKP--R--EYVVKFSFPDPPPLQPPIL-GLHNV 525 (548)
Q Consensus 460 ~~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~--~--~~~~~~~~~~~~~~~~~~~-~~~n~ 525 (548)
...+.+||++++|+..-..+-+.+++|||.. +|+-.-|-|= | +.|+..|+|+.+|..|.|+ .++.+
T Consensus 251 ~~pg~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v 322 (501)
T COG3845 251 STPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDV 322 (501)
T ss_pred CCCCCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEec
Confidence 2346899999999997543346899999985 9999999883 4 7799999999877778754 45554
No 251
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-37 Score=291.45 Aligned_cols=215 Identities=24% Similarity=0.318 Sum_probs=167.7
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+++++|++|++|.+++|||||||||||||.+++.+ ...++|.|.+.+.++...+...+...+
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL--~~~d~G~i~i~g~~~~~~~s~~LAk~l- 77 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRL--LKKDSGEITIDGLELTSTPSKELAKKL- 77 (252)
T ss_pred CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHh--ccccCceEEEeeeecccCChHHHHHHH-
Confidence 47899999999999999999999999999999999999999999999964 467899999999998765544443322
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHH-HhcC--CCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEEL-KAIG--ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l-~~~~--~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
.++.+...+ ....++.+.+.. .++ ...| ..+.+..+.++++.|+|. .+.+++..+||||||||+.
T Consensus 78 ------SILkQ~N~i---~~rlTV~dLv~F--GRfPYSqGRlt~eD~~~I~~aieyl~L~-~l~dryLd~LSGGQrQRAf 145 (252)
T COG4604 78 ------SILKQENHI---NSRLTVRDLVGF--GRFPYSQGRLTKEDRRIINEAIEYLHLE-DLSDRYLDELSGGQRQRAF 145 (252)
T ss_pred ------HHHHhhchh---hheeEHHHHhhc--CCCcccCCCCchHHHHHHHHHHHHhccc-chHHHhHHhcccchhhhhh
Confidence 223222111 112222221110 000 0011 123456788999999998 4789999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh----hcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQ----GWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~----~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
+|..|+++.+.+|||||.|+||......+++.|+ ++++|||+|-||.+|+..++|+|+-|.+|+++. .|+.++
T Consensus 146 IAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~-~G~~~e 222 (252)
T COG4604 146 IAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVK-QGSPDE 222 (252)
T ss_pred hheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEe-cCCHHH
Confidence 9999999999999999999999987766666665 468999999999999999999999999999986 465544
No 252
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=5.3e-37 Score=336.83 Aligned_cols=218 Identities=16% Similarity=0.169 Sum_probs=160.7
Q ss_pred ccEEEEeEEEEe---CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC-CCCeEEEEeceeeccCchhHH
Q psy11936 145 VDIKVENFSISA---KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV-PPNIDILYCEQEVVADDLTAV 220 (548)
Q Consensus 145 ~~I~l~nls~~y---~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~-~~~g~I~~~~q~i~~~~~~~~ 220 (548)
.+|+++|++++| +++.+|+|+||+|.+|+++||+|||||||||||++|+|. .. |.+|+|.+.+.++......
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~--~~p~~~G~i~~~g~~~~~~~~~-- 331 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGA--YPGKFEGNVFINGKPVDIRNPA-- 331 (500)
T ss_pred ceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCC--CCCCCCeEEEECCEECCCCCHH--
Confidence 369999999999 346799999999999999999999999999999999985 24 3689999988766321110
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHH-HHHHHhcC---CCChHHHHHHHHHhCCCChhhhhcccCCCCHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEI-YEELKAIG---ADSAEPRARRILAGLGFSRAMQDRATKNFSGG 296 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~-~~~l~~~~---~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 296 (548)
.. . ....+++.+...........++.+++... ...+.... ......++.++|+.+++.....++++.+||||
T Consensus 332 ~~-~---~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 407 (500)
T TIGR02633 332 QA-I---RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGG 407 (500)
T ss_pred HH-H---hCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHH
Confidence 00 0 01112222221000112233444443221 11111000 01123567889999999643468999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|||||+|||||+.+|+||||||||++||+.++..+.++|..+ +.|||+||||++++..+||++++|++|+++..
T Consensus 408 qkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~ 484 (500)
T TIGR02633 408 NQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGD 484 (500)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999988877654 67999999999999999999999999999764
No 253
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-36 Score=310.41 Aligned_cols=220 Identities=20% Similarity=0.344 Sum_probs=163.0
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCC---CCCCeEEEEeceeeccCch--hHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK---VPPNIDILYCEQEVVADDL--TAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~---~~~~g~I~~~~q~i~~~~~--~~~ 220 (548)
+|.++||+++|+++.+|+++||+|.+|+++||+|+|||||||||++|+|...+ .|.+|.|.+.+..+..... ..+
T Consensus 45 ~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~ 124 (305)
T PRK14264 45 KLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVEL 124 (305)
T ss_pred eEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHH
Confidence 68999999999988999999999999999999999999999999999996321 2578999998876532111 111
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHH---------hcCC---CChHHHHHHHHHhCCCCh---hh
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELK---------AIGA---DSAEPRARRILAGLGFSR---AM 285 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~---------~~~~---~~~~~~~~~~L~~lgl~~---~~ 285 (548)
.. ...++.+.. ..+..++.+++........ ..+. ......+..+++.+++.. ..
T Consensus 125 ~~-------~i~~v~q~~----~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 193 (305)
T PRK14264 125 RK-------RVGMVFQSP----NPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDR 193 (305)
T ss_pred hh-------ceEEEccCC----ccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHH
Confidence 10 111111111 0112244444432111000 0001 112456788899998842 34
Q ss_pred hhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEE-EEE
Q psy11936 286 QDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEI-IHL 362 (548)
Q Consensus 286 ~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrI-i~L 362 (548)
.++++.+|||||+|||+|||||+.+|+||||||||++||+.++.+|.++|+++ +.|||+||||++++..+||++ ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 57889999999999999999999999999999999999999999999999876 469999999999999999997 578
Q ss_pred eCCEEEEEcCCHHHH
Q psy11936 363 DQQKLYYYKGNYSMF 377 (548)
Q Consensus 363 ~~G~i~~~~g~y~~f 377 (548)
++|+++.+ |+.+.+
T Consensus 274 ~~G~i~~~-g~~~~~ 287 (305)
T PRK14264 274 TGGELVEY-DDTDKI 287 (305)
T ss_pred cCCEEEEe-CCHHHH
Confidence 99999875 665544
No 254
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.7e-37 Score=292.37 Aligned_cols=174 Identities=29% Similarity=0.395 Sum_probs=132.2
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++||+++|+++.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++++........ . .
T Consensus 1 i~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~-~-~-- 74 (178)
T cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGL--EEPDSGSILIDGEDLTDLEDELP-P-L-- 74 (178)
T ss_pred CEEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEEccccchhHH-H-H--
Confidence 4689999999888899999999999999999999999999999999985 46778999998876532110000 0 0
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
.....+..+.. ......+. .+.+.+ .|||||+||++||||
T Consensus 75 -~~~i~~~~q~~---~~~~~~t~--------------------------~~~l~~----------~lS~G~~qr~~la~a 114 (178)
T cd03229 75 -RRRIGMVFQDF---ALFPHLTV--------------------------LENIAL----------GLSGGQQQRVALARA 114 (178)
T ss_pred -hhcEEEEecCC---ccCCCCCH--------------------------HHheee----------cCCHHHHHHHHHHHH
Confidence 00000000000 00000011 000111 199999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCE
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQK 366 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~ 366 (548)
|+.+|++|||||||++||+.++.++.++|.++ +.|+|+||||++++..+||+|++|++|+
T Consensus 115 l~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 115 LAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred HHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 99999999999999999999999999988764 5799999999999999999999999874
No 255
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-36 Score=292.75 Aligned_cols=218 Identities=21% Similarity=0.242 Sum_probs=169.0
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+..||...+|++|||++.+||+++|+|+||+||||||++|+|. ..+.+|+|.+.++++..........
T Consensus 3 mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl--~~~~~G~I~~~G~dit~~p~~~r~r--- 77 (237)
T COG0410 3 MLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGL--VRPRSGRIIFDGEDITGLPPHERAR--- 77 (237)
T ss_pred ceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCeeEEECCeecCCCCHHHHHh---
Confidence 68999999999999999999999999999999999999999999999984 4667899999999987654322110
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHH-HHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEP-RARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~-~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
....++++- ...+..+++.+|+..-... ........ ..+++++.|---.+..+++.++|||||||.++||
T Consensus 78 ---~Gi~~VPeg---R~iF~~LTVeENL~~g~~~---~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAia 148 (237)
T COG0410 78 ---LGIAYVPEG---RRIFPRLTVEENLLLGAYA---RRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIA 148 (237)
T ss_pred ---CCeEeCccc---ccchhhCcHHHHHhhhhhc---ccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHH
Confidence 011122221 2233456677766421111 11111112 2667777775434677899999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC----CeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK----KTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~----~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~ 378 (548)
|||+.+|++|||||||.+|-|.-+..+.+.|+.++ .|||+|.++..++..++||.++|++|+++. .|+-++..
T Consensus 149 RALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~-~G~~~eL~ 225 (237)
T COG0410 149 RALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVL-SGTAAELL 225 (237)
T ss_pred HHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEE-ecCHHHHh
Confidence 99999999999999999999999998888887653 499999999999999999999999999986 56655543
No 256
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=1.7e-36 Score=294.41 Aligned_cols=182 Identities=24% Similarity=0.375 Sum_probs=140.1
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++||+++|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|.....|.+|+|.++++++..........
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~---- 76 (200)
T cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERAR---- 76 (200)
T ss_pred CeEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhh----
Confidence 4689999999988899999999999999999999999999999999985213578899999988764322111000
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
....+.++... ..... .+.+.+ .....+|||||+|||+||||
T Consensus 77 --~~i~~v~q~~~---~~~~~-----------------------~~~~~l----------~~~~~~LS~G~~qrv~lara 118 (200)
T cd03217 77 --LGIFLAFQYPP---EIPGV-----------------------KNADFL----------RYVNEGFSGGEKKRNEILQL 118 (200)
T ss_pred --CcEEEeecChh---hccCc-----------------------cHHHHH----------hhccccCCHHHHHHHHHHHH
Confidence 00011111000 00000 011111 22346899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHh-hcCEEEEEeCCEEEEE
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDN-VCNEIIHLDQQKLYYY 370 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~-vadrIi~L~~G~i~~~ 370 (548)
|+.+|++|||||||++||+.++.++.++|.++ +.|||+|||+++++.. +||++++|++|+++..
T Consensus 119 l~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~ 186 (200)
T cd03217 119 LLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKS 186 (200)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999875 5799999999999988 7999999999999865
No 257
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.5e-36 Score=341.43 Aligned_cols=214 Identities=26% Similarity=0.320 Sum_probs=164.8
Q ss_pred ccEEEEeEEEEeCCc--eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 145 VDIKVENFSISAKGN--DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 145 ~~I~l~nls~~y~~~--~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
..|+++||+|+|+.. .+|+|+||+|++||++||||+||||||||+|+|+|. ..|..|+|.+++.++...+...+++
T Consensus 470 g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gl--y~p~~G~I~~dg~dl~~i~~~~lR~ 547 (709)
T COG2274 470 GEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL--YKPQQGRILLDGVDLNDIDLASLRR 547 (709)
T ss_pred ceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEeHHhcCHHHHHh
Confidence 369999999999765 699999999999999999999999999999999974 6899999999999987666655544
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh----------hhhcccCC
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA----------MQDRATKN 292 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~~~~~~~~ 292 (548)
.+....+.. ..+..+..+++. ........+.+.+++...|..+. ........
T Consensus 548 ~ig~V~Q~~-----------~Lf~gSI~eNi~-------l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~ 609 (709)
T COG2274 548 QVGYVLQDP-----------FLFSGSIRENIA-------LGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGAN 609 (709)
T ss_pred heeEEcccc-----------hhhcCcHHHHHh-------cCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCC
Confidence 333322211 123334443332 11122222334444443333322 22445678
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~--~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
||||||||++|||||+.+|+|||||||||+||+.+...+.+.|.++. +|+|+|||+.+.+. .||+|++|++|+|+..
T Consensus 610 LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~-~adrIiVl~~Gkiv~~ 688 (709)
T COG2274 610 LSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIR-SADRIIVLDQGKIVEQ 688 (709)
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhh-hccEEEEccCCceecc
Confidence 99999999999999999999999999999999999999999999885 89999999999996 5999999999999974
Q ss_pred cCCHHHHHHH
Q psy11936 371 KGNYSMFKKM 380 (548)
Q Consensus 371 ~g~y~~f~~~ 380 (548)
|+.++..+.
T Consensus 689 -gs~~ell~~ 697 (709)
T COG2274 689 -GSHEELLAQ 697 (709)
T ss_pred -CCHHHHHHh
Confidence 787776543
No 258
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.1e-36 Score=294.03 Aligned_cols=196 Identities=26% Similarity=0.319 Sum_probs=152.1
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||++.|++..+|+|+||+|.+|+++||+|+||||||||+++|+|. ..|.+|+|.+.+.++.. .. +.
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~--~~-~~---- 72 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL--LPPAAGTIKLDGGDIDD--PD-VA---- 72 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEeCcc--hh-hH----
Confidence 58999999999988899999999999999999999999999999999985 45788999998865421 00 10
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
....++.+. ....+..++.+++.... .+ .+ ....++.++++.+|+.. ..++++.+|||||+||++|||
T Consensus 73 ---~~~~~~~~~---~~~~~~~tv~~~l~~~~-~~--~~--~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~ 140 (207)
T PRK13539 73 ---EACHYLGHR---NAMKPALTVAENLEFWA-AF--LG--GEELDIAAALEAVGLAP-LAHLPFGYLSAGQKRRVALAR 140 (207)
T ss_pred ---hhcEEecCC---CcCCCCCcHHHHHHHHH-Hh--cC--CcHHHHHHHHHHcCCHH-HHcCChhhcCHHHHHHHHHHH
Confidence 011111110 11112344555443211 11 11 12346889999999974 568899999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeC
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQ 364 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~ 364 (548)
||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++.. |+++.+..
T Consensus 141 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~--~~~~~~~~ 200 (207)
T PRK13539 141 LLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG--ARELDLGP 200 (207)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc--CcEEeecC
Confidence 999999999999999999999999999999765 6799999999999986 99988854
No 259
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.7e-37 Score=290.20 Aligned_cols=170 Identities=31% Similarity=0.467 Sum_probs=132.4
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++||+++|++..+|+++||+|.+|++++|+|+|||||||||++|+|. ..|.+|+|.+.+..+.... ....
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~--~~~~~G~i~~~g~~~~~~~-~~~~----- 72 (173)
T cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGL--LKPDSGEIKVLGKDIKKEP-EEVK----- 72 (173)
T ss_pred CEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCeEEEECCEEcccch-Hhhh-----
Confidence 4689999999888899999999999999999999999999999999985 4578899998887653211 0000
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
....++++.. ......++.++ + .|||||+|||+||||
T Consensus 73 --~~i~~~~q~~---~~~~~~tv~~~-----------------------~---------------~LS~G~~qrv~lara 109 (173)
T cd03230 73 --RRIGYLPEEP---SLYENLTVREN-----------------------L---------------KLSGGMKQRLALAQA 109 (173)
T ss_pred --ccEEEEecCC---ccccCCcHHHH-----------------------h---------------hcCHHHHHHHHHHHH
Confidence 0001111100 00000011100 0 099999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
|+.+|++|||||||++||+.++.++.++|.++ +.|||+||||.+++..+||++++|++|++
T Consensus 110 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 110 LLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 99999999999999999999999999999876 47999999999999999999999999864
No 260
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-35 Score=299.85 Aligned_cols=221 Identities=20% Similarity=0.256 Sum_probs=163.8
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC---CCCeEEEEeceeeccCchhHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV---PPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~---~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
..+.++++++.|++..+|+++||+|.+|+++||+|+|||||||||++|+|...+. +.+|+|.+.++++........
T Consensus 7 ~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~- 85 (261)
T PRK14263 7 IVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV- 85 (261)
T ss_pred ceEEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH-
Confidence 4588999999999889999999999999999999999999999999999863221 368999999887642111100
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh---hhhcccCCCCHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA---MQDRATKNFSGGWR 298 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~---~~~~~~~~LSGGqk 298 (548)
. . .....+.++.. ..+..++.+++..... +... ......++.++++.+++... ..++++.+|||||+
T Consensus 86 ~-~---~~~i~~v~q~~----~~~~~tv~enl~~~~~-~~~~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~ 155 (261)
T PRK14263 86 V-V---RRYIGMVFQQP----NPFSMSIFDNVAFGLR-LNRY-KGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQ 155 (261)
T ss_pred h-h---hhceEEEecCC----ccccccHHHHHHHHHh-hcCc-hHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHH
Confidence 0 0 00111111111 1123444444432111 1000 11234567889999998532 34577889999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEe--------CCEEE
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLD--------QQKLY 368 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~--------~G~i~ 368 (548)
||++|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|+ +|+++
T Consensus 156 qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~ 235 (261)
T PRK14263 156 QRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLV 235 (261)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEE
Confidence 9999999999999999999999999999999999999876 4699999999999999999999996 89998
Q ss_pred EEcCCHHHH
Q psy11936 369 YYKGNYSMF 377 (548)
Q Consensus 369 ~~~g~y~~f 377 (548)
.. |+.+++
T Consensus 236 ~~-g~~~~~ 243 (261)
T PRK14263 236 EM-GPTAQI 243 (261)
T ss_pred Ee-CCHHHH
Confidence 75 565544
No 261
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=3.1e-36 Score=332.29 Aligned_cols=220 Identities=26% Similarity=0.322 Sum_probs=161.8
Q ss_pred ccEEEEeEEEEeC-----CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEe-ceee---ccC
Q psy11936 145 VDIKVENFSISAK-----GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYC-EQEV---VAD 215 (548)
Q Consensus 145 ~~I~l~nls~~y~-----~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~-~q~i---~~~ 215 (548)
.+|+++||+++|+ ++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+. +... ...
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl--~~p~~G~i~~~~g~~~~~~~~~ 355 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGV--LEPTSGEVNVRVGDEWVDMTKP 355 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCeEEEEecCCcccccccc
Confidence 3699999999994 25799999999999999999999999999999999985 35788999885 4321 110
Q ss_pred chhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh----hhhhcccC
Q psy11936 216 DLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR----AMQDRATK 291 (548)
Q Consensus 216 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~----~~~~~~~~ 291 (548)
....... . .....++++.. ......++.+++..... + .........++.++|+.+||.. ...++++.
T Consensus 356 ~~~~~~~-~---~~~i~~v~q~~---~l~~~~tv~e~l~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 426 (520)
T TIGR03269 356 GPDGRGR-A---KRYIGILHQEY---DLYPHRTVLDNLTEAIG-L-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPD 426 (520)
T ss_pred chhhHHH-H---hhhEEEEccCc---ccCCCCcHHHHHHHHHH-c-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChh
Confidence 0000000 0 00112222211 11223455555432111 1 1111112356788999999974 25689999
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG----WKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 292 ~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~----~~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
+|||||||||+|||||+.+|+||||||||++||+.++..+.++|.+ ++.|||+||||++++..+||+|++|++|++
T Consensus 427 ~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i 506 (520)
T TIGR03269 427 ELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKI 506 (520)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999998854 467999999999999999999999999999
Q ss_pred EEEcCCHHH
Q psy11936 368 YYYKGNYSM 376 (548)
Q Consensus 368 ~~~~g~y~~ 376 (548)
+.. |+.++
T Consensus 507 ~~~-g~~~~ 514 (520)
T TIGR03269 507 VKI-GDPEE 514 (520)
T ss_pred EEE-CCHHH
Confidence 864 55444
No 262
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=2.3e-36 Score=288.04 Aligned_cols=172 Identities=27% Similarity=0.377 Sum_probs=133.5
Q ss_pred EEEEeEEEEeCCc--eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 147 IKVENFSISAKGN--DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 147 I~l~nls~~y~~~--~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
|+++|++++|++. .+|+++||+|.+|++++|+|+|||||||||++|+|. ..|.+|+|.+.+..+... ...+
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~--~~~~~G~i~~~g~~~~~~-~~~~---- 73 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGD--LKPQQGEITLDGVPVSDL-EKAL---- 73 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhcc--CCCCCCEEEECCEEHHHH-HHHH----
Confidence 4689999999765 799999999999999999999999999999999985 467789998887654210 0000
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
.....++.+.. ..+..+ +.+ ..+.+|||||+||++||
T Consensus 74 ---~~~i~~~~q~~----~~~~~t-----------------------v~~-------------~i~~~LS~G~~qrv~la 110 (178)
T cd03247 74 ---SSLISVLNQRP----YLFDTT-----------------------LRN-------------NLGRRFSGGERQRLALA 110 (178)
T ss_pred ---HhhEEEEccCC----eeeccc-----------------------HHH-------------hhcccCCHHHHHHHHHH
Confidence 00000000000 000000 000 01678999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
|||+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++++. .||++++|++|++++
T Consensus 111 ral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~~~~l~~g~i~~ 176 (178)
T cd03247 111 RILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE-HMDKILFLENGKIIM 176 (178)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999875 579999999999996 699999999999975
No 263
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-35 Score=298.15 Aligned_cols=192 Identities=19% Similarity=0.220 Sum_probs=143.7
Q ss_pred eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHH
Q psy11936 160 DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAK 239 (548)
Q Consensus 160 ~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (548)
.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|.|.+.+.........
T Consensus 38 ~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl--~~p~~G~I~~~g~~~~~~~~~--------------------- 94 (264)
T PRK13546 38 FALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGS--LSPTVGKVDRNGEVSVIAISA--------------------- 94 (264)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--cCCCceEEEECCEEeEEeccc---------------------
Confidence 489999999999999999999999999999999985 467789888776421100000
Q ss_pred HhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCC
Q psy11936 240 LEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEP 319 (548)
Q Consensus 240 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEP 319 (548)
......++.+++.... .............+..++..+++.. ..++++.+|||||+|||+|||||+.+|+|||||||
T Consensus 95 --~~~~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEP 170 (264)
T PRK13546 95 --GLSGQLTGIENIEFKM-LCMGFKRKEIKAMTPKIIEFSELGE-FIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEA 170 (264)
T ss_pred --CCCCCCcHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCch-hhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCc
Confidence 0000112222221100 0001111112234556788888874 67889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHH
Q psy11936 320 TNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKK 379 (548)
Q Consensus 320 Tn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~ 379 (548)
|++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++.+ |+.+++..
T Consensus 171 t~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~-g~~~~~~~ 232 (264)
T PRK13546 171 LSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDY-GELDDVLP 232 (264)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEe-CCHHHHHH
Confidence 9999999999988888665 67999999999999999999999999999865 77666543
No 264
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=2.1e-36 Score=303.38 Aligned_cols=209 Identities=25% Similarity=0.309 Sum_probs=155.2
Q ss_pred EEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhh
Q psy11936 148 KVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKAD 227 (548)
Q Consensus 148 ~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~ 227 (548)
+++||++. .+|+|+||+|.+|+++||+|+|||||||||++|+|.. +.+|+|.+.++++..........
T Consensus 2 ~~~~l~~~----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~---~~~G~i~~~g~~i~~~~~~~~~~----- 69 (248)
T PRK03695 2 QLNDVAVS----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL---PGSGSIQFAGQPLEAWSAAELAR----- 69 (248)
T ss_pred cccccchh----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC---CCCeEEEECCEecCcCCHHHHhh-----
Confidence 46788875 3899999999999999999999999999999999852 45899999888764322111111
Q ss_pred HHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHH
Q psy11936 228 VKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARAL 307 (548)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL 307 (548)
...++++.. ...+..++.+++.... ...........++.++++.+|+. ...++++.+|||||+|||+|||||
T Consensus 70 --~i~~v~q~~---~~~~~~tv~~nl~~~~--~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al 141 (248)
T PRK03695 70 --HRAYLSQQQ---TPPFAMPVFQYLTLHQ--PDKTRTEAVASALNEVAEALGLD-DKLGRSVNQLSGGEWQRVRLAAVV 141 (248)
T ss_pred --heEEecccC---ccCCCccHHHHHHhcC--ccCCCcHHHHHHHHHHHHHcCCH-hHhcCCcccCCHHHHHHHHHHHHH
Confidence 011111110 1112234444332110 00001112245678899999997 456889999999999999999999
Q ss_pred cc-------CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 308 YI-------EPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 308 ~~-------~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
+. +|++|||||||++||+.++.++.++|..+ +.|||+||||++++..+||+|++|++|+++.. |+.+++
T Consensus 142 ~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~-g~~~~~ 220 (248)
T PRK03695 142 LQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLAS-GRRDEV 220 (248)
T ss_pred hccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE-CCHHHH
Confidence 97 67999999999999999999999998765 47999999999999999999999999999864 565543
No 265
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-37 Score=335.74 Aligned_cols=216 Identities=17% Similarity=0.229 Sum_probs=159.4
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||++.|+ .+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++...... .. .
T Consensus 265 ~l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl--~~p~~G~I~~~g~~~~~~~~~--~~-~- 336 (510)
T PRK09700 265 VFEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGV--DKRAGGEIRLNGKDISPRSPL--DA-V- 336 (510)
T ss_pred EEEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CcCCCCeEEECCEECCCCCHH--HH-H-
Confidence 699999999874 489999999999999999999999999999999985 367889999988766321110 00 0
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHH----HHh-cC---CCChHHHHHHHHHhCCCChhhhhcccCCCCHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEE----LKA-IG---ADSAEPRARRILAGLGFSRAMQDRATKNFSGGW 297 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~----l~~-~~---~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 297 (548)
.....++++...........++.+++...... +.. .+ ......++.++|+.+|+.....++++.+|||||
T Consensus 337 --~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 414 (510)
T PRK09700 337 --KKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGN 414 (510)
T ss_pred --HCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHH
Confidence 00112222210000111223444443211000 000 00 011234577899999996345789999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
||||+|||||+.+|+|||||||||+||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|+++...
T Consensus 415 ~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~ 491 (510)
T PRK09700 415 QQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQIL 491 (510)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEe
Confidence 99999999999999999999999999999999999998764 679999999999999999999999999998654
No 266
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=2e-36 Score=287.30 Aligned_cols=168 Identities=29% Similarity=0.450 Sum_probs=129.5
Q ss_pred EEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 147 IKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 147 I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
|+++|++++|++ ..+|+++||+|.+|++++|+|||||||||||++|+|. ..|.+|.|.+.+.++.......+..
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~~-- 76 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGL--LRPTSGRVRLDGADISQWDPNELGD-- 76 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhc--cCCCCCeEEECCEEcccCCHHHHHh--
Confidence 468999999975 5699999999999999999999999999999999985 4678899998887653221111000
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
...++.+.. ..+..+ + .+. + |||||+|||+||
T Consensus 77 -----~i~~~~q~~----~~~~~t-----------------------v---~~~-----------l--LS~G~~qrv~la 108 (173)
T cd03246 77 -----HVGYLPQDD----ELFSGS-----------------------I---AEN-----------I--LSGGQRQRLGLA 108 (173)
T ss_pred -----heEEECCCC----ccccCc-----------------------H---HHH-----------C--cCHHHHHHHHHH
Confidence 000000000 000000 0 000 0 999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
|||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++. +||+|++|++|++
T Consensus 109 ~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d~v~~l~~G~i 173 (173)
T cd03246 109 RALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-SADRILVLEDGRV 173 (173)
T ss_pred HHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEEECCCC
Confidence 9999999999999999999999999999998765 469999999999985 7999999999874
No 267
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=3.6e-36 Score=297.19 Aligned_cols=208 Identities=25% Similarity=0.327 Sum_probs=155.3
Q ss_pred cEEEEeEEEEeCC----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC---CCCeEEEEeceeeccCchh
Q psy11936 146 DIKVENFSISAKG----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV---PPNIDILYCEQEVVADDLT 218 (548)
Q Consensus 146 ~I~l~nls~~y~~----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~---~~~g~I~~~~q~i~~~~~~ 218 (548)
.+.++||++.|.+ +++|+|+||+|.+|+++||+||||||||||+++|+|. .. |.+|+|.+.++++.. .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~--~~~~~~~~G~i~~~g~~~~~---~ 77 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGR--VEGGGTTSGQILFNGQPRKP---D 77 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCc--cCCCCCCceEEEECCEECCh---H
Confidence 3678999999964 5799999999999999999999999999999999985 24 678999998876521 0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC-C--ChHHHHHH-HHHhCCCChhhhhcccCCCC
Q psy11936 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA-D--SAEPRARR-ILAGLGFSRAMQDRATKNFS 294 (548)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~--~~~~~~~~-~L~~lgl~~~~~~~~~~~LS 294 (548)
... ....++++. ...+...++.+++.... ....... . ....++.. +|..+++. ...++.+.+||
T Consensus 78 ~~~-------~~i~~~~q~---~~~~~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS 145 (226)
T cd03234 78 QFQ-------KCVAYVRQD---DILLPGLTVRETLTYTA-ILRLPRKSSDAIRKKRVEDVLLRDLALT-RIGGNLVKGIS 145 (226)
T ss_pred Hhc-------ccEEEeCCC---CccCcCCcHHHHHHHHH-HhhcccccchHHHHHHHHHHHHHhhcch-hhhcccccCcC
Confidence 000 011111111 11122335555543211 1110000 1 11223445 88999987 35688899999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCH-HHHHhhcCEEEEEeCCEEEEE
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQ-SFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~-~~l~~vadrIi~L~~G~i~~~ 370 (548)
|||+|||+|||||+.+|++|||||||++||+.++..+.++|.++ +.|||+|||+. ..+..+||+|++|++|+++..
T Consensus 146 ~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~ 225 (226)
T cd03234 146 GGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYS 225 (226)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEec
Confidence 99999999999999999999999999999999999999998764 57999999998 688899999999999999753
No 268
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=3e-36 Score=330.18 Aligned_cols=219 Identities=22% Similarity=0.298 Sum_probs=158.9
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccC-chhHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVAD-DLTAVESV 223 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~-~~~~~~~~ 223 (548)
.+|+++||++.|+++.+|+|+||+|.+|+++||+|||||||||||++|+|. .+.+.+|+|.+.+..+... ......
T Consensus 259 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~-~~~~~~G~i~~~g~~~~~~~~~~~~~-- 335 (490)
T PRK10938 259 PRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGD-HPQGYSNDLTLFGRRRGSGETIWDIK-- 335 (490)
T ss_pred ceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCC-CCcccCCeEEEecccCCCCCCHHHHH--
Confidence 469999999999988899999999999999999999999999999999984 2222589999988654211 111011
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHH-HHhcCC--CChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEE-LKAIGA--DSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~-l~~~~~--~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqR 300 (548)
....++.+...+.. ....+..+.+...... ...... .....++.++|+.+|+.....++++.+||||||||
T Consensus 336 -----~~i~~v~q~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr 409 (490)
T PRK10938 336 -----KHIGYVSSSLHLDY-RVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRL 409 (490)
T ss_pred -----hhceEECHHHHhhc-ccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHH
Confidence 11122222110000 0011111111100000 000001 11235678999999997536789999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---C-CeEEEEecCHHHHHh-hcCEEEEEeCCEEEEEcC
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---K-KTLLIVSHDQSFLDN-VCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~-~TvIiVSHD~~~l~~-vadrIi~L~~G~i~~~~g 372 (548)
|+|||||+.+|+||||||||++||+.++.++.++|.++ + .|||+||||++++.. +||++++|++|+++.+..
T Consensus 410 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~~ 486 (490)
T PRK10938 410 ALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYVQ 486 (490)
T ss_pred HHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEeec
Confidence 99999999999999999999999999999999999875 2 479999999999987 599999999999988743
No 269
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-36 Score=291.24 Aligned_cols=180 Identities=23% Similarity=0.311 Sum_probs=137.8
Q ss_pred cEEEEeEEEEeCC----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 146 DIKVENFSISAKG----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~~----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
.|+++|+++.|++ +.+|+++||+|.+|++++|+|||||||||||++|+|.....|.+|+|.++++++. ....
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 5889999999975 6799999999999999999999999999999999985323478899998887652 0000
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
....+..+. ....+..++.+++... . . ..+|||||+|||
T Consensus 79 -------~~i~~~~q~---~~~~~~~tv~~~l~~~-----------------~----------~----~~~LSgGe~qrv 117 (192)
T cd03232 79 -------RSTGYVEQQ---DVHSPNLTVREALRFS-----------------A----------L----LRGLSVEQRKRL 117 (192)
T ss_pred -------hceEEeccc---CccccCCcHHHHHHHH-----------------H----------H----HhcCCHHHhHHH
Confidence 011111111 0111122333322100 0 0 018999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHH-HHHhhcCEEEEEeC-CEEEEE
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQS-FLDNVCNEIIHLDQ-QKLYYY 370 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~-~l~~vadrIi~L~~-G~i~~~ 370 (548)
+|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||.+ .+..+||+|++|++ |+++++
T Consensus 118 ~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~ 191 (192)
T cd03232 118 TIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYF 191 (192)
T ss_pred HHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeC
Confidence 9999999999999999999999999999999998765 579999999998 47788999999999 999864
No 270
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=7.7e-36 Score=290.88 Aligned_cols=196 Identities=22% Similarity=0.322 Sum_probs=147.3
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++|++++|++ ..+|+++||+|.+|++++|+|+|||||||||++|+|. ..|.+|+|.+.+..+..........
T Consensus 6 ~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~~~- 82 (207)
T cd03369 6 EIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRF--LEAEEGKIEIDGIDISTIPLEDLRS- 82 (207)
T ss_pred eEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcc--cCCCCCeEEECCEEhHHCCHHHHHh-
Confidence 4889999999975 4799999999999999999999999999999999985 4678899999887653221111110
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
...++.+.. ..+..++.+++. ..... ....+.++++ .++++.+|||||+|||+|
T Consensus 83 ------~i~~v~q~~----~~~~~tv~~~l~-------~~~~~-~~~~~~~~l~--------~~~~~~~LS~G~~qrv~l 136 (207)
T cd03369 83 ------SLTIIPQDP----TLFSGTIRSNLD-------PFDEY-SDEEIYGALR--------VSEGGLNLSQGQRQLLCL 136 (207)
T ss_pred ------hEEEEecCC----cccCccHHHHhc-------ccCCC-CHHHHHHHhh--------ccCCCCcCCHHHHHHHHH
Confidence 111111111 111223333321 11111 1223334443 256789999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
||||+.+|++|||||||++||+.++.++.++|.++ +.|+|+||||.+++.. ||++++|++|++..++
T Consensus 137 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~-~d~v~~l~~g~i~~~g 205 (207)
T cd03369 137 ARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID-YDKILVMDAGEVKEYD 205 (207)
T ss_pred HHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999875 4799999999999976 9999999999998653
No 271
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-36 Score=316.66 Aligned_cols=212 Identities=29% Similarity=0.414 Sum_probs=165.5
Q ss_pred cEEEEeEEEEeCCce--eeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKGND--LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~~~--iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.++++||||+|.++. +|+|+||++.+||+++|+|++|||||||+.+|+|. ..|.+|+|...+.++...+...++..
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~--~~~~~G~i~~~g~~~~~l~~~~~~e~ 413 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGA--WDPQQGSITLNGVEIASLDEQALRET 413 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhc--cCCCCCeeeECCcChhhCChhhHHHH
Confidence 689999999997754 99999999999999999999999999999999984 57889999999988865443333322
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhc----------ccCCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDR----------ATKNF 293 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~----------~~~~L 293 (548)
+....++..+ |..+..+|+ ..-..+..++.+.++|+.+|+.+...+. ....|
T Consensus 414 i~vl~Qr~hl-----------F~~Tlr~NL-------~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~L 475 (573)
T COG4987 414 ISVLTQRVHL-----------FSGTLRDNL-------RLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRL 475 (573)
T ss_pred HhhhccchHH-----------HHHHHHHHH-------hhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcC
Confidence 2222222211 223333332 2223444566777788888876433332 34679
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
||||+||++|||+|+++.+++||||||.|||+.+...+...|.+. ++|+|+|||++..+.. ||+|++|++|+++. .
T Consensus 476 SGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~-~drIivl~~Gkiie-~ 553 (573)
T COG4987 476 SGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLER-MDRIIVLDNGKIIE-E 553 (573)
T ss_pred CchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhh-cCEEEEEECCeeee-c
Confidence 999999999999999999999999999999999999998888654 5799999999999964 99999999999997 4
Q ss_pred CCHHHHHH
Q psy11936 372 GNYSMFKK 379 (548)
Q Consensus 372 g~y~~f~~ 379 (548)
|+|.+...
T Consensus 554 G~~~~Ll~ 561 (573)
T COG4987 554 GTHAELLA 561 (573)
T ss_pred CCHHhhhc
Confidence 88877543
No 272
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=9e-36 Score=338.81 Aligned_cols=210 Identities=27% Similarity=0.398 Sum_probs=165.1
Q ss_pred cEEEEeEEEEeC--CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAK--GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~--~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+|+|+ ++++|+|+||+|++|+++||+|+||||||||+++|+|. ..|.+|+|.+++.++...+...++..
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl--~~p~~G~I~idg~~i~~~~~~~lr~~ 528 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGF--ETPESGSVFYDGQDLAGLDVQAVRRQ 528 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCEEEECCEEcCcCCHHHHHhc
Confidence 599999999995 35799999999999999999999999999999999984 57889999999998865554443332
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhh----------hcccCCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQ----------DRATKNF 293 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~----------~~~~~~L 293 (548)
+.. +.|. ...+..+..+|+.. +....++++.++++..|+.+... ......|
T Consensus 529 i~~-------v~Q~----~~lf~gTI~eNi~~--------~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~L 589 (686)
T TIGR03797 529 LGV-------VLQN----GRLMSGSIFENIAG--------GAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTL 589 (686)
T ss_pred cEE-------EccC----CccCcccHHHHHhc--------CCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCC
Confidence 222 2221 12234455554421 11134556677777777753221 1234679
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCC
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~ 373 (548)
|||||||++|||||+.+|++||||||||+||+.+...+.+.|.++++|+|+|||+++.+.. ||+|++|++|+++.. |+
T Consensus 590 SGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~-~D~Iivl~~G~iv~~-G~ 667 (686)
T TIGR03797 590 SGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRN-ADRIYVLDAGRVVQQ-GT 667 (686)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHc-CCEEEEEECCEEEEE-CC
Confidence 9999999999999999999999999999999999999999999988999999999999865 999999999999975 78
Q ss_pred HHHHH
Q psy11936 374 YSMFK 378 (548)
Q Consensus 374 y~~f~ 378 (548)
+++..
T Consensus 668 ~~~Ll 672 (686)
T TIGR03797 668 YDELM 672 (686)
T ss_pred HHHHH
Confidence 77653
No 273
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=5.8e-36 Score=289.94 Aligned_cols=194 Identities=25% Similarity=0.336 Sum_probs=147.4
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++||++.|+++.+|+++||+|.+|+++||+||||||||||+++|+|. ..|.+|+|.+.+.++.... ....
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~-~~~~----- 72 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGL--LRPDSGEVRWNGTALAEQR-DEPH----- 72 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCccEEEECCEEcccch-HHhh-----
Confidence 4689999999999999999999999999999999999999999999985 4678899998887653211 0000
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
....++.+. .......++.+++.... .+ .. . ...++.++++.+|+.. ..++++.+|||||+|||+||||
T Consensus 73 --~~i~~~~q~---~~~~~~~tv~~~l~~~~-~~--~~-~-~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~a 141 (198)
T TIGR01189 73 --RNILYLGHL---PGLKPELSALENLHFWA-AI--HG-G-AQRTIEDALAAVGLTG-FEDLPAAQLSAGQQRRLALARL 141 (198)
T ss_pred --hheEEeccC---cccccCCcHHHHHHHHH-HH--cC-C-cHHHHHHHHHHcCCHH-HhcCChhhcCHHHHHHHHHHHH
Confidence 011111111 01112234555443211 11 11 1 2446788999999974 5688999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEE
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIH 361 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~ 361 (548)
|+.+|++|||||||++||+.++.++.++|.++ +.|||+||||...+ .|++++.
T Consensus 142 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~--~~~~~~~ 197 (198)
T TIGR01189 142 WLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL--VEARELR 197 (198)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc--cceEEee
Confidence 99999999999999999999999999999875 57999999998654 4787765
No 274
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=4.6e-36 Score=287.14 Aligned_cols=176 Identities=23% Similarity=0.344 Sum_probs=132.9
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++|++++| +|+++||+|.+|++++|+|+|||||||||++|+|. ..|.+|+|.+.+.++........ .
T Consensus 4 ~l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~---~- 73 (182)
T cd03215 4 VLEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGL--RPPASGEITLDGKPVTRRSPRDA---I- 73 (182)
T ss_pred EEEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEECCccCHHHH---H-
Confidence 58999999999 99999999999999999999999999999999985 46788999998876643221100 0
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
.....+..+........+..++.+++. +. ..|||||+|||+|||
T Consensus 74 --~~~i~~~~q~~~~~~~~~~~t~~e~l~--------------------------~~--------~~LS~G~~qrl~la~ 117 (182)
T cd03215 74 --RAGIAYVPEDRKREGLVLDLSVAENIA--------------------------LS--------SLLSGGNQQKVVLAR 117 (182)
T ss_pred --hCCeEEecCCcccCcccCCCcHHHHHH--------------------------HH--------hhcCHHHHHHHHHHH
Confidence 000111111000000011112222110 00 009999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
||+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++++..+||++++|++|++
T Consensus 118 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 118 WLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999998875 57999999999999999999999999874
No 275
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=7.1e-36 Score=296.01 Aligned_cols=203 Identities=21% Similarity=0.288 Sum_probs=147.4
Q ss_pred eeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCC----CCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHH
Q psy11936 161 LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVP----PNIDILYCEQEVVADDLTAVESVLKADVKRTELLAE 236 (548)
Q Consensus 161 iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~----~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~ 236 (548)
+|+|+||+|.+|++++|+|||||||||||++|+|. ..| .+|+|.+.+.++.... ... ....++.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~~~~~G~i~~~g~~~~~~~--~~~-------~~i~~~~q 69 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGL--LPPGLTQTSGEILLDGRPLLPLS--IRG-------RHIATIMQ 69 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCccCccccEEEECCEechhhh--hhh-------heeEEEec
Confidence 57899999999999999999999999999999985 345 7899999887653210 000 00111111
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh--hhhhcccCCCCHHHHHHHHHHHHHccCCCEE
Q psy11936 237 CAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR--AMQDRATKNFSGGWRMRVSLARALYIEPTLL 314 (548)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~--~~~~~~~~~LSGGqkqRvaLAraL~~~P~lL 314 (548)
.... ......+..+++...... ..........++.++++.+|+.. ...++++.+|||||+|||+|||||+.+|+||
T Consensus 70 ~~~~-~~~~~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vl 147 (230)
T TIGR02770 70 NPRT-AFNPLFTMGNHAIETLRS-LGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFL 147 (230)
T ss_pred Cchh-hcCcccCHHHHHHHHHHH-cCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 1000 000112233332211110 00001122456788999999973 4568899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 315 LLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 315 LLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++.. |..+++
T Consensus 148 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~-~~~~~~ 213 (230)
T TIGR02770 148 IADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVER-GTVKEI 213 (230)
T ss_pred EEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHHHH
Confidence 999999999999999998888754 57999999999999999999999999999865 555544
No 276
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-36 Score=284.88 Aligned_cols=203 Identities=28% Similarity=0.354 Sum_probs=160.4
Q ss_pred cEEEEeEEEEeCCce--eeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKGND--LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~~~--iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
++.+.+++.+|++++ +|+|+|++|.+||.++++|||||||||||++++|. ..|..|+|..++..+...+...
T Consensus 3 ~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf--~~P~~G~i~l~~r~i~gPgaer---- 76 (259)
T COG4525 3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGF--VTPSRGSIQLNGRRIEGPGAER---- 76 (259)
T ss_pred eeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcC--cCcccceEEECCEeccCCCccc----
Confidence 467889999999877 99999999999999999999999999999999984 5788999999988776543211
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHH--hcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELK--AIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~--~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
+-.++...+++.. ++.+|+ ...+. .+.......++.++|..+|+.+ ..++++.+|||||||||
T Consensus 77 -gvVFQ~~~LlPWl----------~~~dNv---afgL~l~Gi~k~~R~~~a~q~l~~VgL~~-~~~~~i~qLSGGmrQRv 141 (259)
T COG4525 77 -GVVFQNEALLPWL----------NVIDNV---AFGLQLRGIEKAQRREIAHQMLALVGLEG-AEHKYIWQLSGGMRQRV 141 (259)
T ss_pred -eeEeccCccchhh----------HHHHHH---HHHHHhcCCCHHHHHHHHHHHHHHhCccc-ccccceEeecchHHHHH
Confidence 0111222222222 222322 22233 3333444567889999999985 45899999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCeEEEEecCHHHHHhhcCEEEEEeC--CEEEE
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG----WKKTLLIVSHDQSFLDNVCNEIIHLDQ--QKLYY 369 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~----~~~TvIiVSHD~~~l~~vadrIi~L~~--G~i~~ 369 (548)
.|||||+.+|++||||||+++||.-+++.+..+|-+ .++.+++||||.+++--+++++++|+. |+|+.
T Consensus 142 GiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~ 215 (259)
T COG4525 142 GIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVE 215 (259)
T ss_pred HHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeE
Confidence 999999999999999999999999888877776644 478999999999999999999999984 78775
No 277
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-36 Score=330.41 Aligned_cols=217 Identities=15% Similarity=0.219 Sum_probs=157.2
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.+|+++||++.| +.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|.|.+.+.++....... ..
T Consensus 249 ~~i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~~~~~~---~~ 321 (491)
T PRK10982 249 VILEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGI--REKSAGTITLHGKKINNHNANE---AI 321 (491)
T ss_pred cEEEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCC--CcCCccEEEECCEECCCCCHHH---HH
Confidence 369999999984 4699999999999999999999999999999999985 4678899999887664221110 00
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHH-HHHHHHHHh-cC---CCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQL-KEIYEELKA-IG---ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRM 299 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l-~~~~~~l~~-~~---~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkq 299 (548)
. ....++++.......+...+..++. ......+.. .+ .......+..+++.+++.....++++.+|||||||
T Consensus 322 ~---~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~q 398 (491)
T PRK10982 322 N---HGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQ 398 (491)
T ss_pred H---CCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHH
Confidence 0 0011111111000011112221110 000000000 11 11224567889999999633568999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 300 RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG---WKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 300 RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~---~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
||+|||||+.+|+||||||||+|||+.++..+.++|.. .+.|||+||||++++..+||++++|++|+++.+.
T Consensus 399 rv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~ 473 (491)
T PRK10982 399 KVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIV 473 (491)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEE
Confidence 99999999999999999999999999999999888854 4789999999999999999999999999998643
No 278
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.9e-36 Score=291.74 Aligned_cols=194 Identities=22% Similarity=0.244 Sum_probs=149.2
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|++..+|+++||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.++++.. ....+.
T Consensus 1 ml~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~--~~~~~G~v~~~g~~~~~-~~~~~~---- 73 (200)
T PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGL--LNPEKGEILFERQSIKK-DLCTYQ---- 73 (200)
T ss_pred CEEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCeeEEECCCcccc-CHHHHH----
Confidence 37899999999988999999999999999999999999999999999985 46788999998876532 111000
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
....++.+. ....+..++.+++.... . . ......+.++++.+++.. ..++++.+|||||+|||+|||
T Consensus 74 ---~~i~~~~q~---~~~~~~~tv~~~~~~~~---~-~--~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~~rv~lar 140 (200)
T PRK13540 74 ---KQLCFVGHR---SGINPYLTLRENCLYDI---H-F--SPGAVGITELCRLFSLEH-LIDYPCGLLSSGQKRQVALLR 140 (200)
T ss_pred ---hheEEeccc---cccCcCCCHHHHHHHHH---h-c--CcchHHHHHHHHHcCCch-hhhCChhhcCHHHHHHHHHHH
Confidence 111111111 11112345555443211 0 1 112356788999999974 568889999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEE
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEII 360 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi 360 (548)
||+.+|++|||||||++||+.++.++.++|.++ +.|||+|||+.++++. ||.-+
T Consensus 141 al~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~-~d~~~ 197 (200)
T PRK13540 141 LWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK-ADYEE 197 (200)
T ss_pred HHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc-cchhh
Confidence 999999999999999999999999999999864 5799999999999976 88654
No 279
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.3e-35 Score=338.77 Aligned_cols=211 Identities=25% Similarity=0.325 Sum_probs=162.4
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+|+|++ +++|+|+||+|++|+++||||+||||||||+++|+|. ..|.+|.|.+++.++...+...++..
T Consensus 477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl--~~p~~G~I~idg~~i~~~~~~~lr~~ 554 (710)
T TIGR03796 477 YVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGL--YQPWSGEILFDGIPREEIPREVLANS 554 (710)
T ss_pred eEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCEeHHHCCHHHHHhh
Confidence 5999999999974 5799999999999999999999999999999999984 57889999999988755444333332
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhh----------hhcccCCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAM----------QDRATKNF 293 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~----------~~~~~~~L 293 (548)
+....+.. ..+..+..+++. .......++++.++++..|+.+.. .......|
T Consensus 555 i~~v~Q~~-----------~lf~gTi~eNi~-------l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~L 616 (710)
T TIGR03796 555 VAMVDQDI-----------FLFEGTVRDNLT-------LWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANL 616 (710)
T ss_pred eeEEecCC-----------hhhhccHHHHhh-------CCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCC
Confidence 22222111 122334444331 111223345556666666554221 22334679
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCC
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~ 373 (548)
|||||||++|||||+.+|++||||||||+||..+...+.+.|...++|+|+|||+++.+.. ||+|++|++|+++.. |+
T Consensus 617 SGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~-~D~Iivl~~G~i~~~-G~ 694 (710)
T TIGR03796 617 SGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRD-CDEIIVLERGKVVQR-GT 694 (710)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEeCCEEEEe-cC
Confidence 9999999999999999999999999999999999999999998888999999999999865 999999999999964 78
Q ss_pred HHHHH
Q psy11936 374 YSMFK 378 (548)
Q Consensus 374 y~~f~ 378 (548)
+++..
T Consensus 695 ~~~Ll 699 (710)
T TIGR03796 695 HEELW 699 (710)
T ss_pred HHHHH
Confidence 77654
No 280
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.4e-35 Score=297.12 Aligned_cols=209 Identities=19% Similarity=0.266 Sum_probs=151.5
Q ss_pred ccEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 145 VDIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 145 ~~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
..|+++||+++|++ ..+|+++||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+.++.......+..
T Consensus 18 ~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRM--VDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred ceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcc--cCCCCCeEEECCEEhhhCCHHHHhh
Confidence 46999999999976 5799999999999999999999999999999999985 4678899999887664322111111
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHH---------HHHHhC--CCChhhhhcccC
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRAR---------RILAGL--GFSRAMQDRATK 291 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~---------~~L~~l--gl~~~~~~~~~~ 291 (548)
.+....+... .+..++.+++. . ........+. .++..+ |+.. ..+.++.
T Consensus 96 ~i~~v~q~~~-----------l~~~tv~~nl~-------~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~-~~~~~~~ 155 (257)
T cd03288 96 RLSIILQDPI-----------LFSGSIRFNLD-------P-ECKCTDDRLWEALEIAQLKNMVKSLPGGLDA-VVTEGGE 155 (257)
T ss_pred hEEEECCCCc-----------ccccHHHHhcC-------c-CCCCCHHHHHHHHHHhCcHHHHhhcccccCc-EeccCCC
Confidence 1111111100 11112111110 0 0000111222 333333 4442 3455678
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 292 ~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
+|||||+||++|||||+.+|++|||||||++||+.+..++.++|..+ +.|||+|||+++.+.. ||+|++|++|+++.
T Consensus 156 ~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~dri~~l~~G~i~~ 234 (257)
T cd03288 156 NFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILD-ADLVLVLSRGILVE 234 (257)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHh-CCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998764 5799999999999976 99999999999986
Q ss_pred EcCCHHHH
Q psy11936 370 YKGNYSMF 377 (548)
Q Consensus 370 ~~g~y~~f 377 (548)
. |+.+++
T Consensus 235 ~-g~~~~~ 241 (257)
T cd03288 235 C-DTPENL 241 (257)
T ss_pred e-CCHHHH
Confidence 4 666654
No 281
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8e-36 Score=282.68 Aligned_cols=167 Identities=31% Similarity=0.473 Sum_probs=129.2
Q ss_pred EEEEeEEEEeCCc--eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 147 IKVENFSISAKGN--DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 147 I~l~nls~~y~~~--~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
|+++|++++|++. .+|+++||+|.+|++++|+|||||||||||++|+|. ..|.+|+|.+.++.+.......+..
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~--~~~~~G~i~~~g~~~~~~~~~~~~~-- 76 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRL--YDPTSGEILIDGVDLRDLDLESLRK-- 76 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcC--CCCCCCEEEECCEEhhhcCHHHHHh--
Confidence 4689999999876 799999999999999999999999999999999985 4577899998887653211110000
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
...++.+.. ..+.. .+.+. + |||||+|||+||
T Consensus 77 -----~i~~~~~~~----~~~~~-----------------------t~~e~--------------l--LS~G~~~rl~la 108 (171)
T cd03228 77 -----NIAYVPQDP----FLFSG-----------------------TIREN--------------I--LSGGQRQRIAIA 108 (171)
T ss_pred -----hEEEEcCCc----hhccc-----------------------hHHHH--------------h--hCHHHHHHHHHH
Confidence 000000000 00000 00000 0 999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCE
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQK 366 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~ 366 (548)
|||+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++++.. ||++++|++|+
T Consensus 109 ~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 109 RALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh-CCEEEEEcCCC
Confidence 9999999999999999999999999999999876 4699999999999987 99999999874
No 282
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.8e-36 Score=276.18 Aligned_cols=207 Identities=23% Similarity=0.342 Sum_probs=168.7
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
.+++.++.+.-++..+|+++||++.+||+++|+||||||||||+|+++. +..|++|.+.|.|+++...+...++..+
T Consensus 3 lle~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~--Lisp~~G~l~f~Ge~vs~~~pea~Rq~V- 79 (223)
T COG4619 3 LLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVAS--LISPTSGTLLFEGEDVSTLKPEAYRQQV- 79 (223)
T ss_pred chHHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHh--ccCCCCceEEEcCccccccChHHHHHHH-
Confidence 3566777777788999999999999999999999999999999999995 4578999999999998766655544332
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
.++.+.. ..|..++.+++...+ ...........+..+|.+++++...+++.+.+|||||+||++|+|
T Consensus 80 ------sY~~Q~p----aLfg~tVeDNlifP~---~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR 146 (223)
T COG4619 80 ------SYCAQTP----ALFGDTVEDNLIFPW---QIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIR 146 (223)
T ss_pred ------HHHHcCc----cccccchhhccccch---HHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHH
Confidence 2333221 234455555543222 112233456778899999999999999999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLY 368 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~ 368 (548)
-|..-|+||||||||++||+.+...++++|..| +.+++.||||-+...+.+|++|-+..|.+-
T Consensus 147 ~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 147 NLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred HhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 999999999999999999999999988888766 479999999999988999999999998763
No 283
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=2.7e-35 Score=271.83 Aligned_cols=144 Identities=43% Similarity=0.671 Sum_probs=128.2
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++|++++|++..+|+++||++++|++++|+|+||||||||+++|+|. ..|.+|+|.+.+...
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~--~~~~~G~i~~~~~~~-------------- 64 (144)
T cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGE--LEPDEGIVTWGSTVK-------------- 64 (144)
T ss_pred CEEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCC--CCCCceEEEECCeEE--------------
Confidence 4689999999888899999999999999999999999999999999985 467788887765310
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
+++ +.+|||||+||++||||
T Consensus 65 ----------------------------------------------------i~~--------~~~lS~G~~~rv~lara 84 (144)
T cd03221 65 ----------------------------------------------------IGY--------FEQLSGGEKMRLALAKL 84 (144)
T ss_pred ----------------------------------------------------EEE--------EccCCHHHHHHHHHHHH
Confidence 000 01199999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCE
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQK 366 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~ 366 (548)
|+.+|++|||||||++||+.++.++.++|++++.|||+|||+.+++..+||++++|++|+
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999988999999999999999999999999885
No 284
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=2.6e-35 Score=284.94 Aligned_cols=181 Identities=25% Similarity=0.380 Sum_probs=137.9
Q ss_pred cEEEEeEEEEeCC------ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhH
Q psy11936 146 DIKVENFSISAKG------NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTA 219 (548)
Q Consensus 146 ~I~l~nls~~y~~------~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~ 219 (548)
.|+++||+++|++ ..+|+++||+|.+|++++|+|||||||||||++|+|.....|.+|+|.++++++... .
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~---~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKR---S 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchH---h
Confidence 3789999999975 679999999999999999999999999999999998420167889999988865320 0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHH
Q psy11936 220 VESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRM 299 (548)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkq 299 (548)
+. ....+..+.. ......+..+++.. .. ...+|||||+|
T Consensus 80 ~~-------~~i~~~~q~~---~~~~~~t~~~~i~~--------------------~~-----------~~~~LS~G~~q 118 (194)
T cd03213 80 FR-------KIIGYVPQDD---ILHPTLTVRETLMF--------------------AA-----------KLRGLSGGERK 118 (194)
T ss_pred hh-------heEEEccCcc---cCCCCCcHHHHHHH--------------------HH-----------HhccCCHHHHH
Confidence 00 0111111110 01111222222110 00 01189999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHH-HHHhhcCEEEEEeCCEEEEE
Q psy11936 300 RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQS-FLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 300 RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~-~l~~vadrIi~L~~G~i~~~ 370 (548)
||+|||||+.+|++|||||||++||+.++..+.++|.++ +.|||+||||.. .+..+||++++|++|+++..
T Consensus 119 rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~ 193 (194)
T cd03213 119 RVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYF 193 (194)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEec
Confidence 999999999999999999999999999999999998765 479999999996 78889999999999999753
No 285
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.9e-35 Score=330.45 Aligned_cols=211 Identities=25% Similarity=0.315 Sum_probs=160.4
Q ss_pred cEEEEeEEEEe-CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISA-KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y-~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.|+++||++.| +++++|+|+||+|++|+++||||+||||||||+++|+|. . |.+|.|.++++++...+...++..+
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~--~-p~~G~I~i~g~~i~~~~~~~lr~~i 425 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGF--L-PYQGSLKINGIELRELDPESWRKHL 425 (588)
T ss_pred eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--C-CCCcEEEECCEecccCCHHHHHhhe
Confidence 49999999765 567899999999999999999999999999999999985 4 7899999999887654443333222
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh----------hhhhcccCCCC
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR----------AMQDRATKNFS 294 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~----------~~~~~~~~~LS 294 (548)
. +++|. ...|+.+..+|+.. ...+..++++.++++..++.+ .........||
T Consensus 426 ~-------~v~Q~----~~LF~~TI~eNI~~-------g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LS 487 (588)
T PRK11174 426 S-------WVGQN----PQLPHGTLRDNVLL-------GNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLS 487 (588)
T ss_pred E-------EecCC----CcCCCcCHHHHhhc-------CCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCC
Confidence 2 22221 12344555555421 112233445555555554432 12233456799
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
||||||++|||||+.+|+|||||||||+||..+...+.+.|.++ +.|+|+|||+++.+.. ||+|++|++|+++. .|
T Consensus 488 GGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~-aD~Iivl~~G~i~e-~G 565 (588)
T PRK11174 488 VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ-WDQIWVMQDGQIVQ-QG 565 (588)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHh-CCEEEEEeCCeEee-cC
Confidence 99999999999999999999999999999999999999988876 4799999999998865 99999999999986 58
Q ss_pred CHHHHHH
Q psy11936 373 NYSMFKK 379 (548)
Q Consensus 373 ~y~~f~~ 379 (548)
++++..+
T Consensus 566 ~~~eL~~ 572 (588)
T PRK11174 566 DYAELSQ 572 (588)
T ss_pred CHHHHHh
Confidence 8776643
No 286
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-36 Score=327.07 Aligned_cols=219 Identities=17% Similarity=0.185 Sum_probs=158.9
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
.++++|+++. .+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|.|.+.++++........ .
T Consensus 257 ~l~~~~~~~~----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~--~~p~~G~i~~~g~~~~~~~~~~~---~- 326 (501)
T PRK11288 257 RLRLDGLKGP----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGA--TRRTAGQVYLDGKPIDIRSPRDA---I- 326 (501)
T ss_pred EEEEeccccC----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCC--CcCCCceEEECCEECCCCCHHHH---H-
Confidence 5889999842 589999999999999999999999999999999985 36788999998876532211100 0
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHH-hcC----CCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELK-AIG----ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~----~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqR 300 (548)
.....++++...........++.+++........ ..+ .......+.++|+.+||.....++++.+||||||||
T Consensus 327 --~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr 404 (501)
T PRK11288 327 --RAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQK 404 (501)
T ss_pred --hCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHH
Confidence 0011122221100011222344444321100000 000 011234678899999995345789999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG---WKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~---~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|+|||||+.+|+||||||||+|||+.++..|.++|.+ .+.|||+||||++++..+||++++|++|+++.. |..++|
T Consensus 405 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~-~~~~~~ 483 (501)
T PRK11288 405 AILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGE-LAREQA 483 (501)
T ss_pred HHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEE-EccccC
Confidence 9999999999999999999999999999999988754 468999999999999999999999999999864 444444
No 287
>KOG0057|consensus
Probab=100.00 E-value=3.4e-35 Score=311.60 Aligned_cols=211 Identities=23% Similarity=0.317 Sum_probs=165.7
Q ss_pred cEEEEeEEEEeCCce-eeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAKGND-LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~~~-iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.|+++||+++|+.+. +|+++||+|++|+++||||+|||||||+||+|.+. ...+|+|.++|+++.......++..+
T Consensus 351 ~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF---~d~sG~I~IdG~dik~~~~~SlR~~I 427 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRF---FDYSGSILIDGQDIKEVSLESLRQSI 427 (591)
T ss_pred cEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHH---hccCCcEEECCeeHhhhChHHhhhhe
Confidence 499999999998776 99999999999999999999999999999999974 23889999999998766655555544
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh----------hhhcccCCCC
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA----------MQDRATKNFS 294 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~~~~~~~~LS 294 (548)
+..++... .|+.+...++. .-..+...+.+.+++++.|+.+. ....+...||
T Consensus 428 g~VPQd~~-----------LFndTIl~NI~-------YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LS 489 (591)
T KOG0057|consen 428 GVVPQDSV-----------LFNDTILYNIK-------YGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLS 489 (591)
T ss_pred eEeCCccc-----------ccchhHHHHhh-------cCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccc
Confidence 43333221 23333333321 11223334556666666665432 2234456799
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
|||||||+||||++.+|+|+|||||||+||.++...+.+.+... ++|+|+|-||++.+.. ||+|++|++|++..+ |
T Consensus 490 GGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~-~DkI~~l~nG~v~e~-g 567 (591)
T KOG0057|consen 490 GGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKD-FDKIIVLDNGTVKEY-G 567 (591)
T ss_pred cchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhc-CCEEEEEECCeeEEe-c
Confidence 99999999999999999999999999999999999999998873 5899999999999976 999999999999987 7
Q ss_pred CHHHHHH
Q psy11936 373 NYSMFKK 379 (548)
Q Consensus 373 ~y~~f~~ 379 (548)
+.+++..
T Consensus 568 th~ell~ 574 (591)
T KOG0057|consen 568 THSELLA 574 (591)
T ss_pred cHHHHhh
Confidence 8777765
No 288
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=4e-35 Score=276.88 Aligned_cols=163 Identities=28% Similarity=0.361 Sum_probs=129.0
Q ss_pred EEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 147 IKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 147 I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
|+++|++++|+ ++.+|+++||+|.+|++++|+|+||||||||+++|+|. ..|.+|+|.+.+....
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~~~~~i------------ 66 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGL--WPWGSGRIGMPEGEDL------------ 66 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCCceE------------
Confidence 46899999995 46899999999999999999999999999999999985 3577888877542100
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
.++.+.. ..+..++.+++. +. .+.+|||||+||++|||
T Consensus 67 ------~~~~q~~----~~~~~tv~~nl~--------------------------~~------~~~~LS~G~~~rv~lar 104 (166)
T cd03223 67 ------LFLPQRP----YLPLGTLREQLI--------------------------YP------WDDVLSGGEQQRLAFAR 104 (166)
T ss_pred ------EEECCCC----ccccccHHHHhh--------------------------cc------CCCCCCHHHHHHHHHHH
Confidence 0000000 001112222110 00 36789999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCE
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQK 366 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~ 366 (548)
||+.+|++|||||||++||+.++.++.++|.+++.|+|+||||.+++ .+||+|++|+++.
T Consensus 105 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~-~~~d~i~~l~~~~ 164 (166)
T cd03223 105 LLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLW-KFHDRVLDLDGEG 164 (166)
T ss_pred HHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhHH-hhCCEEEEEcCCC
Confidence 99999999999999999999999999999999889999999999876 5899999998764
No 289
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=4.8e-35 Score=327.61 Aligned_cols=210 Identities=20% Similarity=0.254 Sum_probs=162.9
Q ss_pred cEEEEeEEEEeCC-ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAKG-NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~-~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.|+++|++|+|++ .++|+|+||+|++|+++||+|+||||||||+++|+|. ..|.+|.|.+++.++...+...+...+
T Consensus 340 ~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl--~~p~~G~I~idg~~i~~~~~~~l~~~i 417 (592)
T PRK10790 340 RIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGY--YPLTEGEIRLDGRPLSSLSHSVLRQGV 417 (592)
T ss_pred eEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc--cCCCCceEEECCEEhhhCCHHHHHhhe
Confidence 5999999999964 5799999999999999999999999999999999984 578899999999887654443333222
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhh----------hhcccCCCC
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAM----------QDRATKNFS 294 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~----------~~~~~~~LS 294 (548)
. +++|. ...++.+..+|+.. +....++++.++++.+|+.+.. .......||
T Consensus 418 ~-------~v~Q~----~~lF~~Ti~~NI~~--------~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LS 478 (592)
T PRK10790 418 A-------MVQQD----PVVLADTFLANVTL--------GRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLS 478 (592)
T ss_pred E-------EEccC----CccccchHHHHHHh--------CCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCC
Confidence 2 22221 12244455554421 1122355667777777765321 122345799
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
||||||++|||||+.+|+||||||||++||+.+...+.+.|.++ ++|+|+|||+.+.+. .||+|++|++|+++.. |
T Consensus 479 GGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~-~~D~ii~l~~G~i~~~-G 556 (592)
T PRK10790 479 VGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIV-EADTILVLHRGQAVEQ-G 556 (592)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEEEE-c
Confidence 99999999999999999999999999999999999999999875 589999999999886 4999999999999974 7
Q ss_pred CHHHHH
Q psy11936 373 NYSMFK 378 (548)
Q Consensus 373 ~y~~f~ 378 (548)
++++..
T Consensus 557 ~~~~L~ 562 (592)
T PRK10790 557 THQQLL 562 (592)
T ss_pred CHHHHH
Confidence 877653
No 290
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.5e-35 Score=326.13 Aligned_cols=212 Identities=20% Similarity=0.259 Sum_probs=156.1
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++|+++ .+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|.|.+.+.++........ ..
T Consensus 268 ~l~~~~l~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl--~~p~~G~i~~~g~~i~~~~~~~~---~~ 337 (510)
T PRK15439 268 VLTVEDLTG-----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGL--RPARGGRIMLNGKEINALSTAQR---LA 337 (510)
T ss_pred eEEEeCCCC-----CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCC--CCCCCcEEEECCEECCCCCHHHH---Hh
Confidence 699999984 269999999999999999999999999999999985 46788999998876643221110 00
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHH-HHHHHh-cCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEI-YEELKA-IGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~-~~~l~~-~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
....++++...........++.+++... ...+.. ........++.++|+.+||.....++++.+|||||||||+|
T Consensus 338 ---~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~l 414 (510)
T PRK15439 338 ---RGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLI 414 (510)
T ss_pred ---CCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHH
Confidence 0111222111000111223344433211 000000 01111234678899999996335689999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
||||+.+|+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++..
T Consensus 415 a~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~ 484 (510)
T PRK15439 415 AKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGA 484 (510)
T ss_pred HHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999998764 67999999999999999999999999999864
No 291
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.6e-35 Score=325.21 Aligned_cols=213 Identities=18% Similarity=0.252 Sum_probs=157.9
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
..|+++||++ .+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++.+....... ..
T Consensus 256 ~~l~~~~l~~-----~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~--~~p~~G~I~~~g~~i~~~~~~~---~~ 325 (501)
T PRK10762 256 VRLKVDNLSG-----PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGA--LPRTSGYVTLDGHEVVTRSPQD---GL 325 (501)
T ss_pred cEEEEeCccc-----CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCC--CCCCceEEEECCEECCCCCHHH---HH
Confidence 3689999985 379999999999999999999999999999999985 4678899999887764322110 00
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHH-HHHh----cCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYE-ELKA----IGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRM 299 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~-~l~~----~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkq 299 (548)
....+++++...........++.+++..... .+.. ........++.++|+.+|+.....++++.+|||||||
T Consensus 326 ---~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekq 402 (501)
T PRK10762 326 ---ANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQ 402 (501)
T ss_pred ---HCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHH
Confidence 0011222221100011223344444422110 0100 0011224568899999999533568999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 300 RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 300 RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
||+|||||+.+|+||||||||++||+.++..+.++|..+ +.|||+||||++++..+||+|++|++|+++..
T Consensus 403 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 476 (501)
T PRK10762 403 KVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGE 476 (501)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999998775 46999999999999999999999999999754
No 292
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.2e-35 Score=285.14 Aligned_cols=213 Identities=26% Similarity=0.342 Sum_probs=162.4
Q ss_pred cccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCch-hHHHH
Q psy11936 144 AVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDL-TAVES 222 (548)
Q Consensus 144 ~~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~-~~~~~ 222 (548)
...|+++||++.|+++.+|+|+||+|++||.++|+|||||||||||++|+|. ..|.+|.+..++..+-..+. ..++.
T Consensus 29 ~~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~--~~pssg~~~~~G~~~G~~~~~~elrk 106 (257)
T COG1119 29 EPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGE--HPPSSGDVTLLGRRFGKGETIFELRK 106 (257)
T ss_pred cceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcc--cCCCCCceeeeeeeccCCcchHHHHH
Confidence 3579999999999999999999999999999999999999999999999985 45668888888876643333 33333
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCC------ChHHHHHHHHHhCCCChhhhhcccCCCCHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD------SAEPRARRILAGLGFSRAMQDRATKNFSGG 296 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~------~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 296 (548)
.++.... .+..... ....+.+.+. ...+..++.+ ....++..+|+.+|+.. ..+++..+||-|
T Consensus 107 ~IG~vS~--~L~~~~~------~~~~v~dvVl--Sg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~-la~r~~~~LS~G 175 (257)
T COG1119 107 RIGLVSS--ELHERFR------VRETVRDVVL--SGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH-LADRPFGSLSQG 175 (257)
T ss_pred HhCccCH--HHHhhcc------cccccceeee--ecccccccccccCCCHHHHHHHHHHHHHcchhh-hccCchhhcCHh
Confidence 2221110 0000000 0011111100 0011122222 23456788999999985 789999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC-----CeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK-----KTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~-----~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
|||||.|||||+.+|.+|||||||++||...++.|.+.|.++. .++|+|||..+.+-...++++.|.+|+++.
T Consensus 176 e~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~ 253 (257)
T COG1119 176 EQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVA 253 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceee
Confidence 9999999999999999999999999999999999999988763 479999999999999999999999999975
No 293
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=8.8e-35 Score=331.11 Aligned_cols=211 Identities=26% Similarity=0.378 Sum_probs=160.5
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+|+|++ +++|+|+||+|++|+++||+|+||||||||+++|+|. ..|.+|.|.+++.++...+...++..
T Consensus 463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl--~~p~~G~I~idg~~l~~~~~~~lr~~ 540 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL--YQPTEGSVLLDGVDIRQIDPADLRRN 540 (694)
T ss_pred eEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEEhhhCCHHHHHhc
Confidence 5999999999964 5699999999999999999999999999999999974 57889999999988765444333332
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhh----------hhcccCCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAM----------QDRATKNF 293 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~----------~~~~~~~L 293 (548)
+....+... .+..+..+++. .......++++.++++..|+.+.. .......|
T Consensus 541 i~~v~Q~~~-----------lf~~TI~eNi~-------~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~L 602 (694)
T TIGR03375 541 IGYVPQDPR-----------LFYGTLRDNIA-------LGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSL 602 (694)
T ss_pred cEEECCChh-----------hhhhhHHHHHh-------CCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCC
Confidence 222221111 12333333331 111122345556666666554221 22334679
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
|||||||++|||||+.+|++|||||||++||+.+...+.+.|.+. ++|+|+|||+++.+. .||+|++|++|++++.
T Consensus 603 SgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~-~~D~iivl~~G~i~e~- 680 (694)
T TIGR03375 603 SGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLD-LVDRIIVMDNGRIVAD- 680 (694)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEEeCCEEEee-
Confidence 999999999999999999999999999999999999999999876 579999999999885 6999999999999975
Q ss_pred CCHHHHH
Q psy11936 372 GNYSMFK 378 (548)
Q Consensus 372 g~y~~f~ 378 (548)
|++++..
T Consensus 681 G~~~eLl 687 (694)
T TIGR03375 681 GPKDQVL 687 (694)
T ss_pred CCHHHHH
Confidence 7777653
No 294
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=6.3e-35 Score=325.89 Aligned_cols=212 Identities=21% Similarity=0.284 Sum_probs=161.1
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+|+|++ +++|+|+||+|++|+++||+|+||||||||+++|+|. ..|.+|+|.++++++...+...+...
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl--~~p~~G~I~i~g~~i~~~~~~~~~~~ 418 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRF--YDIDEGEILLDGHDLRDYTLASLRNQ 418 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhc--cCCCCceEEECCEEhhhcCHHHHHhh
Confidence 4999999999964 5799999999999999999999999999999999984 57889999999988754443333222
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhh----------hhcccCCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAM----------QDRATKNF 293 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~----------~~~~~~~L 293 (548)
+ .++++. ...++.+..+++.. .......++++.++++.+|+.+.. ......+|
T Consensus 419 i-------~~v~Q~----~~lf~~Ti~~Ni~~------~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~L 481 (582)
T PRK11176 419 V-------ALVSQN----VHLFNDTIANNIAY------ARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLL 481 (582)
T ss_pred c-------eEEccC----ceeecchHHHHHhc------CCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcC
Confidence 2 222221 12234444444321 001112455666677776654221 12223569
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
|||||||++|||||+.+|+||||||||++||+.+...+.+.|.+. ++|+|+|||+.+.+. .||+|++|++|++++.
T Consensus 482 SGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~-~~D~Ii~l~~g~i~e~- 559 (582)
T PRK11176 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-KADEILVVEDGEIVER- 559 (582)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEEEe-
Confidence 999999999999999999999999999999999999999999875 479999999999875 5999999999999875
Q ss_pred CCHHHHH
Q psy11936 372 GNYSMFK 378 (548)
Q Consensus 372 g~y~~f~ 378 (548)
|++++..
T Consensus 560 g~~~~l~ 566 (582)
T PRK11176 560 GTHAELL 566 (582)
T ss_pred CCHHHHH
Confidence 7776653
No 295
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=9.6e-35 Score=324.08 Aligned_cols=211 Identities=24% Similarity=0.378 Sum_probs=163.8
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+|+|++ +++|+|+||+|++|+++||+||||||||||+++|+|. ..|.+|+|.+++.++...+...++..
T Consensus 338 ~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~--~~p~~G~I~i~g~~i~~~~~~~~r~~ 415 (574)
T PRK11160 338 SLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRA--WDPQQGEILLNGQPIADYSEAALRQA 415 (574)
T ss_pred eEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEEhhhCCHHHHHhh
Confidence 5999999999964 4699999999999999999999999999999999984 57889999999988755444333322
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhh---------hcccCCCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQ---------DRATKNFS 294 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~---------~~~~~~LS 294 (548)
+.. +.+.. ..+..+..+++. .......++.+.++++.+|+.+... ......||
T Consensus 416 i~~-------v~Q~~----~lf~~ti~~Ni~-------~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LS 477 (574)
T PRK11160 416 ISV-------VSQRV----HLFSATLRDNLL-------LAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLS 477 (574)
T ss_pred eeE-------Ecccc----hhhcccHHHHhh-------cCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCC
Confidence 221 22111 123334444331 1112234567788888888864321 12456799
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
||||||++|||||+.+|++|||||||++||+.+...+.+.|.++ ++|+|+|||+++.+.. ||+|++|++|+++.. |
T Consensus 478 gGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~-~d~i~~l~~G~i~~~-g 555 (574)
T PRK11160 478 GGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQ-FDRICVMDNGQIIEQ-G 555 (574)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHh-CCEEEEEeCCeEEEe-C
Confidence 99999999999999999999999999999999999999999876 5799999999999865 999999999999975 7
Q ss_pred CHHHHH
Q psy11936 373 NYSMFK 378 (548)
Q Consensus 373 ~y~~f~ 378 (548)
++++..
T Consensus 556 ~~~~l~ 561 (574)
T PRK11160 556 THQELL 561 (574)
T ss_pred CHHHHH
Confidence 776653
No 296
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=6.8e-35 Score=326.13 Aligned_cols=211 Identities=20% Similarity=0.321 Sum_probs=158.9
Q ss_pred cEEEEeEEEEeCC-ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAKG-NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~-~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.|+++||+|+|++ ..+|+|+||+|++|+++||+|+||||||||+++|+|. ..|.+|.|.+++.++...+...+...+
T Consensus 334 ~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl--~~p~~G~I~i~g~~i~~~~~~~~r~~i 411 (588)
T PRK13657 334 AVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRV--FDPQSGRILIDGTDIRTVTRASLRRNI 411 (588)
T ss_pred eEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcC--cCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 5999999999975 5799999999999999999999999999999999984 578899999999887654433333222
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh----------hhhcccCCCC
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA----------MQDRATKNFS 294 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~~~~~~~~LS 294 (548)
.. +++. ...+..+..+++. .......++++..+++.+|+.+. ........||
T Consensus 412 ~~-------v~Q~----~~lf~~Ti~~Ni~-------~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LS 473 (588)
T PRK13657 412 AV-------VFQD----AGLFNRSIEDNIR-------VGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLS 473 (588)
T ss_pred EE-------EecC----cccccccHHHHHh-------cCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCC
Confidence 22 1111 1123344444431 11112234445555555554321 1223345799
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
||||||++|||||+.+|+||||||||++||+.+...+.+.|... ++|+|+|||+...+. .||+|++|++|+++.. |
T Consensus 474 gGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~-~~D~ii~l~~G~i~~~-g 551 (588)
T PRK13657 474 GGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVR-NADRILVFDNGRVVES-G 551 (588)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHH-hCCEEEEEECCEEEEe-C
Confidence 99999999999999999999999999999999999999988775 489999999999875 5999999999999864 7
Q ss_pred CHHHHH
Q psy11936 373 NYSMFK 378 (548)
Q Consensus 373 ~y~~f~ 378 (548)
++++..
T Consensus 552 ~~~~l~ 557 (588)
T PRK13657 552 SFDELV 557 (588)
T ss_pred CHHHHH
Confidence 766553
No 297
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=3e-35 Score=301.76 Aligned_cols=226 Identities=24% Similarity=0.381 Sum_probs=171.5
Q ss_pred cccEEEEeEEEEeCC-----------ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee
Q psy11936 144 AVDIKVENFSISAKG-----------NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV 212 (548)
Q Consensus 144 ~~~I~l~nls~~y~~-----------~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i 212 (548)
...|++++|.+.|.- ..++++|||++.+|+.+||||.||||||||-.+|.++ .+..|.|.|.|+++
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL---~~s~G~I~F~G~~i 350 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL---IPSQGEIRFDGQDI 350 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhh---cCcCceEEECCccc
Confidence 467999999998832 2478999999999999999999999999999999974 56679999999998
Q ss_pred ccCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHh----cCCCChHHHHHHHHHhCCCChhhhhc
Q psy11936 213 VADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA----IGADSAEPRARRILAGLGFSRAMQDR 288 (548)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~----~~~~~~~~~~~~~L~~lgl~~~~~~~ 288 (548)
...+...+.-. ..+..++++.. +....+.+++.+.+. +.+.. ....+...++.++|..+|++....++
T Consensus 351 ~~~~~~~mrpl----R~~mQvVFQDP-ygSLsPRmtV~qII~---EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~R 422 (534)
T COG4172 351 DGLSRKEMRPL----RRRMQVVFQDP-YGSLSPRMTVGQIIE---EGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNR 422 (534)
T ss_pred cccChhhhhhh----hhhceEEEeCC-CCCCCcccCHHHHhh---hhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhc
Confidence 75443222110 00111111110 001111223333222 22222 22344567899999999999989999
Q ss_pred ccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeC
Q psy11936 289 ATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQ 364 (548)
Q Consensus 289 ~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~ 364 (548)
+|+++|||||||++|||||+.+|.+++||||||+||..-+..+.++|+++ +.+.||||||+..+..+|++|+||.+
T Consensus 423 YPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~ 502 (534)
T COG4172 423 YPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRD 502 (534)
T ss_pred CCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeC
Confidence 99999999999999999999999999999999999999888888888764 57999999999999999999999999
Q ss_pred CEEEEEcCCHHHHHHH
Q psy11936 365 QKLYYYKGNYSMFKKM 380 (548)
Q Consensus 365 G~i~~~~g~y~~f~~~ 380 (548)
|+|++.+..-+.|.+.
T Consensus 503 GkiVE~G~~~~if~~P 518 (534)
T COG4172 503 GKIVEQGPTEAVFANP 518 (534)
T ss_pred CEEeeeCCHHHHhcCC
Confidence 9999976555555443
No 298
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-35 Score=315.30 Aligned_cols=211 Identities=27% Similarity=0.349 Sum_probs=161.6
Q ss_pred ccEEEEeEEEEeCCc-eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 145 VDIKVENFSISAKGN-DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 145 ~~I~l~nls~~y~~~-~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
..++++||++.|++. ++++|+||++++|+.++|||+||||||||+++|+|. ..|..|+|.+++++....+...++..
T Consensus 319 ~ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~--~~~~~G~I~vng~~l~~l~~~~~~k~ 396 (559)
T COG4988 319 IEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGF--LAPTQGEIRVNGIDLRDLSPEAWRKQ 396 (559)
T ss_pred ceeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCc--CCCCCceEEECCccccccCHHHHHhH
Confidence 456677999999654 899999999999999999999999999999999985 46789999999988765444433322
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhh---------hhcccCCCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAM---------QDRATKNFS 294 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~---------~~~~~~~LS 294 (548)
+ .++.+. ...+..+..+|+. ....+..++.+.++++..|+.+.. .......||
T Consensus 397 i-------~~v~Q~----p~lf~gTireNi~-------l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LS 458 (559)
T COG4988 397 I-------SWVSQN----PYLFAGTIRENIL-------LARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLS 458 (559)
T ss_pred e-------eeeCCC----CccccccHHHHhh-------ccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCC
Confidence 1 122211 1123344444432 222334566777777777665321 122334599
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
|||+|||+|||||+.+++|+||||||+|||.++...+.+.|.+. +.|||+|||+++.+.. ||+|++|++|+++.. |
T Consensus 459 gGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~-~D~I~vld~G~l~~~-g 536 (559)
T COG4988 459 GGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAAD-ADRIVVLDNGRLVEQ-G 536 (559)
T ss_pred HHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhc-CCEEEEecCCceecc-C
Confidence 99999999999999999999999999999999999999988775 4799999999999976 999999999999974 6
Q ss_pred CHHHH
Q psy11936 373 NYSMF 377 (548)
Q Consensus 373 ~y~~f 377 (548)
++++.
T Consensus 537 ~~~~L 541 (559)
T COG4988 537 THEEL 541 (559)
T ss_pred CHHHH
Confidence 66654
No 299
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.6e-35 Score=285.68 Aligned_cols=189 Identities=20% Similarity=0.215 Sum_probs=139.4
Q ss_pred cEEEEeEEEEeC----CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC-CCCeEEEEeceeeccCchhHH
Q psy11936 146 DIKVENFSISAK----GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV-PPNIDILYCEQEVVADDLTAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~----~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~-~~~g~I~~~~q~i~~~~~~~~ 220 (548)
.++++||+|.|+ ++.+|+++||+|.+|+++||+|+|||||||||++|+|...+. |.+|.|.+.+.++..... ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~-~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAE-KY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchh-hh
Confidence 478999999995 457999999999999999999999999999999999853211 778999998876532110 00
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqR 300 (548)
. ....+..+. ....+..++.+++.... .+. .++++..|||||+||
T Consensus 82 ~-------~~i~~~~q~---~~~~~~~tv~~~l~~~~--------------------~~~-----~~~~~~~LS~Ge~qr 126 (202)
T cd03233 82 P-------GEIIYVSEE---DVHFPTLTVRETLDFAL--------------------RCK-----GNEFVRGISGGERKR 126 (202)
T ss_pred c-------ceEEEEecc---cccCCCCcHHHHHhhhh--------------------hhc-----cccchhhCCHHHHHH
Confidence 0 001111111 01112234433332100 000 356788999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEE-ecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIV-SHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiV-SHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
++|||||+.+|+||||||||++||+.++..+.++|.++ +.|+|++ +|+.+.+..+||++++|++|+++..
T Consensus 127 l~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~ 201 (202)
T cd03233 127 VSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYY 201 (202)
T ss_pred HHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEec
Confidence 99999999999999999999999999999999988764 3465555 5667888899999999999999753
No 300
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.2e-34 Score=330.66 Aligned_cols=212 Identities=24% Similarity=0.279 Sum_probs=160.5
Q ss_pred cEEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.|+++||+|+|+ ++++|+|+||+|++|+++||+|+||||||||+++|+|. ..|.+|+|.+++.++...+...++..+
T Consensus 473 ~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl--~~p~~G~I~idg~~i~~~~~~~lr~~i 550 (708)
T TIGR01193 473 DIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGF--FQARSGEILLNGFSLKDIDRHTLRQFI 550 (708)
T ss_pred cEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhcc--CCCCCcEEEECCEEHHHcCHHHHHHhe
Confidence 599999999996 46799999999999999999999999999999999984 578899999999887554444333322
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh----------hhhcccCCCC
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA----------MQDRATKNFS 294 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~~~~~~~~LS 294 (548)
....+.. ..+..+..+++.. .......++++.++++..|+.+. ........||
T Consensus 551 ~~v~Q~~-----------~lf~gTI~eNi~l------~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LS 613 (708)
T TIGR01193 551 NYLPQEP-----------YIFSGSILENLLL------GAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSIS 613 (708)
T ss_pred EEEecCc-----------eehhHHHHHHHhc------cCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCC
Confidence 2221111 1233344444321 00112234455556665555321 1233456799
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc-CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCC
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW-KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~-~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~ 373 (548)
||||||++|||||+.+|++|||||||++||..+...+.+.|..+ ++|+|+|||+++.+. .||+|++|++|+++. .|+
T Consensus 614 gGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~-~~D~i~~l~~G~i~~-~G~ 691 (708)
T TIGR01193 614 GGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAK-QSDKIIVLDHGKIIE-QGS 691 (708)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHH-cCCEEEEEECCEEEE-ECC
Confidence 99999999999999999999999999999999999999998876 579999999999885 599999999999986 488
Q ss_pred HHHHH
Q psy11936 374 YSMFK 378 (548)
Q Consensus 374 y~~f~ 378 (548)
+++..
T Consensus 692 ~~~L~ 696 (708)
T TIGR01193 692 HDELL 696 (708)
T ss_pred HHHHH
Confidence 77653
No 301
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.5e-35 Score=287.52 Aligned_cols=208 Identities=23% Similarity=0.373 Sum_probs=159.8
Q ss_pred eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHH
Q psy11936 160 DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAK 239 (548)
Q Consensus 160 ~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (548)
.+++|+||+|++|+++|++|+|||||||+||+|+|. ..|.+|.|...|..........+ +..++.. .+
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGl--l~p~~G~v~V~G~~Pf~~~~~~~--------~~~~~v~--gq 105 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGL--LLPTSGKVRVNGKDPFRRREEYL--------RSIGLVM--GQ 105 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCc--cccCCCeEEecCcCcchhHHHHH--------HHHHHHh--hh
Confidence 478999999999999999999999999999999984 57889999887765433211111 1111111 00
Q ss_pred HhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCC
Q psy11936 240 LEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEP 319 (548)
Q Consensus 240 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEP 319 (548)
......+....+.+ .+...+..++.....++...+-+.+++.. .++.++..||-|||+|+.||.+|+++|+||+||||
T Consensus 106 k~ql~Wdlp~~ds~-~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~-~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEp 183 (325)
T COG4586 106 KLQLWWDLPALDSL-EVLKLIYEIPDDEFAERLDFLTEILDLEG-FLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEP 183 (325)
T ss_pred hheeeeechhhhhH-HHHHHHHhCCHHHHHHHHHHHHHHhcchh-hhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCC
Confidence 11111111122211 22333445555666778888888999975 56889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHHHHH
Q psy11936 320 TNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYA 382 (548)
Q Consensus 320 Tn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~~~~ 382 (548)
|-+||..++..+.++|+.+ +.||+++||+++-+..+|+||++|+.|+++ |.|+.+.+.+.+.
T Consensus 184 TvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv-~dg~l~~l~~~f~ 249 (325)
T COG4586 184 TVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLV-FDGTLAQLQEQFG 249 (325)
T ss_pred ccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEe-ecccHHHHHHHhC
Confidence 9999999999999999876 479999999999999999999999999998 5788888766553
No 302
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.3e-34 Score=277.96 Aligned_cols=182 Identities=25% Similarity=0.364 Sum_probs=131.7
Q ss_pred EEEEeEEEEeCCc-----eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeecc--CchhH
Q psy11936 147 IKVENFSISAKGN-----DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVA--DDLTA 219 (548)
Q Consensus 147 I~l~nls~~y~~~-----~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~--~~~~~ 219 (548)
|+++||+++|++. .+|+++||+|++|++++|+|||||||||||++|+|. ..|.+|+|.+.+. +.. .+..
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~--~~~~~G~i~~~g~-i~~~~q~~~- 76 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGE--LEKLSGSVSVPGS-IAYVSQEPW- 76 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCc--CCCCCCeEEEcCE-EEEEecCch-
Confidence 4689999999764 699999999999999999999999999999999985 4677888877651 111 1100
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhC-----------CCChhhhhc
Q psy11936 220 VESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGL-----------GFSRAMQDR 288 (548)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~l-----------gl~~~~~~~ 288 (548)
+ +..++.+++.. ..........+++..+ |+. ...+.
T Consensus 77 -------------l-----------~~~t~~enl~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~ 123 (204)
T cd03250 77 -------------I-----------QNGTIRENILF--------GKPFDEERYEKVIKACALEPDLEILPDGDL-TEIGE 123 (204)
T ss_pred -------------h-----------ccCcHHHHhcc--------CCCcCHHHHHHHHHHcCcHHHHHhccCccc-ceecC
Confidence 0 00011111100 0000001111122222 222 12456
Q ss_pred ccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH-HHhhc---CCeEEEEecCHHHHHhhcCEEEEEeC
Q psy11936 289 ATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDN-YLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQ 364 (548)
Q Consensus 289 ~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~-~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~ 364 (548)
++.+|||||+||++|||||+.+|++|||||||++||+.+..++.+ ++..+ +.|||+|||+.+++.. ||++++|++
T Consensus 124 ~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i~~l~~ 202 (204)
T cd03250 124 KGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDN 202 (204)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEEEEEeC
Confidence 688999999999999999999999999999999999999998887 45433 4799999999999987 999999998
Q ss_pred CE
Q psy11936 365 QK 366 (548)
Q Consensus 365 G~ 366 (548)
|+
T Consensus 203 G~ 204 (204)
T cd03250 203 GR 204 (204)
T ss_pred CC
Confidence 84
No 303
>KOG0927|consensus
Probab=100.00 E-value=1.2e-34 Score=306.41 Aligned_cols=211 Identities=28% Similarity=0.383 Sum_probs=169.3
Q ss_pred cccEEEEeEEEEeCCc-eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 144 AVDIKVENFSISAKGN-DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 144 ~~~I~l~nls~~y~~~-~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
+..|.+.||+|.|.+. .++++++|-|..+++++||||||||||||||+|+|.. .|..|.+.-.......
T Consensus 387 ~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl--~p~~G~vs~~~H~~~~-------- 456 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDL--QPTIGMVSRHSHNKLP-------- 456 (614)
T ss_pred CCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcc--ccccccccccccccch--------
Confidence 4579999999999766 6899999999999999999999999999999999853 5666655432221110
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
.+.+.. ......+.+..+++.. ........+.++.+|.++||+.+....++.+||+|||.||+
T Consensus 457 ----------~y~Qh~-~e~ldl~~s~le~~~~------~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVl 519 (614)
T KOG0927|consen 457 ----------RYNQHL-AEQLDLDKSSLEFMMP------KFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVL 519 (614)
T ss_pred ----------hhhhhh-HhhcCcchhHHHHHHH------hccccchHHHHHHHHHHhCCCccccccchhhcccccchhHH
Confidence 000100 0111122222222221 11223456678899999999988889999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMY 381 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~~~ 381 (548)
+|++++..|.||||||||||||+.++..+.++|.+|.++||+||||+.++.+++++||+..+|.+..|.|.|..|....
T Consensus 520 Fa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk~~l 598 (614)
T KOG0927|consen 520 FARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYKEHL 598 (614)
T ss_pred HHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997544
No 304
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=2.5e-34 Score=320.16 Aligned_cols=210 Identities=23% Similarity=0.336 Sum_probs=160.9
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+|+|++ +++|+|+||+|++|++++|+|+||||||||+++|+|. ..|.+|.|.+++.++...+...+...
T Consensus 330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl--~~~~~G~I~i~g~~i~~~~~~~~~~~ 407 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRF--YEPDSGQILLDGHDLADYTLASLRRQ 407 (571)
T ss_pred eEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhc--cCCCCCeEEECCEeHHhcCHHHHHhh
Confidence 5999999999964 5799999999999999999999999999999999984 57889999999987754433332222
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC-CChHHHHHHHHHhCCCChhhh----------hcccCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA-DSAEPRARRILAGLGFSRAMQ----------DRATKN 292 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~~~L~~lgl~~~~~----------~~~~~~ 292 (548)
+ .++++. ...+..+..+++. .... ...+.++.++++.+|+.+... ......
T Consensus 408 i-------~~v~Q~----~~lf~~Ti~~Ni~-------~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~ 469 (571)
T TIGR02203 408 V-------ALVSQD----VVLFNDTIANNIA-------YGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVL 469 (571)
T ss_pred c-------eEEccC----cccccccHHHHHh-------cCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCc
Confidence 1 222221 1223444444432 1111 234566777777777653211 122356
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
||||||||++|||||+.+|+||||||||++||..+...+.+.|.++ ++|+|+|||+...+. .||+|++|++|+++..
T Consensus 470 LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~-~~D~ii~l~~g~i~~~ 548 (571)
T TIGR02203 470 LSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIE-KADRIVVMDDGRIVER 548 (571)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHH-hCCEEEEEeCCEEEee
Confidence 9999999999999999999999999999999999999999999886 479999999998874 6999999999999875
Q ss_pred cCCHHHH
Q psy11936 371 KGNYSMF 377 (548)
Q Consensus 371 ~g~y~~f 377 (548)
|++++.
T Consensus 549 -g~~~~l 554 (571)
T TIGR02203 549 -GTHNEL 554 (571)
T ss_pred -CCHHHH
Confidence 666654
No 305
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=8.5e-35 Score=279.84 Aligned_cols=185 Identities=26% Similarity=0.346 Sum_probs=133.7
Q ss_pred eCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHH
Q psy11936 156 AKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLA 235 (548)
Q Consensus 156 y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~ 235 (548)
|+++.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|.|.+.+.++...... .... .....++.
T Consensus 2 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~~~~-~~~~----~~~i~~~~ 74 (190)
T TIGR01166 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGL--LRPQSGAVLIDGEPLDYSRKG-LLER----RQRVGLVF 74 (190)
T ss_pred CCccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceeEEECCEEccccccc-hHHH----HhhEEEEe
Confidence 4567899999999999999999999999999999999985 467899999988776321110 0000 00111122
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEE
Q psy11936 236 ECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLL 315 (548)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLL 315 (548)
+... ...+..++.+++..... ...........++.++++.+|+.. ..++++.+|||||+|||+|||||+.+|+|||
T Consensus 75 q~~~--~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~lll 150 (190)
T TIGR01166 75 QDPD--DQLFAADVDQDVAFGPL-NLGLSEAEVERRVREALTAVGASG-LRERPTHCLSGGEKKRVAIAGAVAMRPDVLL 150 (190)
T ss_pred cChh--hccccccHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCchh-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 1110 01122344444421110 001111122356788999999974 5789999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHH
Q psy11936 316 LDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSF 351 (548)
Q Consensus 316 LDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~ 351 (548)
|||||++||+.++.++.++|.++ +.|||+||||+++
T Consensus 151 lDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 151 LDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 99999999999999999999775 5799999999875
No 306
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=3e-34 Score=319.61 Aligned_cols=211 Identities=27% Similarity=0.420 Sum_probs=159.9
Q ss_pred cEEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.|+++||+|+|+ ++++|+|+||+|++|+++|||||||||||||+++|+| +..|.+|.|.++|+++...+...++..+
T Consensus 328 ~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r--~~~~~~G~I~idg~dI~~i~~~~lr~~I 405 (567)
T COG1132 328 SIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLR--LYDPTSGEILIDGIDIRDISLDSLRKRI 405 (567)
T ss_pred eEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhc--cCCCCCCeEEECCEehhhcCHHHHHHhc
Confidence 499999999998 5799999999999999999999999999999999997 4577899999999888765555444333
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHH---------HhC--CCChhhhhcccCCC
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRIL---------AGL--GFSRAMQDRATKNF 293 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L---------~~l--gl~~~~~~~~~~~L 293 (548)
.. ++|. ...|..+..+|+.. -..+..++.+.+++ ..+ |++. ........|
T Consensus 406 ~~-------V~Qd----~~LF~~TI~~NI~~-------g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt-~vge~G~~L 466 (567)
T COG1132 406 GI-------VSQD----PLLFSGTIRENIAL-------GRPDATDEEIEEALKLANAHEFIANLPDGYDT-IVGERGVNL 466 (567)
T ss_pred cE-------Eccc----ceeecccHHHHHhc-------CCCCCCHHHHHHHHHHhChHHHHHhCcccccc-eecCCCccC
Confidence 22 2211 12233444444321 11111223333333 333 4442 223445689
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
|||||||++|||||+.+|+|||||||||+||..+...+.+.+.+. ++|+|+|+|++..+.. ||+|++|++|+++++
T Consensus 467 SgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~-aD~IiVl~~G~i~e~- 544 (567)
T COG1132 467 SGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN-ADRIIVLDNGRIVER- 544 (567)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHh-CCEEEEEECCEEEEe-
Confidence 999999999999999999999999999999999999999888643 3599999999999987 999999999998875
Q ss_pred CCHHHHHH
Q psy11936 372 GNYSMFKK 379 (548)
Q Consensus 372 g~y~~f~~ 379 (548)
|+++++..
T Consensus 545 G~h~eLl~ 552 (567)
T COG1132 545 GTHEELLA 552 (567)
T ss_pred cCHHHHHH
Confidence 88877654
No 307
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.7e-34 Score=283.62 Aligned_cols=201 Identities=23% Similarity=0.284 Sum_probs=140.7
Q ss_pred EEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 148 KVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 148 ~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
.+.|++++|+ +..+|+|+||+|.+|++++|+|+|||||||||++|+|. ..|.+|+|.+.+..+............
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~~~~~~~~~~-- 77 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGE--MQTLEGKVHWSNKNESEPSFEATRSRN-- 77 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc--CCCCCCeEEECCcccccccccccchhh--
Confidence 4789999996 46799999999999999999999999999999999985 357789998887654321100000000
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhh----------hhcccCCCCHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAM----------QDRATKNFSGG 296 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~----------~~~~~~~LSGG 296 (548)
.....++.+.. ..+..++.+++.. .... ....+..+++.+++.... .+.++..||||
T Consensus 78 -~~~i~~~~q~~----~~~~~t~~~nl~~-------~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G 144 (218)
T cd03290 78 -RYSVAYAAQKP----WLLNATVEENITF-------GSPF-NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGG 144 (218)
T ss_pred -cceEEEEcCCC----ccccccHHHHHhh-------cCcC-CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHH
Confidence 00011111110 0112233333211 0011 122344566666654221 24578899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH--HHh---hcCCeEEEEecCHHHHHhhcCEEEEEeCCE
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDN--YLQ---GWKKTLLIVSHDQSFLDNVCNEIIHLDQQK 366 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~--~L~---~~~~TvIiVSHD~~~l~~vadrIi~L~~G~ 366 (548)
|+|||+|||||+.+|++|||||||++||+.++..+.+ ++. +.+.|||+||||.+++. .||++++|++|.
T Consensus 145 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~G~ 218 (218)
T cd03290 145 QRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP-HADWIIAMKDGS 218 (218)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh-hCCEEEEecCCC
Confidence 9999999999999999999999999999999888776 443 44689999999999985 699999998873
No 308
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=6.6e-34 Score=315.66 Aligned_cols=205 Identities=22% Similarity=0.265 Sum_probs=154.8
Q ss_pred cEEEEeEEEEeCC-ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAKG-NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~-~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.|+++||+|+|++ .++|+|+||+|++|++++|+||||||||||+++|+|. ..|.+|.|.++++++...+...+...+
T Consensus 322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~--~~~~~G~i~~~g~~~~~~~~~~~~~~i 399 (547)
T PRK10522 322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGL--YQPQSGEILLDGKPVTAEQPEDYRKLF 399 (547)
T ss_pred eEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCeEEEECCEECCCCCHHHHhhhe
Confidence 5999999999965 5699999999999999999999999999999999984 578899999999887544333322221
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhh--hc--ccCCCCHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQ--DR--ATKNFSGGWRMR 300 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~--~~--~~~~LSGGqkqR 300 (548)
....+...++ ..+..++ +....++.+.++++.+++..... +. ...+||||||||
T Consensus 400 ~~v~q~~~lf-----------~~ti~~n-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qR 457 (547)
T PRK10522 400 SAVFTDFHLF-----------DQLLGPE-----------GKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKR 457 (547)
T ss_pred EEEecChhHH-----------HHhhccc-----------cCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHH
Confidence 1111111111 1111000 11223455677888888864321 11 135899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHH
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG----WKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~----~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~ 375 (548)
++|||||+.+|++|||||||++||+.+...+.+.|.+ .+.|+|+|||+.+.+. .||+|++|++|+++.+.|+..
T Consensus 458 l~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~e~~~~~~ 535 (547)
T PRK10522 458 LALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFI-HADRLLEMRNGQLSELTGEER 535 (547)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHH-hCCEEEEEECCEEEEecCCch
Confidence 9999999999999999999999999999988877753 3689999999998875 699999999999999877643
No 309
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.1e-34 Score=287.53 Aligned_cols=178 Identities=25% Similarity=0.367 Sum_probs=132.8
Q ss_pred eeeEeeeEEEE-----CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHH
Q psy11936 160 DLFVNANLLIA-----NGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELL 234 (548)
Q Consensus 160 ~iL~~vsl~I~-----~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~ 234 (548)
..|.+++|++. +|+++||+|||||||||||++|+|. ..|.+|.|.+.+..+.....
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~--~~p~~G~i~~~g~~i~~~~q----------------- 68 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGV--LKPDEGDIEIELDTVSYKPQ----------------- 68 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCC--CcCCCCeEEECCceEEEecc-----------------
Confidence 35566666665 7999999999999999999999985 46778888776643321100
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEE
Q psy11936 235 AECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLL 314 (548)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lL 314 (548)
.. ...+..++.+++.... .... .....+.++++.+|+. ...++++.+|||||+|||+|||||+.+|++|
T Consensus 69 --~~---~~~~~~tv~e~l~~~~---~~~~--~~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~qrv~iaraL~~~p~ll 137 (246)
T cd03237 69 --YI---KADYEGTVRDLLSSIT---KDFY--THPYFKTEIAKPLQIE-QILDREVPELSGGELQRVAIAACLSKDADIY 137 (246)
T ss_pred --cc---cCCCCCCHHHHHHHHh---hhcc--ccHHHHHHHHHHcCCH-HHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 00 0011223333221110 0011 1123456788999997 4578999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 315 LLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 315 LLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|+++..
T Consensus 138 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~ 194 (246)
T cd03237 138 LLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPS 194 (246)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCe
Confidence 999999999999999999988775 57999999999999999999999976543
No 310
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=3.1e-34 Score=327.26 Aligned_cols=211 Identities=21% Similarity=0.282 Sum_probs=158.6
Q ss_pred cEEEEeEEEEeCC---ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKG---NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~---~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
.|+++||+|+|++ +++|+|+||+|++|++++||||||||||||+++|+|. ..|.+|+|.++++++...+...+..
T Consensus 478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl--~~p~~G~I~idg~~i~~~~~~~lr~ 555 (711)
T TIGR00958 478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNL--YQPTGGQVLLDGVPLVQYDHHYLHR 555 (711)
T ss_pred eEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhc--cCCCCCEEEECCEEHHhcCHHHHHh
Confidence 5999999999964 4699999999999999999999999999999999984 5788999999998875444333322
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh----------hhhcccCC
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA----------MQDRATKN 292 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~~~~~~~~ 292 (548)
.+ .++.|. ...+..+..+|+.. ......++.+.++++..++.+. .......+
T Consensus 556 ~i-------~~v~Q~----~~lF~gTIreNI~~-------g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~ 617 (711)
T TIGR00958 556 QV-------ALVGQE----PVLFSGSVRENIAY-------GLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQ 617 (711)
T ss_pred hc-------eEEecC----ccccccCHHHHHhc-------CCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCc
Confidence 22 222221 12244455554421 1112234556666666665421 12223457
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
||||||||++|||||+++|+||||||||++||..+...+.+.....++|+|+|||+++.+. .||+|++|++|+++.. |
T Consensus 618 LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~-~aD~IivL~~G~ive~-G 695 (711)
T TIGR00958 618 LSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVE-RADQILVLKKGSVVEM-G 695 (711)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHH-hCCEEEEEECCEEEEe-e
Confidence 9999999999999999999999999999999999998888833333689999999999886 4999999999999875 7
Q ss_pred CHHHHH
Q psy11936 373 NYSMFK 378 (548)
Q Consensus 373 ~y~~f~ 378 (548)
++++..
T Consensus 696 t~~eL~ 701 (711)
T TIGR00958 696 THKQLM 701 (711)
T ss_pred CHHHHH
Confidence 776653
No 311
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=4.9e-34 Score=318.12 Aligned_cols=192 Identities=22% Similarity=0.328 Sum_probs=149.5
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.+|+++|+++.|++. .|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+. ..+..
T Consensus 339 ~~l~~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl--~~p~~G~I~~~-~~i~y---------- 404 (590)
T PRK13409 339 TLVEYPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGV--LKPDEGEVDPE-LKISY---------- 404 (590)
T ss_pred eEEEEcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEEe-eeEEE----------
Confidence 469999999999875 59999999999999999999999999999999985 35777877653 11100
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
.++.. ...+..++.+++.... ... .....+.++|+.+|+. ...++++.+|||||||||+||
T Consensus 405 ---------~~Q~~---~~~~~~tv~e~l~~~~---~~~---~~~~~~~~~L~~l~l~-~~~~~~~~~LSGGe~QRvaiA 465 (590)
T PRK13409 405 ---------KPQYI---KPDYDGTVEDLLRSIT---DDL---GSSYYKSEIIKPLQLE-RLLDKNVKDLSGGELQRVAIA 465 (590)
T ss_pred ---------ecccc---cCCCCCcHHHHHHHHh---hhc---ChHHHHHHHHHHCCCH-HHHhCCcccCCHHHHHHHHHH
Confidence 00000 0012233333332110 111 1123567899999997 567999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|||+.+|+||||||||||||+.++..+.++|+++ +.|||+||||++++..+||+|++|++ ++..+
T Consensus 466 raL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~ 534 (590)
T PRK13409 466 ACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKH 534 (590)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceee
Confidence 9999999999999999999999999999999875 67999999999999999999999965 66554
No 312
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.1e-34 Score=277.30 Aligned_cols=189 Identities=20% Similarity=0.222 Sum_probs=143.7
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+++ +||+|++|+++||+|+|||||||||++|+|. ..|.+|.|.+.+.++.... .
T Consensus 1 ~l~~~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~i~~~~----~---- 69 (195)
T PRK13541 1 MLSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGI--MQPSSGNIYYKNCNINNIA----K---- 69 (195)
T ss_pred CeEEEEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCcccChhh----h----
Confidence 378999999998877776 9999999999999999999999999999985 4678899998886552110 0
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
....++.+. ....+..++.+++.... .. .....++..+++.+++. ...++.+.+|||||+||++|||
T Consensus 70 ---~~~~~~~~~---~~~~~~~tv~~~l~~~~-~~-----~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~~rl~la~ 136 (195)
T PRK13541 70 ---PYCTYIGHN---LGLKLEMTVFENLKFWS-EI-----YNSAETLYAAIHYFKLH-DLLDEKCYSLSSGMQKIVAIAR 136 (195)
T ss_pred ---hhEEeccCC---cCCCccCCHHHHHHHHH-Hh-----cccHHHHHHHHHHcCCH-hhhccChhhCCHHHHHHHHHHH
Confidence 001111111 01123344555443211 01 11245677889999997 4568899999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCeEEEEecCHHHHHhhcCEE
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG---WKKTLLIVSHDQSFLDNVCNEI 359 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~---~~~TvIiVSHD~~~l~~vadrI 359 (548)
||+.+|++|||||||++||+.++.++.++|.. .+.|||+||||+.++.. ||.|
T Consensus 137 al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~-~~~~ 192 (195)
T PRK13541 137 LIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKS-AQIL 192 (195)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccch-hhee
Confidence 99999999999999999999999999998863 35899999999998865 6644
No 313
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=1.6e-33 Score=276.48 Aligned_cols=187 Identities=14% Similarity=0.182 Sum_probs=138.2
Q ss_pred eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEE-EeceeeccCchhHHHHHHHhhHHHHHHHHHHH
Q psy11936 160 DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL-YCEQEVVADDLTAVESVLKADVKRTELLAECA 238 (548)
Q Consensus 160 ~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~-~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 238 (548)
++|+||||+|++|+++||+|||||||||||++|+|. ..|.+|+|. +.+..+... .
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl--~~~~sG~i~~~~~~~~~~~----------~------------ 56 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGL--DAPDEGDFIGLRGDALPLG----------A------------ 56 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--ccCCCCCEEEecCceeccc----------c------------
Confidence 479999999999999999999999999999999985 467888885 444322100 0
Q ss_pred HHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q psy11936 239 KLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDE 318 (548)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDE 318 (548)
........+..+++..... . .+. ........++..+++.. ..++++..||||||||++|||||+.+|++|||||
T Consensus 57 -~~~l~~~ltv~enl~~~~~-~--~~~-~~~~~~~~~~~~~~l~~-~~~~~~~~lS~G~~qrv~la~al~~~p~llllDE 130 (213)
T PRK15177 57 -NSFILPGLTGEENARMMAS-L--YGL-DGDEFSHFCYQLTQLEQ-CYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADG 130 (213)
T ss_pred -ccccCCcCcHHHHHHHHHH-H--cCC-CHHHHHHHHHHHhChhH-HhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 0001122344444432111 1 111 11222233445667764 5688999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhh-c-CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 319 PTNHLDLNAVIWLDNYLQG-W-KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 319 PTn~LD~~s~~~L~~~L~~-~-~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
||++||+.+...+.++|.. . +.|+|+||||+.++..+||+|++|++|++++ .++-+..
T Consensus 131 P~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 190 (213)
T PRK15177 131 KLYTGDNATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITM-CEDLAQA 190 (213)
T ss_pred CCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEE-eCCHHHH
Confidence 9999999999888887643 2 4689999999999999999999999999985 4665554
No 314
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=5.2e-34 Score=318.81 Aligned_cols=210 Identities=20% Similarity=0.334 Sum_probs=155.1
Q ss_pred cEEEEeEEEEeCC-ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAKG-NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~-~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.|+++||+|+|++ +++|+|+||+|++|+++||+||||||||||+++|+|. ..|.+|+|.+++.++...+...+...+
T Consensus 334 ~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~--~~~~~G~i~~~g~~~~~~~~~~~~~~i 411 (585)
T TIGR01192 334 AVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRV--YDPTVGQILIDGIDINTVTRESLRKSI 411 (585)
T ss_pred eEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccC--CCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 5999999999975 5799999999999999999999999999999999984 578899999988876433322222111
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhC-----------CCChhhhhcccCCC
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGL-----------GFSRAMQDRATKNF 293 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~l-----------gl~~~~~~~~~~~L 293 (548)
.++.+. ...+..+..+++.. ......++.+..++... |+.. ........|
T Consensus 412 -------~~v~q~----~~lf~~ti~~Ni~~-------~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t-~~~~~~~~L 472 (585)
T TIGR01192 412 -------ATVFQD----AGLFNRSIRENIRL-------GREGATDEEVYEAAKAAAAHDFILKRSNGYDT-LVGERGNRL 472 (585)
T ss_pred -------EEEccC----CccCcccHHHHHhc-------CCCCCCHHHHHHHHHHhCcHHHHHhccccccc-hhcCCCCCC
Confidence 111111 11223333333311 00111122233333322 3332 345567789
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
|||||||++|||||+.+|++|||||||++||+.+...+.+.|.++ +.|||+|||+.+.+. .||+|++|++|+++. .
T Consensus 473 SgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~-~~d~i~~l~~G~i~~-~ 550 (585)
T TIGR01192 473 SGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVR-NADLVLFLDQGRLIE-K 550 (585)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHH-cCCEEEEEECCEEEE-E
Confidence 999999999999999999999999999999999999999998775 579999999999995 599999999999986 4
Q ss_pred CCHHHHH
Q psy11936 372 GNYSMFK 378 (548)
Q Consensus 372 g~y~~f~ 378 (548)
|+++++.
T Consensus 551 g~~~~l~ 557 (585)
T TIGR01192 551 GSFQELI 557 (585)
T ss_pred CCHHHHH
Confidence 7776653
No 315
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=4.3e-34 Score=316.92 Aligned_cols=209 Identities=24% Similarity=0.424 Sum_probs=154.3
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++|++|+|++ +++|+|+||+|++|+++||+||||||||||+++|+|. ..|.+|.|.+++.++...+...+...
T Consensus 316 ~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~--~~~~~G~i~~~g~~i~~~~~~~~~~~ 393 (544)
T TIGR01842 316 HLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGI--WPPTSGSVRLDGADLKQWDRETFGKH 393 (544)
T ss_pred eEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEehhhCCHHHHhhh
Confidence 5999999999954 5799999999999999999999999999999999985 46888999998887643332222211
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHH---------HHHHHhC--CCChhhhhcccCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRA---------RRILAGL--GFSRAMQDRATKN 292 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~---------~~~L~~l--gl~~~~~~~~~~~ 292 (548)
+. +.++. ...+..+..+++. .......++++ .++++.+ |++. .......+
T Consensus 394 i~-------~v~q~----~~lf~~ti~~Ni~-------~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t-~~~~~g~~ 454 (544)
T TIGR01842 394 IG-------YLPQD----VELFPGTVAENIA-------RFGENADPEKIIEAAKLAGVHELILRLPDGYDT-VIGPGGAT 454 (544)
T ss_pred eE-------EecCC----cccccccHHHHHh-------ccCCCCCHHHHHHHHHHhChHHHHHhCcccccc-ccCCCcCC
Confidence 11 11111 1112223333331 01111112222 2344444 4442 34556788
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
||||||||++|||||+.+|++|||||||++||+.+...+.+.|.++ +.|+|+|||+.+.+. .||+|++|++|+++.
T Consensus 455 LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~-~~d~i~~l~~G~i~~ 533 (544)
T TIGR01842 455 LSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLG-CVDKILVLQDGRIAR 533 (544)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999999999998875 479999999999875 699999999999986
Q ss_pred EcCCHHHH
Q psy11936 370 YKGNYSMF 377 (548)
Q Consensus 370 ~~g~y~~f 377 (548)
. |+++++
T Consensus 534 ~-g~~~~l 540 (544)
T TIGR01842 534 F-GERDEV 540 (544)
T ss_pred e-CCHHHH
Confidence 4 777654
No 316
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=7.4e-34 Score=344.85 Aligned_cols=217 Identities=24% Similarity=0.343 Sum_probs=170.0
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
+|+++||++.|++ +.+|+|+||+|.+||++||+||||||||||||+|+|. ..|.+|+|.+.|.++.. .....
T Consensus 1937 ~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gl--l~ptsG~I~i~G~~i~~-~~~~~--- 2010 (2272)
T TIGR01257 1937 ILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGD--TTVTSGDATVAGKSILT-NISDV--- 2010 (2272)
T ss_pred eEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCC--CCCCccEEEECCEECcc-hHHHH---
Confidence 5999999999986 5799999999999999999999999999999999985 46889999998887632 11111
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
.+..++.++. .......++.+++.. +..+........+.++.++|+.+||.. ..++++.+|||||||||+|
T Consensus 2011 ----r~~IGy~pQ~---~~L~~~LTv~E~L~l-~a~l~g~~~~~~~~~v~~lLe~lgL~~-~~dk~~~~LSGGqKqRLsl 2081 (2272)
T TIGR01257 2011 ----HQNMGYCPQF---DAIDDLLTGREHLYL-YARLRGVPAEEIEKVANWSIQSLGLSL-YADRLAGTYSGGNKRKLST 2081 (2272)
T ss_pred ----hhhEEEEecc---ccCCCCCCHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHcCCHH-HhcCChhhCCHHHHHHHHH
Confidence 0111222221 112234556665532 222222222223456778999999974 6799999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~ 378 (548)
|+||+.+|+||||||||+|||+.++..+.++|.++ +.|||++||+++++..+||||++|.+|+++.. |+.+...
T Consensus 2082 A~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~-Gs~q~Lk 2158 (2272)
T TIGR01257 2082 AIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCL-GTIQHLK 2158 (2272)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-CCHHHHH
Confidence 99999999999999999999999999999988764 57999999999999999999999999999865 6665543
No 317
>KOG0058|consensus
Probab=100.00 E-value=3e-34 Score=313.60 Aligned_cols=211 Identities=22% Similarity=0.377 Sum_probs=161.4
Q ss_pred ccEEEEeEEEEeCCc---eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 145 VDIKVENFSISAKGN---DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 145 ~~I~l~nls~~y~~~---~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
..|+++||+|+|..+ ++|+|+||+|++|+++|||||||+||||+..+|.. ++.|.+|+|.++|.++...+...+.
T Consensus 464 G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~r--fY~PtsG~IllDG~~i~~~~~~~lr 541 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLR--FYDPTSGRILLDGVPISDINHKYLR 541 (716)
T ss_pred ceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHH--hcCCCCCeEEECCeehhhcCHHHHH
Confidence 469999999999765 59999999999999999999999999999999985 5789999999999988766554443
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHH---------HHHHHHHhC--CCChhhhhccc
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEP---------RARRILAGL--GFSRAMQDRAT 290 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~---------~~~~~L~~l--gl~~~~~~~~~ 290 (548)
..+ +++.|. ...|..+..+|+.. ... ...++ .+.+.+..| |++. ....+.
T Consensus 542 ~~I-------g~V~QE----PvLFs~sI~eNI~Y------G~~-~~t~e~i~~AAk~ANah~FI~~~p~gY~T-~VGEkG 602 (716)
T KOG0058|consen 542 RKI-------GLVGQE----PVLFSGSIRENIAY------GLD-NATDEEIEAAAKMANAHEFITNFPDGYNT-VVGEKG 602 (716)
T ss_pred HHe-------eeeecc----ceeecccHHHHHhc------CCC-CCCHHHHHHHHHHhChHHHHHhCcccccc-ccCCcc
Confidence 322 223222 22344455554421 001 11111 122333333 4432 345566
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy11936 291 KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLY 368 (548)
Q Consensus 291 ~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~ 368 (548)
.+||||||||+||||||+.+|.||||||.||+||.++...+.+.|.+. +.|||+|.|.++.+.+ ||+|+++++|+++
T Consensus 603 ~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~-Ad~Ivvi~~G~V~ 681 (716)
T KOG0058|consen 603 SQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRH-ADQIVVIDKGRVV 681 (716)
T ss_pred ccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhh-ccEEEEEcCCeEE
Confidence 789999999999999999999999999999999999988888888654 4899999999999975 9999999999999
Q ss_pred EEcCCHHHHH
Q psy11936 369 YYKGNYSMFK 378 (548)
Q Consensus 369 ~~~g~y~~f~ 378 (548)
+. |++++..
T Consensus 682 E~-G~h~eLl 690 (716)
T KOG0058|consen 682 EM-GTHDELL 690 (716)
T ss_pred ec-ccHHHHh
Confidence 75 7777654
No 318
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1e-33 Score=322.38 Aligned_cols=211 Identities=23% Similarity=0.334 Sum_probs=158.9
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+|+|++ +.+|+|+||+|++|++++|+|+||||||||+++|+|. ..|.+|+|.+++.++...+...++..
T Consensus 455 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~--~~p~~G~I~idg~~i~~~~~~~~r~~ 532 (694)
T TIGR01846 455 AITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRL--YTPQHGQVLVDGVDLAIADPAWLRRQ 532 (694)
T ss_pred eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEehhhCCHHHHHHh
Confidence 5999999999953 5699999999999999999999999999999999984 57889999999988765443333222
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh----------hhhcccCCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA----------MQDRATKNF 293 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~~~~~~~~L 293 (548)
+....+. ...+..+..+++. ........+.+.++++..|+.+. .......+|
T Consensus 533 i~~v~q~-----------~~lf~~ti~eNi~-------~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~L 594 (694)
T TIGR01846 533 MGVVLQE-----------NVLFSRSIRDNIA-------LCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANL 594 (694)
T ss_pred CeEEccC-----------CeehhhhHHHHHh-------cCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCC
Confidence 2111111 1122333333331 11112234444555555544321 223445789
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
|||||||++|||||+.+|++|||||||++||+.+...+.+.|.++ +.|+|+|||+.+.+.. ||+|++|++|+++..
T Consensus 595 SgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~ii~l~~G~i~~~- 672 (694)
T TIGR01846 595 SGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRA-CDRIIVLEKGQIAES- 672 (694)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHh-CCEEEEEeCCEEEEe-
Confidence 999999999999999999999999999999999999999999876 4799999999999865 999999999999864
Q ss_pred CCHHHHH
Q psy11936 372 GNYSMFK 378 (548)
Q Consensus 372 g~y~~f~ 378 (548)
|++++..
T Consensus 673 g~~~~l~ 679 (694)
T TIGR01846 673 GRHEELL 679 (694)
T ss_pred CCHHHHH
Confidence 7777654
No 319
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.1e-33 Score=315.31 Aligned_cols=211 Identities=22% Similarity=0.315 Sum_probs=157.4
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++|++++|++ ..+|+|+||+|++|++++|+||||||||||+++|+|. ..|.+|+|.++++++...+...+...
T Consensus 313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~--~~p~~G~i~~~g~~~~~~~~~~~~~~ 390 (569)
T PRK10789 313 ELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRH--FDVSEGDIRFHDIPLTKLQLDSWRSR 390 (569)
T ss_pred cEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcc--cCCCCCEEEECCEEHhhCCHHHHHhh
Confidence 5899999999964 5699999999999999999999999999999999984 57889999999887654332222221
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh----------hhhcccCCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA----------MQDRATKNF 293 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~~~~~~~~L 293 (548)
+ .+..+. ...+..+..+++. .......++.+..+++..++.+. ..+.....|
T Consensus 391 i-------~~v~q~----~~lf~~ti~~Ni~-------~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~L 452 (569)
T PRK10789 391 L-------AVVSQT----PFLFSDTVANNIA-------LGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVML 452 (569)
T ss_pred e-------EEEccC----CeeccccHHHHHh-------cCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcC
Confidence 1 111111 1122334444331 11112234455555665555321 123345689
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
|||||||++|||||+.+|++|||||||++||+.+...+.+.|.++ +.|+|+|||+.+.+. .||+|++|++|+++..
T Consensus 453 SgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~-~~d~i~~l~~G~i~~~- 530 (569)
T PRK10789 453 SGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALT-EASEILVMQHGHIAQR- 530 (569)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHH-cCCEEEEEeCCEEEEe-
Confidence 999999999999999999999999999999999999999999875 579999999999886 5999999999999865
Q ss_pred CCHHHHH
Q psy11936 372 GNYSMFK 378 (548)
Q Consensus 372 g~y~~f~ 378 (548)
|++++..
T Consensus 531 g~~~~l~ 537 (569)
T PRK10789 531 GNHDQLA 537 (569)
T ss_pred cCHHHHH
Confidence 7766543
No 320
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.1e-33 Score=343.35 Aligned_cols=217 Identities=21% Similarity=0.290 Sum_probs=169.4
Q ss_pred cEEEEeEEEEeC--CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAK--GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~--~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||++.|+ ++.+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.|.++.. .....+
T Consensus 928 ~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGL--l~PtsG~I~i~G~dI~~-~~~~~r-- 1002 (2272)
T TIGR01257 928 GVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGL--LPPTSGTVLVGGKDIET-NLDAVR-- 1002 (2272)
T ss_pred eEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcC--CCCCceEEEECCEECcc-hHHHHh--
Confidence 599999999995 57899999999999999999999999999999999985 46889999998877632 111110
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
+..++..+. .......++.+++... ..+........+.++.++|+.+|+.+ ..++++.+|||||||||+|
T Consensus 1003 -----~~IG~~pQ~---~~L~~~LTV~E~L~f~-~~lkg~~~~~~~~~v~~lL~~vgL~~-~~~~~~~~LSGGqKQRLsL 1072 (2272)
T TIGR01257 1003 -----QSLGMCPQH---NILFHHLTVAEHILFY-AQLKGRSWEEAQLEMEAMLEDTGLHH-KRNEEAQDLSGGMQRKLSV 1072 (2272)
T ss_pred -----hcEEEEecC---CcCCCCCCHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHH
Confidence 111122211 1122345666655421 12222212233567889999999974 5789999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~ 378 (548)
|+||+.+|+||||||||+|||+.++..+.++|+++ +.|||++|||++++..+||||++|++|+++.. |+.....
T Consensus 1073 ArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~-Gs~~~Lk 1148 (2272)
T TIGR01257 1073 AIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCS-GTPLFLK 1148 (2272)
T ss_pred HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe-cCHHHHH
Confidence 99999999999999999999999999999999876 57999999999999999999999999999865 5555443
No 321
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=2.3e-33 Score=311.85 Aligned_cols=201 Identities=24% Similarity=0.299 Sum_probs=151.1
Q ss_pred cEEEEeEEEEeCCc-----eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHH
Q psy11936 146 DIKVENFSISAKGN-----DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~~-----~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~ 220 (548)
.|+++||+|+|++. ++|+|+||+|++|++++|+||||||||||+++|+|. ..|.+|.|.+++.++...+...+
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~--~~p~~G~i~~~g~~i~~~~~~~~ 414 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL--YIPQEGEILLDGAAVSADSRDDY 414 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEECCCCCHHHH
Confidence 59999999999752 599999999999999999999999999999999974 57899999999987754433322
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhh-----cccCCCCH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQD-----RATKNFSG 295 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~-----~~~~~LSG 295 (548)
...+....+...+ +..+..++ ......++++.++++.+++.+.... .....|||
T Consensus 415 ~~~i~~v~q~~~l-----------f~~ti~~n----------~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSg 473 (555)
T TIGR01194 415 RDLFSAIFADFHL-----------FDDLIGPD----------EGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALST 473 (555)
T ss_pred HhhCcEEccChhh-----------hhhhhhcc----------cccchhHHHHHHHHHHcCCchhhcccccccCCcccCCH
Confidence 2221111111111 11111111 1122235567788888888743211 12357999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH-h---hcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYL-Q---GWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L-~---~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|||||++|||||+.+|++|||||||++||+.+...+.+.+ . ..++|+|+|||+++.+. .||+|++|++|+++..
T Consensus 474 Gq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~-~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 474 GQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFE-LADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999998887643 2 24689999999999775 7999999999999863
No 322
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.2e-33 Score=315.02 Aligned_cols=210 Identities=22% Similarity=0.314 Sum_probs=158.2
Q ss_pred cEEEEeEEEEeCC---ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKG---NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~---~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
.|+++||+++|++ +.+|+|+||+|++|++++|+|+||||||||+++|+|. ..|.+|.|.+++.++...+...+..
T Consensus 337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl--~~p~~G~I~i~g~~i~~~~~~~~~~ 414 (576)
T TIGR02204 337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRF--YDPQSGRILLDGVDLRQLDPAELRA 414 (576)
T ss_pred eEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhc--cCCCCCEEEECCEEHHhcCHHHHHH
Confidence 4999999999964 5699999999999999999999999999999999984 4688899999988765433332222
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh----------hhhcccCC
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA----------MQDRATKN 292 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~~~~~~~~ 292 (548)
. ..++++. ...+..+..+|+. .......++++.++++.+|+.+. ........
T Consensus 415 ~-------i~~~~Q~----~~lf~~Ti~~Ni~-------~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~ 476 (576)
T TIGR02204 415 R-------MALVPQD----PVLFAASVMENIR-------YGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVT 476 (576)
T ss_pred h-------ceEEccC----CccccccHHHHHh-------cCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCc
Confidence 1 1222221 1223444444432 11112234556666666665321 11233457
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
||||||||++|||||+.+|++|||||||++||+.+...+.+.|.++ +.|+|+|||+...+. .||+|++|++|+++..
T Consensus 477 LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~-~~d~vi~l~~g~~~~~ 555 (576)
T TIGR02204 477 LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVL-KADRIVVMDQGRIVAQ 555 (576)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEEee
Confidence 9999999999999999999999999999999999999999888876 579999999998875 5999999999999975
Q ss_pred cCCHHHH
Q psy11936 371 KGNYSMF 377 (548)
Q Consensus 371 ~g~y~~f 377 (548)
|+++..
T Consensus 556 -g~~~~l 561 (576)
T TIGR02204 556 -GTHAEL 561 (576)
T ss_pred -ecHHHH
Confidence 666654
No 323
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=9.2e-34 Score=270.38 Aligned_cols=144 Identities=28% Similarity=0.358 Sum_probs=123.4
Q ss_pred EeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHH
Q psy11936 150 ENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVK 229 (548)
Q Consensus 150 ~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~ 229 (548)
.||+++|+++.+++++ |+|.+|++++|+|||||||||||++|+|. ..|.+|+|.+.+..+...
T Consensus 4 ~~l~~~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~~-------------- 66 (177)
T cd03222 4 PDCVKRYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQ--LIPNGDNDEWDGITPVYK-------------- 66 (177)
T ss_pred CCeEEEECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcC--CCCCCcEEEECCEEEEEE--------------
Confidence 4899999999999984 99999999999999999999999999985 467889998876532100
Q ss_pred HHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHcc
Q psy11936 230 RTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYI 309 (548)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~ 309 (548)
+. . + .||||||||++|||||+.
T Consensus 67 ---------------~q-------------------------------------~-----~-~LSgGq~qrv~laral~~ 88 (177)
T cd03222 67 ---------------PQ-------------------------------------Y-----I-DLSGGELQRVAIAAALLR 88 (177)
T ss_pred ---------------cc-------------------------------------c-----C-CCCHHHHHHHHHHHHHhc
Confidence 00 0 0 099999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy11936 310 EPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLY 368 (548)
Q Consensus 310 ~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~ 368 (548)
+|++|||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|+++-.+
T Consensus 89 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 89 NATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGV 151 (177)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence 99999999999999999999888888764 379999999999999999999999877443
No 324
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.4e-32 Score=280.77 Aligned_cols=194 Identities=25% Similarity=0.368 Sum_probs=134.9
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
.|+++||++. ++.+|+++||+|.+|+++||+|+|||||||||++|+|. ..|.+|.|.+.+. +....... .
T Consensus 39 ~l~i~nls~~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl--~~p~~G~I~i~g~-i~yv~q~~--~--- 108 (282)
T cd03291 39 NLFFSNLCLV--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE--LEPSEGKIKHSGR-ISFSSQFS--W--- 108 (282)
T ss_pred eEEEEEEEEe--cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCE-EEEEeCcc--c---
Confidence 5899999985 46799999999999999999999999999999999985 3567787766442 11000000 0
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh----------hhhhcccCCCCH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR----------AMQDRATKNFSG 295 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~----------~~~~~~~~~LSG 295 (548)
.+..++.+++.. +......++..++..+++.. ...+..+.+|||
T Consensus 109 ------------------l~~~tv~enl~~--------~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSg 162 (282)
T cd03291 109 ------------------IMPGTIKENIIF--------GVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSG 162 (282)
T ss_pred ------------------ccccCHHHHhhc--------ccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCH
Confidence 000011111100 00000001111222222211 122345679999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH-hhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYL-QGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L-~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
||+|||+|||||+.+|++|||||||++||+.++..+.+.+ ..+ +.|||+||||++++. .||+|++|++|+++.+ |
T Consensus 163 Gq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~-~~d~i~~l~~G~i~~~-g 240 (282)
T cd03291 163 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFY-G 240 (282)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHH-hCCEEEEEECCEEEEE-C
Confidence 9999999999999999999999999999999999887643 332 579999999999985 7999999999999865 5
Q ss_pred CHHHH
Q psy11936 373 NYSMF 377 (548)
Q Consensus 373 ~y~~f 377 (548)
+.+++
T Consensus 241 ~~~~~ 245 (282)
T cd03291 241 TFSEL 245 (282)
T ss_pred CHHHH
Confidence 55554
No 325
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=8e-34 Score=286.03 Aligned_cols=198 Identities=22% Similarity=0.298 Sum_probs=141.7
Q ss_pred eEEEEeCCc-eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEE-----------EeceeeccCchh
Q psy11936 151 NFSISAKGN-DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL-----------YCEQEVVADDLT 218 (548)
Q Consensus 151 nls~~y~~~-~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~-----------~~~q~i~~~~~~ 218 (548)
||+++|++. .+|+|+|+ +.+|++++|+|||||||||||++|+|. ..|.+|.|. +.++++...
T Consensus 5 ~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl--~~p~~G~I~~~~~~~~~~~~~~g~~~~~~--- 78 (255)
T cd03236 5 EPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGK--LKPNLGKFDDPPDWDEILDEFRGSELQNY--- 78 (255)
T ss_pred CcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCC--cCCCCceEeeccccchhhhhccCchhhhh---
Confidence 789999765 59999995 999999999999999999999999985 568888886 223222100
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHH
Q psy11936 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWR 298 (548)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqk 298 (548)
......... ...+..+.. .. ........+. .. +.....+..+.++++.+|+.. ..++.+.+|||||+
T Consensus 79 -~~~~~~~~~-~i~~~~~~~---~~-~~~~~~~~i~---~~---l~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~ 145 (255)
T cd03236 79 -FTKLLEGDV-KVIVKPQYV---DL-IPKAVKGKVG---EL---LKKKDERGKLDELVDQLELRH-VLDRNIDQLSGGEL 145 (255)
T ss_pred -hHHhhhccc-ceeeecchh---cc-CchHHHHHHH---HH---hchhHHHHHHHHHHHHcCCch-hhcCChhhCCHHHH
Confidence 000000000 000000000 00 0111111111 11 112233567889999999974 56889999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLY 368 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~ 368 (548)
||++|||||+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|+ |++.
T Consensus 146 qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~ 217 (255)
T cd03236 146 QRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPG 217 (255)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCC
Confidence 9999999999999999999999999999998888888764 5799999999999999999999995 4443
No 326
>KOG0055|consensus
Probab=100.00 E-value=3e-33 Score=320.80 Aligned_cols=208 Identities=25% Similarity=0.404 Sum_probs=156.6
Q ss_pred ccEEEEeEEEEeCCc---eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 145 VDIKVENFSISAKGN---DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 145 ~~I~l~nls~~y~~~---~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
..|+++||+|+|+.+ .+|+|+||.|++|+.++|||+|||||||++.+|.+ +..|..|.|.++|.++...+...++
T Consensus 349 g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~R--fydP~~G~V~idG~di~~~~~~~lr 426 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLAR--FYDPTSGEVLIDGEDIRNLNLKWLR 426 (1228)
T ss_pred cceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHH--hcCCCCceEEEcCccchhcchHHHH
Confidence 479999999999876 48999999999999999999999999999999997 5789999999999888665554443
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC-CChHHHHHHHHHhC-----------CCChhhhhcc
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA-DSAEPRARRILAGL-----------GFSRAMQDRA 289 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~~~L~~l-----------gl~~~~~~~~ 289 (548)
..+ +++.|.+ ..|..+..+++. .+. +....++.++++.. |++.. ....
T Consensus 427 ~~i-------glV~QeP----vlF~~tI~eNI~--------~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~-vge~ 486 (1228)
T KOG0055|consen 427 SQI-------GLVSQEP----VLFATTIRENIR--------YGKPDATREEIEEAAKAANAHDFILKLPDGYDTL-VGER 486 (1228)
T ss_pred hhc-------Ceeeech----hhhcccHHHHHh--------cCCCcccHHHHHHHHHHccHHHHHHhhHHhhccc-ccCC
Confidence 322 2222222 223334443331 111 11122222222211 33222 2233
Q ss_pred cCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 290 TKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 290 ~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
..+|||||||||||||||+.+|+||||||||++||+++...+.+.|.+. +.|.|+|+|++..+.+ ||+|++|++|+|
T Consensus 487 g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn-aD~I~v~~~G~I 565 (1228)
T KOG0055|consen 487 GVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN-ADKIAVMEEGKI 565 (1228)
T ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc-cCEEEEEECCEE
Confidence 4469999999999999999999999999999999999999999999876 5799999999999987 999999999999
Q ss_pred EEEcCCHHH
Q psy11936 368 YYYKGNYSM 376 (548)
Q Consensus 368 ~~~~g~y~~ 376 (548)
++. |+.++
T Consensus 566 vE~-G~h~E 573 (1228)
T KOG0055|consen 566 VEQ-GTHDE 573 (1228)
T ss_pred EEe-cCHHH
Confidence 975 44433
No 327
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=8e-34 Score=267.25 Aligned_cols=219 Identities=21% Similarity=0.337 Sum_probs=169.4
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEec-eeeccCchhHHHH-
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCE-QEVVADDLTAVES- 222 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~-q~i~~~~~~~~~~- 222 (548)
..|.++||+++|++..+|+++||+|.+||.-+|||||||||||+|.+|+|. ..|..|++.|.+ .++...+...+..
T Consensus 4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGK--trp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 4 IILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGK--TRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred ceEEEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeeccc--CCCCcceEEEcCchhhccCCHHHHHHh
Confidence 468999999999999999999999999999999999999999999999984 467789999887 4554332221111
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHH-------HHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKE-------IYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSG 295 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~-------~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 295 (548)
-++..++... .+...++.+|+.. ++..+........+.++.++|...||.+ ..++....||-
T Consensus 82 GIGRKFQ~Pt----------Vfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~-~~~~~A~~LSH 150 (249)
T COG4674 82 GIGRKFQKPT----------VFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGD-ERDRLAALLSH 150 (249)
T ss_pred ccCccccCCe----------ehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccch-hhhhhhhhhcc
Confidence 0111111111 1223344444422 1112222122344568999999999985 56889999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCC
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~ 373 (548)
||||++.|+..|+++|++||||||++|+-........++|+.+ ..+||+|.|||.|+..+|++|-+|+.|.+.. .|+
T Consensus 151 GqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~-EGs 229 (249)
T COG4674 151 GQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLA-EGS 229 (249)
T ss_pred chhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceee-ccc
Confidence 9999999999999999999999999999998888888888876 3699999999999999999999999999975 588
Q ss_pred HHHH
Q psy11936 374 YSMF 377 (548)
Q Consensus 374 y~~f 377 (548)
.+..
T Consensus 230 ld~v 233 (249)
T COG4674 230 LDEV 233 (249)
T ss_pred HHHh
Confidence 7654
No 328
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=1.8e-33 Score=277.83 Aligned_cols=193 Identities=26% Similarity=0.360 Sum_probs=140.6
Q ss_pred EEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCC
Q psy11936 167 LLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFS 246 (548)
Q Consensus 167 l~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 246 (548)
|+|++|+++||+|+||||||||+++|+|. ..|.+|+|.+++.++.. .. ....++.+...+. ..+.
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~-----~~-------~~i~~v~q~~~~~-~~~~ 65 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGL--IPPAKGTVKVAGASPGK-----GW-------RHIGYVPQRHEFA-WDFP 65 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCccchH-----hh-------CcEEEeccccccc-CCCC
Confidence 57899999999999999999999999984 46788999988765310 00 0111111111000 0011
Q ss_pred hhHHHHHHHHHHHH-HhcC--CCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q psy11936 247 SEQQEQLKEIYEEL-KAIG--ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHL 323 (548)
Q Consensus 247 ~~~~~~l~~~~~~l-~~~~--~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~L 323 (548)
.++.+++....... .... ......++.++++.+|+.. ..++++.+|||||||||+|||||+.+|++|||||||++|
T Consensus 66 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 66 ISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTE-LADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred ccHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCch-hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 23333332110000 0010 1122356788999999974 568889999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 324 DLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 324 D~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|+.++.++.++|.++ +.|||+||||++++..+||+|++| +|+++. .|+.+++
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~-~~~~~~~ 199 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIA-DGTPQQL 199 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEe-ecCHHHh
Confidence 999999999999865 469999999999999999999999 799985 4666654
No 329
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=4.7e-33 Score=265.25 Aligned_cols=153 Identities=23% Similarity=0.281 Sum_probs=121.3
Q ss_pred ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHH
Q psy11936 159 NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECA 238 (548)
Q Consensus 159 ~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 238 (548)
..+|+|+||+|.+|++++|+|||||||||||++|.+ ..|.+.+.+..... . +
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~------~~G~v~~~~~~~~~-~-------------~-------- 59 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY------ASGKARLISFLPKF-S-------------R-------- 59 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh------cCCcEEECCccccc-c-------------c--------
Confidence 468999999999999999999999999999999863 35555544321000 0 0
Q ss_pred HHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccC--CCEEEE
Q psy11936 239 KLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIE--PTLLLL 316 (548)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~--P~lLLL 316 (548)
....+. . . .++|..+++.....++++.+|||||+||++|||||+.+ |++|||
T Consensus 60 --~~~~~~---~------------------q---~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLl 113 (176)
T cd03238 60 --NKLIFI---D------------------Q---LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFIL 113 (176)
T ss_pred --ccEEEE---h------------------H---HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 000000 0 0 34678888864346888999999999999999999999 999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCE
Q psy11936 317 DEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQK 366 (548)
Q Consensus 317 DEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~ 366 (548)
||||++||+.+...+.++|.++ +.|||+|||+++++ ..||+|++|++|.
T Consensus 114 DEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~-~~~d~i~~l~~g~ 165 (176)
T cd03238 114 DEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVL-SSADWIIDFGPGS 165 (176)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-HhCCEEEEECCCC
Confidence 9999999999999999988764 68999999999998 4799999997644
No 330
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6e-33 Score=259.04 Aligned_cols=153 Identities=38% Similarity=0.566 Sum_probs=127.8
Q ss_pred EEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhH
Q psy11936 149 VENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADV 228 (548)
Q Consensus 149 l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~ 228 (548)
++|+++.|.+..+|+++||+|.+|++++|+|+||||||||+++|+|. ..+..|++.+.+..+.......
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~--~~~~~G~i~~~~~~~~~~~~~~--------- 70 (157)
T cd00267 2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGL--LKPTSGEILIDGKDIAKLPLEE--------- 70 (157)
T ss_pred eEEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCccEEEECCEEcccCCHHH---------
Confidence 67999999888899999999999999999999999999999999985 3577899988876542110000
Q ss_pred HHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHc
Q psy11936 229 KRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALY 308 (548)
Q Consensus 229 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~ 308 (548)
+...+++ +.+|||||+||++|||+|+
T Consensus 71 ----------------------------------------------~~~~i~~--------~~qlS~G~~~r~~l~~~l~ 96 (157)
T cd00267 71 ----------------------------------------------LRRRIGY--------VPQLSGGQRQRVALARALL 96 (157)
T ss_pred ----------------------------------------------HHhceEE--------EeeCCHHHHHHHHHHHHHh
Confidence 0001111 1129999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCE
Q psy11936 309 IEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQK 366 (548)
Q Consensus 309 ~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~ 366 (548)
.+|+++||||||++||+.++.++.++|..+ +.|+|+|||+++++..+||++++|++|+
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 999999999999999999999999998765 3699999999999999999999999874
No 331
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-33 Score=259.66 Aligned_cols=220 Identities=23% Similarity=0.299 Sum_probs=159.8
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
.+++.++|+.|++..-++||||.+.+||++||||.|||||||||+||++. ..|..|.|.|....-...+.-.......
T Consensus 6 LL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~r--l~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 6 LLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGR--LTPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred ceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcc--cCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 58899999999999999999999999999999999999999999999986 3688899988653221111111100000
Q ss_pred hhHH--HHHHHHHHHHHhhhc---CChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHH
Q psy11936 226 ADVK--RTELLAECAKLEAAD---FSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300 (548)
Q Consensus 226 ~~~~--~~~l~~~~~~~~~~~---~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqR 300 (548)
...- ..++..+.......+ ...+..+.+..+- ..........+..+|+.+.++....+..|.++||||+||
T Consensus 84 R~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G----~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQR 159 (258)
T COG4107 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIG----ARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQR 159 (258)
T ss_pred HHHhhhccceeecCccccceeeeccCCccchhHHhhh----hhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHH
Confidence 0000 011111111000000 0111122221110 011123566788999999998777788899999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG----WKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~----~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
+.|||-|+..|.++++||||.+||...+..|.++++. ++.++||||||+..+.-+++|.++|.+|++++.+
T Consensus 160 LQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~G 234 (258)
T COG4107 160 LQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESG 234 (258)
T ss_pred HHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccc
Confidence 9999999999999999999999999988888887765 4679999999999999999999999999998753
No 332
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=5.4e-33 Score=307.04 Aligned_cols=196 Identities=26% Similarity=0.409 Sum_probs=149.6
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+|+|++ +++|+|+||+|++|++++|+|+||||||||+++|+|. ..|.+|.|.+++.++...+...++..
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~--~~~~~G~I~~~g~~i~~~~~~~lr~~ 397 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGF--VDPTEGSIAVNGVPLADADADSWRDQ 397 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCEehhhCCHHHHHhh
Confidence 5999999999976 3699999999999999999999999999999999984 57889999999987754443322221
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh----------hhhcccCCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA----------MQDRATKNF 293 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~~~~~~~~L 293 (548)
+ .++.+. ...+..+..+++.. ......++.+.++++..++.+. .......+|
T Consensus 398 i-------~~v~Q~----~~lf~~ti~~Ni~~-------~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~L 459 (529)
T TIGR02857 398 I-------AWVPQH----PFLFAGTIAENIRL-------ARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGL 459 (529)
T ss_pred e-------EEEcCC----CcccCcCHHHHHhc-------cCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccC
Confidence 1 122221 12234455554421 1112234566667777666431 123345689
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEE
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHL 362 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L 362 (548)
|||||||++|||||+.+|++|||||||++||+.+...+.+.|.++ ++|+|+|||+++.+. .||+|++|
T Consensus 460 SgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~~l 529 (529)
T TIGR02857 460 SGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAE-RADRIVVL 529 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH-hCCEEEeC
Confidence 999999999999999999999999999999999999999999875 579999999999985 69999875
No 333
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=7.6e-33 Score=334.34 Aligned_cols=212 Identities=19% Similarity=0.280 Sum_probs=161.7
Q ss_pred cEEEEeEEEEeCC---ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCC----------------------
Q psy11936 146 DIKVENFSISAKG---NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVP---------------------- 200 (548)
Q Consensus 146 ~I~l~nls~~y~~---~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~---------------------- 200 (548)
.|+++||+|+|++ .++|+|+||+|++|+++||||+||||||||+++|+|. ..|
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~--ydp~~~~~~~~~~~~~~~~~~~~~~ 1242 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRF--YDLKNDHHIVFKNEHTNDMTNEQDY 1242 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHh--CCCcccccccccccccccccccccc
Confidence 5999999999963 4799999999999999999999999999999999985 333
Q ss_pred --------------------------------CCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChh
Q psy11936 201 --------------------------------PNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSE 248 (548)
Q Consensus 201 --------------------------------~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 248 (548)
.+|.|.++|.++...+...++..+ +++.|. ...|..+
T Consensus 1243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i-------~~V~Qe----p~LF~gT 1311 (1466)
T PTZ00265 1243 QGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLF-------SIVSQE----PMLFNMS 1311 (1466)
T ss_pred ccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhc-------cEeCCC----Ccccccc
Confidence 589999999888655544443322 222222 2234555
Q ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh----------hhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q psy11936 249 QQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA----------MQDRATKNFSGGWRMRVSLARALYIEPTLLLLDE 318 (548)
Q Consensus 249 ~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDE 318 (548)
..+++.. -.....++.+.++++..++.+. ........||||||||++|||||+.+|+||||||
T Consensus 1312 IreNI~~-------g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDE 1384 (1466)
T PTZ00265 1312 IYENIKF-------GKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDE 1384 (1466)
T ss_pred HHHHHhc-------CCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 5555421 1112234455666665554321 1233456799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeC----CEEEEEcCCHHHHH
Q psy11936 319 PTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQ----QKLYYYKGNYSMFK 378 (548)
Q Consensus 319 PTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~----G~i~~~~g~y~~f~ 378 (548)
|||+||.++...+.+.|.+. +.|+|+|||++..+. .||+|++|++ |+++...|++++..
T Consensus 1385 aTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~-~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1385 ATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIK-RSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred cccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHH-hCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 99999999999999988875 579999999999986 4999999999 89765568888764
No 334
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1.3e-32 Score=310.52 Aligned_cols=217 Identities=21% Similarity=0.251 Sum_probs=163.7
Q ss_pred cEEEEeEEEEeCC----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 146 DIKVENFSISAKG----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~~----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
+|+++|++++|++ ..+|+|+||+|.+|++++|+|+|||||||||++|+|. ..|.+|++.++++++...+...+.
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl--~~~~~G~i~~~g~~i~~~~~~~~~ 81 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCL--DKPTSGTYRVAGQDVATLDADALA 81 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCeEEEECCEEcCcCCHHHHH
Confidence 5899999999953 4699999999999999999999999999999999985 467899999999876543322111
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
... .+...+..+.. ..+...+..+++.... ............++.++++.+|+.. ..++.+.+|||||+||+
T Consensus 82 ~~~---~~~i~~v~q~~---~l~~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~l~~lgl~~-~~~~~~~~LS~Gq~qrv 153 (648)
T PRK10535 82 QLR---REHFGFIFQRY---HLLSHLTAAQNVEVPA-VYAGLERKQRLLRAQELLQRLGLED-RVEYQPSQLSGGQQQRV 153 (648)
T ss_pred HHH---hccEEEEeCCc---ccCCCCCHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHCCChh-hhcCCcccCCHHHHHHH
Confidence 000 00111111111 1112234444443211 1111111223456788999999974 57899999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCC
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~ 373 (548)
+|||||+.+|++|||||||++||+.++.++.++|.++ +.|+|+|||+++++. .||++++|++|+++..+..
T Consensus 154 ~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~ 227 (648)
T PRK10535 154 SIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAA-QAERVIEIRDGEIVRNPPA 227 (648)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHH-hCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999999999999998765 579999999999886 6999999999999977554
No 335
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=3.9e-33 Score=314.51 Aligned_cols=216 Identities=24% Similarity=0.322 Sum_probs=159.6
Q ss_pred EEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhh
Q psy11936 148 KVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKAD 227 (548)
Q Consensus 148 ~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~ 227 (548)
.++|++++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|...+...+|+|.++++++... .
T Consensus 70 ~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~----~------- 138 (659)
T PLN03211 70 KISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQ----I------- 138 (659)
T ss_pred ccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchh----h-------
Confidence 36688999999999999999999999999999999999999999998632112379999988765210 0
Q ss_pred HHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC---CChHHHHHHHHHhCCCChhh----hhcccCCCCHHHHHH
Q psy11936 228 VKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA---DSAEPRARRILAGLGFSRAM----QDRATKNFSGGWRMR 300 (548)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~---~~~~~~~~~~L~~lgl~~~~----~~~~~~~LSGGqkqR 300 (548)
.+..+++.+. .......++.+++... ..+..... .+...++.++++.+|+.+.. .++.+..||||||||
T Consensus 139 ~~~i~yv~Q~---~~l~~~lTV~E~l~~~-a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqR 214 (659)
T PLN03211 139 LKRTGFVTQD---DILYPHLTVRETLVFC-SLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKR 214 (659)
T ss_pred ccceEEECcc---cccCCcCCHHHHHHHH-HHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhH
Confidence 0111222221 1112234566555321 11110011 11235678899999996421 244577899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHH-HHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQS-FLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~-~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
|+||++|+.+|+||||||||+|||+.+..++.++|+++ +.|||++||+++ .+..+||+|++|++|++++. |+.++
T Consensus 215 v~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~-G~~~~ 293 (659)
T PLN03211 215 VSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFF-GKGSD 293 (659)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEE-CCHHH
Confidence 99999999999999999999999999999999998864 579999999998 47789999999999999854 66655
Q ss_pred HHH
Q psy11936 377 FKK 379 (548)
Q Consensus 377 f~~ 379 (548)
...
T Consensus 294 ~~~ 296 (659)
T PLN03211 294 AMA 296 (659)
T ss_pred HHH
Confidence 443
No 336
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.9e-32 Score=332.07 Aligned_cols=210 Identities=22% Similarity=0.298 Sum_probs=162.2
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+++|.+ .++|+|+||+|++||++||||+||||||||+++|.|. ..|.+|+|.++|.++...+...++..
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl--~~p~~G~I~IDG~dI~~i~l~~LR~~ 1314 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRI--VELERGRILIDGCDISKFGLMDLRKV 1314 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCc--CCCCCceEEECCEecccCCHHHHHhc
Confidence 5999999999964 3699999999999999999999999999999999974 57889999999998866554444332
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh----------hhhcccCCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA----------MQDRATKNF 293 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~~~~~~~~L 293 (548)
+. +++|. ...|..+..+|+.. +....++.+.++|+..++.+. .......+|
T Consensus 1315 Is-------iVpQd----p~LF~GTIreNLd~--------~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nL 1375 (1622)
T PLN03130 1315 LG-------IIPQA----PVLFSGTVRFNLDP--------FNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENF 1375 (1622)
T ss_pred cE-------EECCC----CccccccHHHHhCc--------CCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCC
Confidence 22 22221 12234455444421 112234456666666555321 122334689
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
|||||||++|||||+.+|+|||||||||+||..+...+.+.|++. ++|||+|+|+++.+.. ||+|++|++|+|+++
T Consensus 1376 SgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE~- 1453 (1622)
T PLN03130 1376 SVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILVLDAGRVVEF- 1453 (1622)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh-CCEEEEEECCEEEEe-
Confidence 999999999999999999999999999999999999999999875 5899999999999976 999999999999987
Q ss_pred CCHHHHH
Q psy11936 372 GNYSMFK 378 (548)
Q Consensus 372 g~y~~f~ 378 (548)
|++++..
T Consensus 1454 Gt~~eLl 1460 (1622)
T PLN03130 1454 DTPENLL 1460 (1622)
T ss_pred CCHHHHH
Confidence 6666554
No 337
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3e-32 Score=331.14 Aligned_cols=210 Identities=20% Similarity=0.318 Sum_probs=162.4
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+++|.+ .++|+|+||+|++|+++||||+||||||||+++|.|. ..|.+|+|.++|.++...+...++..
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl--~~p~~G~I~IdG~di~~i~~~~lR~~ 1311 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRI--VELEKGRIMIDDCDVAKFGLTDLRRV 1311 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CcCCCceEEECCEEhhhCCHHHHHhh
Confidence 5999999999953 4799999999999999999999999999999999974 57889999999998865544433322
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhh----------hhcccCCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAM----------QDRATKNF 293 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~----------~~~~~~~L 293 (548)
+ .+++|. ...|..+..+|+.. +....++.+.++|+..++.+.. ......+|
T Consensus 1312 i-------~iVpQd----p~LF~gTIr~NL~~--------~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~L 1372 (1495)
T PLN03232 1312 L-------SIIPQS----PVLFSGTVRFNIDP--------FSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENF 1372 (1495)
T ss_pred c-------EEECCC----CeeeCccHHHHcCC--------CCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCC
Confidence 2 222221 12234455544421 1122345566666666654321 22334579
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
|||||||++|||||+++|+|||||||||+||.++...+.+.|++. ++|+|+|+|+++.+.. ||+|++|++|+++++
T Consensus 1373 SgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~- 1450 (1495)
T PLN03232 1373 SVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-CDKILVLSSGQVLEY- 1450 (1495)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEE-
Confidence 999999999999999999999999999999999999999999875 5799999999999976 999999999999987
Q ss_pred CCHHHHH
Q psy11936 372 GNYSMFK 378 (548)
Q Consensus 372 g~y~~f~ 378 (548)
|++++..
T Consensus 1451 Gt~~eLl 1457 (1495)
T PLN03232 1451 DSPQELL 1457 (1495)
T ss_pred CCHHHHH
Confidence 6666654
No 338
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-32 Score=259.99 Aligned_cols=220 Identities=20% Similarity=0.316 Sum_probs=168.3
Q ss_pred ccEEEEeEEEEeCCc-eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 145 VDIKVENFSISAKGN-DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 145 ~~I~l~nls~~y~~~-~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
++|+++||+.+.+++ .||++|||+|++||+.+|+||||||||||.++|+|..-+..+.|+|.+.++++...........
T Consensus 2 ~~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 2 MMLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred ceeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 469999999999985 9999999999999999999999999999999999976667889999999999876543321110
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcC--CCChHHHHHHHHHhCCCChhhhhcccC-CCCHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG--ADSAEPRARRILAGLGFSRAMQDRATK-NFSGGWRMR 300 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~--~~~~~~~~~~~L~~lgl~~~~~~~~~~-~LSGGqkqR 300 (548)
...+.+|. .......+..+.+...+....... .......+++.++.++++..+++|++. .||||||+|
T Consensus 82 ------GifLafQ~---P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR 152 (251)
T COG0396 82 ------GIFLAFQY---PVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKR 152 (251)
T ss_pred ------CCEEeecC---CccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHH
Confidence 00011111 111122233333322111111100 123466788999999999889999986 599999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhh-cCEEEEEeCCEEEEEcCC
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNV-CNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~v-adrIi~L~~G~i~~~~g~ 373 (548)
..|+.+++.+|++.|||||-||||+.+...+.+.+..+ +.++|+|||....++.+ .|++.+|-+|+|+..+++
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~ 229 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP 229 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH
Confidence 99999999999999999999999999988887776655 57999999999999876 399999999999976544
No 339
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.8e-32 Score=302.98 Aligned_cols=183 Identities=26% Similarity=0.372 Sum_probs=138.8
Q ss_pred cEEEEeEEEEeCC-ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAKG-NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~-~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.|+++||+|+|++ +++|+|+||+|++|++++||||||||||||+++|+|. ..|.+|+|.++++++... ...++..
T Consensus 334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~--~~p~~G~I~i~g~~i~~~-~~~lr~~- 409 (529)
T TIGR02868 334 TLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGL--LDPLQGEVTLDGVSVSSL-QDELRRR- 409 (529)
T ss_pred eEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCEEhhhH-HHHHHhh-
Confidence 5999999999975 5699999999999999999999999999999999974 578899999999877533 2222221
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhh----------hhcccCCCC
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAM----------QDRATKNFS 294 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~----------~~~~~~~LS 294 (548)
..+++|. ...++.+..+|+.. ......++++.++++..++.+.. .......||
T Consensus 410 ------i~~V~Q~----~~lF~~TI~eNI~~-------g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LS 472 (529)
T TIGR02868 410 ------ISVFAQD----AHLFDTTVRDNLRL-------GRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLS 472 (529)
T ss_pred ------eEEEccC----cccccccHHHHHhc-------cCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCC
Confidence 1222221 12244455555421 11223456677777777765321 122345699
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCH
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQ 349 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~ 349 (548)
||||||++|||||+.+|+|||||||||+||..+...+.+.|.+. ++|+|+|||++
T Consensus 473 GGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 473 GGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999999876 57999999974
No 340
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=6.4e-32 Score=305.42 Aligned_cols=184 Identities=21% Similarity=0.329 Sum_probs=139.8
Q ss_pred cEEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEE--------eceeeccCc
Q psy11936 146 DIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILY--------CEQEVVADD 216 (548)
Q Consensus 146 ~I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~--------~~q~i~~~~ 216 (548)
.|+++||+++|+ ++.+|+|+||+|++|+++||+||||||||||+++|+|. ..+.+|.|.+ ..|+....
T Consensus 451 ~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl--~~~~~G~i~~~~~~~i~~v~Q~~~l~- 527 (659)
T TIGR00954 451 GIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGEL--WPVYGGRLTKPAKGKLFYVPQRPYMT- 527 (659)
T ss_pred eEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCeEeecCCCcEEEECCCCCCC-
Confidence 599999999995 56899999999999999999999999999999999985 3455665543 33322111
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhc-CCCChHHHHHHHHHhCCCChhhhhcc------
Q psy11936 217 LTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI-GADSAEPRARRILAGLGFSRAMQDRA------ 289 (548)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~~~~~~L~~lgl~~~~~~~~------ 289 (548)
..+..+++..... .... .....+.++.++++.+|+.+ ..+++
T Consensus 528 -----------------------------~~tv~eni~~~~~-~~~~~~~~~~~~~i~~~l~~~~l~~-~~~~~~g~~~~ 576 (659)
T TIGR00954 528 -----------------------------LGTLRDQIIYPDS-SEDMKRRGLSDKDLEQILDNVQLTH-ILEREGGWSAV 576 (659)
T ss_pred -----------------------------CcCHHHHHhcCCC-hhhhhccCCCHHHHHHHHHHcCCHH-HHhhcCCcccc
Confidence 1122222210000 0000 01123455677888888864 33443
Q ss_pred ---cCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeC
Q psy11936 290 ---TKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQ 364 (548)
Q Consensus 290 ---~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~ 364 (548)
..+||||||||++|||||+.+|++|||||||++||+.+..++.+.+++.+.|+|+||||++++ ..||+|++|+.
T Consensus 577 ~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~-~~~d~il~l~~ 653 (659)
T TIGR00954 577 QDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLW-KYHEYLLYMDG 653 (659)
T ss_pred cccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHH-HhCCEEEEEeC
Confidence 378999999999999999999999999999999999999999999999889999999999987 57999999963
No 341
>PTZ00243 ABC transporter; Provisional
Probab=99.98 E-value=1.2e-31 Score=326.02 Aligned_cols=210 Identities=18% Similarity=0.233 Sum_probs=163.5
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+++|.+ ..+|+||||+|.+|+++||||++|||||||+++|.|. ..|.+|.|.++|.++...+...++..
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl--~~p~~G~I~IDG~di~~i~l~~LR~~ 1385 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRM--VEVCGGEIRVNGREIGAYGLRELRRQ 1385 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEEcccCCHHHHHhc
Confidence 5999999999964 3599999999999999999999999999999999974 57889999999998865554443322
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhh----------hhcccCCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAM----------QDRATKNF 293 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~----------~~~~~~~L 293 (548)
+ .+++|. ...|..+..+|+.. .....++.+.++|+..|+.+.. ......+|
T Consensus 1386 I-------~iVpQd----p~LF~gTIreNIdp--------~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nL 1446 (1560)
T PTZ00243 1386 F-------SMIPQD----PVLFDGTVRQNVDP--------FLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNY 1446 (1560)
T ss_pred c-------eEECCC----CccccccHHHHhCc--------ccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcC
Confidence 2 222221 12344555555421 1122356677778777775321 12233679
Q ss_pred CHHHHHHHHHHHHHccC-CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 294 SGGWRMRVSLARALYIE-PTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~-P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|||||||++|||||+.+ |+|||||||||+||..+...+.+.|.+. ++|||+|+|+++.+.. ||+|++|++|+|+++
T Consensus 1447 SgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~VvE~ 1525 (1560)
T PTZ00243 1447 SVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQ-YDKIIVMDHGAVAEM 1525 (1560)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHh-CCEEEEEECCEEEEE
Confidence 99999999999999995 8999999999999999999999999874 5799999999999965 999999999999987
Q ss_pred cCCHHHHH
Q psy11936 371 KGNYSMFK 378 (548)
Q Consensus 371 ~g~y~~f~ 378 (548)
|++++..
T Consensus 1526 -Gt~~eLl 1532 (1560)
T PTZ00243 1526 -GSPRELV 1532 (1560)
T ss_pred -CCHHHHH
Confidence 6666543
No 342
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.98 E-value=1.2e-31 Score=326.42 Aligned_cols=209 Identities=20% Similarity=0.282 Sum_probs=161.3
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+++|+. .++|+|+||+|++|+++||||++|||||||+++|.|. ..|.+|+|.++|.++...+...++..
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl--~~~~~G~I~IdG~dI~~i~~~~LR~~ 1361 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRI--NESAEGEIIIDGLNIAKIGLHDLRFK 1361 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC--ccCCCCeEEECCEEccccCHHHHHhc
Confidence 5999999999964 4699999999999999999999999999999999974 57889999999999866554444332
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh----------hhhcccCCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA----------MQDRATKNF 293 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~~~~~~~~L 293 (548)
+. +++|. ...|..+..+|+.. .+ ...++.+.++|+..++.+. ........|
T Consensus 1362 i~-------iVpQd----p~LF~gTIr~NLdp-------~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~L 1422 (1522)
T TIGR00957 1362 IT-------IIPQD----PVLFSGSLRMNLDP-------FS-QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENL 1422 (1522)
T ss_pred Ce-------EECCC----CcccCccHHHHcCc-------cc-CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcC
Confidence 22 22221 12234454444421 11 2234455666666655421 112234579
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
|||||||++|||||+.+|+||||||||++||.++...+.+.|++. ++|||+|+|+++.+.. ||+|++|++|+|+++
T Consensus 1423 SgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~-~DrIlVld~G~IvE~- 1500 (1522)
T TIGR00957 1423 SVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMD-YTRVIVLDKGEVAEF- 1500 (1522)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEEE-
Confidence 999999999999999999999999999999999999999999864 5799999999999976 999999999999987
Q ss_pred CCHHHH
Q psy11936 372 GNYSMF 377 (548)
Q Consensus 372 g~y~~f 377 (548)
|++++.
T Consensus 1501 G~~~eL 1506 (1522)
T TIGR00957 1501 GAPSNL 1506 (1522)
T ss_pred CCHHHH
Confidence 565554
No 343
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.98 E-value=1.9e-31 Score=322.15 Aligned_cols=206 Identities=21% Similarity=0.342 Sum_probs=150.2
Q ss_pred cEEEEeEEEEeCC---ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEe-ceeeccCchhHHH
Q psy11936 146 DIKVENFSISAKG---NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYC-EQEVVADDLTAVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~~---~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~-~q~i~~~~~~~~~ 221 (548)
.|+++||+|+|++ .++|+|+||+|++|+++|||||||||||||+++|+|. ..|.+|.|.++ +.++...+...++
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl--~~p~~G~I~i~~g~~i~~~~~~~lr 459 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERL--YDPTEGDIIINDSHNLKDINLKWWR 459 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHh--ccCCCCeEEEeCCcchhhCCHHHHH
Confidence 5999999999975 3699999999999999999999999999999999984 57889999985 4554332222222
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHH--------------------------------------------
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIY-------------------------------------------- 257 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~-------------------------------------------- 257 (548)
..+. ++.+.. ..+..+..+++....
T Consensus 460 ~~Ig-------~V~Q~~----~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (1466)
T PTZ00265 460 SKIG-------VVSQDP----LLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNT 528 (1466)
T ss_pred Hhcc-------Eecccc----cchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccc
Confidence 2111 222111 112223333332100
Q ss_pred ----HHHHh--cCCCChHHHHHHHHHhCCCChhh----------hhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC
Q psy11936 258 ----EELKA--IGADSAEPRARRILAGLGFSRAM----------QDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTN 321 (548)
Q Consensus 258 ----~~l~~--~~~~~~~~~~~~~L~~lgl~~~~----------~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn 321 (548)
+.+.. ......++.+.++++.+++.+.. ....+.+|||||||||+|||||+.+|+||||||||+
T Consensus 529 ~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTS 608 (1466)
T PTZ00265 529 TDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATS 608 (1466)
T ss_pred cchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 00000 00012345677777777775321 245678899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCC
Q psy11936 322 HLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQ 365 (548)
Q Consensus 322 ~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G 365 (548)
+||+.+...+.+.|.++ +.|+|+|||+++.+ ..||+|++|++|
T Consensus 609 aLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 609 SLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTI-RYANTIFVLSNR 655 (1466)
T ss_pred ccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHH-HhCCEEEEEeCC
Confidence 99999999999999876 47999999999998 579999999986
No 344
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.98 E-value=2e-31 Score=263.89 Aligned_cols=97 Identities=24% Similarity=0.322 Sum_probs=87.4
Q ss_pred HHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEec
Q psy11936 273 RRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEP--TLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSH 347 (548)
Q Consensus 273 ~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P--~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSH 347 (548)
.++|..+|+.....++++.+|||||+|||+|||||+.+| ++|||||||++||+.++..+.++|..+ +.|||+|||
T Consensus 118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH 197 (226)
T cd03270 118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH 197 (226)
T ss_pred HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 568999999754568899999999999999999999998 599999999999999999998888654 579999999
Q ss_pred CHHHHHhhcCEEEEE------eCCEEEEE
Q psy11936 348 DQSFLDNVCNEIIHL------DQQKLYYY 370 (548)
Q Consensus 348 D~~~l~~vadrIi~L------~~G~i~~~ 370 (548)
|++++ .+||+|++| ++|+|+++
T Consensus 198 ~~~~~-~~~d~i~~l~~~~~~~~G~iv~~ 225 (226)
T cd03270 198 DEDTI-RAADHVIDIGPGAGVHGGEIVAQ 225 (226)
T ss_pred CHHHH-HhCCEEEEeCCCccccCCEEEec
Confidence 99998 489999999 89999875
No 345
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.97 E-value=5.8e-32 Score=281.65 Aligned_cols=184 Identities=27% Similarity=0.344 Sum_probs=137.0
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHH
Q psy11936 177 LVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEI 256 (548)
Q Consensus 177 LvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 256 (548)
|+|||||||||||++|+|. ..|.+|+|.+.+.++..... .. +...++++.. ..+...++.+++...
T Consensus 1 l~G~nGsGKSTLl~~iaGl--~~p~~G~I~i~g~~i~~~~~--~~-------~~i~~v~q~~---~l~~~~tv~enl~~~ 66 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGF--EQPDSGSIMLDGEDVTNVPP--HL-------RHINMVFQSY---ALFPHMTVEENVAFG 66 (325)
T ss_pred CcCCCCCCHHHHHHHHHCC--CCCCceEEEECCEECCCCCH--HH-------CCEEEEecCc---cccCCCcHHHHHHHH
Confidence 6899999999999999985 46889999998887632111 00 0111112111 112234555555322
Q ss_pred HHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh
Q psy11936 257 YEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQ 336 (548)
Q Consensus 257 ~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~ 336 (548)
.. +..........++.++++.+|+.. ..++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|.
T Consensus 67 ~~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~ 144 (325)
T TIGR01187 67 LK-MRKVPRAEIKPRVLEALRLVQLEE-FADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELK 144 (325)
T ss_pred Hh-hcCCCHHHHHHHHHHHHHHcCCcc-hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 11 111111122456788999999974 6789999999999999999999999999999999999999999999998887
Q ss_pred hc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 337 GW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 337 ~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
++ +.|||+||||++++..+||+|++|++|++... |+.+++
T Consensus 145 ~l~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~-g~~~~~ 188 (325)
T TIGR01187 145 TIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQI-GTPEEI 188 (325)
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-cCHHHH
Confidence 64 57999999999999999999999999999865 555443
No 346
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=6e-32 Score=252.12 Aligned_cols=221 Identities=16% Similarity=0.284 Sum_probs=169.1
Q ss_pred cEEEEeEEEEeCCc---------eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc
Q psy11936 146 DIKVENFSISAKGN---------DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD 216 (548)
Q Consensus 146 ~I~l~nls~~y~~~---------~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~ 216 (548)
.++++|+++.|..+ .+++.|||++..|+.+||||.||||||||.|+|+|. ..|++|+|.++++.+...+
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGm--i~PTsG~il~n~~~L~~~D 81 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGM--IEPTSGEILINDHPLHFGD 81 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcc--cCCCCceEEECCccccccc
Confidence 47889999987432 378999999999999999999999999999999984 5789999999999886655
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHH-HHh---cCCCChHHHHHHHHHhCCCChhhhhcccCC
Q psy11936 217 LTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEE-LKA---IGADSAEPRARRILAGLGFSRAMQDRATKN 292 (548)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~-l~~---~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~ 292 (548)
.......++ ++++. .+..++ ...++..+.+. +.. +......+++.+.|..+|+.++..+-++..
T Consensus 82 y~~R~k~IR-------MiFQD---pnts~N--PRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~ 149 (267)
T COG4167 82 YSFRSKRIR-------MIFQD---PNTSLN--PRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHM 149 (267)
T ss_pred hHhhhhhee-------eeecC---CccccC--hhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhh
Confidence 432222111 11111 011111 11122222211 111 112233456778899999988888999999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCeEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG----WKKTLLIVSHDQSFLDNVCNEIIHLDQQKLY 368 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~----~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~ 368 (548)
||-||||||+|||||+.+|.|+|.||..++||...+..|.++..+ .+.+.|.|+.++..+..++|.|++|+.|+++
T Consensus 150 la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vv 229 (267)
T COG4167 150 LAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVV 229 (267)
T ss_pred cCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCcee
Confidence 999999999999999999999999999999999998888887654 4789999999999999999999999999999
Q ss_pred EEcCCHHHHHHH
Q psy11936 369 YYKGNYSMFKKM 380 (548)
Q Consensus 369 ~~~g~y~~f~~~ 380 (548)
+|+.+-+.|...
T Consensus 230 E~G~t~~v~a~P 241 (267)
T COG4167 230 ERGSTADVLASP 241 (267)
T ss_pred ecCChhhhhcCC
Confidence 998777766543
No 347
>KOG0055|consensus
Probab=99.97 E-value=1.6e-31 Score=306.65 Aligned_cols=212 Identities=23% Similarity=0.345 Sum_probs=164.2
Q ss_pred ccEEEEeEEEEeCCc---eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 145 VDIKVENFSISAKGN---DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 145 ~~I~l~nls~~y~~~---~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
..|+++||+|+|+.+ ++|+|+||+|++|+.+||||||||||||.+.+|-. ++.|..|.|.++++++...+...++
T Consensus 986 G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeR--fYdp~~G~V~IDg~dik~lnl~~LR 1063 (1228)
T KOG0055|consen 986 GDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLER--FYDPDAGKVKIDGVDIKDLNLKWLR 1063 (1228)
T ss_pred eEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHH--hcCCCCCeEEECCcccccCCHHHHH
Confidence 369999999999765 59999999999999999999999999999999985 5789999999999998776665554
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHH---------HHhC--CCChhhhhccc
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRI---------LAGL--GFSRAMQDRAT 290 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~---------L~~l--gl~~~~~~~~~ 290 (548)
..+ +++.|.+ ..|+.+..+|+.. +. ..-.+..+.++ +..| |++. ....+.
T Consensus 1064 ~~i-------~lVsQEP----~LF~~TIrENI~Y------G~-~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT-~vGerG 1124 (1228)
T KOG0055|consen 1064 KQI-------GLVSQEP----VLFNGTIRENIAY------GS-EEVSEEEIIEAAKLANAHNFISSLPQGYDT-RVGERG 1124 (1228)
T ss_pred Hhc-------ceeccCc----hhhcccHHHHHhc------cC-CCCCHHHHHHHHHHhhhHHHHhcCcCcccC-ccCccc
Confidence 332 2232222 2234444444321 00 11122233333 3322 4443 334556
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy11936 291 KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLY 368 (548)
Q Consensus 291 ~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~ 368 (548)
.+||||||||+||||||+.+|+||||||.||+||.++...+.+.|.+. +.|.|+|.|.+..+.+ ||.|+||++|+|+
T Consensus 1125 ~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqn-aD~I~Vi~~G~Vv 1203 (1228)
T KOG0055|consen 1125 VQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQN-ADVIAVLKNGKVV 1203 (1228)
T ss_pred CcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhc-CCEEEEEECCEEE
Confidence 789999999999999999999999999999999999999999999875 5799999999999975 9999999999999
Q ss_pred EEcCCHHHHHH
Q psy11936 369 YYKGNYSMFKK 379 (548)
Q Consensus 369 ~~~g~y~~f~~ 379 (548)
+ .|+.++..+
T Consensus 1204 E-~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1204 E-QGTHDELLA 1213 (1228)
T ss_pred e-cccHHHHHh
Confidence 7 588887655
No 348
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.97 E-value=3.6e-31 Score=321.46 Aligned_cols=209 Identities=19% Similarity=0.322 Sum_probs=162.6
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+++|+. .++|+|+||+|++|+++||||+||||||||+++|+|. . +.+|+|.++|.++...+...++..
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl-~--~~~G~I~IdG~di~~i~~~~lR~~ 1293 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRL-L--STEGEIQIDGVSWNSVTLQTWRKA 1293 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhh-c--CCCcEEEECCEEcccCCHHHHHhc
Confidence 5999999999963 6799999999999999999999999999999999985 2 368999999998865544433322
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhh------hc----ccCCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQ------DR----ATKNF 293 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~------~~----~~~~L 293 (548)
+ .+++|. ...|..+..+|+.. . ....++.+.++|+.+++.+... +. ....|
T Consensus 1294 i-------s~IpQd----p~LF~GTIR~NLdp-------~-~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nL 1354 (1490)
T TIGR01271 1294 F-------GVIPQK----VFIFSGTFRKNLDP-------Y-EQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVL 1354 (1490)
T ss_pred e-------EEEeCC----CccCccCHHHHhCc-------c-cCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcC
Confidence 2 222221 22345566555521 1 1224567777888887753221 11 22479
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
|||||||++|||||+.+|+||||||||++||..+...+.+.|++. ++|||+|||+++.+.. ||+|++|++|+|+++
T Consensus 1355 SgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-~DrIlvL~~G~ivE~- 1432 (1490)
T TIGR01271 1355 SNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE-CQQFLVIEGSSVKQY- 1432 (1490)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEEe-
Confidence 999999999999999999999999999999999999999999875 5799999999999875 999999999999987
Q ss_pred CCHHHHH
Q psy11936 372 GNYSMFK 378 (548)
Q Consensus 372 g~y~~f~ 378 (548)
|++....
T Consensus 1433 g~p~~Ll 1439 (1490)
T TIGR01271 1433 DSIQKLL 1439 (1490)
T ss_pred CCHHHHH
Confidence 5555443
No 349
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=1.1e-30 Score=249.57 Aligned_cols=213 Identities=26% Similarity=0.277 Sum_probs=156.4
Q ss_pred EEEEeEEEEeCC-----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 147 IKVENFSISAKG-----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 147 I~l~nls~~y~~-----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
|.+.|+.+.|.. +++|+++||+|..|+++.|+|.|||||||||++|+|. ..|++|.|.++++++.........
T Consensus 2 i~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~--l~~t~G~I~Idg~dVtk~~~~~RA 79 (263)
T COG1101 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGD--LKPTSGQILIDGVDVTKKSVAKRA 79 (263)
T ss_pred cccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCc--cccCCceEEECceecccCCHHHHh
Confidence 566777777632 4699999999999999999999999999999999985 478899999999998654432222
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHh--cCC---CChHHHHHHHHHhC--CCChhhhhcccCCCC
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA--IGA---DSAEPRARRILAGL--GFSRAMQDRATKNFS 294 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~--~~~---~~~~~~~~~~L~~l--gl~~~~~~~~~~~LS 294 (548)
..+...+ |.+ .......++..+++.....+-.. ++. .......++-+..+ ||. ..++.++.-||
T Consensus 80 ~~larVf-------Qdp-~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLe-nrL~~~iglLS 150 (263)
T COG1101 80 NLLARVF-------QDP-LAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLE-NRLSDRIGLLS 150 (263)
T ss_pred hHHHHHh-------cch-hhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchh-hhhcChhhhcc
Confidence 2221111 111 11122345666665432221001 111 11223344556665 444 35688899999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH----HhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNY----LQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~----L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|||||-|+|+.|-+..|+||||||-|++|||.+...+++. +.+.+.|.+||||+++.+-.+.+|.|+|+.|+|+..
T Consensus 151 GGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 151 GGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred chHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEE
Confidence 9999999999999999999999999999999988777654 455678999999999999999999999999999863
No 350
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.5e-31 Score=263.84 Aligned_cols=206 Identities=26% Similarity=0.322 Sum_probs=155.0
Q ss_pred eEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHH
Q psy11936 151 NFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKR 230 (548)
Q Consensus 151 nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~ 230 (548)
|+.+.+|+. -=+++|+++.-.+++|.|+||||||||+|+|+|+ ..|..|.|..++..+....... .+....++
T Consensus 5 ~~~~~lG~~--~l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL--~rPdeG~I~lngr~L~Ds~k~i---~lp~~~Rr 77 (352)
T COG4148 5 NFRQRLGNF--ALDANFTLPARGITALFGPSGSGKTSLINMIAGL--TRPDEGRIELNGRVLVDAEKGI---FLPPEKRR 77 (352)
T ss_pred ehhhhcCce--EEEEeccCCCCceEEEecCCCCChhhHHHHHhcc--CCccccEEEECCEEeecccCCc---ccChhhhe
Confidence 344455543 2378999987689999999999999999999984 5899999999887664322110 01112233
Q ss_pred HHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCC-hHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHcc
Q psy11936 231 TELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADS-AEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYI 309 (548)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~-~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~ 309 (548)
.+|+++...+ ++..++..|+.. +.+. .......+...+|+. .+++++|.+|||||||||+|+|||+.
T Consensus 78 iGYVFQDARL---FpH~tVrgNL~Y--------G~~~~~~~~fd~iv~lLGI~-hLL~R~P~~LSGGEkQRVAIGRALLt 145 (352)
T COG4148 78 IGYVFQDARL---FPHYTVRGNLRY--------GMWKSMRAQFDQLVALLGIE-HLLDRYPGTLSGGEKQRVAIGRALLT 145 (352)
T ss_pred eeeEeecccc---ccceEEecchhh--------hhcccchHhHHHHHHHhCcH-HHHhhCCCccCcchhhHHHHHHHHhc
Confidence 4444443322 233344333321 1222 345677899999997 57899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHH
Q psy11936 310 EPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 310 ~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~ 375 (548)
.|++||||||.++||......++-||.++ +..|++|||.++++.++||+|++|++|++..++..-+
T Consensus 146 ~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~ 215 (352)
T COG4148 146 APELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEE 215 (352)
T ss_pred CCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHH
Confidence 99999999999999999888888877654 6799999999999999999999999999998854433
No 351
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=2.4e-30 Score=252.67 Aligned_cols=189 Identities=23% Similarity=0.290 Sum_probs=144.2
Q ss_pred ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHH
Q psy11936 159 NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECA 238 (548)
Q Consensus 159 ~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 238 (548)
..+|+||||+|++||++||||+||||||||||+|+| +..|++|.|...+.-.......
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaG--i~~Pt~G~v~v~G~v~~li~lg-------------------- 97 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAG--IYKPTSGKVKVTGKVAPLIELG-------------------- 97 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhC--ccCCCCceEEEcceEehhhhcc--------------------
Confidence 468999999999999999999999999999999998 4678899888766532110000
Q ss_pred HHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q psy11936 239 KLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDE 318 (548)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDE 318 (548)
.......+..+++.. ...+.++...+.+.+++++.+.-.|. +..+.|+.++|-||+.|+++|-|...+|+||||||
T Consensus 98 --~Gf~pelTGreNi~l-~~~~~G~~~~ei~~~~~eIieFaELG-~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDE 173 (249)
T COG1134 98 --AGFDPELTGRENIYL-RGLILGLTRKEIDEKVDEIIEFAELG-DFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDE 173 (249)
T ss_pred --cCCCcccchHHHHHH-HHHHhCccHHHHHHHHHHHHHHHHHH-HHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEeh
Confidence 000112233333321 11222233344566777777777775 47899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCC
Q psy11936 319 PTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 319 PTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~ 373 (548)
-.+-.|+.-++.-.+.+.++ +.|||+||||+.++.++||++++|++|++..++..
T Consensus 174 vlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~ 231 (249)
T COG1134 174 VLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSP 231 (249)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCH
Confidence 99999998766655555544 48999999999999999999999999999987544
No 352
>KOG0062|consensus
Probab=99.97 E-value=3.9e-30 Score=271.05 Aligned_cols=210 Identities=24% Similarity=0.366 Sum_probs=165.7
Q ss_pred cccEEEEeEEEEeCCc--eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 144 AVDIKVENFSISAKGN--DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 144 ~~~I~l~nls~~y~~~--~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
...|++.+|+|.|... .++.++++.++.-++++++|+||+||||+++++.|.+ .|..|.+...+.--.
T Consensus 360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l--~~~rgi~~~~~r~ri-------- 429 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDL--TPTRGIVGRHPRLRI-------- 429 (582)
T ss_pred CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccC--Ccccceeeeccccee--------
Confidence 3579999999999654 4899999999999999999999999999999999853 445554443322100
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
.++.+...- .++.. ....+.+.....-..++.++.-|..||++.++..+++.+||||||-||
T Consensus 430 ----------~~f~Qhhvd---~l~~~-----v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrv 491 (582)
T KOG0062|consen 430 ----------KYFAQHHVD---FLDKN-----VNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRV 491 (582)
T ss_pred ----------cchhHhhhh---HHHHH-----hHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHH
Confidence 000000000 00000 011112222222236778899999999999888889999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHHHH
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMY 381 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~~~ 381 (548)
+||.+...+|.+|+|||||||||.++...|...|+.|++.||+||||.+|+..+|+.+|+.++|++..+.|..+.|.+..
T Consensus 492 afA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~~~yKkl~ 571 (582)
T KOG0062|consen 492 AFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGIDKYKKLL 571 (582)
T ss_pred HHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhhcCceeEEEcCCcEEeeeccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998886543
No 353
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.5e-30 Score=242.78 Aligned_cols=190 Identities=23% Similarity=0.314 Sum_probs=146.8
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+++.+||+...+.+.+|.++||+|.+||.+-|.||||||||||||+|+|+ ..|..|.|.+.+..+.....+ +..
T Consensus 2 ~L~a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGL--l~p~~G~v~~~~~~i~~~~~~-~~~--- 75 (209)
T COG4133 2 MLEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGL--LRPDAGEVYWQGEPIQNVRES-YHQ--- 75 (209)
T ss_pred cchhhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcc--cCCCCCeEEecCCCCccchhh-HHH---
Confidence 46788999999999999999999999999999999999999999999985 578999999987765432110 100
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
..-++.. ....-..+++.+++.... .+ ........+.++|+.+||.. ..+.++.+||-|||+||+|||
T Consensus 76 ----~l~yLGH---~~giK~eLTa~ENL~F~~-~~---~~~~~~~~i~~Al~~vgL~g-~~dlp~~~LSAGQqRRvAlAr 143 (209)
T COG4133 76 ----ALLYLGH---QPGIKTELTALENLHFWQ-RF---HGSGNAATIWEALAQVGLAG-LEDLPVGQLSAGQQRRVALAR 143 (209)
T ss_pred ----HHHHhhc---cccccchhhHHHHHHHHH-HH---hCCCchhhHHHHHHHcCccc-ccccchhhcchhHHHHHHHHH
Confidence 0011111 111112456666664322 22 22234567888999999984 679999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLD 353 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~ 353 (548)
.+++.+++.||||||++||..++..|..++... ++.||++||..-.+.
T Consensus 144 L~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 144 LWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence 999999999999999999999999999988753 678999999876553
No 354
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.97 E-value=3.4e-30 Score=310.84 Aligned_cols=210 Identities=20% Similarity=0.249 Sum_probs=159.0
Q ss_pred cEEEEeEEEEeC----CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCC-CCCCeEEEEeceeeccCchhHH
Q psy11936 146 DIKVENFSISAK----GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK-VPPNIDILYCEQEVVADDLTAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~----~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~-~~~~g~I~~~~q~i~~~~~~~~ 220 (548)
.|+++||++.|+ .+.+|+||||+|.+|+++||+|||||||||||++|+|.... .+.+|+|.++|+++.. .+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~----~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS----SF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh----hh
Confidence 589999999995 45799999999999999999999999999999999986311 2567999998876521 11
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcC---CCChHHHHHHHHHhCCCChhhhhcccC----CC
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG---ADSAEPRARRILAGLGFSRAMQDRATK----NF 293 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~---~~~~~~~~~~~L~~lgl~~~~~~~~~~----~L 293 (548)
. +..+++.+. ....+..++.+++.... .+..-. ......++.++++.+|+.+ ..++.++ .|
T Consensus 835 ~-------~~i~yv~Q~---~~~~~~~Tv~E~L~~~a-~l~~~~~~~~~~~~~~v~~~l~~l~L~~-~~d~~v~~~~~~L 902 (1394)
T TIGR00956 835 Q-------RSIGYVQQQ---DLHLPTSTVRESLRFSA-YLRQPKSVSKSEKMEYVEEVIKLLEMES-YADAVVGVPGEGL 902 (1394)
T ss_pred h-------cceeeeccc---ccCCCCCCHHHHHHHHH-HhCCCCCCCHHHHHHHHHHHHHHcCChh-hCCCeeCCCCCCC
Confidence 1 111222221 11233456666654211 121100 1122356789999999974 5677776 79
Q ss_pred CHHHHHHHHHHHHHccCCC-EEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHH-HHhhcCEEEEEeCC-EE
Q psy11936 294 SGGWRMRVSLARALYIEPT-LLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSF-LDNVCNEIIHLDQQ-KL 367 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~-lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~-l~~vadrIi~L~~G-~i 367 (548)
||||||||+||++|+.+|+ ||||||||+|||..+...+.++|+++ +.|||++||++.. +...||++++|++| ++
T Consensus 903 SgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~i 982 (1394)
T TIGR00956 903 NVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQT 982 (1394)
T ss_pred CHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEE
Confidence 9999999999999999997 99999999999999999999998765 5799999999986 34679999999997 98
Q ss_pred EEEc
Q psy11936 368 YYYK 371 (548)
Q Consensus 368 ~~~~ 371 (548)
++++
T Consensus 983 v~~G 986 (1394)
T TIGR00956 983 VYFG 986 (1394)
T ss_pred EEEC
Confidence 8654
No 355
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.97 E-value=5.7e-30 Score=287.83 Aligned_cols=205 Identities=23% Similarity=0.305 Sum_probs=153.2
Q ss_pred CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCC---CCeEEEEeceeeccCchhHHHHHHHhhHHHHHH
Q psy11936 157 KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVP---PNIDILYCEQEVVADDLTAVESVLKADVKRTEL 233 (548)
Q Consensus 157 ~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~---~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l 233 (548)
+++.+|+|+|++|++|++++|+|||||||||||++|+|.. .+ .+|+|.+++..+.. ..+. +...+
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~--~~~~~~~G~i~~~g~~~~~---~~~~-------~~i~y 103 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRS--PKGVKGSGSVLLNGMPIDA---KEMR-------AISAY 103 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCC--CCCCcceeEEEECCEECCH---HHHh-------hhcee
Confidence 3567999999999999999999999999999999999863 23 36889998876531 1111 11122
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHHhc---CCCChHHHHHHHHHhCCCChhhhhcccC------CCCHHHHHHHHHH
Q psy11936 234 LAECAKLEAADFSSEQQEQLKEIYEELKAI---GADSAEPRARRILAGLGFSRAMQDRATK------NFSGGWRMRVSLA 304 (548)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~---~~~~~~~~~~~~L~~lgl~~~~~~~~~~------~LSGGqkqRvaLA 304 (548)
..+. .......++.+++... ..+..- .......++.++++.+|+.+ ..+..++ .|||||||||+||
T Consensus 104 v~Q~---~~~~~~lTV~e~l~f~-~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~~LSgGqrkRvsia 178 (617)
T TIGR00955 104 VQQD---DLFIPTLTVREHLMFQ-AHLRMPRRVTKKEKRERVDEVLQALGLRK-CANTRIGVPGRVKGLSGGERKRLAFA 178 (617)
T ss_pred eccc---cccCccCcHHHHHHHH-HhcCCCCCCCHHHHHHHHHHHHHHcCchh-cCcCccCCCCCCCCcCcchhhHHHHH
Confidence 2221 1122345666665321 111110 11123456889999999974 4567665 5999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHH-HHHhhcCEEEEEeCCEEEEEcCCHHHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQS-FLDNVCNEIIHLDQQKLYYYKGNYSMFKK 379 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~-~l~~vadrIi~L~~G~i~~~~g~y~~f~~ 379 (548)
++|+.+|++|||||||++||+.+...+.+.|+++ +.|||+++|++. .+..+||+|++|++|++++ .|+.++...
T Consensus 179 ~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~-~G~~~~~~~ 256 (617)
T TIGR00955 179 SELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAY-LGSPDQAVP 256 (617)
T ss_pred HHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEE-ECCHHHHHH
Confidence 9999999999999999999999999999888775 579999999985 6778999999999999985 577766543
No 356
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=9.7e-30 Score=234.92 Aligned_cols=211 Identities=25% Similarity=0.347 Sum_probs=155.1
Q ss_pred cEEEEeEEEEe-----CC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccC-ch
Q psy11936 146 DIKVENFSISA-----KG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVAD-DL 217 (548)
Q Consensus 146 ~I~l~nls~~y-----~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~-~~ 217 (548)
.|.++||+++| +| -++|+++||+++.||+++|-||||+|||||||+|.|. +.|++|.|.+..+.-..+ -.
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaN--Y~~d~G~I~v~H~g~~vdl~~ 81 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYAN--YLPDEGQILVRHEGEWVDLVT 81 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhc--cCCCCceEEEEeCcchhhhhc
Confidence 47889999988 23 2589999999999999999999999999999999985 567888887654322111 00
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHh--cCCCChHHHHHHHHHhCCCChhhhhcccCCCCH
Q psy11936 218 TAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA--IGADSAEPRARRILAGLGFSRAMQDRATKNFSG 295 (548)
Q Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~--~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 295 (548)
..-..++....+-.++..+.... .+.....+.. .+-+-. .....+..++..+|.++++++.++.-.|.++||
T Consensus 82 a~pr~vl~vRr~TiGyVSQFLRv---iPRV~aLdVv---aePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSG 155 (235)
T COG4778 82 AEPREVLEVRRTTIGYVSQFLRV---IPRVSALDVV---AEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSG 155 (235)
T ss_pred cChHHHHHHHHhhhHHHHHHHHh---ccCcchHHHH---HhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCC
Confidence 00111221111223333332211 1222222222 222222 233456778899999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeC
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQ 364 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~ 364 (548)
||+|||.|||.++.+-+||||||||++||...+..+.++|.+- +.++|=|-||.+.=+.+|||++.|..
T Consensus 156 GEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 156 GEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred chheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 9999999999999999999999999999999999988888654 56899999999999999999998853
No 357
>KOG0066|consensus
Probab=99.97 E-value=1.5e-29 Score=261.07 Aligned_cols=201 Identities=25% Similarity=0.382 Sum_probs=160.5
Q ss_pred cccEEEEeEEEEe-CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCe--------EEEEeceeecc
Q psy11936 144 AVDIKVENFSISA-KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI--------DILYCEQEVVA 214 (548)
Q Consensus 144 ~~~I~l~nls~~y-~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g--------~I~~~~q~i~~ 214 (548)
...|-+.+|+|.| +.+++|.+++|-|.--.+||||||||.||||||++|.|.+ .|..| .|++++|....
T Consensus 584 PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl--~P~~GE~RKnhrL~iG~FdQh~~E 661 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKL--DPNDGELRKNHRLRIGWFDQHANE 661 (807)
T ss_pred CCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCC--CCCcchhhccceeeeechhhhhHH
Confidence 3568899999999 5578999999999999999999999999999999999853 45444 34443332100
Q ss_pred CchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCC
Q psy11936 215 DDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFS 294 (548)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 294 (548)
.+....+..+++.. . ..-....++..|..|||..+...-.+..||
T Consensus 662 ---------------------------~L~~Eetp~EyLqr----~----FNlpyq~ARK~LG~fGL~sHAHTikikdLS 706 (807)
T KOG0066|consen 662 ---------------------------ALNGEETPVEYLQR----K----FNLPYQEARKQLGTFGLASHAHTIKIKDLS 706 (807)
T ss_pred ---------------------------hhccccCHHHHHHH----h----cCCChHHHHHHhhhhhhhhccceEeeeecC
Confidence 00001111111111 1 112345678899999998665566788999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
|||+.||+||-.-+..|||||||||||+||++++..|.+.|..|++.|||||||-.++.+....+||+++..|-...|.|
T Consensus 707 GGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdF 786 (807)
T KOG0066|consen 707 GGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDF 786 (807)
T ss_pred CcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEecccceeeecCceEEEEccCChhhccccH
Confidence 99999999999999999999999999999999999999999999999999999999998887789999999999999999
Q ss_pred HHHHHHH
Q psy11936 375 SMFKKMY 381 (548)
Q Consensus 375 ~~f~~~~ 381 (548)
++|....
T Consensus 787 eDYkkEV 793 (807)
T KOG0066|consen 787 EDYKKEV 793 (807)
T ss_pred HHHHHHH
Confidence 9997543
No 358
>PLN03140 ABC transporter G family member; Provisional
Probab=99.97 E-value=1.1e-29 Score=305.98 Aligned_cols=211 Identities=18% Similarity=0.212 Sum_probs=155.4
Q ss_pred cEEEEeEEEEeC-------------CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee
Q psy11936 146 DIKVENFSISAK-------------GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV 212 (548)
Q Consensus 146 ~I~l~nls~~y~-------------~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i 212 (548)
.+..+||++... .+.+|+|||++|.+|++++|+|||||||||||++|+|....-+.+|.|.+++.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 588999998863 3479999999999999999999999999999999999631113468888877653
Q ss_pred ccCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC----CChHHHHHHHHHhCCCChhhhhc
Q psy11936 213 VADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA----DSAEPRARRILAGLGFSRAMQDR 288 (548)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~----~~~~~~~~~~L~~lgl~~~~~~~ 288 (548)
.. ..... ..+++.+. .......++.+++.... .+. ... .....++.++++.+|+.+ ..+.
T Consensus 947 ~~---~~~~~-------~igyv~Q~---d~~~~~lTV~E~L~~~a-~lr-~~~~~~~~~~~~~v~~vl~~lgL~~-~~~~ 1010 (1470)
T PLN03140 947 KQ---ETFAR-------ISGYCEQN---DIHSPQVTVRESLIYSA-FLR-LPKEVSKEEKMMFVDEVMELVELDN-LKDA 1010 (1470)
T ss_pred Ch---HHhhh-------heEEEccc---cccCCCCcHHHHHHHHH-HhC-CCCCCCHHHHHHHHHHHHHHCCChh-HhCC
Confidence 21 00100 11122221 11223456666653211 111 111 112345789999999974 4566
Q ss_pred cc-----CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHH-HHHhhcCEE
Q psy11936 289 AT-----KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQS-FLDNVCNEI 359 (548)
Q Consensus 289 ~~-----~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~-~l~~vadrI 359 (548)
.+ ..|||||||||+||++|+.+|+||||||||+|||+.+...+.++|+++ +.|||++||+.+ .+..+||++
T Consensus 1011 ~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~v 1090 (1470)
T PLN03140 1011 IVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1090 (1470)
T ss_pred ccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEE
Confidence 65 589999999999999999999999999999999999999999988775 679999999998 466789999
Q ss_pred EEEeC-CEEEEEcCC
Q psy11936 360 IHLDQ-QKLYYYKGN 373 (548)
Q Consensus 360 i~L~~-G~i~~~~g~ 373 (548)
++|++ |+++++ |+
T Consensus 1091 llL~~gG~~v~~-G~ 1104 (1470)
T PLN03140 1091 LLMKRGGQVIYS-GP 1104 (1470)
T ss_pred EEEcCCCEEEEE-CC
Confidence 99996 888755 44
No 359
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.97 E-value=9.3e-30 Score=268.10 Aligned_cols=205 Identities=23% Similarity=0.398 Sum_probs=153.5
Q ss_pred ccEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 145 VDIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 145 ~~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
..|.+++|++.-.+ +++++++||++.+|+.+|||||||||||||.|+|.|. ..|.+|.|.+++-++...+...+-.
T Consensus 333 g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~--w~p~~G~VRLDga~l~qWd~e~lG~ 410 (580)
T COG4618 333 GALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGI--WPPTSGSVRLDGADLRQWDREQLGR 410 (580)
T ss_pred ceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcc--cccCCCcEEecchhhhcCCHHHhcc
Confidence 36999999987643 5799999999999999999999999999999999984 5688899998887776555443332
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHH---------HHHHHHhC--CCChhhhhcccC
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPR---------ARRILAGL--GFSRAMQDRATK 291 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~---------~~~~L~~l--gl~~~~~~~~~~ 291 (548)
. .+|++|.- ..|..++.+|+. .++.+...+. +.++.-.| |++. ....-..
T Consensus 411 h-------iGYLPQdV----eLF~GTIaeNIa-------Rf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT-~iG~~G~ 471 (580)
T COG4618 411 H-------IGYLPQDV----ELFDGTIAENIA-------RFGEEADPEKVIEAARLAGVHELILRLPQGYDT-RIGEGGA 471 (580)
T ss_pred c-------cCcCcccc----eecCCcHHHHHH-------hccccCCHHHHHHHHHHcChHHHHHhCcCCccC-ccCCCCC
Confidence 2 33333322 124445544442 2222211221 23333333 4432 2233456
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCeEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy11936 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG---WKKTLLIVSHDQSFLDNVCNEIIHLDQQKLY 368 (548)
Q Consensus 292 ~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~---~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~ 368 (548)
.||||||||++|||||..+|.+++||||-++||.+....|.+.|.. .++|+|+|||....+. .||+|++|++|++.
T Consensus 472 ~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~-~~Dkilvl~~G~~~ 550 (580)
T COG4618 472 TLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALA-SVDKILVLQDGRIA 550 (580)
T ss_pred CCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHh-hcceeeeecCChHH
Confidence 8999999999999999999999999999999999999998888765 4689999999999885 59999999999999
Q ss_pred EEc
Q psy11936 369 YYK 371 (548)
Q Consensus 369 ~~~ 371 (548)
.|+
T Consensus 551 ~FG 553 (580)
T COG4618 551 AFG 553 (580)
T ss_pred hcC
Confidence 884
No 360
>PLN03232 ABC transporter C family member; Provisional
Probab=99.96 E-value=4.1e-29 Score=303.91 Aligned_cols=191 Identities=24% Similarity=0.333 Sum_probs=139.7
Q ss_pred cEEEEeEEEEeCC---ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCe-------EEEEeceeeccC
Q psy11936 146 DIKVENFSISAKG---NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI-------DILYCEQEVVAD 215 (548)
Q Consensus 146 ~I~l~nls~~y~~---~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g-------~I~~~~q~i~~~ 215 (548)
.|+++|++|+|++ .++|+|+||+|++|++++|+||+|||||||+++|+|.. .|.+| .|.|.+|+....
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~--~~~~G~i~~~~~~Iayv~Q~p~Lf 691 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGEL--SHAETSSVVIRGSVAYVPQVSWIF 691 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--cccCCCEEEecCcEEEEcCccccc
Confidence 5999999999964 57999999999999999999999999999999999853 34333 466666655333
Q ss_pred chhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh----------h
Q psy11936 216 DLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA----------M 285 (548)
Q Consensus 216 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~ 285 (548)
+.+ ..+|+. ++....+++..++++..++.++ .
T Consensus 692 ~gT------------------------------IreNI~--------fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~ 733 (1495)
T PLN03232 692 NAT------------------------------VRENIL--------FGSDFESERYWRAIDVTALQHDLDLLPGRDLTE 733 (1495)
T ss_pred ccc------------------------------HHHHhh--------cCCccCHHHHHHHHHHhCCHHHHHhCCCCCCce
Confidence 222 111111 0001112233333333333211 1
Q ss_pred hhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH-HHhh--cCCeEEEEecCHHHHHhhcCEEEEE
Q psy11936 286 QDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDN-YLQG--WKKTLLIVSHDQSFLDNVCNEIIHL 362 (548)
Q Consensus 286 ~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~-~L~~--~~~TvIiVSHD~~~l~~vadrIi~L 362 (548)
......+|||||||||+|||||+++|+|||||||||+||..+...+.+ .+.. .++|+|+|||++.++. .||+|++|
T Consensus 734 IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~-~aD~Ii~L 812 (1495)
T PLN03232 734 IGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLP-LMDRIILV 812 (1495)
T ss_pred ecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHH-hCCEEEEE
Confidence 223355799999999999999999999999999999999998876654 4544 2579999999999885 59999999
Q ss_pred eCCEEEEEcCCHHHHH
Q psy11936 363 DQQKLYYYKGNYSMFK 378 (548)
Q Consensus 363 ~~G~i~~~~g~y~~f~ 378 (548)
++|+++.. |+|++..
T Consensus 813 ~~G~i~~~-Gt~~eL~ 827 (1495)
T PLN03232 813 SEGMIKEE-GTFAELS 827 (1495)
T ss_pred eCCEEEEe-cCHHHHH
Confidence 99999864 7776653
No 361
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=4.6e-30 Score=232.75 Aligned_cols=201 Identities=25% Similarity=0.309 Sum_probs=148.9
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCC-CCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDL-KVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~-~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
++.++||+.+.++..+|-++||+|.+||++.|+|||||||||||..+.|..- ...-+|++.++++.+......
T Consensus 2 ~l~l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~------ 75 (213)
T COG4136 2 MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA------ 75 (213)
T ss_pred ceeeeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh------
Confidence 5789999999999999999999999999999999999999999999998532 234468888888876432211
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
.+..+++++...+ +...++.+++... --..+.....+..+...|++.|++. ..++.|.+||||||-||+|-
T Consensus 76 ---qRq~GiLFQD~lL---FphlsVg~Nl~fA--lp~~~KG~aRr~~a~aAL~~~gL~g-~f~~dP~tlSGGQrARvaL~ 146 (213)
T COG4136 76 ---QRQIGILFQDALL---FPHLSVGQNLLFA--LPATLKGNARRNAANAALERSGLDG-AFHQDPATLSGGQRARVALL 146 (213)
T ss_pred ---hhheeeeeccccc---ccccccccceEEe--cCcccccHHHHhhHHHHHHHhccch-hhhcChhhcCcchHHHHHHH
Confidence 1122222222111 1122222222100 0011122233455778899999985 57889999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHH----HHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEE
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLN----AVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHL 362 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~----s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L 362 (548)
|+|+..|++||||||+|.||.. .++|+..-++..+..+|+||||...+. ...||+.|
T Consensus 147 R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp-agsrVie~ 207 (213)
T COG4136 147 RALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP-AGSRVIEM 207 (213)
T ss_pred HHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC-CCCeeeee
Confidence 9999999999999999999985 567888888888899999999999886 56777776
No 362
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.96 E-value=4.9e-29 Score=303.64 Aligned_cols=198 Identities=24% Similarity=0.318 Sum_probs=139.0
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEE------EeceeeccCch
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL------YCEQEVVADDL 217 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~------~~~q~i~~~~~ 217 (548)
.|+++|++++|++ .++|+|+||+|++|++++|+|||||||||||++|+|. ..|.+|.|. |..|+....+.
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~--~~~~~G~i~~~g~i~yv~Q~~~l~~~ 713 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE--MDKVEGHVHMKGSVAYVPQQAWIQND 713 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CccCCcEEEECCEEEEEcCCccccCC
Confidence 5999999999974 5799999999999999999999999999999999985 345666654 44443322111
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhC--CCChhhhhcccCCCCH
Q psy11936 218 TAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGL--GFSRAMQDRATKNFSG 295 (548)
Q Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~l--gl~~~~~~~~~~~LSG 295 (548)
+..+.+.. .. .++. +.+..+.... .....+..+ |.. ...+....+|||
T Consensus 714 Ti~eNI~~---------------g~-~~~~---~~~~~~~~~~----------~l~~~l~~~~~g~~-t~ig~~g~~LSG 763 (1522)
T TIGR00957 714 SLRENILF---------------GK-ALNE---KYYQQVLEAC----------ALLPDLEILPSGDR-TEIGEKGVNLSG 763 (1522)
T ss_pred cHHHHhhc---------------CC-ccCH---HHHHHHHHHh----------CCHHHHHhcCCCCC-ceecCCCCCCCH
Confidence 11110000 00 0000 0000000000 000112222 221 123556789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh-----cCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG-----WKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~-----~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
||||||+|||||+.+|++|||||||++||+.+..++.+.+.. .+.|+|+|||++.++.. ||+|++|++|+++..
T Consensus 764 GQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~~G~i~~~ 842 (1522)
T TIGR00957 764 GQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMSGGKISEM 842 (1522)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEecCCeEEee
Confidence 999999999999999999999999999999999999888753 24799999999999976 999999999999864
Q ss_pred cCCHHHH
Q psy11936 371 KGNYSMF 377 (548)
Q Consensus 371 ~g~y~~f 377 (548)
|++++.
T Consensus 843 -g~~~~l 848 (1522)
T TIGR00957 843 -GSYQEL 848 (1522)
T ss_pred -CCHHHH
Confidence 666554
No 363
>PLN03130 ABC transporter C family member; Provisional
Probab=99.96 E-value=6.1e-29 Score=303.07 Aligned_cols=191 Identities=24% Similarity=0.332 Sum_probs=140.1
Q ss_pred cEEEEeEEEEeCC---ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCC-e------EEEEeceeeccC
Q psy11936 146 DIKVENFSISAKG---NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN-I------DILYCEQEVVAD 215 (548)
Q Consensus 146 ~I~l~nls~~y~~---~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~-g------~I~~~~q~i~~~ 215 (548)
.|+++|++|+|+. .++|+|+||+|++|++++||||+|||||||+++|+|.. .|.+ | .|.|.+|+....
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~--~~~~GG~I~l~~~Iayv~Q~p~Lf 691 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGEL--PPRSDASVVIRGTVAYVPQVSWIF 691 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhh--ccCCCceEEEcCeEEEEcCccccC
Confidence 5999999999964 57999999999999999999999999999999999853 3444 4 455666654332
Q ss_pred chhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh----------h
Q psy11936 216 DLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA----------M 285 (548)
Q Consensus 216 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~ 285 (548)
+.+ ..+|+. ++....+++..++++..++..+ .
T Consensus 692 ngT------------------------------IreNI~--------fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~ 733 (1622)
T PLN03130 692 NAT------------------------------VRDNIL--------FGSPFDPERYERAIDVTALQHDLDLLPGGDLTE 733 (1622)
T ss_pred CCC------------------------------HHHHHh--------CCCcccHHHHHHHHHHhCcHHHHHhCCCccccc
Confidence 222 222211 0011112233333333333221 2
Q ss_pred hhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH-HHHhhc--CCeEEEEecCHHHHHhhcCEEEEE
Q psy11936 286 QDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLD-NYLQGW--KKTLLIVSHDQSFLDNVCNEIIHL 362 (548)
Q Consensus 286 ~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~-~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L 362 (548)
......+|||||||||+|||||+.+|+|||||||||+||..+...+. +.+... ++|+|+|||++.++. .||+|++|
T Consensus 734 IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~-~aD~Ii~L 812 (1622)
T PLN03130 734 IGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLS-QVDRIILV 812 (1622)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHH-hCCEEEEE
Confidence 23345679999999999999999999999999999999999877664 455542 579999999999886 59999999
Q ss_pred eCCEEEEEcCCHHHHH
Q psy11936 363 DQQKLYYYKGNYSMFK 378 (548)
Q Consensus 363 ~~G~i~~~~g~y~~f~ 378 (548)
++|++.. .|+|++..
T Consensus 813 ~~G~i~e-~Gt~~eL~ 827 (1622)
T PLN03130 813 HEGMIKE-EGTYEELS 827 (1622)
T ss_pred eCCEEEE-eCCHHHHH
Confidence 9999986 47777653
No 364
>KOG0056|consensus
Probab=99.96 E-value=1.5e-29 Score=263.93 Aligned_cols=214 Identities=22% Similarity=0.341 Sum_probs=152.8
Q ss_pred ccEEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 145 VDIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 145 ~~I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.-|+++||+|.|+ ++++|+||||++.+|..++||||||+||||+||+|.. +....+|.|.+++|++..-....++..
T Consensus 536 G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfR--ffdv~sGsI~iDgqdIrnvt~~SLRs~ 613 (790)
T KOG0056|consen 536 GKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFR--FFDVNSGSITIDGQDIRNVTQSSLRSS 613 (790)
T ss_pred CeEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHH--HhhccCceEEEcCchHHHHHHHHHHHh
Confidence 3699999999995 6899999999999999999999999999999999986 356778999999998854333333322
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCC--h--HHHHHHHHH-hCCCChh---hhhcccCCCCH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADS--A--EPRARRILA-GLGFSRA---MQDRATKNFSG 295 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~--~--~~~~~~~L~-~lgl~~~---~~~~~~~~LSG 295 (548)
+ +++++...+ |+.+...++. +...+... . ..++..+-+ -++|++. ....+.-.|||
T Consensus 614 I-------GVVPQDtvL----FNdTI~yNIr-----yak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSG 677 (790)
T KOG0056|consen 614 I-------GVVPQDTVL----FNDTILYNIR-----YAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSG 677 (790)
T ss_pred c-------CcccCccee----ecceeeehee-----ecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCC
Confidence 2 222222211 1111111110 00000000 0 011111111 2355432 22334456999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCC
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~ 373 (548)
||||||||||+++..|.++||||.||+||..+...+...|.+. +.|-|+|.|.++.+-+ ||.|+++++|.|++ .|+
T Consensus 678 GEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivn-AD~ILvi~~G~IvE-rG~ 755 (790)
T KOG0056|consen 678 GEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVN-ADLILVISNGRIVE-RGR 755 (790)
T ss_pred cchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheec-ccEEEEEeCCeEee-cCc
Confidence 9999999999999999999999999999999999999988876 5799999999999875 99999999999997 577
Q ss_pred HHHHH
Q psy11936 374 YSMFK 378 (548)
Q Consensus 374 y~~f~ 378 (548)
.++..
T Consensus 756 HeeLl 760 (790)
T KOG0056|consen 756 HEELL 760 (790)
T ss_pred HHHHH
Confidence 66543
No 365
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.96 E-value=4.9e-28 Score=294.21 Aligned_cols=187 Identities=24% Similarity=0.365 Sum_probs=128.1
Q ss_pred ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEE------EeceeeccCchhHHHHHHHhhHHHHH
Q psy11936 159 NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL------YCEQEVVADDLTAVESVLKADVKRTE 232 (548)
Q Consensus 159 ~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~------~~~q~i~~~~~~~~~~~~~~~~~~~~ 232 (548)
+++|+|+||+|++|++++|+|||||||||||++|+|. ..|.+|.|. |..|+....+.+..+.+...
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~--~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g------ 510 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGE--LEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFG------ 510 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEEEEEeCCCccCCccHHHHHHhc------
Confidence 4689999999999999999999999999999999985 345666554 44444322221111111000
Q ss_pred HHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCC-hhhhhcccCCCCHHHHHHHHHHHHHccCC
Q psy11936 233 LLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFS-RAMQDRATKNFSGGWRMRVSLARALYIEP 311 (548)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~-~~~~~~~~~~LSGGqkqRvaLAraL~~~P 311 (548)
. .+.. +.+..+... ..+...+..+... .........+|||||||||+|||||+.+|
T Consensus 511 ---------~-~~~~---~~~~~~~~~----------~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~ 567 (1490)
T TIGR01271 511 ---------L-SYDE---YRYTSVIKA----------CQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDA 567 (1490)
T ss_pred ---------c-ccch---HHHHHHHHH----------HhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCC
Confidence 0 0000 000000000 0112223333211 11234567899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHH-Hhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHH
Q psy11936 312 TLLLLDEPTNHLDLNAVIWLDNY-LQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378 (548)
Q Consensus 312 ~lLLLDEPTn~LD~~s~~~L~~~-L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~ 378 (548)
++|||||||++||+.+...+.+. +..+ +.|+|+|||++.++.. ||+|++|++|+++.. |++++..
T Consensus 568 ~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~-ad~ii~l~~g~i~~~-g~~~~l~ 635 (1490)
T TIGR01271 568 DLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKK-ADKILLLHEGVCYFY-GTFSELQ 635 (1490)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHh-CCEEEEEECCEEEEE-cCHHHHH
Confidence 99999999999999999988874 4443 5799999999999875 999999999999864 6766653
No 366
>PTZ00243 ABC transporter; Provisional
Probab=99.96 E-value=1.2e-27 Score=291.23 Aligned_cols=193 Identities=23% Similarity=0.327 Sum_probs=136.1
Q ss_pred EEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEE------EEeceeeccCchhHHHHHHH
Q psy11936 152 FSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDI------LYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 152 ls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I------~~~~q~i~~~~~~~~~~~~~ 225 (548)
-.+.++++.+|+|+||+|.+|++++|+|||||||||||++|+|. ..|.+|.| +|..|+....+.+..+.+..
T Consensus 666 ~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~--~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~ 743 (1560)
T PTZ00243 666 DFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQ--FEISEGRVWAERSIAYVPQQAWIMNATVRGNILF 743 (1560)
T ss_pred cccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHc
Confidence 44566778899999999999999999999999999999999985 34556654 45555432222221111100
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhC--CCChhhhhcccCCCCHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGL--GFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~l--gl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
......+.+..... ...+...++.+ |+.. ..+..+.+|||||||||+|
T Consensus 744 -------------------~~~~~~~~~~~~~~----------~~~l~~~l~~l~~g~~t-~i~~~g~~LSGGQkqRvaL 793 (1560)
T PTZ00243 744 -------------------FDEEDAARLADAVR----------VSQLEADLAQLGGGLET-EIGEKGVNLSGGQKARVSL 793 (1560)
T ss_pred -------------------CChhhHHHHHHHHH----------HhhhHHHHHHhhccchH-HhcCCCCCCCHHHHHHHHH
Confidence 00000000000000 01123345555 5543 4567789999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHH-Hh-hc-CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNY-LQ-GW-KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~-L~-~~-~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~ 378 (548)
||||+.+|+||||||||++||+.+..++.+. +. .. +.|+|+||||++++. .||+|++|++|++.. .|+|+++.
T Consensus 794 ARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~-~ad~ii~l~~G~i~~-~G~~~~l~ 869 (1560)
T PTZ00243 794 ARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVP-RADYVVALGDGRVEF-SGSSADFM 869 (1560)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEE-ecCHHHHH
Confidence 9999999999999999999999987777653 22 22 579999999999995 699999999999975 58887764
No 367
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.2e-28 Score=250.72 Aligned_cols=218 Identities=21% Similarity=0.295 Sum_probs=153.5
Q ss_pred cEEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.+.+.+|+|.|+ .+++|+++||++..|+.++|||++|+||||++++|-. +..+.+|.|.+++|++.......++..+
T Consensus 262 ~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfR--FyD~~sG~I~id~qdir~vtq~slR~aI 339 (497)
T COG5265 262 AVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFR--FYDVNSGSITIDGQDIRDVTQQSLRRAI 339 (497)
T ss_pred eEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHH--HhCCcCceEEEcchhHHHhHHHHHHHHh
Confidence 488999999995 5789999999999999999999999999999999986 4688999999999988654444444443
Q ss_pred HhhHHHHHHHHHHHHHhhhcC--ChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhC--CCChhhhhcccCCCCHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADF--SSEQQEQLKEIYEELKAIGADSAEPRARRILAGL--GFSRAMQDRATKNFSGGWRMR 300 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~--~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~l--gl~~~~~~~~~~~LSGGqkqR 300 (548)
+...+...++........... ..+..+ +..... ...+......+ |+.. ......-.||||||||
T Consensus 340 g~VPQDtvLFNDti~yni~ygr~~at~ee----v~aaa~-------~aqi~~fi~~lP~gy~t-~VgerglklSggekqr 407 (497)
T COG5265 340 GIVPQDTVLFNDTIAYNIKYGRPDATAEE----VGAAAE-------AAQIHDFIQSLPEGYDT-GVGERGLKLSGGEKQR 407 (497)
T ss_pred CcCcccceehhhhHHHHHhccCccccHHH----HHHHHH-------HhhhhHHHHhCchhhhc-ccchheeeccCchHHH
Confidence 333332222221111110000 000000 000000 00111222222 2221 1222334599999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHH
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~ 378 (548)
|+|||+++.+|+||+|||.||+||..+...+...|+.. +.|-|+|.|.+..+.. ||.|++|++|+|++ .|+..+..
T Consensus 408 vaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~-adeiivl~~g~i~e-rg~h~~ll 485 (497)
T COG5265 408 VAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIID-ADEIIVLDNGRIVE-RGTHEELL 485 (497)
T ss_pred HHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccC-CceEEEeeCCEEEe-cCcHHHHH
Confidence 99999999999999999999999999999999988765 5799999999999976 99999999999997 57766654
Q ss_pred H
Q psy11936 379 K 379 (548)
Q Consensus 379 ~ 379 (548)
.
T Consensus 486 ~ 486 (497)
T COG5265 486 A 486 (497)
T ss_pred H
Confidence 3
No 368
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.95 E-value=2.7e-28 Score=294.48 Aligned_cols=205 Identities=22% Similarity=0.158 Sum_probs=147.5
Q ss_pred CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHH
Q psy11936 158 GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDL--KVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLA 235 (548)
Q Consensus 158 ~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~--~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~ 235 (548)
.+.+|+|+|+.|.+|++++|+||||||||||||+|+|... ..|.+|+|.++|.++.... .. ......+..
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-----~~---~r~~i~yv~ 144 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-----KH---YRGDVVYNA 144 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-----hh---cCceeEEec
Confidence 3579999999999999999999999999999999999631 2467899999887542100 00 000011222
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHhc-----CCCCh--HHH-HHHHHHhCCCChhhhhc-----ccCCCCHHHHHHHH
Q psy11936 236 ECAKLEAADFSSEQQEQLKEIYEELKAI-----GADSA--EPR-ARRILAGLGFSRAMQDR-----ATKNFSGGWRMRVS 302 (548)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~-----~~~~~--~~~-~~~~L~~lgl~~~~~~~-----~~~~LSGGqkqRva 302 (548)
+. .......++.+++.... .+..- +.... ..+ ++.+|+.+||.+ ..+. .+..|||||||||+
T Consensus 145 Q~---d~~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~t~vg~~~~~~LSGGerkRvs 219 (1394)
T TIGR00956 145 ET---DVHFPHLTVGETLDFAA-RCKTPQNRPDGVSREEYAKHIADVYMATYGLSH-TRNTKVGNDFVRGVSGGERKRVS 219 (1394)
T ss_pred cc---cccCCCCCHHHHHHHHH-HhCCCCCCCCCCCHHHHHHHHHHHHHHHcCccc-ccCceeCCCcCCCCCcccchHHH
Confidence 11 11223456666554211 11110 00111 122 356899999974 3444 45679999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCH-HHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQ-SFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~-~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
||++|+.+|+||||||||+|||+.+...+.+.|+++ +.|||+++|+. ..+..+||+|++|++|+++++ |+.++
T Consensus 220 IA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~-G~~~~ 297 (1394)
T TIGR00956 220 IAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYF-GPADK 297 (1394)
T ss_pred HHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEE-CCHHH
Confidence 999999999999999999999999999999988764 56999999996 788889999999999999865 55544
No 369
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=2.5e-27 Score=238.99 Aligned_cols=203 Identities=21% Similarity=0.265 Sum_probs=134.8
Q ss_pred eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHH--------cCCCCCCC----------CeEEEEeceeeccCch----
Q psy11936 160 DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA--------SRDLKVPP----------NIDILYCEQEVVADDL---- 217 (548)
Q Consensus 160 ~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLa--------G~~~~~~~----------~g~I~~~~q~i~~~~~---- 217 (548)
.-|+|||++|+.|..++|+|+||||||||++.+. +.....|. -..+.+.+|.....+.
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 4689999999999999999999999999999662 10000111 1234555554433221
Q ss_pred hHHHHHHHhhHHH-------HHHHHHHHHHhh------hcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh
Q psy11936 218 TAVESVLKADVKR-------TELLAECAKLEA------ADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA 284 (548)
Q Consensus 218 ~~~~~~~~~~~~~-------~~l~~~~~~~~~------~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~ 284 (548)
.++..++...... ..+..+...... ....+++.+.+.. +... ....++.++|+.+||...
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~----~~~~---~~~~~~~~~L~~vgL~~l 161 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEF----FENI---PKIARKLQTLCDVGLGYI 161 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHH----HHhh---hhHHHHHHHHHHcCCchh
Confidence 1111111100000 000000000000 0012233332211 1111 113467789999999754
Q ss_pred hhhcccCCCCHHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCE
Q psy11936 285 MQDRATKNFSGGWRMRVSLARALYIE---PTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNE 358 (548)
Q Consensus 285 ~~~~~~~~LSGGqkqRvaLAraL~~~---P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadr 358 (548)
..++++.+|||||+||++||++|+.+ |+++||||||++||+..+.++.++|.++ +.|||+||||++++. .||+
T Consensus 162 ~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~-~aD~ 240 (261)
T cd03271 162 KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK-CADW 240 (261)
T ss_pred hhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCE
Confidence 56899999999999999999999996 7999999999999999999999988764 679999999999996 6999
Q ss_pred EEEE------eCCEEEEE
Q psy11936 359 IIHL------DQQKLYYY 370 (548)
Q Consensus 359 Ii~L------~~G~i~~~ 370 (548)
|++| ++|++++.
T Consensus 241 ii~Lgp~~g~~~G~iv~~ 258 (261)
T cd03271 241 IIDLGPEGGDGGGQVVAS 258 (261)
T ss_pred EEEecCCcCCCCCEEEEe
Confidence 9999 78999865
No 370
>KOG0059|consensus
Probab=99.95 E-value=1.2e-27 Score=278.13 Aligned_cols=218 Identities=23% Similarity=0.371 Sum_probs=174.7
Q ss_pred ccEEEEeEEEEeCCce-eeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCch-hHHHH
Q psy11936 145 VDIKVENFSISAKGND-LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDL-TAVES 222 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~-iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~-~~~~~ 222 (548)
..+.++|+++.|+.+. +++++||.|++||+.|+.|+|||||||++++|+|. ..|++|++...+.++..... .....
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~--~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGE--TKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCC--ccCCcceEEEecCccccccchhhhhh
Confidence 3578999999998877 99999999999999999999999999999999985 47788888886665543211 11122
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
.+ ++.+|. .......+..+.+ .++.++.++...+....+..+|+.+||.+ ..+++++.+|||+|+|++
T Consensus 641 ~i-------GyCPQ~---d~l~~~lT~rEhL-~~~arlrG~~~~di~~~v~~ll~~~~L~~-~~~~~~~~ySgG~kRkLs 708 (885)
T KOG0059|consen 641 QL-------GYCPQF---DALWEELTGREHL-EFYARLRGLPRSDIGSAIEKLLRLVGLGP-YANKQVRTYSGGNKRRLS 708 (885)
T ss_pred hc-------ccCCch---hhhhhhccHHHHH-HHHHHHcCCChhHHHHHHHHHHHHcCChh-hhccchhhCCCcchhhHH
Confidence 22 222222 2222334444443 45666776666677788999999999985 578999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC---CeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~---~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
+|.||+.+|++++|||||+|+||.+++.+++++.+.. ++||++||.+++++.+|||+.+|.+|++... |+-...
T Consensus 709 ~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ci-Gs~q~L 785 (885)
T KOG0059|consen 709 FAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCI-GSPQEL 785 (885)
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEe-cChHHH
Confidence 9999999999999999999999999999999998763 3999999999999999999999999999987 554443
No 371
>PLN03140 ABC transporter G family member; Provisional
Probab=99.95 E-value=1.4e-27 Score=287.99 Aligned_cols=206 Identities=21% Similarity=0.229 Sum_probs=146.7
Q ss_pred EEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCC---CeEEEEeceeeccCchhHHHHHHHhhHH
Q psy11936 153 SISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPP---NIDILYCEQEVVADDLTAVESVLKADVK 229 (548)
Q Consensus 153 s~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~---~g~I~~~~q~i~~~~~~~~~~~~~~~~~ 229 (548)
++.+ .+.+|+|+|+.|++|++++|+|||||||||||++|+|.. .|. +|+|.|++.++..... . +
T Consensus 173 ~k~~-~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l--~~~~~~~G~I~~nG~~~~~~~~---~-------~ 239 (1470)
T PLN03140 173 AKKT-KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKL--DPSLKVSGEITYNGYRLNEFVP---R-------K 239 (1470)
T ss_pred CCCc-cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC--CCCCcceeEEEECCEechhhcc---c-------c
Confidence 4444 467999999999999999999999999999999999863 344 7999998876532110 0 0
Q ss_pred HHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC----------------------------------CChHHHHHHH
Q psy11936 230 RTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA----------------------------------DSAEPRARRI 275 (548)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~----------------------------------~~~~~~~~~~ 275 (548)
...++.+. .......++.+++.... .+...+. .+....+..+
T Consensus 240 ~i~yv~Q~---d~~~~~lTV~EtL~f~a-~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 315 (1470)
T PLN03140 240 TSAYISQN---DVHVGVMTVKETLDFSA-RCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYT 315 (1470)
T ss_pred eeEEeccc---ccCCCcCcHHHHHHHHH-HhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHH
Confidence 01111111 11112334444432211 1110000 0011235678
Q ss_pred HHhCCCChh----hhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEec
Q psy11936 276 LAGLGFSRA----MQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSH 347 (548)
Q Consensus 276 L~~lgl~~~----~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSH 347 (548)
|+.+||... ..+..+..|||||||||+||++|+.+|++|||||||+|||..+...+.+.|+++ +.|||+++|
T Consensus 316 L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~H 395 (1470)
T PLN03140 316 LKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLL 395 (1470)
T ss_pred HHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 999999742 235667899999999999999999999999999999999999999999988765 579999999
Q ss_pred CH-HHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 348 DQ-SFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 348 D~-~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
+. ..+..+||+|++|++|+++++ |+.++
T Consensus 396 qp~~~i~~lfD~vilL~~G~ivy~-G~~~~ 424 (1470)
T PLN03140 396 QPAPETFDLFDDIILLSEGQIVYQ-GPRDH 424 (1470)
T ss_pred CCCHHHHHHhheEEEeeCceEEEe-CCHHH
Confidence 85 578889999999999999865 55443
No 372
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.94 E-value=1.4e-26 Score=227.07 Aligned_cols=191 Identities=19% Similarity=0.225 Sum_probs=120.4
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEE-CCcEEEEECCCCCcHHHHHHHHHcCCCCCC-CCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIA-NGRRYGLVGPNGHGKTTLLRHIASRDLKVP-PNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~-~Ge~igLvGpNGsGKSTLLklLaG~~~~~~-~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++|+. +|.+. .+++|+.. +|++++|+|||||||||||++|++.....+ ..+... .....
T Consensus 5 ~i~l~nf~-~y~~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~------------~~~~~ 68 (213)
T cd03279 5 KLELKNFG-PFREE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE------------NLRSV 68 (213)
T ss_pred EEEEECCc-CcCCc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch------------hHHHH
Confidence 48889998 77554 55667644 489999999999999999999985321111 111100 00000
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHH-HHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARR-ILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~-~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
+..... ...+. ..+... .. .+...+..+ .......+. ++...++. ...++++.+|||||+||++
T Consensus 69 ~~~~~~-------~~~v~-~~f~~~--~~---~~~~~r~~g-l~~~~~~~~~~l~~g~l~-~~l~~~~~~lS~G~~~r~~ 133 (213)
T cd03279 69 FAPGED-------TAEVS-FTFQLG--GK---KYRVERSRG-LDYDQFTRIVLLPQGEFD-RFLARPVSTLSGGETFLAS 133 (213)
T ss_pred hcCCCc-------cEEEE-EEEEEC--Ce---EEEEEEecC-CCHHHHHHhhhhhhcchH-HHhcCCccccCHHHHHHHH
Confidence 000000 00000 000000 00 000000000 011111111 23333444 4568889999999999999
Q ss_pred HHHHHcc----------CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 303 LARALYI----------EPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 303 LAraL~~----------~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
|||||+. +|++|||||||++||+.+..++.++|..+ +.|||+||||++++..+||+++++++|.+
T Consensus 134 la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 134 LSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 9999985 67899999999999999999999888765 56999999999999999999999998864
No 373
>KOG0054|consensus
Probab=99.94 E-value=1.5e-26 Score=271.31 Aligned_cols=212 Identities=20% Similarity=0.295 Sum_probs=161.7
Q ss_pred ccEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 145 VDIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 145 ~~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
..|+++|++.+|.. ..+|+||||+|.+||+|||||+.|||||||+.+|-.. ..|.+|.|.+++.++...+...++.
T Consensus 1137 G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl--~e~~~G~I~IDgvdI~~igL~dLRs 1214 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRL--VEPAEGEILIDGVDISKIGLHDLRS 1214 (1381)
T ss_pred CeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHh--cCccCCeEEEcCeecccccHHHHHh
Confidence 46999999999954 4799999999999999999999999999999999863 4678899999999987766555443
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh----------hhhcccCC
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA----------MQDRATKN 292 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~~~~~~~~ 292 (548)
. ..+++|.+ ..|..++..|++-. + ...++.+-++|+..++.+. .......+
T Consensus 1215 r-------lsIIPQdP----vLFsGTvR~NLDPf-------~-e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N 1275 (1381)
T KOG0054|consen 1215 R-------LSIIPQDP----VLFSGTVRFNLDPF-------D-EYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGEN 1275 (1381)
T ss_pred c-------CeeeCCCC----ceecCccccccCcc-------c-ccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCcc
Confidence 2 23333322 22333333332110 0 1122334444444433221 12233467
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
||-||||-++|||||+.+++||+|||+|++.|+++-..+.+.|++. ++|||.|.|++..+.. ||||+||++|++++|
T Consensus 1276 ~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd-~DrVlVld~G~v~Ef 1354 (1381)
T KOG0054|consen 1276 FSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEF 1354 (1381)
T ss_pred CChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhh-cCeEEEeeCCeEeec
Confidence 9999999999999999999999999999999999999999999863 5899999999999987 999999999999999
Q ss_pred cCCHHHHH
Q psy11936 371 KGNYSMFK 378 (548)
Q Consensus 371 ~g~y~~f~ 378 (548)
+.++.-+.
T Consensus 1355 dsP~~Ll~ 1362 (1381)
T KOG0054|consen 1355 DSPAELLS 1362 (1381)
T ss_pred CChHHHHh
Confidence 88877653
No 374
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.94 E-value=3.8e-26 Score=221.77 Aligned_cols=164 Identities=16% Similarity=0.264 Sum_probs=112.8
Q ss_pred EeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC-------CCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHH
Q psy11936 163 VNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV-------PPNIDILYCEQEVVADDLTAVESVLKADVKRTELLA 235 (548)
Q Consensus 163 ~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~-------~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~ 235 (548)
++++|++.+| +++|+|||||||||||++|+|..-+. +..+.+.+.++...... ......++.
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~v~~vf 82 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPA----------NFAEVTLTF 82 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCC----------ceEEEEEEE
Confidence 6789999999 99999999999999999999752111 00112322222211000 000000000
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHc----cCC
Q psy11936 236 ECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALY----IEP 311 (548)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~----~~P 311 (548)
+ +.... ++. ....++.++++. . ...++++.+||||||||++||++|+ .+|
T Consensus 83 q---------~~~~~------------~~~-~~~~~~~~~l~~---~-~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~ 136 (197)
T cd03278 83 D---------NSDGR------------YSI-ISQGDVSEIIEA---P-GKKVQRLSLLSGGEKALTALALLFAIFRVRPS 136 (197)
T ss_pred E---------cCCCc------------eeE-EehhhHHHHHhC---C-CccccchhhcCHHHHHHHHHHHHHHHhccCCC
Confidence 0 00000 000 013456667766 2 2457889999999999999999997 467
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeC
Q psy11936 312 TLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQ 364 (548)
Q Consensus 312 ~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~ 364 (548)
++|||||||++||+.+..++.++|.++ +.|||+||||++++ .+||+++.|..
T Consensus 137 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~-~~~d~v~~~~~ 190 (197)
T cd03278 137 PFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTM-EAADRLYGVTM 190 (197)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHH-hhcceEEEEEe
Confidence 999999999999999999999999876 47999999999987 47999999863
No 375
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.94 E-value=1.2e-25 Score=234.16 Aligned_cols=312 Identities=21% Similarity=0.272 Sum_probs=183.0
Q ss_pred eEEEEeCCceeeEeeeE-EEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHH
Q psy11936 151 NFSISAKGNDLFVNANL-LIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVK 229 (548)
Q Consensus 151 nls~~y~~~~iL~~vsl-~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~ 229 (548)
++..+||.. -|+=..| ...+|.++||+|+||.||||-+++|+|.. .|.=|+. .+...++.++.. ++
T Consensus 79 e~vHRYg~N-gFkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel--~PNLG~~---------~~pp~wdeVi~~-Fr 145 (591)
T COG1245 79 EVVHRYGVN-GFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGEL--KPNLGRY---------EDPPSWDEVIKR-FR 145 (591)
T ss_pred cceeeccCC-ceEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCcc--ccCCCCC---------CCCCCHHHHHHH-hh
Confidence 456778642 1222222 34589999999999999999999999964 3322210 111122222221 11
Q ss_pred HHHHHHHHHHHhhhcCCh-hHHHHHHH--------HHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHH
Q psy11936 230 RTELLAECAKLEAADFSS-EQQEQLKE--------IYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300 (548)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~-~~~~~l~~--------~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqR 300 (548)
...+......+....... .-.+.+.. +.+-+... ...-...++.+.|+|.. .+++.+++|||||.||
T Consensus 146 GtELq~YF~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~---de~g~~devve~l~L~n-vl~r~v~~LSGGELQr 221 (591)
T COG1245 146 GTELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKV---DERGKFDEVVERLGLEN-VLDRDVSELSGGELQR 221 (591)
T ss_pred hhHHHHHHHHHHcCCcceecchHHHHHHHHHhcchHHHHHHhh---hhcCcHHHHHHHhcchh-hhhhhhhhcCchHHHH
Confidence 222211111111000000 00000000 01111111 11235678899999974 7899999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|+||.+|++++|++++|||||.||+..+....+.++++ +++||+|.||+..++-++|-|.++.. .- |-|-.+
T Consensus 222 ~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG-~p----g~YGvv 296 (591)
T COG1245 222 VAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYG-EP----GVYGVV 296 (591)
T ss_pred HHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEec-CC----ccceEe
Confidence 99999999999999999999999998877777776665 47999999999999999998877742 21 222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceeeeecC
Q psy11936 378 KKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFP 457 (548)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f~ 457 (548)
...+.-+ .-...| -.+ -.. .|.+ +-+...+.|...
T Consensus 297 s~p~svr--~gIN~y----------L~G-------------------------yl~-------~EN~-R~R~~~I~F~~~ 331 (591)
T COG1245 297 SKPKSVR--VGINEY----------LKG-------------------------YLP-------EENV-RFRPEEIEFEEK 331 (591)
T ss_pred ccchHHH--HHHHHH----------Hhc-------------------------cCc-------hhcc-cccccceeeecc
Confidence 1111100 000000 000 000 0000 001234555554
Q ss_pred CCCC-CC-CCcEEEEeeEEEeCCCCcccccCCccCCCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeeeee
Q psy11936 458 DPPP-LQ-PPILGLHNVTFAYEGMKPLLMSKADEDQGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAYEG 531 (548)
Q Consensus 458 ~~~~-~~-~~vL~l~~vs~~Y~~~~~ll~~v~~~~~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y~~ 531 (548)
++.. .+ ..+++-.++++.|++=+.-.+.=. ...|+.+-|.||| +|.+|+|.|.+.|+.|. ..+++++|=.
T Consensus 332 ~~~~~~~~~~lv~y~~~~k~~g~F~L~V~~G~-i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~---~~~~~vSyKP 407 (591)
T COG1245 332 PPRDDKARDTLVEYPDLKKTYGDFKLEVEEGE-IYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS---EEDLKVSYKP 407 (591)
T ss_pred CcccccccceeeecchheeecCceEEEecCCe-eecceEEEEECCCCcchHHHHHHHhccccCCCCC---CccceEeecc
Confidence 4332 23 667888888888864111111111 1267888888887 77999999999999999 8899999965
Q ss_pred cc
Q psy11936 532 MK 533 (548)
Q Consensus 532 ~~ 533 (548)
|.
T Consensus 408 Qy 409 (591)
T COG1245 408 QY 409 (591)
T ss_pred ee
Confidence 53
No 376
>KOG0061|consensus
Probab=99.94 E-value=3.6e-26 Score=255.77 Aligned_cols=215 Identities=24% Similarity=0.352 Sum_probs=161.1
Q ss_pred ccEEEEeEEEEeCC-----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCC-CCCCeEEEEeceeeccCchh
Q psy11936 145 VDIKVENFSISAKG-----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK-VPPNIDILYCEQEVVADDLT 218 (548)
Q Consensus 145 ~~I~l~nls~~y~~-----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~-~~~~g~I~~~~q~i~~~~~~ 218 (548)
..+.++|++....+ +.+|+|||..+++|+++||+||+||||||||++|+|.... ...+|.|.++|+......
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~-- 101 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRS-- 101 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhh--
Confidence 34778888887733 6799999999999999999999999999999999997432 346789999885432211
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhc---CCCChHHHHHHHHHhCCCChhhhhcccC----
Q psy11936 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI---GADSAEPRARRILAGLGFSRAMQDRATK---- 291 (548)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~---~~~~~~~~~~~~L~~lgl~~~~~~~~~~---- 291 (548)
.... .+++.| ........++.|.+.. ...++.- ...+.+.++++++..+|+. ...+..++
T Consensus 102 -~~~~-------s~yV~Q---dD~l~~~LTV~EtL~f-~A~lrlp~~~~~~~k~~~V~~vi~~LgL~-~~~~t~ig~~~~ 168 (613)
T KOG0061|consen 102 -FRKI-------SGYVQQ---DDVLLPTLTVRETLRF-SALLRLPSSLSKEEKRERVEEVISELGLE-KCADTLIGNPGI 168 (613)
T ss_pred -hhhe-------eEEEcc---cccccccccHHHHHHH-HHHhcCCCCCCHHHHHHHHHHHHHHcCCh-hhccceecCCCC
Confidence 1111 111111 1122345566665532 2223221 2234567899999999998 56677776
Q ss_pred -CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHH-HHHhhcCEEEEEeCCE
Q psy11936 292 -NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQS-FLDNVCNEIIHLDQQK 366 (548)
Q Consensus 292 -~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~-~l~~vadrIi~L~~G~ 366 (548)
.+|||||+||+||.-|+.+|.||+|||||+|||..+...+.+.|+++ ++|||++=|.+. .+-.+.|++++|.+|+
T Consensus 169 rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~ 248 (613)
T KOG0061|consen 169 RGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGE 248 (613)
T ss_pred CccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCc
Confidence 59999999999999999999999999999999999998888888765 689999999864 4667899999999999
Q ss_pred EEEEcCCHH
Q psy11936 367 LYYYKGNYS 375 (548)
Q Consensus 367 i~~~~g~y~ 375 (548)
+++. |.-.
T Consensus 249 ~vy~-G~~~ 256 (613)
T KOG0061|consen 249 VVYS-GSPR 256 (613)
T ss_pred EEEe-cCHH
Confidence 8865 5434
No 377
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=7.9e-26 Score=225.44 Aligned_cols=77 Identities=18% Similarity=0.248 Sum_probs=67.3
Q ss_pred hhcccCCCCHHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEE
Q psy11936 286 QDRATKNFSGGWRMRVSLARALY----IEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEI 359 (548)
Q Consensus 286 ~~~~~~~LSGGqkqRvaLAraL~----~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrI 359 (548)
.+.++.+|||||+||++|||||+ .+|++|||||||++||+.+...+.+.|.++ +.+||++||+.+ +..+||+|
T Consensus 152 ~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~-~~~~~d~i 230 (243)
T cd03272 152 EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPE-LLEVADKF 230 (243)
T ss_pred ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHhhCCEE
Confidence 46788999999999999999996 368999999999999999999999999886 457777777765 56899999
Q ss_pred EEEe
Q psy11936 360 IHLD 363 (548)
Q Consensus 360 i~L~ 363 (548)
++|.
T Consensus 231 ~~l~ 234 (243)
T cd03272 231 YGVK 234 (243)
T ss_pred EEEE
Confidence 9985
No 378
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.93 E-value=1.7e-26 Score=209.70 Aligned_cols=133 Identities=34% Similarity=0.505 Sum_probs=94.3
Q ss_pred eEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHHHh
Q psy11936 162 FVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLE 241 (548)
Q Consensus 162 L~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (548)
|+|+||+|.+|++++|+|+|||||||||++|+|. ..|.+|.|.+.+.++...........+. ++.+. .
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~--~~~~~G~i~~~~~~~~~~~~~~~~~~i~-------~~~~~---~ 68 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGL--LPPDSGSILINGKDISDIDIEELRRRIG-------YVPQD---P 68 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTS--SHESEEEEEETTEEGTTSHHHHHHHTEE-------EEESS---H
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccc--cccccccccccccccccccccccccccc-------ccccc---c
Confidence 7899999999999999999999999999999985 4568899999888775422111111000 00000 0
Q ss_pred hhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhccc----CCCCHHHHHHHHHHHHHccCCCEEEEe
Q psy11936 242 AADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRAT----KNFSGGWRMRVSLARALYIEPTLLLLD 317 (548)
Q Consensus 242 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~----~~LSGGqkqRvaLAraL~~~P~lLLLD 317 (548)
......++.++ ....++..++..+++.. ..+..+ ..|||||||||+||+||+.+|++||||
T Consensus 69 ~~~~~~tv~~~--------------~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllD 133 (137)
T PF00005_consen 69 QLFPGLTVREN--------------ESDERIEEVLKKLGLED-LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLD 133 (137)
T ss_dssp CHHTTSBHHHH--------------HHHHHHHHHHHHTTHGG-GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEE
T ss_pred ccccccccccc--------------ccccccccccccccccc-ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEe
Confidence 00111122221 13456778888888753 334444 999999999999999999999999999
Q ss_pred CCCC
Q psy11936 318 EPTN 321 (548)
Q Consensus 318 EPTn 321 (548)
||||
T Consensus 134 EPt~ 137 (137)
T PF00005_consen 134 EPTN 137 (137)
T ss_dssp STTT
T ss_pred CCCC
Confidence 9997
No 379
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=6.9e-27 Score=229.45 Aligned_cols=183 Identities=19% Similarity=0.241 Sum_probs=118.9
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++|+. +|++..++++++| +++||+|||||||||||++|+.. +|..+. ...
T Consensus 6 l~l~nfk-~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~------------~G~~~~-----~~~----- 57 (212)
T cd03274 6 LVLENFK-SYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV------------FGFRAS-----KMR----- 57 (212)
T ss_pred EEEECcc-cCCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH------------hccCHH-----Hhh-----
Confidence 7788886 8999999999988 89999999999999999999721 010000 000
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHH---HHH--HHHHHHhcCCCChHH----HHHHHHHhCCCChhhhhcccCCCCHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQ---LKE--IYEELKAIGADSAEP----RARRILAGLGFSRAMQDRATKNFSGGW 297 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~---l~~--~~~~l~~~~~~~~~~----~~~~~L~~lgl~~~~~~~~~~~LSGGq 297 (548)
....+++.+.... ....+..+. +.. ....+...+...... ...++++.++++. ..++++..|||||
T Consensus 58 -~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~-~~~~~~~~lS~G~ 132 (212)
T cd03274 58 -QKKLSDLIHNSAG---HPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPK-KSWKNISNLSGGE 132 (212)
T ss_pred -hhhHHHHhcCCCC---CCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeecccc-ccccchhhcCHHH
Confidence 0000111110000 000000000 000 000011111111011 1245566777764 4577889999999
Q ss_pred HHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEe
Q psy11936 298 RMRVSLARALYI----EPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLD 363 (548)
Q Consensus 298 kqRvaLAraL~~----~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~ 363 (548)
+||++||+|++. +|++|||||||++||+.++.++.++|.++ +.|+|+|||+. ++.++||+|++|.
T Consensus 133 ~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~-~~~~~~d~v~~~~ 203 (212)
T cd03274 133 KTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRN-NMFELADRLVGIY 203 (212)
T ss_pred HHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcH-HHHHhCCEEEEEE
Confidence 999999999974 58999999999999999999999999887 36999999996 4567999999986
No 380
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.93 E-value=1.6e-24 Score=260.27 Aligned_cols=106 Identities=27% Similarity=0.361 Sum_probs=91.2
Q ss_pred HHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHc---cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeE
Q psy11936 269 EPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALY---IEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTL 342 (548)
Q Consensus 269 ~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~---~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~Tv 342 (548)
..++ ++|..+|+.....++++.+|||||+|||+||++|+ .+|++|||||||++||+.++..|.++|..+ +.||
T Consensus 787 ~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TV 865 (1809)
T PRK00635 787 HEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTV 865 (1809)
T ss_pred HHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Confidence 3445 58899999743368999999999999999999997 699999999999999999999999988764 5799
Q ss_pred EEEecCHHHHHhhcCEEEEEe------CCEEEEEcCCHHHH
Q psy11936 343 LIVSHDQSFLDNVCNEIIHLD------QQKLYYYKGNYSMF 377 (548)
Q Consensus 343 IiVSHD~~~l~~vadrIi~L~------~G~i~~~~g~y~~f 377 (548)
|+||||++++ .+||+|++|. +|+++. .|+.+++
T Consensus 866 IiIsHdl~~i-~~aDrVi~L~p~gg~~~G~iv~-~Gtpeel 904 (1809)
T PRK00635 866 VIIEHNMHVV-KVADYVLELGPEGGNLGGYLLA-SCSPEEL 904 (1809)
T ss_pred EEEeCCHHHH-HhCCEEEEEccCCCCCCCEEEE-eCCHHHH
Confidence 9999999999 7999999996 678875 4666554
No 381
>KOG0054|consensus
Probab=99.93 E-value=5.5e-25 Score=258.20 Aligned_cols=195 Identities=28% Similarity=0.442 Sum_probs=145.2
Q ss_pred ccEEEEeEEEEeCC---ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCC----CeEEEEeceeeccCch
Q psy11936 145 VDIKVENFSISAKG---NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPP----NIDILYCEQEVVADDL 217 (548)
Q Consensus 145 ~~I~l~nls~~y~~---~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~----~g~I~~~~q~i~~~~~ 217 (548)
..++++|.+++++. .+.|+||||+|++|+.+||||+-|||||+||.+|.|......+ +|.+.|.+|.....+.
T Consensus 517 ~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ng 596 (1381)
T KOG0054|consen 517 NAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNG 596 (1381)
T ss_pred ceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCC
Confidence 35899999999864 3489999999999999999999999999999999996432222 3556677765432222
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhh----------hh
Q psy11936 218 TAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAM----------QD 287 (548)
Q Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~----------~~ 287 (548)
+ +.+|+. +|....+++.+++++.+.|..++ ..
T Consensus 597 T------------------------------vreNIL--------FG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIG 638 (1381)
T KOG0054|consen 597 T------------------------------VRENIL--------FGSPYDEERYDKVIKACALKKDLEILPFGDLTEIG 638 (1381)
T ss_pred c------------------------------HHHhhh--------cCccccHHHHHHHHHHccCHhHHhhcCCCCcceec
Confidence 1 222210 12222344444555555443221 23
Q ss_pred cccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH-HHhhc--CCeEEEEecCHHHHHhhcCEEEEEeC
Q psy11936 288 RATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDN-YLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQ 364 (548)
Q Consensus 288 ~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~-~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~ 364 (548)
.+.-+|||||||||+||||+.+++||+|||-|.|++|...-.+|.+ .+..+ ++|+|+|||.+.++.. ||.|++|++
T Consensus 639 ErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~-ad~Iivl~~ 717 (1381)
T KOG0054|consen 639 ERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPH-ADQIIVLKD 717 (1381)
T ss_pred CCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhh-CCEEEEecC
Confidence 3456899999999999999999999999999999999987666554 45443 4799999999999975 999999999
Q ss_pred CEEEEEcCCHHHHHH
Q psy11936 365 QKLYYYKGNYSMFKK 379 (548)
Q Consensus 365 G~i~~~~g~y~~f~~ 379 (548)
|+|.. .|+|++..+
T Consensus 718 G~I~~-~Gty~el~~ 731 (1381)
T KOG0054|consen 718 GKIVE-SGTYEELLK 731 (1381)
T ss_pred CeEec-ccCHHHHHh
Confidence 99986 599998763
No 382
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.93 E-value=3.1e-26 Score=212.67 Aligned_cols=202 Identities=25% Similarity=0.293 Sum_probs=151.3
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
+++.++||+.+ +-|-.+|..+..|+++-+||||||||||||-.++|. .|.+|+|.+.|+++.......+.
T Consensus 2 ~l~qln~v~~~----tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm---~~~sGsi~~~G~~l~~~~~~eLA--- 71 (248)
T COG4138 2 ILMQLNDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM---TSGSGSIQFAGQPLEAWSATELA--- 71 (248)
T ss_pred ceeeecccccc----ccccccccccccceEEEEECCCCccHHHHHHHHhCC---CCCCceEEECCcchhHHhHhHHH---
Confidence 35778888764 346678999999999999999999999999999996 78999999999877543333221
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC-CChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA-DSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
+...|+.+. +...|.+.++.+ +...-. ......+..+...+++++ .+.+.+++|||||-|||-|
T Consensus 72 ----rhRAYLsQq---q~p~f~mpV~~Y-------L~L~qP~~~~a~~i~~i~~~L~l~D-KL~Rs~~qLSGGEWQRVRL 136 (248)
T COG4138 72 ----RHRAYLSQQ---QTPPFAMPVWHY-------LTLHQPDKTRTELLNDVAGALALDD-KLGRSTNQLSGGEWQRVRL 136 (248)
T ss_pred ----HHHHHHhhc---cCCcchhhhhhh-------hhhcCchHHHHHHHHHHHhhhcccc-hhhhhhhhcCcccceeeEE
Confidence 222333322 122233333222 221111 122345667888999985 5689999999999999999
Q ss_pred HHHHcc-----C--CCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 304 ARALYI-----E--PTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 304 AraL~~-----~--P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
|..+++ + ..+||||||.|+||+.....|..+|..+ +.+|||.+||++--.+-||++|.|..|++...+
T Consensus 137 Aav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G 214 (248)
T COG4138 137 AAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASG 214 (248)
T ss_pred eEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeec
Confidence 998875 3 3599999999999998887777777655 679999999999988999999999999998753
No 383
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.92 E-value=1.7e-24 Score=232.47 Aligned_cols=213 Identities=21% Similarity=0.292 Sum_probs=161.4
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
..++++|++.. ..++|+||++.+||++||.|-=|||+|-|+++|.|. ..+.+|+|.+.++.+...+.... +
T Consensus 262 ~~l~v~~l~~~----~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~--~~~~~G~i~l~G~~v~~~sp~~A---i 332 (500)
T COG1129 262 PVLEVRNLSGG----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGA--RPASSGEILLDGKPVRIRSPRDA---I 332 (500)
T ss_pred cEEEEecCCCC----CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCC--CcCCCceEEECCEEccCCCHHHH---H
Confidence 35777777643 268999999999999999999999999999999983 45668999999998866543211 1
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHH-HHHHH---hcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEI-YEELK---AIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~-~~~l~---~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqR 300 (548)
. ....++++...........+..+|+... ...+. .+........+..+...|++.....+.++.+||||.||+
T Consensus 333 ~---~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQK 409 (500)
T COG1129 333 K---AGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQK 409 (500)
T ss_pred H---cCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhh
Confidence 0 1122333332223333344444544322 11111 112222345577888999997666678999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
|.|||.|+.+|+||||||||-|.|.-+...+.++|.++ +.+||+||-++.++..+||||++|++|+++.
T Consensus 410 VvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 410 VVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVG 481 (500)
T ss_pred HHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999988875 6899999999999999999999999999986
No 384
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.92 E-value=3.3e-24 Score=223.40 Aligned_cols=181 Identities=28% Similarity=0.410 Sum_probs=132.0
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCC-----eEEEEeceeeccCchhHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN-----IDILYCEQEVVADDLTAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~-----g~I~~~~q~i~~~~~~~~ 220 (548)
.++..++++.||+.. |.--.=+|..||++|++||||.|||||.++|+|.. .|.. ..|.|-+|.+...-..++
T Consensus 342 lv~y~~~~k~~g~F~-L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~i--kPdeg~~~~~~vSyKPQyI~~~~~gtV 418 (591)
T COG1245 342 LVEYPDLKKTYGDFK-LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVI--KPDEGSEEDLKVSYKPQYISPDYDGTV 418 (591)
T ss_pred eeecchheeecCceE-EEecCCeeecceEEEEECCCCcchHHHHHHHhccc--cCCCCCCccceEeecceeecCCCCCcH
Confidence 355566667776432 22223466788999999999999999999999864 3443 468888887754422222
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqR 300 (548)
...+...... ......--.+++.-|.|. ...++++..|||||.||
T Consensus 419 ~~~l~~~~~~----------------------------------~~~~s~~~~ei~~pl~l~-~i~e~~v~~LSGGELQR 463 (591)
T COG1245 419 EDLLRSAIRS----------------------------------AFGSSYFKTEIVKPLNLE-DLLERPVDELSGGELQR 463 (591)
T ss_pred HHHHHHhhhh----------------------------------hcccchhHHhhcCccchH-HHHhcccccCCchhHHH
Confidence 2221110000 000001123466777886 46799999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeC
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQ 364 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~ 364 (548)
|+||.||..++||+|||||+++||.+.+..+...|+++ ..|.++|.||+.+++-++||+++++.
T Consensus 464 vaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 464 VAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred HHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 99999999999999999999999999877766666554 68999999999999999999999963
No 385
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.91 E-value=5.6e-24 Score=218.38 Aligned_cols=201 Identities=23% Similarity=0.294 Sum_probs=154.6
Q ss_pred cEEEEeEEEEeCCc-eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAKGN-DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~~-~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.|+++|+.|.|... --+..||++|.+||++-|||.||||||||+++|+| +..|.+|+|.++|..+...+...++..+
T Consensus 322 ~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtG--L~~PqsG~I~ldg~pV~~e~ledYR~Lf 399 (546)
T COG4615 322 TLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTG--LYQPQSGEILLDGKPVSAEQLEDYRKLF 399 (546)
T ss_pred ceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhc--ccCCCCCceeECCccCCCCCHHHHHHHH
Confidence 59999999999765 45789999999999999999999999999999998 4689999999999988777666555544
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh--hhhc--ccCCCCHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA--MQDR--ATKNFSGGWRMR 300 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~--~~~~--~~~~LSGGqkqR 300 (548)
...+...-++.+ +.+.......+.+..+|+++.+... ..+. .+-.||-|||+|
T Consensus 400 SavFsDyhLF~~-----------------------ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKR 456 (546)
T COG4615 400 SAVFSDYHLFDQ-----------------------LLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKR 456 (546)
T ss_pred HHHhhhHhhhHh-----------------------hhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHH
Confidence 433322222211 1111122344556666666655321 1222 245699999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH----HhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNY----LQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~----L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
+++.-||+.+-+||+|||=-+.-||.-++|+... |++.++||+.||||-.... .|||++.+.+|++++-.|
T Consensus 457 lAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~-~ADrll~~~~G~~~e~tg 531 (546)
T COG4615 457 LALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFI-HADRLLEMRNGQLSELTG 531 (546)
T ss_pred HHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhh-hHHHHHHHhcCceeeccc
Confidence 9999999999999999999999999999988764 4677999999999855543 589999999999998765
No 386
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.91 E-value=1.2e-23 Score=243.21 Aligned_cols=106 Identities=25% Similarity=0.371 Sum_probs=92.7
Q ss_pred HHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEE
Q psy11936 271 RARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEP---TLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLI 344 (548)
Q Consensus 271 ~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P---~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIi 344 (548)
+..++|..+||....+++++.+|||||+|||+||++|+.+| +||||||||++||+..+..|.++|.++ +.|||+
T Consensus 809 ~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIi 888 (943)
T PRK00349 809 RKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVV 888 (943)
T ss_pred HHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 45678999999743468899999999999999999999999 999999999999999999999888765 579999
Q ss_pred EecCHHHHHhhcCEEEEE------eCCEEEEEcCCHHHHH
Q psy11936 345 VSHDQSFLDNVCNEIIHL------DQQKLYYYKGNYSMFK 378 (548)
Q Consensus 345 VSHD~~~l~~vadrIi~L------~~G~i~~~~g~y~~f~ 378 (548)
||||++++. .||+|++| ++|+|+. .|+.+++.
T Consensus 889 itH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv~-~Gt~~el~ 926 (943)
T PRK00349 889 IEHNLDVIK-TADWIIDLGPEGGDGGGEIVA-TGTPEEVA 926 (943)
T ss_pred EecCHHHHH-hCCEEEEecCCcCCCCCEEEE-eCCHHHHH
Confidence 999999985 69999999 6899986 46666553
No 387
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=2.7e-23 Score=239.89 Aligned_cols=103 Identities=26% Similarity=0.387 Sum_probs=90.2
Q ss_pred HHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHcc---CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEE
Q psy11936 271 RARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYI---EPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLI 344 (548)
Q Consensus 271 ~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~---~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIi 344 (548)
+..++|..+||....+++++.+|||||+|||+||++|+. +|+||||||||++||+..+..|.++|.++ +.|||+
T Consensus 807 ~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIv 886 (924)
T TIGR00630 807 RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVV 886 (924)
T ss_pred HHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 456788999997544688999999999999999999997 59999999999999999999999888765 579999
Q ss_pred EecCHHHHHhhcCEEEEE------eCCEEEEEcCCHH
Q psy11936 345 VSHDQSFLDNVCNEIIHL------DQQKLYYYKGNYS 375 (548)
Q Consensus 345 VSHD~~~l~~vadrIi~L------~~G~i~~~~g~y~ 375 (548)
||||++++. .||+|++| ++|+++.. |+.+
T Consensus 887 i~H~~~~i~-~aD~ii~Lgp~~G~~gG~iv~~-G~~~ 921 (924)
T TIGR00630 887 IEHNLDVIK-TADYIIDLGPEGGDGGGTIVAS-GTPE 921 (924)
T ss_pred EeCCHHHHH-hCCEEEEecCCccCCCCEEEEe-CCHH
Confidence 999999985 69999999 78999864 6544
No 388
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.90 E-value=2.6e-23 Score=208.92 Aligned_cols=95 Identities=18% Similarity=0.306 Sum_probs=80.9
Q ss_pred hHHHHHHHHHhCCCCh-------------------hhhhcccCCCCHHHHHHHHHHHHHc----cCCCEEEEeCCCCCCC
Q psy11936 268 AEPRARRILAGLGFSR-------------------AMQDRATKNFSGGWRMRVSLARALY----IEPTLLLLDEPTNHLD 324 (548)
Q Consensus 268 ~~~~~~~~L~~lgl~~-------------------~~~~~~~~~LSGGqkqRvaLAraL~----~~P~lLLLDEPTn~LD 324 (548)
...++.++|+.+||.. ...+.++.+|||||+||++||+||+ .+|++|||||||++||
T Consensus 123 ~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld 202 (251)
T cd03273 123 QQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALD 202 (251)
T ss_pred eHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCC
Confidence 3467778888888851 3456789999999999999999997 5789999999999999
Q ss_pred HHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEe
Q psy11936 325 LNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLD 363 (548)
Q Consensus 325 ~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~ 363 (548)
+..+.++.++|.++ +.|||+|||+.+.+. .||+|+-+.
T Consensus 203 ~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~-~~d~v~~~~ 242 (251)
T cd03273 203 LSHTQNIGRMIKTHFKGSQFIVVSLKEGMFN-NANVLFRTR 242 (251)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-hCCEEEEEE
Confidence 99999999999875 468999999977765 699998775
No 389
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.90 E-value=2.9e-23 Score=208.25 Aligned_cols=77 Identities=22% Similarity=0.350 Sum_probs=68.7
Q ss_pred hcccCCCCHHHHHHHHHHHHHccC----CCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEE
Q psy11936 287 DRATKNFSGGWRMRVSLARALYIE----PTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEI 359 (548)
Q Consensus 287 ~~~~~~LSGGqkqRvaLAraL~~~----P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrI 359 (548)
+.++.+|||||+||++||++|+.+ |++|||||||++||+..+.++.++|.++ +.|||+||||.+++ .+||++
T Consensus 150 ~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~-~~~d~i 228 (247)
T cd03275 150 FRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFF-SKADAL 228 (247)
T ss_pred hhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHH-hhCCeE
Confidence 445689999999999999999864 9999999999999999999999999876 46999999998877 579999
Q ss_pred EEEeC
Q psy11936 360 IHLDQ 364 (548)
Q Consensus 360 i~L~~ 364 (548)
++|..
T Consensus 229 ~~~~~ 233 (247)
T cd03275 229 VGVYR 233 (247)
T ss_pred EEEEe
Confidence 99863
No 390
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.90 E-value=2.9e-23 Score=202.61 Aligned_cols=77 Identities=25% Similarity=0.413 Sum_probs=69.8
Q ss_pred hcccCCCCHHHHHH------HHHHHHHccCCCEEEEeCCCCCCCHHHHH-HHHHHHhhc----CCeEEEEecCHHHHHhh
Q psy11936 287 DRATKNFSGGWRMR------VSLARALYIEPTLLLLDEPTNHLDLNAVI-WLDNYLQGW----KKTLLIVSHDQSFLDNV 355 (548)
Q Consensus 287 ~~~~~~LSGGqkqR------vaLAraL~~~P~lLLLDEPTn~LD~~s~~-~L~~~L~~~----~~TvIiVSHD~~~l~~v 355 (548)
++++.+||+||+|| ++|||||+.+|++|||||||++||+.++. ++.++|.++ +.|||+|||+++++. .
T Consensus 110 ~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~-~ 188 (204)
T cd03240 110 LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVD-A 188 (204)
T ss_pred hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHh-h
Confidence 67789999999996 78999999999999999999999999999 999988765 459999999999885 6
Q ss_pred cCEEEEEeC
Q psy11936 356 CNEIIHLDQ 364 (548)
Q Consensus 356 adrIi~L~~ 364 (548)
||+|++|++
T Consensus 189 ~d~i~~l~~ 197 (204)
T cd03240 189 ADHIYRVEK 197 (204)
T ss_pred CCEEEEEee
Confidence 999999964
No 391
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.89 E-value=6.2e-23 Score=224.38 Aligned_cols=183 Identities=26% Similarity=0.381 Sum_probs=132.8
Q ss_pred ccEEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCC------CCCCCCeEEEEeceeeccCch
Q psy11936 145 VDIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRD------LKVPPNIDILYCEQEVVADDL 217 (548)
Q Consensus 145 ~~I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~------~~~~~~g~I~~~~q~i~~~~~ 217 (548)
..|+++||+..-+ +..+++++||+|.+|+.+.|.|+||||||||+|+|+|+= +..|..-.+.|.+|.......
T Consensus 391 ~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~G 470 (604)
T COG4178 391 HGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQG 470 (604)
T ss_pred ceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCc
Confidence 4699999999985 468899999999999999999999999999999999851 122322334555554432211
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhh------cccC
Q psy11936 218 TAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQD------RATK 291 (548)
Q Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~------~~~~ 291 (548)
.++..+.+ .+ ...+..++.+.++|..+||.+ +.+ +--.
T Consensus 471 -tLre~l~Y--------------P~--------------------~~~~~~d~~l~~vL~~vgL~~-L~~rl~~~~~W~~ 514 (604)
T COG4178 471 -TLREALCY--------------PN--------------------AAPDFSDAELVAVLHKVGLGD-LAERLDEEDRWDR 514 (604)
T ss_pred -cHHHHHhC--------------CC--------------------CCCCCChHHHHHHHHHcCcHH-HHHHHhccCcHhh
Confidence 11111000 00 000123445666777777752 211 2234
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh--cCCeEEEEecCHHHHHhhcCEEEEEeC
Q psy11936 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG--WKKTLLIVSHDQSFLDNVCNEIIHLDQ 364 (548)
Q Consensus 292 ~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~--~~~TvIiVSHD~~~l~~vadrIi~L~~ 364 (548)
.|||||||||++||+|+++|++++|||.|++||+.+...+.+.+++ .+.|||-|+|..... .+.++.+.+.+
T Consensus 515 vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~-~~h~~~l~l~~ 588 (604)
T COG4178 515 VLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLW-NFHSRQLELLD 588 (604)
T ss_pred hcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhH-HHHhhheeecc
Confidence 6999999999999999999999999999999999999999999998 678999999987654 56777777653
No 392
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.89 E-value=1.5e-22 Score=196.79 Aligned_cols=92 Identities=22% Similarity=0.218 Sum_probs=77.7
Q ss_pred HHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc-----C-
Q psy11936 270 PRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARAL----YIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW-----K- 339 (548)
Q Consensus 270 ~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL----~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~-----~- 339 (548)
.++.++|.. . ...++++.+||||||||++||+|| +.+|++|||||||++||+..+..+.++|.+. +
T Consensus 91 ~~~~~~l~~---~-~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~ 166 (198)
T cd03276 91 DMARSFLTS---N-KAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGR 166 (198)
T ss_pred HHHHHHhcc---c-cccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCc
Confidence 455566665 2 345788999999999999999999 6999999999999999999999888888663 2
Q ss_pred CeEEEEecCHHHHHhhcCEEEEEeCCE
Q psy11936 340 KTLLIVSHDQSFLDNVCNEIIHLDQQK 366 (548)
Q Consensus 340 ~TvIiVSHD~~~l~~vadrIi~L~~G~ 366 (548)
.|||++||+++.+..+ |+|.+|..++
T Consensus 167 ~~iii~th~~~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 167 QFIFITPQDISGLASS-DDVKVFRMKD 192 (198)
T ss_pred EEEEEECCcccccccc-cceeEEEecC
Confidence 4899999999999875 9999998654
No 393
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.89 E-value=5.4e-23 Score=195.99 Aligned_cols=218 Identities=20% Similarity=0.251 Sum_probs=147.1
Q ss_pred cEEEEeEEEEeC----CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCe-----EEEEeceeeccCc
Q psy11936 146 DIKVENFSISAK----GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI-----DILYCEQEVVADD 216 (548)
Q Consensus 146 ~I~l~nls~~y~----~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g-----~I~~~~q~i~~~~ 216 (548)
.+.+.||+..+. --.+++++|++++.||+-||||.+|||||-..|+|+|.. ..+- +..+.+.++....
T Consensus 3 LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~---kdnW~vTADR~Rf~~idLL~L~ 79 (330)
T COG4170 3 LLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVN---KDNWRVTADRMRFDDIDLLRLS 79 (330)
T ss_pred cccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhccc---ccceEEEhhhcccccchhhcCC
Confidence 366788888773 235899999999999999999999999999999999842 2221 2223333332222
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC-----CChHHHHHHHHHhCCCCh--hhhhcc
Q psy11936 217 LTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA-----DSAEPRARRILAGLGFSR--AMQDRA 289 (548)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-----~~~~~~~~~~L~~lgl~~--~~~~~~ 289 (548)
....+.+++.. ..++++.... -..+...+..++-.-.-.+..-+. .....++-++|.++|+.+ +....+
T Consensus 80 Pr~RRk~ig~~---isMIFQeP~s-CLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SY 155 (330)
T COG4170 80 PRERRKLVGHN---VSMIFQEPQS-CLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSY 155 (330)
T ss_pred hHHhhhhhccc---hhhhhcCchh-hcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhC
Confidence 22222222111 1111111100 000011111111000000000011 113567889999999974 456788
Q ss_pred cCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCC
Q psy11936 290 TKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQ 365 (548)
Q Consensus 290 ~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G 365 (548)
+.+|--||-|+|+||.|++.+|.+||.|||||++|+.+...+..+|..+ +.||+++|||+..+...||+|-+|.-|
T Consensus 156 P~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCG 235 (330)
T COG4170 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCG 235 (330)
T ss_pred cchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEec
Confidence 9999999999999999999999999999999999999999999988765 469999999999999999999999888
Q ss_pred EEEEE
Q psy11936 366 KLYYY 370 (548)
Q Consensus 366 ~i~~~ 370 (548)
+-++.
T Consensus 236 Q~~ES 240 (330)
T COG4170 236 QTVES 240 (330)
T ss_pred ccccc
Confidence 87653
No 394
>KOG2355|consensus
Probab=99.89 E-value=1.1e-22 Score=193.48 Aligned_cols=208 Identities=24% Similarity=0.260 Sum_probs=144.4
Q ss_pred cEEEEeEEEEeCC-ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHH---H
Q psy11936 146 DIKVENFSISAKG-NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAV---E 221 (548)
Q Consensus 146 ~I~l~nls~~y~~-~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~---~ 221 (548)
.|++.++.|.|.. .+++-|+|++++.|.+..|||.||||||||||+|+|.-+ ...+.|...+.+...+..-.- -
T Consensus 13 aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm--v~~~~v~VlgrsaFhDt~l~~Sgdl 90 (291)
T KOG2355|consen 13 AIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM--VGGGVVQVLGRSAFHDTSLESSGDL 90 (291)
T ss_pred eEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc--ccCCeEEEcCcCccccccccccCce
Confidence 4899999999954 589999999999999999999999999999999998532 222334433332211100000 0
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
.+++............ .. ...+..+ ...+...+.... .|-+.++..+.++ ..-+.+.+|-|||+||
T Consensus 91 ~YLGgeW~~~~~~age--vp-lq~D~sa-------e~mifgV~g~dp-~Rre~LI~iLDId---l~WRmHkvSDGqrRRV 156 (291)
T KOG2355|consen 91 SYLGGEWSKTVGIAGE--VP-LQGDISA-------EHMIFGVGGDDP-ERREKLIDILDID---LRWRMHKVSDGQRRRV 156 (291)
T ss_pred eEeccccccccccccc--cc-ccccccH-------HHHHhhccCCCh-hHhhhhhhheecc---ceEEEeeccccchhhh
Confidence 0000000000000000 00 0001111 111223334333 5556677777775 3456789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG----WKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~----~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
.||.-|+..=.+|||||-|-.||..++..|.++|+. .+.|||..||-.+=+...++++++|.+|+++.
T Consensus 157 QicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 157 QICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVD 228 (291)
T ss_pred HHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeee
Confidence 999999999999999999999999999999999975 36799999999999999999999999999986
No 395
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.88 E-value=3e-22 Score=194.61 Aligned_cols=141 Identities=17% Similarity=0.208 Sum_probs=103.7
Q ss_pred eeEeeeEEEECCc-EEEEECCCCCcHHHHHHHHH--------cCCCCCCCC--eEEEEeceeeccCchhHHHHHHHhhHH
Q psy11936 161 LFVNANLLIANGR-RYGLVGPNGHGKTTLLRHIA--------SRDLKVPPN--IDILYCEQEVVADDLTAVESVLKADVK 229 (548)
Q Consensus 161 iL~~vsl~I~~Ge-~igLvGpNGsGKSTLLklLa--------G~~~~~~~~--g~I~~~~q~i~~~~~~~~~~~~~~~~~ 229 (548)
-+.++||+|.+|+ +++|+|||||||||||++|+ |. ..|.. ..+.|.+|.
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~--~vp~~~~~~~~~~~~~------------------ 75 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGL--PIPAAEGSSLPVFENI------------------ 75 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCC--CccccccccCcCccEE------------------
Confidence 4568899999996 69999999999999999997 32 11211 111111111
Q ss_pred HHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHcc
Q psy11936 230 RTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYI 309 (548)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~ 309 (548)
+..++.. .......++||+||+|++.|++++ .
T Consensus 76 ----------------------------------------------~~~lg~~-~~l~~~~s~fs~g~~~~~~i~~~~-~ 107 (200)
T cd03280 76 ----------------------------------------------FADIGDE-QSIEQSLSTFSSHMKNIARILQHA-D 107 (200)
T ss_pred ----------------------------------------------EEecCch-hhhhcCcchHHHHHHHHHHHHHhC-C
Confidence 1122222 234556789999999999999885 8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHH-HHH---hhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 310 EPTLLLLDEPTNHLDLNAVIWLD-NYL---QGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 310 ~P~lLLLDEPTn~LD~~s~~~L~-~~L---~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
+|+++||||||++||+.....+. .++ .+.+.|+|++||+.+ +..+||+++.|++|++...
T Consensus 108 ~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~-l~~~~d~~~~l~~g~l~~~ 171 (200)
T cd03280 108 PDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGE-LKAYAYKREGVENASMEFD 171 (200)
T ss_pred CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHH-HHHHHhcCCCeEEEEEEEe
Confidence 99999999999999998876653 233 344689999999954 5678999999999999753
No 396
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.85 E-value=1.9e-20 Score=198.10 Aligned_cols=219 Identities=19% Similarity=0.276 Sum_probs=161.1
Q ss_pred cccEEEEeEEEEeCC-ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee-ccCchhHHH
Q psy11936 144 AVDIKVENFSISAKG-NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV-VADDLTAVE 221 (548)
Q Consensus 144 ~~~I~l~nls~~y~~-~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i-~~~~~~~~~ 221 (548)
...|+++||+..-.. .+.+++|||+|..||++||.|-.|-|-+.|+.+|+|. ..+.+|+|.+.+.++ ...+.....
T Consensus 255 ~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGl--r~~~~G~I~l~G~~v~~~~~~~~~r 332 (501)
T COG3845 255 EVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGL--RKPASGRILLNGKDVLGRLSPRERR 332 (501)
T ss_pred CeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCC--CccCCceEEECCEeccccCCHHHHH
Confidence 357999999987643 5789999999999999999999999999999999985 345669999999886 222222111
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHH---HH---hcCCCChHHHHHHHHHhCCCChhhhhcccCCCCH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEE---LK---AIGADSAEPRARRILAGLGFSRAMQDRATKNFSG 295 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~---l~---~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 295 (548)
. ....++++...-.......+..+|+..-... +. .+........+.++++.|++...-...++.+|||
T Consensus 333 ~------~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSG 406 (501)
T COG3845 333 R------LGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSG 406 (501)
T ss_pred h------cCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCC
Confidence 0 0112222221111122233333433211000 00 1112234566788999998864445677899999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|.+||+-+||=|..+|++||+..||-|||..+.+.+.+.|.+. +.+||+||-|++++..+||||.+|.+|+++..
T Consensus 407 GNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~ 484 (501)
T COG3845 407 GNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGI 484 (501)
T ss_pred cceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecc
Confidence 9999999999999999999999999999999999998887654 67999999999999999999999999999753
No 397
>KOG0060|consensus
Probab=99.83 E-value=5.1e-20 Score=197.12 Aligned_cols=198 Identities=23% Similarity=0.297 Sum_probs=132.8
Q ss_pred ccEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCC------CCCCCC---eEEEEeceeec
Q psy11936 145 VDIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRD------LKVPPN---IDILYCEQEVV 213 (548)
Q Consensus 145 ~~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~------~~~~~~---g~I~~~~q~i~ 213 (548)
..|++++|+++-.. ..+.+|+||.|..|+-+.|.||||||||+|||+|+|+- +..|.. ..+.|.+|...
T Consensus 432 n~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPY 511 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPY 511 (659)
T ss_pred ceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCC
Confidence 47999999998744 56778899999999999999999999999999999851 011112 23677777653
Q ss_pred cCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCC-CChhhhhcccCC
Q psy11936 214 ADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLG-FSRAMQDRATKN 292 (548)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lg-l~~~~~~~~~~~ 292 (548)
....+..++++-.. ...+......+ .+.+....+. .....+++++| ++......-...
T Consensus 512 mt~GTLRdQvIYP~----------~~~~~~~~~~~-d~~i~r~Le~----------v~L~hl~~r~ggld~~~~~dW~dv 570 (659)
T KOG0060|consen 512 MTLGTLRDQVIYPL----------KAEDMDSKSAS-DEDILRILEN----------VQLGHLLEREGGLDQQVDWDWMDV 570 (659)
T ss_pred ccccchhheeeccC----------ccccccccCCC-HHHHHHHHHH----------hhhhhHHHHhCCCCchhhccHHhh
Confidence 32222111111000 00000000000 0011111110 11223444443 321111223568
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeC
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQ 364 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~ 364 (548)
||+||+||+++||.+..+|.+-||||-||++|.+....+.+.+++.+.|.|-|+|...+. ++-|.++.|+.
T Consensus 571 LS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~-kfHd~~L~~~g 641 (659)
T KOG0060|consen 571 LSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLW-KFHDYVLRMDG 641 (659)
T ss_pred cCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHH-hhhhEEEEecC
Confidence 999999999999999999999999999999999999999999999999999999998765 67899999975
No 398
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.82 E-value=9e-20 Score=179.21 Aligned_cols=82 Identities=13% Similarity=0.076 Sum_probs=68.6
Q ss_pred hhhcccCCCCHHHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----C-CeEEEEecCHHHHHhh
Q psy11936 285 MQDRATKNFSGGWRMRVSLARAL----YIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----K-KTLLIVSHDQSFLDNV 355 (548)
Q Consensus 285 ~~~~~~~~LSGGqkqRvaLAraL----~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~-~TvIiVSHD~~~l~~v 355 (548)
..+..+.+||||||||+.+|++| +.+|++|||||||++||+.+...+.+.|..+ + .|+|+||||+.....+
T Consensus 119 ~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~ 198 (213)
T cd03277 119 LQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNY 198 (213)
T ss_pred ccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcc
Confidence 34667889999999999877554 5899999999999999999999888888654 2 3799999998877777
Q ss_pred cC--EEEEEeCCE
Q psy11936 356 CN--EIIHLDQQK 366 (548)
Q Consensus 356 ad--rIi~L~~G~ 366 (548)
|| +|++|.+|+
T Consensus 199 ~~~~~v~~l~~g~ 211 (213)
T cd03277 199 HEKMTVLCVYNGP 211 (213)
T ss_pred cCceEEEEEecCc
Confidence 76 778888875
No 399
>KOG0065|consensus
Probab=99.81 E-value=2.3e-20 Score=215.29 Aligned_cols=211 Identities=21% Similarity=0.265 Sum_probs=146.6
Q ss_pred EEEEeEEEEe----CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 147 IKVENFSISA----KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 147 I~l~nls~~y----~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
....|+.+.- +.+.+|+||+=-+.+|-.+||+|+|||||||||++|+|+...---+|+|.+.|..... ...
T Consensus 788 ~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF-- 862 (1391)
T KOG0065|consen 788 FYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETF-- 862 (1391)
T ss_pred EEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhh--
Confidence 4455555544 4467999999999999999999999999999999999863222224666666554321 111
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhc---CCCChHHHHHHHHHhCCCChhhhhcccCC----CCH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI---GADSAEPRARRILAGLGFSRAMQDRATKN----FSG 295 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~---~~~~~~~~~~~~L~~lgl~~~~~~~~~~~----LSG 295 (548)
.+..++..|. .......++.|.+.. ...|+.- +..+..+.++++++.++|.+ ..+.-++. ||.
T Consensus 863 -----~R~~GYvqQ~---DiH~~~~TVrESL~f-SA~LRlp~~v~~~ek~~yVe~Vi~lleL~~-~~daiVG~~G~GLs~ 932 (1391)
T KOG0065|consen 863 -----ARVSGYVEQQ---DIHSPELTVRESLRF-SAALRLPKEVSDEEKYEYVEEVIELLELKE-YADALVGLPGSGLST 932 (1391)
T ss_pred -----ccccceeecc---cccCcccchHHHHHH-HHHHcCCCcCCHHHHHHHHHHHHHHhCchh-hhhhhccCCCCCCCH
Confidence 1122232221 122234455555432 2233321 22223356889999999973 45555655 999
Q ss_pred HHHHHHHHHHHHccCC-CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHH-HHhhcCEEEEEeCC-EEEE
Q psy11936 296 GWRMRVSLARALYIEP-TLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSF-LDNVCNEIIHLDQQ-KLYY 369 (548)
Q Consensus 296 GqkqRvaLAraL~~~P-~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~-l~~vadrIi~L~~G-~i~~ 369 (548)
+||+|+.||--|+.+| .||+|||||||||..+...+.++++++ |.|||.+=|...- +-+..|+++.|..| +.++
T Consensus 933 eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY 1012 (1391)
T KOG0065|consen 933 EQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVY 1012 (1391)
T ss_pred HHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEE
Confidence 9999999999999999 999999999999999988888888765 6899999998754 44558999999764 5554
Q ss_pred EcCC
Q psy11936 370 YKGN 373 (548)
Q Consensus 370 ~~g~ 373 (548)
+ |+
T Consensus 1013 ~-G~ 1015 (1391)
T KOG0065|consen 1013 F-GP 1015 (1391)
T ss_pred e-cC
Confidence 4 54
No 400
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.80 E-value=2.6e-19 Score=177.02 Aligned_cols=153 Identities=23% Similarity=0.233 Sum_probs=112.0
Q ss_pred CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHH
Q psy11936 157 KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAE 236 (548)
Q Consensus 157 ~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~ 236 (548)
+...+.+|++|++..|++++|+||||+||||||++|+-. . ++.+
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~----------~--------------------------~la~ 58 (222)
T cd03285 15 DVAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI----------V--------------------------LMAQ 58 (222)
T ss_pred CCCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH----------H--------------------------HHHH
Confidence 345689999999999999999999999999999999610 0 0000
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHH--ccCCCEE
Q psy11936 237 CAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARAL--YIEPTLL 314 (548)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL--~~~P~lL 314 (548)
.. ...+.. ...-..+..++..+|+.+. ....+|+|+++++.+++++ +.+|+++
T Consensus 59 ~g---~~vpa~------------------~~~~~~~~~il~~~~l~d~----~~~~lS~~~~e~~~~a~il~~~~~~sLv 113 (222)
T cd03285 59 IG---CFVPCD------------------SADIPIVDCILARVGASDS----QLKGVSTFMAEMLETAAILKSATENSLI 113 (222)
T ss_pred hC---CCcCcc------------------cEEEeccceeEeeeccccc----hhcCcChHHHHHHHHHHHHHhCCCCeEE
Confidence 00 000000 0000012335566676532 3678999999999999999 8999999
Q ss_pred EEeCC---CCCCCHHHHHHHH-HHHhh-cCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 315 LLDEP---TNHLDLNAVIWLD-NYLQG-WKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 315 LLDEP---Tn~LD~~s~~~L~-~~L~~-~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
||||| ||+||..++.|.. +.+.+ .+.++|++||+ ..+..+||++..+.+|++....
T Consensus 114 LLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~-~el~~~~~~~~~i~~g~~~~~~ 174 (222)
T cd03285 114 IIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHF-HELTALADEVPNVKNLHVTALT 174 (222)
T ss_pred EEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEech-HHHHHHhhcCCCeEEEEEEEEE
Confidence 99999 9999999887755 66654 46899999997 5567899999999999886543
No 401
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=6.7e-19 Score=179.55 Aligned_cols=76 Identities=17% Similarity=0.197 Sum_probs=67.0
Q ss_pred cCCCCHHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEe
Q psy11936 290 TKNFSGGWRMRVSLARALYI----EPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLD 363 (548)
Q Consensus 290 ~~~LSGGqkqRvaLAraL~~----~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~ 363 (548)
..+|||||+||++||++++. +|++|||||||++||+.....+.+.|..+ +.|+|+||||+..+ .+||+++.|.
T Consensus 168 ~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~-~~~d~~~~l~ 246 (276)
T cd03241 168 AKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVA-AMADNHFLVE 246 (276)
T ss_pred hhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHH-HhcCcEEEEE
Confidence 34599999999999987654 99999999999999999999999998876 46999999999965 6899999998
Q ss_pred CCE
Q psy11936 364 QQK 366 (548)
Q Consensus 364 ~G~ 366 (548)
+|.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 763
No 402
>KOG0064|consensus
Probab=99.80 E-value=2.2e-19 Score=189.98 Aligned_cols=195 Identities=23% Similarity=0.356 Sum_probs=129.3
Q ss_pred ccEEEEeEEEEe-CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCC------CCCCCCeEEEEeceeeccCch
Q psy11936 145 VDIKVENFSISA-KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRD------LKVPPNIDILYCEQEVVADDL 217 (548)
Q Consensus 145 ~~I~l~nls~~y-~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~------~~~~~~g~I~~~~q~i~~~~~ 217 (548)
..|.++||-+-- .+..++..++|.|.+|-.+.|+||||||||+|+|+|.|+- +..|..-.++|.+|.......
T Consensus 480 ~gI~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~g 559 (728)
T KOG0064|consen 480 NGIILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGG 559 (728)
T ss_pred cceEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcC
Confidence 458899988765 4566889999999999999999999999999999999851 234555568888876543221
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhC-CCChhhhhcccCCCCHH
Q psy11936 218 TAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGL-GFSRAMQDRATKNFSGG 296 (548)
Q Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~l-gl~~~~~~~~~~~LSGG 296 (548)
+..++++-.+. . .+. ....+.......+ ... -..+.++.+- |++ .. ..--..||||
T Consensus 560 tlRDQIIYPdS-~----e~~---~~kg~~d~dL~~i---L~~----------v~L~~i~qr~~g~d-a~-~dWkd~LsgG 616 (728)
T KOG0064|consen 560 TLRDQIIYPDS-S----EQM---KRKGYTDQDLEAI---LDI----------VHLEHILQREGGWD-AV-RDWKDVLSGG 616 (728)
T ss_pred cccceeecCCc-H----HHH---HhcCCCHHHHHHH---HHH----------hhHHHHHHhccChh-hh-ccHHhhccch
Confidence 11111110000 0 000 0000000000000 000 0011222222 232 11 1122469999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEe
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLD 363 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~ 363 (548)
+|||+++||.+.+.|..-+|||-||+..+.....+.+..++++.++|-|||..... .+-++++.++
T Consensus 617 ekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~gi~llsithrpslw-k~h~~ll~~d 682 (728)
T KOG0064|consen 617 EKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGISLLSITHRPSLW-KYHTHLLEFD 682 (728)
T ss_pred HHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhcCceEEEeecCccHH-HHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999877 4667777663
No 403
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.80 E-value=3.9e-19 Score=183.79 Aligned_cols=180 Identities=27% Similarity=0.318 Sum_probs=129.2
Q ss_pred eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCC------CCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHH
Q psy11936 160 DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRD------LKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTEL 233 (548)
Q Consensus 160 ~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~------~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l 233 (548)
.+|+|+||+|++|++++|+|+|||||||||++|+|.. ...|++|.+..-...+. ..+...
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~--------a~iPge------ 462 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS--------ALIPGE------ 462 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchh--------hccCcc------
Confidence 5799999999999999999999999999999999853 24566666543221110 000000
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh-hhhcccCCCCHHHHHHHHHHHHHccCCC
Q psy11936 234 LAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA-MQDRATKNFSGGWRMRVSLARALYIEPT 312 (548)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~-~~~~~~~~LSGGqkqRvaLAraL~~~P~ 312 (548)
++..+...+ +++.+....+ .-..+.++|.+.|+.+. +..+..++||-||+-|+.||+++...|+
T Consensus 463 ------~Ep~f~~~t-------ilehl~s~tG--D~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn 527 (593)
T COG2401 463 ------YEPEFGEVT-------ILEHLRSKTG--DLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPN 527 (593)
T ss_pred ------cccccCchh-------HHHHHhhccC--chhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCC
Confidence 000000011 1222221111 22346679999999764 3456788999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHh----hcCCeEEEEecCHHHHHhh-cCEEEEEeCCEEE
Q psy11936 313 LLLLDEPTNHLDLNAVIWLDNYLQ----GWKKTLLIVSHDQSFLDNV-CNEIIHLDQQKLY 368 (548)
Q Consensus 313 lLLLDEPTn~LD~~s~~~L~~~L~----~~~~TvIiVSHD~~~l~~v-adrIi~L~~G~i~ 368 (548)
+++.||-.+|||+.+...+..-|. +.+.|+++|||..++.+.+ -|.++.+.-|...
T Consensus 528 ~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 528 VLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred cEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence 999999999999998776665554 4578999999999999998 7888888766543
No 404
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.79 E-value=9.2e-19 Score=167.40 Aligned_cols=71 Identities=15% Similarity=0.259 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeC
Q psy11936 293 FSGGWRMRVSLARALY----IEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQ 364 (548)
Q Consensus 293 LSGGqkqRvaLAraL~----~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~ 364 (548)
|||||+||++|||+|+ .+|+++||||||++||+.....+.++|..+ +.|+|+|||+.+.+. .||+++.+..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~-~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFE-NADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCCeEEEEEE
Confidence 9999999999999996 699999999999999999999888888765 479999999999875 7999999864
No 405
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.79 E-value=1.2e-18 Score=163.89 Aligned_cols=72 Identities=22% Similarity=0.343 Sum_probs=63.4
Q ss_pred CCCHHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeC
Q psy11936 292 NFSGGWRMRVSLARALYI----EPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQ 364 (548)
Q Consensus 292 ~LSGGqkqRvaLAraL~~----~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~ 364 (548)
+||+||++|++||++|+. +|+++|||||+++||+.....+.+.+.++ +.++|++||+.+++. .+|++++|..
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~-~~d~~~~l~~ 155 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAE-LADKLIHIKK 155 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hhhhEEEEEE
Confidence 499999999999999987 78999999999999999888777766554 469999999999986 5899999864
No 406
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.78 E-value=1.5e-18 Score=209.29 Aligned_cols=194 Identities=21% Similarity=0.201 Sum_probs=135.1
Q ss_pred HHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCH
Q psy11936 275 ILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEP--TLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQ 349 (548)
Q Consensus 275 ~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P--~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~ 349 (548)
.|..+||....+++.+.+|||||+|||+||+||+.+| .+|||||||++||+..+..|.++|+++ +.|||+||||+
T Consensus 459 ~L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~ 538 (1809)
T PRK00635 459 ILIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDE 538 (1809)
T ss_pred HHHhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence 4567788643358999999999999999999999999 899999999999999999999888765 57999999999
Q ss_pred HHHHhhcCEEEEEe------CCEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q psy11936 350 SFLDNVCNEIIHLD------QQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRK 423 (548)
Q Consensus 350 ~~l~~vadrIi~L~------~G~i~~~~g~y~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~ 423 (548)
+++ .+||+|++|. +|+++. .|+++.+...... + ..
T Consensus 539 ~vi-~~aDrVi~L~pGag~~gG~Iv~-~G~~~eil~~~~~---------------l---~~------------------- 579 (1809)
T PRK00635 539 QMI-SLADRIIDIGPGAGIFGGEVLF-NGSPREFLAKSDS---------------L---TA------------------- 579 (1809)
T ss_pred HHH-HhCCEEEEEcCCcccCCCEEEE-ecCHHHHhhChHH---------------H---HH-------------------
Confidence 955 7899999996 678764 6776665321000 0 00
Q ss_pred HHHHHHHHhhhcccCCCcccccCCccceeeeecCCCCCCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc-
Q psy11936 424 QEKNKSKLQKADEDQGPTELIQKPREYVVKFSFPDPPPLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR- 501 (548)
Q Consensus 424 ~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f~~~~~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~- 501 (548)
.... ... ... .|...+....+|++++++. ..|+++|+.. .|+.+.|.|+|
T Consensus 580 ------~~l~--~~~-~~~-------------~~~~~~~~~~~L~l~~~~~------~~Lk~isl~Ip~Geiv~VtG~nG 631 (1809)
T PRK00635 580 ------KYLR--QEL-TIP-------------IPEKRTNSLGTLTLSKATK------HNLKDLTISLPLGRLTVVTGVSG 631 (1809)
T ss_pred ------HHhc--Ccc-ccc-------------CcccccCCCCeEEEecccc------CCccceEEEEcCCcEEEEEcCCC
Confidence 0000 000 000 0000011234788888863 2689999975 88889998885
Q ss_pred ---cceee---------ccCCCCCCCCCCeeeccceeeeeeecccee
Q psy11936 502 ---EYVVK---------FSFPDPPPLQPPILGLHNVTFAYEGMKPLL 536 (548)
Q Consensus 502 ---~~~~~---------~~~~~~~~~~~~~~~~~n~~~~y~~~~~~~ 536 (548)
|||++ ++.|+.+|..+ +-++|==++-+++|.|.-
T Consensus 632 SGKSTLl~~~L~~~l~~~l~~~~~~~~~-i~g~~i~~vi~idQspig 677 (1809)
T PRK00635 632 SGKSSLINDTLVPAVEEFIEQGFCSNLS-IQWGAISRLVHITRDLPG 677 (1809)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCccccc-ccccccceeEEecCCCCC
Confidence 78887 77887544332 222333367888898864
No 407
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.78 E-value=1.5e-18 Score=200.89 Aligned_cols=102 Identities=25% Similarity=0.325 Sum_probs=88.2
Q ss_pred HHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecC
Q psy11936 274 RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEP--TLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHD 348 (548)
Q Consensus 274 ~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P--~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD 348 (548)
+.|..+||....+++++.+|||||+|||+||++|+.+| .+|||||||++||+..+.+|.++|+++ +.|||+||||
T Consensus 469 ~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd 548 (924)
T TIGR00630 469 GFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHD 548 (924)
T ss_pred HhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 34777888643368999999999999999999999986 899999999999999999999988765 5799999999
Q ss_pred HHHHHhhcCEEEEE------eCCEEEEEcCCHHHH
Q psy11936 349 QSFLDNVCNEIIHL------DQQKLYYYKGNYSMF 377 (548)
Q Consensus 349 ~~~l~~vadrIi~L------~~G~i~~~~g~y~~f 377 (548)
++++. +||+|++| ++|+|+. .|+.+.+
T Consensus 549 ~~~i~-~aD~vi~LgpgaG~~~G~Iv~-~g~~~el 581 (924)
T TIGR00630 549 EETIR-AADYVIDIGPGAGIHGGEVVA-SGTPEEI 581 (924)
T ss_pred HHHHh-hCCEEEEecccccCCCCEEee-ccCHHHH
Confidence 99986 89999999 8999875 4665543
No 408
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.77 E-value=2.1e-18 Score=167.86 Aligned_cols=81 Identities=12% Similarity=0.062 Sum_probs=62.8
Q ss_pred cccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH----HHHHhhcCCeEEEEecCHHHHHhhcCEEEEEe
Q psy11936 288 RATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWL----DNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLD 363 (548)
Q Consensus 288 ~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L----~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~ 363 (548)
...+.+|++++| +..+.+++.+|+++||||||++||+.....+ .+.+.+.+.++|++||+.+++. .|+++..+.
T Consensus 87 ~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~-~~~~~~~l~ 164 (202)
T cd03243 87 DGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELAD-LPEQVPGVK 164 (202)
T ss_pred CCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHH-HhhcCCCeE
Confidence 345677777775 6666788899999999999999999765544 3344455789999999998876 577888888
Q ss_pred CCEEEEE
Q psy11936 364 QQKLYYY 370 (548)
Q Consensus 364 ~G~i~~~ 370 (548)
.+++...
T Consensus 165 ~~~~~~~ 171 (202)
T cd03243 165 NLHMEEL 171 (202)
T ss_pred EEEEEEE
Confidence 8887643
No 409
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=2.8e-17 Score=167.09 Aligned_cols=77 Identities=26% Similarity=0.274 Sum_probs=69.0
Q ss_pred cCCCCHHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhc---C
Q psy11936 290 TKNFSGGWRMRVSLARALY---------IEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVC---N 357 (548)
Q Consensus 290 ~~~LSGGqkqRvaLAraL~---------~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~va---d 357 (548)
...||+||+|+++||++|+ .+|++|||||||++||+..+.++.+.|.+++ .++++||+...+..+| +
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~-q~ii~~~~~~~~~~~~~~~~ 259 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV-QTFVTTTDLADFDALWLRRA 259 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC-CEEEEeCCchhccchhccCc
Confidence 4568999999999999985 7999999999999999999999999998876 6777888888888888 7
Q ss_pred EEEEEeCCEE
Q psy11936 358 EIIHLDQQKL 367 (548)
Q Consensus 358 rIi~L~~G~i 367 (548)
+|+.|++|++
T Consensus 260 ~i~~l~~g~i 269 (270)
T cd03242 260 QIFRVDAGTL 269 (270)
T ss_pred cEEEEeCcEE
Confidence 8999999986
No 410
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.73 E-value=3.8e-17 Score=159.54 Aligned_cols=141 Identities=19% Similarity=0.124 Sum_probs=97.5
Q ss_pred CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHH
Q psy11936 158 GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAEC 237 (548)
Q Consensus 158 ~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~ 237 (548)
...+++|++|++..|++++|+||||+||||||++|++..+ ...-| -.+ +
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~-la~~G------~~v----------------------p-- 63 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI-MAQIG------CFV----------------------P-- 63 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH-HHHcC------CCc----------------------c--
Confidence 4568999999999999999999999999999999986310 00000 000 0
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEe
Q psy11936 238 AKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLD 317 (548)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLD 317 (548)
....... ..+.++..++..+ ...+..++||+|++++ ..+.+++.+|+++|||
T Consensus 64 ----a~~~~l~----------------------~~d~I~~~~~~~d-~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllD 115 (204)
T cd03282 64 ----AEYATLP----------------------IFNRLLSRLSNDD-SMERNLSTFASEMSET-AYILDYADGDSLVLID 115 (204)
T ss_pred ----hhhcCcc----------------------ChhheeEecCCcc-ccchhhhHHHHHHHHH-HHHHHhcCCCcEEEec
Confidence 0000000 0112334445543 3456778999999965 5666688999999999
Q ss_pred CCCCCCCHHHH----HHHHHHHhhcCCeEEEEecCHHHHHhhcC
Q psy11936 318 EPTNHLDLNAV----IWLDNYLQGWKKTLLIVSHDQSFLDNVCN 357 (548)
Q Consensus 318 EPTn~LD~~s~----~~L~~~L~~~~~TvIiVSHD~~~l~~vad 357 (548)
||++++|+... ..+.+.+.+.+.++|++||+.+++..+++
T Consensus 116 E~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 116 ELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAILGN 159 (204)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhhc
Confidence 99999998642 23455555668899999999999987664
No 411
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.72 E-value=1.3e-16 Score=176.71 Aligned_cols=108 Identities=25% Similarity=0.365 Sum_probs=91.1
Q ss_pred HHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeE
Q psy11936 269 EPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEP---TLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTL 342 (548)
Q Consensus 269 ~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P---~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~Tv 342 (548)
-.+..+.|..+||.--.+.++..+|||||.|||-||.-|.... .++||||||.||-..-+..|++.|.++ +.||
T Consensus 799 I~rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTV 878 (935)
T COG0178 799 IARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTV 878 (935)
T ss_pred HHHHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 3455567888899766678999999999999999999999888 999999999999999999988888765 6799
Q ss_pred EEEecCHHHHHhhcCEEEEEe------CCEEEEEcCCHHHHH
Q psy11936 343 LIVSHDQSFLDNVCNEIIHLD------QQKLYYYKGNYSMFK 378 (548)
Q Consensus 343 IiVSHD~~~l~~vadrIi~L~------~G~i~~~~g~y~~f~ 378 (548)
|+|.|+++.+. .||.|+-|- .|+|+. .|+.++..
T Consensus 879 iVIEHNLdVIk-~AD~IIDLGPeGG~~GG~iva-~GTPeeva 918 (935)
T COG0178 879 IVIEHNLDVIK-TADWIIDLGPEGGDGGGEIVA-SGTPEEVA 918 (935)
T ss_pred EEEecccceEe-ecCEEEEcCCCCCCCCceEEE-ecCHHHHH
Confidence 99999999884 699999984 467775 56666544
No 412
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.69 E-value=9.7e-17 Score=186.17 Aligned_cols=102 Identities=24% Similarity=0.330 Sum_probs=89.9
Q ss_pred HHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecC
Q psy11936 274 RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEP--TLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHD 348 (548)
Q Consensus 274 ~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P--~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD 348 (548)
++|..+||....+++++.+|||||+|||+||++|+.+| .||||||||++||+..+.+|.++|+++ +.|||+||||
T Consensus 471 ~~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~ 550 (943)
T PRK00349 471 KFLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHD 550 (943)
T ss_pred HHhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 36888899743368999999999999999999999997 999999999999999999999988764 6799999999
Q ss_pred HHHHHhhcCEEEEE------eCCEEEEEcCCHHHH
Q psy11936 349 QSFLDNVCNEIIHL------DQQKLYYYKGNYSMF 377 (548)
Q Consensus 349 ~~~l~~vadrIi~L------~~G~i~~~~g~y~~f 377 (548)
++++. .||+|++| ++|+++ +.|+++.+
T Consensus 551 ~~~i~-~aD~vi~LgpgaG~~~G~iv-~~g~~~e~ 583 (943)
T PRK00349 551 EDTIR-AADYIVDIGPGAGVHGGEVV-ASGTPEEI 583 (943)
T ss_pred HHHHH-hCCEEEEeccccCCCCCEEe-eccCHHHH
Confidence 99986 69999999 889987 46777665
No 413
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.67 E-value=1.9e-16 Score=154.12 Aligned_cols=52 Identities=23% Similarity=0.217 Sum_probs=39.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHH----HHHHhhcCCeEEEEecCHHHHHhh--cCEEE
Q psy11936 309 IEPTLLLLDEPTNHLDLNAVIWL----DNYLQGWKKTLLIVSHDQSFLDNV--CNEII 360 (548)
Q Consensus 309 ~~P~lLLLDEPTn~LD~~s~~~L----~~~L~~~~~TvIiVSHD~~~l~~v--adrIi 360 (548)
.+|++|||||||++||+.....+ .+.+.+.+.|+|+||||.+++..+ .++|-
T Consensus 104 ~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~ 161 (199)
T cd03283 104 GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADLLDLDSAVR 161 (199)
T ss_pred CCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeE
Confidence 59999999999999999876533 333444578999999999998765 44443
No 414
>KOG0063|consensus
Probab=99.66 E-value=6e-16 Score=160.84 Aligned_cols=174 Identities=26% Similarity=0.344 Sum_probs=121.9
Q ss_pred EeCC-ceeeEeeeEEEECCc-----EEEEECCCCCcHHHHHHHHHcCCCCCCCCe------EEEEeceeeccCchhHHHH
Q psy11936 155 SAKG-NDLFVNANLLIANGR-----RYGLVGPNGHGKTTLLRHIASRDLKVPPNI------DILYCEQEVVADDLTAVES 222 (548)
Q Consensus 155 ~y~~-~~iL~~vsl~I~~Ge-----~igLvGpNGsGKSTLLklLaG~~~~~~~~g------~I~~~~q~i~~~~~~~~~~ 222 (548)
+|.+ +..+.+..|.|..|+ ++..+|.||.|||||+++++|.. .|+.+ .|.|.+|.+.......++.
T Consensus 344 ~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~--~pd~~~e~p~lnVSykpqkispK~~~tvR~ 421 (592)
T KOG0063|consen 344 SYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRL--KPDEGGEIPVLNVSYKPQKISPKREGTVRQ 421 (592)
T ss_pred ccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCC--CCCccCcccccceeccccccCccccchHHH
Confidence 3543 346788899999885 68899999999999999999853 34433 5677777665432222221
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
.+....+ . .+....-+..+++-|.+. ...++.+.+||||+.|||+
T Consensus 422 ll~~kIr-----~-----------------------------ay~~pqF~~dvmkpL~ie-~i~dqevq~lSggelQRva 466 (592)
T KOG0063|consen 422 LLHTKIR-----D-----------------------------AYMHPQFVNDVMKPLQIE-NIIDQEVQGLSGGELQRVA 466 (592)
T ss_pred HHHHHhH-----h-----------------------------hhcCHHHHHhhhhhhhHH-HHHhHHhhcCCchhhHHHH
Confidence 1111000 0 000111223344444444 3567889999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHH----HHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCC
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWL----DNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQ 365 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L----~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G 365 (548)
||.+|-..++++|.|||.+.||.+.+..- .+++...+.|-.+|.||.-.+.-++||+++.+..
T Consensus 467 l~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G~ 533 (592)
T KOG0063|consen 467 LALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQ 533 (592)
T ss_pred HHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecC
Confidence 99999999999999999999999876544 4444455789999999998888889999998743
No 415
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.64 E-value=1.9e-15 Score=148.87 Aligned_cols=77 Identities=22% Similarity=0.274 Sum_probs=56.4
Q ss_pred CCCHHHHHH----HHHHHHH--ccCCCEEEEeCC---CCCCCHHHH-HHHHHHHhhc-CCeEEEEecCHHHHHhhcCEEE
Q psy11936 292 NFSGGWRMR----VSLARAL--YIEPTLLLLDEP---TNHLDLNAV-IWLDNYLQGW-KKTLLIVSHDQSFLDNVCNEII 360 (548)
Q Consensus 292 ~LSGGqkqR----vaLAraL--~~~P~lLLLDEP---Tn~LD~~s~-~~L~~~L~~~-~~TvIiVSHD~~~l~~vadrIi 360 (548)
++|+|+.+. +.|++++ +.+|.++||||| |++||..+. ..+.++|.+. +.++|++||+.++ ..+++++.
T Consensus 85 ~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l-~~l~~~~~ 163 (216)
T cd03284 85 DLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHEL-TELEGKLP 163 (216)
T ss_pred hhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHH-HHHhhcCC
Confidence 345554443 3455555 579999999999 999998764 5567777776 7899999999755 45788876
Q ss_pred EEeCCEEEE
Q psy11936 361 HLDQQKLYY 369 (548)
Q Consensus 361 ~L~~G~i~~ 369 (548)
.+.+|.+..
T Consensus 164 ~v~~~~~~~ 172 (216)
T cd03284 164 RVKNFHVAV 172 (216)
T ss_pred CeEEEEEEE
Confidence 666676654
No 416
>KOG0063|consensus
Probab=99.62 E-value=3.8e-15 Score=154.97 Aligned_cols=93 Identities=23% Similarity=0.359 Sum_probs=78.3
Q ss_pred HHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEec
Q psy11936 271 RARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSH 347 (548)
Q Consensus 271 ~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSH 347 (548)
...+++..+.|. ..+++-+..||||+-||.+||.+.++.+++.++|||.+.||...+......++.+ ..=||+|.|
T Consensus 193 ~~~~~~~~~~L~-~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEH 271 (592)
T KOG0063|consen 193 NKEEVCDQLDLN-NLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEH 271 (592)
T ss_pred cHHHHHHHHHHh-hHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEe
Confidence 345566666775 3568889999999999999999999999999999999999998776655555543 467999999
Q ss_pred CHHHHHhhcCEEEEEeC
Q psy11936 348 DQSFLDNVCNEIIHLDQ 364 (548)
Q Consensus 348 D~~~l~~vadrIi~L~~ 364 (548)
|++.++-+.|-|..|..
T Consensus 272 DLsVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 272 DLSVLDYLSDFICCLYG 288 (592)
T ss_pred echHHHhhhcceeEEec
Confidence 99999999999988863
No 417
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.59 E-value=2.1e-15 Score=144.99 Aligned_cols=79 Identities=19% Similarity=0.207 Sum_probs=54.8
Q ss_pred HhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH----HHHHhh-cCCeEEEEecCHHH
Q psy11936 277 AGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWL----DNYLQG-WKKTLLIVSHDQSF 351 (548)
Q Consensus 277 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L----~~~L~~-~~~TvIiVSHD~~~ 351 (548)
..++..+ ..+...++||+|++|...+++ .+.+|+++|+||||+++|+.....+ .+.+.+ .+.++|++||+.+
T Consensus 47 ~~~~~~d-~~~~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~- 123 (185)
T smart00534 47 TRIGASD-SLAQGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE- 123 (185)
T ss_pred EEeCCCC-chhccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH-
Confidence 3445443 346678899999887433333 2359999999999999999854443 233333 3679999999996
Q ss_pred HHhhcCE
Q psy11936 352 LDNVCNE 358 (548)
Q Consensus 352 l~~vadr 358 (548)
+..+|++
T Consensus 124 l~~~~~~ 130 (185)
T smart00534 124 LTKLADE 130 (185)
T ss_pred HHHHhhc
Confidence 4567774
No 418
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.58 E-value=1.1e-13 Score=158.73 Aligned_cols=150 Identities=22% Similarity=0.232 Sum_probs=93.4
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECC-cEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANG-RRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~G-e~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.|.+.++.+-+-...-+-.+|+++..| ++++|+||||+|||||||+|+|..+ .+..|. .+.......
T Consensus 295 ~i~l~~~rhPll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l-~aq~G~------~Vpa~~~~~----- 362 (771)
T TIGR01069 295 KIILENARHPLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLAL-MFQSGI------PIPANEHSE----- 362 (771)
T ss_pred CEEEccccCceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHH-HHHhCC------CccCCcccc-----
Confidence 366666654221111123478999887 8999999999999999999987411 111110 000000000
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
..++ ..++..+|.. ......+++||+|+++++.|+
T Consensus 363 ------~~~~--------------------------------------d~i~~~i~~~-~si~~~LStfS~~m~~~~~il 397 (771)
T TIGR01069 363 ------IPYF--------------------------------------EEIFADIGDE-QSIEQNLSTFSGHMKNISAIL 397 (771)
T ss_pred ------ccch--------------------------------------hheeeecChH-hHHhhhhhHHHHHHHHHHHHH
Confidence 0000 0001111111 122345778999999999998
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHH----HHHHhhcCCeEEEEecCHHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWL----DNYLQGWKKTLLIVSHDQSFLD 353 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L----~~~L~~~~~TvIiVSHD~~~l~ 353 (548)
+++ .+|.|+|||||++|+|+.....| .+.+...+.++|++||+.++..
T Consensus 398 ~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 398 SKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKA 449 (771)
T ss_pred Hhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence 877 78999999999999999876655 3344455789999999988643
No 419
>KOG0065|consensus
Probab=99.57 E-value=2.3e-15 Score=174.42 Aligned_cols=204 Identities=21% Similarity=0.222 Sum_probs=135.6
Q ss_pred ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCC-CCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHH
Q psy11936 159 NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK-VPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAEC 237 (548)
Q Consensus 159 ~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~-~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~ 237 (548)
..+|+|+|+-+++|+.+.++||.||||||||++|+|.... ....+.|.|+|.+....-... ...+..
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~----------~~aY~~-- 195 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKK----------TVAYNS-- 195 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCc----------eEEecc--
Confidence 3699999999999999999999999999999999996321 222347888887653211100 000000
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHhc----CCCChH----HHHHHHHHhCCCChh----hhhcccCCCCHHHHHHHHHHH
Q psy11936 238 AKLEAADFSSEQQEQLKEIYEELKAI----GADSAE----PRARRILAGLGFSRA----MQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~l~~~----~~~~~~----~~~~~~L~~lgl~~~----~~~~~~~~LSGGqkqRvaLAr 305 (548)
+.......+++.+.+.... ..... ..-... ...+.+|+.+|++.. ..|..+.-.|||||+||.+|-
T Consensus 196 -e~DvH~p~lTVreTldFa~-rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E 273 (1391)
T KOG0065|consen 196 -EQDVHFPELTVRETLDFAA-RCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGE 273 (1391)
T ss_pred -ccccccceeEEeehhhHHH-hccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeee
Confidence 0001111223322222111 11110 000111 135578999999732 234455679999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEec-CHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSH-DQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSH-D~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
+++.++.++.+||+|+|||..+.-.+...|+.. +.|+++.=| =...+-.+.|.|++|.+|.++++ |+.+.-
T Consensus 274 ~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~-Gp~d~~ 349 (1391)
T KOG0065|consen 274 MLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQ-GPRDEV 349 (1391)
T ss_pred eeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEe-ccHHHH
Confidence 999999999999999999999998888888765 345555444 34445567899999999999966 666653
No 420
>PRK00064 recF recombination protein F; Reviewed
Probab=99.55 E-value=6.1e-14 Score=148.48 Aligned_cols=79 Identities=29% Similarity=0.299 Sum_probs=70.9
Q ss_pred ccCCCCHHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhc--C
Q psy11936 289 ATKNFSGGWRMRVSLARALY---------IEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVC--N 357 (548)
Q Consensus 289 ~~~~LSGGqkqRvaLAraL~---------~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~va--d 357 (548)
....+|+||+++++||++|+ .+|+||||||||++||+..+..|.++|..++..++++||+...+..+| +
T Consensus 270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~~~qv~it~~~~~~~~~~~~~~ 349 (361)
T PRK00064 270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGLGAQVFITTTDLEDLADLLENA 349 (361)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhccCCEEEEEcCChhhhhhhhccC
Confidence 44679999999999999986 799999999999999999999999999876779999999998877764 5
Q ss_pred EEEEEeCCEE
Q psy11936 358 EIIHLDQQKL 367 (548)
Q Consensus 358 rIi~L~~G~i 367 (548)
+++.|++|++
T Consensus 350 ~i~~v~~G~i 359 (361)
T PRK00064 350 KIFHVEQGKI 359 (361)
T ss_pred cEEEEeCCEE
Confidence 7999999987
No 421
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.52 E-value=1.1e-13 Score=136.25 Aligned_cols=61 Identities=18% Similarity=0.088 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH-HHHHHHHH---hhc---CCeEEEEecCHHHHHhhc
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNA-VIWLDNYL---QGW---KKTLLIVSHDQSFLDNVC 356 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s-~~~L~~~L---~~~---~~TvIiVSHD~~~l~~va 356 (548)
-+.+|+++|++++.+|.++|||||++++|+.. ...+..++ .+. +.++|++||+.+++..+.
T Consensus 94 ~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 94 IDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred HHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 46799999999999999999999999999853 33323333 322 238999999999987653
No 422
>PRK13695 putative NTPase; Provisional
Probab=99.49 E-value=1.5e-14 Score=137.34 Aligned_cols=83 Identities=14% Similarity=0.156 Sum_probs=72.8
Q ss_pred hhcccCCCCHHHHHHHHHHHHHccCCCEEEEeC--CCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEe
Q psy11936 286 QDRATKNFSGGWRMRVSLARALYIEPTLLLLDE--PTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLD 363 (548)
Q Consensus 286 ~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDE--PTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~ 363 (548)
..+....|||+++-++.+++..+.+|++||||| |+.++|......+.+++ +.+.++|+|+|+. .+..++|+|..+.
T Consensus 72 ~~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~-~~~~~~i~v~h~~-~~~~~~~~i~~~~ 149 (174)
T PRK13695 72 VGKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL-DSEKPVIATLHRR-SVHPFVQEIKSRP 149 (174)
T ss_pred eeeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH-hCCCeEEEEECch-hhHHHHHHHhccC
Confidence 345667899999999999999999999999999 77788988888888888 6789999999995 5557899999999
Q ss_pred CCEEEEE
Q psy11936 364 QQKLYYY 370 (548)
Q Consensus 364 ~G~i~~~ 370 (548)
+|+|+..
T Consensus 150 ~~~i~~~ 156 (174)
T PRK13695 150 GGRVYEL 156 (174)
T ss_pred CcEEEEE
Confidence 9999876
No 423
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.48 E-value=2.9e-13 Score=132.93 Aligned_cols=86 Identities=26% Similarity=0.404 Sum_probs=64.9
Q ss_pred HHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CeEE
Q psy11936 270 PRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARAL----YIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK--KTLL 343 (548)
Q Consensus 270 ~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL----~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~--~TvI 343 (548)
..+...+..+++... .||||||.+++||-.| ..+.+++|||||.++||...+..|.++|.+.. .-+|
T Consensus 121 ~~~~~~l~~~~i~~~-------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~i 193 (220)
T PF02463_consen 121 KDLEELLPEVGISPE-------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFI 193 (220)
T ss_dssp HHHHHHHHCTTTTTT-------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEE
T ss_pred ccccccccccccccc-------cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 345566777776532 8999999999999776 35789999999999999999999999999886 7899
Q ss_pred EEecCHHHHHhhcCEEEEEe
Q psy11936 344 IVSHDQSFLDNVCNEIIHLD 363 (548)
Q Consensus 344 iVSHD~~~l~~vadrIi~L~ 363 (548)
+|||+..++. .||+.+.+.
T Consensus 194 i~Th~~~~~~-~a~~~~~v~ 212 (220)
T PF02463_consen 194 ITTHNPEMFE-DADKLIGVT 212 (220)
T ss_dssp EE-S-HHHHT-T-SEEEEEE
T ss_pred cccccccccc-ccccccccc
Confidence 9999988876 578887653
No 424
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.48 E-value=1.7e-12 Score=149.46 Aligned_cols=76 Identities=18% Similarity=0.154 Sum_probs=61.7
Q ss_pred hhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH----HHHHhhcCCeEEEEecCHHHHHhhcCEEEE
Q psy11936 286 QDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWL----DNYLQGWKKTLLIVSHDQSFLDNVCNEIIH 361 (548)
Q Consensus 286 ~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L----~~~L~~~~~TvIiVSHD~~~l~~vadrIi~ 361 (548)
....+++||+||++++.|++++ .+|.|+|||||++|+|+.....+ .+.+...+.++|++||+.++....+++..+
T Consensus 384 i~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v 462 (782)
T PRK00409 384 IEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGV 462 (782)
T ss_pred hhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCe
Confidence 3456789999999999999998 89999999999999999765444 344455578999999999988777765544
Q ss_pred E
Q psy11936 362 L 362 (548)
Q Consensus 362 L 362 (548)
+
T Consensus 463 ~ 463 (782)
T PRK00409 463 E 463 (782)
T ss_pred E
Confidence 3
No 425
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.46 E-value=1e-12 Score=133.53 Aligned_cols=134 Identities=17% Similarity=0.165 Sum_probs=82.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc-hhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHH
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD-LTAVESVLKADVKRTELLAECAKLEAADFSSEQQE 251 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 251 (548)
.-++|+||||||||||+++|+|. ..+..|++.+.++.+...+ ...+.. ....+++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~--~~~~~G~i~~~g~~v~~~d~~~ei~~-------~~~~~~q--------------- 167 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARI--LSTGISQLGLRGKKVGIVDERSEIAG-------CVNGVPQ--------------- 167 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCc--cCCCCceEEECCEEeecchhHHHHHH-------Hhccccc---------------
Confidence 46899999999999999999985 4678899999988874321 100000 0000000
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH
Q psy11936 252 QLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWL 331 (548)
Q Consensus 252 ~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L 331 (548)
........-|.+=.+....++.+++++|++||||||++. .....+
T Consensus 168 --------------------------------~~~~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~---e~~~~l 212 (270)
T TIGR02858 168 --------------------------------HDVGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGRE---EDVEAL 212 (270)
T ss_pred --------------------------------ccccccccccccchHHHHHHHHHHhCCCCEEEEeCCCcH---HHHHHH
Confidence 000000111111111222344444479999999999854 334444
Q ss_pred HHHHhhcCCeEEEEecCHHH--H-----------HhhcCEEEEEeCCE
Q psy11936 332 DNYLQGWKKTLLIVSHDQSF--L-----------DNVCNEIIHLDQQK 366 (548)
Q Consensus 332 ~~~L~~~~~TvIiVSHD~~~--l-----------~~vadrIi~L~~G~ 366 (548)
.+.+. .+.|+|++||+... + ..+++|+++|++|+
T Consensus 213 ~~~~~-~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~ 259 (270)
T TIGR02858 213 LEALH-AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK 259 (270)
T ss_pred HHHHh-CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC
Confidence 44444 47899999998766 4 25689999999765
No 426
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.40 E-value=3.6e-12 Score=126.08 Aligned_cols=36 Identities=25% Similarity=0.312 Sum_probs=34.3
Q ss_pred ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 159 NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 159 ~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
..+.+|++|.+..|++++|+||||+||||||++|++
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999999999999999987
No 427
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.35 E-value=1.4e-11 Score=123.88 Aligned_cols=75 Identities=17% Similarity=0.108 Sum_probs=62.4
Q ss_pred CCCCHHH--------HHHHHHHHHHccCCCEEEEeCCCCCCCHHHH-H-HHHHHHhhcCCeEEEEecCHHHHHhhcCEEE
Q psy11936 291 KNFSGGW--------RMRVSLARALYIEPTLLLLDEPTNHLDLNAV-I-WLDNYLQGWKKTLLIVSHDQSFLDNVCNEII 360 (548)
Q Consensus 291 ~~LSGGq--------kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~-~-~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi 360 (548)
..+|||+ +||+++||++..+++|++| ||+.+|..+. . -+.+.++....|.|++||++.... ..+.|.
T Consensus 128 ~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i~~~~~~~~~~~ivls~~la~~~-~~paI~ 204 (249)
T cd01128 128 KILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVIFEEFKGTGNMELVLDRRLAERR-IFPAID 204 (249)
T ss_pred CCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchHHHHHhcCCCcEEEEchHHhhCC-CCCeEE
Confidence 3479999 9999999999999999999 9999995322 2 345556555689999999999885 589999
Q ss_pred EEeCCEEE
Q psy11936 361 HLDQQKLY 368 (548)
Q Consensus 361 ~L~~G~i~ 368 (548)
+|+.|.++
T Consensus 205 vl~s~sr~ 212 (249)
T cd01128 205 ILKSGTRK 212 (249)
T ss_pred EcCCCCcc
Confidence 99999974
No 428
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.35 E-value=2e-12 Score=154.10 Aligned_cols=81 Identities=25% Similarity=0.260 Sum_probs=73.1
Q ss_pred hhhcccCCCCHHHHHHHHHHHHHcc----------CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHH
Q psy11936 285 MQDRATKNFSGGWRMRVSLARALYI----------EPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSF 351 (548)
Q Consensus 285 ~~~~~~~~LSGGqkqRvaLAraL~~----------~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~ 351 (548)
..++++.+|||||++||+||+||+. +|++|||||||++||+.+...+.+.|..+ +.+|+||||+.++
T Consensus 943 ~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~ 1022 (1042)
T TIGR00618 943 GSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEF 1022 (1042)
T ss_pred CCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHH
Confidence 3467899999999999999999986 79999999999999999999888888654 5799999999999
Q ss_pred HHhhcCEEEEEeCC
Q psy11936 352 LDNVCNEIIHLDQQ 365 (548)
Q Consensus 352 l~~vadrIi~L~~G 365 (548)
...+|++|+|+..+
T Consensus 1023 ~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1023 RERIPHRILVKKTN 1036 (1042)
T ss_pred HHhhCCEEEEEECC
Confidence 99999999999754
No 429
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.33 E-value=2.6e-12 Score=143.34 Aligned_cols=80 Identities=21% Similarity=0.326 Sum_probs=69.7
Q ss_pred cccCCCCHHHHHHHHHHHHHc----------cCCCEEEEeCCC-CCCCHHHHHHHHHHHhhc-CCeEEEEecCHHHHHhh
Q psy11936 288 RATKNFSGGWRMRVSLARALY----------IEPTLLLLDEPT-NHLDLNAVIWLDNYLQGW-KKTLLIVSHDQSFLDNV 355 (548)
Q Consensus 288 ~~~~~LSGGqkqRvaLAraL~----------~~P~lLLLDEPT-n~LD~~s~~~L~~~L~~~-~~TvIiVSHD~~~l~~v 355 (548)
.++.+|||||+||++||+||+ .+|++||||||| ++||+.+...+.++|..+ +.|||+|||+..+. ..
T Consensus 464 ~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~~~~~iiiish~~~~~-~~ 542 (562)
T PHA02562 464 FSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSLKDTNVFVISHKDHDP-QK 542 (562)
T ss_pred cChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhCCCCeEEEEECchhch-hh
Confidence 356899999999999999987 599999999998 789999999999999886 45999999997766 56
Q ss_pred cCEEEEEeC-CEEE
Q psy11936 356 CNEIIHLDQ-QKLY 368 (548)
Q Consensus 356 adrIi~L~~-G~i~ 368 (548)
||++++|.+ |+..
T Consensus 543 ~d~~~~l~~~~~~~ 556 (562)
T PHA02562 543 FDRHLKMEKVGRFS 556 (562)
T ss_pred hhcEEEEEEECCee
Confidence 999999986 5543
No 430
>PRK01156 chromosome segregation protein; Provisional
Probab=99.33 E-value=7.3e-12 Score=147.26 Aligned_cols=75 Identities=25% Similarity=0.429 Sum_probs=66.1
Q ss_pred cccCCCCHHHHHHHHH------HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cC--CeEEEEecCHHHHHhh
Q psy11936 288 RATKNFSGGWRMRVSL------ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG----WK--KTLLIVSHDQSFLDNV 355 (548)
Q Consensus 288 ~~~~~LSGGqkqRvaL------AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~----~~--~TvIiVSHD~~~l~~v 355 (548)
.++..|||||++||+| |++|+.+|++|||||||+|||+....+|.++|.. .+ .|||+||||+.++ .+
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~-~~ 875 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELL-SV 875 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHH-Hh
Confidence 4688999999999975 5999999999999999999999999998887753 22 3899999999988 58
Q ss_pred cCEEEEEe
Q psy11936 356 CNEIIHLD 363 (548)
Q Consensus 356 adrIi~L~ 363 (548)
||+|+.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999997
No 431
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.33 E-value=3.4e-12 Score=142.71 Aligned_cols=75 Identities=21% Similarity=0.220 Sum_probs=67.8
Q ss_pred CCCCHHHHHHHHHHHHHccC----CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeC
Q psy11936 291 KNFSGGWRMRVSLARALYIE----PTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQ 364 (548)
Q Consensus 291 ~~LSGGqkqRvaLAraL~~~----P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~ 364 (548)
..|||||++||+||++++.. |++|||||||++||+.+...+.++|..+ +.|||+|||++.++. +||++++|++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~-~ad~~~~l~k 517 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAA-HADAHFKVEK 517 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHH-hcCeEEEEEE
Confidence 46899999999999999985 6999999999999999999999988875 579999999999885 8999999987
Q ss_pred CE
Q psy11936 365 QK 366 (548)
Q Consensus 365 G~ 366 (548)
|.
T Consensus 518 ~~ 519 (563)
T TIGR00634 518 EG 519 (563)
T ss_pred cc
Confidence 54
No 432
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.31 E-value=1.9e-11 Score=121.72 Aligned_cols=71 Identities=20% Similarity=0.281 Sum_probs=48.8
Q ss_pred CCCHHHHHHHHHHHHHcc----CCCEEEEeCCCCCC----CHHHHHHHHHHHhhc---CCeEEEEecCHHHH--------
Q psy11936 292 NFSGGWRMRVSLARALYI----EPTLLLLDEPTNHL----DLNAVIWLDNYLQGW---KKTLLIVSHDQSFL-------- 352 (548)
Q Consensus 292 ~LSGGqkqRvaLAraL~~----~P~lLLLDEPTn~L----D~~s~~~L~~~L~~~---~~TvIiVSHD~~~l-------- 352 (548)
.+|++..++..+++.+-. +|+++++||||+++ |+.....+.++++.+ +. ++++||+...+
T Consensus 95 ~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~-tvi~t~~~~~~~~~~~~~~ 173 (230)
T PRK08533 95 LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNK-VIILTANPKELDESVLTIL 173 (230)
T ss_pred cccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCC-EEEEEecccccccccceeE
Confidence 367776666666655544 69999999999999 777777777777643 44 55557776543
Q ss_pred HhhcCEEEEEe
Q psy11936 353 DNVCNEIIHLD 363 (548)
Q Consensus 353 ~~vadrIi~L~ 363 (548)
..+||-|+.|+
T Consensus 174 ~~~~DgvI~L~ 184 (230)
T PRK08533 174 RTAATMLIRLE 184 (230)
T ss_pred EEeeeEEEEEE
Confidence 34567777665
No 433
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.29 E-value=1.2e-11 Score=137.85 Aligned_cols=103 Identities=23% Similarity=0.333 Sum_probs=83.7
Q ss_pred HHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHh---hcCCeEEEEecCH
Q psy11936 275 ILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEP--TLLLLDEPTNHLDLNAVIWLDNYLQ---GWKKTLLIVSHDQ 349 (548)
Q Consensus 275 ~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P--~lLLLDEPTn~LD~~s~~~L~~~L~---~~~~TvIiVSHD~ 349 (548)
.|-.+||.---++|...+|||||.||+.||.-+-+.= =+++||||+-||-+.--+.|.+.|+ +.+.|+|+|.||.
T Consensus 464 fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe 543 (935)
T COG0178 464 FLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE 543 (935)
T ss_pred HHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH
Confidence 3555688755678999999999999999999997654 4889999999999987777776665 4578999999999
Q ss_pred HHHHhhcCEEEEEe------CCEEEEEcCCHHHHHH
Q psy11936 350 SFLDNVCNEIIHLD------QQKLYYYKGNYSMFKK 379 (548)
Q Consensus 350 ~~l~~vadrIi~L~------~G~i~~~~g~y~~f~~ 379 (548)
+.+. .||+|+-|- .|.|+ +.|+++++.+
T Consensus 544 dti~-~AD~iIDiGPgAG~~GGeIv-~~Gtp~~i~~ 577 (935)
T COG0178 544 DTIR-AADHIIDIGPGAGEHGGEIV-AEGTPEELLA 577 (935)
T ss_pred HHHh-hcCEEEeeCCCCCcCCCEEE-EccCHHHHHh
Confidence 9885 599999984 45666 6799887643
No 434
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.28 E-value=2.2e-11 Score=119.16 Aligned_cols=50 Identities=24% Similarity=0.204 Sum_probs=44.7
Q ss_pred ccCCCCHH--HHHHHHHHHHHccCCCEEEEeCCC-----CCCCHHHHHHHHHHHhhc
Q psy11936 289 ATKNFSGG--WRMRVSLARALYIEPTLLLLDEPT-----NHLDLNAVIWLDNYLQGW 338 (548)
Q Consensus 289 ~~~~LSGG--qkqRvaLAraL~~~P~lLLLDEPT-----n~LD~~s~~~L~~~L~~~ 338 (548)
.++.+||+ +++++.||++++.+|++++||||| ++||+.++..+.+++.++
T Consensus 147 e~Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~ 203 (215)
T PTZ00132 147 DISAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAA 203 (215)
T ss_pred EEeCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence 34556665 999999999999999999999999 999999999999999875
No 435
>PRK03918 chromosome segregation protein; Provisional
Probab=99.27 E-value=8.6e-12 Score=146.28 Aligned_cols=76 Identities=32% Similarity=0.460 Sum_probs=66.6
Q ss_pred hcccCCCCHHHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcC
Q psy11936 287 DRATKNFSGGWRM------RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCN 357 (548)
Q Consensus 287 ~~~~~~LSGGqkq------RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vad 357 (548)
+.++..|||||++ |++||++|+.+|++|||||||++||+..+..+.++|..+ +.|||+||||++++ .+||
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~-~~~d 861 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELK-DAAD 861 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH-HhCC
Confidence 3678899999999 556667888999999999999999999999999888764 36899999999876 5799
Q ss_pred EEEEEe
Q psy11936 358 EIIHLD 363 (548)
Q Consensus 358 rIi~L~ 363 (548)
+|++|.
T Consensus 862 ~~~~l~ 867 (880)
T PRK03918 862 YVIRVS 867 (880)
T ss_pred eEEEEE
Confidence 999997
No 436
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.27 E-value=2.5e-11 Score=115.58 Aligned_cols=78 Identities=13% Similarity=0.136 Sum_probs=61.7
Q ss_pred hhcccCCCCHHHHH------HHHHHHHHccCCCEEEEeCCCCCCC---HHHHHHHHH---HHhhcCCeEEEEecCHHH--
Q psy11936 286 QDRATKNFSGGWRM------RVSLARALYIEPTLLLLDEPTNHLD---LNAVIWLDN---YLQGWKKTLLIVSHDQSF-- 351 (548)
Q Consensus 286 ~~~~~~~LSGGqkq------RvaLAraL~~~P~lLLLDEPTn~LD---~~s~~~L~~---~L~~~~~TvIiVSHD~~~-- 351 (548)
.+..+..+|+|+.+ ....+.+...+|+++++||||+.+| ......+.+ .++..+.|+|+|+|+...
T Consensus 65 ~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~ 144 (187)
T cd01124 65 VDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEG 144 (187)
T ss_pred EecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCC
Confidence 45677889999998 5555666778999999999999999 655554444 445567899999998775
Q ss_pred -------HHhhcCEEEEEe
Q psy11936 352 -------LDNVCNEIIHLD 363 (548)
Q Consensus 352 -------l~~vadrIi~L~ 363 (548)
+..+||.|+.|+
T Consensus 145 ~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 145 TGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred cccCcCceeEeeeEEEEEE
Confidence 678899999987
No 437
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.25 E-value=8.3e-11 Score=116.12 Aligned_cols=134 Identities=20% Similarity=0.204 Sum_probs=83.7
Q ss_pred CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCC------CCCCC-CeEEEEeceeeccCchhHHHHHHHhhHH
Q psy11936 157 KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRD------LKVPP-NIDILYCEQEVVADDLTAVESVLKADVK 229 (548)
Q Consensus 157 ~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~------~~~~~-~g~I~~~~q~i~~~~~~~~~~~~~~~~~ 229 (548)
++..+-+|++|++.+|++++|+||||+||||||++|++.. .+.|. ..++.+.++-
T Consensus 15 ~~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i------------------ 76 (218)
T cd03286 15 ASSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRI------------------ 76 (218)
T ss_pred CCCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEE------------------
Confidence 3457899999999999999999999999999999997531 11111 1111111110
Q ss_pred HHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHcc
Q psy11936 230 RTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYI 309 (548)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~ 309 (548)
+..++-.+.. ....++++ .+-++++-....+.
T Consensus 77 ----------------------------------------------~~~~~~~d~~-~~~~StF~-~e~~~~~~il~~~~ 108 (218)
T cd03286 77 ----------------------------------------------FTRIGARDDI-MKGESTFM-VELSETANILRHAT 108 (218)
T ss_pred ----------------------------------------------EEecCccccc-ccCcchHH-HHHHHHHHHHHhCC
Confidence 0111111000 00011111 34444544444567
Q ss_pred CCCEEEEeCCCCCCCHHHHH---H-HHHHHhhc-CCeEEEEecCHHHHHhhc
Q psy11936 310 EPTLLLLDEPTNHLDLNAVI---W-LDNYLQGW-KKTLLIVSHDQSFLDNVC 356 (548)
Q Consensus 310 ~P~lLLLDEPTn~LD~~s~~---~-L~~~L~~~-~~TvIiVSHD~~~l~~va 356 (548)
+|.++|||||+.|+|+.... + +.++|.+. +.++|++||+.+++..++
T Consensus 109 ~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 109 PDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFH 160 (218)
T ss_pred CCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhh
Confidence 89999999999888875432 2 24455554 789999999999988775
No 438
>PRK10869 recombination and repair protein; Provisional
Probab=99.25 E-value=1.8e-11 Score=136.21 Aligned_cols=74 Identities=18% Similarity=0.215 Sum_probs=66.7
Q ss_pred CCCHHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCC
Q psy11936 292 NFSGGWRMRVSLARALYI----EPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQ 365 (548)
Q Consensus 292 ~LSGGqkqRvaLAraL~~----~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G 365 (548)
.|||||++||+||++++. +|++|||||||++||..+...+.+.|... +.+||+|||++..+ .+||+++.+..+
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~-~~ad~~~~v~k~ 508 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVA-GCGHQHFFVSKE 508 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEecc
Confidence 479999999999999997 68999999999999999999999999876 36999999999877 689999999864
Q ss_pred E
Q psy11936 366 K 366 (548)
Q Consensus 366 ~ 366 (548)
.
T Consensus 509 ~ 509 (553)
T PRK10869 509 T 509 (553)
T ss_pred c
Confidence 3
No 439
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.22 E-value=1.5e-11 Score=149.44 Aligned_cols=69 Identities=28% Similarity=0.457 Sum_probs=62.3
Q ss_pred ccCCCCHHHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--------CCeEEEEecCHHHHHh
Q psy11936 289 ATKNFSGGWRM------RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--------KKTLLIVSHDQSFLDN 354 (548)
Q Consensus 289 ~~~~LSGGqkq------RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--------~~TvIiVSHD~~~l~~ 354 (548)
..+.|||||+| |++||+||+.+|+||||||||++||+.+..+|...|..+ +.||||||||+.|+..
T Consensus 1196 ~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~ 1275 (1311)
T TIGR00606 1196 MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVEL 1275 (1311)
T ss_pred CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHH
Confidence 44789999999 999999999999999999999999999999888777653 5699999999999998
Q ss_pred hcC
Q psy11936 355 VCN 357 (548)
Q Consensus 355 vad 357 (548)
+|.
T Consensus 1276 ~~~ 1278 (1311)
T TIGR00606 1276 LGR 1278 (1311)
T ss_pred Hhh
Confidence 864
No 440
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.20 E-value=1.8e-10 Score=124.39 Aligned_cols=179 Identities=18% Similarity=0.182 Sum_probs=96.4
Q ss_pred CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHH
Q psy11936 158 GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAEC 237 (548)
Q Consensus 158 ~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~ 237 (548)
+..+++++ |.|.+|++++|+|+||+|||||+++|+|. ..+..+.|.+.|+.-. + +..+......... +...
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~--~~~~~gvI~~~Gerg~--e---v~e~~~~~l~~~~-l~r~ 215 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARN--TSADLNVIALIGERGR--E---VREFIERDLGPEG-LKRS 215 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcc--cCCCeEEEEEEecCCc--c---HHHHHHhhcChhh-hcCe
Confidence 44689999 99999999999999999999999999984 3566677776655321 1 1111000000000 0000
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEe
Q psy11936 238 AKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLD 317 (548)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLD 317 (548)
..+.+ ..+......+.. .+ .--.+.+.+..-|-+-- -.+.+|+ |. |+|+-. =-|.+.
T Consensus 216 v~vv~-~~~~~~~~r~~~---------~~-~a~~iAEyfr~~g~~Vl---l~~Dslt-----r~--A~A~rE--isl~~g 272 (438)
T PRK07721 216 IVVVA-TSDQPALMRIKG---------AY-TATAIAEYFRDQGLNVM---LMMDSVT-----RV--AMAQRE--IGLAVG 272 (438)
T ss_pred EEEEE-CCCCCHHHHHHH---------HH-HHHHHHHHHHHCCCcEE---EEEeChH-----HH--HHHHHH--HHHhcC
Confidence 00000 000001100000 00 11112222322232100 0011121 11 111100 001223
Q ss_pred CC--CCCCCHHHHHHHHHHHhhcC----C------eEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 318 EP--TNHLDLNAVIWLDNYLQGWK----K------TLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 318 EP--Tn~LD~~s~~~L~~~L~~~~----~------TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|| |+|+|+.....+.+++.+.+ + ||++.|||++. .+||++..|.+|+++..
T Consensus 273 e~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e--~i~d~v~~i~dG~Ivls 335 (438)
T PRK07721 273 EPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE--PIADTVRGILDGHFVLD 335 (438)
T ss_pred CCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc--hhhhhEEEecCEEEEEe
Confidence 64 78999999998888887653 3 89999999984 79999999999999865
No 441
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.17 E-value=1.1e-10 Score=125.25 Aligned_cols=162 Identities=22% Similarity=0.191 Sum_probs=107.1
Q ss_pred EEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 147 IKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 147 I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
++...++..|. +..+++. .|.+.+|++++|+|+||+|||||+++|++. ..+..+.|.+.++... .+..+
T Consensus 131 ~~r~~i~~~l~TGiraID~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~--~~~~~gvI~~iGerg~-----ev~e~-- 200 (432)
T PRK06793 131 FEREEITDVFETGIKSIDS-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKN--AKADINVISLVGERGR-----EVKDF-- 200 (432)
T ss_pred hheechhhccCCCCEEEec-cceecCCcEEEEECCCCCChHHHHHHHhcc--CCCCeEEEEeCCCCcc-----cHHHH--
Confidence 55566776674 4567777 499999999999999999999999999985 3455666665554321 00000
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
+ ...+..-|+.....=....+.|.|+|.|++.+.
T Consensus 201 --------~--------------------------------------~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a 234 (432)
T PRK06793 201 --------I--------------------------------------RKELGEEGMRKSVVVVATSDESHLMQLRAAKLA 234 (432)
T ss_pred --------H--------------------------------------HHHhhhcccceeEEEEECCCCCHHHHHHHHHHH
Confidence 0 001111122111112345788999999999999
Q ss_pred HHc-------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 306 ALY-------IEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 306 aL~-------~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
+.+ .++-+||+|+||++.|+. .++...+.+. +.+..+.||-..++++ +-.+..|.|+.+
T Consensus 235 ~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ER----ag~~~~GSiT~~ 303 (432)
T PRK06793 235 TSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLER----SGKTQKGSITGI 303 (432)
T ss_pred HHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHH----hccCCCcceEEE
Confidence 988 789999999999999997 3333344443 3577777885555544 333567877543
No 442
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.17 E-value=6.5e-11 Score=140.90 Aligned_cols=78 Identities=29% Similarity=0.277 Sum_probs=71.0
Q ss_pred hcccCCCCHHHHHHHHHHHHHcc--------CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhh
Q psy11936 287 DRATKNFSGGWRMRVSLARALYI--------EPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNV 355 (548)
Q Consensus 287 ~~~~~~LSGGqkqRvaLAraL~~--------~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~v 355 (548)
.+++.+|||||+++|+||+||+. +|++|||||||++||+.+...+.+.|..+ +.||+||||...+.+++
T Consensus 944 ~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i 1023 (1047)
T PRK10246 944 VRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERI 1023 (1047)
T ss_pred CCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhc
Confidence 47899999999999999999996 89999999999999999999888888654 57999999999999999
Q ss_pred cCEEEEEeC
Q psy11936 356 CNEIIHLDQ 364 (548)
Q Consensus 356 adrIi~L~~ 364 (548)
..+|.|-..
T Consensus 1024 ~~qi~V~k~ 1032 (1047)
T PRK10246 1024 PVQIKVKKI 1032 (1047)
T ss_pred cceEEEEEC
Confidence 999888764
No 443
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.11 E-value=9.1e-11 Score=140.77 Aligned_cols=77 Identities=19% Similarity=0.348 Sum_probs=67.8
Q ss_pred hhcccCCCCHHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEE
Q psy11936 286 QDRATKNFSGGWRMRVSLARALY----IEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEI 359 (548)
Q Consensus 286 ~~~~~~~LSGGqkqRvaLAraL~----~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrI 359 (548)
.+.++..|||||++|++||++|+ .+|+++||||||++||+.++..|.++|..+ +.+||||||++.++ .+||++
T Consensus 1083 ~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~-~~~d~~ 1161 (1179)
T TIGR02168 1083 KNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTM-EVADQL 1161 (1179)
T ss_pred ccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHH-HHhhhH
Confidence 45688899999999999999984 678999999999999999999999988775 36899999999987 579999
Q ss_pred EEEe
Q psy11936 360 IHLD 363 (548)
Q Consensus 360 i~L~ 363 (548)
+.+.
T Consensus 1162 ~~~~ 1165 (1179)
T TIGR02168 1162 YGVT 1165 (1179)
T ss_pred eeee
Confidence 7653
No 444
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.06 E-value=2e-09 Score=102.13 Aligned_cols=86 Identities=17% Similarity=0.236 Sum_probs=66.5
Q ss_pred cccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeC
Q psy11936 288 RATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQ 364 (548)
Q Consensus 288 ~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~ 364 (548)
+.....|-||----.+.+.+ .+--|+|||||-++|.+.-+..|...|.++ +.-|||+||..-++.-=.-+|+.++.
T Consensus 125 ~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~ 203 (233)
T COG3910 125 RSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISE 203 (233)
T ss_pred cchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEec
Confidence 44567899997665555554 567899999999999999988888887765 56899999998877654668999988
Q ss_pred CEEEEEcCCHHH
Q psy11936 365 QKLYYYKGNYSM 376 (548)
Q Consensus 365 G~i~~~~g~y~~ 376 (548)
+.+.. -+|++
T Consensus 204 ~g~~~--~~fe~ 213 (233)
T COG3910 204 SGIEE--RDFEE 213 (233)
T ss_pred CCccc--cchHH
Confidence 87643 45554
No 445
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.05 E-value=2.3e-09 Score=124.64 Aligned_cols=62 Identities=18% Similarity=0.136 Sum_probs=53.2
Q ss_pred ccCCCEEEEeCCCCCC-CHHHHHHHHHHHhh---cCCeEEEEecCHHHHH---------hhcCEEEEEeCCEEEE
Q psy11936 308 YIEPTLLLLDEPTNHL-DLNAVIWLDNYLQG---WKKTLLIVSHDQSFLD---------NVCNEIIHLDQQKLYY 369 (548)
Q Consensus 308 ~~~P~lLLLDEPTn~L-D~~s~~~L~~~L~~---~~~TvIiVSHD~~~l~---------~vadrIi~L~~G~i~~ 369 (548)
..+|.++|+|||+.+| |+.....+.++++. .++++|++||+++.+. ..|+++++|.+|++..
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~ 724 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAARE 724 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccc
Confidence 5799999999999999 68888888877764 4689999999999885 4799999999998753
No 446
>PRK02224 chromosome segregation protein; Provisional
Probab=99.01 E-value=4.8e-10 Score=131.73 Aligned_cols=76 Identities=29% Similarity=0.539 Sum_probs=65.5
Q ss_pred ccCCCCHHHHH------HHHHHHHHccC-----C-CEEEEeCCCCCCCHHHHHHHHHHHhhcC----CeEEEEecCHHHH
Q psy11936 289 ATKNFSGGWRM------RVSLARALYIE-----P-TLLLLDEPTNHLDLNAVIWLDNYLQGWK----KTLLIVSHDQSFL 352 (548)
Q Consensus 289 ~~~~LSGGqkq------RvaLAraL~~~-----P-~lLLLDEPTn~LD~~s~~~L~~~L~~~~----~TvIiVSHD~~~l 352 (548)
++..|||||++ |++||++++.. | +++||||||++||+..+.++.++|..+. .+|||||||..++
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~ 857 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELV 857 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHH
Confidence 46799999999 99999999864 2 6799999999999999999998887652 3799999999999
Q ss_pred HhhcCEEEEEeCC
Q psy11936 353 DNVCNEIIHLDQQ 365 (548)
Q Consensus 353 ~~vadrIi~L~~G 365 (548)
. .||+++.|...
T Consensus 858 ~-~ad~~~~~~~~ 869 (880)
T PRK02224 858 G-AADDLVRVEKD 869 (880)
T ss_pred H-hcCeeEEeecC
Confidence 5 69999999643
No 447
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.00 E-value=5.8e-10 Score=134.09 Aligned_cols=76 Identities=17% Similarity=0.218 Sum_probs=67.9
Q ss_pred hcccCCCCHHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEE
Q psy11936 287 DRATKNFSGGWRMRVSLARALYI----EPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEII 360 (548)
Q Consensus 287 ~~~~~~LSGGqkqRvaLAraL~~----~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi 360 (548)
.+++..|||||+++++||++|+. +|+++||||||++||+..+..+..+|..+ +.++|||||+..++ .+||+++
T Consensus 1069 ~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~-~~~d~~~ 1147 (1164)
T TIGR02169 1069 VQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMI-EYADRAI 1147 (1164)
T ss_pred CCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHH-HhcceeE
Confidence 45678999999999999999984 78999999999999999999999999876 36899999999876 6899998
Q ss_pred EEe
Q psy11936 361 HLD 363 (548)
Q Consensus 361 ~L~ 363 (548)
.+.
T Consensus 1148 ~~~ 1150 (1164)
T TIGR02169 1148 GVT 1150 (1164)
T ss_pred eEE
Confidence 775
No 448
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.99 E-value=8.4e-10 Score=101.35 Aligned_cols=61 Identities=13% Similarity=-0.100 Sum_probs=45.0
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCC----------CHHHHHHHHH---HHhhcCCeEEEEecCHHHH
Q psy11936 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHL----------DLNAVIWLDN---YLQGWKKTLLIVSHDQSFL 352 (548)
Q Consensus 292 ~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~L----------D~~s~~~L~~---~L~~~~~TvIiVSHD~~~l 352 (548)
..+.+...+++.+++...+|+++++|||++.+ |......+.. .+++.+.|+|+|+|.....
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 44566667889999999999999999999654 4433444444 4445678999999987554
No 449
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.95 E-value=5.1e-09 Score=104.16 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=52.5
Q ss_pred CCCCHHHHHHHHHHHHHcc--CCCEEEEeCCCCC---CCHHHHHHHHHHH---hhcCCeEEEEecCHHH-------HHhh
Q psy11936 291 KNFSGGWRMRVSLARALYI--EPTLLLLDEPTNH---LDLNAVIWLDNYL---QGWKKTLLIVSHDQSF-------LDNV 355 (548)
Q Consensus 291 ~~LSGGqkqRvaLAraL~~--~P~lLLLDEPTn~---LD~~s~~~L~~~L---~~~~~TvIiVSHD~~~-------l~~v 355 (548)
...|.++.+.+.++..++. +|+++++||||+. +|......+...+ ...+.|+|+++|+..+ +..+
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l 178 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSI 178 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhh
Confidence 3457788999999999887 9999999999964 4455555554444 4457899999998765 3445
Q ss_pred cCEEEEEe
Q psy11936 356 CNEIIHLD 363 (548)
Q Consensus 356 adrIi~L~ 363 (548)
||-++.|+
T Consensus 179 ~DgvI~L~ 186 (234)
T PRK06067 179 CDVYLKLR 186 (234)
T ss_pred eEEEEEEE
Confidence 55555554
No 450
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.85 E-value=4.1e-09 Score=92.35 Aligned_cols=46 Identities=13% Similarity=0.073 Sum_probs=40.0
Q ss_pred ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee
Q psy11936 159 NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV 212 (548)
Q Consensus 159 ~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i 212 (548)
..+|++++|++.+|++++|+||||||||||+++|. +|.+.+.+.++
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~--------~G~i~~~g~di 47 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI--------KRKHRLVGDDN 47 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh--------CCeEEEeeEeH
Confidence 56899999999999999999999999999999986 45676766654
No 451
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.83 E-value=3.5e-09 Score=109.95 Aligned_cols=72 Identities=11% Similarity=0.038 Sum_probs=50.7
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
-.++.+|-++|++|++|||.. .+... +.+.+..-..++|.++|..+.. ..++|++.|..|++...+-+.+.+
T Consensus 209 ~~l~~~Lr~~pd~ii~gE~r~---~e~~~-~l~a~~~g~~~~i~T~Ha~~~~-~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 209 DLLQSCLRMRPDRIILGELRG---DEAFD-FIRAVNTGHPGSITTLHAGSPE-EAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHhcCCCCeEEEeccCC---HHHHH-HHHHHhcCCCeEEEEEeCCCHH-HHHHHHHHHhhccccccCCCHHHH
Confidence 367788999999999999996 33333 2333332224679999999854 568999999888887665555443
No 452
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.80 E-value=2.5e-08 Score=116.41 Aligned_cols=68 Identities=24% Similarity=0.259 Sum_probs=52.0
Q ss_pred cCCCCHHHHHHHHHHHHHcc--CCCEEEEeCC---CCCCCHHHHHH-HHHHHhhc-CCeEEEEecCHHHHHhhcCE
Q psy11936 290 TKNFSGGWRMRVSLARALYI--EPTLLLLDEP---TNHLDLNAVIW-LDNYLQGW-KKTLLIVSHDQSFLDNVCNE 358 (548)
Q Consensus 290 ~~~LSGGqkqRvaLAraL~~--~P~lLLLDEP---Tn~LD~~s~~~-L~~~L~~~-~~TvIiVSHD~~~l~~vadr 358 (548)
...+|--+.-...++.+|-. ++.|+||||| |+.+|-.+..| +.++|.+. +.++|++||+.+.. .++++
T Consensus 664 ~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l~aTH~~el~-~l~~~ 738 (854)
T PRK05399 664 ASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTLFATHYHELT-ELEEK 738 (854)
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEEEEechHHHH-HHhhh
Confidence 34577777777777777755 9999999999 99999877655 77777766 47899999995544 56654
No 453
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.78 E-value=1.6e-08 Score=119.40 Aligned_cols=76 Identities=32% Similarity=0.410 Sum_probs=64.8
Q ss_pred cccCCCCHHHHHHHHHHHHHc------cC--CCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhc
Q psy11936 288 RATKNFSGGWRMRVSLARALY------IE--PTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVC 356 (548)
Q Consensus 288 ~~~~~LSGGqkqRvaLAraL~------~~--P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~va 356 (548)
+++.+|||||+-.++||-+|+ .+ -++|+|||||.+||+.++..+.+.|... +.+|||||||.+|.+ .+
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e-~~ 889 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKE-RA 889 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHH-hC
Confidence 688999999999887777654 55 7999999999999999999988888764 479999999999986 48
Q ss_pred CEEEEEeC
Q psy11936 357 NEIIHLDQ 364 (548)
Q Consensus 357 drIi~L~~ 364 (548)
|+++.+..
T Consensus 890 ~~~i~V~k 897 (908)
T COG0419 890 DVRIRVKK 897 (908)
T ss_pred CeEEEEEe
Confidence 88888763
No 454
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.77 E-value=1.5e-08 Score=107.65 Aligned_cols=63 Identities=25% Similarity=0.225 Sum_probs=58.5
Q ss_pred CCCCHHHHHHHHHHHHHcc---------CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHH
Q psy11936 291 KNFSGGWRMRVSLARALYI---------EPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLD 353 (548)
Q Consensus 291 ~~LSGGqkqRvaLAraL~~---------~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~ 353 (548)
..+|.||+++++||.+|+. +|+|||||||+++||+..+..|.++|...+.+|+++||+...+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSLGVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhcCCEEEEEecChhhcc
Confidence 4689999999999999999 99999999999999999999999999776679999999987765
No 455
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.75 E-value=6e-09 Score=104.32 Aligned_cols=77 Identities=21% Similarity=0.248 Sum_probs=65.2
Q ss_pred CCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee--------ccceeeeee
Q psy11936 464 PPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG--------LHNVTFAYE 530 (548)
Q Consensus 464 ~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~--------~~n~~~~y~ 530 (548)
.+.|+++||++.|++. ++|+||||.. .|.-+.|.||| |||+|+|+|.++|++|+|.. .-+.+|+|+
T Consensus 2 ~~~i~v~nl~v~y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYV 80 (254)
T COG1121 2 MPMIEVENLTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYV 80 (254)
T ss_pred CcEEEEeeeEEEECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEc
Confidence 3679999999999764 7999999975 88999999997 99999999999999999883 224899999
Q ss_pred eccceeeeccCc
Q psy11936 531 GMKPLLVDVRKP 542 (548)
Q Consensus 531 ~~~~~~~~~~~~ 542 (548)
.|+. -+|-.-|
T Consensus 81 PQ~~-~~d~~fP 91 (254)
T COG1121 81 PQKS-SVDRSFP 91 (254)
T ss_pred Cccc-ccCCCCC
Confidence 9987 5665444
No 456
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.72 E-value=4.4e-08 Score=95.29 Aligned_cols=56 Identities=21% Similarity=0.257 Sum_probs=44.0
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEE
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHL 362 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L 362 (548)
+|+++|..+|+++++|||. |.+....+.+.. ..+.+++.++|..+... .++|++.|
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l~~a-~~G~~v~~t~Ha~~~~~-~~~Rl~~l 121 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLALTAA-ETGHLVMSTLHTNSAAK-TIDRIIDV 121 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHHHHH-HcCCEEEEEecCCcHHH-HHhHHHhh
Confidence 5889999999999999996 777776666654 35778999999987664 56777655
No 457
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.68 E-value=4.3e-08 Score=97.91 Aligned_cols=44 Identities=23% Similarity=0.189 Sum_probs=33.1
Q ss_pred HHccCCCEEEEeCCCCC------CCHHHHHHHHHHH----hhcCCeEEEEecCHH
Q psy11936 306 ALYIEPTLLLLDEPTNH------LDLNAVIWLDNYL----QGWKKTLLIVSHDQS 350 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~------LD~~s~~~L~~~L----~~~~~TvIiVSHD~~ 350 (548)
+...+|+++|+| |++. +|......+.+.| ...+.|||+|+|..-
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 446899999999 8754 6887766666555 345789999999854
No 458
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.67 E-value=1.3e-06 Score=76.76 Aligned_cols=59 Identities=31% Similarity=0.358 Sum_probs=45.6
Q ss_pred cCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH---------HHhhcCCeEEEEecC
Q psy11936 290 TKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDN---------YLQGWKKTLLIVSHD 348 (548)
Q Consensus 290 ~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~---------~L~~~~~TvIiVSHD 348 (548)
....+++...+..++++-...|.+||+||+....+......... ........+|+++|.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 58 KASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 44678888899999999988899999999999999887654432 222235688888884
No 459
>PRK14079 recF recombination protein F; Provisional
Probab=98.66 E-value=5e-08 Score=103.04 Aligned_cols=75 Identities=19% Similarity=0.086 Sum_probs=63.2
Q ss_pred CCCCHHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEE
Q psy11936 291 KNFSGGWRMRVSLARALY---------IEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIH 361 (548)
Q Consensus 291 ~~LSGGqkqRvaLAraL~---------~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~ 361 (548)
..+|+||+++++||..|+ ..|++|||||||++||...+.+|.++|.....++|..|+ ....|++++.
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~q~~it~t~----~~~~~~~~~~ 337 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLPQAIVAGTE----APPGAALTLR 337 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCCcEEEEcCC----CCCCCceEEE
Confidence 458999999999999998 899999999999999999999999999765444444443 3467999999
Q ss_pred EeCCEEEE
Q psy11936 362 LDQQKLYY 369 (548)
Q Consensus 362 L~~G~i~~ 369 (548)
+.+|++..
T Consensus 338 ~~~~~~~~ 345 (349)
T PRK14079 338 IEAGVFTP 345 (349)
T ss_pred EeccEecC
Confidence 99998763
No 460
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.66 E-value=2.7e-08 Score=107.19 Aligned_cols=54 Identities=15% Similarity=0.239 Sum_probs=45.0
Q ss_pred eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCe-EEEEeceeeccCch
Q psy11936 160 DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI-DILYCEQEVVADDL 217 (548)
Q Consensus 160 ~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g-~I~~~~q~i~~~~~ 217 (548)
.+|++|||+|.+|++++|+|||||||||||+ +|. ..|.+| .|.+.+.++.....
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l--~~~~sGg~I~ldg~~~~~~~~ 74 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENK--RKFSEGYEFFLDATHSFSPNK 74 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCC--CCCCCCCEEEECCEECCCCCH
Confidence 4799999999999999999999999999999 443 345666 79999988865443
No 461
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.61 E-value=3.2e-07 Score=99.47 Aligned_cols=179 Identities=20% Similarity=0.179 Sum_probs=93.3
Q ss_pred CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHH
Q psy11936 158 GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAEC 237 (548)
Q Consensus 158 ~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~ 237 (548)
+..+++++ |.|.+|++++|+|+||+||||||++|++. ..+..+.+...+..- ..+..+......... +...
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~--~~~~~~vi~~iG~r~-----~ev~~~~~~~~~~~~-l~~t 220 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARN--TEADVNVIALIGERG-----REVREFIEHDLGEEG-LKRS 220 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCC--CCCCEEEEEEEeecc-----hHHHHHHHHHhcccc-cceE
Confidence 45689999 99999999999999999999999999975 344445444444321 111111100000000 0000
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEe
Q psy11936 238 AKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLD 317 (548)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLD 317 (548)
..+. ...+......+. ..... -.+.+.+...|-+-- -.+.+|+- .|+|+-.= =|.+.
T Consensus 221 vvv~-~~~d~~p~~r~~---------~~~~a-~t~AE~frd~G~~Vl---l~~DslTr-------~A~A~REi--sl~~g 277 (440)
T TIGR01026 221 VVVV-ATSDQSPLLRLK---------GAYVA-TAIAEYFRDQGKDVL---LLMDSVTR-------FAMAQREI--GLAAG 277 (440)
T ss_pred EEEE-ECCCCCHHHHHH---------HHHHH-HHHHHHHHHCCCCEE---EEEeChHH-------HHHHHHHH--HHhcC
Confidence 0000 000011111000 00001 112222322342210 01122221 11111000 03355
Q ss_pred CC--CCCCCHHHHHHHHHHHhhcC---C-------eEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 318 EP--TNHLDLNAVIWLDNYLQGWK---K-------TLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 318 EP--Tn~LD~~s~~~L~~~L~~~~---~-------TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|| +.|+|+.....+.+++.+.+ + ||++-+||+ .+.+||++..+.+|+++..
T Consensus 278 e~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~--~dpi~d~~~~i~dG~ivLs 340 (440)
T TIGR01026 278 EPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDM--NEPIADSVRGILDGHIVLS 340 (440)
T ss_pred CCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCC--CcchhhhhccccceEEEEe
Confidence 75 56899998888888887642 4 788899997 4668999999999999864
No 462
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.56 E-value=2.9e-08 Score=109.28 Aligned_cols=78 Identities=15% Similarity=0.137 Sum_probs=55.6
Q ss_pred HHHhCCCChhhhhcccCCCCHHHHHHHHHH--HHHccCCCEEEEeCCCCCCCHHHHHHHH---HHHhhcCCeEEEEecCH
Q psy11936 275 ILAGLGFSRAMQDRATKNFSGGWRMRVSLA--RALYIEPTLLLLDEPTNHLDLNAVIWLD---NYLQGWKKTLLIVSHDQ 349 (548)
Q Consensus 275 ~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA--raL~~~P~lLLLDEPTn~LD~~s~~~L~---~~L~~~~~TvIiVSHD~ 349 (548)
++..+++. ...++.+..+|+|++|||.|+ .+|...|+.+ ...+..+. ..++..+.|+|+|||+.
T Consensus 99 ~~~~~~l~-~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~g~TvLLtsh~~ 167 (484)
T TIGR02655 99 VVGGFDLS-ALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQIGVTTVMTTERI 167 (484)
T ss_pred ccccCCHH-HHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHCCCEEEEEecCc
Confidence 34455664 356778889999999999999 5665655544 33444444 44555688999999987
Q ss_pred HH---------HHhhcCEEEEEe
Q psy11936 350 SF---------LDNVCNEIIHLD 363 (548)
Q Consensus 350 ~~---------l~~vadrIi~L~ 363 (548)
.. ...+||.|+.|+
T Consensus 168 ~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 168 EEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred ccccccccCCceeEeeeeEEEEE
Confidence 64 256899999887
No 463
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.56 E-value=7.1e-07 Score=104.56 Aligned_cols=66 Identities=21% Similarity=0.283 Sum_probs=51.4
Q ss_pred HHHHHccCCCEEEEeCCCCCC-CHHHHHHHHHHHh---hcCCeEEEEecCHHHHHh--hcCEEEEEeCCEEE
Q psy11936 303 LARALYIEPTLLLLDEPTNHL-DLNAVIWLDNYLQ---GWKKTLLIVSHDQSFLDN--VCNEIIHLDQQKLY 368 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~L-D~~s~~~L~~~L~---~~~~TvIiVSHD~~~l~~--vadrIi~L~~G~i~ 368 (548)
|++++..+|.++|+|||+..| |+.....+.++++ +.++++|++||++..+.. +++.|+.....+|.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhCchHHHHHHcCCccee
Confidence 677889999999999999999 6888777777765 457899999999999875 44555444445544
No 464
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.54 E-value=1.1e-07 Score=116.05 Aligned_cols=77 Identities=26% Similarity=0.180 Sum_probs=63.3
Q ss_pred hhcccCCCCHHHHHHHH----HHHH--------HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHH
Q psy11936 286 QDRATKNFSGGWRMRVS----LARA--------LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLD 353 (548)
Q Consensus 286 ~~~~~~~LSGGqkqRva----LAra--------L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~ 353 (548)
.++.++.|||||||+++ +|++ +..+|++|||||||++||+.++..+.+++..++.++||+||+..=..
T Consensus 1241 ~~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l~~~~i~~s~~~Wg~Y 1320 (1353)
T TIGR02680 1241 LTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRALDLDFVMTSEREWGCY 1320 (1353)
T ss_pred hhccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHhCCCEEEEccchhccc
Confidence 34557899999999996 5655 55899999999999999999999999999999999999999976543
Q ss_pred hhcC--EEEEE
Q psy11936 354 NVCN--EIIHL 362 (548)
Q Consensus 354 ~vad--rIi~L 362 (548)
..+. .|+.|
T Consensus 1321 ~tVp~laI~el 1331 (1353)
T TIGR02680 1321 PEVPGLAICQL 1331 (1353)
T ss_pred cCCCcceEEEE
Confidence 3322 34555
No 465
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.50 E-value=1e-07 Score=92.20 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=36.3
Q ss_pred HHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q psy11936 273 RRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL 325 (548)
Q Consensus 273 ~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~ 325 (548)
.+.|..+.... ....+..++|.|++++..+ .+.+++++|+|.|+.+.++
T Consensus 65 ~~~l~~l~~~~-~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 65 ISHLQDLKNGK-SVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred HHHHHHHHCCC-CEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 34555555442 3466788899998876655 5788999999999999886
No 466
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.50 E-value=4.7e-07 Score=98.89 Aligned_cols=50 Identities=24% Similarity=0.389 Sum_probs=36.3
Q ss_pred eeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEece
Q psy11936 161 LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQ 210 (548)
Q Consensus 161 iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q 210 (548)
++++.++.+..|.+++|||||||||||++..|++......+...|.+...
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~ 294 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTT 294 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeC
Confidence 45567777889999999999999999999999974211222224555444
No 467
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.42 E-value=1.4e-07 Score=104.81 Aligned_cols=73 Identities=22% Similarity=0.241 Sum_probs=64.2
Q ss_pred cEEEEeeEEEeCCCCcccccCCccC-CCceeEeecC----ccceeeccCCCCCCCCCCeee-ccce---------eeeee
Q psy11936 466 ILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKP----REYVVKFSFPDPPPLQPPILG-LHNV---------TFAYE 530 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~-~~n~---------~~~y~ 530 (548)
-|+++||+|+|++++++|+|+||+. .|++++|.|| +|||+|+|+|..+|++|.|+. ++++ .|+|+
T Consensus 334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V 413 (529)
T TIGR02868 334 TLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVF 413 (529)
T ss_pred eEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEE
Confidence 4999999999986567999999985 9999999999 599999999999999999854 4454 49999
Q ss_pred eccceeee
Q psy11936 531 GMKPLLVD 538 (548)
Q Consensus 531 ~~~~~~~~ 538 (548)
.|+|.|.+
T Consensus 414 ~Q~~~lF~ 421 (529)
T TIGR02868 414 AQDAHLFD 421 (529)
T ss_pred ccCccccc
Confidence 99999875
No 468
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.41 E-value=1.8e-07 Score=94.10 Aligned_cols=69 Identities=25% Similarity=0.322 Sum_probs=60.5
Q ss_pred cEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce----------eeee
Q psy11936 466 ILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV----------TFAY 529 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~----------~~~y 529 (548)
.|+++||+|+|++ +++++|+||.. .|+.+.|.||| |||+|+|.|.++|..|+|+. +.++ +++|
T Consensus 2 ~L~~~~ls~~y~~-~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 2 MLEVENLSFGYGG-KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eeEEEEEEEEECC-eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 6899999999974 79999999985 89999999997 99999999999999997654 4554 6999
Q ss_pred eeccce
Q psy11936 530 EGMKPL 535 (548)
Q Consensus 530 ~~~~~~ 535 (548)
+.|.+.
T Consensus 81 vpQ~~~ 86 (258)
T COG1120 81 VPQSPS 86 (258)
T ss_pred eccCCC
Confidence 999963
No 469
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.41 E-value=2.3e-07 Score=87.63 Aligned_cols=70 Identities=20% Similarity=0.099 Sum_probs=62.3
Q ss_pred EEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeeeeecccee
Q psy11936 467 LGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAYEGMKPLL 536 (548)
Q Consensus 467 L~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y~~~~~~~ 536 (548)
|++++++++|++++++|+++||+. .|+.++|.||| |||+++|.|.++|++|.|+....-.++|+.|+|.+
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~ 75 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYL 75 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCcc
Confidence 478999999965467999999985 99999999996 89999999999999999988777789999999865
No 470
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.39 E-value=2.8e-07 Score=90.46 Aligned_cols=76 Identities=20% Similarity=0.180 Sum_probs=63.9
Q ss_pred CCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeec-cce-------ee
Q psy11936 461 PLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGL-HNV-------TF 527 (548)
Q Consensus 461 ~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~-~n~-------~~ 527 (548)
..++++|.++|++++|++ +++|+++||.. .|+.++|.||| |||+|+|.|.++|++|.|+.. +++ .+
T Consensus 6 ~~~~~~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i 84 (214)
T PRK13543 6 HTAPPLLAAHALAFSRNE-EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFM 84 (214)
T ss_pred CCCcceEEEeeEEEecCC-ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhce
Confidence 346689999999999965 57999999985 89999999996 899999999999999987654 343 38
Q ss_pred eeeeccceee
Q psy11936 528 AYEGMKPLLV 537 (548)
Q Consensus 528 ~y~~~~~~~~ 537 (548)
+|+.|.|.+.
T Consensus 85 ~~~~q~~~~~ 94 (214)
T PRK13543 85 AYLGHLPGLK 94 (214)
T ss_pred EEeecCcccc
Confidence 8999987654
No 471
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.38 E-value=8.6e-07 Score=85.84 Aligned_cols=66 Identities=29% Similarity=0.355 Sum_probs=52.9
Q ss_pred cccCCCCHHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHH
Q psy11936 288 RATKNFSGGWRMRVSLARALYIEP---TLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLD 353 (548)
Q Consensus 288 ~~~~~LSGGqkqRvaLAraL~~~P---~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~ 353 (548)
.+...||.|+++.+.|+.+|+..+ .+||+|||-+||.|..+..|.++|... +.-||++||...+++
T Consensus 232 ~~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ild 303 (303)
T PF13304_consen 232 IPLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFILD 303 (303)
T ss_dssp GGGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG--
T ss_pred EeeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhcC
Confidence 356678999999999998888777 899999999999999999999999765 368999999988763
No 472
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.37 E-value=2.5e-07 Score=93.34 Aligned_cols=71 Identities=18% Similarity=0.211 Sum_probs=63.8
Q ss_pred CcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeeeeecccee
Q psy11936 465 PILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAYEGMKPLL 536 (548)
Q Consensus 465 ~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y~~~~~~~ 536 (548)
++|+++||+++|++ +++|+++||+. .|+.+.|.||| |||+|+|.|.++|++|.|+......++|+.|+|.+
T Consensus 3 ~~l~~~~l~~~~~~-~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~ 78 (251)
T PRK09544 3 SLVSLENVSVSFGQ-RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYL 78 (251)
T ss_pred cEEEEeceEEEECC-ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEecccccc
Confidence 47999999999975 67999999985 99999999996 89999999999999999988777789999999854
No 473
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.33 E-value=9.8e-07 Score=84.84 Aligned_cols=69 Identities=20% Similarity=0.258 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHH--HHhhcCEEEEEeCC
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSF--LDNVCNEIIHLDQQ 365 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~--l~~vadrIi~L~~G 365 (548)
-|+-.|..||.+++.+|..+..+| +-|||.....+.+.+... +.+||+.+|.+.. +..+||.+++++.+
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 388999999999999999998887 889999999998888765 2589999999865 66789999887643
No 474
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.33 E-value=4.6e-07 Score=91.74 Aligned_cols=74 Identities=12% Similarity=0.002 Sum_probs=63.1
Q ss_pred CCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeec-cce-----eeeeeec
Q psy11936 464 PPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGL-HNV-----TFAYEGM 532 (548)
Q Consensus 464 ~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~-~n~-----~~~y~~~ 532 (548)
+++|+++||+++|++ +++|+|+||+. .|+.++|.||| |||+|+|+|.++|++|.|+.+ .++ .++|+.|
T Consensus 10 ~~~l~i~~l~~~~~~-~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q 88 (257)
T PRK11247 10 GTPLLLNAVSKRYGE-RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQ 88 (257)
T ss_pred CCcEEEEEEEEEECC-cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEec
Confidence 578999999999975 67999999985 89999999996 899999999999999987643 332 5899999
Q ss_pred cceeee
Q psy11936 533 KPLLVD 538 (548)
Q Consensus 533 ~~~~~~ 538 (548)
.|.+++
T Consensus 89 ~~~l~~ 94 (257)
T PRK11247 89 DARLLP 94 (257)
T ss_pred CccCCC
Confidence 987653
No 475
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.31 E-value=2.7e-07 Score=91.25 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=23.6
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHH
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIA 193 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLa 193 (548)
-|++|+.++|.|++|||||||+..++
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHH
Confidence 47899999999999999999988665
No 476
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.30 E-value=5.1e-07 Score=87.79 Aligned_cols=70 Identities=14% Similarity=0.189 Sum_probs=61.1
Q ss_pred EEEEeeEEEeCCC----CcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeeeeeccceee
Q psy11936 467 LGLHNVTFAYEGM----KPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAYEGMKPLLV 537 (548)
Q Consensus 467 L~l~~vs~~Y~~~----~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y~~~~~~~~ 537 (548)
|+++||+++|++. +++|+++||+. .|+.+.|.||| |||+++|+|..+|++|.|+... +|+|+.|+|.++
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g--~i~~~~q~~~l~ 78 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG--SIAYVSQEPWIQ 78 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC--EEEEEecCchhc
Confidence 5789999999754 37999999985 99999999996 8899999999999999987655 899999999776
Q ss_pred e
Q psy11936 538 D 538 (548)
Q Consensus 538 ~ 538 (548)
+
T Consensus 79 ~ 79 (204)
T cd03250 79 N 79 (204)
T ss_pred c
Confidence 4
No 477
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.30 E-value=2.7e-06 Score=89.79 Aligned_cols=45 Identities=24% Similarity=0.229 Sum_probs=35.8
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHH
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQS 350 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~ 350 (548)
+|+++|-++||++++||+. |.++.....+.. ..+.+|+.+.|-.+
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~aa-~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALTAA-ETGHLVFGTLHTNS 231 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHHHH-HcCCcEEEEEcCCC
Confidence 5788999999999999997 888877655543 34678888889843
No 478
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.29 E-value=5.1e-07 Score=89.33 Aligned_cols=74 Identities=22% Similarity=0.278 Sum_probs=63.1
Q ss_pred CCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeecc-ce----------ee
Q psy11936 464 PPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLH-NV----------TF 527 (548)
Q Consensus 464 ~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~-n~----------~~ 527 (548)
+++|++++|++.|++ +++|+|+||+. .|+.+.|.||| |||+++|+|.++|++|.|+... ++ .+
T Consensus 5 ~~~i~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 5 SPLLQLQNVGYLAGD-AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred CceEEEeccEEeeCC-ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 468999999999965 67999999985 99999999996 8899999999999999886553 32 58
Q ss_pred eeeeccceeee
Q psy11936 528 AYEGMKPLLVD 538 (548)
Q Consensus 528 ~y~~~~~~~~~ 538 (548)
+|+.|.|.+.+
T Consensus 84 ~~~~q~~~l~~ 94 (225)
T PRK10247 84 SYCAQTPTLFG 94 (225)
T ss_pred EEEeccccccc
Confidence 99999987653
No 479
>PF12848 ABC_tran_2: ABC transporter
Probab=98.29 E-value=4.7e-06 Score=69.76 Aligned_cols=53 Identities=30% Similarity=0.485 Sum_probs=48.8
Q ss_pred EEEeCCEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy11936 360 IHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQA 412 (548)
Q Consensus 360 i~L~~G~i~~~~g~y~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~ 412 (548)
|.|++|+|..|.|||+.|...+......+.+.++.++++++++++++.+.+.+
T Consensus 1 ~el~~~~l~~Y~GnY~~y~~~k~~~~~~~~~~~~~~~k~~~~l~~~i~r~~~~ 53 (85)
T PF12848_consen 1 IELENGKLTEYPGNYSDYLEQKEERRERQERQYEKQQKEIKRLEEFIRRFRAK 53 (85)
T ss_pred CEeECCEeEEeCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999998876653
No 480
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=98.29 E-value=1e-05 Score=81.01 Aligned_cols=46 Identities=22% Similarity=0.251 Sum_probs=31.9
Q ss_pred ccCCCEEEEeCCCCCCCHHH----HHHHHHHHhh-cCCeEEEEecCHHHHH
Q psy11936 308 YIEPTLLLLDEPTNHLDLNA----VIWLDNYLQG-WKKTLLIVSHDQSFLD 353 (548)
Q Consensus 308 ~~~P~lLLLDEPTn~LD~~s----~~~L~~~L~~-~~~TvIiVSHD~~~l~ 353 (548)
+.+..++|+||...+=++.. ...+.++|.+ .+..+|++||+.+...
T Consensus 120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~ 170 (235)
T PF00488_consen 120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAE 170 (235)
T ss_dssp --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGG
T ss_pred cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHH
Confidence 45677999999998888754 2345566665 5778999999998754
No 481
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.28 E-value=5.5e-07 Score=87.65 Aligned_cols=72 Identities=14% Similarity=0.097 Sum_probs=61.1
Q ss_pred CcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecC----ccceeeccCCCCCCCCCCeeec-cce-----------ee
Q psy11936 465 PILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKP----REYVVKFSFPDPPPLQPPILGL-HNV-----------TF 527 (548)
Q Consensus 465 ~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~-~n~-----------~~ 527 (548)
+.|+++||+++|++ ..+|++||++. .|+++.|.|| +|||+|||+|..+|++|.|+.+ +++ ++
T Consensus 1 ~mi~i~~l~K~fg~-~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 1 MMIEIKNLSKSFGD-KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred CeEEEEeeeEEeCC-eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 36899999999975 68999999996 9999999999 5999999999999999999874 344 36
Q ss_pred eeeeccceee
Q psy11936 528 AYEGMKPLLV 537 (548)
Q Consensus 528 ~y~~~~~~~~ 537 (548)
+++-|+.-|.
T Consensus 80 GmVFQ~fnLF 89 (240)
T COG1126 80 GMVFQQFNLF 89 (240)
T ss_pred Ceeccccccc
Confidence 6777776553
No 482
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.26 E-value=5.2e-07 Score=88.81 Aligned_cols=74 Identities=19% Similarity=0.071 Sum_probs=65.6
Q ss_pred CcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecC----ccceeeccCCCCCCCCCCeeecc--------------ce
Q psy11936 465 PILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKP----REYVVKFSFPDPPPLQPPILGLH--------------NV 525 (548)
Q Consensus 465 ~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~--------------n~ 525 (548)
.+|++++|++.|++++.+++||||+. .|+-+.|.|| +|||+|+|.|...|+.|+|...- --
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 57999999999987789999999996 9999999998 59999999999999999876543 45
Q ss_pred eeeeeeccceeee
Q psy11936 526 TFAYEGMKPLLVD 538 (548)
Q Consensus 526 ~~~y~~~~~~~~~ 538 (548)
.++|+.|.|-||.
T Consensus 82 ~iGmIfQ~~nLv~ 94 (258)
T COG3638 82 DIGMIFQQFNLVP 94 (258)
T ss_pred hceeEeccCCccc
Confidence 7999999999874
No 483
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.26 E-value=6.7e-07 Score=87.66 Aligned_cols=73 Identities=15% Similarity=0.126 Sum_probs=60.7
Q ss_pred cEEEEeeEEEeCCC-CcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeec-cce-------------
Q psy11936 466 ILGLHNVTFAYEGM-KPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGL-HNV------------- 525 (548)
Q Consensus 466 vL~l~~vs~~Y~~~-~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~-~n~------------- 525 (548)
+|+++||+++|++. +++|+++||.. .|+.+.|.||| |||+|+|+|.++|++|.|+.. +++
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 37899999999643 46999999985 89999999996 899999999999999987553 333
Q ss_pred eeeeeeccceeee
Q psy11936 526 TFAYEGMKPLLVD 538 (548)
Q Consensus 526 ~~~y~~~~~~~~~ 538 (548)
.++|+.|+|.+..
T Consensus 81 ~i~~~~q~~~~~~ 93 (216)
T TIGR00960 81 HIGMVFQDHRLLS 93 (216)
T ss_pred hceEEecCccccc
Confidence 4899999987653
No 484
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.26 E-value=4.7e-06 Score=94.35 Aligned_cols=48 Identities=31% Similarity=0.340 Sum_probs=39.7
Q ss_pred HHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q psy11936 272 ARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG 337 (548)
Q Consensus 272 ~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~ 337 (548)
+...|..+|+.. .....+..+||| +|+||| +.+||+..+..|..+|.+
T Consensus 244 a~~~l~~~gl~~-~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 244 ARRDLAETGVPE-PKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED 291 (615)
T ss_pred HHHHHHHcCCCc-hhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence 445577788864 456778899999 999999 899999999999999875
No 485
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.26 E-value=3.8e-06 Score=101.72 Aligned_cols=43 Identities=30% Similarity=0.346 Sum_probs=32.8
Q ss_pred eeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEe
Q psy11936 165 ANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYC 208 (548)
Q Consensus 165 vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~ 208 (548)
+++....+.++||+|++|+|||||++++++. +.....+.+.+.
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~-l~~~F~g~vfv~ 242 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSR-LSRQFQSSVFID 242 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHH-HhhcCCeEEEee
Confidence 4677788999999999999999999999764 223334555543
No 486
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.26 E-value=5.4e-07 Score=88.36 Aligned_cols=72 Identities=14% Similarity=0.059 Sum_probs=59.6
Q ss_pred EEEEeeEEEeCCC---CcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce------------
Q psy11936 467 LGLHNVTFAYEGM---KPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV------------ 525 (548)
Q Consensus 467 L~l~~vs~~Y~~~---~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~------------ 525 (548)
|++++|+++|++. +++|+++||+. .|+.+.|.||| |||+|+|+|.++|++|.|+. ++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 5789999999752 57999999985 89999999996 89999999999999998764 3332
Q ss_pred --eeeeeeccceeee
Q psy11936 526 --TFAYEGMKPLLVD 538 (548)
Q Consensus 526 --~~~y~~~~~~~~~ 538 (548)
.++|+.|.|.+.+
T Consensus 81 ~~~i~~~~q~~~~~~ 95 (218)
T cd03255 81 RRHIGFVFQSFNLLP 95 (218)
T ss_pred hhcEEEEeeccccCC
Confidence 4899999986653
No 487
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.26 E-value=7.2e-07 Score=92.40 Aligned_cols=73 Identities=14% Similarity=0.014 Sum_probs=62.0
Q ss_pred CCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccc---------eeee
Q psy11936 464 PPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHN---------VTFA 528 (548)
Q Consensus 464 ~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n---------~~~~ 528 (548)
+.+|+++||+++|++ +.+|+|+||+. .|+.+.|.||| |||+|+|+|.++|++|+|+. +++ -.++
T Consensus 2 ~~~i~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~ 80 (303)
T TIGR01288 2 NVAIDLVGVSKSYGD-KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIG 80 (303)
T ss_pred CcEEEEEeEEEEeCC-eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEE
Confidence 357999999999975 67999999985 89999999996 89999999999999998764 333 3589
Q ss_pred eeeccceee
Q psy11936 529 YEGMKPLLV 537 (548)
Q Consensus 529 y~~~~~~~~ 537 (548)
|+.|+|.+.
T Consensus 81 ~v~q~~~~~ 89 (303)
T TIGR01288 81 VVPQFDNLD 89 (303)
T ss_pred EEeccccCC
Confidence 999998654
No 488
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.24 E-value=7.9e-07 Score=88.29 Aligned_cols=75 Identities=11% Similarity=0.003 Sum_probs=62.2
Q ss_pred CCcEEEEeeEEEeCCC---CcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeec-cc----------
Q psy11936 464 PPILGLHNVTFAYEGM---KPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGL-HN---------- 524 (548)
Q Consensus 464 ~~vL~l~~vs~~Y~~~---~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~-~n---------- 524 (548)
+++|++++|+++|++. +++|+++||.. .|+.+.|.||| |||+|+|+|.++|++|+|+.. ++
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 82 (233)
T PRK11629 3 KILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKA 82 (233)
T ss_pred CceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHH
Confidence 3589999999999642 47999999985 89999999996 899999999999999987653 23
Q ss_pred ----eeeeeeeccceeee
Q psy11936 525 ----VTFAYEGMKPLLVD 538 (548)
Q Consensus 525 ----~~~~y~~~~~~~~~ 538 (548)
-.++|+.|+|.+.+
T Consensus 83 ~~~~~~i~~v~q~~~~~~ 100 (233)
T PRK11629 83 ELRNQKLGFIYQFHHLLP 100 (233)
T ss_pred HHHhccEEEEecCcccCC
Confidence 24899999987653
No 489
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.24 E-value=6.2e-07 Score=87.50 Aligned_cols=71 Identities=15% Similarity=0.042 Sum_probs=60.1
Q ss_pred EEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce------eeeeeeccc
Q psy11936 467 LGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV------TFAYEGMKP 534 (548)
Q Consensus 467 L~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~------~~~y~~~~~ 534 (548)
|+++++++.|++ +++|+|+||+. .|+.++|.||| |||+++|+|.++|++|+|+. ++++ .++|+.|+|
T Consensus 1 l~~~~l~~~~~~-~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~ 79 (210)
T cd03269 1 LEVENVTKRFGR-VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEER 79 (210)
T ss_pred CEEEEEEEEECC-EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCC
Confidence 478999999965 67999999984 99999999986 89999999999999998765 4454 589999998
Q ss_pred eeee
Q psy11936 535 LLVD 538 (548)
Q Consensus 535 ~~~~ 538 (548)
.+.+
T Consensus 80 ~~~~ 83 (210)
T cd03269 80 GLYP 83 (210)
T ss_pred cCCc
Confidence 6543
No 490
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.23 E-value=7.4e-07 Score=87.67 Aligned_cols=72 Identities=18% Similarity=0.126 Sum_probs=60.3
Q ss_pred EEEEeeEEEeCCC---CcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce-----eeeeeec
Q psy11936 467 LGLHNVTFAYEGM---KPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV-----TFAYEGM 532 (548)
Q Consensus 467 L~l~~vs~~Y~~~---~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~-----~~~y~~~ 532 (548)
|+++||+++|++. +++|+|+||+. .|+.+.|.||| |||+|+|+|.++|++|+|+. ++++ .++|+.|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 4789999999642 57999999985 99999999996 89999999999999998765 4443 5899999
Q ss_pred cceeee
Q psy11936 533 KPLLVD 538 (548)
Q Consensus 533 ~~~~~~ 538 (548)
.|.+++
T Consensus 81 ~~~~~~ 86 (220)
T cd03293 81 QDALLP 86 (220)
T ss_pred cccccc
Confidence 987654
No 491
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.23 E-value=9.2e-07 Score=81.62 Aligned_cols=65 Identities=18% Similarity=0.129 Sum_probs=58.5
Q ss_pred EEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeeeeec
Q psy11936 467 LGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAYEGM 532 (548)
Q Consensus 467 L~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y~~~ 532 (548)
|++++++++|++ .++|+++||+. .|+.+.|.||| |||+++|+|.++|++|.|+...+..++|+.|
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~ 70 (144)
T cd03221 1 IELENLSKTYGG-KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ 70 (144)
T ss_pred CEEEEEEEEECC-ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc
Confidence 478999999975 47999999985 99999999996 8999999999999999999988888999876
No 492
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.23 E-value=7.7e-07 Score=100.32 Aligned_cols=74 Identities=14% Similarity=0.113 Sum_probs=64.3
Q ss_pred CcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecC----ccceeeccCCCCCCCCCCee-ecccee----------ee
Q psy11936 465 PILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKP----REYVVKFSFPDPPPLQPPIL-GLHNVT----------FA 528 (548)
Q Consensus 465 ~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~----~~~~~~~~~~~~~~~~~~~~-~~~n~~----------~~ 528 (548)
.-++++||+|+|++++++|+|+||+. .|++++|.|+ +|||+|+|+|..+|++|.|+ .++|+. |+
T Consensus 339 ~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~ 418 (592)
T PRK10790 339 GRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVA 418 (592)
T ss_pred CeEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheE
Confidence 35899999999976568999999996 9999999998 59999999999999999864 455554 89
Q ss_pred eeeccceeee
Q psy11936 529 YEGMKPLLVD 538 (548)
Q Consensus 529 y~~~~~~~~~ 538 (548)
|+.|+|.+++
T Consensus 419 ~v~Q~~~lF~ 428 (592)
T PRK10790 419 MVQQDPVVLA 428 (592)
T ss_pred EEccCCcccc
Confidence 9999999885
No 493
>PRK10908 cell division protein FtsE; Provisional
Probab=98.22 E-value=9.8e-07 Score=86.92 Aligned_cols=71 Identities=15% Similarity=0.125 Sum_probs=59.7
Q ss_pred cEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeec-cce-------------e
Q psy11936 466 ILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGL-HNV-------------T 526 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~-~n~-------------~ 526 (548)
.|+++||++.|++++.+|+|+||+. .|+.+.|.||| |||+++|+|.++|++|.|+.. +++ .
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 3789999999943467999999985 99999999996 899999999999999987653 333 4
Q ss_pred eeeeecccee
Q psy11936 527 FAYEGMKPLL 536 (548)
Q Consensus 527 ~~y~~~~~~~ 536 (548)
++|+.|+|.+
T Consensus 81 i~~~~q~~~~ 90 (222)
T PRK10908 81 IGMIFQDHHL 90 (222)
T ss_pred eEEEecCccc
Confidence 7999999865
No 494
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.22 E-value=4.2e-06 Score=90.39 Aligned_cols=37 Identities=35% Similarity=0.535 Sum_probs=34.5
Q ss_pred CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 158 GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 158 ~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
+..+++++ |+|.+|+++||+|+||||||||+++|+|.
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~ 178 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRY 178 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcc
Confidence 45689999 99999999999999999999999999984
No 495
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.21 E-value=9.4e-07 Score=86.92 Aligned_cols=70 Identities=10% Similarity=-0.037 Sum_probs=59.4
Q ss_pred EEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeecc-ce---------eeeeee
Q psy11936 467 LGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLH-NV---------TFAYEG 531 (548)
Q Consensus 467 L~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~-n~---------~~~y~~ 531 (548)
|+++|++++|++ +++|+|+||+. .|+.++|.||| |||+|+|+|.++|++|.|+... ++ +++|+.
T Consensus 1 i~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (220)
T cd03265 1 IEVENLVKKYGD-FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVF 79 (220)
T ss_pred CEEEEEEEEECC-EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEec
Confidence 578999999965 67999999985 89999999996 8999999999999999887543 22 589999
Q ss_pred ccceee
Q psy11936 532 MKPLLV 537 (548)
Q Consensus 532 ~~~~~~ 537 (548)
|.|.+.
T Consensus 80 q~~~~~ 85 (220)
T cd03265 80 QDLSVD 85 (220)
T ss_pred CCcccc
Confidence 998654
No 496
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.21 E-value=8.6e-07 Score=86.60 Aligned_cols=72 Identities=17% Similarity=0.108 Sum_probs=59.7
Q ss_pred EEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce-------------ee
Q psy11936 467 LGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV-------------TF 527 (548)
Q Consensus 467 L~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~-------------~~ 527 (548)
|++++|++.|++.+++|+|+||+. .|+.+.|.||| |||+++|.|.++|++|.|+. ++++ .+
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 478999999965467999999985 99999999986 89999999999999998754 3433 48
Q ss_pred eeeeccceeee
Q psy11936 528 AYEGMKPLLVD 538 (548)
Q Consensus 528 ~y~~~~~~~~~ 538 (548)
+|+.|.|.+..
T Consensus 81 ~~v~q~~~~~~ 91 (214)
T cd03292 81 GVVFQDFRLLP 91 (214)
T ss_pred EEEecCchhcc
Confidence 99999986553
No 497
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.20 E-value=1.1e-06 Score=87.59 Aligned_cols=71 Identities=13% Similarity=0.021 Sum_probs=60.3
Q ss_pred cEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeecc-c--------eeeeeee
Q psy11936 466 ILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLH-N--------VTFAYEG 531 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~-n--------~~~~y~~ 531 (548)
.|+++||+++|++ +++|+|+||+. .|+.+.|.||| |||+|+|+|.++|++|.|+... + -.++|+.
T Consensus 2 ~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~ 80 (239)
T cd03296 2 SIEVRNVSKRFGD-FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVF 80 (239)
T ss_pred EEEEEeEEEEECC-EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEe
Confidence 4789999999975 67999999985 99999999996 8999999999999999876532 2 2589999
Q ss_pred ccceee
Q psy11936 532 MKPLLV 537 (548)
Q Consensus 532 ~~~~~~ 537 (548)
|+|.+.
T Consensus 81 q~~~~~ 86 (239)
T cd03296 81 QHYALF 86 (239)
T ss_pred cCCccc
Confidence 998665
No 498
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.20 E-value=9.7e-07 Score=86.69 Aligned_cols=71 Identities=15% Similarity=0.080 Sum_probs=59.4
Q ss_pred EEEEeeEEEeCCC-CcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce---------eeeee
Q psy11936 467 LGLHNVTFAYEGM-KPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV---------TFAYE 530 (548)
Q Consensus 467 L~l~~vs~~Y~~~-~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~---------~~~y~ 530 (548)
|++++|++.|++. +++|+|+||+. .|+.++|.||| |||+|+|.|.++|++|.|+. ++++ .++|+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 5789999999643 57999999985 89999999996 89999999999999998754 3443 38999
Q ss_pred eccceee
Q psy11936 531 GMKPLLV 537 (548)
Q Consensus 531 ~~~~~~~ 537 (548)
.|.|.+.
T Consensus 81 ~q~~~~~ 87 (220)
T cd03263 81 PQFDALF 87 (220)
T ss_pred cCcCCcc
Confidence 9998665
No 499
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.20 E-value=1.1e-06 Score=86.77 Aligned_cols=74 Identities=8% Similarity=-0.064 Sum_probs=61.5
Q ss_pred CcEEEEeeEEEeCCC---CcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccc-----------
Q psy11936 465 PILGLHNVTFAYEGM---KPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHN----------- 524 (548)
Q Consensus 465 ~vL~l~~vs~~Y~~~---~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n----------- 524 (548)
++|+++||+++|++. .++|+|+||.. .|+.+.|.||| |||+|+|+|.++|++|.|+. +++
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 589999999999753 25999999985 99999999996 89999999999999998753 322
Q ss_pred ---eeeeeeeccceeee
Q psy11936 525 ---VTFAYEGMKPLLVD 538 (548)
Q Consensus 525 ---~~~~y~~~~~~~~~ 538 (548)
-.++|+.|.|.+.+
T Consensus 85 ~~~~~i~~~~q~~~l~~ 101 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIP 101 (228)
T ss_pred HHhheEEEEEcccccCC
Confidence 25899999986643
No 500
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=98.20 E-value=6.7e-06 Score=95.97 Aligned_cols=46 Identities=28% Similarity=0.433 Sum_probs=36.8
Q ss_pred ccCCCEEEEeCC---CCCCCHHHHHH-HHHHHhh-cCCeEEEEecCHHHHH
Q psy11936 308 YIEPTLLLLDEP---TNHLDLNAVIW-LDNYLQG-WKKTLLIVSHDQSFLD 353 (548)
Q Consensus 308 ~~~P~lLLLDEP---Tn~LD~~s~~~-L~~~L~~-~~~TvIiVSHD~~~l~ 353 (548)
+..+.|+||||+ |+.+|-.++.| +.++|.+ .+..+|++||..++..
T Consensus 669 at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~~ 719 (840)
T TIGR01070 669 ATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELTA 719 (840)
T ss_pred CCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHHH
Confidence 568899999999 88888777554 7777777 6778999999987653
Done!