Query psy11936
Match_columns 548
No_of_seqs 754 out of 3747
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 22:48:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11936.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11936hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iw3_A Elongation factor 3A; a 100.0 2.5E-48 8.6E-53 448.2 30.3 297 146-535 435-746 (986)
2 4g1u_C Hemin import ATP-bindin 100.0 6.6E-44 2.3E-48 360.0 22.5 215 145-376 10-234 (266)
3 2olj_A Amino acid ABC transpor 100.0 9.5E-44 3.2E-48 358.2 23.0 218 146-377 24-246 (263)
4 3gfo_A Cobalt import ATP-bindi 100.0 4.9E-44 1.7E-48 362.5 20.8 218 146-377 7-231 (275)
5 2pcj_A ABC transporter, lipopr 100.0 1.1E-43 3.7E-48 349.6 21.7 214 146-370 4-220 (224)
6 3tif_A Uncharacterized ABC tra 100.0 6.3E-44 2.2E-48 353.8 20.2 215 146-370 1-226 (235)
7 1b0u_A Histidine permease; ABC 100.0 9.5E-44 3.2E-48 358.1 21.5 219 146-377 6-240 (262)
8 3tui_C Methionine import ATP-b 100.0 8.8E-44 3E-48 372.6 20.5 220 145-376 23-250 (366)
9 3rlf_A Maltose/maltodextrin im 100.0 1.3E-43 4.5E-48 373.3 19.8 214 146-375 3-220 (381)
10 1vpl_A ABC transporter, ATP-bi 100.0 5.1E-43 1.7E-47 351.6 22.4 217 145-377 14-233 (256)
11 3fvq_A Fe(3+) IONS import ATP- 100.0 5.1E-44 1.8E-48 374.0 15.4 214 146-373 4-223 (359)
12 1g6h_A High-affinity branched- 100.0 1.8E-43 6.1E-48 355.0 17.0 217 146-376 7-239 (257)
13 1ji0_A ABC transporter; ATP bi 100.0 7.8E-43 2.7E-47 346.9 20.5 217 146-377 6-226 (240)
14 1z47_A CYSA, putative ABC-tran 100.0 7.9E-43 2.7E-47 364.9 20.6 216 144-376 12-232 (355)
15 2ihy_A ABC transporter, ATP-bi 100.0 9.9E-43 3.4E-47 353.7 19.5 221 145-377 20-250 (279)
16 2d2e_A SUFC protein; ABC-ATPas 100.0 1.5E-42 5E-47 347.0 19.6 220 146-375 3-229 (250)
17 1yqt_A RNAse L inhibitor; ATP- 100.0 4.5E-43 1.5E-47 386.3 17.4 316 150-536 25-358 (538)
18 2zu0_C Probable ATP-dependent 100.0 3.2E-42 1.1E-46 347.8 22.1 221 146-376 20-251 (267)
19 2it1_A 362AA long hypothetical 100.0 1.3E-42 4.5E-47 364.3 19.6 214 146-376 3-220 (362)
20 2yz2_A Putative ABC transporte 100.0 2.2E-42 7.5E-47 348.8 20.1 215 146-377 2-225 (266)
21 3bk7_A ABC transporter ATP-bin 100.0 7E-43 2.4E-47 389.2 16.5 316 150-536 95-428 (607)
22 1v43_A Sugar-binding transport 100.0 1.8E-42 6.3E-47 364.4 18.8 214 146-376 11-228 (372)
23 3d31_A Sulfate/molybdate ABC t 100.0 2.7E-42 9.2E-47 360.3 19.0 210 146-376 1-214 (348)
24 1g29_1 MALK, maltose transport 100.0 3.4E-42 1.2E-46 362.7 19.9 216 146-376 3-226 (372)
25 2yyz_A Sugar ABC transporter, 100.0 8E-43 2.7E-47 365.5 14.7 212 146-376 3-220 (359)
26 1oxx_K GLCV, glucose, ABC tran 100.0 5.4E-43 1.9E-47 366.5 11.9 214 146-376 3-227 (353)
27 2nq2_C Hypothetical ABC transp 100.0 1.8E-41 6.1E-46 339.8 22.1 196 146-377 4-215 (253)
28 2onk_A Molybdate/tungstate ABC 100.0 2.8E-42 9.5E-47 343.1 13.9 210 146-377 1-214 (240)
29 2pjz_A Hypothetical protein ST 100.0 2E-41 6.9E-46 341.2 20.0 206 146-376 1-212 (263)
30 2ff7_A Alpha-hemolysin translo 100.0 2.2E-41 7.5E-46 338.0 19.0 209 146-377 7-230 (247)
31 2ixe_A Antigen peptide transpo 100.0 2.3E-41 7.9E-46 342.3 16.3 211 146-377 16-243 (271)
32 3nh6_A ATP-binding cassette SU 100.0 2.4E-40 8.1E-45 340.1 23.1 211 146-378 53-276 (306)
33 2qi9_C Vitamin B12 import ATP- 100.0 1.8E-40 6.2E-45 331.8 20.5 207 146-377 4-220 (249)
34 1mv5_A LMRA, multidrug resista 100.0 6.1E-41 2.1E-45 333.8 13.0 211 146-377 1-224 (243)
35 2ghi_A Transport protein; mult 100.0 4E-40 1.4E-44 331.3 17.9 209 146-377 17-240 (260)
36 1sgw_A Putative ABC transporte 100.0 1E-40 3.5E-45 326.3 9.8 199 145-367 9-210 (214)
37 3gd7_A Fusion complex of cysti 100.0 1.1E-39 3.7E-44 345.3 17.3 207 145-376 18-239 (390)
38 3g5u_A MCG1178, multidrug resi 100.0 8.8E-39 3E-43 383.1 27.5 212 146-379 387-613 (1284)
39 2pze_A Cystic fibrosis transme 100.0 1.8E-38 6.2E-43 313.3 24.6 190 146-377 6-216 (229)
40 2cbz_A Multidrug resistance-as 100.0 7.4E-39 2.5E-43 317.8 21.1 195 146-377 3-215 (237)
41 3ozx_A RNAse L inhibitor; ATP 100.0 4.8E-39 1.7E-43 353.8 11.9 309 151-536 4-341 (538)
42 3j16_B RLI1P; ribosome recycli 100.0 5.6E-38 1.9E-42 349.4 19.4 316 151-535 82-423 (608)
43 3b5x_A Lipid A export ATP-bind 100.0 6E-37 2.1E-41 340.7 22.3 213 145-378 340-566 (582)
44 3b60_A Lipid A export ATP-bind 100.0 1.5E-36 5.1E-41 337.6 21.7 211 146-378 341-566 (582)
45 3qf4_A ABC transporter, ATP-bi 100.0 2.6E-36 8.7E-41 336.0 22.6 212 146-379 341-566 (587)
46 2yl4_A ATP-binding cassette SU 100.0 4.8E-36 1.7E-40 334.3 22.1 211 147-377 342-568 (595)
47 4a82_A Cystic fibrosis transme 100.0 3.4E-36 1.2E-40 334.5 20.6 211 146-378 339-563 (578)
48 2bbs_A Cystic fibrosis transme 100.0 7.5E-36 2.6E-40 304.7 21.4 187 146-377 40-245 (290)
49 3qf4_B Uncharacterized ABC tra 100.0 1.7E-36 5.7E-41 338.2 18.0 210 146-378 354-577 (598)
50 2iw3_A Elongation factor 3A; a 100.0 1.7E-35 5.7E-40 341.6 19.7 228 145-375 670-984 (986)
51 1yqt_A RNAse L inhibitor; ATP- 100.0 1E-34 3.5E-39 319.8 22.6 192 145-375 286-489 (538)
52 3bk7_A ABC transporter ATP-bin 100.0 2.3E-34 7.8E-39 320.7 23.6 191 145-375 356-559 (607)
53 3ozx_A RNAse L inhibitor; ATP 100.0 4.7E-35 1.6E-39 322.1 17.8 196 145-370 268-469 (538)
54 3ux8_A Excinuclease ABC, A sub 100.0 5.4E-35 1.9E-39 330.0 16.2 102 274-377 184-296 (670)
55 4f4c_A Multidrug resistance pr 100.0 3.4E-34 1.2E-38 344.2 15.8 213 146-379 1076-1304(1321)
56 3j16_B RLI1P; ribosome recycli 100.0 1.5E-33 5E-38 313.9 17.8 191 150-377 350-558 (608)
57 3g5u_A MCG1178, multidrug resi 100.0 9.8E-34 3.4E-38 339.5 14.7 214 145-378 1029-1257(1284)
58 4f4c_A Multidrug resistance pr 100.0 1.1E-32 3.9E-37 331.0 21.6 210 146-378 415-640 (1321)
59 3ux8_A Excinuclease ABC, A sub 100.0 1E-30 3.5E-35 295.1 22.6 107 269-377 520-638 (670)
60 2vf7_A UVRA2, excinuclease ABC 100.0 3E-29 1E-33 287.0 19.3 108 269-378 707-826 (842)
61 4aby_A DNA repair protein RECN 100.0 2.5E-29 8.7E-34 267.0 16.0 77 293-370 296-380 (415)
62 2r6f_A Excinuclease ABC subuni 100.0 1E-27 3.5E-32 275.1 23.1 107 270-378 823-941 (972)
63 3pih_A Uvrabc system protein A 100.0 1.1E-27 3.8E-32 276.1 23.2 107 269-377 782-900 (916)
64 2ygr_A Uvrabc system protein A 100.0 1.7E-27 5.7E-32 274.3 22.2 107 270-378 841-959 (993)
65 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 1.7E-26 5.9E-31 242.7 18.1 82 287-369 274-364 (365)
66 2npi_A Protein CLP1; CLP1-PCF1 99.9 1.1E-30 3.6E-35 282.4 -21.5 198 145-376 117-335 (460)
67 1e69_A Chromosome segregation 99.9 2.4E-25 8.2E-30 229.8 9.6 89 286-375 213-309 (322)
68 4gp7_A Metallophosphoesterase; 99.9 3.5E-25 1.2E-29 208.0 9.1 145 164-354 1-164 (171)
69 1ye8_A Protein THEP1, hypothet 99.9 1.7E-24 6E-29 205.3 5.5 82 285-370 69-160 (178)
70 2vf7_A UVRA2, excinuclease ABC 99.9 5.7E-23 1.9E-27 235.2 14.3 198 270-536 358-595 (842)
71 3b85_A Phosphate starvation-in 99.9 1E-25 3.6E-30 219.1 -7.1 160 155-366 9-171 (208)
72 3qkt_A DNA double-strand break 99.9 3.5E-22 1.2E-26 207.6 16.0 81 286-367 242-333 (339)
73 2ygr_A Uvrabc system protein A 99.9 6.7E-22 2.3E-26 227.9 15.6 196 274-536 503-728 (993)
74 3pih_A Uvrabc system protein A 99.9 1.5E-21 5.3E-26 225.1 15.9 106 271-378 443-559 (916)
75 2o5v_A DNA replication and rep 99.9 9.3E-21 3.2E-25 198.5 19.4 83 287-374 259-351 (359)
76 2r6f_A Excinuclease ABC subuni 99.9 8.3E-22 2.8E-26 226.4 11.7 196 274-536 486-710 (972)
77 2v9p_A Replication protein E1; 99.8 1.6E-24 5.4E-29 222.1 -20.3 162 146-377 101-264 (305)
78 1tq4_A IIGP1, interferon-induc 99.8 2E-23 6.8E-28 222.3 -12.8 167 159-360 36-248 (413)
79 1tf7_A KAIC; homohexamer, hexa 99.8 2.6E-21 8.8E-26 212.4 2.5 151 166-366 275-444 (525)
80 1tf7_A KAIC; homohexamer, hexa 99.8 3.1E-22 1.1E-26 219.7 -5.8 179 147-366 13-211 (525)
81 1znw_A Guanylate kinase, GMP k 99.8 4E-23 1.4E-27 199.4 -14.5 76 276-363 119-202 (207)
82 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 2.8E-19 9.6E-24 164.7 11.7 81 286-367 51-142 (148)
83 2o8b_B DNA mismatch repair pro 99.8 5E-20 1.7E-24 215.5 7.6 165 145-369 749-931 (1022)
84 1cr0_A DNA primase/helicase; R 99.8 1.1E-19 3.7E-24 184.5 8.8 181 159-367 22-237 (296)
85 2obl_A ESCN; ATPase, hydrolase 99.8 3.8E-21 1.3E-25 200.7 -2.2 192 146-370 45-247 (347)
86 3thx_A DNA mismatch repair pro 99.8 1.2E-19 4.1E-24 210.2 9.3 155 146-369 631-804 (934)
87 3b9q_A Chloroplast SRP recepto 99.8 2.8E-20 9.6E-25 190.6 3.1 182 162-367 90-284 (302)
88 2pt7_A CAG-ALFA; ATPase, prote 99.8 1.4E-21 4.6E-26 202.8 -7.0 133 160-366 159-291 (330)
89 1w1w_A Structural maintenance 99.8 1.6E-18 5.5E-23 185.5 15.1 75 288-363 329-410 (430)
90 1z6g_A Guanylate kinase; struc 99.8 2.1E-22 7.2E-27 196.5 -14.1 179 159-359 10-204 (218)
91 3thx_B DNA mismatch repair pro 99.8 2.5E-19 8.5E-24 207.0 6.8 145 146-357 640-803 (918)
92 3aez_A Pantothenate kinase; tr 99.8 4.2E-22 1.4E-26 205.1 -15.1 165 146-351 43-230 (312)
93 2ehv_A Hypothetical protein PH 99.8 1.7E-18 5.7E-23 169.7 10.3 71 293-363 118-206 (251)
94 2og2_A Putative signal recogni 99.7 3E-19 1E-23 186.9 4.4 181 163-367 148-341 (359)
95 2dpy_A FLII, flagellum-specifi 99.7 3.4E-20 1.1E-24 199.2 -4.0 186 145-370 130-336 (438)
96 4a74_A DNA repair and recombin 99.7 5.6E-18 1.9E-22 163.9 11.9 73 293-365 100-200 (231)
97 1ewq_A DNA mismatch repair pro 99.7 6.9E-18 2.3E-22 192.1 10.5 146 146-356 550-704 (765)
98 2w0m_A SSO2452; RECA, SSPF, un 99.7 7.4E-18 2.5E-22 162.8 8.4 168 159-366 9-193 (235)
99 2eyu_A Twitching motility prot 99.7 2.4E-19 8.3E-24 180.0 -3.9 138 148-362 7-145 (261)
100 2jeo_A Uridine-cytidine kinase 99.7 2.9E-18 9.8E-23 169.7 2.7 165 155-359 8-176 (245)
101 2i3b_A HCR-ntpase, human cance 99.7 7.4E-19 2.5E-23 168.2 -1.8 86 287-376 78-175 (189)
102 3kta_B Chromosome segregation 99.7 2.1E-16 7E-21 149.2 14.5 94 287-381 59-160 (173)
103 3sop_A Neuronal-specific septi 99.7 4.1E-19 1.4E-23 179.2 -9.2 149 174-351 4-152 (270)
104 1nlf_A Regulatory protein REPA 99.6 3.7E-16 1.2E-20 157.4 11.7 142 168-353 26-185 (279)
105 2cvh_A DNA repair and recombin 99.6 1.4E-15 4.7E-20 146.1 14.1 149 161-365 8-185 (220)
106 1wb9_A DNA mismatch repair pro 99.6 1.8E-16 6.3E-21 181.3 8.5 154 146-367 577-747 (800)
107 2qnr_A Septin-2, protein NEDD5 99.6 1.7E-18 5.8E-23 177.2 -8.7 166 150-350 2-168 (301)
108 1pui_A ENGB, probable GTP-bind 99.6 2.2E-17 7.4E-22 157.6 -2.0 176 146-338 3-196 (210)
109 4ad8_A DNA repair protein RECN 99.6 1.4E-15 4.8E-20 166.5 9.4 77 288-365 392-473 (517)
110 3asz_A Uridine kinase; cytidin 99.6 1.9E-18 6.6E-23 166.0 -13.5 145 169-350 3-162 (211)
111 1pzn_A RAD51, DNA repair and r 99.6 3.8E-15 1.3E-19 155.5 8.3 158 161-368 119-305 (349)
112 3jvv_A Twitching mobility prot 99.6 2.7E-16 9.3E-21 164.5 -0.5 57 302-363 188-244 (356)
113 3auy_A DNA double-strand break 99.5 6E-14 2.1E-18 147.3 11.9 75 288-363 276-359 (371)
114 1n0w_A DNA repair protein RAD5 99.5 3E-13 1E-17 131.7 15.2 28 168-195 20-47 (243)
115 2qag_C Septin-7; cell cycle, c 99.5 1.5E-14 5.3E-19 154.2 3.9 163 146-350 11-178 (418)
116 1rj9_A FTSY, signal recognitio 99.4 7.5E-14 2.5E-18 143.0 6.5 156 171-350 101-259 (304)
117 3szr_A Interferon-induced GTP- 99.4 6.6E-16 2.2E-20 172.4 -12.9 179 146-367 10-226 (608)
118 1lw7_A Transcriptional regulat 99.4 5.3E-15 1.8E-19 154.9 -6.2 161 161-362 157-341 (365)
119 2ewv_A Twitching motility prot 99.4 4E-14 1.4E-18 149.0 -0.5 129 160-361 126-255 (372)
120 3lda_A DNA repair protein RAD5 99.3 1.5E-11 5.1E-16 130.5 14.3 57 309-365 272-363 (400)
121 1zp6_A Hypothetical protein AT 99.3 5.3E-14 1.8E-18 132.5 -5.1 161 168-359 5-169 (191)
122 3ec2_A DNA replication protein 99.3 7.5E-13 2.6E-17 124.0 1.4 42 309-350 99-144 (180)
123 2bbw_A Adenylate kinase 4, AK4 99.2 2.3E-12 7.8E-17 127.0 4.0 47 285-338 145-196 (246)
124 2qag_B Septin-6, protein NEDD5 99.2 1.1E-12 3.9E-17 139.7 1.7 169 147-348 17-218 (427)
125 2bdt_A BH3686; alpha-beta prot 99.2 8.8E-15 3E-19 138.1 -15.0 75 294-375 96-180 (189)
126 1s96_A Guanylate kinase, GMP k 99.2 7.7E-12 2.6E-16 122.1 4.8 51 304-365 101-151 (219)
127 1udx_A The GTP-binding protein 99.2 2.1E-12 7.2E-17 137.6 0.6 146 162-346 147-305 (416)
128 2gza_A Type IV secretion syste 99.2 9.1E-13 3.1E-17 138.0 -2.9 153 148-366 137-303 (361)
129 1nij_A Hypothetical protein YJ 99.2 1.4E-13 4.7E-18 141.7 -10.1 54 292-356 141-196 (318)
130 1htw_A HI0065; nucleotide-bind 99.1 2.6E-13 8.8E-18 126.0 -8.1 61 149-212 10-70 (158)
131 2kjq_A DNAA-related protein; s 99.1 3.2E-11 1.1E-15 110.6 5.8 41 307-348 80-124 (149)
132 2qm8_A GTPase/ATPase; G protei 99.1 2.5E-13 8.5E-18 141.0 -12.0 65 146-212 29-93 (337)
133 2dr3_A UPF0273 protein PH0284; 99.1 1.2E-09 4.3E-14 106.0 13.4 56 309-364 127-196 (247)
134 3e70_C DPA, signal recognition 99.1 1.3E-10 4.6E-15 120.0 6.7 170 169-367 126-306 (328)
135 1ls1_A Signal recognition part 99.0 2.1E-10 7.1E-15 116.9 7.5 130 148-337 78-208 (295)
136 1vma_A Cell division protein F 99.0 2.6E-10 8.8E-15 116.8 7.4 98 165-321 97-197 (306)
137 1p9r_A General secretion pathw 99.0 1.1E-12 3.6E-17 140.0 -11.0 157 146-316 143-315 (418)
138 1odf_A YGR205W, hypothetical 3 99.0 2.2E-11 7.5E-16 123.8 -2.5 39 288-326 130-168 (290)
139 2px0_A Flagellar biosynthesis 99.0 7.1E-10 2.4E-14 113.0 8.6 137 170-370 103-247 (296)
140 2yhs_A FTSY, cell division pro 99.0 1.7E-10 5.9E-15 124.7 3.9 49 162-212 283-331 (503)
141 1sxj_E Activator 1 40 kDa subu 99.0 1.1E-09 3.6E-14 112.9 9.3 44 307-351 131-176 (354)
142 2f1r_A Molybdopterin-guanine d 98.9 1.4E-11 5E-16 115.7 -5.6 38 173-212 3-43 (171)
143 3c8u_A Fructokinase; YP_612366 98.9 2.3E-12 7.7E-17 124.0 -12.1 27 169-195 19-45 (208)
144 2x8a_A Nuclear valosin-contain 98.9 3.8E-12 1.3E-16 128.3 -11.1 150 156-336 30-191 (274)
145 2oap_1 GSPE-2, type II secreti 98.9 2.1E-12 7.3E-17 141.1 -14.3 49 160-210 248-296 (511)
146 2zr9_A Protein RECA, recombina 98.9 8.8E-09 3E-13 107.3 12.4 68 300-367 127-232 (349)
147 2rcn_A Probable GTPase ENGC; Y 98.8 5.3E-10 1.8E-14 116.7 1.0 122 161-307 205-328 (358)
148 2r6a_A DNAB helicase, replicat 98.8 2.5E-09 8.7E-14 115.0 6.1 176 160-367 191-401 (454)
149 2ius_A DNA translocase FTSK; n 98.7 4.4E-10 1.5E-14 122.4 -2.7 174 164-361 159-361 (512)
150 1ni3_A YCHF GTPase, YCHF GTP-b 98.7 9.9E-12 3.4E-16 131.4 -15.5 64 310-376 139-210 (392)
151 3euj_A Chromosome partition pr 98.7 2.1E-09 7.1E-14 116.3 2.2 51 159-212 17-67 (483)
152 1in4_A RUVB, holliday junction 98.7 4.3E-12 1.5E-16 131.1 -19.1 179 147-358 19-211 (334)
153 3nwj_A ATSK2; P loop, shikimat 98.6 1.9E-09 6.6E-14 107.2 -2.4 49 146-194 17-70 (250)
154 1sq5_A Pantothenate kinase; P- 98.6 6.1E-10 2.1E-14 113.9 -6.8 60 146-207 37-115 (308)
155 1jjv_A Dephospho-COA kinase; P 98.6 2.3E-08 7.8E-13 95.2 4.2 69 293-363 60-131 (206)
156 2yv5_A YJEQ protein; hydrolase 98.6 1.1E-09 3.9E-14 111.7 -6.2 126 169-305 162-300 (302)
157 3lnc_A Guanylate kinase, GMP k 98.5 1.8E-08 6E-13 98.0 2.3 36 160-195 15-51 (231)
158 3tr0_A Guanylate kinase, GMP k 98.5 4.1E-08 1.4E-12 92.9 3.6 30 166-195 1-30 (205)
159 3nh6_A ATP-binding cassette SU 98.5 4E-08 1.4E-12 100.5 3.5 74 465-538 52-141 (306)
160 3k1j_A LON protease, ATP-depen 98.4 4.9E-08 1.7E-12 108.7 2.5 168 151-337 39-227 (604)
161 2pze_A Cystic fibrosis transme 98.4 6.9E-08 2.4E-12 94.5 3.0 72 465-538 5-82 (229)
162 3gfo_A Cobalt import ATP-bindi 98.4 7E-08 2.4E-12 97.2 3.0 70 465-534 6-93 (275)
163 2ce7_A Cell division protein F 98.4 7.8E-08 2.7E-12 104.0 3.4 59 295-353 93-168 (476)
164 1oix_A RAS-related protein RAB 98.4 4.9E-09 1.7E-13 98.8 -5.9 36 300-337 153-188 (191)
165 1mv5_A LMRA, multidrug resista 98.4 9.6E-08 3.3E-12 94.3 3.2 73 466-538 1-89 (243)
166 1g6h_A High-affinity branched- 98.4 8.6E-08 2.9E-12 95.4 2.5 73 464-537 5-94 (257)
167 1ji0_A ABC transporter; ATP bi 98.4 8.8E-08 3E-12 94.4 2.4 73 464-537 4-93 (240)
168 2ihy_A ABC transporter, ATP-bi 98.4 9E-08 3.1E-12 96.6 1.9 72 463-535 18-107 (279)
169 1qhl_A Protein (cell division 98.4 6.3E-09 2.1E-13 102.0 -6.4 57 146-212 9-65 (227)
170 2e87_A Hypothetical protein PH 98.4 9.8E-07 3.3E-11 91.7 9.8 62 288-350 227-293 (357)
171 1vpl_A ABC transporter, ATP-bi 98.4 1.1E-07 3.7E-12 94.8 2.4 73 464-537 13-100 (256)
172 2cbz_A Multidrug resistance-as 98.3 1.1E-07 3.7E-12 93.6 2.1 70 466-537 3-78 (237)
173 2ixe_A Antigen peptide transpo 98.3 1.5E-07 5E-12 94.6 2.9 74 465-538 15-106 (271)
174 3kta_A Chromosome segregation 98.3 3.5E-07 1.2E-11 85.1 5.0 34 161-195 14-49 (182)
175 1b0u_A Histidine permease; ABC 98.3 1.7E-07 6E-12 93.6 3.0 72 465-537 5-105 (262)
176 2xau_A PRE-mRNA-splicing facto 98.3 3.3E-07 1.1E-11 104.8 5.6 71 288-358 186-261 (773)
177 2pcj_A ABC transporter, lipopr 98.3 1.4E-07 4.6E-12 92.1 2.1 72 465-537 3-94 (224)
178 2olj_A Amino acid ABC transpor 98.3 1.7E-07 6E-12 93.7 2.8 72 465-537 23-112 (263)
179 3tif_A Uncharacterized ABC tra 98.3 1.5E-07 5E-12 92.6 2.1 73 466-538 1-96 (235)
180 2ff7_A Alpha-hemolysin translo 98.3 1.5E-07 5.2E-12 93.2 2.1 73 466-538 7-96 (247)
181 1v5w_A DMC1, meiotic recombina 98.3 3.1E-06 1.1E-10 87.6 11.9 28 168-195 118-145 (343)
182 1sgw_A Putative ABC transporte 98.3 2.1E-07 7.1E-12 90.3 2.8 72 464-537 8-90 (214)
183 4g1u_C Hemin import ATP-bindin 98.3 2.7E-07 9.3E-12 92.4 3.5 72 464-536 9-96 (266)
184 2nq2_C Hypothetical ABC transp 98.3 2.6E-07 8.8E-12 91.9 3.2 70 466-537 4-78 (253)
185 2f9l_A RAB11B, member RAS onco 98.3 4.6E-08 1.6E-12 92.3 -2.5 35 301-337 130-164 (199)
186 1fnn_A CDC6P, cell division co 98.2 5.2E-06 1.8E-10 85.7 12.3 47 309-356 124-176 (389)
187 4a1f_A DNAB helicase, replicat 98.2 1.5E-06 5.1E-11 90.0 8.0 126 162-346 36-163 (338)
188 3tui_C Methionine import ATP-b 98.2 2.7E-07 9.3E-12 96.4 2.2 77 462-538 20-118 (366)
189 3hr8_A Protein RECA; alpha and 98.2 1.3E-05 4.4E-10 83.5 14.6 41 168-210 57-97 (356)
190 2yz2_A Putative ABC transporte 98.2 4.3E-07 1.5E-11 90.8 3.0 69 466-534 2-87 (266)
191 3uie_A Adenylyl-sulfate kinase 98.2 1.5E-07 5E-12 89.5 -0.5 46 150-195 3-48 (200)
192 2z43_A DNA repair and recombin 98.2 8E-06 2.7E-10 83.7 12.5 27 168-194 103-129 (324)
193 3vaa_A Shikimate kinase, SK; s 98.2 7.8E-07 2.7E-11 84.3 3.8 37 159-195 12-48 (199)
194 1lvg_A Guanylate kinase, GMP k 98.2 6.2E-07 2.1E-11 85.4 2.9 56 303-363 116-172 (198)
195 3qf4_B Uncharacterized ABC tra 98.1 9.3E-07 3.2E-11 98.3 3.8 74 465-538 353-442 (598)
196 1z47_A CYSA, putative ABC-tran 98.1 6.3E-07 2.2E-11 93.4 2.3 76 462-537 10-99 (355)
197 3fvq_A Fe(3+) IONS import ATP- 98.1 6.1E-07 2.1E-11 93.6 2.0 72 465-537 3-92 (359)
198 2j41_A Guanylate kinase; GMP, 98.1 1.1E-06 3.8E-11 82.8 3.7 29 167-195 1-29 (207)
199 2ghi_A Transport protein; mult 98.1 7.8E-07 2.7E-11 88.7 2.3 73 465-538 16-106 (260)
200 3b5x_A Lipid A export ATP-bind 98.1 1.4E-06 4.9E-11 96.4 4.6 74 465-538 340-430 (582)
201 4a82_A Cystic fibrosis transme 98.1 1.3E-06 4.5E-11 96.6 4.2 74 465-538 338-428 (578)
202 3a00_A Guanylate kinase, GMP k 98.1 1.2E-06 4.1E-11 82.2 3.0 24 172-195 1-24 (186)
203 2pjz_A Hypothetical protein ST 98.1 5.7E-07 1.9E-11 90.0 0.8 70 466-536 1-86 (263)
204 2zu0_C Probable ATP-dependent 98.1 6.2E-07 2.1E-11 89.8 0.5 74 463-537 17-109 (267)
205 3b60_A Lipid A export ATP-bind 98.0 1.6E-06 5.4E-11 96.1 3.4 74 465-538 340-430 (582)
206 3tqc_A Pantothenate kinase; bi 98.0 1.1E-07 3.7E-12 97.9 -5.6 62 151-212 65-132 (321)
207 4eun_A Thermoresistant glucoki 98.0 2.3E-06 7.8E-11 81.1 3.8 34 162-195 19-52 (200)
208 2qtf_A Protein HFLX, GTP-bindi 98.0 1.6E-06 5.5E-11 90.7 2.8 62 272-337 281-350 (364)
209 2yyz_A Sugar ABC transporter, 98.0 1.4E-06 4.8E-11 90.9 2.3 71 466-537 3-87 (359)
210 1u0l_A Probable GTPase ENGC; p 98.0 2.6E-06 8.9E-11 86.6 4.0 43 168-212 165-210 (301)
211 1kgd_A CASK, peripheral plasma 98.0 2.7E-06 9.4E-11 79.4 3.8 25 171-195 4-28 (180)
212 3qf4_A ABC transporter, ATP-bi 98.0 2.5E-06 8.6E-11 94.6 4.1 75 464-538 339-430 (587)
213 2it1_A 362AA long hypothetical 98.0 1.6E-06 5.5E-11 90.6 2.4 71 466-537 3-87 (362)
214 3rlf_A Maltose/maltodextrin im 98.0 2E-06 6.8E-11 90.4 2.8 71 466-537 3-87 (381)
215 1v43_A Sugar-binding transport 98.0 1.6E-06 5.4E-11 90.9 2.1 71 466-537 11-95 (372)
216 2yl4_A ATP-binding cassette SU 98.0 2.2E-06 7.6E-11 95.1 3.2 72 467-538 342-431 (595)
217 2d2e_A SUFC protein; ABC-ATPas 98.0 9.9E-07 3.4E-11 87.4 0.1 71 466-537 3-92 (250)
218 3t34_A Dynamin-related protein 98.0 6.8E-06 2.3E-10 85.3 6.5 36 159-197 24-59 (360)
219 3lxx_A GTPase IMAP family memb 98.0 2.8E-05 9.5E-10 75.5 10.4 40 308-347 110-154 (239)
220 2qby_A CDC6 homolog 1, cell di 98.0 3.1E-06 1.1E-10 86.9 3.6 46 310-355 128-179 (386)
221 3kl4_A SRP54, signal recogniti 97.9 2.5E-05 8.4E-10 83.4 9.9 40 171-212 96-135 (433)
222 2onk_A Molybdate/tungstate ABC 97.9 2.1E-06 7.1E-11 84.7 1.4 68 466-537 1-82 (240)
223 1oxx_K GLCV, glucose, ABC tran 97.9 3E-06 1E-10 88.3 2.5 71 466-537 3-94 (353)
224 2bbs_A Cystic fibrosis transme 97.9 1.3E-06 4.4E-11 88.6 -0.3 70 464-538 38-112 (290)
225 1ixz_A ATP-dependent metallopr 97.9 2.2E-07 7.5E-12 91.3 -5.9 46 148-195 27-72 (254)
226 3d31_A Sulfate/molybdate ABC t 97.9 3.4E-06 1.2E-10 87.7 2.6 70 466-537 1-84 (348)
227 3bh0_A DNAB-like replicative h 97.9 8.6E-06 2.9E-10 83.2 5.5 130 161-347 57-189 (315)
228 1g29_1 MALK, maltose transport 97.9 3.5E-06 1.2E-10 88.3 2.4 71 466-537 3-93 (372)
229 1iy2_A ATP-dependent metallopr 97.9 2.9E-07 9.9E-12 92.0 -5.8 57 148-210 51-107 (278)
230 2ffh_A Protein (FFH); SRP54, s 97.9 1.9E-05 6.5E-10 84.1 7.6 56 151-212 81-136 (425)
231 4e22_A Cytidylate kinase; P-lo 97.9 5.6E-06 1.9E-10 81.8 3.3 31 160-193 18-48 (252)
232 1t9h_A YLOQ, probable GTPase E 97.8 1.3E-06 4.5E-11 89.2 -1.6 39 167-207 168-206 (307)
233 2vp4_A Deoxynucleoside kinase; 97.8 4.9E-06 1.7E-10 80.8 2.2 40 166-211 14-53 (230)
234 1svm_A Large T antigen; AAA+ f 97.8 2.3E-06 8E-11 89.8 -0.1 36 160-195 157-192 (377)
235 3b9p_A CG5977-PA, isoform A; A 97.8 0.00014 4.8E-09 72.6 13.0 57 294-350 97-170 (297)
236 3tau_A Guanylate kinase, GMP k 97.8 1.1E-05 3.7E-10 77.1 3.6 26 170-195 6-31 (208)
237 2z4s_A Chromosomal replication 97.7 1E-05 3.6E-10 86.5 3.1 41 309-349 193-237 (440)
238 1u94_A RECA protein, recombina 97.7 0.00023 7.8E-09 74.1 13.1 26 169-194 60-85 (356)
239 2qi9_C Vitamin B12 import ATP- 97.7 6.7E-06 2.3E-10 81.4 1.4 66 466-537 4-85 (249)
240 2dy1_A Elongation factor G; tr 97.7 8E-06 2.7E-10 91.9 1.9 46 304-351 93-138 (665)
241 1knq_A Gluconate kinase; ALFA/ 97.7 1.6E-05 5.3E-10 73.2 3.4 26 170-195 6-31 (175)
242 1kag_A SKI, shikimate kinase I 97.7 1.5E-05 5.1E-10 73.0 3.0 25 171-195 3-27 (173)
243 1f2t_A RAD50 ABC-ATPase; DNA d 97.7 2.2E-05 7.6E-10 71.4 4.0 29 164-193 16-44 (149)
244 1ypw_A Transitional endoplasmi 97.6 4.9E-05 1.7E-09 87.3 6.8 30 166-195 232-261 (806)
245 3ney_A 55 kDa erythrocyte memb 97.6 2.4E-05 8E-10 74.9 3.2 30 166-195 13-42 (197)
246 3ice_A Transcription terminati 97.6 7.2E-06 2.4E-10 86.0 -0.8 49 146-194 133-196 (422)
247 3gd7_A Fusion complex of cysti 97.6 1.6E-05 5.6E-10 83.7 1.8 74 464-538 17-107 (390)
248 1zu4_A FTSY; GTPase, signal re 97.6 1E-05 3.5E-10 83.1 0.1 49 162-212 95-143 (320)
249 2i1q_A DNA repair and recombin 97.5 0.00026 9.1E-09 72.0 9.8 27 168-194 94-120 (322)
250 1rz3_A Hypothetical protein rb 97.5 4.1E-05 1.4E-09 72.6 3.2 42 169-212 19-60 (201)
251 4fcw_A Chaperone protein CLPB; 97.5 0.00011 3.7E-09 73.7 6.4 35 303-338 111-146 (311)
252 2p67_A LAO/AO transport system 97.5 1.6E-06 5.5E-11 89.7 -7.4 62 147-210 31-92 (341)
253 2qt1_A Nicotinamide riboside k 97.5 3.6E-05 1.2E-09 73.0 2.2 28 168-195 17-44 (207)
254 3cf0_A Transitional endoplasmi 97.4 0.00023 7.8E-09 71.9 7.8 29 167-195 44-72 (301)
255 3qks_A DNA double-strand break 97.4 0.0001 3.5E-09 70.4 4.0 29 164-193 16-44 (203)
256 1cke_A CK, MSSA, protein (cyti 97.4 8.8E-05 3E-09 70.9 3.6 24 172-195 5-28 (227)
257 4eaq_A DTMP kinase, thymidylat 97.3 0.0001 3.5E-09 71.7 3.1 35 161-195 12-49 (229)
258 2pez_A Bifunctional 3'-phospho 97.3 0.00013 4.4E-09 67.4 3.5 26 170-195 3-28 (179)
259 4ad8_A DNA repair protein RECN 97.3 5.6E-05 1.9E-09 82.4 1.2 33 161-194 50-82 (517)
260 2if2_A Dephospho-COA kinase; a 97.3 0.00012 4E-09 69.0 3.1 21 174-194 3-23 (204)
261 1j8m_F SRP54, signal recogniti 97.2 0.00056 1.9E-08 69.3 8.3 58 150-212 78-136 (297)
262 1y63_A LMAJ004144AAA protein; 97.2 0.00014 4.6E-09 67.9 2.9 31 164-194 2-32 (184)
263 3auy_A DNA double-strand break 97.2 0.00026 9E-09 73.7 5.3 43 147-193 3-46 (371)
264 1xp8_A RECA protein, recombina 97.2 0.0034 1.1E-07 65.5 13.7 27 168-194 70-96 (366)
265 3cr8_A Sulfate adenylyltranfer 97.2 7.5E-05 2.6E-09 82.1 1.1 28 168-195 365-392 (552)
266 3lxw_A GTPase IMAP family memb 97.2 0.00084 2.9E-08 65.8 8.4 23 174-196 23-45 (247)
267 2gj8_A MNME, tRNA modification 97.1 0.00021 7.2E-09 65.5 3.2 27 170-196 2-28 (172)
268 2q6t_A DNAB replication FORK h 97.1 0.001 3.6E-08 70.9 8.8 129 161-347 189-318 (444)
269 2qag_A Septin-2, protein NEDD5 97.1 3.3E-05 1.1E-09 80.5 -3.0 45 146-196 17-61 (361)
270 2qor_A Guanylate kinase; phosp 97.1 0.00025 8.5E-09 67.2 3.3 28 168-195 8-35 (204)
271 3m6a_A ATP-dependent protease 97.0 2E-05 6.8E-10 86.6 -5.6 46 149-195 86-131 (543)
272 1l8q_A Chromosomal replication 97.0 0.00027 9.3E-09 71.6 3.3 24 172-195 37-60 (324)
273 2www_A Methylmalonic aciduria 97.0 0.0002 6.8E-09 74.2 2.0 39 171-211 73-111 (349)
274 1m2o_B GTP-binding protein SAR 97.0 0.00034 1.2E-08 65.1 3.2 35 160-195 12-46 (190)
275 2wji_A Ferrous iron transport 96.9 0.00041 1.4E-08 62.8 3.5 22 174-195 5-26 (165)
276 1f6b_A SAR1; gtpases, N-termin 96.9 6.7E-05 2.3E-09 70.5 -2.0 42 153-195 6-48 (198)
277 3h4m_A Proteasome-activating n 96.9 0.0014 4.9E-08 64.7 7.4 27 169-195 48-74 (285)
278 2dhr_A FTSH; AAA+ protein, hex 96.9 0.00013 4.5E-09 79.3 -0.3 58 149-212 43-100 (499)
279 1sxj_C Activator 1 40 kDa subu 96.9 8.3E-05 2.8E-09 76.2 -1.8 44 152-195 24-69 (340)
280 1sxj_D Activator 1 41 kDa subu 96.9 0.00034 1.1E-08 71.2 2.4 40 310-350 133-174 (353)
281 3io5_A Recombination and repai 96.9 0.0034 1.2E-07 64.3 9.7 56 295-350 92-173 (333)
282 3cm0_A Adenylate kinase; ATP-b 96.9 0.00048 1.6E-08 63.6 3.1 25 170-194 2-26 (186)
283 1ega_A Protein (GTP-binding pr 96.9 0.00028 9.7E-09 71.4 1.7 61 293-360 101-170 (301)
284 3t61_A Gluconokinase; PSI-biol 96.8 0.00042 1.4E-08 65.2 2.7 24 172-195 18-41 (202)
285 2v1u_A Cell division control p 96.8 0.0016 5.4E-08 66.6 7.2 25 170-194 42-66 (387)
286 1q3t_A Cytidylate kinase; nucl 96.8 0.00062 2.1E-08 66.0 3.5 25 170-194 14-38 (236)
287 2yvu_A Probable adenylyl-sulfa 96.8 0.00066 2.3E-08 63.0 3.5 27 169-195 10-36 (186)
288 2wjg_A FEOB, ferrous iron tran 96.8 0.00069 2.3E-08 62.1 3.5 22 174-195 9-30 (188)
289 2ga8_A Hypothetical 39.9 kDa p 96.7 0.00015 5E-09 75.4 -1.4 36 160-195 10-47 (359)
290 2zej_A Dardarin, leucine-rich 96.7 0.00071 2.4E-08 62.4 3.2 22 174-195 4-25 (184)
291 3bgw_A DNAB-like replicative h 96.7 0.0059 2E-07 65.3 10.6 129 162-347 187-318 (444)
292 1mky_A Probable GTP-binding pr 96.7 0.0014 4.8E-08 69.8 5.7 39 174-212 182-230 (439)
293 2b8t_A Thymidine kinase; deoxy 96.7 0.0027 9.2E-08 61.7 7.2 52 310-363 89-150 (223)
294 2chg_A Replication factor C sm 96.6 0.0078 2.7E-07 55.8 9.8 41 309-350 101-143 (226)
295 3kb2_A SPBC2 prophage-derived 96.6 0.00097 3.3E-08 60.3 3.4 21 174-194 3-23 (173)
296 1m7g_A Adenylylsulfate kinase; 96.6 0.00099 3.4E-08 63.3 3.4 28 168-195 21-48 (211)
297 1lv7_A FTSH; alpha/beta domain 96.6 0.00061 2.1E-08 66.6 2.0 33 161-195 36-68 (257)
298 1q57_A DNA primase/helicase; d 96.6 0.016 5.5E-07 62.5 13.4 27 168-194 238-264 (503)
299 3dm5_A SRP54, signal recogniti 96.6 0.012 3.9E-07 62.9 11.7 24 171-194 99-122 (443)
300 4dcu_A GTP-binding protein ENG 96.5 0.003 1E-07 67.5 6.7 57 296-352 88-144 (456)
301 1qhx_A CPT, protein (chloramph 96.5 0.0016 5.4E-08 59.6 3.9 23 172-194 3-25 (178)
302 1np6_A Molybdopterin-guanine d 96.5 0.0014 4.9E-08 61.1 3.4 23 173-195 7-29 (174)
303 1kht_A Adenylate kinase; phosp 96.4 0.0017 5.7E-08 59.8 3.7 23 172-194 3-25 (192)
304 3lw7_A Adenylate kinase relate 96.4 0.0016 5.5E-08 58.6 3.3 20 174-193 3-22 (179)
305 3cmw_A Protein RECA, recombina 96.4 0.016 5.5E-07 71.0 13.0 26 169-194 729-754 (1706)
306 3cmw_A Protein RECA, recombina 96.4 0.013 4.3E-07 71.9 11.7 26 169-194 380-405 (1706)
307 1vht_A Dephospho-COA kinase; s 96.4 0.0018 6.1E-08 61.6 3.5 24 171-194 3-26 (218)
308 2jaq_A Deoxyguanosine kinase; 96.4 0.0018 6.3E-08 60.2 3.5 21 174-194 2-22 (205)
309 1via_A Shikimate kinase; struc 96.3 0.0017 5.9E-08 59.5 2.9 21 174-194 6-26 (175)
310 3r20_A Cytidylate kinase; stru 96.3 0.0021 7.2E-08 62.9 3.5 23 172-194 9-31 (233)
311 1xx6_A Thymidine kinase; NESG, 96.2 0.0072 2.5E-07 57.2 6.9 52 310-363 81-142 (191)
312 2ohf_A Protein OLA1, GTP-bindi 96.2 0.0015 5.3E-08 68.7 2.4 28 168-195 18-45 (396)
313 1ly1_A Polynucleotide kinase; 96.2 0.0026 9E-08 57.9 3.5 22 173-194 3-24 (181)
314 3k53_A Ferrous iron transport 96.2 0.0022 7.6E-08 63.4 3.2 44 319-362 144-191 (271)
315 2rhm_A Putative kinase; P-loop 96.2 0.0025 8.4E-08 58.9 3.3 24 171-194 4-27 (193)
316 1uf9_A TT1252 protein; P-loop, 96.2 0.0024 8.2E-08 59.5 3.2 22 173-194 9-30 (203)
317 2ze6_A Isopentenyl transferase 96.2 0.0025 8.4E-08 62.7 3.4 21 174-194 3-23 (253)
318 2v54_A DTMP kinase, thymidylat 96.2 0.0031 1.1E-07 58.8 3.9 25 171-195 3-27 (204)
319 3iij_A Coilin-interacting nucl 96.1 0.0026 8.8E-08 58.5 3.3 25 170-194 9-33 (180)
320 1ex7_A Guanylate kinase; subst 96.1 0.0026 8.8E-08 60.1 3.2 20 175-194 4-23 (186)
321 3trf_A Shikimate kinase, SK; a 96.1 0.003 1E-07 58.1 3.7 24 171-194 4-27 (185)
322 1gtv_A TMK, thymidylate kinase 96.1 0.0013 4.6E-08 61.8 1.3 21 174-194 2-22 (214)
323 2p5t_B PEZT; postsegregational 96.1 0.002 6.9E-08 63.2 2.5 28 168-195 28-55 (253)
324 3d8b_A Fidgetin-like protein 1 96.1 0.013 4.6E-07 60.3 8.7 25 171-195 116-140 (357)
325 2c95_A Adenylate kinase 1; tra 96.1 0.0033 1.1E-07 58.2 3.5 24 171-194 8-31 (196)
326 2plr_A DTMP kinase, probable t 96.0 0.0036 1.2E-07 58.6 3.7 24 171-194 3-26 (213)
327 1tev_A UMP-CMP kinase; ploop, 96.0 0.0035 1.2E-07 57.7 3.5 23 172-194 3-25 (196)
328 3ake_A Cytidylate kinase; CMP 96.0 0.0035 1.2E-07 58.5 3.3 21 174-194 4-24 (208)
329 2wwf_A Thymidilate kinase, put 96.0 0.0038 1.3E-07 58.6 3.5 25 170-194 8-32 (212)
330 1nn5_A Similar to deoxythymidy 95.9 0.0038 1.3E-07 58.6 3.4 26 169-194 6-31 (215)
331 2ged_A SR-beta, signal recogni 95.9 0.004 1.4E-07 57.2 3.4 23 173-195 49-71 (193)
332 1nks_A Adenylate kinase; therm 95.9 0.0039 1.3E-07 57.3 3.2 21 174-194 3-23 (194)
333 2z0h_A DTMP kinase, thymidylat 95.9 0.0042 1.4E-07 57.5 3.4 21 174-194 2-22 (197)
334 2vli_A Antibiotic resistance p 95.8 0.0035 1.2E-07 57.4 2.5 24 171-194 4-27 (183)
335 1z2a_A RAS-related protein RAB 95.8 0.0049 1.7E-07 54.8 3.3 23 174-196 7-29 (168)
336 1gvn_B Zeta; postsegregational 95.8 0.0041 1.4E-07 62.5 3.1 24 171-194 32-55 (287)
337 3b1v_A Ferrous iron uptake tra 95.8 0.0047 1.6E-07 61.6 3.5 22 174-195 5-26 (272)
338 2nzj_A GTP-binding protein REM 95.8 0.0054 1.9E-07 55.0 3.5 22 174-195 6-27 (175)
339 1xjc_A MOBB protein homolog; s 95.8 0.0051 1.8E-07 57.1 3.4 22 173-194 5-26 (169)
340 2erx_A GTP-binding protein DI- 95.7 0.0057 1.9E-07 54.5 3.5 22 174-195 5-26 (172)
341 2bwj_A Adenylate kinase 5; pho 95.7 0.0053 1.8E-07 56.9 3.4 25 170-194 10-34 (199)
342 3q72_A GTP-binding protein RAD 95.7 0.0043 1.5E-07 55.3 2.7 22 174-195 4-25 (166)
343 3fb4_A Adenylate kinase; psych 95.7 0.0054 1.8E-07 58.0 3.4 21 174-194 2-22 (216)
344 2dyk_A GTP-binding protein; GT 95.7 0.0056 1.9E-07 54.1 3.4 22 174-195 3-24 (161)
345 1fzq_A ADP-ribosylation factor 95.7 0.0043 1.5E-07 56.9 2.7 22 174-195 18-39 (181)
346 3q85_A GTP-binding protein REM 95.7 0.0058 2E-07 54.6 3.5 22 174-195 4-25 (169)
347 3euj_A Chromosome partition pr 95.7 0.014 4.9E-07 62.9 7.1 74 287-363 374-464 (483)
348 2ce2_X GTPase HRAS; signaling 95.7 0.0051 1.7E-07 54.2 3.0 23 174-196 5-27 (166)
349 2v9p_A Replication protein E1; 95.7 0.00012 4.1E-09 74.6 -8.7 60 466-537 101-165 (305)
350 1kao_A RAP2A; GTP-binding prot 95.7 0.0058 2E-07 54.0 3.4 23 174-196 5-27 (167)
351 1u8z_A RAS-related protein RAL 95.7 0.0059 2E-07 54.0 3.3 23 174-196 6-28 (168)
352 1aky_A Adenylate kinase; ATP:A 95.6 0.0068 2.3E-07 57.6 3.9 24 171-194 3-26 (220)
353 1z0j_A RAB-22, RAS-related pro 95.6 0.0062 2.1E-07 54.2 3.4 23 174-196 8-30 (170)
354 1zd8_A GTP:AMP phosphotransfer 95.6 0.0059 2E-07 58.4 3.5 25 170-194 5-29 (227)
355 1z08_A RAS-related protein RAB 95.6 0.0062 2.1E-07 54.3 3.4 23 174-196 8-30 (170)
356 2pbr_A DTMP kinase, thymidylat 95.6 0.0062 2.1E-07 56.0 3.4 21 174-194 2-22 (195)
357 3cmu_A Protein RECA, recombina 95.6 0.042 1.4E-06 68.3 11.6 26 169-194 380-405 (2050)
358 2pt5_A Shikimate kinase, SK; a 95.6 0.0065 2.2E-07 54.8 3.5 21 174-194 2-22 (168)
359 3tw8_B RAS-related protein RAB 95.6 0.0055 1.9E-07 55.2 3.0 23 174-196 11-33 (181)
360 1e6c_A Shikimate kinase; phosp 95.6 0.0055 1.9E-07 55.5 2.9 22 173-194 3-24 (173)
361 3dl0_A Adenylate kinase; phosp 95.6 0.0063 2.2E-07 57.6 3.4 21 174-194 2-22 (216)
362 1ky3_A GTP-binding protein YPT 95.6 0.0065 2.2E-07 54.7 3.4 23 174-196 10-32 (182)
363 1ek0_A Protein (GTP-binding pr 95.6 0.0065 2.2E-07 54.0 3.3 23 174-196 5-27 (170)
364 1c1y_A RAS-related protein RAP 95.6 0.0065 2.2E-07 53.9 3.3 23 174-196 5-27 (167)
365 2lkc_A Translation initiation 95.6 0.0068 2.3E-07 54.6 3.5 25 171-195 7-31 (178)
366 1g16_A RAS-related protein SEC 95.5 0.0062 2.1E-07 54.2 3.0 23 174-196 5-27 (170)
367 4ag6_A VIRB4 ATPase, type IV s 95.5 0.0064 2.2E-07 63.4 3.6 45 309-353 261-311 (392)
368 1wms_A RAB-9, RAB9, RAS-relate 95.5 0.007 2.4E-07 54.5 3.4 22 174-195 9-30 (177)
369 1qf9_A UMP/CMP kinase, protein 95.5 0.0064 2.2E-07 55.8 3.1 23 172-194 6-28 (194)
370 2fn4_A P23, RAS-related protei 95.5 0.0065 2.2E-07 54.7 3.1 22 174-195 11-32 (181)
371 1svi_A GTP-binding protein YSX 95.5 0.0062 2.1E-07 55.9 3.0 23 173-195 24-46 (195)
372 4b4t_L 26S protease subunit RP 95.5 0.027 9.2E-07 60.0 8.3 28 168-195 211-238 (437)
373 3pqc_A Probable GTP-binding pr 95.5 0.0062 2.1E-07 55.6 3.0 23 174-196 25-47 (195)
374 3t1o_A Gliding protein MGLA; G 95.5 0.0073 2.5E-07 55.2 3.3 22 174-195 16-37 (198)
375 2cdn_A Adenylate kinase; phosp 95.5 0.0086 2.9E-07 56.0 3.8 24 171-194 19-42 (201)
376 4dsu_A GTPase KRAS, isoform 2B 95.5 0.0077 2.6E-07 54.7 3.4 23 174-196 6-28 (189)
377 2iyv_A Shikimate kinase, SK; t 95.4 0.0065 2.2E-07 55.8 2.9 22 173-194 3-24 (184)
378 1r2q_A RAS-related protein RAB 95.4 0.0078 2.7E-07 53.4 3.3 22 174-195 8-29 (170)
379 3llm_A ATP-dependent RNA helic 95.4 0.0084 2.9E-07 57.8 3.7 61 293-355 161-226 (235)
380 2cxx_A Probable GTP-binding pr 95.4 0.0068 2.3E-07 55.2 3.0 23 174-196 3-25 (190)
381 2oil_A CATX-8, RAS-related pro 95.4 0.0077 2.6E-07 55.4 3.3 23 174-196 27-49 (193)
382 1moz_A ARL1, ADP-ribosylation 95.4 0.0045 1.5E-07 56.2 1.7 23 172-194 18-40 (183)
383 3clv_A RAB5 protein, putative; 95.4 0.0078 2.7E-07 55.0 3.4 23 174-196 9-31 (208)
384 1ukz_A Uridylate kinase; trans 95.4 0.0079 2.7E-07 56.2 3.4 23 172-194 15-37 (203)
385 3bc1_A RAS-related protein RAB 95.4 0.0079 2.7E-07 54.7 3.3 23 174-196 13-35 (195)
386 2grj_A Dephospho-COA kinase; T 95.4 0.0081 2.8E-07 56.8 3.4 22 173-194 13-34 (192)
387 1zuh_A Shikimate kinase; alpha 95.4 0.009 3.1E-07 54.1 3.6 22 173-194 8-29 (168)
388 1upt_A ARL1, ADP-ribosylation 95.4 0.0082 2.8E-07 53.5 3.3 23 174-196 9-31 (171)
389 2hxs_A RAB-26, RAS-related pro 95.4 0.009 3.1E-07 53.8 3.6 22 174-195 8-29 (178)
390 1r8s_A ADP-ribosylation factor 95.4 0.0084 2.9E-07 53.2 3.3 22 174-195 2-23 (164)
391 2qmh_A HPR kinase/phosphorylas 95.4 0.013 4.5E-07 56.0 4.7 38 157-195 20-57 (205)
392 1zak_A Adenylate kinase; ATP:A 95.4 0.0072 2.5E-07 57.6 2.9 24 171-194 4-27 (222)
393 1uj2_A Uridine-cytidine kinase 95.3 0.0085 2.9E-07 58.5 3.4 22 173-194 23-44 (252)
394 3con_A GTPase NRAS; structural 95.3 0.009 3.1E-07 54.7 3.3 23 174-196 23-45 (190)
395 2a9k_A RAS-related protein RAL 95.3 0.0091 3.1E-07 54.0 3.3 23 174-196 20-42 (187)
396 3ihw_A Centg3; RAS, centaurin, 95.3 0.0092 3.2E-07 55.0 3.4 22 174-195 22-43 (184)
397 3bos_A Putative DNA replicatio 95.3 0.01 3.5E-07 56.1 3.8 24 171-194 51-74 (242)
398 1z0f_A RAB14, member RAS oncog 95.3 0.0093 3.2E-07 53.5 3.3 23 174-196 17-39 (179)
399 2y8e_A RAB-protein 6, GH09086P 95.3 0.0085 2.9E-07 53.8 3.0 22 174-195 16-37 (179)
400 1jal_A YCHF protein; nucleotid 95.3 0.0092 3.1E-07 62.1 3.6 24 172-195 2-25 (363)
401 2g6b_A RAS-related protein RAB 95.3 0.0095 3.3E-07 53.7 3.3 23 174-196 12-34 (180)
402 3a4m_A L-seryl-tRNA(SEC) kinas 95.3 0.0099 3.4E-07 58.4 3.7 24 171-194 3-26 (260)
403 2xb4_A Adenylate kinase; ATP-b 95.2 0.01 3.5E-07 56.8 3.5 21 174-194 2-22 (223)
404 2efe_B Small GTP-binding prote 95.2 0.011 3.7E-07 53.4 3.4 23 174-196 14-36 (181)
405 4b4t_K 26S protease regulatory 95.2 0.026 9E-07 60.0 6.8 28 168-195 202-229 (428)
406 3hu3_A Transitional endoplasmi 95.2 0.023 8E-07 61.4 6.5 27 169-195 235-261 (489)
407 1qvr_A CLPB protein; coiled co 95.2 0.021 7.3E-07 65.8 6.6 27 310-337 660-686 (854)
408 1wf3_A GTP-binding protein; GT 95.1 0.01 3.5E-07 59.9 3.5 24 174-197 9-32 (301)
409 1ko7_A HPR kinase/phosphatase; 95.1 0.015 5E-07 59.4 4.6 38 158-196 131-168 (314)
410 2bme_A RAB4A, RAS-related prot 95.1 0.01 3.4E-07 54.0 3.0 23 174-196 12-34 (186)
411 3iby_A Ferrous iron transport 95.1 0.0098 3.4E-07 58.6 3.2 22 174-195 3-24 (256)
412 2f6r_A COA synthase, bifunctio 95.1 0.0098 3.3E-07 59.4 3.2 22 173-194 76-97 (281)
413 2dby_A GTP-binding protein; GD 95.1 0.0093 3.2E-07 62.2 3.1 22 174-195 3-24 (368)
414 3cbq_A GTP-binding protein REM 95.1 0.0081 2.8E-07 56.0 2.4 21 174-194 25-45 (195)
415 1vg8_A RAS-related protein RAB 95.1 0.011 3.8E-07 54.7 3.4 23 174-196 10-32 (207)
416 4b4t_M 26S protease regulatory 95.1 0.027 9.3E-07 59.9 6.7 28 168-195 211-238 (434)
417 3kkq_A RAS-related protein M-R 95.1 0.011 3.9E-07 53.6 3.3 22 174-195 20-41 (183)
418 3tkl_A RAS-related protein RAB 95.1 0.011 3.8E-07 54.1 3.3 23 174-196 18-40 (196)
419 1m7b_A RND3/RHOE small GTP-bin 95.1 0.01 3.5E-07 54.2 3.0 23 174-196 9-31 (184)
420 2bov_A RAla, RAS-related prote 95.1 0.011 3.8E-07 54.6 3.3 23 174-196 16-38 (206)
421 2gf9_A RAS-related protein RAB 95.1 0.012 3.9E-07 54.1 3.3 23 174-196 24-46 (189)
422 1mh1_A RAC1; GTP-binding, GTPa 95.1 0.012 4E-07 53.3 3.3 22 174-195 7-28 (186)
423 2cjw_A GTP-binding protein GEM 95.1 0.011 3.9E-07 54.8 3.3 21 174-194 8-28 (192)
424 1nrj_B SR-beta, signal recogni 95.1 0.011 3.9E-07 55.4 3.3 23 174-196 14-36 (218)
425 2gf0_A GTP-binding protein DI- 95.0 0.011 3.8E-07 54.3 3.1 22 174-195 10-31 (199)
426 2xtp_A GTPase IMAP family memb 95.0 0.011 3.9E-07 57.5 3.2 23 174-196 24-46 (260)
427 2fg5_A RAB-22B, RAS-related pr 95.0 0.011 3.9E-07 54.4 3.1 23 174-196 25-47 (192)
428 1ksh_A ARF-like protein 2; sma 95.0 0.012 4.1E-07 53.7 3.1 26 171-196 17-42 (186)
429 3reg_A RHO-like small GTPase; 95.0 0.016 5.6E-07 53.3 4.1 23 174-196 25-47 (194)
430 3tlx_A Adenylate kinase 2; str 95.0 0.013 4.6E-07 56.9 3.7 24 171-194 28-51 (243)
431 1e4v_A Adenylate kinase; trans 95.0 0.012 4.1E-07 55.8 3.1 21 174-194 2-22 (214)
432 1zbd_A Rabphilin-3A; G protein 94.9 0.014 4.7E-07 54.1 3.5 23 174-196 10-32 (203)
433 3oes_A GTPase rhebl1; small GT 94.9 0.012 4.1E-07 54.7 3.0 23 174-196 26-48 (201)
434 3t5g_A GTP-binding protein RHE 94.9 0.012 4.2E-07 53.2 3.0 22 174-195 8-29 (181)
435 3dz8_A RAS-related protein RAB 94.9 0.012 4.2E-07 54.1 3.0 22 174-195 25-46 (191)
436 3a1s_A Iron(II) transport prot 94.9 0.014 4.6E-07 57.6 3.5 22 174-195 7-28 (258)
437 2w58_A DNAI, primosome compone 94.9 0.015 5.2E-07 54.2 3.7 23 173-195 55-77 (202)
438 2a5j_A RAS-related protein RAB 94.9 0.014 4.7E-07 53.7 3.3 23 174-196 23-45 (191)
439 1z06_A RAS-related protein RAB 94.9 0.014 4.8E-07 53.5 3.4 22 174-195 22-43 (189)
440 4dhe_A Probable GTP-binding pr 94.9 0.0075 2.6E-07 56.8 1.4 24 173-196 30-53 (223)
441 2iwr_A Centaurin gamma 1; ANK 94.9 0.012 4.1E-07 53.1 2.7 23 174-196 9-31 (178)
442 2il1_A RAB12; G-protein, GDP, 94.8 0.013 4.4E-07 54.1 3.0 22 174-195 28-49 (192)
443 3t5d_A Septin-7; GTP-binding p 94.8 0.011 3.9E-07 58.4 2.8 23 174-196 10-32 (274)
444 1zj6_A ADP-ribosylation factor 94.8 0.014 4.8E-07 53.4 3.2 22 174-195 18-39 (187)
445 3iev_A GTP-binding protein ERA 94.8 0.014 4.8E-07 59.0 3.5 23 174-196 12-34 (308)
446 4bas_A ADP-ribosylation factor 94.8 0.013 4.6E-07 53.7 3.1 23 174-196 19-41 (199)
447 2ew1_A RAS-related protein RAB 94.8 0.013 4.5E-07 55.0 3.0 23 174-196 28-50 (201)
448 2o52_A RAS-related protein RAB 94.8 0.014 4.8E-07 54.3 3.2 22 174-195 27-48 (200)
449 2h57_A ADP-ribosylation factor 94.8 0.01 3.6E-07 54.4 2.3 22 174-195 23-44 (190)
450 3i8s_A Ferrous iron transport 94.8 0.014 4.7E-07 58.0 3.2 22 174-195 5-26 (274)
451 1zd9_A ADP-ribosylation factor 94.8 0.015 5.2E-07 53.4 3.3 23 174-196 24-46 (188)
452 1a7j_A Phosphoribulokinase; tr 94.8 0.0078 2.7E-07 60.5 1.4 23 172-194 5-27 (290)
453 1x3s_A RAS-related protein RAB 94.8 0.016 5.3E-07 53.0 3.3 23 174-196 17-39 (195)
454 2atv_A RERG, RAS-like estrogen 94.8 0.016 5.4E-07 53.5 3.4 23 174-196 30-52 (196)
455 2h17_A ADP-ribosylation factor 94.7 0.013 4.5E-07 53.4 2.7 22 174-195 23-44 (181)
456 3be4_A Adenylate kinase; malar 94.7 0.015 5.2E-07 55.2 3.3 23 172-194 5-27 (217)
457 2p5s_A RAS and EF-hand domain 94.7 0.016 5.5E-07 53.7 3.3 23 173-195 29-51 (199)
458 1jbk_A CLPB protein; beta barr 94.7 0.019 6.5E-07 51.8 3.8 24 171-194 42-65 (195)
459 2wsm_A Hydrogenase expression/ 94.7 0.015 5E-07 54.9 3.1 22 174-195 32-53 (221)
460 2bcg_Y Protein YP2, GTP-bindin 94.7 0.015 5E-07 54.1 3.0 23 174-196 10-32 (206)
461 3cph_A RAS-related protein SEC 94.7 0.016 5.5E-07 53.9 3.3 24 173-196 21-44 (213)
462 2f7s_A C25KG, RAS-related prot 94.7 0.018 6E-07 54.1 3.6 22 174-195 27-48 (217)
463 2qu8_A Putative nucleolar GTP- 94.7 0.015 5.2E-07 55.3 3.1 22 174-195 31-52 (228)
464 3llu_A RAS-related GTP-binding 94.7 0.016 5.5E-07 53.7 3.2 22 174-195 22-43 (196)
465 3bwd_D RAC-like GTP-binding pr 94.7 0.02 6.8E-07 51.7 3.7 23 173-195 9-31 (182)
466 2orv_A Thymidine kinase; TP4A 94.7 0.1 3.5E-06 50.9 8.9 52 309-363 89-150 (234)
467 2q3h_A RAS homolog gene family 94.7 0.018 6.1E-07 53.2 3.5 23 173-195 21-43 (201)
468 4b4t_J 26S protease regulatory 94.7 0.057 2E-06 56.8 7.7 27 169-195 179-205 (405)
469 3c5c_A RAS-like protein 12; GD 94.6 0.018 6.1E-07 53.0 3.4 23 174-196 23-45 (187)
470 1jwy_B Dynamin A GTPase domain 94.6 0.016 5.4E-07 58.0 3.2 23 174-196 26-48 (315)
471 2fv8_A H6, RHO-related GTP-bin 94.6 0.016 5.6E-07 54.1 3.1 23 174-196 27-49 (207)
472 1gwn_A RHO-related GTP-binding 94.6 0.016 5.5E-07 54.5 3.0 23 174-196 30-52 (205)
473 1sky_E F1-ATPase, F1-ATP synth 94.6 0.021 7.3E-07 61.3 4.2 33 161-194 141-173 (473)
474 1ltq_A Polynucleotide kinase; 94.6 0.018 6.2E-07 57.2 3.5 22 173-194 3-24 (301)
475 2j1l_A RHO-related GTP-binding 94.6 0.018 6.1E-07 54.3 3.2 22 174-195 36-57 (214)
476 2fh5_B SR-beta, signal recogni 94.5 0.019 6.6E-07 53.7 3.3 23 174-196 9-31 (214)
477 2h92_A Cytidylate kinase; ross 94.5 0.018 6.2E-07 54.4 3.2 23 172-194 3-25 (219)
478 2fu5_C RAS-related protein RAB 94.5 0.013 4.3E-07 53.2 1.8 22 174-195 10-31 (183)
479 2gco_A H9, RHO-related GTP-bin 94.5 0.018 6.3E-07 53.5 3.0 23 174-196 27-49 (201)
480 1ak2_A Adenylate kinase isoenz 94.5 0.024 8.1E-07 54.5 3.9 24 171-194 15-38 (233)
481 3d3q_A TRNA delta(2)-isopenten 94.4 0.02 6.9E-07 59.0 3.4 21 174-194 9-29 (340)
482 3cmu_A Protein RECA, recombina 94.4 0.12 4.2E-06 64.2 10.8 27 168-194 1423-1449(2050)
483 4edh_A DTMP kinase, thymidylat 94.4 0.023 7.9E-07 54.5 3.6 25 170-194 4-28 (213)
484 2atx_A Small GTP binding prote 94.4 0.02 7E-07 52.5 3.1 22 174-195 20-41 (194)
485 1htw_A HI0065; nucleotide-bind 94.3 0.00055 1.9E-08 62.9 -7.6 65 470-536 11-86 (158)
486 2aka_B Dynamin-1; fusion prote 94.3 0.019 6.4E-07 56.9 3.0 24 174-197 28-51 (299)
487 2g3y_A GTP-binding protein GEM 94.3 0.024 8.2E-07 54.0 3.5 22 174-195 39-60 (211)
488 1njg_A DNA polymerase III subu 94.3 0.026 8.7E-07 52.8 3.7 42 309-351 125-168 (250)
489 3cnl_A YLQF, putative uncharac 94.3 0.021 7.1E-07 56.5 3.2 23 173-195 100-122 (262)
490 3def_A T7I23.11 protein; chlor 94.3 0.021 7.4E-07 56.0 3.2 23 174-196 38-60 (262)
491 3tqf_A HPR(Ser) kinase; transf 94.3 0.043 1.5E-06 51.3 5.0 35 160-195 5-39 (181)
492 2b6h_A ADP-ribosylation factor 94.3 0.019 6.5E-07 53.1 2.7 23 173-195 30-52 (192)
493 2p65_A Hypothetical protein PF 94.2 0.023 8E-07 51.2 3.2 23 172-194 43-65 (187)
494 3v9p_A DTMP kinase, thymidylat 94.2 0.019 6.4E-07 55.8 2.6 25 170-194 23-47 (227)
495 3lv8_A DTMP kinase, thymidylat 94.2 0.026 8.7E-07 55.2 3.5 24 171-194 26-49 (236)
496 2j9r_A Thymidine kinase; TK1, 94.2 0.066 2.2E-06 51.5 6.3 52 310-363 101-162 (214)
497 1h65_A Chloroplast outer envel 94.2 0.023 8E-07 55.9 3.2 23 174-196 41-63 (270)
498 4djt_A GTP-binding nuclear pro 94.1 0.011 3.9E-07 55.4 0.8 22 174-195 13-34 (218)
499 2ocp_A DGK, deoxyguanosine kin 94.1 0.026 8.9E-07 54.4 3.4 24 171-194 1-24 (241)
500 4b4t_H 26S protease regulatory 94.1 0.072 2.5E-06 57.0 7.0 28 168-195 239-266 (467)
No 1
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=2.5e-48 Score=448.20 Aligned_cols=297 Identities=31% Similarity=0.504 Sum_probs=228.8
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCC---CCCCCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDL---KVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~---~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
.|...|++++|+++.+|+|+||+|.+|+++||+||||||||||||+|+|..+ ..+....+.|..|+....
T Consensus 435 ~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~------- 507 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGT------- 507 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCC-------
T ss_pred eeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEccccccc-------
Confidence 4777799999999999999999999999999999999999999999996322 111223345555432110
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
....++.+++.. .... . ..++.++|+.+||.....++++.+|||||||||+
T Consensus 508 ---------------------~~~ltv~e~l~~------~~~~-~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRva 558 (986)
T 2iw3_A 508 ---------------------HSDTSVLDFVFE------SGVG-T-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLA 558 (986)
T ss_dssp ---------------------CTTSBHHHHHHT------TCSS-C-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHH
T ss_pred ---------------------ccCCcHHHHHHH------hhcC-H-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHH
Confidence 001112221110 0001 1 5678889999999756779999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHHHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYA 382 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~~~~ 382 (548)
|||||+.+|+||||||||||||+.++.+|.++|.+.++|||+||||++++..+||+|++|++|+++.|.|++++|.....
T Consensus 559 LArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~~~~ 638 (986)
T 2iw3_A 559 LARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCP 638 (986)
T ss_dssp HHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHHHCG
T ss_pred HHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHhhhH
Confidence 99999999999999999999999999999999998778999999999999999999999999999878899987642110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceeeeecCCCC--
Q psy11936 383 QKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFPDPP-- 460 (548)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f~~~~-- 460 (548)
. ... .. .... ....+.||.+.
T Consensus 639 ~------------------~~~--------------------------~~----~l~~---------~~~~~~~p~~~~~ 661 (986)
T 2iw3_A 639 A------------------AKA--------------------------YE----ELSN---------TDLEFKFPEPGYL 661 (986)
T ss_dssp G------------------GGG--------------------------SS----STTT---------CCCCCCCCCCCCC
T ss_pred H------------------HHH--------------------------HH----hhhh---------hhhhccccccccc
Confidence 0 000 00 0000 00112222221
Q ss_pred ----CCCCCcEEEEeeEEEeCC-CCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeeee
Q psy11936 461 ----PLQPPILGLHNVTFAYEG-MKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAYE 530 (548)
Q Consensus 461 ----~~~~~vL~l~~vs~~Y~~-~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y~ 530 (548)
..++++|+++||+|+|++ .+++|+|+||.. .|+.+.|.||| |||+|+|+|.++|++|+|+.+.|++|+|+
T Consensus 662 ~~~~~~~~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~~~I~yv 741 (986)
T 2iw3_A 662 EGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYI 741 (986)
T ss_dssp TTCCSTTSEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTTCCEEEE
T ss_pred cccccCCCceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCccceEee
Confidence 124678999999999975 367999999985 99999999997 89999999999999999999999999999
Q ss_pred eccce
Q psy11936 531 GMKPL 535 (548)
Q Consensus 531 ~~~~~ 535 (548)
+|++.
T Consensus 742 ~Q~~~ 746 (986)
T 2iw3_A 742 KQHAF 746 (986)
T ss_dssp CHHHH
T ss_pred ccchh
Confidence 99974
No 2
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=6.6e-44 Score=360.00 Aligned_cols=215 Identities=24% Similarity=0.312 Sum_probs=170.9
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.+|+++||+++|+++.+|+||||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++++...........
T Consensus 10 ~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl--~~p~~G~I~~~g~~~~~~~~~~~~~~- 86 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGY--LSPSHGECHLLGQNLNSWQPKALART- 86 (266)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSS--SCCSSCEEEETTEETTTSCHHHHHHH-
T ss_pred ceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCcEEEECCEECCcCCHHHHhhe-
Confidence 369999999999999999999999999999999999999999999999984 46889999999988754332211111
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
..++.+ .....+..++.+++... ...........++.++|+.+|+.. ..++++.+|||||||||+||
T Consensus 87 ------i~~v~q---~~~~~~~~tv~e~l~~~---~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~QRv~iA 153 (266)
T 4g1u_C 87 ------RAVMRQ---YSELAFPFSVSEVIQMG---RAPYGGSQDRQALQQVMAQTDCLA-LAQRDYRVLSGGEQQRVQLA 153 (266)
T ss_dssp ------EEEECS---CCCCCSCCBHHHHHHGG---GTTSCSTTHHHHHHHHHHHTTCST-TTTSBGGGCCHHHHHHHHHH
T ss_pred ------EEEEec---CCccCCCCCHHHHHHhh---hhhcCcHHHHHHHHHHHHHcCChh-HhcCCcccCCHHHHHHHHHH
Confidence 111111 01122344555554321 111123445678899999999974 67899999999999999999
Q ss_pred HHHcc------CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 305 RALYI------EPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 305 raL~~------~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
|||+. +|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|+++.. |+.
T Consensus 154 raL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~-g~~ 232 (266)
T 4g1u_C 154 RVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVAC-GTP 232 (266)
T ss_dssp HHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEE-ECH
T ss_pred HHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEE-cCH
Confidence 99999 99999999999999999999999988765 35999999999999999999999999999875 555
Q ss_pred HH
Q psy11936 375 SM 376 (548)
Q Consensus 375 ~~ 376 (548)
++
T Consensus 233 ~~ 234 (266)
T 4g1u_C 233 EE 234 (266)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 3
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=9.5e-44 Score=358.24 Aligned_cols=218 Identities=22% Similarity=0.285 Sum_probs=168.8
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+||||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.++++++. .........
T Consensus 24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl--~~p~~G~I~~~g~~i~-~~~~~~~~~-- 98 (263)
T 2olj_A 24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLL--EDFDEGEIIIDGINLK-AKDTNLNKV-- 98 (263)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS--SCCSEEEEEETTEESS-STTCCHHHH--
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcC--CCCCCcEEEECCEECC-CccccHHHH--
Confidence 59999999999988999999999999999999999999999999999985 4688999999998764 111000000
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCC--ChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD--SAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~--~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
.+..+++++. ...+...++.+++.... +...+.. ....++.++|+.+|+. ...++++.+|||||||||+|
T Consensus 99 --~~~i~~v~Q~---~~l~~~~tv~e~l~~~~--~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~l 170 (263)
T 2olj_A 99 --REEVGMVFQR---FNLFPHMTVLNNITLAP--MKVRKWPREKAEAKAMELLDKVGLK-DKAHAYPDSLSGGQAQRVAI 170 (263)
T ss_dssp --HHHEEEECSS---CCCCTTSCHHHHHHHHH--HHTSCCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHH
T ss_pred --hCcEEEEeCC---CcCCCCCCHHHHHHHHH--HHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCChhhCCHHHHHHHHH
Confidence 0011111111 11122346666653211 1111211 2345788999999997 46789999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+++
T Consensus 171 AraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~-g~~~~~ 246 (263)
T 2olj_A 171 ARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEE-GKPEDL 246 (263)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEE-ECHHHH
T ss_pred HHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE-CCHHHH
Confidence 99999999999999999999999999999988765 57999999999999999999999999999865 666554
No 4
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=4.9e-44 Score=362.51 Aligned_cols=218 Identities=22% Similarity=0.324 Sum_probs=169.1
Q ss_pred cEEEEeEEEEeCC-ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAKG-NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~-~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
+|+++||+++|++ ..+|+||||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++++...... ....
T Consensus 7 ~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl--~~p~~G~I~~~G~~i~~~~~~-~~~~- 82 (275)
T 3gfo_A 7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGI--LKPSSGRILFDNKPIDYSRKG-IMKL- 82 (275)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTS--SCCSEEEEEETTEECCCSHHH-HHHH-
T ss_pred EEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC--CCCCCeEEEECCEECCccccc-HHHH-
Confidence 5999999999975 4599999999999999999999999999999999984 468899999999887421111 1000
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC--CChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA--DSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~--~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
....+++++.. ....+..++.+++... ....+. .....++.++|+.+|+. ...++++.+|||||||||+
T Consensus 83 ---~~~ig~v~Q~~--~~~~~~~tv~e~l~~~---~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~ 153 (275)
T 3gfo_A 83 ---RESIGIVFQDP--DNQLFSASVYQDVSFG---AVNMKLPEDEIRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVA 153 (275)
T ss_dssp ---HHSEEEECSSG--GGTCCSSBHHHHHHHH---HHTSCCCHHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHH
T ss_pred ---hCcEEEEEcCc--ccccccCcHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCCcccCCHHHHHHHH
Confidence 01111222111 1122345666665432 112221 22356788999999997 4679999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+++
T Consensus 154 iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~-g~~~~~ 231 (275)
T 3gfo_A 154 IAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQ-GNPKEV 231 (275)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEE-ECHHHH
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE-CCHHHH
Confidence 999999999999999999999999999998888654 57999999999999999999999999999875 565543
No 5
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.1e-43 Score=349.59 Aligned_cols=214 Identities=21% Similarity=0.291 Sum_probs=164.9
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++++............
T Consensus 4 ~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~~~~- 80 (224)
T 2pcj_A 4 ILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLL--DAPTEGKVFLEGKEVDYTNEKELSLLR- 80 (224)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTS--SCCSEEEEEETTEECCSSCHHHHHHHH-
T ss_pred EEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEECCCCCHHHHHHHH-
Confidence 58999999999988999999999999999999999999999999999985 468899999999877433221110000
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
.....++++. .......++.+++.... .+..........++.++|+.+|+.+ ..++++.+|||||||||+|||
T Consensus 81 --~~~i~~v~q~---~~l~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~lar 153 (224)
T 2pcj_A 81 --NRKLGFVFQF---HYLIPELTALENVIVPM-LKMGKPKKEAKERGEYLLSELGLGD-KLSRKPYELSGGEQQRVAIAR 153 (224)
T ss_dssp --HHHEEEECSS---CCCCTTSCHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHTTCTT-CTTCCGGGSCHHHHHHHHHHH
T ss_pred --hCcEEEEecC---cccCCCCCHHHHHHhHH-HHcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHH
Confidence 0011111111 11122346666654321 1111111123457889999999974 578999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++ .+||+|++|++|+++..
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~ 220 (224)
T 2pcj_A 154 ALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVVGE 220 (224)
T ss_dssp HTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEEEE
T ss_pred HHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999988765 67999999999998 79999999999999864
No 6
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=6.3e-44 Score=353.80 Aligned_cols=215 Identities=23% Similarity=0.268 Sum_probs=163.8
Q ss_pred cEEEEeEEEEeCC----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 146 DIKVENFSISAKG----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~~----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
+|+++||+++|++ ..+|+||||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+++.++...+.....
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl--~~p~~G~I~~~g~~~~~~~~~~~~ 78 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL--DKPTEGEVYIDNIKTNDLDDDELT 78 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS--SCCSEEEEEETTEECTTCCHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCceEEEECCEEcccCCHHHHH
Confidence 4789999999963 4699999999999999999999999999999999984 578899999999887543322211
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC---CChHHHHHHHHHhCCCChhhhhcccCCCCHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA---DSAEPRARRILAGLGFSRAMQDRATKNFSGGWR 298 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~---~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqk 298 (548)
.... ...+++++. .......++.+++..... +...+. .....++.++|+.+|+.+...++++.+||||||
T Consensus 79 ~~~~---~~i~~v~Q~---~~l~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~ 151 (235)
T 3tif_A 79 KIRR---DKIGFVFQQ---FNLIPLLTALENVELPLI-FKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQ 151 (235)
T ss_dssp HHHH---HHEEEECTT---CCCCTTSCHHHHHHHHHH-TCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHH
T ss_pred HHhh---ccEEEEecC---CccCCCCcHHHHHHHHHH-hhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHH
Confidence 1000 011111111 112233466666542111 000011 123456788999999986445899999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|||+|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++.+ .+||+|++|++|+++..
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~~ 226 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVERE 226 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999988764 68999999999965 78999999999999865
No 7
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=9.5e-44 Score=358.06 Aligned_cols=219 Identities=27% Similarity=0.376 Sum_probs=169.2
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeecc----------C
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVA----------D 215 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~----------~ 215 (548)
+|+++||+++|+++.+|+||||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.++++++.. .
T Consensus 6 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFL--EKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS--SCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred eEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCEEcccccccccccccc
Confidence 59999999999988999999999999999999999999999999999985 46789999999987641 1
Q ss_pred chhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCC--ChHHHHHHHHHhCCCChhh-hhcccCC
Q psy11936 216 DLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD--SAEPRARRILAGLGFSRAM-QDRATKN 292 (548)
Q Consensus 216 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~--~~~~~~~~~L~~lgl~~~~-~~~~~~~ 292 (548)
........ ....+++++. .......++.+++.... +...+.. ....++.++|+.+|+.. . .++++.+
T Consensus 84 ~~~~~~~~----~~~i~~v~Q~---~~l~~~ltv~e~l~~~~--~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~~ 153 (262)
T 1b0u_A 84 DKNQLRLL----RTRLTMVFQH---FNLWSHMTVLENVMEAP--IQVLGLSKHDARERALKYLAKVGIDE-RAQGKYPVH 153 (262)
T ss_dssp CHHHHHHH----HHHEEEECSS---CCCCTTSCHHHHHHHHH--HHTTCCCHHHHHHHHHHHHHHTTCCH-HHHTSCGGG
T ss_pred ChhhHHHH----hcceEEEecC---cccCCCCcHHHHHHhhH--HHhcCCCHHHHHHHHHHHHHHcCCCc-hhhcCCccc
Confidence 11110000 0111111111 11223346666654311 1111211 23457889999999984 5 7999999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
|||||||||+|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++.
T Consensus 154 LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 233 (262)
T 1b0u_A 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 233 (262)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999988765 6799999999999999999999999999986
Q ss_pred EcCCHHHH
Q psy11936 370 YKGNYSMF 377 (548)
Q Consensus 370 ~~g~y~~f 377 (548)
. |+.+++
T Consensus 234 ~-g~~~~~ 240 (262)
T 1b0u_A 234 E-GDPEQV 240 (262)
T ss_dssp E-ECHHHH
T ss_pred e-CCHHHH
Confidence 5 665554
No 8
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=8.8e-44 Score=372.59 Aligned_cols=220 Identities=23% Similarity=0.328 Sum_probs=172.3
Q ss_pred ccEEEEeEEEEeCC----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHH
Q psy11936 145 VDIKVENFSISAKG----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAV 220 (548)
Q Consensus 145 ~~I~l~nls~~y~~----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~ 220 (548)
.+|+++||+++|++ ..+|+||||+|.+|+++||+||||||||||||+|+|. ..|.+|+|.++++++...+...+
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL--~~p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL--ERPTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS--SCCSEEEEEETTEECSSCCHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcC--CCCCceEEEECCEECCcCCHHHH
Confidence 36999999999964 3699999999999999999999999999999999984 57889999999998865433221
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqR 300 (548)
... .+..+++++. ...++..++.+++..... +..........++.++|+.+||.. ..++++.+||||||||
T Consensus 101 ~~~----r~~Ig~v~Q~---~~l~~~~TV~env~~~~~-~~~~~~~~~~~~v~~lL~~vgL~~-~~~~~~~~LSGGqkQR 171 (366)
T 3tui_C 101 TKA----RRQIGMIFQH---FNLLSSRTVFGNVALPLE-LDNTPKDEVKRRVTELLSLVGLGD-KHDSYPSNLSGGQKQR 171 (366)
T ss_dssp HHH----HTTEEEECSS---CCCCTTSCHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHTCGG-GTTCCTTTSCHHHHHH
T ss_pred HHH----hCcEEEEeCC---CccCCCCCHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCch-HhcCChhhCCHHHHHH
Confidence 111 0111222221 122334567776643221 111112234567889999999974 6799999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
|+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|+++.. |+.++
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~-g~~~e 250 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ-DTVSE 250 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEC-CBHHH
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE-cCHHH
Confidence 99999999999999999999999999999999888764 67999999999999999999999999999975 55444
No 9
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.3e-43 Score=373.33 Aligned_cols=214 Identities=24% Similarity=0.319 Sum_probs=171.4
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
.|+++||+++|++..+|+||||+|.+|++++|+||||||||||||+|+|. ..|.+|+|.+.++++.......
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl--~~p~~G~I~i~G~~~~~~~~~~------ 74 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL--ETITSGDLFIGEKRMNDTPPAE------ 74 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS--SCCSEEEEEETTEECTTCCGGG------
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcC--CCCCCeEEEECCEECCCCCHHH------
Confidence 58999999999999999999999999999999999999999999999985 4788999999998875332110
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
+..++++|. ...++.+++.+++..... +..........++.++|+.+|+. ...++++.+|||||||||+|||
T Consensus 75 ---r~ig~VfQ~---~~l~p~ltV~eni~~~~~-~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~p~~LSGGqrQRVaiAr 146 (381)
T 3rlf_A 75 ---RGVGMVFQS---YALYPHLSVAENMSFGLK-LAGAKKEVINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAIGR 146 (381)
T ss_dssp ---SCEEEECTT---CCCCTTSCHHHHHTHHHH-HTTCCHHHHHHHHHHHHHHTTCG-GGTTCCGGGSCHHHHHHHHHHH
T ss_pred ---CCEEEEecC---CcCCCCCCHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhHCCHHHHHHHHHHH
Confidence 011122211 122335577776643221 11122223456789999999997 4679999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~ 375 (548)
||+.+|+||||||||++||+..+..+.++|+++ +.|+|+||||++++..+||+|++|++|+++..+.+.+
T Consensus 147 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~ 220 (381)
T 3rlf_A 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLE 220 (381)
T ss_dssp HHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 999999999999999999999998888877654 6899999999999999999999999999998754433
No 10
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=5.1e-43 Score=351.60 Aligned_cols=217 Identities=24% Similarity=0.325 Sum_probs=169.2
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.+|+++||+++|+++.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.++++++.. ....+.
T Consensus 14 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl--~~p~~G~I~~~g~~~~~-~~~~~~--- 87 (256)
T 1vpl_A 14 GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL--IKPSSGIVTVFGKNVVE-EPHEVR--- 87 (256)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS--SCCSEEEEEETTEETTT-CHHHHH---
T ss_pred CeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEECCc-cHHHHh---
Confidence 469999999999988999999999999999999999999999999999985 46889999999887642 111100
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
...+++++. .......++.+++.... .+..........++.++|+.+|+.. ..++++.+|||||||||+||
T Consensus 88 ----~~i~~v~q~---~~l~~~ltv~enl~~~~-~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 88 ----KLISYLPEE---AGAYRNMQGIEYLRFVA-GFYASSSSEIEEMVERATEIAGLGE-KIKDRVSTYSKGMVRKLLIA 158 (256)
T ss_dssp ----TTEEEECTT---CCCCTTSBHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHCCGG-GGGSBGGGCCHHHHHHHHHH
T ss_pred ----hcEEEEcCC---CCCCCCCcHHHHHHHHH-HHcCCChHHHHHHHHHHHHHCCCch-HhcCChhhCCHHHHHHHHHH
Confidence 011111111 11122346666654321 1111111112356888999999974 67899999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+++
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~-g~~~~~ 233 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVET-GTVEEL 233 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEE-EEHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEe-cCHHHH
Confidence 9999999999999999999999999999988765 57999999999999999999999999999864 665554
No 11
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=5.1e-44 Score=373.96 Aligned_cols=214 Identities=23% Similarity=0.271 Sum_probs=166.6
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc--hhHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD--LTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~--~~~~~~~ 223 (548)
+|+++||+++|++..+|+||||+|.+|++++|+||||||||||||+|+|. ..|.+|+|.+.++++.... ....
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl--~~p~~G~I~i~G~~i~~~~~~~~~~--- 78 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGF--EQPDSGEISLSGKTIFSKNTNLPVR--- 78 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTS--SCCSEEEEEETTEEEESSSCBCCGG---
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcC--CCCCCcEEEECCEECcccccccchh---
Confidence 58999999999999999999999999999999999999999999999985 5788999999998873211 1000
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
.+..+++++. ...++..++.+++..... ...........++.++|+.+|+. ...++++.+|||||||||+|
T Consensus 79 ----~r~ig~vfQ~---~~l~p~ltV~eni~~~l~-~~~~~~~~~~~~v~~~l~~~gL~-~~~~r~~~~LSGGq~QRVal 149 (359)
T 3fvq_A 79 ----ERRLGYLVQE---GVLFPHLTVYRNIAYGLG-NGKGRTAQERQRIEAMLELTGIS-ELAGRYPHELSGGQQQRAAL 149 (359)
T ss_dssp ----GSCCEEECTT---CCCCTTSCHHHHHHTTST-TSSCCSHHHHHHHHHHHHHHTCG-GGTTSCGGGSCHHHHHHHHH
T ss_pred ----hCCEEEEeCC---CcCCCCCCHHHHHHHHHH-HcCCChHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHH
Confidence 0111122211 122334566665532110 00111122456788999999997 46899999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh----hcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCC
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQ----GWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~----~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~ 373 (548)
||||+.+|+||||||||++||+..+..+.+.|. +.+.|||+||||++++..+||||++|++|+++..+.+
T Consensus 150 ArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~ 223 (359)
T 3fvq_A 150 ARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASP 223 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCH
Confidence 999999999999999999999998887776443 4578999999999999999999999999999976433
No 12
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.8e-43 Score=354.99 Aligned_cols=217 Identities=18% Similarity=0.181 Sum_probs=166.2
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+||||+|.+|+++||+||||||||||||+|+|. ..|.+|+|.++++++........ ..
T Consensus 7 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~---~~ 81 (257)
T 1g6h_A 7 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF--LKADEGRVYFENKDITNKEPAEL---YH 81 (257)
T ss_dssp EEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTS--SCCSEEEEEETTEECTTCCHHHH---HH
T ss_pred EEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEECCCCCHHHH---Hh
Confidence 59999999999998999999999999999999999999999999999985 46789999999987643221100 00
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcC-----------CC--ChHHHHHHHHHhCCCChhhhhcccCC
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG-----------AD--SAEPRARRILAGLGFSRAMQDRATKN 292 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-----------~~--~~~~~~~~~L~~lgl~~~~~~~~~~~ 292 (548)
...+++++.. ......++.+++..... ....+ .. ....++.++|+.+|+. ...++++.+
T Consensus 82 ---~~i~~v~q~~---~l~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~ 153 (257)
T 1g6h_A 82 ---YGIVRTFQTP---QPLKEMTVLENLLIGEI-CPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS-HLYDRKAGE 153 (257)
T ss_dssp ---HTEEECCCCC---GGGGGSBHHHHHHGGGT-STTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGG
T ss_pred ---CCEEEEccCC---ccCCCCcHHHHHHHHHh-hhccCcccccccccccCCHHHHHHHHHHHHHHcCCc-hhhCCCchh
Confidence 0011111110 11122345554422100 00001 11 1245788999999997 467899999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
|||||||||+|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++.
T Consensus 154 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 233 (257)
T 1g6h_A 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA 233 (257)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998765 6799999999999999999999999999986
Q ss_pred EcCCHHH
Q psy11936 370 YKGNYSM 376 (548)
Q Consensus 370 ~~g~y~~ 376 (548)
. |+.++
T Consensus 234 ~-g~~~~ 239 (257)
T 1g6h_A 234 E-GRGEE 239 (257)
T ss_dssp E-EESHH
T ss_pred E-eCHHH
Confidence 5 44444
No 13
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=7.8e-43 Score=346.92 Aligned_cols=217 Identities=20% Similarity=0.206 Sum_probs=166.7
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+||||||||||||+|+|. ..|.+|+|.+++.++......... .
T Consensus 6 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~---~ 80 (240)
T 1ji0_A 6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL--VRAQKGKIIFNGQDITNKPAHVIN---R 80 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS--SCCSEEEEEETTEECTTCCHHHHH---H
T ss_pred eEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEECCCCCHHHHH---h
Confidence 59999999999988899999999999999999999999999999999984 468899999999876432211100 0
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCC-CChhhhhcccCCCCHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLG-FSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lg-l~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
....++++. .......++.+++.... ...........++.++++.++ +. ...++++.+|||||||||+||
T Consensus 81 ---~~i~~v~q~---~~l~~~ltv~enl~~~~--~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LSgGq~qrv~lA 151 (240)
T 1ji0_A 81 ---MGIALVPEG---RRIFPELTVYENLMMGA--YNRKDKEGIKRDLEWIFSLFPRLK-ERLKQLGGTLSGGEQQMLAIG 151 (240)
T ss_dssp ---TTEEEECSS---CCCCTTSBHHHHHHGGG--TTCCCSSHHHHHHHHHHHHCHHHH-TTTTSBSSSSCHHHHHHHHHH
T ss_pred ---CCEEEEecC---CccCCCCcHHHHHHHhh--hcCCCHHHHHHHHHHHHHHcccHh-hHhcCChhhCCHHHHHHHHHH
Confidence 001111111 11122345665553210 000111223456788999994 85 356889999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+++
T Consensus 152 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~-g~~~~~ 226 (240)
T 1ji0_A 152 RALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLE-GKASEL 226 (240)
T ss_dssp HHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE-EEHHHH
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE-cCHHHH
Confidence 9999999999999999999999999999988765 57999999999999999999999999999864 555543
No 14
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=7.9e-43 Score=364.90 Aligned_cols=216 Identities=25% Similarity=0.318 Sum_probs=170.8
Q ss_pred cccEEEEeEEEEe-CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 144 AVDIKVENFSISA-KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 144 ~~~I~l~nls~~y-~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
+.+|+++||+++| ++..+|+|+||+|.+|++++|+||||||||||||+|+|. ..|.+|+|.++++++......
T Consensus 12 ~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--~~p~~G~I~i~g~~i~~~~~~---- 85 (355)
T 1z47_A 12 SMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGL--ERPTKGDVWIGGKRVTDLPPQ---- 85 (355)
T ss_dssp CEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS--SCCSEEEEEETTEECTTCCGG----
T ss_pred CceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCC--CCCCccEEEECCEECCcCChh----
Confidence 4579999999999 888899999999999999999999999999999999985 478899999999876432110
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
.+..+++++. ...+...++.+++..... +..........++.++|+.+|+. ...++++.+|||||||||+
T Consensus 86 -----~r~ig~v~Q~---~~l~~~ltv~eni~~~l~-~~~~~~~~~~~~v~~~l~~~gL~-~~~~r~~~~LSGGq~QRva 155 (355)
T 1z47_A 86 -----KRNVGLVFQN---YALFQHMTVYDNVSFGLR-EKRVPKDEMDARVRELLRFMRLE-SYANRFPHELSGGQQQRVA 155 (355)
T ss_dssp -----GSSEEEECGG---GCCCTTSCHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHH
T ss_pred -----hCcEEEEecC---cccCCCCCHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCCh-hHhcCCcccCCHHHHHHHH
Confidence 0111122211 122334567776643211 11111122356788999999997 4679999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|+++.. |+.++
T Consensus 156 lArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~-g~~~~ 232 (355)
T 1z47_A 156 LARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQF-GTPEE 232 (355)
T ss_dssp HHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEE-ECHHH
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE-cCHHH
Confidence 999999999999999999999999999888887654 68999999999999999999999999999875 55443
No 15
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=9.9e-43 Score=353.69 Aligned_cols=221 Identities=22% Similarity=0.219 Sum_probs=167.4
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeec--cCchhHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVV--ADDLTAVES 222 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~--~~~~~~~~~ 222 (548)
++|+++||+++|+++.+|+||||+|.+|+++||+||||||||||||+|+|. ..|.+|+|.+.+.++. ......+.
T Consensus 20 ~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl--~~p~~G~I~~~g~~~~~~~~~~~~~~- 96 (279)
T 2ihy_A 20 MLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAY--EPATSGTVNLFGKMPGKVGYSAETVR- 96 (279)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS--SCCSEEEEEETTBCCC---CCHHHHH-
T ss_pred ceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCCeEEEECCEEcccccCCHHHHc-
Confidence 369999999999988999999999999999999999999999999999985 4688999999988764 21111111
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHH---HHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEE---LKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRM 299 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~---l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkq 299 (548)
...+++++..... .....++.+++...... +..........++.++|+.+|+. ...++++.+|||||||
T Consensus 97 ------~~i~~v~Q~~~~~-~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqkq 168 (279)
T 2ihy_A 97 ------QHIGFVSHSLLEK-FQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMS-AKAQQYIGYLSTGEKQ 168 (279)
T ss_dssp ------TTEEEECHHHHTT-SCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHH
T ss_pred ------CcEEEEEcCcccc-cCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHH
Confidence 1112222221110 01123555555321000 00001112245688999999996 4678999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeE--EEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 300 RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTL--LIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 300 RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~Tv--IiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
||+|||||+.+|+||||||||++||+.++..+.++|.++ +.|| |+||||++++..+||+|++|++|+++.. |+.
T Consensus 169 Rv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~-g~~ 247 (279)
T 2ihy_A 169 RVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQ-GAV 247 (279)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEE-EEH
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEE-CCH
Confidence 999999999999999999999999999999999998765 5799 9999999999999999999999999864 665
Q ss_pred HHH
Q psy11936 375 SMF 377 (548)
Q Consensus 375 ~~f 377 (548)
+++
T Consensus 248 ~~~ 250 (279)
T 2ihy_A 248 EDI 250 (279)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 16
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.5e-42 Score=346.99 Aligned_cols=220 Identities=20% Similarity=0.260 Sum_probs=163.1
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|.....|.+|+|.++++++..........
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~--- 79 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERAR--- 79 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHH---
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHh---
Confidence 58999999999988999999999999999999999999999999999985224578899999998764322111100
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC--CChHHHHHHHHHhCCCChhhhhcccCC-CCHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA--DSAEPRARRILAGLGFSRAMQDRATKN-FSGGWRMRVS 302 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~--~~~~~~~~~~L~~lgl~~~~~~~~~~~-LSGGqkqRva 302 (548)
....++++. .......++.+++............ .....++.++|+.+|+.....++++.+ |||||||||+
T Consensus 80 ---~~i~~v~q~---~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~ 153 (250)
T 2d2e_A 80 ---KGLFLAFQY---PVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNE 153 (250)
T ss_dssp ---TTBCCCCCC---CC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHH
T ss_pred ---CcEEEeccC---CccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHH
Confidence 000111110 0112234555555332211111111 122456788999999964567899999 9999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhh-cCEEEEEeCCEEEEEcCCHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNV-CNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~v-adrIi~L~~G~i~~~~g~y~ 375 (548)
|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+ ||+|++|++|+++.. |+.+
T Consensus 154 iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~-g~~~ 229 (250)
T 2d2e_A 154 ILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVAT-GGPE 229 (250)
T ss_dssp HHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEE-ESHH
T ss_pred HHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEE-eCHH
Confidence 999999999999999999999999999999999875 47999999999999888 599999999999865 5554
No 17
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=4.5e-43 Score=386.28 Aligned_cols=316 Identities=20% Similarity=0.220 Sum_probs=205.9
Q ss_pred EeEEEEeCCc-eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee--ccCchhHHHHHHHh
Q psy11936 150 ENFSISAKGN-DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV--VADDLTAVESVLKA 226 (548)
Q Consensus 150 ~nls~~y~~~-~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i--~~~~~~~~~~~~~~ 226 (548)
+||+++|++. .+|.++| +|.+|+++||+||||||||||||+|+|. ..|.+|.+......+ ...+ ..+......
T Consensus 25 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl--~~p~~G~~~~~~~~~~~~~~g-~~~~~~~~~ 100 (538)
T 1yqt_A 25 EDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQ--LIPNLCGDNDSWDGVIRAFRG-NELQNYFEK 100 (538)
T ss_dssp CCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTS--SCCCTTTTCCSHHHHHHHTTT-STHHHHHHH
T ss_pred cCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCccCcchhhhHHhhCC-ccHHHHHHH
Confidence 4899999886 4899999 9999999999999999999999999985 345555421000000 0000 000000000
Q ss_pred hH-H--HHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 227 DV-K--RTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 227 ~~-~--~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
.. . ...+..+...........++.+++. .. ....++.++|+.+||.. ..++++.+|||||||||+|
T Consensus 101 ~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~-------~~---~~~~~~~~~l~~lgl~~-~~~~~~~~LSgGekQRv~i 169 (538)
T 1yqt_A 101 LKNGEIRPVVKPQYVDLIPKAVKGKVIELLK-------KA---DETGKLEEVVKALELEN-VLEREIQHLSGGELQRVAI 169 (538)
T ss_dssp HHTTSCCCEEECSCGGGSGGGCCSBHHHHHH-------HH---CSSSCHHHHHHHTTCTT-TTTSBGGGCCHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhhhhcchhhhccHHHHHh-------hh---hHHHHHHHHHHHcCCCh-hhhCChhhCCHHHHHHHHH
Confidence 00 0 0000000000000000012222211 11 11245788999999974 6799999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEE--EEEcCCHHHHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKL--YYYKGNYSMFK 378 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i--~~~~g~y~~f~ 378 (548)
||||+.+|+||||||||||||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|.. ..+..+++.-.
T Consensus 170 AraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~~~~~~~~~~~~~~~~ 249 (538)
T 1yqt_A 170 AAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQPKGTRN 249 (538)
T ss_dssp HHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCcccccccccchhhHHH
Confidence 99999999999999999999999999999888765 78999999999999999999999985421 12223332100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceeeeecCC
Q psy11936 379 KMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFPD 458 (548)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f~~ 458 (548)
.+....... ........ + .....+.++.
T Consensus 250 -------------------~~~~~~~~~------------------------~~~~~~~~-~--------~~~~~~~~~~ 277 (538)
T 1yqt_A 250 -------------------GINEFLRGY------------------------LKDENVRF-R--------PYEIKFTKTG 277 (538)
T ss_dssp -------------------HHHHHHHTE------------------------ETTTTEEC-S--------SSCCCCCCSS
T ss_pred -------------------HHHHHhhhc------------------------cchhhhcc-c--------ccccccccCC
Confidence 000000000 00000000 0 0011122222
Q ss_pred CC--CCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeeeee
Q psy11936 459 PP--PLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAYEG 531 (548)
Q Consensus 459 ~~--~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y~~ 531 (548)
+. ..+.++|++++++++|++ ..|++++|.. .|+.+.|.||| |||+|+|+|.++|++|+|+. +.+|+|+.
T Consensus 278 ~~~~~~~~~~l~~~~l~~~~~~--~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~--~~~i~~v~ 353 (538)
T 1yqt_A 278 ERVEIERETLVTYPRLVKDYGS--FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW--DLTVAYKP 353 (538)
T ss_dssp GGGSSCCCEEEEECCEEEEETT--EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC--CCCEEEEC
T ss_pred cccccCCCeEEEEeeEEEEECC--EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE--CceEEEEe
Confidence 11 135679999999999964 4688888874 89999999997 89999999999999999986 67899999
Q ss_pred cccee
Q psy11936 532 MKPLL 536 (548)
Q Consensus 532 ~~~~~ 536 (548)
|++.+
T Consensus 354 Q~~~~ 358 (538)
T 1yqt_A 354 QYIKA 358 (538)
T ss_dssp SSCCC
T ss_pred cCCcC
Confidence 99854
No 18
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=3.2e-42 Score=347.83 Aligned_cols=221 Identities=20% Similarity=0.301 Sum_probs=166.3
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+||||||||||||+|+|.....|.+|+|.++++++..........
T Consensus 20 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~--- 96 (267)
T 2zu0_C 20 MLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG--- 96 (267)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH---
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh---
Confidence 69999999999988999999999999999999999999999999999985223477899999998764322111100
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHh-cCC-----CChHHHHHHHHHhCCCChhhhhcccC-CCCHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA-IGA-----DSAEPRARRILAGLGFSRAMQDRATK-NFSGGWR 298 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~-----~~~~~~~~~~L~~lgl~~~~~~~~~~-~LSGGqk 298 (548)
....++++. .......++.+++......+.. .+. .....++.++|+.+|+.....++++. +||||||
T Consensus 97 ---~~i~~v~Q~---~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~ 170 (267)
T 2zu0_C 97 ---EGIFMAFQY---PVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEK 170 (267)
T ss_dssp ---HTEEEECSS---CCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHH
T ss_pred ---CCEEEEccC---ccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHH
Confidence 000011110 0111233455554332211211 111 11235688999999997445688887 5999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhh-cCEEEEEeCCEEEEEcCCH
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNV-CNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~v-adrIi~L~~G~i~~~~g~y 374 (548)
|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+ ||+|++|++|+++.. |+.
T Consensus 171 QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~-g~~ 249 (267)
T 2zu0_C 171 KRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS-GDF 249 (267)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEE-ECT
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEE-cCH
Confidence 9999999999999999999999999999999999999876 47999999999999886 999999999999865 554
Q ss_pred HH
Q psy11936 375 SM 376 (548)
Q Consensus 375 ~~ 376 (548)
+.
T Consensus 250 ~~ 251 (267)
T 2zu0_C 250 TL 251 (267)
T ss_dssp TH
T ss_pred HH
Confidence 43
No 19
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.3e-42 Score=364.25 Aligned_cols=214 Identities=27% Similarity=0.327 Sum_probs=169.5
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|++..+|+|+||+|.+|++++|+||||||||||||+|+|. ..|.+|+|.++++++.......
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--~~p~~G~I~i~g~~i~~~~~~~------ 74 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGI--YKPTSGKIYFDEKDVTELPPKD------ 74 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS--SCCSEEEEEETTEECTTSCGGG------
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC--CCCCceEEEECCEECCcCCHhH------
Confidence 48999999999988999999999999999999999999999999999985 4688999999998774322110
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
+..+++++. ...+...++.+++..... +..........++.++|+.+|+.+ ..++++.+|||||||||+|||
T Consensus 75 ---r~ig~v~Q~---~~l~~~ltv~eni~~~~~-~~~~~~~~~~~~v~~~l~~~~L~~-~~~r~~~~LSGGq~QRvalAr 146 (362)
T 2it1_A 75 ---RNVGLVFQN---WALYPHMTVYKNIAFPLE-LRKAPREEIDKKVREVAKMLHIDK-LLNRYPWQLSGGQQQRVAIAR 146 (362)
T ss_dssp ---TTEEEECTT---CCCCTTSCHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHTTCTT-CTTCCGGGSCHHHHHHHHHHH
T ss_pred ---CcEEEEecC---cccCCCCCHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCch-HhhCChhhCCHHHHHHHHHHH
Confidence 111122111 112234567776643211 111111223467889999999974 679999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
||+.+|+||||||||++||+.++..+.++|+++ +.|+|+||||++++..+||+|++|++|+++.. |+.++
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~-g~~~~ 220 (362)
T 2it1_A 147 ALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQV-GTPDE 220 (362)
T ss_dssp HHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE-ECHHH
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE-cCHHH
Confidence 999999999999999999999999888888654 68999999999999999999999999999876 44443
No 20
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=2.2e-42 Score=348.79 Aligned_cols=215 Identities=25% Similarity=0.353 Sum_probs=167.2
Q ss_pred cEEEEeEEEEeC--C---ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHH
Q psy11936 146 DIKVENFSISAK--G---NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~--~---~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~ 220 (548)
+|+++||+++|+ + +.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+++.++... .+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl--~~p~~G~I~~~g~~~~~~---~~ 76 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL--IEPTSGDVLYDGERKKGY---EI 76 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS--SCCSEEEEEETTEECCHH---HH
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCCcEEEECCEECchH---Hh
Confidence 589999999997 4 5799999999999999999999999999999999985 468899999988765310 00
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh-hhhhcccCCCCHHHHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR-AMQDRATKNFSGGWRM 299 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~-~~~~~~~~~LSGGqkq 299 (548)
....+++++.. ....+..++.+++...... . ........++.++|+.+|+.. ...++++.+|||||||
T Consensus 77 -------~~~i~~v~q~~--~~~~~~~tv~enl~~~~~~-~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~q 145 (266)
T 2yz2_A 77 -------RRNIGIAFQYP--EDQFFAERVFDEVAFAVKN-F-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKR 145 (266)
T ss_dssp -------GGGEEEECSSG--GGGCCCSSHHHHHHHTTTT-T-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHH
T ss_pred -------hhhEEEEeccc--hhhcCCCcHHHHHHHHHHh-c-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHH
Confidence 01111222110 0122345666655321100 0 122334677899999999972 3578999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 300 RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 300 RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
||+|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+.
T Consensus 146 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~-g~~~~ 224 (266)
T 2yz2_A 146 RVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFD-GTRME 224 (266)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEE-EEHHH
T ss_pred HHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHHH
Confidence 999999999999999999999999999999999988765 57999999999999999999999999999864 55544
Q ss_pred H
Q psy11936 377 F 377 (548)
Q Consensus 377 f 377 (548)
+
T Consensus 225 ~ 225 (266)
T 2yz2_A 225 F 225 (266)
T ss_dssp H
T ss_pred H
Confidence 3
No 21
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=7e-43 Score=389.21 Aligned_cols=316 Identities=20% Similarity=0.231 Sum_probs=206.7
Q ss_pred EeEEEEeCCc-eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee--ccCchhHHHHHHHh
Q psy11936 150 ENFSISAKGN-DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV--VADDLTAVESVLKA 226 (548)
Q Consensus 150 ~nls~~y~~~-~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i--~~~~~~~~~~~~~~ 226 (548)
+||+++|++. .+|.++| +|.+|+++||+|||||||||||++|+|. ..|..|.+......+ ...+ ..+......
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gl--l~p~~G~~~~~~~~~~~~~~G-~~~~~~~~~ 170 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQ--LIPNLCEDNDSWDNVIRAFRG-NELQNYFER 170 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTS--SCCCTTTTCCCHHHHHHHTTT-STHHHHHHH
T ss_pred CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCC--CCCCCCccccccchhhheeCC-Eehhhhhhh
Confidence 8999999887 4899999 9999999999999999999999999985 345555521000000 0000 000000000
Q ss_pred hHH-H--HHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 227 DVK-R--TELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 227 ~~~-~--~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
... . ..+..+........+..++.+++ .. .....++.++|+.+||.. ..++++.+|||||||||+|
T Consensus 171 ~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l-------~~---~~~~~~~~~~L~~lgL~~-~~~~~~~~LSGGekQRvaI 239 (607)
T 3bk7_A 171 LKNGEIRPVVKPQYVDLLPKAVKGKVRELL-------KK---VDEVGKFEEVVKELELEN-VLDRELHQLSGGELQRVAI 239 (607)
T ss_dssp HHHTSCCCEEECSCGGGGGGTCCSBHHHHH-------HH---TCCSSCHHHHHHHTTCTT-GGGSBGGGCCHHHHHHHHH
T ss_pred hhhhhcceEEeechhhhchhhccccHHHHh-------hh---hHHHHHHHHHHHHcCCCc-hhCCChhhCCHHHHHHHHH
Confidence 000 0 00000000000000011232222 11 112345788999999974 6799999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEE--EEcCCHHHHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLY--YYKGNYSMFK 378 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~--~~~g~y~~f~ 378 (548)
||||+.+|+||||||||||||+.++.++.++|+++ +.|||+||||++++..+||+|++|+++... .+...++...
T Consensus 240 AraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~~~~~g~~~~~~~~~~ 319 (607)
T 3bk7_A 240 AAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRN 319 (607)
T ss_dssp HHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESCTTTEEEECCCEEHHH
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCCccccceeccchhHHH
Confidence 99999999999999999999999999999888765 789999999999999999999999864221 1222222100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceeeeecCC
Q psy11936 379 KMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFPD 458 (548)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f~~ 458 (548)
.+....... ........ ......+.++.
T Consensus 320 -------------------~i~~~~~~~------------------------~~~~~~~~---------~~~~~~~~~~~ 347 (607)
T 3bk7_A 320 -------------------GINEFLQGY------------------------LKDENVRF---------RPYEIRFTKLS 347 (607)
T ss_dssp -------------------HHHHHHHTE------------------------ETTTTEEC---------CSSCCCCCCST
T ss_pred -------------------HHHHHHhhc------------------------chhhhhhc---------cccccccccCC
Confidence 000000000 00000000 00011222222
Q ss_pred CC--CCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeeeee
Q psy11936 459 PP--PLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAYEG 531 (548)
Q Consensus 459 ~~--~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y~~ 531 (548)
+. ..+.++|++++++++|++ ..|++++|.. .|+.+.|.||| |||+|+|+|.++|++|.|+. +.+++|+.
T Consensus 348 ~~~~~~~~~~l~~~~l~~~~~~--~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~--~~~i~~v~ 423 (607)
T 3bk7_A 348 ERVDVERETLVEYPRLVKDYGS--FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW--DLTVAYKP 423 (607)
T ss_dssp TSCCCCCCEEEEECCEEEECSS--CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC--CCCEEEEC
T ss_pred CcccccCceEEEEeceEEEecc--eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE--eeEEEEEe
Confidence 11 235679999999999964 4688888874 89999999997 89999999999999999976 57899999
Q ss_pred cccee
Q psy11936 532 MKPLL 536 (548)
Q Consensus 532 ~~~~~ 536 (548)
|++.+
T Consensus 424 Q~~~~ 428 (607)
T 3bk7_A 424 QYIKA 428 (607)
T ss_dssp SSCCC
T ss_pred cCccC
Confidence 99754
No 22
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.8e-42 Score=364.38 Aligned_cols=214 Identities=27% Similarity=0.354 Sum_probs=165.7
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|++..+|+|+||+|.+|++++|+||||||||||||+|+|. ..|.+|+|.++++++...... .
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--~~p~~G~I~i~g~~i~~~~~~--~---- 82 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL--EEPTEGRIYFGDRDVTYLPPK--D---- 82 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS--SCCSEEEEEETTEECTTSCGG--G----
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcC--CCCCceEEEECCEECCCCChh--h----
Confidence 59999999999988899999999999999999999999999999999985 478899999999877432211 0
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
+..+++++.. ..+..+++.+++.... .+..........++.++|+.+|+. ...++++.+|||||||||+|||
T Consensus 83 ---r~ig~v~Q~~---~l~~~ltv~eni~~~~-~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRvalAr 154 (372)
T 1v43_A 83 ---RNISMVFQSY---AVWPHMTVYENIAFPL-KIKKFPKDEIDKRVRWAAELLQIE-ELLNRYPAQLSGGQRQRVAVAR 154 (372)
T ss_dssp ---GTEEEEEC---------CCCHHHHHHTTC-C--CCCHHHHHHHHHHHHHHTTCG-GGTTSCTTTCCSSCHHHHHHHH
T ss_pred ---CcEEEEecCc---ccCCCCCHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHH
Confidence 0111111111 1122345555543210 000011112245788999999997 4679999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
||+.+|+||||||||++||+..+..+.++|+++ +.|+|+||||++++..+||+|++|++|+++.. |+.++
T Consensus 155 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~-g~~~~ 228 (372)
T 1v43_A 155 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQI-GSPTE 228 (372)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE-ECHHH
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHHH
Confidence 999999999999999999999999888888654 68999999999999999999999999999876 55443
No 23
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=2.7e-42 Score=360.31 Aligned_cols=210 Identities=27% Similarity=0.296 Sum_probs=168.0
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|++. +|+++||+|.+|++++|+||||||||||||+|+|. ..|.+|+|.++++++.... ...
T Consensus 1 ml~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--~~p~~G~I~~~g~~i~~~~--~~~---- 71 (348)
T 3d31_A 1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGF--HVPDSGRILLDGKDVTDLS--PEK---- 71 (348)
T ss_dssp CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTS--SCCSEEEEEETTEECTTSC--HHH----
T ss_pred CEEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcC--CCCCCcEEEECCEECCCCc--hhh----
Confidence 37899999999888 99999999999999999999999999999999985 4788999999998764311 111
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
+..+++++. ...+..+++.+++.... ...+.... .++.++|+.+|+.. ..++++.+|||||||||+|||
T Consensus 72 ---r~ig~v~Q~---~~l~~~ltv~enl~~~~---~~~~~~~~-~~v~~~l~~~~L~~-~~~~~~~~LSgGq~QRvalAr 140 (348)
T 3d31_A 72 ---HDIAFVYQN---YSLFPHMNVKKNLEFGM---RMKKIKDP-KRVLDTARDLKIEH-LLDRNPLTLSGGEQQRVALAR 140 (348)
T ss_dssp ---HTCEEECTT---CCCCTTSCHHHHHHHHH---HHHCCCCH-HHHHHHHHHTTCTT-TTTSCGGGSCHHHHHHHHHHH
T ss_pred ---CcEEEEecC---cccCCCCCHHHHHHHHH---HHcCCCHH-HHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHH
Confidence 111112111 11223457777764322 11122223 78899999999974 679999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
||+.+|+||||||||++||+.++..+.++|+++ +.|+|+||||++++..+||+|++|++|+++.. |+.++
T Consensus 141 aL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~-g~~~~ 214 (348)
T 3d31_A 141 ALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQV-GKPEE 214 (348)
T ss_dssp HTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEE-ECHHH
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-CCHHH
Confidence 999999999999999999999999888888654 68999999999999999999999999999876 55443
No 24
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=3.4e-42 Score=362.65 Aligned_cols=216 Identities=23% Similarity=0.310 Sum_probs=169.0
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc----hhHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD----LTAVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~----~~~~~ 221 (548)
+|+++||+++|++..+|+|+||+|.+|++++|+||||||||||||+|+|. ..|.+|+|.++++++.... ....
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--~~p~~G~I~i~g~~~~~~~~~~~~~~~- 79 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL--EEPSRGQIYIGDKLVADPEKGIFVPPK- 79 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS--SCCSEEEEEETTEEEEEGGGTEECCGG-
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcC--CCCCccEEEECCEECccccccccCCHh-
Confidence 48999999999988999999999999999999999999999999999985 4688999999998774300 0000
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
.+..+++++. ...+..+++.+++..... +..........++.++|+.+|+. ...++++.+|||||||||
T Consensus 80 ------~r~ig~v~Q~---~~l~~~ltv~eni~~~~~-~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRv 148 (372)
T 1g29_1 80 ------DRDIAMVFQS---YALYPHMTVYDNIAFPLK-LRKVPRQEIDQRVREVAELLGLT-ELLNRKPRELSGGQRQRV 148 (372)
T ss_dssp ------GSSEEEECSC---CCCCTTSCHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHTCG-GGTTCCGGGSCHHHHHHH
T ss_pred ------HCCEEEEeCC---CccCCCCCHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHCCCc-hHhcCCcccCCHHHHHHH
Confidence 0011111111 112234567776643211 11111122346788999999997 467999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
+|||||+.+|+||||||||++||+.++..+.++|+++ +.|+|+||||++++..+||+|++|++|+++.. |+.++
T Consensus 149 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~-g~~~~ 226 (372)
T 1g29_1 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQV-GSPDE 226 (372)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE-ECHHH
T ss_pred HHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEe-CCHHH
Confidence 9999999999999999999999999999888887654 68999999999999999999999999999876 55443
No 25
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=8e-43 Score=365.54 Aligned_cols=212 Identities=27% Similarity=0.306 Sum_probs=167.1
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|++..+|+|+||+|.+|++++|+||||||||||||+|+|. ..|.+|+|.++++++...... .
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--~~p~~G~I~i~g~~i~~~~~~--~---- 74 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGI--YKPTSGEIYFDDVLVNDIPPK--Y---- 74 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTS--SCCSEEEEEETTEECTTSCGG--G----
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCC--CCCCccEEEECCEECCCCChh--h----
Confidence 48999999999988999999999999999999999999999999999985 478899999999877432211 0
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC--CChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA--DSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~--~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
+..+++++. ...+...++.+++... +...+. .....++.++|+.+|+. ...++++.+|||||||||+|
T Consensus 75 ---r~ig~v~Q~---~~l~~~ltv~eni~~~---~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSgGq~QRval 144 (359)
T 2yyz_A 75 ---REVGMVFQN---YALYPHMTVFENIAFP---LRARRISKDEVEKRVVEIARKLLID-NLLDRKPTQLSGGQQQRVAL 144 (359)
T ss_dssp ---TTEEEECSS---CCCCTTSCHHHHHHGG---GSSSCSHHHHTTHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHH
T ss_pred ---CcEEEEecC---cccCCCCCHHHHHHHH---HHhcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHH
Confidence 111111111 1122344666655321 100011 11235788999999997 46799999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
||||+.+|+||||||||++||+.++..+.++|+++ +.|+|+||||++++..+||+|++|++|+++.. |+.++
T Consensus 145 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~-g~~~~ 220 (359)
T 2yyz_A 145 ARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQY-GTPDE 220 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEE-ECHHH
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEe-CCHHH
Confidence 99999999999999999999999999888888654 68999999999999999999999999999876 55443
No 26
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=5.4e-43 Score=366.48 Aligned_cols=214 Identities=28% Similarity=0.374 Sum_probs=167.2
Q ss_pred cEEEEeEEEEeCCce--eeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc---hhHH
Q psy11936 146 DIKVENFSISAKGND--LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD---LTAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~~~--iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~---~~~~ 220 (548)
+|+++||+++|++.. +|+|+||+|.+|++++|+||||||||||||+|+|. ..|.+|+|.+.++++.... ....
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--~~p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGL--DVPSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTS--SCCSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCC--CCCCceEEEECCEECcccccccCChh
Confidence 589999999998888 99999999999999999999999999999999985 4788999999998774310 0000
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC--CChHHHHHHHHHhCCCChhhhhcccCCCCHHHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA--DSAEPRARRILAGLGFSRAMQDRATKNFSGGWR 298 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~--~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqk 298 (548)
. +..+++++. ...+...++.+++... +...+. .....++.++|+.+|+. ...++++.+||||||
T Consensus 81 ~-------r~ig~v~Q~---~~l~~~ltv~eni~~~---~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LSGGq~ 146 (353)
T 1oxx_K 81 D-------RKIGMVFQT---WALYPNLTAFENIAFP---LTNMKMSKEEIRKRVEEVAKILDIH-HVLNHFPRELSGAQQ 146 (353)
T ss_dssp G-------SCEEEEETT---SCCCTTSCHHHHHHGG---GTTSSCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHH
T ss_pred h-------CCEEEEeCC---CccCCCCCHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHH
Confidence 0 011111111 1122345666655321 111111 12346788999999997 467999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
|||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|+|+||||++++..+||+|++|++|+++.. |+.
T Consensus 147 QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~-g~~ 225 (353)
T 1oxx_K 147 QRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQV-GKP 225 (353)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEE-ECH
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-cCH
Confidence 9999999999999999999999999999998888887654 68999999999999999999999999999876 554
Q ss_pred HH
Q psy11936 375 SM 376 (548)
Q Consensus 375 ~~ 376 (548)
++
T Consensus 226 ~~ 227 (353)
T 1oxx_K 226 ED 227 (353)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 27
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.8e-41 Score=339.81 Aligned_cols=196 Identities=26% Similarity=0.316 Sum_probs=154.9
Q ss_pred cEEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEE------EeceeeccCchh
Q psy11936 146 DIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL------YCEQEVVADDLT 218 (548)
Q Consensus 146 ~I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~------~~~q~i~~~~~~ 218 (548)
+|+++||+++|+ ++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|. |..|+....
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~I~~~~~i~~v~q~~~~~--- 78 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGI--HRPIQGKIEVYQSIGFVPQFFSSP--- 78 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTS--SCCSEEEEEECSCEEEECSCCCCS---
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEEeccEEEEcCCCccC---
Confidence 589999999998 88999999999999999999999999999999999985 467778764 333332111
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcC-----CCChHHHHHHHHHhCCCChhhhhcccCCC
Q psy11936 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG-----ADSAEPRARRILAGLGFSRAMQDRATKNF 293 (548)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-----~~~~~~~~~~~L~~lgl~~~~~~~~~~~L 293 (548)
+..++.+++.... ....+ ......++.++|+.+|+.+ ..++++.+|
T Consensus 79 --------------------------~~~tv~enl~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~L 129 (253)
T 2nq2_C 79 --------------------------FAYSVLDIVLMGR--STHINTFAKPKSHDYQVAMQALDYLNLTH-LAKREFTSL 129 (253)
T ss_dssp --------------------------SCCBHHHHHHGGG--GGGSCTTCCCCHHHHHHHHHHHHHTTCGG-GTTSBGGGS
T ss_pred --------------------------CCCCHHHHHHHhh--hhhcccccCCCHHHHHHHHHHHHHcCChH-HhcCChhhC
Confidence 1112222221100 00000 0112356788999999974 678999999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
||||||||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+ +.
T Consensus 130 SgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~ 208 (253)
T 2nq2_C 130 SGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FK 208 (253)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-Ee
Confidence 999999999999999999999999999999999999999988765 6799999999999999999999999999 54
Q ss_pred EcCCHHHH
Q psy11936 370 YKGNYSMF 377 (548)
Q Consensus 370 ~~g~y~~f 377 (548)
.|+.+++
T Consensus 209 -~g~~~~~ 215 (253)
T 2nq2_C 209 -FGETRNI 215 (253)
T ss_dssp -EEEHHHH
T ss_pred -cCCHHHH
Confidence 4665543
No 28
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=2.8e-42 Score=343.11 Aligned_cols=210 Identities=23% Similarity=0.259 Sum_probs=161.6
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|++ +|+|+||+|++ +++||+|||||||||||++|+|. ..|.+|+|.++++++..... ..
T Consensus 1 ml~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~--~~---- 69 (240)
T 2onk_A 1 MFLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGI--VKPDRGEVRLNGADITPLPP--ER---- 69 (240)
T ss_dssp CCEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTS--SCCSEEEEEETTEECTTSCT--TT----
T ss_pred CEEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEECCcCch--hh----
Confidence 3789999999976 59999999999 99999999999999999999985 46889999999887632110 00
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
...+++++. .......++.+++.... ...+......++.++|+.+|+.+ ..++++.+|||||||||+|||
T Consensus 70 ---~~i~~v~q~---~~l~~~ltv~enl~~~~---~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAr 139 (240)
T 2onk_A 70 ---RGIGFVPQD---YALFPHLSVYRNIAYGL---RNVERVERDRRVREMAEKLGIAH-LLDRKPARLSGGERQRVALAR 139 (240)
T ss_dssp ---SCCBCCCSS---CCCCTTSCHHHHHHTTC---TTSCHHHHHHHHHHHHHTTTCTT-TTTCCGGGSCHHHHHHHHHHH
T ss_pred ---CcEEEEcCC---CccCCCCcHHHHHHHHH---HHcCCchHHHHHHHHHHHcCCHH-HhcCChhhCCHHHHHHHHHHH
Confidence 011111111 01112335555442110 00000112456889999999974 578999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
||+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+++
T Consensus 140 al~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~-g~~~~~ 214 (240)
T 2onk_A 140 ALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEK-GKLKEL 214 (240)
T ss_dssp HHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE-ECHHHH
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-CCHHHH
Confidence 999999999999999999999999999988764 67999999999999999999999999999864 666554
No 29
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2e-41 Score=341.24 Aligned_cols=206 Identities=25% Similarity=0.267 Sum_probs=164.9
Q ss_pred cEEEEeEEEEeCC----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 146 DIKVENFSISAKG----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~~----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
+|+++||+++|++ +.+|+++||+|. |+++||+|||||||||||++|+|. . |.+|+|.+.++++... ..
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl--~-p~~G~I~~~g~~~~~~--~~-- 72 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGL--L-PYSGNIFINGMEVRKI--RN-- 72 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTS--S-CCEEEEEETTEEGGGC--SC--
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCC--C-CCCcEEEECCEECcch--HH--
Confidence 3789999999987 789999999999 999999999999999999999984 4 8899999988765321 00
Q ss_pred HHHHhhHHHHH-HHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHH
Q psy11936 222 SVLKADVKRTE-LLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300 (548)
Q Consensus 222 ~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqR 300 (548)
.+... ++++.. .. ..++.+++.... .+ . .....++.++|+.+|+.....++++.+||||||||
T Consensus 73 ------~~~i~~~v~Q~~----~l-~~tv~enl~~~~-~~---~-~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqR 136 (263)
T 2pjz_A 73 ------YIRYSTNLPEAY----EI-GVTVNDIVYLYE-EL---K-GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVL 136 (263)
T ss_dssp ------CTTEEECCGGGS----CT-TSBHHHHHHHHH-HH---T-CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHH
T ss_pred ------hhheEEEeCCCC----cc-CCcHHHHHHHhh-hh---c-chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHH
Confidence 00111 122111 11 345555553211 11 1 23456788999999997235789999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcC-EEEEEeCCEEEEEcCCHHH
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCN-EIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vad-rIi~L~~G~i~~~~g~y~~ 376 (548)
|+|||||+.+|+||||||||++||+.++.++.++|.++..|||+||||++++..+|| +|++|++|+++.. |+.++
T Consensus 137 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~~~-g~~~~ 212 (263)
T 2pjz_A 137 VRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQGP-ISVSE 212 (263)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEEEE-EEHHH
T ss_pred HHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEEEe-cCHHH
Confidence 999999999999999999999999999999999999886699999999999999999 9999999999865 55443
No 30
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=2.2e-41 Score=338.00 Aligned_cols=209 Identities=22% Similarity=0.315 Sum_probs=159.5
Q ss_pred cEEEEeEEEEe--CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISA--KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y--~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+++| +++.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+++.++.......+..
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~I~i~g~~~~~~~~~~~~~- 83 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF--YIPENGQVLIDGHDLALADPNWLRR- 83 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS--SCCSEEEEEETTEETTTSCHHHHHH-
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCEEhhhCCHHHHHh-
Confidence 58999999999 467899999999999999999999999999999999985 4688999999998764322211111
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhh-----------cccCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQD-----------RATKN 292 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~-----------~~~~~ 292 (548)
..+++++.. ..+..++.+++.. ........++.++++.+++.. ..+ +++.+
T Consensus 84 ------~i~~v~Q~~----~l~~~tv~enl~~-------~~~~~~~~~~~~~l~~~~l~~-~~~~~~~gl~~~~~~~~~~ 145 (247)
T 2ff7_A 84 ------QVGVVLQDN----VLLNRSIIDNISL-------ANPGMSVEKVIYAAKLAGAHD-FISELREGYNTIVGEQGAG 145 (247)
T ss_dssp ------HEEEECSSC----CCTTSBHHHHHTT-------TCTTCCHHHHHHHHHHHTCHH-HHHTSTTGGGCBCSTTTTC
T ss_pred ------cEEEEeCCC----ccccccHHHHHhc-------cCCCCCHHHHHHHHHHhChHH-HHHhCcchhhhhhhCCCCC
Confidence 111111110 1122355544421 011123456677788888753 333 34589
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|||||||||+|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++. .||+|++|++|+++..
T Consensus 146 LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~-~~d~v~~l~~G~i~~~ 224 (247)
T 2ff7_A 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQ 224 (247)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TSSEEEEEETTEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998775 679999999999986 4999999999999865
Q ss_pred cCCHHHH
Q psy11936 371 KGNYSMF 377 (548)
Q Consensus 371 ~g~y~~f 377 (548)
|+.+++
T Consensus 225 -g~~~~l 230 (247)
T 2ff7_A 225 -GKHKEL 230 (247)
T ss_dssp -ECHHHH
T ss_pred -CCHHHH
Confidence 666554
No 31
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=2.3e-41 Score=342.29 Aligned_cols=211 Identities=22% Similarity=0.347 Sum_probs=159.4
Q ss_pred cEEEEeEEEEeCC---ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKG---NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~---~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
+|+++||+++|++ ..+|++|||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.++++++.......+..
T Consensus 16 ~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl--~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 16 LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL--YQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS--SCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred eEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCCEEEECCEEcccCCHHHHhc
Confidence 5999999999986 6899999999999999999999999999999999985 4688999999998764322111111
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCC-h-------HHHHHHHHHhC--CCChhhhhcccCC
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADS-A-------EPRARRILAGL--GFSRAMQDRATKN 292 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~-~-------~~~~~~~L~~l--gl~~~~~~~~~~~ 292 (548)
...++++.. ..+..++.+++... ...... . ...+.+++..+ |+. ...++++.+
T Consensus 94 -------~i~~v~Q~~----~l~~~tv~enl~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~-~~~~~~~~~ 156 (271)
T 2ixe_A 94 -------QVAAVGQEP----LLFGRSFRENIAYG-----LTRTPTMEEITAVAMESGAHDFISGFPQGYD-TEVGETGNQ 156 (271)
T ss_dssp -------HEEEECSSC----CCCSSBHHHHHHTT-----CSSCCCHHHHHHHHHHHTCHHHHHHSTTGGG-SBCCGGGTT
T ss_pred -------cEEEEecCC----ccccccHHHHHhhh-----cccCChHHHHHHHHHHHhHHHHHHhhhcchh-hhhcCCcCC
Confidence 111111110 11223555544210 000011 0 11234567777 665 346788999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLY 368 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~ 368 (548)
|||||||||+|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++.. ||+|++|++|+++
T Consensus 157 LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~ 235 (271)
T 2ixe_A 157 LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVC 235 (271)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999875 4699999999999875 9999999999998
Q ss_pred EEcCCHHHH
Q psy11936 369 YYKGNYSMF 377 (548)
Q Consensus 369 ~~~g~y~~f 377 (548)
.. |+.+++
T Consensus 236 ~~-g~~~~l 243 (271)
T 2ixe_A 236 EQ-GTHLQL 243 (271)
T ss_dssp EE-ECHHHH
T ss_pred EE-CCHHHH
Confidence 64 666554
No 32
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=2.4e-40 Score=340.08 Aligned_cols=211 Identities=21% Similarity=0.292 Sum_probs=161.9
Q ss_pred cEEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.|+++||+|+|+ +..+|+||||+|.+|+++|||||||||||||+++|+|. ..|.+|.|.++++++...+...++..
T Consensus 53 ~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl--~~p~~G~I~i~G~~i~~~~~~~~r~~- 129 (306)
T 3nh6_A 53 RIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRF--YDISSGCIRIDGQDISQVTQASLRSH- 129 (306)
T ss_dssp CEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTS--SCCSEEEEEETTEETTSBCHHHHHHT-
T ss_pred eEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcC--CCCCCcEEEECCEEcccCCHHHHhcc-
Confidence 599999999995 57899999999999999999999999999999999974 57889999999998755443222211
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh----------hhhcccCCCC
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA----------MQDRATKNFS 294 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~~~~~~~~LS 294 (548)
.+++++. ...+..++.+++.. ........++..++..+++... ..+..+.+||
T Consensus 130 ------i~~v~Q~----~~lf~~Tv~eNi~~-------~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LS 192 (306)
T 3nh6_A 130 ------IGVVPQD----TVLFNDTIADNIRY-------GRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLS 192 (306)
T ss_dssp ------EEEECSS----CCCCSEEHHHHHHT-------TSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCC
T ss_pred ------eEEEecC----CccCcccHHHHHHh-------hcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCC
Confidence 1111111 12234455555421 0111223455566666665422 2234557999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
|||||||+|||||+.+|+||||||||++||+.+...|.+.|.++ +.|+|+||||++.+.. ||+|++|++|+|+.. |
T Consensus 193 GGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~-G 270 (306)
T 3nh6_A 193 GGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDGCIVER-G 270 (306)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETTEEEEE-E
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECCEEEEE-C
Confidence 99999999999999999999999999999999999999988765 5799999999999986 999999999999975 7
Q ss_pred CHHHHH
Q psy11936 373 NYSMFK 378 (548)
Q Consensus 373 ~y~~f~ 378 (548)
+++++.
T Consensus 271 ~~~el~ 276 (306)
T 3nh6_A 271 RHEALL 276 (306)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 776654
No 33
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.8e-40 Score=331.79 Aligned_cols=207 Identities=24% Similarity=0.269 Sum_probs=161.1
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++ .+|+|+||+|.+|+++||+|||||||||||++|+|. ..|. |+|.+.++++.......+..
T Consensus 4 ~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl--~~p~-G~i~~~g~~~~~~~~~~~~~--- 73 (249)
T 2qi9_C 4 VMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM--TSGK-GSIQFAGQPLEAWSATKLAL--- 73 (249)
T ss_dssp EEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS--SCCE-EEEEETTEEGGGSCHHHHHH---
T ss_pred EEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCC-eEEEECCEECCcCCHHHHhc---
Confidence 5899999986 699999999999999999999999999999999985 4567 99999988764322111111
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
...++++. ....+..++.+++.. ...... ...++.++|+.+|+.+ ..++++.+|||||||||+|||
T Consensus 74 ----~i~~v~q~---~~~~~~~tv~e~l~~-----~~~~~~-~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~lAr 139 (249)
T 2qi9_C 74 ----HRAYLSQQ---QTPPFATPVWHYLTL-----HQHDKT-RTELLNDVAGALALDD-KLGRSTNQLSGGEWQRVRLAA 139 (249)
T ss_dssp ----HEEEECSC---CCCCTTCBHHHHHHT-----TCSSTT-CHHHHHHHHHHTTCGG-GTTSBGGGCCHHHHHHHHHHH
T ss_pred ----eEEEECCC---CccCCCCcHHHHHHH-----hhccCC-cHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHH
Confidence 11111111 011223455555421 000111 2667889999999974 678999999999999999999
Q ss_pred HHccCCC-------EEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHH
Q psy11936 306 ALYIEPT-------LLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 306 aL~~~P~-------lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~ 375 (548)
||+.+|+ ||||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+
T Consensus 140 aL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~-g~~~ 218 (249)
T 2qi9_C 140 VVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLAS-GRRE 218 (249)
T ss_dssp HHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEE-EEHH
T ss_pred HHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHH
Confidence 9999999 99999999999999999999998765 57999999999999999999999999999864 5554
Q ss_pred HH
Q psy11936 376 MF 377 (548)
Q Consensus 376 ~f 377 (548)
++
T Consensus 219 ~~ 220 (249)
T 2qi9_C 219 EV 220 (249)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 34
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=6.1e-41 Score=333.80 Aligned_cols=211 Identities=18% Similarity=0.252 Sum_probs=158.2
Q ss_pred cEEEEeEEEEe-CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISA-KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y-~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
+|+++||+++| +++.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.++++++.......+.
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~--- 75 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERF--YQPTAGEITIDGQPIDNISLENWR--- 75 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTS--SCCSBSCEEETTEESTTTSCSCCT---
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCEEhhhCCHHHHH---
Confidence 37899999999 667899999999999999999999999999999999985 468899999998876432111000
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhh----------hhcccCCCC
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAM----------QDRATKNFS 294 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~----------~~~~~~~LS 294 (548)
....++++.. ..+..++.+++... ........++.++++.+++.+.. .++++.+||
T Consensus 76 ----~~i~~v~q~~----~l~~~tv~enl~~~------~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LS 141 (243)
T 1mv5_A 76 ----SQIGFVSQDS----AIMAGTIRENLTYG------LEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKIS 141 (243)
T ss_dssp ----TTCCEECCSS----CCCCEEHHHHTTSC------TTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCC
T ss_pred ----hhEEEEcCCC----ccccccHHHHHhhh------ccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCC
Confidence 0011111110 11223444443210 01122345677888888886321 124567999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
|||||||+|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++. .||+|++|++|+++. .|
T Consensus 142 gGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~-~g 219 (243)
T 1mv5_A 142 GGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQITG-SG 219 (243)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEECC-CS
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCCEEEEEECCEEEE-eC
Confidence 99999999999999999999999999999999988888888765 679999999999986 599999999999975 57
Q ss_pred CHHHH
Q psy11936 373 NYSMF 377 (548)
Q Consensus 373 ~y~~f 377 (548)
+.+.+
T Consensus 220 ~~~~~ 224 (243)
T 1mv5_A 220 KHNEL 224 (243)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 76654
No 35
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=4e-40 Score=331.30 Aligned_cols=209 Identities=20% Similarity=0.290 Sum_probs=158.1
Q ss_pred cEEEEeEEEEeCC---ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKG---NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~---~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
+|+++||+++|++ ..+|+|+||+|.+|+++||+|||||||||||++|+|.. .+ +|+|.+.+.++.......+.
T Consensus 17 ~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~~-~G~I~i~g~~i~~~~~~~~~- 92 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFY--DA-EGDIKIGGKNVNKYNRNSIR- 92 (260)
T ss_dssp CEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS--CC-EEEEEETTEEGGGBCHHHHH-
T ss_pred eEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccC--CC-CeEEEECCEEhhhcCHHHHh-
Confidence 5999999999976 46999999999999999999999999999999999852 34 89999998876432211110
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhh----------hhcccCC
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAM----------QDRATKN 292 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~----------~~~~~~~ 292 (548)
....++++. ...+..++.+++.. ........++.++++.+++.... .++++.+
T Consensus 93 ------~~i~~v~Q~----~~l~~~tv~enl~~-------~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~ 155 (260)
T 2ghi_A 93 ------SIIGIVPQD----TILFNETIKYNILY-------GKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMK 155 (260)
T ss_dssp ------TTEEEECSS----CCCCSEEHHHHHHT-------TCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBC
T ss_pred ------ccEEEEcCC----CcccccCHHHHHhc-------cCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCc
Confidence 011111111 11123455555421 01112245667778888775321 1356789
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|||||||||+|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++. .||+|++|++|+++..
T Consensus 156 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~~d~i~~l~~G~i~~~ 234 (260)
T 2ghi_A 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-SAESIILLNKGKIVEK 234 (260)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-TCSEEEEEETTEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998775 579999999999986 5999999999999864
Q ss_pred cCCHHHH
Q psy11936 371 KGNYSMF 377 (548)
Q Consensus 371 ~g~y~~f 377 (548)
|+.+.+
T Consensus 235 -g~~~~l 240 (260)
T 2ghi_A 235 -GTHKDL 240 (260)
T ss_dssp -ECHHHH
T ss_pred -CCHHHH
Confidence 676654
No 36
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1e-40 Score=326.33 Aligned_cols=199 Identities=20% Similarity=0.285 Sum_probs=155.3
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
..|+++||+++|++ .+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.++++++. . .
T Consensus 9 ~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl--~~p~~G~I~~~g~~~~--~---~---- 76 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY--LKPLKGEIIYNGVPIT--K---V---- 76 (214)
T ss_dssp CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTS--SCCSEEEEEETTEEGG--G---G----
T ss_pred ceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCeEEEECCEEhh--h---h----
Confidence 46999999999988 999999999999999999999999999999999985 4688999999887653 1 0
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
.....++++. .......++.+++.... .+... ... ..++.++|+.+|+.. . ++++.+|||||||||+||
T Consensus 77 ---~~~i~~v~q~---~~~~~~~tv~enl~~~~-~~~~~-~~~-~~~~~~~l~~~gl~~-~-~~~~~~LSgGqkqrv~la 145 (214)
T 1sgw_A 77 ---KGKIFFLPEE---IIVPRKISVEDYLKAVA-SLYGV-KVN-KNEIMDALESVEVLD-L-KKKLGELSQGTIRRVQLA 145 (214)
T ss_dssp ---GGGEEEECSS---CCCCTTSBHHHHHHHHH-HHTTC-CCC-HHHHHHHHHHTTCCC-T-TSBGGGSCHHHHHHHHHH
T ss_pred ---cCcEEEEeCC---CcCCCCCCHHHHHHHHH-HhcCC-chH-HHHHHHHHHHcCCCc-C-CCChhhCCHHHHHHHHHH
Confidence 0011111111 01122346666654321 11111 223 677889999999975 4 889999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
|||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|+.+ .|+|
T Consensus 146 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 146 STLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp HHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred HHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 9999999999999999999999999999988765 479999999999999999998755 3444
No 37
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-39 Score=345.35 Aligned_cols=207 Identities=20% Similarity=0.302 Sum_probs=163.3
Q ss_pred ccEEEEeEEEEe--CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 145 VDIKVENFSISA--KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 145 ~~I~l~nls~~y--~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
..|+++||+++| ++..+|+||||+|.+|++++|+|||||||||||++|+|.. . .+|+|.+.++++.......+..
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~--~-~~G~I~i~G~~i~~~~~~~~rr 94 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL--N-TEGEIQIDGVSWDSITLEQWRK 94 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS--E-EEEEEEESSCBTTSSCHHHHHH
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC--C-CCeEEEECCEECCcCChHHHhC
Confidence 359999999999 6678999999999999999999999999999999999852 3 7899999998775433221111
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCC----------
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKN---------- 292 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~---------- 292 (548)
. .+++++. ...+..++.+++. ........++.++|+.+++. ...++++.+
T Consensus 95 ~-------ig~v~Q~----~~lf~~tv~enl~--------~~~~~~~~~v~~~l~~~~L~-~~~~~~p~~l~~~i~~~g~ 154 (390)
T 3gd7_A 95 A-------FGVIPQK----VFIFSGTFRKNLD--------PNAAHSDQEIWKVADEVGLR-SVIEQFPGKLDFVLVDGGC 154 (390)
T ss_dssp T-------EEEESCC----CCCCSEEHHHHHC--------TTCCSCHHHHHHHHHHTTCH-HHHTTSTTGGGCEECTTTT
T ss_pred C-------EEEEcCC----cccCccCHHHHhh--------hccccCHHHHHHHHHHhCCH-HHHhhcccccccccccccc
Confidence 1 1111111 1123345554431 11233466788999999997 467888888
Q ss_pred -CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 293 -FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 293 -LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
|||||||||+|||||+.+|+||||||||++||+..+..+.+.|++. +.|+|+||||.+.+ ..||+|++|++|+|+.
T Consensus 155 ~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~-~~aDri~vl~~G~i~~ 233 (390)
T 3gd7_A 155 VLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAM-LECDQFLVIEENKVRQ 233 (390)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGG-TTCSEEEEEETTEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHH-HhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999875 57999999998866 4699999999999998
Q ss_pred EcCCHHH
Q psy11936 370 YKGNYSM 376 (548)
Q Consensus 370 ~~g~y~~ 376 (548)
+ |+..+
T Consensus 234 ~-g~~~e 239 (390)
T 3gd7_A 234 Y-DSILE 239 (390)
T ss_dssp E-SSHHH
T ss_pred E-CCHHH
Confidence 7 44433
No 38
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=8.8e-39 Score=383.06 Aligned_cols=212 Identities=20% Similarity=0.303 Sum_probs=159.6
Q ss_pred cEEEEeEEEEeCC---ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKG---NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~---~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
.|+++||+|+|++ .++|+|+||+|++|+++|||||||||||||+++|+|. ..|.+|+|.++|.++...+...++.
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~--~~~~~G~i~i~g~~i~~~~~~~~r~ 464 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRL--YDPLDGMVSIDGQDIRTINVRYLRE 464 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTS--SCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCeEEEECCEEHHhCCHHHHHh
Confidence 5999999999974 3699999999999999999999999999999999974 5788999999998876544333222
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh----------hhhhcccCC
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR----------AMQDRATKN 292 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~----------~~~~~~~~~ 292 (548)
.+ +++.|. ...+..++.+++... ........+.+++...++.+ ........+
T Consensus 465 ~i-------~~v~Q~----~~l~~~ti~eNi~~g-------~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 526 (1284)
T 3g5u_A 465 II-------GVVSQE----PVLFATTIAENIRYG-------REDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQ 526 (1284)
T ss_dssp HE-------EEECSS----CCCCSSCHHHHHHHH-------CSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCS
T ss_pred he-------EEEcCC----CccCCccHHHHHhcC-------CCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCc
Confidence 11 111111 112344555554310 11122334444444444321 122345668
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|||||||||+|||||+.+|+|||||||||+||+.+..++.+.|... ++|+|+|||+++++.. ||+|++|++|++++
T Consensus 527 LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~- 604 (1284)
T 3g5u_A 527 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVE- 604 (1284)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEECSSSCCCC-
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-
Confidence 9999999999999999999999999999999999999999888654 6899999999999976 99999999999986
Q ss_pred cCCHHHHHH
Q psy11936 371 KGNYSMFKK 379 (548)
Q Consensus 371 ~g~y~~f~~ 379 (548)
.|+++++..
T Consensus 605 ~g~~~~l~~ 613 (1284)
T 3g5u_A 605 QGNHDELMR 613 (1284)
T ss_dssp EECHHHHHH
T ss_pred ECCHHHHHh
Confidence 478776543
No 39
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.8e-38 Score=313.35 Aligned_cols=190 Identities=26% Similarity=0.365 Sum_probs=141.1
Q ss_pred cEEEEeEEEEeC--CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEec------eeeccCch
Q psy11936 146 DIKVENFSISAK--GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCE------QEVVADDL 217 (548)
Q Consensus 146 ~I~l~nls~~y~--~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~------q~i~~~~~ 217 (548)
+|+++||+++|+ ++++|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+ |+.....
T Consensus 6 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~i~~v~q~~~~~~- 82 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE--LEPSEGKIKHSGRISFCSQFSWIMP- 82 (229)
T ss_dssp EEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS--SCCSEEEEEECSCEEEECSSCCCCS-
T ss_pred eEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CcCCccEEEECCEEEEEecCCcccC-
Confidence 589999999995 47899999999999999999999999999999999985 467788877654 2211111
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh----------hhh
Q psy11936 218 TAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA----------MQD 287 (548)
Q Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~~~ 287 (548)
.++.+++.. +......+...++..+++... ..+
T Consensus 83 -----------------------------~tv~enl~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 125 (229)
T 2pze_A 83 -----------------------------GTIKENIIF--------GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 125 (229)
T ss_dssp -----------------------------BCHHHHHHT--------TSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBC
T ss_pred -----------------------------CCHHHHhhc--------cCCcChHHHHHHHHHhCcHHHHHhCccccccccc
Confidence 122221110 000001112223333333211 123
Q ss_pred cccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH-hhc--CCeEEEEecCHHHHHhhcCEEEEEeC
Q psy11936 288 RATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYL-QGW--KKTLLIVSHDQSFLDNVCNEIIHLDQ 364 (548)
Q Consensus 288 ~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L-~~~--~~TvIiVSHD~~~l~~vadrIi~L~~ 364 (548)
+++.+|||||||||+|||||+.+|+||||||||++||+.++..+.+.+ ..+ +.|||+||||++++. .||+|++|++
T Consensus 126 ~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~ 204 (229)
T 2pze_A 126 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHE 204 (229)
T ss_dssp TTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEET
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEEC
Confidence 356899999999999999999999999999999999999999999864 443 579999999999986 5999999999
Q ss_pred CEEEEEcCCHHHH
Q psy11936 365 QKLYYYKGNYSMF 377 (548)
Q Consensus 365 G~i~~~~g~y~~f 377 (548)
|+++.. |+.+.+
T Consensus 205 G~i~~~-g~~~~~ 216 (229)
T 2pze_A 205 GSSYFY-GTFSEL 216 (229)
T ss_dssp TEEEEE-ECHHHH
T ss_pred CEEEEE-CCHHHH
Confidence 999864 666554
No 40
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=7.4e-39 Score=317.77 Aligned_cols=195 Identities=23% Similarity=0.298 Sum_probs=143.0
Q ss_pred cEEEEeEEEEeC--CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee-ccCchhHHHH
Q psy11936 146 DIKVENFSISAK--GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV-VADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~--~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i-~~~~~~~~~~ 222 (548)
+|+++||+++|+ ++.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.-- ...+.
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~I~~~g~i~~v~Q~~----- 75 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE--MDKVEGHVAIKGSVAYVPQQA----- 75 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTC--SEEEEEEEEECSCEEEECSSC-----
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEEEEEcCCC-----
Confidence 489999999997 57899999999999999999999999999999999985 457778877655210 00000
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCC------h----hhhhcccCC
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFS------R----AMQDRATKN 292 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~------~----~~~~~~~~~ 292 (548)
..+..++.+++... .... ......++..+++. . ...++++.+
T Consensus 76 --------------------~~~~~tv~enl~~~------~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 127 (237)
T 2cbz_A 76 --------------------WIQNDSLRENILFG------CQLE--EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVN 127 (237)
T ss_dssp --------------------CCCSEEHHHHHHTT------SCCC--TTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBC
T ss_pred --------------------cCCCcCHHHHhhCc------cccC--HHHHHHHHHHHhhHHHHHhccccccccccCCCCC
Confidence 00112222222100 0000 01112222222221 1 123678899
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh---hc--CCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQ---GW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~---~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
|||||||||+|||||+.+|+||||||||++||+.++..+.+.|. .+ +.|||+||||++++. .||+|++|++|++
T Consensus 128 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l~~G~i 206 (237)
T 2cbz_A 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVMSGGKI 206 (237)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999884 32 579999999999985 6999999999999
Q ss_pred EEEcCCHHHH
Q psy11936 368 YYYKGNYSMF 377 (548)
Q Consensus 368 ~~~~g~y~~f 377 (548)
+.. |+.+.+
T Consensus 207 ~~~-g~~~~~ 215 (237)
T 2cbz_A 207 SEM-GSYQEL 215 (237)
T ss_dssp EEE-ECHHHH
T ss_pred EEe-CCHHHH
Confidence 864 676654
No 41
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=4.8e-39 Score=353.84 Aligned_cols=309 Identities=17% Similarity=0.202 Sum_probs=196.9
Q ss_pred eEEEEeCCceeeEeeeEEEE-CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH-hhH
Q psy11936 151 NFSISAKGNDLFVNANLLIA-NGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK-ADV 228 (548)
Q Consensus 151 nls~~y~~~~iL~~vsl~I~-~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~-~~~ 228 (548)
+++.+||.+. |+-..|.+. +|+++|||||||||||||||+|+|. ..|..|.|.... ........+. ...
T Consensus 4 ~~~~~~~~~~-f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl--~~p~~G~i~~~~------~~~~~~~~~~g~~i 74 (538)
T 3ozx_A 4 EVIHRYKVNG-FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGE--IIPNFGDPNSKV------GKDEVLKRFRGKEI 74 (538)
T ss_dssp CEEEESSTTS-CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTS--SCCCTTCTTSCC------CHHHHHHHHTTSTT
T ss_pred CCceecCCCc-eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCCcccccc------chhhHHhhcCCeeH
Confidence 5778897542 554455544 8999999999999999999999985 356666541100 0000000000 000
Q ss_pred HHHHHHHHHHH-----------Hh--hhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCH
Q psy11936 229 KRTELLAECAK-----------LE--AADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSG 295 (548)
Q Consensus 229 ~~~~l~~~~~~-----------~~--~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 295 (548)
..+...... .. ...+..++.+. +... ....++.++++.+|+. ...++++.+|||
T Consensus 75 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-------l~~~---~~~~~~~~~l~~l~l~-~~~~~~~~~LSg 141 (538)
T 3ozx_A 75 --YNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEI-------LTKI---DERGKKDEVKELLNMT-NLWNKDANILSG 141 (538)
T ss_dssp --HHHHHHHHTTCCCEEEECSCTTGGGTTCCSBHHHH-------HHHH---CCSSCHHHHHHHTTCG-GGTTSBGGGCCH
T ss_pred --HHHHHHHhhcccchhhccchhhhhhhhccCcHHHH-------hhcc---hhHHHHHHHHHHcCCc-hhhcCChhhCCH
Confidence 000000000 00 00011112111 1111 1123567899999997 467999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEE--EEc
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLY--YYK 371 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~--~~~ 371 (548)
||||||+|||||+.+|+|||||||||+||+.++.+|.++|+++ +.|||+||||++++..+||+|++|++|... .+.
T Consensus 142 Ge~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~~~~g~~~ 221 (538)
T 3ozx_A 142 GGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVS 221 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEETTTEEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCcccccccc
Confidence 9999999999999999999999999999999999999998876 689999999999999999999999865321 112
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccce
Q psy11936 372 GNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYV 451 (548)
Q Consensus 372 g~y~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~ 451 (548)
..+..- ..+....... ........... .
T Consensus 222 ~~~~~~-------------------~~~~~~~~g~------------------------~~~~~~~~r~~---------~ 249 (538)
T 3ozx_A 222 KSYAAR-------------------VGINNFLKGY------------------------LPAENMKIRPD---------E 249 (538)
T ss_dssp CCEEHH-------------------HHHHHHHHTE------------------------ETTTTEECSSS---------C
T ss_pred hhhhHH-------------------HHHHHHHhhh------------------------chhhhhhccch---------h
Confidence 222110 0000000000 00000000000 0
Q ss_pred eeeecCCC-----CCCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee
Q psy11936 452 VKFSFPDP-----PPLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG 521 (548)
Q Consensus 452 ~~~~f~~~-----~~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~ 521 (548)
..+....+ ...+.++++++++++.|++ ..|..+||+. .|+.+.|.||| |||+|+|+|.++|++|+|+.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 327 (538)
T 3ozx_A 250 IKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGD--FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTP 327 (538)
T ss_dssp CCCSCC----------CCEEEEECCEEEEETT--EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEES
T ss_pred hhccccccccccccccccceEEEcceEEEECC--EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 00000000 1235679999999999965 4677778774 89999999996 89999999999999999975
Q ss_pred ccceeeeeeecccee
Q psy11936 522 LHNVTFAYEGMKPLL 536 (548)
Q Consensus 522 ~~n~~~~y~~~~~~~ 536 (548)
.+..++|+.|++..
T Consensus 328 -~~~~i~~~~q~~~~ 341 (538)
T 3ozx_A 328 -EKQILSYKPQRIFP 341 (538)
T ss_dssp -SCCCEEEECSSCCC
T ss_pred -CCeeeEeechhccc
Confidence 46688999998643
No 42
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-38 Score=349.39 Aligned_cols=316 Identities=16% Similarity=0.193 Sum_probs=196.3
Q ss_pred eEEEEeCCc-eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH-HhhH
Q psy11936 151 NFSISAKGN-DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL-KADV 228 (548)
Q Consensus 151 nls~~y~~~-~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~-~~~~ 228 (548)
|++++|+.. ..|++++ ++.+|+++||+||||||||||||+|+|. ..|..|+|.... ........+ +...
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gl--l~P~~G~i~~~~------~~~~~~~~~~g~~~ 152 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGK--QKPNLGRFDDPP------EWQEIIKYFRGSEL 152 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTS--SCCCTTTTCCSS------CHHHHHHHTTTSTH
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcC--CCCCCceEeccc------chhhhhheecChhh
Confidence 568899765 4667766 6899999999999999999999999985 456666542100 011000000 0000
Q ss_pred HHHHHHHHHHHHhh--h---cCChhHHHH----HHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHH
Q psy11936 229 KRTELLAECAKLEA--A---DFSSEQQEQ----LKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRM 299 (548)
Q Consensus 229 ~~~~l~~~~~~~~~--~---~~~~~~~~~----l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkq 299 (548)
+ .+......... . .+....... ...+...+. ........++.++|+.+|+.. ..++++.+|||||||
T Consensus 153 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~-~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGe~Q 228 (608)
T 3j16_B 153 Q--NYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLK-LRMEKSPEDVKRYIKILQLEN-VLKRDIEKLSGGELQ 228 (608)
T ss_dssp H--HHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHH-HHCCSCHHHHHHHHHHHTCTG-GGGSCTTTCCHHHHH
T ss_pred h--hhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHh-hhhhhHHHHHHHHHHHcCCcc-hhCCChHHCCHHHHH
Confidence 0 01100000000 0 000000000 000111111 112234567899999999974 679999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEE--EcCCH
Q psy11936 300 RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY--YKGNY 374 (548)
Q Consensus 300 RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~--~~g~y 374 (548)
||+|||||+.+|+|||||||||+||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|...+ +..++
T Consensus 229 rv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~~~~~~~~~~ 308 (608)
T 3j16_B 229 RFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVYGVVTLPA 308 (608)
T ss_dssp HHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTTTEEEECCCE
T ss_pred HHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCccccceecCch
Confidence 999999999999999999999999999999999998876 5799999999999999999999998764321 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceeee
Q psy11936 375 SMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKF 454 (548)
Q Consensus 375 ~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~ 454 (548)
+. +. . + ..+. ........ .. . ......+
T Consensus 309 ~~----~~-----~----------~---~~~~----------------------~~~~~~~~----~~-~---~~~~~~~ 336 (608)
T 3j16_B 309 SV----RE-----G----------I---NIFL----------------------DGHIPAEN----LR-F---RTEALQF 336 (608)
T ss_dssp EH----HH-----H----------H---HHHH----------------------HTEETTTT----EE-C---SSSCCCC
T ss_pred hH----HH-----H----------H---HHhh----------------------ccccchhh----hc-c---ccccccc
Confidence 10 00 0 0 0000 00000000 00 0 0000111
Q ss_pred ecCCCCCCCCCcEEEEeeEEEeCCCCcccccCCccC-CC-----ceeEeecCc----cceeeccCCCCCCCCCCeeeccc
Q psy11936 455 SFPDPPPLQPPILGLHNVTFAYEGMKPLLMSKADED-QG-----PTELIQKPR----EYVVKFSFPDPPPLQPPILGLHN 524 (548)
Q Consensus 455 ~f~~~~~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g-----~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n 524 (548)
....+ .....+...+++++|++....+++++|+. .| +.+.|.||| |||+|+|+|.++|++|..+ .+
T Consensus 337 ~~~~~--~~~~~~~~~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~--~~ 412 (608)
T 3j16_B 337 RIADA--TEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI--PK 412 (608)
T ss_dssp CCSSS--SCCCCCCSSSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC--CS
T ss_pred ccccc--ccceeeeccceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc--cC
Confidence 11111 11122223678889976556889999863 44 788999996 8999999999999999864 35
Q ss_pred eeeeeeeccce
Q psy11936 525 VTFAYEGMKPL 535 (548)
Q Consensus 525 ~~~~y~~~~~~ 535 (548)
..++|+.|++.
T Consensus 413 ~~i~~~~q~~~ 423 (608)
T 3j16_B 413 LNVSMKPQKIA 423 (608)
T ss_dssp CCEEEECSSCC
T ss_pred CcEEEeccccc
Confidence 67899999854
No 43
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=6e-37 Score=340.71 Aligned_cols=213 Identities=21% Similarity=0.295 Sum_probs=162.2
Q ss_pred ccEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 145 VDIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 145 ~~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
..|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|. ..|.+|+|.++|+++...+...++.
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~--~~p~~G~i~~~g~~~~~~~~~~~~~ 417 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF--YDVDSGSICLDGHDVRDYKLTNLRR 417 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCCEEEECCEEhhhCCHHHHhc
Confidence 35999999999974 6799999999999999999999999999999999984 5788999999998764332221111
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhh----------hhcccCC
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAM----------QDRATKN 292 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~----------~~~~~~~ 292 (548)
..+++++.. ..+..++.+++.. . ......++++.++++.+|+.+.. .+....+
T Consensus 418 -------~i~~v~Q~~----~l~~~tv~eni~~-----~-~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~ 480 (582)
T 3b5x_A 418 -------HFALVSQNV----HLFNDTIANNIAY-----A-AEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTS 480 (582)
T ss_pred -------CeEEEcCCC----ccccccHHHHHhc-----c-CCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCc
Confidence 112222211 1123344444321 0 00122356677888888775321 2234579
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|||||||||+|||||+.+|++|||||||++||+.+...+.+.|.++ +.|+|+||||++.+. .||+|++|++|+++..
T Consensus 481 LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~ 559 (582)
T 3b5x_A 481 LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEIIER 559 (582)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998875 579999999999986 6999999999999864
Q ss_pred cCCHHHHH
Q psy11936 371 KGNYSMFK 378 (548)
Q Consensus 371 ~g~y~~f~ 378 (548)
|++++..
T Consensus 560 -g~~~~l~ 566 (582)
T 3b5x_A 560 -GRHADLL 566 (582)
T ss_pred -CCHHHHH
Confidence 7776653
No 44
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.5e-36 Score=337.57 Aligned_cols=211 Identities=22% Similarity=0.291 Sum_probs=163.4
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|. ..|.+|+|.++|+++...+...++.
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~--~~p~~G~i~~~g~~~~~~~~~~~~~- 417 (582)
T 3b60_A 341 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF--YDIDEGHILMDGHDLREYTLASLRN- 417 (582)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTT--TCCSEEEEEETTEETTTBCHHHHHH-
T ss_pred cEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc--cCCCCCeEEECCEEccccCHHHHHh-
Confidence 5999999999974 6799999999999999999999999999999999984 5788999999998875433222111
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhc-----------ccCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDR-----------ATKN 292 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~-----------~~~~ 292 (548)
..+++++. ...+..++.+++.. . ......++++.++++.+++.+ ..++ ...+
T Consensus 418 ------~i~~v~Q~----~~l~~~tv~eni~~-----~-~~~~~~~~~~~~~l~~~~l~~-~~~~~p~g~~~~~~~~~~~ 480 (582)
T 3b60_A 418 ------QVALVSQN----VHLFNDTVANNIAY-----A-RTEEYSREQIEEAARMAYAMD-FINKMDNGLDTIIGENGVL 480 (582)
T ss_dssp ------TEEEECSS----CCCCSSBHHHHHHT-----T-TTSCCCHHHHHHHHHTTTCHH-HHHHSTTGGGSBCCTTSCS
T ss_pred ------hCeEEccC----CcCCCCCHHHHHhc-----c-CCCCCCHHHHHHHHHHcCCHH-HHHhccccccccccCCCCC
Confidence 11111111 11233466555431 0 001234567888888888863 2233 4579
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|||||||||+|||||+.+|++|||||||++||+.+...+.+.|.++ +.|+|+||||++.+. .||+|++|++|+++..
T Consensus 481 LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~ 559 (582)
T 3b60_A 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVER 559 (582)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999988765 689999999999986 6999999999999865
Q ss_pred cCCHHHHH
Q psy11936 371 KGNYSMFK 378 (548)
Q Consensus 371 ~g~y~~f~ 378 (548)
|++++..
T Consensus 560 -g~~~~l~ 566 (582)
T 3b60_A 560 -GTHSELL 566 (582)
T ss_dssp -ECHHHHH
T ss_pred -cCHHHHH
Confidence 7776653
No 45
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.6e-36 Score=335.97 Aligned_cols=212 Identities=22% Similarity=0.280 Sum_probs=161.1
Q ss_pred cEEEEeEEEEeC--CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAK--GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~--~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+|+|+ +.++|+|+||+|++|+++||+||||||||||+++|+|. ..|.+|+|.++++++...+...++..
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~--~~~~~G~i~i~g~~i~~~~~~~~r~~ 418 (587)
T 3qf4_A 341 SVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRL--IDPERGRVEVDELDVRTVKLKDLRGH 418 (587)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTS--SCCSEEEEEESSSBGGGBCHHHHHHH
T ss_pred cEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--ccCCCcEEEECCEEcccCCHHHHHhh
Confidence 599999999994 46799999999999999999999999999999999974 57889999999988755443322211
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh----------hhhhcccCCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR----------AMQDRATKNF 293 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~----------~~~~~~~~~L 293 (548)
+ .+++|. ...+..++.+++.. ........++.+.++..++.+ ...++.+.+|
T Consensus 419 i-------~~v~Q~----~~lf~~tv~eni~~-------~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~L 480 (587)
T 3qf4_A 419 I-------SAVPQE----TVLFSGTIKENLKW-------GREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNF 480 (587)
T ss_dssp E-------EEECSS----CCCCSEEHHHHHTT-------TCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSS
T ss_pred e-------EEECCC----CcCcCccHHHHHhc-------cCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCc
Confidence 1 111111 11234455554421 111222344445555544432 1235667899
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
||||||||+|||||+.+|+||||||||++||+.+...+.+.|.++ ++|+|+||||++.+. .||+|++|++|+++..
T Consensus 481 SgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~~- 558 (587)
T 3qf4_A 481 SGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHEGKVAGF- 558 (587)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEETTEEEEE-
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEECCEEEEE-
Confidence 999999999999999999999999999999999999999988765 579999999999986 7999999999999875
Q ss_pred CCHHHHHH
Q psy11936 372 GNYSMFKK 379 (548)
Q Consensus 372 g~y~~f~~ 379 (548)
|++++..+
T Consensus 559 g~~~el~~ 566 (587)
T 3qf4_A 559 GTHKELLE 566 (587)
T ss_dssp ECHHHHHH
T ss_pred CCHHHHHh
Confidence 77776543
No 46
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=4.8e-36 Score=334.27 Aligned_cols=211 Identities=24% Similarity=0.323 Sum_probs=160.5
Q ss_pred EEEEeEEEEeCC---ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 147 IKVENFSISAKG---NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 147 I~l~nls~~y~~---~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
|+++||+++|++ .++|+|+||+|++|+++||+||||||||||+++|+|. ..|.+|+|.++|+++...+...++.
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~--~~p~~G~i~~~g~~i~~~~~~~~~~- 418 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRL--YDPASGTISLDGHDIRQLNPVWLRS- 418 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTS--SCCSEEEEEETTEETTTBCHHHHHH-
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--cCCCCcEEEECCEEhhhCCHHHHHh-
Confidence 999999999975 3699999999999999999999999999999999984 5788999999998875433221111
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcC-CCChHHHHHHHHHhCCCChhh------hh----cccCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG-ADSAEPRARRILAGLGFSRAM------QD----RATKN 292 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~~~~~~L~~lgl~~~~------~~----~~~~~ 292 (548)
...++++. ...+..++.+++.. .... ....++++.++++.+|+.+.. .+ ..+.+
T Consensus 419 ------~i~~v~Q~----~~l~~~tv~eni~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~ 483 (595)
T 2yl4_A 419 ------KIGTVSQE----PILFSCSIAENIAY-----GADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL 483 (595)
T ss_dssp ------SEEEECSS----CCCCSSBHHHHHHT-----TSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCC
T ss_pred ------ceEEEccC----CcccCCCHHHHHhh-----cCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCc
Confidence 11111111 11233466555421 0000 013456788889988875321 12 23489
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|||||||||+|||||+.+|++|||||||++||+.+...+.+.|.++ +.|+|+||||++.+. .||+|++|++|+++..
T Consensus 484 LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~ 562 (595)
T 2yl4_A 484 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIK-NANMVAVLDQGKITEY 562 (595)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHH-HSSEEEEEETTEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-cCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998765 689999999999986 5999999999999875
Q ss_pred cCCHHHH
Q psy11936 371 KGNYSMF 377 (548)
Q Consensus 371 ~g~y~~f 377 (548)
|++++.
T Consensus 563 -g~~~~l 568 (595)
T 2yl4_A 563 -GKHEEL 568 (595)
T ss_dssp -ECSCC-
T ss_pred -CCHHHH
Confidence 555543
No 47
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=3.4e-36 Score=334.46 Aligned_cols=211 Identities=21% Similarity=0.272 Sum_probs=161.0
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+|+|++ .++|+|+||+|++|+++||+||||||||||+++|+|. ..|.+|+|.++|.++...+...++..
T Consensus 339 ~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~--~~p~~G~i~~~g~~~~~~~~~~~r~~ 416 (578)
T 4a82_A 339 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF--YDVTSGQILIDGHNIKDFLTGSLRNQ 416 (578)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTS--SCCSEEEEEETTEEGGGSCHHHHHHT
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcC--CCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 5999999999964 5799999999999999999999999999999999984 57889999999988754433222111
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhh----------hhcccCCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAM----------QDRATKNF 293 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~----------~~~~~~~L 293 (548)
.+++++. ...+..++.+++.. ......+.++.++++..++.+.. .+....+|
T Consensus 417 -------i~~v~Q~----~~l~~~tv~eni~~-------~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~L 478 (578)
T 4a82_A 417 -------IGLVQQD----NILFSDTVKENILL-------GRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKL 478 (578)
T ss_dssp -------EEEECSS----CCCCSSBHHHHHGG-------GCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTS
T ss_pred -------eEEEeCC----CccCcccHHHHHhc-------CCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcC
Confidence 1111111 12234455555421 11223345566677766664221 23345689
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
||||||||+|||||+.+|++|||||||++||+.+...+.+.|..+ ++|+|+||||++.+.. ||+|++|++|+++..
T Consensus 479 SgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~- 556 (578)
T 4a82_A 479 SGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVIENGHIVET- 556 (578)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT-CSEEEEEETTEEEEE-
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEE-
Confidence 999999999999999999999999999999999999999988765 5799999999999865 999999999999875
Q ss_pred CCHHHHH
Q psy11936 372 GNYSMFK 378 (548)
Q Consensus 372 g~y~~f~ 378 (548)
|++++..
T Consensus 557 g~~~el~ 563 (578)
T 4a82_A 557 GTHRELI 563 (578)
T ss_dssp ECHHHHH
T ss_pred CCHHHHH
Confidence 7776653
No 48
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=7.5e-36 Score=304.65 Aligned_cols=187 Identities=27% Similarity=0.383 Sum_probs=127.6
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEec------eeeccCchhH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCE------QEVVADDLTA 219 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~------q~i~~~~~~~ 219 (548)
.|+++||++.+ +.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+ |+......
T Consensus 40 ~l~~~~l~~~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl--~~p~~G~I~~~g~i~~v~Q~~~l~~~-- 113 (290)
T 2bbs_A 40 SLSFSNFSLLG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE--LEPSEGKIKHSGRISFCSQNSWIMPG-- 113 (290)
T ss_dssp ----------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTS--SCEEEEEEECCSCEEEECSSCCCCSS--
T ss_pred eEEEEEEEEcC--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCcEEEECCEEEEEeCCCccCcc--
Confidence 48899999863 6799999999999999999999999999999999985 456778776554 32211111
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh----------hhhcc
Q psy11936 220 VESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA----------MQDRA 289 (548)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~~~~~ 289 (548)
++.+++. +......++..++..+++... ..+++
T Consensus 114 ----------------------------tv~enl~---------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 156 (290)
T 2bbs_A 114 ----------------------------TIKENII---------GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 156 (290)
T ss_dssp ----------------------------BHHHHHH---------TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC---
T ss_pred ----------------------------cHHHHhh---------CcccchHHHHHHHHHhChHHHHHhccccccchhcCc
Confidence 2222111 000001112223333333211 12334
Q ss_pred cCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH-hhc--CCeEEEEecCHHHHHhhcCEEEEEeCCE
Q psy11936 290 TKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYL-QGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQK 366 (548)
Q Consensus 290 ~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L-~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~ 366 (548)
+.+|||||||||+|||||+.+|+||||||||++||+.++..+.+++ ..+ +.|||+||||++++. .||+|++|++|+
T Consensus 157 ~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~ 235 (290)
T 2bbs_A 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGS 235 (290)
T ss_dssp -CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTE
T ss_pred cCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCe
Confidence 6899999999999999999999999999999999999999999864 333 579999999999986 599999999999
Q ss_pred EEEEcCCHHHH
Q psy11936 367 LYYYKGNYSMF 377 (548)
Q Consensus 367 i~~~~g~y~~f 377 (548)
++.. |+.+++
T Consensus 236 i~~~-g~~~~l 245 (290)
T 2bbs_A 236 SYFY-GTFSEL 245 (290)
T ss_dssp EEEE-ECHHHH
T ss_pred EEEe-CCHHHH
Confidence 9864 666654
No 49
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.7e-36 Score=338.15 Aligned_cols=210 Identities=20% Similarity=0.270 Sum_probs=161.2
Q ss_pred cEEEEeEEEEeCC-ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAKG-NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~-~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.|+++||+|+|++ .++|+|+||+|++|+++||+||||||||||+++|+|. ..|.+|+|.++|+++...+...++..
T Consensus 354 ~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~--~~p~~G~i~~~g~~i~~~~~~~~r~~- 430 (598)
T 3qf4_B 354 EIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF--YDVDRGQILVDGIDIRKIKRSSLRSS- 430 (598)
T ss_dssp CEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTS--SCCSEEEEEETTEEGGGSCHHHHHHH-
T ss_pred eEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--cCCCCeEEEECCEEhhhCCHHHHHhc-
Confidence 5999999999964 6799999999999999999999999999999999984 57889999999998765443322211
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhc-----------ccCCC
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDR-----------ATKNF 293 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~-----------~~~~L 293 (548)
.++++|. ...+..++.+++.. ......+.++.++++.+++.+ ..++ ...+|
T Consensus 431 ------i~~v~Q~----~~lf~~tv~eni~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~t~~~~~g~~L 492 (598)
T 3qf4_B 431 ------IGIVLQD----TILFSTTVKENLKY-------GNPGATDEEIKEAAKLTHSDH-FIKHLPEGYETVLTDNGEDL 492 (598)
T ss_dssp ------EEEECTT----CCCCSSBHHHHHHS-------SSTTCCTTHHHHHTTTTTCHH-HHHTSTTGGGCBCHHHHTTS
T ss_pred ------eEEEeCC----CccccccHHHHHhc-------CCCCCCHHHHHHHHHHhCCHH-HHHhccccccchhcCCCCCC
Confidence 1111111 12234466555421 111122344566666666642 2222 34789
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
||||||||+|||||+.+|++|||||||++||+.+...+.+.|.++ +.|+|+||||++.+.. ||+|++|++|+++. .
T Consensus 493 SgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~-~ 570 (598)
T 3qf4_B 493 SQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVE-M 570 (598)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSEEE-C
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-E
Confidence 999999999999999999999999999999999999999888765 6899999999999865 99999999999986 4
Q ss_pred CCHHHHH
Q psy11936 372 GNYSMFK 378 (548)
Q Consensus 372 g~y~~f~ 378 (548)
|++++..
T Consensus 571 g~~~~l~ 577 (598)
T 3qf4_B 571 GKHDELI 577 (598)
T ss_dssp SCHHHHH
T ss_pred CCHHHHH
Confidence 7877654
No 50
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1.7e-35 Score=341.63 Aligned_cols=228 Identities=21% Similarity=0.334 Sum_probs=157.4
Q ss_pred ccEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEece-eeccC------
Q psy11936 145 VDIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQ-EVVAD------ 215 (548)
Q Consensus 145 ~~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q-~i~~~------ 215 (548)
.+|+++||+++|++ +++|+|+||+|.+|+++||+||||||||||||+|+|. ..|.+|.|.+.+. .+...
T Consensus 670 ~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGl--l~P~sG~I~~~~~~~I~yv~Q~~~~ 747 (986)
T 2iw3_A 670 AIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGE--LLPTSGEVYTHENCRIAYIKQHAFA 747 (986)
T ss_dssp EEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTS--SCCSEEEEEECTTCCEEEECHHHHH
T ss_pred ceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEEcCccceEeeccchhh
Confidence 36999999999975 6799999999999999999999999999999999985 4677888877542 11000
Q ss_pred ------chhHHHHHHHhhHHHH----HHHHH---HH--------------------------------------------
Q psy11936 216 ------DLTAVESVLKADVKRT----ELLAE---CA-------------------------------------------- 238 (548)
Q Consensus 216 ------~~~~~~~~~~~~~~~~----~l~~~---~~-------------------------------------------- 238 (548)
+.+..+ .+...++.. .+... ..
T Consensus 748 ~l~~~~~~t~~e-~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~EN 826 (986)
T 2iw3_A 748 HIESHLDKTPSE-YIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGEN 826 (986)
T ss_dssp HGGGCTTSCHHH-HHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEES
T ss_pred hhhcccccCHHH-HHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhh
Confidence 000000 000000000 00000 00
Q ss_pred ------------HHhhhcCCh-hHHHHHHHHHHHH------H-hcCCCChHHHHHHHHHhCCCChhh-hhcccCCCCHHH
Q psy11936 239 ------------KLEAADFSS-EQQEQLKEIYEEL------K-AIGADSAEPRARRILAGLGFSRAM-QDRATKNFSGGW 297 (548)
Q Consensus 239 ------------~~~~~~~~~-~~~~~l~~~~~~l------~-~~~~~~~~~~~~~~L~~lgl~~~~-~~~~~~~LSGGq 297 (548)
...+..... .....+......+ . .........++.++|+.+||.... .++++.+|||||
T Consensus 827 i~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQ 906 (986)
T 2iw3_A 827 IGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQ 906 (986)
T ss_dssp TTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCHHH
T ss_pred hhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCHHH
Confidence 000000000 0000000000001 0 111223457789999999998544 688999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHH
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~ 375 (548)
||||+|||||+.+|+||||||||||||+.+..+|.+.|+++++|||+||||++++..+||+|++|++|+++..+.+|.
T Consensus 907 kQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~G~~~~ 984 (986)
T 2iw3_A 907 KVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGHNWV 984 (986)
T ss_dssp HHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTTBCCC------
T ss_pred HHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987665553
No 51
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1e-34 Score=319.77 Aligned_cols=192 Identities=26% Similarity=0.326 Sum_probs=149.9
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeE------EEEeceeeccCchh
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNID------ILYCEQEVVADDLT 218 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~------I~~~~q~i~~~~~~ 218 (548)
..|+++|+++.|++ ..|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+ |+|..|+.....
T Consensus 286 ~~l~~~~l~~~~~~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl--~~p~~G~i~~~~~i~~v~Q~~~~~~-- 360 (538)
T 1yqt_A 286 TLVTYPRLVKDYGS-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGV--EEPTEGKIEWDLTVAYKPQYIKADY-- 360 (538)
T ss_dssp EEEEECCEEEEETT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTS--SCCSBCCCCCCCCEEEECSSCCCCC--
T ss_pred eEEEEeeEEEEECC-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCeEEEECceEEEEecCCcCCC--
Confidence 46999999999987 479999999999999999999999999999999985 3455554 455555432210
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHH
Q psy11936 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWR 298 (548)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqk 298 (548)
..++.+.+..... ... ....++.++|+.+|+. ...++++.+||||||
T Consensus 361 ---------------------------~~tv~~~~~~~~~--~~~---~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGe~ 407 (538)
T 1yqt_A 361 ---------------------------EGTVYELLSKIDA--SKL---NSNFYKTELLKPLGII-DLYDREVNELSGGEL 407 (538)
T ss_dssp ---------------------------SSBHHHHHHHHHH--HHH---TCHHHHHHTTTTTTCG-GGTTSBGGGCCHHHH
T ss_pred ---------------------------CCcHHHHHHhhhc--cCC---CHHHHHHHHHHHcCCh-hhhcCChhhCCHHHH
Confidence 1111111110000 000 1234677889999997 567999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeC--CEEEEEcC
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQ--QKLYYYKG 372 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~--G~i~~~~g 372 (548)
|||+|||||+.+|+||||||||||||+.++..|.++|.++ +.|||+||||++++..+||+|++|++ |.+... |
T Consensus 408 qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~-g 486 (538)
T 1yqt_A 408 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRA-L 486 (538)
T ss_dssp HHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEE-C
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeec-C
Confidence 9999999999999999999999999999999999988754 68999999999999999999999986 677655 4
Q ss_pred CHH
Q psy11936 373 NYS 375 (548)
Q Consensus 373 ~y~ 375 (548)
+.+
T Consensus 487 ~~~ 489 (538)
T 1yqt_A 487 PPM 489 (538)
T ss_dssp CCE
T ss_pred CHH
Confidence 443
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=2.3e-34 Score=320.70 Aligned_cols=191 Identities=26% Similarity=0.339 Sum_probs=149.6
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeE------EEEeceeeccCchh
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNID------ILYCEQEVVADDLT 218 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~------I~~~~q~i~~~~~~ 218 (548)
..|+++|+++.|++. .|+++||+|.+|+++||+|||||||||||++|+|.. .|.+|+ |+|..|+.....
T Consensus 356 ~~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~--~p~~G~I~~~~~i~~v~Q~~~~~~-- 430 (607)
T 3bk7_A 356 TLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVE--EPTEGKVEWDLTVAYKPQYIKAEY-- 430 (607)
T ss_dssp EEEEECCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSS--CCSBSCCCCCCCEEEECSSCCCCC--
T ss_pred eEEEEeceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCC--CCCceEEEEeeEEEEEecCccCCC--
Confidence 469999999999874 789999999999999999999999999999999853 455554 455555432211
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHH-HHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHH
Q psy11936 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEI-YEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGW 297 (548)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~-~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 297 (548)
..++.+++... ...+ ....++.++|+.+|+. ...++++.+|||||
T Consensus 431 ---------------------------~~tv~e~~~~~~~~~~------~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGe 476 (607)
T 3bk7_A 431 ---------------------------EGTVYELLSKIDSSKL------NSNFYKTELLKPLGII-DLYDRNVEDLSGGE 476 (607)
T ss_dssp ---------------------------SSBHHHHHHHHHHHHH------HCHHHHHHTHHHHTCT-TTTTSBGGGCCHHH
T ss_pred ---------------------------CCcHHHHHHhhhccCC------CHHHHHHHHHHHcCCc-hHhcCChhhCCHHH
Confidence 11111111100 0000 0134567889999997 46799999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeC--CEEEEEc
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQ--QKLYYYK 371 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~--G~i~~~~ 371 (548)
||||+|||||+.+|+||||||||||||+.++..+.++|+++ +.|||+||||++++..+||+|++|++ |.+...
T Consensus 477 ~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~- 555 (607)
T 3bk7_A 477 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRA- 555 (607)
T ss_dssp HHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEE-
T ss_pred HHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEec-
Confidence 99999999999999999999999999999999999988764 68999999999999999999999986 776655
Q ss_pred CCHH
Q psy11936 372 GNYS 375 (548)
Q Consensus 372 g~y~ 375 (548)
|+.+
T Consensus 556 g~p~ 559 (607)
T 3bk7_A 556 LPPM 559 (607)
T ss_dssp CCCE
T ss_pred CCHH
Confidence 4433
No 53
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=4.7e-35 Score=322.14 Aligned_cols=196 Identities=20% Similarity=0.242 Sum_probs=149.0
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
..++++|+++.|++ ..|..+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+..+.......
T Consensus 268 ~~l~~~~l~~~~~~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~~~~i~~~~q~~----- 339 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGE--ITADEGSVTPEKQILSYKPQRI----- 339 (538)
T ss_dssp EEEEECCEEEEETT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTS--SCCSBCCEESSCCCEEEECSSC-----
T ss_pred ceEEEcceEEEECC-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCeeeEeechhc-----
Confidence 46899999999987 468888999999999999999999999999999985 4677787765544332110000
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
...+..++.+++.. ............+.++|+.+|+. ...++++.+|||||||||+||
T Consensus 340 -----------------~~~~~~tv~~~l~~----~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGq~QRv~iA 397 (538)
T 3ozx_A 340 -----------------FPNYDGTVQQYLEN----ASKDALSTSSWFFEEVTKRLNLH-RLLESNVNDLSGGELQKLYIA 397 (538)
T ss_dssp -----------------CCCCSSBHHHHHHH----HCSSTTCTTSHHHHHTTTTTTGG-GCTTSBGGGCCHHHHHHHHHH
T ss_pred -----------------ccccCCCHHHHHHH----hhhhccchhHHHHHHHHHHcCCH-HHhcCChhhCCHHHHHHHHHH
Confidence 00011222222211 00000012234567889999997 467999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeC--CEEEEE
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQ--QKLYYY 370 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~--G~i~~~ 370 (548)
|||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+||||++|++ |.+...
T Consensus 398 raL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~ 469 (538)
T 3ozx_A 398 ATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLA 469 (538)
T ss_dssp HHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEE
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccC
Confidence 9999999999999999999999999988888754 67999999999999999999999986 444433
No 54
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=5.4e-35 Score=330.00 Aligned_cols=102 Identities=25% Similarity=0.307 Sum_probs=90.2
Q ss_pred HHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecC
Q psy11936 274 RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPT--LLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHD 348 (548)
Q Consensus 274 ~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~--lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD 348 (548)
.+|+.+||.....++++.+|||||||||+|||||+.+|+ ||||||||||||+.++.+|.++|+++ +.|||+||||
T Consensus 184 ~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 184 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp HHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 468899997545689999999999999999999999998 99999999999999999999988765 5899999999
Q ss_pred HHHHHhhcCEEEEE------eCCEEEEEcCCHHHH
Q psy11936 349 QSFLDNVCNEIIHL------DQQKLYYYKGNYSMF 377 (548)
Q Consensus 349 ~~~l~~vadrIi~L------~~G~i~~~~g~y~~f 377 (548)
++++. .||+|++| ++|+++.. |+.+++
T Consensus 264 ~~~~~-~~d~ii~l~~g~~~~~G~i~~~-g~~~~~ 296 (670)
T 3ux8_A 264 EDTML-AADYLIDIGPGAGIHGGEVVAA-GTPEEV 296 (670)
T ss_dssp HHHHH-HCSEEEEECSSSGGGCCSEEEE-ECHHHH
T ss_pred HHHHh-hCCEEEEecccccccCCEEEEe-cCHHHH
Confidence 99876 59999999 89999864 666543
No 55
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=3.4e-34 Score=344.25 Aligned_cols=213 Identities=18% Similarity=0.281 Sum_probs=165.4
Q ss_pred cEEEEeEEEEeCC---ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKG---NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~---~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
.|+++||+|+|++ .++|+|+||+|++|+++||||+||||||||+++|.| +..|.+|+|.++|.++...+...++.
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r--l~~p~~G~I~iDG~di~~i~~~~lR~ 1153 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLER--FYDTLGGEIFIDGSEIKTLNPEHTRS 1153 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTT--SSCCSSSEEEETTEETTTBCHHHHHT
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhc--CccCCCCEEEECCEEhhhCCHHHHHh
Confidence 5999999999964 369999999999999999999999999999999997 46789999999999987655444332
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcC-CCChHHHHHHHHHhCCCChhh------hhc----ccC
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG-ADSAEPRARRILAGLGFSRAM------QDR----ATK 291 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~~~~~~L~~lgl~~~~------~~~----~~~ 291 (548)
.+ .+++| +...|..+..+|+.. +.. ....++.+.++++..++.+.. .+. ...
T Consensus 1154 ~i-------~~V~Q----dp~LF~gTIreNI~~------gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~ 1216 (1321)
T 4f4c_A 1154 QI-------AIVSQ----EPTLFDCSIAENIIY------GLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGT 1216 (1321)
T ss_dssp TE-------EEECS----SCCCCSEEHHHHHSS------SSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSC
T ss_pred he-------EEECC----CCEeeCccHHHHHhc------cCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCc
Confidence 21 11111 122355566655420 011 122455677777777664221 122 335
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 292 ~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
+||||||||++|||||+.+|+|||||||||+||+++...+.+.|++. ++|+|+|+|.++.+.. ||+|++|++|+|++
T Consensus 1217 ~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~-aD~I~Vld~G~IvE 1295 (1321)
T 4f4c_A 1217 QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMN-ADCIAVVSNGTIIE 1295 (1321)
T ss_dssp SSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTT-CSEEEEESSSSEEE
T ss_pred ccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHh-CCEEEEEECCEEEE
Confidence 79999999999999999999999999999999999999999999875 5799999999999865 99999999999998
Q ss_pred EcCCHHHHHH
Q psy11936 370 YKGNYSMFKK 379 (548)
Q Consensus 370 ~~g~y~~f~~ 379 (548)
+ |++++..+
T Consensus 1296 ~-Gth~eLl~ 1304 (1321)
T 4f4c_A 1296 K-GTHTQLMS 1304 (1321)
T ss_dssp E-ECHHHHHH
T ss_pred E-CCHHHHHh
Confidence 7 77776543
No 56
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-33 Score=313.91 Aligned_cols=191 Identities=23% Similarity=0.278 Sum_probs=146.2
Q ss_pred EeEEEEeCC-ceeeEeeeEEEECC-----cEEEEECCCCCcHHHHHHHHHcCCCCCCCCeE------EEEeceeeccCch
Q psy11936 150 ENFSISAKG-NDLFVNANLLIANG-----RRYGLVGPNGHGKTTLLRHIASRDLKVPPNID------ILYCEQEVVADDL 217 (548)
Q Consensus 150 ~nls~~y~~-~~iL~~vsl~I~~G-----e~igLvGpNGsGKSTLLklLaG~~~~~~~~g~------I~~~~q~i~~~~~ 217 (548)
.+++++|++ ..+++++||++.+| |++||+|||||||||||++|+|.. .|.+|. +.|..|.+....
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~--~p~~G~~~~~~~i~~~~q~~~~~~- 426 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGAL--KPDEGQDIPKLNVSMKPQKIAPKF- 426 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSS--CCSBCCCCCSCCEEEECSSCCCCC-
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCC--CCCCCcCccCCcEEEecccccccC-
Confidence 567788876 45899999999999 789999999999999999999853 455553 566665432110
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHH
Q psy11936 218 TAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGW 297 (548)
Q Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 297 (548)
..++.+++. . ...+.......+.++|+.+|+.. ..++++.+|||||
T Consensus 427 ----------------------------~~tv~e~~~---~--~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~LSGGq 472 (608)
T 3j16_B 427 ----------------------------PGTVRQLFF---K--KIRGQFLNPQFQTDVVKPLRIDD-IIDQEVQHLSGGE 472 (608)
T ss_dssp ----------------------------CSBHHHHHH---H--HCSSTTTSHHHHHHTHHHHTSTT-TSSSBSSSCCHHH
T ss_pred ----------------------------CccHHHHHH---H--HhhcccccHHHHHHHHHHcCChh-hhcCChhhCCHHH
Confidence 011111100 0 00011122345667899999974 6799999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeC--CEEEEEc
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQ--QKLYYYK 371 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~--G~i~~~~ 371 (548)
||||+|||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+||||++|++ |++...+
T Consensus 473 kQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g 552 (608)
T 3j16_B 473 LQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHAR 552 (608)
T ss_dssp HHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECC
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecC
Confidence 99999999999999999999999999999999888887654 68999999999999999999999986 8887765
Q ss_pred CCHHHH
Q psy11936 372 GNYSMF 377 (548)
Q Consensus 372 g~y~~f 377 (548)
.+.+.+
T Consensus 553 ~p~~~~ 558 (608)
T 3j16_B 553 APESLL 558 (608)
T ss_dssp CCEEHH
T ss_pred ChHHHh
Confidence 554443
No 57
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=9.8e-34 Score=339.45 Aligned_cols=214 Identities=18% Similarity=0.253 Sum_probs=157.8
Q ss_pred ccEEEEeEEEEeCCc---eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 145 VDIKVENFSISAKGN---DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 145 ~~I~l~nls~~y~~~---~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
..|+++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|. ..|.+|+|.++|.++...+...++
T Consensus 1029 g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~--~~p~~G~I~i~g~~i~~~~~~~~r 1106 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERF--YDPMAGSVFLDGKEIKQLNVQWLR 1106 (1284)
T ss_dssp CCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTS--SCCSEEEEESSSSCTTSSCHHHHT
T ss_pred CcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC--cCCCCCEEEECCEEcccCCHHHHH
Confidence 359999999999753 699999999999999999999999999999999974 578899999999887544332211
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh----------hhhcccC
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA----------MQDRATK 291 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~~~~~~~ 291 (548)
. ...+++|. ...+..++.+++.. ...........+.+.++..++.+. .......
T Consensus 1107 ~-------~i~~v~Q~----~~l~~~ti~eNi~~-----~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~ 1170 (1284)
T 3g5u_A 1107 A-------QLGIVSQE----PILFDCSIAENIAY-----GDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGT 1170 (1284)
T ss_dssp T-------SCEEEESS----CCCCSSBHHHHHTC-----CCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSC
T ss_pred h-------ceEEECCC----CccccccHHHHHhc-----cCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCC
Confidence 1 11111111 11234455444310 000011223344445554444321 1122346
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 292 ~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|... ++|||+||||++++.. ||+|++|++|++++
T Consensus 1171 ~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~-~dri~vl~~G~i~~ 1249 (1284)
T 3g5u_A 1171 QLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQN-ADLIVVIQNGKVKE 1249 (1284)
T ss_dssp SSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGS-CSEEEEEETBEEEE
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE
Confidence 89999999999999999999999999999999999999999999765 5799999999999865 99999999999997
Q ss_pred EcCCHHHHH
Q psy11936 370 YKGNYSMFK 378 (548)
Q Consensus 370 ~~g~y~~f~ 378 (548)
+ |+++++.
T Consensus 1250 ~-g~~~~l~ 1257 (1284)
T 3g5u_A 1250 H-GTHQQLL 1257 (1284)
T ss_dssp E-ECHHHHH
T ss_pred E-CCHHHHH
Confidence 6 7777654
No 58
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.1e-32 Score=331.05 Aligned_cols=210 Identities=23% Similarity=0.295 Sum_probs=164.8
Q ss_pred cEEEEeEEEEeCC---ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKG---NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~---~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
.|+++||+|+|++ .++|+|+||+|++|+.+|||||||||||||+++|.|. ..|.+|.|.++|.++...+...++.
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~--~~~~~G~I~idG~~i~~~~~~~lr~ 492 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRY--YDVLKGKITIDGVDVRDINLEFLRK 492 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTS--SCCSEEEEEETTEETTTSCHHHHHH
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccc--cccccCcccCCCccchhccHHHHhh
Confidence 5999999999963 5799999999999999999999999999999999974 6889999999999887655444332
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcC-CCChHHHHHHHHHhCCCChhh----------hhcccC
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG-ADSAEPRARRILAGLGFSRAM----------QDRATK 291 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~~~~~~L~~lgl~~~~----------~~~~~~ 291 (548)
.+.. +.| +...++.+..+|+. ++ .+..++++.++++..++.+.. ......
T Consensus 493 ~i~~-------v~Q----~~~Lf~~TI~eNI~--------~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~ 553 (1321)
T 4f4c_A 493 NVAV-------VSQ----EPALFNCTIEENIS--------LGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGT 553 (1321)
T ss_dssp HEEE-------ECS----SCCCCSEEHHHHHH--------TTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSC
T ss_pred cccc-------cCC----cceeeCCchhHHHh--------hhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCC
Confidence 2211 111 12335666666652 12 223456677777776654221 223446
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 292 ~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
+|||||||||+|||||+.+|+|||||||||+||..+...+.+.|.++ ++|+|+|||++..+. .||+|++|++|+|++
T Consensus 554 ~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~-~aD~Iivl~~G~ive 632 (1321)
T 4f4c_A 554 QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIR-NADLIISCKNGQVVE 632 (1321)
T ss_dssp CCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTT-TCSEEEEEETTEEEE
T ss_pred CCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHH-hCCEEEEeeCCeeec
Confidence 79999999999999999999999999999999999988888888765 689999999999985 599999999999997
Q ss_pred EcCCHHHHH
Q psy11936 370 YKGNYSMFK 378 (548)
Q Consensus 370 ~~g~y~~f~ 378 (548)
. |++++..
T Consensus 633 ~-Gth~eL~ 640 (1321)
T 4f4c_A 633 V-GDHRALM 640 (1321)
T ss_dssp E-ECHHHHH
T ss_pred c-CCHHHHH
Confidence 5 7777643
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.97 E-value=1e-30 Score=295.13 Aligned_cols=107 Identities=25% Similarity=0.356 Sum_probs=92.6
Q ss_pred HHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCC---EEEEeCCCCCCCHHHHHHHHHHHhhc---CCeE
Q psy11936 269 EPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPT---LLLLDEPTNHLDLNAVIWLDNYLQGW---KKTL 342 (548)
Q Consensus 269 ~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~---lLLLDEPTn~LD~~s~~~L~~~L~~~---~~Tv 342 (548)
..++.+.|..+|+.....++++.+|||||||||+|||||+.+|+ ||||||||++||+.+...+.++|+++ +.||
T Consensus 520 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tv 599 (670)
T 3ux8_A 520 IKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTV 599 (670)
T ss_dssp HHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 34567788999997545688999999999999999999998874 99999999999999999988888765 6799
Q ss_pred EEEecCHHHHHhhcCEEEEE------eCCEEEEEcCCHHHH
Q psy11936 343 LIVSHDQSFLDNVCNEIIHL------DQQKLYYYKGNYSMF 377 (548)
Q Consensus 343 IiVSHD~~~l~~vadrIi~L------~~G~i~~~~g~y~~f 377 (548)
|+||||++++. .||+|++| ++|+|+.. |+.++.
T Consensus 600 i~vtHd~~~~~-~~d~i~~l~~~~g~~~G~i~~~-g~~~~~ 638 (670)
T 3ux8_A 600 LVIEHNLDVIK-TADYIIDLGPEGGDRGGQIVAV-GTPEEV 638 (670)
T ss_dssp EEECCCHHHHT-TCSEEEEEESSSGGGCCEEEEE-ECHHHH
T ss_pred EEEeCCHHHHH-hCCEEEEecCCcCCCCCEEEEe-cCHHHH
Confidence 99999999884 69999999 89999865 666554
No 60
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.96 E-value=3e-29 Score=287.01 Aligned_cols=108 Identities=25% Similarity=0.307 Sum_probs=94.7
Q ss_pred HHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeE
Q psy11936 269 EPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIE---PTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTL 342 (548)
Q Consensus 269 ~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~---P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~Tv 342 (548)
..++.++|..+||.....++++.+|||||+|||+||++|+.+ |+||||||||+|||+.++..|.++|..+ +.||
T Consensus 707 ~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tV 786 (842)
T 2vf7_A 707 IFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTV 786 (842)
T ss_dssp HHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 356788999999975446889999999999999999999996 7999999999999999999998887654 6899
Q ss_pred EEEecCHHHHHhhcCEEEEE------eCCEEEEEcCCHHHHH
Q psy11936 343 LIVSHDQSFLDNVCNEIIHL------DQQKLYYYKGNYSMFK 378 (548)
Q Consensus 343 IiVSHD~~~l~~vadrIi~L------~~G~i~~~~g~y~~f~ 378 (548)
|+||||++++ .+||+|++| ++|+|+. .|+.+++.
T Consensus 787 IvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~-~g~~~el~ 826 (842)
T 2vf7_A 787 IAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVA-QGTPAEVA 826 (842)
T ss_dssp EEECCCHHHH-TTCSEEEEECSSSGGGCCSEEE-EECHHHHT
T ss_pred EEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEE-EcCHHHHH
Confidence 9999999999 689999999 6899986 47776653
No 61
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.96 E-value=2.5e-29 Score=266.97 Aligned_cols=77 Identities=19% Similarity=0.203 Sum_probs=72.4
Q ss_pred CCHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEE----eC
Q psy11936 293 FSGGWRMRVSLARALYIEP--TLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHL----DQ 364 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P--~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L----~~ 364 (548)
|||||||||+||++|+.+| +||||||||||||+.++.+|.++|+++ ++|||+||||++++ .+||++++| ++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~~~d~i~~l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-ARAHHHYKVEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEEEEEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-hhcCeEEEEEEeccC
Confidence 6999999999999999999 999999999999999999999999987 48999999999887 479999999 99
Q ss_pred CEEEEE
Q psy11936 365 QKLYYY 370 (548)
Q Consensus 365 G~i~~~ 370 (548)
|+++..
T Consensus 375 G~~~~~ 380 (415)
T 4aby_A 375 GRTVSH 380 (415)
T ss_dssp TEEEEE
T ss_pred CceEEE
Confidence 998764
No 62
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.95 E-value=1e-27 Score=275.14 Aligned_cols=107 Identities=26% Similarity=0.370 Sum_probs=92.8
Q ss_pred HHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEE
Q psy11936 270 PRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEP---TLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLL 343 (548)
Q Consensus 270 ~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P---~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvI 343 (548)
.++.++|..+||.....++++.+|||||+|||+||++|+.+| +||||||||+|||+.++..|.++|..+ +.|||
T Consensus 823 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVI 902 (972)
T 2r6f_A 823 KRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVL 902 (972)
T ss_dssp HHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 356789999999754568999999999999999999999865 999999999999999999999888754 68999
Q ss_pred EEecCHHHHHhhcCEEEEE------eCCEEEEEcCCHHHHH
Q psy11936 344 IVSHDQSFLDNVCNEIIHL------DQQKLYYYKGNYSMFK 378 (548)
Q Consensus 344 iVSHD~~~l~~vadrIi~L------~~G~i~~~~g~y~~f~ 378 (548)
+||||++++ .+||+|++| ++|+++.. |+.+.+.
T Consensus 903 visHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~-g~~~el~ 941 (972)
T 2r6f_A 903 VIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAV-GTPEEVA 941 (972)
T ss_dssp EECCCHHHH-TTCSEEEEECSSSTTSCCSEEEE-ESHHHHH
T ss_pred EEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEe-cCHHHHH
Confidence 999999998 579999999 68999864 6666543
No 63
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.95 E-value=1.1e-27 Score=276.07 Aligned_cols=107 Identities=26% Similarity=0.380 Sum_probs=93.9
Q ss_pred HHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeE
Q psy11936 269 EPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEP---TLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTL 342 (548)
Q Consensus 269 ~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P---~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~Tv 342 (548)
..++.++|..+||.....++++.+|||||+|||+|||||+.+| +||||||||+|||+.++..|.++|.++ +.||
T Consensus 782 ~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TV 861 (916)
T 3pih_A 782 IKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTV 861 (916)
T ss_dssp HHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEE
Confidence 4567789999999755568899999999999999999999875 799999999999999999999988764 6899
Q ss_pred EEEecCHHHHHhhcCEEEEE------eCCEEEEEcCCHHHH
Q psy11936 343 LIVSHDQSFLDNVCNEIIHL------DQQKLYYYKGNYSMF 377 (548)
Q Consensus 343 IiVSHD~~~l~~vadrIi~L------~~G~i~~~~g~y~~f 377 (548)
|+||||++++.. ||+|++| ++|+|+.. |+.++.
T Consensus 862 IvI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv~~-Gtpeel 900 (916)
T 3pih_A 862 IVIEHNLDVIKN-ADHIIDLGPEGGKEGGYIVAT-GTPEEI 900 (916)
T ss_dssp EEECCCHHHHTT-CSEEEEEESSSGGGCCEEEEE-ESHHHH
T ss_pred EEEeCCHHHHHh-CCEEEEecCCCCCCCCEEEEE-cCHHHH
Confidence 999999999865 9999999 89999875 666554
No 64
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.95 E-value=1.7e-27 Score=274.29 Aligned_cols=107 Identities=26% Similarity=0.382 Sum_probs=92.7
Q ss_pred HHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEE
Q psy11936 270 PRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEP---TLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLL 343 (548)
Q Consensus 270 ~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P---~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvI 343 (548)
.++.++|..+||.....++++.+|||||+|||+||++|+.+| +||||||||+|||+.++..|.++|.++ +.|||
T Consensus 841 ~~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVI 920 (993)
T 2ygr_A 841 HRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVI 920 (993)
T ss_dssp HHHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 345689999999753568899999999999999999999865 999999999999999999999888654 68999
Q ss_pred EEecCHHHHHhhcCEEEEE------eCCEEEEEcCCHHHHH
Q psy11936 344 IVSHDQSFLDNVCNEIIHL------DQQKLYYYKGNYSMFK 378 (548)
Q Consensus 344 iVSHD~~~l~~vadrIi~L------~~G~i~~~~g~y~~f~ 378 (548)
+||||++++ .+||+|++| ++|+++. .|+.+++.
T Consensus 921 visHdl~~i-~~aDrIivL~p~gg~~~G~Iv~-~G~~~el~ 959 (993)
T 2ygr_A 921 VIEHNLDVI-KTSDWIIDLGPEGGAGGGTVVA-QGTPEDVA 959 (993)
T ss_dssp EECCCHHHH-TTCSEEEEEESSSTTSCSEEEE-EECHHHHH
T ss_pred EEcCCHHHH-HhCCEEEEECCCcCCCCCEEEE-ecCHHHHH
Confidence 999999998 579999999 6899985 47766653
No 65
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.94 E-value=1.7e-26 Score=242.72 Aligned_cols=82 Identities=20% Similarity=0.343 Sum_probs=75.4
Q ss_pred hcccCCCCHHHHHHHHHHHHHc------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcC
Q psy11936 287 DRATKNFSGGWRMRVSLARALY------IEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCN 357 (548)
Q Consensus 287 ~~~~~~LSGGqkqRvaLAraL~------~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vad 357 (548)
++++.+|||||+|||+||+||+ .+|++|||||||++||+.++.++.++|..+ +.|||+||||+++ ...||
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d 352 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFD 352 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCS
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCC
Confidence 5789999999999999999999 799999999999999999999999999875 5799999999998 46799
Q ss_pred EEEEEeCCEEEE
Q psy11936 358 EIIHLDQQKLYY 369 (548)
Q Consensus 358 rIi~L~~G~i~~ 369 (548)
+|++|++|+++.
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999863
No 66
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.1e-30 Score=282.37 Aligned_cols=198 Identities=14% Similarity=0.175 Sum_probs=138.8
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCe-E-EEEeceeeccCchhHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI-D-ILYCEQEVVADDLTAVES 222 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g-~-I~~~~q~i~~~~~~~~~~ 222 (548)
.+|+++||+++|+ ++||++.+|++++|+||||||||||+|+|+|. ..|.+| . |.+++ +.. ...
T Consensus 117 ~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl--~~p~~G~~pI~vdg-~~~-~~i----- 181 (460)
T 2npi_A 117 TMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSY--ALKFNAYQPLYINL-DPQ-QPI----- 181 (460)
T ss_dssp THHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHT--THHHHCCCCEEEEC-CTT-SCS-----
T ss_pred chhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCc--ccccCCceeEEEcC-Ccc-CCe-----
Confidence 3577888888885 79999999999999999999999999999985 356667 6 76654 110 000
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
.++++...+.......++.+++ + ............++..++..+|+... .+ +.+|||||+|||+
T Consensus 182 ---------~~vpq~~~l~~~~~~~tv~eni---~-~~~~~~~~~~~~~~~~ll~~~gl~~~-~~--~~~LSgGq~qrla 245 (460)
T 2npi_A 182 ---------FTVPGCISATPISDILDAQLPT---W-GQSLTSGATLLHNKQPMVKNFGLERI-NE--NKDLYLECISQLG 245 (460)
T ss_dssp ---------SSCSSCCEEEECCSCCCTTCTT---C-SCBCBSSCCSSCCBCCEECCCCSSSG-GG--CHHHHHHHHHHHH
T ss_pred ---------eeeccchhhcccccccchhhhh---c-ccccccCcchHHHHHHHHHHhCCCcc-cc--hhhhhHHHHHHHH
Confidence 0000000000000000111000 0 00000000112234557788898743 33 7899999999999
Q ss_pred HHHH--HccCCCE----EEEeC-CCCCCCHHHHHHHHHHHhhcCCeEEEEecCHH------HHHhhcCE-----EEEEe-
Q psy11936 303 LARA--LYIEPTL----LLLDE-PTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQS------FLDNVCNE-----IIHLD- 363 (548)
Q Consensus 303 LAra--L~~~P~l----LLLDE-PTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~------~l~~vadr-----Ii~L~- 363 (548)
|||| |+.+|++ ||||| ||++||+. ...|.++++.++.|+|+||||.. ++..+||+ |++|+
T Consensus 246 lAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k 324 (460)
T 2npi_A 246 QVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPK 324 (460)
T ss_dssp HHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECC
T ss_pred HHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeC
Confidence 9999 9999999 99999 99999999 88899999888999999999987 77889999 99999
Q ss_pred CCEEEEEcCCHHH
Q psy11936 364 QQKLYYYKGNYSM 376 (548)
Q Consensus 364 ~G~i~~~~g~y~~ 376 (548)
+|+++ .|+.+.
T Consensus 325 ~G~iv--~g~~~~ 335 (460)
T 2npi_A 325 LDGVS--AVDDVY 335 (460)
T ss_dssp CTTCC--CCCHHH
T ss_pred CCcEE--ECCHHH
Confidence 99998 566544
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.92 E-value=2.4e-25 Score=229.83 Aligned_cols=89 Identities=16% Similarity=0.195 Sum_probs=76.2
Q ss_pred hhcccCCCCHHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEE
Q psy11936 286 QDRATKNFSGGWRMRVSLARALY----IEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEI 359 (548)
Q Consensus 286 ~~~~~~~LSGGqkqRvaLAraL~----~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrI 359 (548)
.+.++..|||||||||+||+||+ .+|+||||||||++||+..+.+|.++|..+ +.|||+|||+.+ +..+||++
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~~ 291 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADLL 291 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSEE
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCceE
Confidence 46678899999999999999997 689999999999999999999999999876 569999999975 45689987
Q ss_pred --EEEeCCEEEEEcCCHH
Q psy11936 360 --IHLDQQKLYYYKGNYS 375 (548)
Q Consensus 360 --i~L~~G~i~~~~g~y~ 375 (548)
++|.+|.......+.+
T Consensus 292 ~~v~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 292 HGVTMVNGVSAIVPVEVE 309 (322)
T ss_dssp EEEEESSSCEEEEECCC-
T ss_pred EEEEEeCCEEEEEEEEcc
Confidence 8888887766555544
No 68
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.91 E-value=3.5e-25 Score=208.00 Aligned_cols=145 Identities=13% Similarity=0.150 Sum_probs=93.5
Q ss_pred eeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHHHhhh
Q psy11936 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAA 243 (548)
Q Consensus 164 ~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 243 (548)
||||+|.+|++++|+||||||||||++++.+.. .+. +...+... +.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~--------------~~~--~~d~~~g~----------~~~~------ 48 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPT--------------EVI--SSDFCRGL----------MSDD------ 48 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGG--------------GEE--EHHHHHHH----------HCSS------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCC--------------eEE--ccHHHHHH----------hcCc------
Confidence 689999999999999999999999999875310 000 00011100 0000
Q ss_pred cCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q psy11936 244 DFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHL 323 (548)
Q Consensus 244 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~L 323 (548)
........ ..+..+ . .........|+.. . .......||||+|||+|||||+.+|++|||||||++|
T Consensus 49 ~~~~~~~~---~~~~~~--------~-~~~~~~~~~g~~~-~-~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~L 114 (171)
T 4gp7_A 49 ENDQTVTG---AAFDVL--------H-YIVSKRLQLGKLT-V-VDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVC 114 (171)
T ss_dssp TTCGGGHH---HHHHHH--------H-HHHHHHHHTTCCE-E-EESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHH
T ss_pred ccchhhHH---HHHHHH--------H-HHHHHHHhCCCeE-E-EECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHH
Confidence 00000000 000000 0 0111222345442 2 2234567999999999999999999999999999999
Q ss_pred CHH----------------HHHHHHHHHhh---cCCeEEEEecCHHHHHh
Q psy11936 324 DLN----------------AVIWLDNYLQG---WKKTLLIVSHDQSFLDN 354 (548)
Q Consensus 324 D~~----------------s~~~L~~~L~~---~~~TvIiVSHD~~~l~~ 354 (548)
|+. ....+.+.|.. .+.|+|+||||++++..
T Consensus 115 d~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 115 QERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEE 164 (171)
T ss_dssp HHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHH
T ss_pred HHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhh
Confidence 998 55777777543 36899999999999976
No 69
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.89 E-value=1.7e-24 Score=205.32 Aligned_cols=82 Identities=5% Similarity=-0.016 Sum_probs=72.5
Q ss_pred hhhcccCCCCHHHHHHHHHHHH-----HccCCCEEEEeC--CCCCCCHHHHHHHHHHHhhcCCeEEEEe---cCHHHHHh
Q psy11936 285 MQDRATKNFSGGWRMRVSLARA-----LYIEPTLLLLDE--PTNHLDLNAVIWLDNYLQGWKKTLLIVS---HDQSFLDN 354 (548)
Q Consensus 285 ~~~~~~~~LSGGqkqRvaLAra-----L~~~P~lLLLDE--PTn~LD~~s~~~L~~~L~~~~~TvIiVS---HD~~~l~~ 354 (548)
..++++.+|||||+||++||+| |+.+|++||||| ||++||+....++.+++.+.+.|+|++| ||+.++..
T Consensus 69 ~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~ 148 (178)
T 1ye8_A 69 LVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKE 148 (178)
T ss_dssp EETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHH
T ss_pred cccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHH
Confidence 3577889999999999999996 999999999999 9999999999999999998777788888 59999999
Q ss_pred hcCEEEEEeCCEEEEE
Q psy11936 355 VCNEIIHLDQQKLYYY 370 (548)
Q Consensus 355 vadrIi~L~~G~i~~~ 370 (548)
+|++ .+|+++.+
T Consensus 149 i~~r----~~~~i~~~ 160 (178)
T 1ye8_A 149 IRRL----PGAVLIEL 160 (178)
T ss_dssp HHTC----TTCEEEEC
T ss_pred HHhc----CCcEEEEe
Confidence 9997 44555543
No 70
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.88 E-value=5.7e-23 Score=235.20 Aligned_cols=198 Identities=23% Similarity=0.238 Sum_probs=140.9
Q ss_pred HHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHhh---cCCeEEE
Q psy11936 270 PRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPT--LLLLDEPTNHLDLNAVIWLDNYLQG---WKKTLLI 344 (548)
Q Consensus 270 ~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~--lLLLDEPTn~LD~~s~~~L~~~L~~---~~~TvIi 344 (548)
.++. .|..+||....+++++.+|||||+|||+||++|+.+|+ ||||||||++||+..+.+|.++|+. .+.|||+
T Consensus 358 ~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIv 436 (842)
T 2vf7_A 358 KRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFV 436 (842)
T ss_dssp HHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEE
T ss_pred HHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 4444 68899997544799999999999999999999999995 9999999999999999999887654 4789999
Q ss_pred EecCHHHHHhhcCEEEEE------eCCEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy11936 345 VSHDQSFLDNVCNEIIHL------DQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKE 418 (548)
Q Consensus 345 VSHD~~~l~~vadrIi~L------~~G~i~~~~g~y~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~ 418 (548)
||||++++. .||+|++| ++|+++ +.|++++|....... . .
T Consensus 437 VeHdl~~l~-~aD~ii~lgpgaG~~~G~iv-~~g~~~~~~~~~~~~--------------~--------------~---- 482 (842)
T 2vf7_A 437 VEHDLDVIR-RADWLVDVGPEAGEKGGEIL-YSGPPEGLKHVPESQ--------------T--------------G---- 482 (842)
T ss_dssp ECCCHHHHT-TCSEEEEECSSSGGGCCSEE-EEECGGGGGGCTTCH--------------H--------------H----
T ss_pred EcCCHHHHH-hCCEEEEeCCCcccCCCEEE-EecCHHHHHhchHHH--------------H--------------H----
Confidence 999999875 69999999 678887 468888764311000 0 0
Q ss_pred HHHHHHHHHHHHHhhhcccCCCcccccCCccceeeeecCCCCCCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEe
Q psy11936 419 VLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFPDPPPLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELI 497 (548)
Q Consensus 419 ~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f~~~~~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i 497 (548)
. .+.. . ... + +...+.+.++|+++++++. .|+||||.. .|+.+.|
T Consensus 483 -------~---~l~~---~-~~~-----~---------~~~~~~~~~~L~v~~l~~~------~L~~vsl~i~~Geiv~I 528 (842)
T 2vf7_A 483 -------Q---YLFA---D-RHT-----E---------PHTPREPAGWLELNGVTRN------NLDNLDVRFPLGVMTSV 528 (842)
T ss_dssp -------H---HHHT---C-CCC-----C---------CCCCCCCSCEEEEEEEEET------TEEEEEEEEESSSEEEE
T ss_pred -------H---Hhhh---c-ccc-----c---------ccccCCCCceEEEEeeeec------ccccceEEEcCCCEEEE
Confidence 0 0000 0 000 0 0011234578999999861 699999986 9999999
Q ss_pred ecCc----cceeec-cC-------CCCCCCCCCe-------------eec---cceeeeeeecccee
Q psy11936 498 QKPR----EYVVKF-SF-------PDPPPLQPPI-------------LGL---HNVTFAYEGMKPLL 536 (548)
Q Consensus 498 ~~~~----~~~~~~-~~-------~~~~~~~~~~-------------~~~---~n~~~~y~~~~~~~ 536 (548)
.|+| |||+++ |+ |..+|..|.+ ..+ +-.++-|+.|+|+-
T Consensus 529 ~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq~~i~ 595 (842)
T 2vf7_A 529 TGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQKPIG 595 (842)
T ss_dssp ECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECSSCSC
T ss_pred EcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECCeeCC
Confidence 9986 899997 65 4445655654 223 44567799999874
No 71
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.88 E-value=1e-25 Score=219.06 Aligned_cols=160 Identities=13% Similarity=0.116 Sum_probs=91.5
Q ss_pred EeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHH
Q psy11936 155 SAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELL 234 (548)
Q Consensus 155 ~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~ 234 (548)
+|+++.+|+++ .+|+++||+|||||||||||++|+|. .|.+|+|... .+.... .... ...+++
T Consensus 9 ~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl---~p~~G~I~~~--~~~~~~-~~~~-------~~ig~v 71 (208)
T 3b85_A 9 TLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ---ALQSKQVSRI--ILTRPA-VEAG-------EKLGFL 71 (208)
T ss_dssp SHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH---HHHTTSCSEE--EEEECS-CCTT-------CCCCSS
T ss_pred CHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC---CCcCCeeeeE--EecCCc-hhhh-------cceEEe
Confidence 46667788886 89999999999999999999999984 4555655321 111000 0000 000011
Q ss_pred HHHHHHhhh-cCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCE
Q psy11936 235 AECAKLEAA-DFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTL 313 (548)
Q Consensus 235 ~~~~~~~~~-~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~l 313 (548)
++.. .++. .+... ....+. ......++.++++. |+ ||||||+|||||+.+|+|
T Consensus 72 ~q~~-~enl~~~~~~-------~~~~~~---~~~~~~~~~~~l~~-gl--------------Gq~qrv~lAraL~~~p~l 125 (208)
T 3b85_A 72 PGTL-NEKIDPYLRP-------LHDALR---DMVEPEVIPKLMEA-GI--------------VEVAPLAYMRGRTLNDAF 125 (208)
T ss_dssp CC-------CTTTHH-------HHHHHT---TTSCTTHHHHHHHT-TS--------------EEEEEGGGGTTCCBCSEE
T ss_pred cCCH-HHHHHHHHHH-------HHHHHH---HhccHHHHHHHHHh-CC--------------chHHHHHHHHHHhcCCCE
Confidence 1100 0000 00000 001111 10112345555554 33 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCE
Q psy11936 314 LLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQK 366 (548)
Q Consensus 314 LLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~ 366 (548)
|||||||++ ++.++.++|.++ +.||| ||||++++.. +..+.+|.
T Consensus 126 llLDEPts~----~~~~l~~~l~~l~~g~tii-vtHd~~~~~~----~~~~~~G~ 171 (208)
T 3b85_A 126 VILDEAQNT----TPAQMKMFLTRLGFGSKMV-VTGDITQVDL----PGGQKSGL 171 (208)
T ss_dssp EEECSGGGC----CHHHHHHHHTTBCTTCEEE-EEEC----------------CC
T ss_pred EEEeCCccc----cHHHHHHHHHHhcCCCEEE-EECCHHHHhC----cCCCCCcH
Confidence 999999999 888888888876 46888 9999987653 33445553
No 72
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.88 E-value=3.5e-22 Score=207.62 Aligned_cols=81 Identities=28% Similarity=0.444 Sum_probs=70.1
Q ss_pred hhcccCCCCHHHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhc
Q psy11936 286 QDRATKNFSGGWRM------RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVC 356 (548)
Q Consensus 286 ~~~~~~~LSGGqkq------RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~va 356 (548)
.++++.+||||||| |+++|++|+.+|++|||||||+|||+.++..|.++|..+ +.|||+||||.++ ..+|
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~-~~~~ 320 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL-KDAA 320 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGG-GGGC
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHH-HHhC
Confidence 46788999999999 678888889999999999999999999999999998765 3599999999765 5789
Q ss_pred CEEEEEe--CCEE
Q psy11936 357 NEIIHLD--QQKL 367 (548)
Q Consensus 357 drIi~L~--~G~i 367 (548)
|+|++|+ +|..
T Consensus 321 d~~~~l~~~~g~s 333 (339)
T 3qkt_A 321 DHVIRISLENGSS 333 (339)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEecCCcc
Confidence 9999885 5543
No 73
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.87 E-value=6.7e-22 Score=227.86 Aligned_cols=196 Identities=18% Similarity=0.181 Sum_probs=138.5
Q ss_pred HHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccC--CCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCeEEEEecC
Q psy11936 274 RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIE--PTLLLLDEPTNHLDLNAVIWLDNYLQG---WKKTLLIVSHD 348 (548)
Q Consensus 274 ~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~--P~lLLLDEPTn~LD~~s~~~L~~~L~~---~~~TvIiVSHD 348 (548)
+.|..+||....+++++.+|||||+|||+||++|.++ |.||||||||++||+....+|.++|+. .+.|||+||||
T Consensus 503 ~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHd 582 (993)
T 2ygr_A 503 GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHD 582 (993)
T ss_dssp HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCC
Confidence 4588889964346899999999999999999999999 589999999999999999999988765 46899999999
Q ss_pred HHHHHhhcCEEEEE------eCCEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q psy11936 349 QSFLDNVCNEIIHL------DQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTR 422 (548)
Q Consensus 349 ~~~l~~vadrIi~L------~~G~i~~~~g~y~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~ 422 (548)
++++. .||+|++| ++|+++ +.|++++|...... +. .
T Consensus 583 l~~i~-~ADrIi~Lgp~aG~~gG~iv-~~G~~~e~~~~~~~------------------lt----------~-------- 624 (993)
T 2ygr_A 583 EDTIE-HADWIVDIGPGAGEHGGRIV-HSGPYDELLRNKDS------------------IT----------G-------- 624 (993)
T ss_dssp HHHHH-TCSEEEEECSSSGGGCCSCC-EEECHHHHHHCTTC------------------HH----------H--------
T ss_pred HHHHH-hCCEEEEecCccccCCCEEE-EeeCHHHhhhhhHH------------------HH----------H--------
Confidence 99986 69999999 678877 56898877532100 00 0
Q ss_pred HHHHHHHHHhhhcccCCCcccccCCccceeeeecCCCCC-CC-CCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeec
Q psy11936 423 KQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFPDPPP-LQ-PPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQK 499 (548)
Q Consensus 423 ~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f~~~~~-~~-~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~ 499 (548)
. .+.. . .... +|...+ .. .++|++++++. ..|+||||.. .|..+.|.|
T Consensus 625 ---~---~l~g---~-~~~~-------------~~~~~~~~~~~~~L~v~~l~~------~~Lk~Vsl~I~~GeivaI~G 675 (993)
T 2ygr_A 625 ---A---YLSG---R-ESIE-------------IPAIRRSVDPRRQLTVVGARE------HNLRGIDVSFPLGVLTSVTG 675 (993)
T ss_dssp ---H---HHHT---S-SCCC-------------CCSSCCCCCSSSEEEEEEECS------TTCCSEEEEEESSSEEEEEC
T ss_pred ---H---Hhcc---C-cccc-------------CccccccCCCCceEEEecCcc------ccccCceEEECCCCEEEEEc
Confidence 0 0000 0 0000 011011 11 46899999863 3699999985 999999999
Q ss_pred Cc----cceeeccC-CC----CC---CCCCCe---eeccce-eeeeeecccee
Q psy11936 500 PR----EYVVKFSF-PD----PP---PLQPPI---LGLHNV-TFAYEGMKPLL 536 (548)
Q Consensus 500 ~~----~~~~~~~~-~~----~~---~~~~~~---~~~~n~-~~~y~~~~~~~ 536 (548)
+| |||+++|+ |. +. +..|.+ .+.+++ ++-|+.|+|+-
T Consensus 676 ~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig 728 (993)
T 2ygr_A 676 VSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIG 728 (993)
T ss_dssp STTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSC
T ss_pred CCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccc
Confidence 86 89999974 22 11 234432 222222 35688888863
No 74
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.86 E-value=1.5e-21 Score=225.09 Aligned_cols=106 Identities=25% Similarity=0.395 Sum_probs=93.2
Q ss_pred HHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEE
Q psy11936 271 RARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPT--LLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIV 345 (548)
Q Consensus 271 ~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~--lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiV 345 (548)
+..++|..+||.....++++.+|||||+|||+|||||+++|+ ||||||||+|||+....+|.++|+++ +.|||+|
T Consensus 443 ~~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivV 522 (916)
T 3pih_A 443 KRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVV 522 (916)
T ss_dssp HHHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEE
T ss_pred HHHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 345678889997544689999999999999999999999887 99999999999999999999999876 4799999
Q ss_pred ecCHHHHHhhcCEEEEE------eCCEEEEEcCCHHHHH
Q psy11936 346 SHDQSFLDNVCNEIIHL------DQQKLYYYKGNYSMFK 378 (548)
Q Consensus 346 SHD~~~l~~vadrIi~L------~~G~i~~~~g~y~~f~ 378 (548)
|||++++.. ||+|++| ++|++++ .|+++++.
T Consensus 523 tHd~~~~~~-aD~ii~lgpgag~~~G~iv~-~G~~~e~~ 559 (916)
T 3pih_A 523 EHDEEVIRN-ADHIIDIGPGGGTNGGRVVF-QGTVDELL 559 (916)
T ss_dssp CCCHHHHHT-CSEEEEEESSSGGGCSEEEE-EECHHHHH
T ss_pred eCCHHHHHh-CCEEEEEcCCcccCCCEEEE-eechhhhh
Confidence 999999865 9999999 8888874 68887653
No 75
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.86 E-value=9.3e-21 Score=198.50 Aligned_cols=83 Identities=18% Similarity=0.078 Sum_probs=74.9
Q ss_pred hcccC-CCCHHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhc
Q psy11936 287 DRATK-NFSGGWRMRVSLARALY---------IEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVC 356 (548)
Q Consensus 287 ~~~~~-~LSGGqkqRvaLAraL~---------~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~va 356 (548)
++++. .|||||+|||+||++|+ .+|+||||||||++||+..+..|.++|..+..|+|++||+ +. .|
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~ 334 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GA 334 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TC
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cC
Confidence 56777 89999999999999999 8999999999999999999999999999887899999995 43 89
Q ss_pred CEEEEEeCCEEEEEcCCH
Q psy11936 357 NEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 357 drIi~L~~G~i~~~~g~y 374 (548)
|++++|++|+++.. |+.
T Consensus 335 ~~i~~l~~G~i~~~-g~~ 351 (359)
T 2o5v_A 335 ALTLRAQAGRFTPV-ADE 351 (359)
T ss_dssp SEEEEEETTEEEEC-CCT
T ss_pred CEEEEEECCEEEec-CCH
Confidence 99999999999865 443
No 76
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.85 E-value=8.3e-22 Score=226.39 Aligned_cols=196 Identities=18% Similarity=0.156 Sum_probs=138.3
Q ss_pred HHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCeEEEEecC
Q psy11936 274 RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEP--TLLLLDEPTNHLDLNAVIWLDNYLQG---WKKTLLIVSHD 348 (548)
Q Consensus 274 ~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P--~lLLLDEPTn~LD~~s~~~L~~~L~~---~~~TvIiVSHD 348 (548)
+.|..+||....+++++.+|||||+|||+||++|..+| +||||||||++||+....+|.++|++ .+.|||+||||
T Consensus 486 ~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHd 565 (972)
T 2r6f_A 486 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 565 (972)
T ss_dssp HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCC
T ss_pred HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 46889999743469999999999999999999999985 99999999999999999999988765 46899999999
Q ss_pred HHHHHhhcCEEEEE------eCCEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q psy11936 349 QSFLDNVCNEIIHL------DQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTR 422 (548)
Q Consensus 349 ~~~l~~vadrIi~L------~~G~i~~~~g~y~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~ 422 (548)
++++. .||+|++| ++|++++ .|+++++...... +. .
T Consensus 566 l~~i~-~ADrIi~LgpgaG~~gG~iv~-~G~~~e~~~~~~s------------------lt-------~----------- 607 (972)
T 2r6f_A 566 EDTML-AADYLIDIGPGAGIHGGEVVA-AGTPEEVMNDPNS------------------LT-------G----------- 607 (972)
T ss_dssp HHHHH-SCSEEEEECSSSGGGCCSEEE-EECTTTTTTCTTC------------------TT-------H-----------
T ss_pred HHHHH-hCCEEEEeCCCccCCCCEEEE-ecCHHHHHhhhHH------------------HH-------H-----------
Confidence 99986 69999999 6888874 6888765321000 00 0
Q ss_pred HHHHHHHHHhhhcccCCCcccccCCccceeeeecCCCC-CCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecC
Q psy11936 423 KQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFPDPP-PLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKP 500 (548)
Q Consensus 423 ~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f~~~~-~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~ 500 (548)
+ .+.. .. .. .+|... ..+.++|++++++. ..|+||||.. .|+.+.|.|+
T Consensus 608 ---~---~l~g--~~--~~-------------~~~~~~~~~~~~~L~v~~l~~------~~Lk~Vsl~I~~Geiv~I~G~ 658 (972)
T 2r6f_A 608 ---Q---YLSG--KK--FI-------------PIPAERRRPDGRWLEVVGARE------HNLKNVSVKIPLGTFVAVTGV 658 (972)
T ss_dssp ---H---HHHT--SS--CC-------------CCCSSCCCCCSCEEEEEEECS------SSCCSEEEEEESSSEEECCBC
T ss_pred ---H---HhcC--Cc--cc-------------cCccccccccceEEEEecCcc------cccccceEEEcCCCEEEEEcC
Confidence 0 0000 00 00 011111 11347899999863 3699999986 9999999998
Q ss_pred c----cceeeccC-CCC-------CCCCCC---eeeccce-eeeeeecccee
Q psy11936 501 R----EYVVKFSF-PDP-------PPLQPP---ILGLHNV-TFAYEGMKPLL 536 (548)
Q Consensus 501 ~----~~~~~~~~-~~~-------~~~~~~---~~~~~n~-~~~y~~~~~~~ 536 (548)
| |||+++|+ |.+ .+..|. +.+.+++ .+-|+.|+|+-
T Consensus 659 nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig 710 (972)
T 2r6f_A 659 SGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIG 710 (972)
T ss_dssp TTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSC
T ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccc
Confidence 6 89999874 221 123343 2232222 35678888863
No 77
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.82 E-value=1.6e-24 Score=222.12 Aligned_cols=162 Identities=12% Similarity=0.052 Sum_probs=112.2
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEE-eceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILY-CEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~-~~q~i~~~~~~~~~~~~ 224 (548)
.|+++||+|+|+ ..+|+++||+|++|++++|+||||||||||+++|+|.. +|.|.. ..|.......+
T Consensus 101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I~~~v~q~~~lf~~t------ 168 (305)
T 2v9p_A 101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSVLSFANHKSHFWLAS------ 168 (305)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEEECGGGTTSGGGGGG------
T ss_pred eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceEEEEecCcccccccc------
Confidence 377889999998 77999999999999999999999999999999999852 566643 22221110000
Q ss_pred HhhHHHHHHHHHHHHHh-hhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLE-AADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~-~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
... +..+... ....+.+.+..+ +.. .++ +..||||||||
T Consensus 169 --------------i~~~ni~~~~~-------------------~~~~~~~~i~~~-L~~-gld--g~~LSgGqkQR--- 208 (305)
T 2v9p_A 169 --------------LADTRAALVDD-------------------ATHACWRYFDTY-LRN-ALD--GYPVSIDRKHK--- 208 (305)
T ss_dssp --------------GTTCSCEEEEE-------------------ECHHHHHHHHHT-TTG-GGG--TCCEECCCSSC---
T ss_pred --------------HHHHhhccCcc-------------------ccHHHHHHHHHH-hHc-cCC--ccCcCHHHHHH---
Confidence 000 0000000 001223344443 332 223 67999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
||||+.+|+||| |++||+.+...+.. +||++..+ ..||+| +|++|+++. .|+.+.+
T Consensus 209 ARAll~~p~iLl----Ts~LD~~~~~~i~~-----------ltH~~~~~-~~aD~i-vl~~G~iv~-~g~~~el 264 (305)
T 2v9p_A 209 AAVQIKAPPLLV----TSNIDVQAEDRYLY-----------LHSRVQTF-RFEQPC-TDESGEQPF-NITDADW 264 (305)
T ss_dssp CCCEECCCCEEE----EESSCSTTCGGGGG-----------GTTTEEEE-ECCCCC-CCC---CCC-CCCHHHH
T ss_pred HHHHhCCCCEEE----ECCCCHHHHHHHHH-----------HhCCHHHH-HhCCEE-EEeCCEEEE-eCCHHHH
Confidence 999999999999 99999988776642 29998876 579999 999999985 5777665
No 78
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.82 E-value=2e-23 Score=222.27 Aligned_cols=167 Identities=12% Similarity=0.099 Sum_probs=115.2
Q ss_pred ceeeEeeeEEEECCc--------------------EEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchh
Q psy11936 159 NDLFVNANLLIANGR--------------------RYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLT 218 (548)
Q Consensus 159 ~~iL~~vsl~I~~Ge--------------------~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~ 218 (548)
+.+|++|||+|.+|+ ++||+||||||||||+|+|+|. ..|..|.|.+.+.+.....
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl--~~p~~GsI~~~g~~~t~~~-- 111 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGI--GNEEEGAAKTGVVEVTMER-- 111 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTC--CTTSTTSCCCCC----CCC--
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCC--CCccCceEEECCeecceeE--
Confidence 458999999999999 9999999999999999999985 3556666655543321000
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHH--
Q psy11936 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGG-- 296 (548)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG-- 296 (548)
...+. . .....+..++. .++. ...++.++|+.+++... +..+. ||||
T Consensus 112 -------~v~q~-------~----~~~~ltv~D~~--------g~~~--~~~~~~~~L~~~~L~~~--~~~~~-lS~G~~ 160 (413)
T 1tq4_A 112 -------HPYKH-------P----NIPNVVFWDLP--------GIGS--TNFPPDTYLEKMKFYEY--DFFII-ISATRF 160 (413)
T ss_dssp -------EEEEC-------S----SCTTEEEEECC--------CGGG--SSCCHHHHHHHTTGGGC--SEEEE-EESSCC
T ss_pred -------Eeccc-------c----ccCCeeehHhh--------cccc--hHHHHHHHHHHcCCCcc--CCeEE-eCCCCc
Confidence 00000 0 00000000000 0000 12346778888988642 34444 9999
Q ss_pred HHHHHHHHHHHcc----------CCCEEEEeCCCCCCCHHHHHHHHHHHhhc------------CCeEEEEecCHHH--H
Q psy11936 297 WRMRVSLARALYI----------EPTLLLLDEPTNHLDLNAVIWLDNYLQGW------------KKTLLIVSHDQSF--L 352 (548)
Q Consensus 297 qkqRvaLAraL~~----------~P~lLLLDEPTn~LD~~s~~~L~~~L~~~------------~~TvIiVSHD~~~--l 352 (548)
|+||++||++|+. +|++|||||||++||+.++..+.+.|+++ ..+|+++||++.. +
T Consensus 161 ~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~ 240 (413)
T 1tq4_A 161 KKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDF 240 (413)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTH
T ss_pred cHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCH
Confidence 9999999999999 99999999999999998877776666543 2468889999887 8
Q ss_pred HhhcCEEE
Q psy11936 353 DNVCNEII 360 (548)
Q Consensus 353 ~~vadrIi 360 (548)
+.+||+|.
T Consensus 241 e~L~d~I~ 248 (413)
T 1tq4_A 241 PVLMDKLI 248 (413)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88999885
No 79
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.81 E-value=2.6e-21 Score=212.45 Aligned_cols=151 Identities=13% Similarity=0.109 Sum_probs=108.1
Q ss_pred eEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeE-EEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHHHhhhc
Q psy11936 166 NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNID-ILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAAD 244 (548)
Q Consensus 166 sl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~-I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 244 (548)
+..|.+|++++|+|+||||||||+++|+|... +.... +++..++. .. .+ ....
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~--~~G~~vi~~~~ee~----~~---~l----------~~~~------- 328 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENAC--ANKERAILFAYEES----RA---QL----------LRNA------- 328 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHH--TTTCCEEEEESSSC----HH---HH----------HHHH-------
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH--hCCCCEEEEEEeCC----HH---HH----------HHHH-------
Confidence 45899999999999999999999999998532 22222 34443321 00 00 0000
Q ss_pred CChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q psy11936 245 FSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324 (548)
Q Consensus 245 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD 324 (548)
..++. . +.+ +..+|+. ...+.++.+|||||+||+++|+++..+|++|||| ||++||
T Consensus 329 ----------------~~~g~-~----~~~-~~~~g~~-~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld 384 (525)
T 1tf7_A 329 ----------------YSWGM-D----FEE-MERQNLL-KIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALA 384 (525)
T ss_dssp ----------------HTTSC-C----HHH-HHHTTSE-EECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHT
T ss_pred ----------------HHcCC-C----HHH-HHhCCCE-EEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHH
Confidence 00110 0 011 1234443 2346778899999999999999999999999999 999999
Q ss_pred HH-----HHHHHHHHH---hhcCCeEEEEecCH----------HHHHhhcCEEEEEeCCE
Q psy11936 325 LN-----AVIWLDNYL---QGWKKTLLIVSHDQ----------SFLDNVCNEIIHLDQQK 366 (548)
Q Consensus 325 ~~-----s~~~L~~~L---~~~~~TvIiVSHD~----------~~l~~vadrIi~L~~G~ 366 (548)
.. .+..+.+++ ++.+.|||+||||. .++..+||+|++|++|+
T Consensus 385 ~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 385 RGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred hhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 98 777665554 45578999999999 78888999999998876
No 80
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.81 E-value=3.1e-22 Score=219.73 Aligned_cols=179 Identities=13% Similarity=0.075 Sum_probs=113.9
Q ss_pred EEEEeEEEEeCCceeeEeeeE-EEECCcEEEEECCCCCcHHHHHHH--HHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 147 IKVENFSISAKGNDLFVNANL-LIANGRRYGLVGPNGHGKTTLLRH--IASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl-~I~~Ge~igLvGpNGsGKSTLLkl--LaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
++.+++...+++..+|+++|| .|.+|++++|+||||||||||+++ ++|. ..|+.|.|.+.+.+.. .....
T Consensus 13 ~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl--~~~~~g~i~v~g~~~~----~~~~~- 85 (525)
T 1tf7_A 13 SEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGI--IEFDEPGVFVTFEETP----QDIIK- 85 (525)
T ss_dssp -CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHH--HHHCCCEEEEESSSCH----HHHHH-
T ss_pred ccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHH--HhCCCCEEEEEEeCCH----HHHHH-
Confidence 334456655667889999999 999999999999999999999999 6774 3456788888776521 11100
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
.....++..+........+ ....... ....++|..+++. ...++.+..|||||
T Consensus 86 ---~~~~~g~~~q~~~~~~~l~----------------~~~~~~~-~~~~~~l~~~~l~-~~~~~~~~~LS~g~------ 138 (525)
T 1tf7_A 86 ---NARSFGWDLAKLVDEGKLF----------------ILDASPD-PEGQEVVGGFDLS-ALIERINYAIQKYR------ 138 (525)
T ss_dssp ---HHGGGTCCHHHHHHTTSEE----------------EEECCCC-SSCCSCCSSHHHH-HHHHHHHHHHHHHT------
T ss_pred ---HHHHcCCChHHhhccCcEE----------------EEecCcc-cchhhhhcccCHH-HHHHHHHHHHHHcC------
Confidence 0011111111110000000 0000000 0011233344443 24566777788775
Q ss_pred HHHHccCCCEEEEeCCCCC-----CCHHHHHHHHHHHhh---cCCeEEEEecCHHHH---------HhhcCEEEEEeCCE
Q psy11936 304 ARALYIEPTLLLLDEPTNH-----LDLNAVIWLDNYLQG---WKKTLLIVSHDQSFL---------DNVCNEIIHLDQQK 366 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~-----LD~~s~~~L~~~L~~---~~~TvIiVSHD~~~l---------~~vadrIi~L~~G~ 366 (548)
|++|+|||||+. ||+..+..|.++++. .+.|||+|||+++.+ ..+||+|++|++|.
T Consensus 139 -------~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 139 -------ARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp -------CSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred -------CCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 789999999985 588888777777654 478999999999884 56699999999843
No 81
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.79 E-value=4e-23 Score=199.43 Aligned_cols=76 Identities=9% Similarity=-0.056 Sum_probs=60.7
Q ss_pred HHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCC----CHHHHHHHHHHHhhc----CCeEEEEec
Q psy11936 276 LAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHL----DLNAVIWLDNYLQGW----KKTLLIVSH 347 (548)
Q Consensus 276 L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~L----D~~s~~~L~~~L~~~----~~TvIiVSH 347 (548)
++.+|+. ...++++..|| +|+.+|++++|||||++| |+..+..+.+++.++ +.|+|+|||
T Consensus 119 l~~~gl~-~~~~~~~~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtH 186 (207)
T 1znw_A 119 VDLAGAR-AIKKTMPEAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNR 186 (207)
T ss_dssp CCHHHHH-HHHHHCTTSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECS
T ss_pred eCHHHHH-HHHHhcCCcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECC
Confidence 3344553 34567788888 999999999999999998 677877777776543 579999999
Q ss_pred CHHHHHhhcCEEEEEe
Q psy11936 348 DQSFLDNVCNEIIHLD 363 (548)
Q Consensus 348 D~~~l~~vadrIi~L~ 363 (548)
|++++..+||+|++|.
T Consensus 187 dl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 187 RLESACAELVSLLVGT 202 (207)
T ss_dssp SHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999999984
No 82
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.79 E-value=2.8e-19 Score=164.66 Aligned_cols=81 Identities=31% Similarity=0.447 Sum_probs=72.3
Q ss_pred hhcccCCCCHHHHHHHHHH------HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhc
Q psy11936 286 QDRATKNFSGGWRMRVSLA------RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVC 356 (548)
Q Consensus 286 ~~~~~~~LSGGqkqRvaLA------raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~va 356 (548)
.++++.+|||||||||+|| |||+.+|++|||||||++||+.++.++.++|..+ +.|||+||||.+ +..+|
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~ 129 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAA 129 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGC
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhC
Confidence 4678999999999999876 8999999999999999999999999999999876 469999999995 56799
Q ss_pred CEEEEE--eCCEE
Q psy11936 357 NEIIHL--DQQKL 367 (548)
Q Consensus 357 drIi~L--~~G~i 367 (548)
|++++| .+|..
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 999999 56644
No 83
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.79 E-value=5e-20 Score=215.51 Aligned_cols=165 Identities=16% Similarity=0.089 Sum_probs=107.9
Q ss_pred ccEEEEe-----EEEEe-CCceeeEeeeEEEEC-------CcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEecee
Q psy11936 145 VDIKVEN-----FSISA-KGNDLFVNANLLIAN-------GRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQE 211 (548)
Q Consensus 145 ~~I~l~n-----ls~~y-~~~~iL~~vsl~I~~-------Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~ 211 (548)
.+|+++| |++.| ++..+++|++|++.+ |++++|+||||||||||||+| |.......-|. |..+.
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~--~Vpq~ 825 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGC--YVPAE 825 (1022)
T ss_dssp CCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHHHTTTC--CEESS
T ss_pred ceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHHhheeE--EeccC
Confidence 3699999 99999 677899999999987 999999999999999999999 74211000000 11111
Q ss_pred eccCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccC
Q psy11936 212 VVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATK 291 (548)
Q Consensus 212 i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~ 291 (548)
... .+ +. ..++..+|+.+ ......+
T Consensus 826 ~~~--l~------------------------------v~----------------------d~I~~rig~~d-~~~~~~s 850 (1022)
T 2o8b_B 826 VCR--LT------------------------------PI----------------------DRVFTRLGASD-RIMSGES 850 (1022)
T ss_dssp EEE--EC------------------------------CC----------------------SBEEEECC----------C
T ss_pred cCC--CC------------------------------HH----------------------HHHHHHcCCHH-HHhhchh
Confidence 000 00 00 00112234332 2233456
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH-HH---HHHHHHhhc-CCeEEEEecCHHHHHhhcCEEEEEeCCE
Q psy11936 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA-VI---WLDNYLQGW-KKTLLIVSHDQSFLDNVCNEIIHLDQQK 366 (548)
Q Consensus 292 ~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s-~~---~L~~~L~~~-~~TvIiVSHD~~~l~~vadrIi~L~~G~ 366 (548)
++|+|+++ +++|++++.+|+||||||||+|+|+.. .. .+.+.|.+. +.++|++|||.+++..+||+++++ +|+
T Consensus 851 tf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~ 928 (1022)
T 2o8b_B 851 TFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGH 928 (1022)
T ss_dssp HHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEE
T ss_pred hhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCe
Confidence 78888775 999999999999999999999999865 23 233444433 789999999999999999999887 477
Q ss_pred EEE
Q psy11936 367 LYY 369 (548)
Q Consensus 367 i~~ 369 (548)
+..
T Consensus 929 ~~~ 931 (1022)
T 2o8b_B 929 MAC 931 (1022)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 84
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.79 E-value=1.1e-19 Score=184.47 Aligned_cols=181 Identities=14% Similarity=0.102 Sum_probs=109.3
Q ss_pred ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCe-EEEEeceeeccCchhHHHHHHHhhHHHHHHHHHH
Q psy11936 159 NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI-DILYCEQEVVADDLTAVESVLKADVKRTELLAEC 237 (548)
Q Consensus 159 ~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g-~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~ 237 (548)
..+|+++++.|.+|++++|+||||||||||+++|+|.. .+..| .+.|.+.+.. ...+.. + +....
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~--~~~~G~~v~~~~~e~~---~~~~~~-------r--~~~~~ 87 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQW--GTAMGKKVGLAMLEES---VEETAE-------D--LIGLH 87 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHH--HHTSCCCEEEEESSSC---HHHHHH-------H--HHHHH
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHH--HHHcCCeEEEEeCcCC---HHHHHH-------H--HHHHH
Confidence 35799999999999999999999999999999999852 33445 6777665431 111100 0 00000
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHH-HHHHHHHHHHccCCCEEEE
Q psy11936 238 AKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGW-RMRVSLARALYIEPTLLLL 316 (548)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq-kqRvaLAraL~~~P~lLLL 316 (548)
. . ........+.. ..+ ........+..+|...++. ....+..+|.++ +||+. |+++..+|++|||
T Consensus 88 ~---~--~~~~~~~~l~~--~~~---~~~~~~~~~~~~l~~~~l~---i~~~~~~~~~~~l~~~~~-a~~~~~~p~llil 153 (296)
T 1cr0_A 88 N---R--VRLRQSDSLKR--EII---ENGKFDQWFDELFGNDTFH---LYDSFAEAETDRLLAKLA-YMRSGLGCDVIIL 153 (296)
T ss_dssp T---T--CCGGGCHHHHH--HHH---HHTHHHHHHHHHHSSSCEE---EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEE
T ss_pred c---C--CChhhcccccc--CCC---CHHHHHHHHHHHhccCCEE---EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEE
Confidence 0 0 00000000000 001 0111222344444433432 123346789999 56666 9999999999999
Q ss_pred eCCCC---C---CCH-HHHHHHHHHHh----hcCCeEEEEecCH--H--------------------HHHhhcCEEEEEe
Q psy11936 317 DEPTN---H---LDL-NAVIWLDNYLQ----GWKKTLLIVSHDQ--S--------------------FLDNVCNEIIHLD 363 (548)
Q Consensus 317 DEPTn---~---LD~-~s~~~L~~~L~----~~~~TvIiVSHD~--~--------------------~l~~vadrIi~L~ 363 (548)
||||+ + +|. ..+..+.+.|+ +++.|||+|||+. + .+..+||+|++|+
T Consensus 154 Dept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~ 233 (296)
T 1cr0_A 154 DHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALE 233 (296)
T ss_dssp EEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEE
T ss_pred cCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEe
Confidence 99999 4 454 55555665554 4578999999995 5 7788999999998
Q ss_pred CCEE
Q psy11936 364 QQKL 367 (548)
Q Consensus 364 ~G~i 367 (548)
+|+.
T Consensus 234 ~~~~ 237 (296)
T 1cr0_A 234 RNQQ 237 (296)
T ss_dssp EC--
T ss_pred cCcc
Confidence 8864
No 85
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.79 E-value=3.8e-21 Score=200.67 Aligned_cols=192 Identities=17% Similarity=0.170 Sum_probs=123.4
Q ss_pred cEEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.++++++++.|+ +..+++++ |+|.+|+++||+|||||||||||++|+|. ..|..|.+.+.++.. ..+...+
T Consensus 45 ~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~--~~~~~g~i~~~G~~~-----~ev~~~i 116 (347)
T 2obl_A 45 PLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNG--ASADIIVLALIGERG-----REVNEFL 116 (347)
T ss_dssp STTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHH--SCCSEEEEEEESCCH-----HHHHHHH
T ss_pred CeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcC--CCCCEEEEEEecccH-----HHHHHHH
Confidence 578899999997 77899999 99999999999999999999999999985 356677777766531 1111111
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
.. ... ..+. .........+......+...+..+ .+.+.+...+-.-...-..+..||+|| |||+||
T Consensus 117 ~~-~~~-~~~~-~~v~~~~~~~~~~~~r~~~~~~~~----------~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la 182 (347)
T 2obl_A 117 AL-LPQ-STLS-KCVLVVTTSDRPALERMKAAFTAT----------TIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA 182 (347)
T ss_dssp TT-SCH-HHHT-TEEEEEECTTSCHHHHHHHHHHHH----------HHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH
T ss_pred Hh-hhh-hhhh-ceEEEEECCCCCHHHHHHHHHHHH----------HHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH
Confidence 11 000 0000 000000000111111111110000 001111111110000014578899999 899999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC-----C-----eEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK-----K-----TLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~-----~-----TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
+.+|++ |++||+.....+.+++.+.+ . ||+++|||++ ..+||++++|.+|+++..
T Consensus 183 ---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl~ 247 (347)
T 2obl_A 183 ---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVLT 247 (347)
T ss_dssp ---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEBC
T ss_pred ---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEEe
Confidence 678877 99999999999999998752 3 8999999998 678999999999999864
No 86
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.78 E-value=1.2e-19 Score=210.16 Aligned_cols=155 Identities=17% Similarity=0.123 Sum_probs=105.3
Q ss_pred cEEEEeEEEEe-----CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcC------CCCCCCCeE-EEEeceeec
Q psy11936 146 DIKVENFSISA-----KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR------DLKVPPNID-ILYCEQEVV 213 (548)
Q Consensus 146 ~I~l~nls~~y-----~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~------~~~~~~~g~-I~~~~q~i~ 213 (548)
.|.+.+...-+ ++..+++|++|++.+|++++|+||||||||||||+|++. +...|.... +.+.
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~----- 705 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIV----- 705 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECC-----
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHH-----
Confidence 36666655433 245689999999999999999999999999999999421 011221111 0000
Q ss_pred cCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCC
Q psy11936 214 ADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNF 293 (548)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~L 293 (548)
..++..+|+.+ .....+
T Consensus 706 -----------------------------------------------------------d~i~~~ig~~d----~l~~~l 722 (934)
T 3thx_A 706 -----------------------------------------------------------DCILARVGAGD----SQLKGV 722 (934)
T ss_dssp -----------------------------------------------------------SEEEEECC-------------
T ss_pred -----------------------------------------------------------HHHHHhcCchh----hHHHhH
Confidence 01223334432 234568
Q ss_pred CHHHHHHHHHHHHH--ccCCCEEEEeCCCCCCCHHHHHHH----HHHHhh-cCCeEEEEecCHHHHHhhcCEEEEEeCCE
Q psy11936 294 SGGWRMRVSLARAL--YIEPTLLLLDEPTNHLDLNAVIWL----DNYLQG-WKKTLLIVSHDQSFLDNVCNEIIHLDQQK 366 (548)
Q Consensus 294 SGGqkqRvaLAraL--~~~P~lLLLDEPTn~LD~~s~~~L----~~~L~~-~~~TvIiVSHD~~~l~~vadrIi~L~~G~ 366 (548)
|+|+.+++.+|++| +.+|+||||||||+|||+.....+ .+.+.+ .+.|+|++|||.++. .+||++..|.+|+
T Consensus 723 Stf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~v~ng~ 801 (934)
T 3thx_A 723 STFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIPTVNNLH 801 (934)
T ss_dssp CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTTEEEEE
T ss_pred hhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccceeEeeE
Confidence 88888888888888 999999999999999999765443 444544 478999999997765 6899998888888
Q ss_pred EEE
Q psy11936 367 LYY 369 (548)
Q Consensus 367 i~~ 369 (548)
+..
T Consensus 802 v~~ 804 (934)
T 3thx_A 802 VTA 804 (934)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 87
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.78 E-value=2.8e-20 Score=190.63 Aligned_cols=182 Identities=16% Similarity=0.139 Sum_probs=119.3
Q ss_pred eEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh-hHHHHHHHHHHHHH
Q psy11936 162 FVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA-DVKRTELLAECAKL 240 (548)
Q Consensus 162 L~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 240 (548)
+..+||++.+|++++|+||||||||||+++|+|. ..|.+|+|.+.+.++.... ...+.... ......++.+.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~--l~~~~g~V~l~g~d~~r~~--a~~ql~~~~~~~~i~~v~q~--- 162 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR--LKNEGTKVLMAAGDTFRAA--ASDQLEIWAERTGCEIVVAE--- 162 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHH--HHHTTCCEEEECCCCSCHH--HHHHHHHHHHHHTCEEECCC---
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHH--HHHcCCeEEEEeecccchh--HHHHHHHHHHhcCceEEEec---
Confidence 4568899999999999999999999999999985 3466789998887653211 00000000 00000000000
Q ss_pred hh-hcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCC--EEEEe
Q psy11936 241 EA-ADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPT--LLLLD 317 (548)
Q Consensus 241 ~~-~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~--lLLLD 317 (548)
.. ..+..++.+++... ...+ .. ..+++.+|+.. ..++++.+|| +||++|||||+.+|+ +|+||
T Consensus 163 ~~~~~~~~~v~e~l~~~----~~~~-~d-----~~lldt~gl~~-~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD 228 (302)
T 3b9q_A 163 GDKAKAATVLSKAVKRG----KEEG-YD-----VVLCDTSGRLH-TNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD 228 (302)
T ss_dssp --CCCHHHHHHHHHHHH----HHTT-CS-----EEEECCCCCSS-CCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE
T ss_pred CCccCHHHHHHHHHHHH----HHcC-Cc-----chHHhcCCCCc-chhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe
Confidence 00 00111222222110 0111 10 12456678763 4567888999 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCeEEEEec---------CHHHHHhhcCEEEEEeCCEE
Q psy11936 318 EPTNHLDLNAVIWLDNYLQGWKKTLLIVSH---------DQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 318 EPTn~LD~~s~~~L~~~L~~~~~TvIiVSH---------D~~~l~~vadrIi~L~~G~i 367 (548)
||++||+..+. ..+-...+.|+|++|| .++.+..++..|.++..|+.
T Consensus 229 -ptsglD~~~~~--~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 229 -GNTGLNMLPQA--REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp -GGGGGGGHHHH--HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred -CCCCcCHHHHH--HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 99999987653 3444456889999999 67778788899999999864
No 88
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.78 E-value=1.4e-21 Score=202.79 Aligned_cols=133 Identities=19% Similarity=0.146 Sum_probs=97.8
Q ss_pred eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHH
Q psy11936 160 DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAK 239 (548)
Q Consensus 160 ~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (548)
.+++++||.|.+|++++|+|||||||||||++|+|. ..|..|.|.+.+........
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~--~~~~~g~i~i~~~~e~~~~~---------------------- 214 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEF--IPKEERIISIEDTEEIVFKH---------------------- 214 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGG--SCTTSCEEEEESSCCCCCSS----------------------
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCC--CcCCCcEEEECCeecccccc----------------------
Confidence 478999999999999999999999999999999985 35677888876642110000
Q ss_pred HhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCC
Q psy11936 240 LEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEP 319 (548)
Q Consensus 240 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEP 319 (548)
. . ..+++ +.. |||+||++||+||..+|++||||||
T Consensus 215 -----~--------------------~----------~~i~~--------~~g--gg~~~r~~la~aL~~~p~ilildE~ 249 (330)
T 2pt7_A 215 -----H--------------------K----------NYTQL--------FFG--GNITSADCLKSCLRMRPDRIILGEL 249 (330)
T ss_dssp -----C--------------------S----------SEEEE--------ECB--TTBCHHHHHHHHTTSCCSEEEECCC
T ss_pred -----c--------------------h----------hEEEE--------EeC--CChhHHHHHHHHhhhCCCEEEEcCC
Confidence 0 0 00000 001 8999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCE
Q psy11936 320 TNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQK 366 (548)
Q Consensus 320 Tn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~ 366 (548)
|+. +....| ..+..-+.|+|++||+.+ +...|||+++|.+|.
T Consensus 250 ~~~---e~~~~l-~~~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 250 RSS---EAYDFY-NVLCSGHKGTLTTLHAGS-SEEAFIRLANMSSSN 291 (330)
T ss_dssp CST---HHHHHH-HHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHTS
T ss_pred ChH---HHHHHH-HHHhcCCCEEEEEEcccH-HHHHhhhheehhcCC
Confidence 982 333322 233322348999999999 667899999998775
No 89
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.77 E-value=1.6e-18 Score=185.52 Aligned_cols=75 Identities=17% Similarity=0.354 Sum_probs=67.0
Q ss_pred cccCCCCHHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC---CeEEEEecCHHHHHhhcCEEE
Q psy11936 288 RATKNFSGGWRMRVSLARALY----IEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQSFLDNVCNEII 360 (548)
Q Consensus 288 ~~~~~LSGGqkqRvaLAraL~----~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~---~TvIiVSHD~~~l~~vadrIi 360 (548)
+++..||||||||++||++|+ .+|++|||||||++||+..+..|.++|..+. .++|+|||+..++ ..||+++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~ 407 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALV 407 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEE
Confidence 345669999999999999999 5899999999999999999999999998763 5999999998776 5799999
Q ss_pred EEe
Q psy11936 361 HLD 363 (548)
Q Consensus 361 ~L~ 363 (548)
.|.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
No 90
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.77 E-value=2.1e-22 Score=196.53 Aligned_cols=179 Identities=11% Similarity=0.064 Sum_probs=91.5
Q ss_pred ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchh-HHHHHHHhhHHHHHHHHHH
Q psy11936 159 NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLT-AVESVLKADVKRTELLAEC 237 (548)
Q Consensus 159 ~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~-~~~~~~~~~~~~~~l~~~~ 237 (548)
..-|+||||+|.+|+++||+||||||||||+++|+|.. | |.|.+ +..+...... .....+...++....+...
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~---p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF---P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS---T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC---C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 35799999999999999999999999999999999852 3 56665 4433211000 0000000001111111111
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH-----HHHHccCCC
Q psy11936 238 AKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL-----ARALYIEPT 312 (548)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL-----AraL~~~P~ 312 (548)
.......+..+.. . ...+ .....+.+++....+. ..+ ..|||||+||++| |++|+.+|+
T Consensus 84 ~~~~~~l~~~~~~-------~--~~~g--~~~~~i~~~l~~~~~~--il~---~~lsggq~qR~~i~~~~~~~~ll~~~~ 147 (218)
T 1z6g_A 84 LKNEDFLEYDNYA-------N--NFYG--TLKSEYDKAKEQNKIC--LFE---MNINGVKQLKKSTHIKNALYIFIKPPS 147 (218)
T ss_dssp HHTTCEEEEEEET-------T--EEEE--EEHHHHHHHHHTTCEE--EEE---ECHHHHHHHTTCSSCCSCEEEEEECSC
T ss_pred hhccchhhhhhcc-------c--ccCC--CcHHHHHHHHhCCCcE--EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcC
Confidence 0000000000000 0 0000 1123455566654432 112 5799999999999 899999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc----------CCeEEEEecCHHHHHhhcCEE
Q psy11936 313 LLLLDEPTNHLDLNAVIWLDNYLQGW----------KKTLLIVSHDQSFLDNVCNEI 359 (548)
Q Consensus 313 lLLLDEPTn~LD~~s~~~L~~~L~~~----------~~TvIiVSHD~~~l~~vadrI 359 (548)
+++|||||+++|..+...+.+.|... ..+.|+|+||.+.+...+++|
T Consensus 148 ~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~i 204 (218)
T 1z6g_A 148 TDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNY 204 (218)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHH
Confidence 99999999999987766666655432 234455555555544444433
No 91
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.76 E-value=2.5e-19 Score=206.98 Aligned_cols=145 Identities=19% Similarity=0.217 Sum_probs=97.7
Q ss_pred cEEEEeEEEEe-------CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCC------CCCCCC-eEEEEecee
Q psy11936 146 DIKVENFSISA-------KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRD------LKVPPN-IDILYCEQE 211 (548)
Q Consensus 146 ~I~l~nls~~y-------~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~------~~~~~~-g~I~~~~q~ 211 (548)
.|.+++...-+ ++..+++|+||++.+|++++|+||||||||||||+|++.. ...|.. ..+.+.
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~--- 716 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIV--- 716 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECC---
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHH---
Confidence 46666655432 3467899999999999999999999999999999997521 011111 001000
Q ss_pred eccCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccC
Q psy11936 212 VVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATK 291 (548)
Q Consensus 212 i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~ 291 (548)
..++..+|+.+ ......+
T Consensus 717 -------------------------------------------------------------d~i~~~ig~~d-~l~~~~s 734 (918)
T 3thx_B 717 -------------------------------------------------------------DGIFTRMGAAD-NIYKGRS 734 (918)
T ss_dssp -------------------------------------------------------------SEEEEEC-----------C
T ss_pred -------------------------------------------------------------HHHHHhCChHH-HHHHhHH
Confidence 01222334332 2345678
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH----HHHh-hcCCeEEEEecCHHHHHhhcC
Q psy11936 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLD----NYLQ-GWKKTLLIVSHDQSFLDNVCN 357 (548)
Q Consensus 292 ~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~----~~L~-~~~~TvIiVSHD~~~l~~vad 357 (548)
+||+||++++.|+++ +.+|+||||||||+|||+.....+. +.+. ..+.|+|+||||.+++ .+|+
T Consensus 735 tfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~-~l~~ 803 (918)
T 3thx_B 735 TFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC-ELEK 803 (918)
T ss_dssp CHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHH
T ss_pred HhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH-HHHh
Confidence 899999999999999 8999999999999999997655443 3332 3478999999998775 3444
No 92
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.76 E-value=4.2e-22 Score=205.09 Aligned_cols=165 Identities=12% Similarity=-0.023 Sum_probs=107.2
Q ss_pred cEEEEeEEEEeCCceeeEeeeEE-----------------------EECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCC
Q psy11936 146 DIKVENFSISAKGNDLFVNANLL-----------------------IANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN 202 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~-----------------------I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~ 202 (548)
.|+++||++.|+ +++++++|. +.+|+++||+||||||||||+++|+|...+..+.
T Consensus 43 ~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~ 120 (312)
T 3aez_A 43 QIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH 120 (312)
T ss_dssp CCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC
T ss_pred eEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCCC
Confidence 488899999995 566776664 8899999999999999999999999853222222
Q ss_pred eEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCC
Q psy11936 203 IDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFS 282 (548)
Q Consensus 203 g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~ 282 (548)
..+.+..|+......+.... .. +.. .. ..........+.++|..++ .
T Consensus 121 ~~v~~v~qd~~~~~~t~~e~--------------~~-~~~-~~----------------g~~~~~d~~~~~~~L~~l~-~ 167 (312)
T 3aez_A 121 PRVDLVTTDGFLYPNAELQR--------------RN-LMH-RK----------------GFPESYNRRALMRFVTSVK-S 167 (312)
T ss_dssp CCEEEEEGGGGBCCHHHHHH--------------TT-CTT-CT----------------TSGGGBCHHHHHHHHHHHH-T
T ss_pred CeEEEEecCccCCcccHHHH--------------HH-HHH-hc----------------CCChHHHHHHHHHHHHHhC-C
Confidence 34666666543222111100 00 000 00 0000112345566777766 3
Q ss_pred hhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHH
Q psy11936 283 RAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSF 351 (548)
Q Consensus 283 ~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~ 351 (548)
. ..+.++..|||||+|||++|++++.+|+|||||||+..+|+.. ..+..+-..+|+|+|+.+.
T Consensus 168 ~-~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~D~~I~V~a~~~~ 230 (312)
T 3aez_A 168 G-SDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLFDFSLYVDARIED 230 (312)
T ss_dssp T-CSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGCSEEEEEEECHHH
T ss_pred C-cccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhcCcEEEEECCHHH
Confidence 2 2356788999999999999999999999999999999998521 1122222355777777655
No 93
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.75 E-value=1.7e-18 Score=169.71 Aligned_cols=71 Identities=14% Similarity=0.024 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCC-----HHHHHHHHHHH---hhcCCeEEEEecCHHHH---------Hhh
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLD-----LNAVIWLDNYL---QGWKKTLLIVSHDQSFL---------DNV 355 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD-----~~s~~~L~~~L---~~~~~TvIiVSHD~~~l---------~~v 355 (548)
.+-++.....++.+-..+|++|+|||||++|| +..+..+.+++ ++.+.|||+|||+...+ ..+
T Consensus 118 ~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~ 197 (251)
T 2ehv_A 118 FNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEF 197 (251)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGG
T ss_pred ccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhE
Confidence 34555555555556678999999999999997 55555455554 45578999999999998 678
Q ss_pred c-CEEEEEe
Q psy11936 356 C-NEIIHLD 363 (548)
Q Consensus 356 a-drIi~L~ 363 (548)
| |+|++|+
T Consensus 198 ~aD~vi~l~ 206 (251)
T 2ehv_A 198 IARGVIVLD 206 (251)
T ss_dssp GCSEEEEEE
T ss_pred eeeEEEEEe
Confidence 8 9999995
No 94
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.75 E-value=3e-19 Score=186.92 Aligned_cols=181 Identities=16% Similarity=0.136 Sum_probs=118.0
Q ss_pred EeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh-hHHHHHHHHHHHHHh
Q psy11936 163 VNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA-DVKRTELLAECAKLE 241 (548)
Q Consensus 163 ~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 241 (548)
..+||++.+|++++||||||||||||+++|+|. ..+.+|+|.+.+.++.... ...+.... ......++.+. .
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~--l~~~~G~V~l~g~D~~r~~--a~eql~~~~~r~~i~~v~q~---~ 220 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR--LKNEGTKVLMAAGDTFRAA--ASDQLEIWAERTGCEIVVAE---G 220 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHH--HHHTTCCEEEECCCCSCHH--HHHHHHHHHHHHTCEEECCS---S
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhh--ccccCCEEEEecccccccc--hhHHHHHHHHhcCeEEEEec---c
Confidence 468899999999999999999999999999985 3466789998887653211 00000000 00000000000 0
Q ss_pred h-hcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCC--EEEEeC
Q psy11936 242 A-ADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPT--LLLLDE 318 (548)
Q Consensus 242 ~-~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~--lLLLDE 318 (548)
. ..+..++.+++... . ..+ .. ..+++.+|+.+ ..++++.+|| +||++|||||+.+|+ +|+||
T Consensus 221 ~~~~p~~tv~e~l~~~---~-~~~-~d-----~~lldt~Gl~~-~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD- 285 (359)
T 2og2_A 221 DKAKAATVLSKAVKRG---K-EEG-YD-----VVLCDTSGRLH-TNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD- 285 (359)
T ss_dssp SSCCHHHHHHHHHHHH---H-HTT-CS-----EEEEECCCCSS-CCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-
T ss_pred cccChhhhHHHHHHHH---H-hCC-CH-----HHHHHhcCCCh-hhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-
Confidence 0 00011222222110 0 011 11 12456677763 4567788999 999999999999999 99999
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCeEEEEec---------CHHHHHhhcCEEEEEeCCEE
Q psy11936 319 PTNHLDLNAVIWLDNYLQGWKKTLLIVSH---------DQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 319 PTn~LD~~s~~~L~~~L~~~~~TvIiVSH---------D~~~l~~vadrIi~L~~G~i 367 (548)
||++||+..+. ..+-...+.|+|++|| .+..+..++..|.++..|+.
T Consensus 286 pttglD~~~~~--~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 286 GNTGLNMLPQA--REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGGGGGHHHH--HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCCCCCHHHHH--HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 99999987653 3444456889999999 56777778899999998864
No 95
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.74 E-value=3.4e-20 Score=199.20 Aligned_cols=186 Identities=16% Similarity=0.150 Sum_probs=123.0
Q ss_pred ccEEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 145 VDIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 145 ~~I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
..++++++++.|+ +..+|+++ |+|.+|+++||+|||||||||||++|+|. ..+..|.|.+.++.. ..+...
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~--~~~~~G~i~~~G~r~-----~ev~~~ 201 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARY--TRADVIVVGLIGERG-----REVKDF 201 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHH--SCCSEEEEEEESCCH-----HHHHHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcc--cCCCeEEEEEeceec-----HHHHHH
Confidence 3578899999997 67899999 99999999999999999999999999985 457778888877621 001110
Q ss_pred HHhhHHHHHHHHHHHHHhhhcC-Ch------hHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCC-hhhhhcccCCCCH
Q psy11936 224 LKADVKRTELLAECAKLEAADF-SS------EQQEQLKEIYEELKAIGADSAEPRARRILAGLGFS-RAMQDRATKNFSG 295 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~-~~------~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~-~~~~~~~~~~LSG 295 (548)
....... ..+.. ....... +. ++.++.....+.+. ..+-. ..+. ..+..|||
T Consensus 202 ~~~~~~~-~~l~r--~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~----------------~~~~~v~~~l-d~l~~lS~ 261 (438)
T 2dpy_A 202 IENILGP-DGRAR--SVVIAAPADVSPLLRMQGAAYATRIAEDFR----------------DRGQHVLLIM-DSLTRYAM 261 (438)
T ss_dssp HHTTTHH-HHHHT--EEEEEECTTSCHHHHHHHHHHHHHHHHHHH----------------TTTCEEEEEE-ECHHHHHH
T ss_pred HHhhccc-cccCc--eEEEEECCCCCHHHHHHHHHHHHHHHHHHH----------------hCCCCHHHHH-HhHHHHHH
Confidence 0000000 00000 0000000 01 11111111111111 00100 0111 22567999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC------C------eEEEEecCHHHHHhhcCEEEEEe
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK------K------TLLIVSHDQSFLDNVCNEIIHLD 363 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~------~------TvIiVSHD~~~l~~vadrIi~L~ 363 (548)
|| |||+|| +.+|++ |++||+.....+.+++.++. + ||+++|||++ ..+||++++|.
T Consensus 262 g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~ 329 (438)
T 2dpy_A 262 AQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAIL 329 (438)
T ss_dssp HH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHS
T ss_pred HH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEe
Confidence 99 999999 888888 99999999999999997652 3 8999999998 67899999999
Q ss_pred CCEEEEE
Q psy11936 364 QQKLYYY 370 (548)
Q Consensus 364 ~G~i~~~ 370 (548)
+|+++..
T Consensus 330 dG~Ivl~ 336 (438)
T 2dpy_A 330 DGHIVLS 336 (438)
T ss_dssp SEEEEEC
T ss_pred CcEEEEe
Confidence 9999864
No 96
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.74 E-value=5.6e-18 Score=163.89 Aligned_cols=73 Identities=16% Similarity=0.210 Sum_probs=47.4
Q ss_pred CCHHHHH-HHHHHHHHcc-------CCCEEEEeCCCCCCCHH----------------HHHHHHHHHhhcCCeEEEEec-
Q psy11936 293 FSGGWRM-RVSLARALYI-------EPTLLLLDEPTNHLDLN----------------AVIWLDNYLQGWKKTLLIVSH- 347 (548)
Q Consensus 293 LSGGqkq-RvaLAraL~~-------~P~lLLLDEPTn~LD~~----------------s~~~L~~~L~~~~~TvIiVSH- 347 (548)
+++++++ .+..++.++. +|++|+|||||++||+. ....|.++.++.+.|||+|||
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~ 179 (231)
T 4a74_A 100 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 179 (231)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 4444433 3555555554 99999999999999983 122333444456889999999
Q ss_pred ---CHHHHHhhcCEEEEEeCC
Q psy11936 348 ---DQSFLDNVCNEIIHLDQQ 365 (548)
Q Consensus 348 ---D~~~l~~vadrIi~L~~G 365 (548)
+-..+..+||++++|++|
T Consensus 180 ~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 180 QANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp C---------CCSEEEEEEEC
T ss_pred ccCcchhhHhhceEEEEEEec
Confidence 555588999999999864
No 97
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.72 E-value=6.9e-18 Score=192.14 Aligned_cols=146 Identities=21% Similarity=0.167 Sum_probs=100.1
Q ss_pred cEEEEeEEEEe---CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISA---KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y---~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
.|.+++...-. ++..+++|+||+ |++++|+||||||||||||+|+|... .+..|.+. ... ..
T Consensus 550 ~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~-~~~~G~~v--pa~----~~----- 614 (765)
T 1ewq_A 550 RLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIAL-LAQVGSFV--PAE----EA----- 614 (765)
T ss_dssp SEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHH-HHTTTCCB--SSS----EE-----
T ss_pred cEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhh-hcccCcee--ehh----cc-----
Confidence 47777774433 456789999999 99999999999999999999997421 12222110 000 00
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
..+++ + .++..++..+ .....+|+|+++++.
T Consensus 615 -------~i~~v----------~----------------------------~i~~~~~~~d----~l~~g~S~~~~e~~~ 645 (765)
T 1ewq_A 615 -------HLPLF----------D----------------------------GIYTRIGASD----DLAGGKSTFMVEMEE 645 (765)
T ss_dssp -------EECCC----------S----------------------------EEEEECCC----------CCSHHHHHHHH
T ss_pred -------ceeeH----------H----------------------------HhhccCCHHH----HHHhcccHHHHHHHH
Confidence 00000 0 0011122221 112358999999999
Q ss_pred HHHHH--ccCCCEEEEeCC---CCCCCHHHHH-HHHHHHhhcCCeEEEEecCHHHHHhhc
Q psy11936 303 LARAL--YIEPTLLLLDEP---TNHLDLNAVI-WLDNYLQGWKKTLLIVSHDQSFLDNVC 356 (548)
Q Consensus 303 LAraL--~~~P~lLLLDEP---Tn~LD~~s~~-~L~~~L~~~~~TvIiVSHD~~~l~~va 356 (548)
+|++| +.+|+||||||| |++||..+.. .+.++|.+.+.|+|++|||.+++. +|
T Consensus 646 la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~-~~ 704 (765)
T 1ewq_A 646 VALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA-LG 704 (765)
T ss_dssp HHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT-CC
T ss_pred HHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hh
Confidence 99999 999999999999 9999998864 588888877889999999998864 44
No 98
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.72 E-value=7.4e-18 Score=162.78 Aligned_cols=168 Identities=17% Similarity=0.172 Sum_probs=103.1
Q ss_pred ceeeEeeeE-EEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHH
Q psy11936 159 NDLFVNANL-LIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAEC 237 (548)
Q Consensus 159 ~~iL~~vsl-~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~ 237 (548)
...|+++.+ .|.+|++++|+||||||||||+++|++.. .+.++.+.|.+.+.. ...+... .
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~--~~~~~~v~~~~~~~~---~~~~~~~-------------~ 70 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKG--LRDGDPCIYVTTEES---RDSIIRQ-------------A 70 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHH--HHHTCCEEEEESSSC---HHHHHHH-------------H
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHH--HHCCCeEEEEEcccC---HHHHHHH-------------H
Confidence 346788877 79999999999999999999999999742 234566777654321 1110000 0
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCC--EEE
Q psy11936 238 AKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPT--LLL 315 (548)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~--lLL 315 (548)
.... ..+..... ..+..... +...++ . .......|.++.++...+.+...+|+ +||
T Consensus 71 ~~~~-~~~~~~~~-------~~~~~~~~---------~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~lli 128 (235)
T 2w0m_A 71 KQFN-WDFEEYIE-------KKLIIIDA---------LMKEKE-D----QWSLVNLTPEELVNKVIEAKQKLGYGKARLV 128 (235)
T ss_dssp HHTT-CCCGGGBT-------TTEEEEEC---------CC-----C----TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEE
T ss_pred HHhc-chHHHHhh-------CCEEEEec---------cccccC-c----eeeecCCCHHHHHHHHHHHHHhhCCCceEEE
Confidence 0000 00000000 00000000 000001 0 01123459999999988888888999 999
Q ss_pred EeCCCCCC--CHHHHHHHHHHHh----hcCCeEEEEecCH--------HHHHhhcCEEEEEeCCE
Q psy11936 316 LDEPTNHL--DLNAVIWLDNYLQ----GWKKTLLIVSHDQ--------SFLDNVCNEIIHLDQQK 366 (548)
Q Consensus 316 LDEPTn~L--D~~s~~~L~~~L~----~~~~TvIiVSHD~--------~~l~~vadrIi~L~~G~ 366 (548)
|||||+.+ |+.....+.+.|. +.+.|||++||+. ..+..+||+|++|+...
T Consensus 129 lDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 129 IDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp EETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred EECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 99999888 9866665555554 4578999999999 55888999999997543
No 99
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.70 E-value=2.4e-19 Score=179.97 Aligned_cols=138 Identities=17% Similarity=0.175 Sum_probs=96.9
Q ss_pred EEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCC-CeEEEEeceeeccCchhHHHHHHHh
Q psy11936 148 KVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPP-NIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 148 ~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~-~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
++++|++. .+|+++| +.+|++++|+|||||||||||++|+|. ..|. +|.|.+.+..+......
T Consensus 7 ~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~~i~~~~~~-------- 70 (261)
T 2eyu_A 7 EFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYVFKH-------- 70 (261)
T ss_dssp CGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEESSCCSCCCC--------
T ss_pred ChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCCcceeecCC--------
Confidence 34555542 5899999 899999999999999999999999984 2344 78888877654211000
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
. ... ... ..+|+.. ..| |++||++
T Consensus 71 ----------------~-~~~---------------v~q-----------~~~gl~~-------~~l------~~~la~a 94 (261)
T 2eyu_A 71 ----------------K-KSI---------------VNQ-----------REVGEDT-------KSF------ADALRAA 94 (261)
T ss_dssp ----------------S-SSE---------------EEE-----------EEBTTTB-------SCH------HHHHHHH
T ss_pred ----------------c-cee---------------eeH-----------HHhCCCH-------HHH------HHHHHHH
Confidence 0 000 000 0233321 222 8999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEE
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHL 362 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L 362 (548)
|..+|++||||||| |+.+...+.+.. ..+.+||++||+.+ +..+||++++|
T Consensus 95 L~~~p~illlDEp~---D~~~~~~~l~~~-~~g~~vl~t~H~~~-~~~~~dri~~l 145 (261)
T 2eyu_A 95 LREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNT-AIDTIHRIVDI 145 (261)
T ss_dssp HHHCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEECCSS-HHHHHHHHHHT
T ss_pred HhhCCCEEEeCCCC---CHHHHHHHHHHH-ccCCEEEEEeCcch-HHHHHHHHhhh
Confidence 99999999999999 998877666654 34789999999987 44667776544
No 100
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.70 E-value=2.9e-18 Score=169.68 Aligned_cols=165 Identities=12% Similarity=0.064 Sum_probs=86.5
Q ss_pred EeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcC-CCCCC--CCeEEEEeceeeccCchhHHHHHHHhhHHHH
Q psy11936 155 SAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR-DLKVP--PNIDILYCEQEVVADDLTAVESVLKADVKRT 231 (548)
Q Consensus 155 ~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~-~~~~~--~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~ 231 (548)
+-++..+|+|+||++.+|+++||+||||||||||+++|+|. +...- ....+.+..++......+... .
T Consensus 8 ~~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~-~-------- 78 (245)
T 2jeo_A 8 SSGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQ-K-------- 78 (245)
T ss_dssp ---------------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHH-H--------
T ss_pred cCCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhH-h--------
Confidence 34567899999999999999999999999999999999984 21100 011233433332111111100 0
Q ss_pred HHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCC
Q psy11936 232 ELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEP 311 (548)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P 311 (548)
.... .....+... .......+.+.|..+. .....++..||+||+||+++ ++++.+|
T Consensus 79 --~~~~--~~~~~~~~~----------------~~~~~~~~~~~L~~l~---~~~~~~~~~ls~g~~~r~~~-~~~~~~~ 134 (245)
T 2jeo_A 79 --AKAL--KGQYNFDHP----------------DAFDNDLMHRTLKNIV---EGKTVEVPTYDFVTHSRLPE-TTVVYPA 134 (245)
T ss_dssp --HHHH--TTCCCTTSG----------------GGBCHHHHHHHHHHHH---TTCCEEECCEETTTTEECSS-CEEECCC
T ss_pred --hhhh--ccCCCCCCc----------------ccccHHHHHHHHHHHH---CCCCeecccccccccCccCc-eEEecCC
Confidence 0000 000000000 0001223334444331 22356788999999999988 6888999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecC-HHHHHhhcCEE
Q psy11936 312 TLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHD-QSFLDNVCNEI 359 (548)
Q Consensus 312 ~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD-~~~l~~vadrI 359 (548)
+++|||||+..+|.. +.+ -.+.+|+++||+ ......+++++
T Consensus 135 ~~lilDg~~~~~~~~----l~~---~~~~~i~v~th~~~~~~r~~~r~~ 176 (245)
T 2jeo_A 135 DVVLFEGILVFYSQE----IRD---MFHLRLFVDTDSDVRLSRRVLRDV 176 (245)
T ss_dssp SEEEEECTTTTTSHH----HHT---TCSEEEEEECCHHHHHHHHHHHHT
T ss_pred CEEEEeCccccccHH----HHH---hcCeEEEEECCHHHHHHHHHHHHH
Confidence 999999999888864 211 136799999997 44445555544
No 101
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.69 E-value=7.4e-19 Score=168.23 Aligned_cols=86 Identities=10% Similarity=0.096 Sum_probs=65.6
Q ss_pred hcccCCCCHHHHHHH-HHHH---HHccCCCEEEEeC--CCCCCCHHHHHHHHHHHhhcCCeEE---EEecCH--HHHHhh
Q psy11936 287 DRATKNFSGGWRMRV-SLAR---ALYIEPTLLLLDE--PTNHLDLNAVIWLDNYLQGWKKTLL---IVSHDQ--SFLDNV 355 (548)
Q Consensus 287 ~~~~~~LSGGqkqRv-aLAr---aL~~~P~lLLLDE--PTn~LD~~s~~~L~~~L~~~~~TvI---iVSHD~--~~l~~v 355 (548)
.++...+||||++++ +|++ |++.+|+|||||| ||+++|......|.+++..+..+|| .||||+ .|++++
T Consensus 78 ~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~~ilgti~vsh~~~~~~vd~i 157 (189)
T 2i3b_A 78 GQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEI 157 (189)
T ss_dssp SSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSCCTTHHHH
T ss_pred ceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCcEEEEEeecCCCCchHHHHHH
Confidence 445567999999998 4455 6899999999999 9999999999999999987755553 456997 777776
Q ss_pred cCEEEEEeCCEEEEEc-CCHHH
Q psy11936 356 CNEIIHLDQQKLYYYK-GNYSM 376 (548)
Q Consensus 356 adrIi~L~~G~i~~~~-g~y~~ 376 (548)
|+ +.+|+|+... .|.+.
T Consensus 158 ~~----~~~~~i~~~~~~nr~~ 175 (189)
T 2i3b_A 158 RN----RKDVKVFNVTKENRNH 175 (189)
T ss_dssp HT----TCCSEEEECCSSSGGG
T ss_pred ee----cCCcEEEEeChHhHHH
Confidence 65 4677776543 45443
No 102
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.69 E-value=2.1e-16 Score=149.19 Aligned_cols=94 Identities=17% Similarity=0.221 Sum_probs=80.3
Q ss_pred hcccCCCCHHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEE
Q psy11936 287 DRATKNFSGGWRMRVSLARALYI----EPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEII 360 (548)
Q Consensus 287 ~~~~~~LSGGqkqRvaLAraL~~----~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi 360 (548)
.+++..||||||||++||++|+. +|++|||||||++||+.++..+.++|..+ ..++|+|||+...+ .+||+++
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~i~ 137 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADKII 137 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEE
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCEEE
Confidence 46678999999999999999974 57999999999999999999999999876 36999999998765 6899998
Q ss_pred EE--eCCEEEEEcCCHHHHHHHH
Q psy11936 361 HL--DQQKLYYYKGNYSMFKKMY 381 (548)
Q Consensus 361 ~L--~~G~i~~~~g~y~~f~~~~ 381 (548)
.+ .+|....+..+++.+.+.+
T Consensus 138 ~v~~~~g~s~~~~~~~~~~~~~~ 160 (173)
T 3kta_B 138 GVSMRDGVSKVVSLSLEKAMKIL 160 (173)
T ss_dssp EEEEETTEEEEEECCHHHHHHHH
T ss_pred EEEecCCEEEEEEEEcHHHHHHH
Confidence 55 5888887888887765444
No 103
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.66 E-value=4.1e-19 Score=179.17 Aligned_cols=149 Identities=12% Similarity=0.099 Sum_probs=79.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHH
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQL 253 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 253 (548)
.+||||||||||||||++|+|. ..|..|.|.+.+.++...... ...+++.+... .....++.+++
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~--~~~~~G~i~~~g~~i~~~~~~----------~~i~~v~q~~~---~~~~ltv~d~~ 68 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS--QVSRKASSWNREEKIPKTVEI----------KAIGHVIEEGG---VKMKLTVIDTP 68 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HC------------CCCCCSC----------CEEEESCC-------CCEEEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCCCccccCCcccCcceee----------eeeEEEeecCC---CcCCceEEech
Confidence 4899999999999999999985 356778777776654211000 00000000000 00000100000
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q psy11936 254 KEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDN 333 (548)
Q Consensus 254 ~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~ 333 (548)
.. ............+..++. ....+..+.+|||||+|||+||||++. ++||||||++||+.....+.
T Consensus 69 ~~----g~~~~~~~~~~~i~~~~~-----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~~l~- 135 (270)
T 3sop_A 69 GF----GDQINNENCWEPIEKYIN-----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLEFMK- 135 (270)
T ss_dssp C------CCSBCTTCSHHHHHHHH-----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHHHHH-
T ss_pred hh----hhhcccHHHHHHHHHHHH-----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHHHHH-
Confidence 00 000001111122333333 234566788999999999999999987 99999999999998855544
Q ss_pred HHhhcCCeEEEEecCHHH
Q psy11936 334 YLQGWKKTLLIVSHDQSF 351 (548)
Q Consensus 334 ~L~~~~~TvIiVSHD~~~ 351 (548)
.|... .+||+|.|..+.
T Consensus 136 ~L~~~-~~vI~Vi~K~D~ 152 (270)
T 3sop_A 136 HLSKV-VNIIPVIAKADT 152 (270)
T ss_dssp HHHTT-SEEEEEETTGGG
T ss_pred HHHhc-CcEEEEEecccc
Confidence 44444 889998887543
No 104
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.65 E-value=3.7e-16 Score=157.36 Aligned_cols=142 Identities=19% Similarity=0.238 Sum_probs=87.5
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHcCCCCC---------CCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHH
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIASRDLKV---------PPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECA 238 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~---------~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 238 (548)
.|.+|++++|+||||||||||++.|++. +.. ...+.+.|...+- ....+. .
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~-~~~g~~~~g~~~~~~~~v~~~~~e~---~~~~~~-------------~--- 85 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQ-IAGGPDLLEVGELPTGPVIYLPAED---PPTAIH-------------H--- 85 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHH-HHTCCCTTCCCCCCCCCEEEEESSS---CHHHHH-------------H---
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHH-HhcCCCcCCCccCCCccEEEEECCC---CHHHHH-------------H---
Confidence 3789999999999999999999999863 111 0123444433211 100000 0
Q ss_pred HHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q psy11936 239 KLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDE 318 (548)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDE 318 (548)
.+..++.......+..+++.+++.. ..++++..||+|+.+++ ++++.+|++|||||
T Consensus 86 --------------------r~~~~g~~~~~~~~~~~~~~l~l~~-~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe 141 (279)
T 1nlf_A 86 --------------------RLHALGAHLSAEERQAVADGLLIQP-LIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDT 141 (279)
T ss_dssp --------------------HHHHHHTTSCHHHHHHHHHHEEECC-CTTSCCCTTSHHHHHHH---HHHHTTCSEEEEEC
T ss_pred --------------------HHHHHHhhcChhhhhhccCceEEee-cCCCCcccCCHHHHHHH---HHhcCCCCEEEECC
Confidence 0000001111223445667777753 35678899999997765 68888999999999
Q ss_pred CCC--CCCHHH---HHHHHHHH----hhcCCeEEEEecCHHHHH
Q psy11936 319 PTN--HLDLNA---VIWLDNYL----QGWKKTLLIVSHDQSFLD 353 (548)
Q Consensus 319 PTn--~LD~~s---~~~L~~~L----~~~~~TvIiVSHD~~~l~ 353 (548)
||+ ++|... ...+...| ++.+.|||+|||+.....
T Consensus 142 ~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 142 LRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGAA 185 (279)
T ss_dssp GGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-----
T ss_pred HHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCccc
Confidence 999 999732 24444443 455789999999987653
No 105
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.64 E-value=1.4e-15 Score=146.12 Aligned_cols=149 Identities=17% Similarity=0.122 Sum_probs=94.8
Q ss_pred eeEeeeE-EEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHH
Q psy11936 161 LFVNANL-LIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAK 239 (548)
Q Consensus 161 iL~~vsl-~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (548)
.|+.+.. .|.+|++++|+||||||||||++.|++ ...+.+.|...+... ....+.. +
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~-~~~~~~~----------~------ 65 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGF-SPERLVQ----------M------ 65 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCC-CHHHHHH----------H------
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCC-CHHHHHH----------H------
Confidence 3455544 588999999999999999999999997 223455554432110 0000000 0
Q ss_pred HhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHH--HHHHHHHHHHccC-CCEEEE
Q psy11936 240 LEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGW--RMRVSLARALYIE-PTLLLL 316 (548)
Q Consensus 240 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq--kqRvaLAraL~~~-P~lLLL 316 (548)
....+. .. ..++. +-.+..+|+++ +++++.+++++.+ |++||+
T Consensus 66 --------------------~~~~~~-~~----~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~llii 111 (220)
T 2cvh_A 66 --------------------AETRGL-NP----EEALS---------RFILFTPSDFKEQRRVIGSLKKTVDSNFALVVV 111 (220)
T ss_dssp --------------------HHTTTC-CH----HHHHH---------HEEEECCTTTSHHHHHHHHHHHHCCTTEEEEEE
T ss_pred --------------------HHhcCC-Ch----HHHhh---------cEEEEecCCHHHHHHHHHHHHHHhhcCCCEEEE
Confidence 000000 00 01111 11344566664 5688888899986 999999
Q ss_pred eCCCCCCCHH--------HHHH----HHHHHhhcCCeEEEEecCHH-------------HHHhhcCEEEEEeCC
Q psy11936 317 DEPTNHLDLN--------AVIW----LDNYLQGWKKTLLIVSHDQS-------------FLDNVCNEIIHLDQQ 365 (548)
Q Consensus 317 DEPTn~LD~~--------s~~~----L~~~L~~~~~TvIiVSHD~~-------------~l~~vadrIi~L~~G 365 (548)
||||+.||.. .... |.++.++++.|||+++|... .+..+||.|++|+..
T Consensus 112 D~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 112 DSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp ECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred cCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9999999962 2222 34444556889999999865 677899999999754
No 106
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.63 E-value=1.8e-16 Score=181.33 Aligned_cols=154 Identities=19% Similarity=0.162 Sum_probs=94.2
Q ss_pred cEEEEeEEEEe-----CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCC------CCCCC-eEEEEeceeec
Q psy11936 146 DIKVENFSISA-----KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDL------KVPPN-IDILYCEQEVV 213 (548)
Q Consensus 146 ~I~l~nls~~y-----~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~------~~~~~-g~I~~~~q~i~ 213 (548)
.|.+++...-. ++..+++|+||+ .+|++++|+||||||||||||+|+|..+ ..|.. ..+.+..+
T Consensus 577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~--- 652 (800)
T 1wb9_A 577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDR--- 652 (800)
T ss_dssp CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCE---
T ss_pred CEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHH---
Confidence 36666543221 456789999999 9999999999999999999999997411 01110 01111100
Q ss_pred cCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCC
Q psy11936 214 ADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNF 293 (548)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~L 293 (548)
++..+|..+ ......+++
T Consensus 653 -------------------------------------------------------------i~~~~~~~d-~l~~~~stf 670 (800)
T 1wb9_A 653 -------------------------------------------------------------IFTRVGAAD-DLASGRSTF 670 (800)
T ss_dssp -------------------------------------------------------------EEEEEC------------C
T ss_pred -------------------------------------------------------------HHhhCCHHH-HHHhhhhhh
Confidence 001111111 112223467
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH---HH-HHHHHHHhh-cCCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN---AV-IWLDNYLQG-WKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~---s~-~~L~~~L~~-~~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
|+|+++ ++.+..++.+|+||||||||+|+|+. +. ..+.+.+.+ .+.++|++|||.++. .+||++..+.+|++
T Consensus 671 ~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~-~l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 671 MVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT-QLPEKMEGVANVHL 747 (800)
T ss_dssp HHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHSTTEEEEEE
T ss_pred hHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHH-HHhhhhhceEEEEE
Confidence 877764 45555579999999999998887764 32 334555555 478999999999876 47887644444443
No 107
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.63 E-value=1.7e-18 Score=177.17 Aligned_cols=166 Identities=14% Similarity=0.154 Sum_probs=73.5
Q ss_pred EeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHH
Q psy11936 150 ENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVK 229 (548)
Q Consensus 150 ~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~ 229 (548)
.||++.|+++.++++++|+| +|||+||||||||+++|+|.. ..|.+| +.+.+..+.. . ... .......+
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~-~~~~~g-i~~~g~~~~~-t-~~~-~~~~~~~q 70 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD-LYPERV-ISGAAEKIER-T-VQI-EASTVEIE 70 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC-----------------------------CEEEEC
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCC-ccCCCC-cccCCcccCC-c-ceE-eeEEEEec
Confidence 47999999999999999998 999999999999999999852 234444 4333322210 0 000 00000000
Q ss_pred HHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHcc
Q psy11936 230 RTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYI 309 (548)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~ 309 (548)
.. ......++.+.... ..... . ..+...++.. +. ...+.++.++|||+|||+.+|||++
T Consensus 71 -------~~---~~~~~ltv~Dt~g~-~~~~~---~---~e~~~~l~~~--l~-~~~~~~~~~~sgg~rqrv~~ara~~- 129 (301)
T 2qnr_A 71 -------ER---GVKLRLTVVDTPGY-GDAIN---C---RDCFKTIISY--ID-EQFERYLHDESGLNRRHIIDNRVHC- 129 (301)
T ss_dssp -------------CCEEEEEEEEC------------------CTTHHHH--HH-HHHHHHHHHHTSSCCTTCCCCCCCE-
T ss_pred -------CC---CcccCcchhhhhhh-hhhcC---c---HHHHHHHHHH--HH-HHHHHHHHHhCHHhhhhhhhhhhhh-
Confidence 00 00000000000000 00000 0 0000011111 11 2345778899999999999999986
Q ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHHHhhcCCeEEEEecCHH
Q psy11936 310 EPTLLLLDEPTNH-LDLNAVIWLDNYLQGWKKTLLIVSHDQS 350 (548)
Q Consensus 310 ~P~lLLLDEPTn~-LD~~s~~~L~~~L~~~~~TvIiVSHD~~ 350 (548)
||++||||++ ||+.....+..+-...+.++|+++||+.
T Consensus 130 ---ll~ldePt~~~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 130 ---CFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp ---EEEEECSSSSSCCHHHHHHHHHHTTTSCEEEEECCGGGS
T ss_pred ---eeeeecCcccCCCHHHHHHHHHHHhcCCEEEEEEeCCCC
Confidence 9999999986 9998864444432234578899999974
No 108
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.61 E-value=2.2e-17 Score=157.64 Aligned_cols=176 Identities=11% Similarity=0.088 Sum_probs=95.7
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCC---CCCCeEEEEe------c-eeecc-
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK---VPPNIDILYC------E-QEVVA- 214 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~---~~~~g~I~~~------~-q~i~~- 214 (548)
+|+++||++.|+ ..++++ |.+.+|.+++|+|+||||||||++.|+|.... .|..|.+.+. + ..+..
T Consensus 3 ~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt 79 (210)
T 1pui_A 3 NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDL 79 (210)
T ss_dssp --------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEEC
T ss_pred chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEEC
Confidence 478999999997 467777 88999999999999999999999999985310 2333433221 1 11110
Q ss_pred Cchh--HHHHHHHhhHH-HHHHHHHH-HHHhhhc--CChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhc
Q psy11936 215 DDLT--AVESVLKADVK-RTELLAEC-AKLEAAD--FSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDR 288 (548)
Q Consensus 215 ~~~~--~~~~~~~~~~~-~~~l~~~~-~~~~~~~--~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~ 288 (548)
.+.. .........+. ......+. ....... .+.. .........+..++...++.......
T Consensus 80 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~--------------~~~~~~~~~~~~~~~~~~~~~~~v~n 145 (210)
T 1pui_A 80 PGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIR--------------HPLKDLDQQMIEWAVDSNIAVLVLLT 145 (210)
T ss_dssp CCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETT--------------SCCCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECC--------------CCCchhHHHHHHHHHHcCCCeEEEEe
Confidence 0000 00000000000 00000000 0000000 0000 00011122345566677776433456
Q ss_pred ccCCCCHHHHHH-HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc
Q psy11936 289 ATKNFSGGWRMR-VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW 338 (548)
Q Consensus 289 ~~~~LSGGqkqR-vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~ 338 (548)
++..+|+||+|| +.++++++.+|.++++|||||+||..++..+.++|.++
T Consensus 146 K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 146 KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence 678899999999 89999999999999999999999999988888887653
No 109
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.59 E-value=1.4e-15 Score=166.51 Aligned_cols=77 Identities=21% Similarity=0.250 Sum_probs=69.9
Q ss_pred cccCCC-CHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEE
Q psy11936 288 RATKNF-SGGWRMRVSLARALYIEP--TLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHL 362 (548)
Q Consensus 288 ~~~~~L-SGGqkqRvaLAraL~~~P--~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L 362 (548)
+++..| ||||+|||+||++|+.+| ++|||||||+|||+.+...+.++|..+ +.|||+||||+.++. +||++++|
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~~ 470 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKV 470 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEE
Confidence 466778 999999999999999999 999999999999999999999888765 589999999999886 69999999
Q ss_pred eCC
Q psy11936 363 DQQ 365 (548)
Q Consensus 363 ~~G 365 (548)
.++
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 654
No 110
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.57 E-value=1.9e-18 Score=166.04 Aligned_cols=145 Identities=17% Similarity=0.061 Sum_probs=94.7
Q ss_pred EECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChh
Q psy11936 169 IANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSE 248 (548)
Q Consensus 169 I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 248 (548)
..+|+++||+||||||||||+++|+|.. .| .+.+..++.......... ..... ...+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~--~~---~i~~v~~d~~~~~~~~~~-----------~~~~~----~~~~~-- 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTL--GE---RVALLPMDHYYKDLGHLP-----------LEERL----RVNYD-- 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHH--GG---GEEEEEGGGCBCCCTTSC-----------HHHHH----HSCTT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHh--CC---CeEEEecCccccCccccc-----------HHHhc----CCCCC--
Confidence 5789999999999999999999999841 11 355555543222110000 00000 00000
Q ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHH----HHHHHHHHHccCCCEEEEeCCCCC--
Q psy11936 249 QQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWR----MRVSLARALYIEPTLLLLDEPTNH-- 322 (548)
Q Consensus 249 ~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqk----qRvaLAraL~~~P~lLLLDEPTn~-- 322 (548)
........++.+++..+++.. ..++++..+|+|++ ||+++|++++.+|.+|++||||++
T Consensus 61 --------------~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~ 125 (211)
T 3asz_A 61 --------------HPDAFDLALYLEHAQALLRGL-PVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLM 125 (211)
T ss_dssp --------------SGGGBCHHHHHHHHHHHHTTC-CEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTC
T ss_pred --------------ChhhhhHHHHHHHHHHHHcCC-CcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhc
Confidence 000112334555666666653 34668889999974 788999999999999999999999
Q ss_pred -----CCHHHHHHHHHHHhhc----CCeEEEEecCHH
Q psy11936 323 -----LDLNAVIWLDNYLQGW----KKTLLIVSHDQS 350 (548)
Q Consensus 323 -----LD~~s~~~L~~~L~~~----~~TvIiVSHD~~ 350 (548)
||+.....+.+.+.+. +.|+++++|+..
T Consensus 126 d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 126 DLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 8988777777766543 679999999853
No 111
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.55 E-value=3.8e-15 Score=155.45 Aligned_cols=158 Identities=16% Similarity=0.084 Sum_probs=86.8
Q ss_pred eeEee-eEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCC----eE-EEEeceeeccCchhHHHHHHHhhHHHHHHH
Q psy11936 161 LFVNA-NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN----ID-ILYCEQEVVADDLTAVESVLKADVKRTELL 234 (548)
Q Consensus 161 iL~~v-sl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~----g~-I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~ 234 (548)
.|+.+ ++.|.+|++++|+||||||||||+++|++.....|.. |. +++.+.+.. ... +..++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~--~~~-----------~i~~i 185 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--RPE-----------RIREI 185 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC--CHH-----------HHHHH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC--CHH-----------HHHHH
Confidence 45554 6899999999999999999999999999853223333 56 444433221 000 00011
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHc------
Q psy11936 235 AECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALY------ 308 (548)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~------ 308 (548)
.+. .... .. .+++.+-+. . ..-|+++.+++.++++++
T Consensus 186 ~q~-----~~~~---------------------~~----~v~~ni~~~-----~--~~~~~~~~~~l~~~~~~~~~lS~G 228 (349)
T 1pzn_A 186 AQN-----RGLD---------------------PD----EVLKHIYVA-----R--AFNSNHQMLLVQQAEDKIKELLNT 228 (349)
T ss_dssp HHT-----TTCC---------------------HH----HHGGGEEEE-----E--CCSHHHHHHHHHHHHHHHHHSSSS
T ss_pred HHH-----cCCC---------------------HH----HHhhCEEEE-----e--cCChHHHHHHHHHHHHHHHHhccc
Confidence 100 0000 00 111111110 0 012577888888888888
Q ss_pred -cCCCEEEEeCCCCCCCHHH------------HHHHHHHH----hhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy11936 309 -IEPTLLLLDEPTNHLDLNA------------VIWLDNYL----QGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLY 368 (548)
Q Consensus 309 -~~P~lLLLDEPTn~LD~~s------------~~~L~~~L----~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~ 368 (548)
.+|++||+||||++||+.. ...+...| +.++.|||+++|+......++..++....|.+.
T Consensus 229 ~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l 305 (349)
T 1pzn_A 229 DRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHIL 305 (349)
T ss_dssp SSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCC
T ss_pred cCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceE
Confidence 6899999999999999851 23333333 345789999999987665444445555556544
No 112
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.55 E-value=2.7e-16 Score=164.51 Aligned_cols=57 Identities=18% Similarity=0.210 Sum_probs=49.6
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEe
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLD 363 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~ 363 (548)
+||+||.++|++||||||| |.++...+.+... .+.|||+++|+.+.+ .+|||++.|.
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~~~~~~~~-~G~~vl~t~H~~~~~-~~~dRli~l~ 244 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIRLALTAAE-TGHLVFGTLHTTSAA-KTIDRVVDVF 244 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHHHHHHHH-TTCEEEEEESCSSHH-HHHHHHHHTS
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHHHHHHHHh-cCCEEEEEEccChHH-HHHHHHhhhc
Confidence 9999999999999999999 8888777766643 478999999999988 6799998874
No 113
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.50 E-value=6e-14 Score=147.27 Aligned_cols=75 Identities=32% Similarity=0.476 Sum_probs=67.7
Q ss_pred cccCCCCHHHHHHH------HHHHHHccC-CCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CeEEEEecCHHHHHhhcCE
Q psy11936 288 RATKNFSGGWRMRV------SLARALYIE-PTLLLLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIVSHDQSFLDNVCNE 358 (548)
Q Consensus 288 ~~~~~LSGGqkqRv------aLAraL~~~-P~lLLLDEPTn~LD~~s~~~L~~~L~~~~--~TvIiVSHD~~~l~~vadr 358 (548)
.++..|||||+||| ++|++|+.+ |++|||||||++||+..+..+.++|..+. .+||+||||.. +..+||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence 56789999999988 567899999 99999999999999999999999998763 59999999987 5689999
Q ss_pred EEEEe
Q psy11936 359 IIHLD 363 (548)
Q Consensus 359 Ii~L~ 363 (548)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 114
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.49 E-value=3e-13 Score=131.71 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=26.2
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
-|.+|++++|+||||||||||++.|++.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4889999999999999999999999984
No 115
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.46 E-value=1.5e-14 Score=154.17 Aligned_cols=163 Identities=12% Similarity=0.112 Sum_probs=84.6
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEece-eeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQ-EVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q-~i~~~~~~~~~~~~ 224 (548)
+|.++||+++|+++.+++++||+| +|||+||||||||+++|+|...+.++.+.+..... .+.....
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i------- 77 (418)
T 2qag_C 11 YVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQS------- 77 (418)
T ss_dssp ----CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEE-------
T ss_pred cEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeE-------
Confidence 588999999999999999999998 99999999999999999986432232111100000 0000000
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
.+..+.... ....++.++... ..... .......+...+. ..+++++++|++||
T Consensus 78 -------~~v~q~~~~---~~~Ltv~Dt~g~-~~~~~---~~~~~~~i~~~i~-------------~~~~~~l~qr~~Ia 130 (418)
T 2qag_C 78 -------KVLIKEGGV---QLLLTIVDTPGF-GDAVD---NSNCWQPVIDYID-------------SKFEDYLNAESRVN 130 (418)
T ss_dssp -------ECC---------CEEEEEEECC---------------CHHHHHHHH-------------HHHHHHTTTSCC-C
T ss_pred -------EEEEecCCc---ccceeeeechhh-hhhcc---chhhHHHHHHHHH-------------HHHHHHHHHHHHHH
Confidence 000000000 000000000000 00000 0000001111111 13456777899999
Q ss_pred HHHccCCC---EEEEeCCC-CCCCHHHHHHHHHHHhhcCCeEEEEecCHH
Q psy11936 305 RALYIEPT---LLLLDEPT-NHLDLNAVIWLDNYLQGWKKTLLIVSHDQS 350 (548)
Q Consensus 305 raL~~~P~---lLLLDEPT-n~LD~~s~~~L~~~L~~~~~TvIiVSHD~~ 350 (548)
|+++.+|+ ||++|||| ++||+....|+..+ .. +.+||+|.|-.+
T Consensus 131 Ral~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L-~~-~v~iIlVinK~D 178 (418)
T 2qag_C 131 RRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL-HE-KVNIIPLIAKAD 178 (418)
T ss_dssp CCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHH-TT-TSEEEEEEESTT
T ss_pred HHhccCCCeeEEEEEecCcccCCCHHHHHHHHHH-hc-cCcEEEEEEccc
Confidence 99999999 99999999 69999887666544 43 577888777544
No 116
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.43 E-value=7.5e-14 Score=143.01 Aligned_cols=156 Identities=18% Similarity=0.188 Sum_probs=86.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc-hhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhH
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD-LTAVESVLKADVKRTELLAECAKLEAADFSSEQ 249 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 249 (548)
+|++++|+||||||||||+++|+|. ..|.+|+|.+.+.++.... ...+...... ....++.+. ....+..++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl--l~~~~g~V~l~g~D~~r~~a~~ql~~~~~~--~~i~~v~q~---~~~~p~~~v 173 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY--YQNLGKKVMFCAGDTFRAAGGTQLSEWGKR--LSIPVIQGP---EGTDSAALA 173 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEECCCCSSTTTTHHHHHHHHH--HTCCEECCC---TTCCHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeecCCChhHHHHHHHHHHh--cCceEEEeC---CCCCHHHHH
Confidence 6899999999999999999999985 3567899999888764322 1111100000 000000000 000000112
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHH
Q psy11936 250 QEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPT--LLLLDEPTNHLDLNA 327 (548)
Q Consensus 250 ~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~--lLLLDEPTn~LD~~s 327 (548)
.+++... ... +.+ ..+++..|..+ .....+ +...+||++|||||+.+|+ +|.|| |+++.+..
T Consensus 174 ~~~v~~~--~~~--~~d------~~llDt~G~~~-~~~~~~---~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~- 237 (304)
T 1rj9_A 174 YDAVQAM--KAR--GYD------LLFVDTAGRLH-TKHNLM---EELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGL- 237 (304)
T ss_dssp HHHHHHH--HHH--TCS------EEEECCCCCCT-TCHHHH---HHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHH-
T ss_pred HHHHHHH--HhC--CCC------EEEecCCCCCC-chHHHH---HHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHH-
Confidence 2222110 000 000 01223345432 122333 4445899999999999999 77788 67776533
Q ss_pred HHHHHHHHhhcCCeEEEEecCHH
Q psy11936 328 VIWLDNYLQGWKKTLLIVSHDQS 350 (548)
Q Consensus 328 ~~~L~~~L~~~~~TvIiVSHD~~ 350 (548)
..+..+....+.|+|+|||+..
T Consensus 238 -~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 238 -EQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp -HHHHHHHHHHCCSEEEEECTTS
T ss_pred -HHHHHHHHHcCCcEEEEECCcc
Confidence 3444444556889999999843
No 117
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.39 E-value=6.6e-16 Score=172.37 Aligned_cols=179 Identities=15% Similarity=0.212 Sum_probs=90.0
Q ss_pred cEEEEeEEEEeCCc--eeeEee----------eEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCC-CCeEEEEeceee
Q psy11936 146 DIKVENFSISAKGN--DLFVNA----------NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVP-PNIDILYCEQEV 212 (548)
Q Consensus 146 ~I~l~nls~~y~~~--~iL~~v----------sl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~-~~g~I~~~~q~i 212 (548)
.+.++||++.|+.. ++|+.+ +|+++. +||||||||||||||++|+|. ..| ++|.|.+.+.++
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl--~~P~~sG~vt~~g~~i 84 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGV--ALPRGSGIVTRCPLVL 84 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSC--C-------CCCSCEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCC--CCCCCCCeEEEcCEEE
Confidence 47788999999753 355444 366654 999999999999999999985 345 688888888775
Q ss_pred ccCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHh--CCCChhhhhccc
Q psy11936 213 VADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAG--LGFSRAMQDRAT 290 (548)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~--lgl~~~~~~~~~ 290 (548)
......... ......++.++.. ......++.+++.... ..+.. .++.
T Consensus 85 ~~~~~~~~~----~~~~~i~~v~Q~~---~l~~~~tv~e~i~~~~----------------~~~~~~~~~~s-------- 133 (608)
T 3szr_A 85 KLKKLVNED----KWRGKVSYQDYEI---EISDASEVEKEINKAQ----------------NAIAGEGMGIS-------- 133 (608)
T ss_dssp EEEECSSSS----CCEEEESCC---C---CCCCHHHHHTTHHHHH----------------HHHHCSSSCCC--------
T ss_pred EEecCCccc----cceeEEeeecccc---cCCCHHHHHHHHHHHH----------------HHhcCCccccc--------
Confidence 221100000 0000001111100 0011112222221110 01111 1111
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCC------CCCCCHHHHHHHHHHHhhc-----CCeEEEEecCHHHH-------
Q psy11936 291 KNFSGGWRMRVSLARALYIEPTLLLLDEP------TNHLDLNAVIWLDNYLQGW-----KKTLLIVSHDQSFL------- 352 (548)
Q Consensus 291 ~~LSGGqkqRvaLAraL~~~P~lLLLDEP------Tn~LD~~s~~~L~~~L~~~-----~~TvIiVSHD~~~l------- 352 (548)
.+++.++.+....|+++|+||| |++||+.....+.+++..+ ..+++++|||.+++
T Consensus 134 -------~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~l 206 (608)
T 3szr_A 134 -------HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSM 206 (608)
T ss_dssp -------SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHH
T ss_pred -------hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHH
Confidence 1223334444568999999999 9999999988888888775 35889999997633
Q ss_pred -Hhh----cCEEEEEeCCEE
Q psy11936 353 -DNV----CNEIIHLDQQKL 367 (548)
Q Consensus 353 -~~v----adrIi~L~~G~i 367 (548)
..+ +..|+++..+.+
T Consensus 207 a~~v~~~g~rtI~VlTK~Dl 226 (608)
T 3szr_A 207 AQEVDPEGDRTIGILTKPDL 226 (608)
T ss_dssp HHHHCSSCCSEEEEEECGGG
T ss_pred HHHHhhcCCceEEEecchhh
Confidence 222 356788876443
No 118
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.38 E-value=5.3e-15 Score=154.86 Aligned_cols=161 Identities=11% Similarity=0.021 Sum_probs=89.5
Q ss_pred eeEeeeEEEEC--CcEEEEECCCCCcHHHHHHHHHcCCCCCCCC----eEEEEec----eeeccCchhHHHHHHHhhHHH
Q psy11936 161 LFVNANLLIAN--GRRYGLVGPNGHGKTTLLRHIASRDLKVPPN----IDILYCE----QEVVADDLTAVESVLKADVKR 230 (548)
Q Consensus 161 iL~~vsl~I~~--Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~----g~I~~~~----q~i~~~~~~~~~~~~~~~~~~ 230 (548)
+...|+++|.+ |++++|+|+||||||||+++|+|. ..|.. |.+.+.+ .++ ......+. .
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl--~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~~--------~ 225 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAV--FNTTSAWEYGREFVFEKLGGDEQ-AMQYSDYP--------Q 225 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHH--TTCEEECCTTHHHHHHSSSSCTT-SSCTTTHH--------H
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHH--hCCCcchhhHHHHHHhhcCCCcc-cCChhHHH--------H
Confidence 35679999999 999999999999999999999985 23444 3333211 111 00000000 0
Q ss_pred HHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHc-c
Q psy11936 231 TELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALY-I 309 (548)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~-~ 309 (548)
..+..+... ....... +-+..++.. ..+..+..+|+|++++..+++++. .
T Consensus 226 I~~~~q~~~-----------------~~~~t~~----------~nl~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~ 276 (365)
T 1lw7_A 226 MALGHQRYI-----------------DYAVRHS----------HKIAFIDTD--FITTQAFCIQYEGKAHPFLDSMIKEY 276 (365)
T ss_dssp HHHHHHHHH-----------------HHHHHHC----------SSEEEESSC--HHHHHHHHHHHHSCCCHHHHHHHHHS
T ss_pred HHHHHHHHH-----------------HHHHhcc----------CCEEEEeCC--chHHHHHHHHHcCCCCHHHHHHHhhc
Confidence 001000000 0000000 000001111 122334456777788888888874 6
Q ss_pred CCCEEEEeC---CC------CCCCHHHHHHHHHHHh----hcCCeEEEEecCHHHHHhhcCEEEEE
Q psy11936 310 EPTLLLLDE---PT------NHLDLNAVIWLDNYLQ----GWKKTLLIVSHDQSFLDNVCNEIIHL 362 (548)
Q Consensus 310 ~P~lLLLDE---PT------n~LD~~s~~~L~~~L~----~~~~TvIiVSHD~~~l~~vadrIi~L 362 (548)
+|+++|||| |+ .+||+..+..+.+.|. +.+.+||+++|. ....++|+++..|
T Consensus 277 ~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i 341 (365)
T 1lw7_A 277 PFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVI 341 (365)
T ss_dssp CCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHH
Confidence 999999999 65 5899887777777763 346799999986 3444555554433
No 119
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.37 E-value=4e-14 Score=148.97 Aligned_cols=129 Identities=18% Similarity=0.178 Sum_probs=85.7
Q ss_pred eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCC-CeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHH
Q psy11936 160 DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPP-NIDILYCEQEVVADDLTAVESVLKADVKRTELLAECA 238 (548)
Q Consensus 160 ~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~-~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 238 (548)
.+|++++ +.+|++++|+|||||||||||++|+|. ..+. +|.|.+.+..+... .. . ..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~--~~~~~~g~I~~~e~~~e~~-~~-------~---~~------- 183 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYV-FK-------H---KK------- 183 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHH--HHHHSCCEEEEEESSCCSC-CC-------C---SS-------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhh--cCcCCCcEEEEecccHhhh-hc-------c---Cc-------
Confidence 3566665 789999999999999999999999984 2343 67887665433110 00 0 00
Q ss_pred HHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q psy11936 239 KLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDE 318 (548)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDE 318 (548)
...+. ..+|+. +..| +.+|+++|..+|++||+||
T Consensus 184 ---~~v~Q------------------------------~~~g~~-------~~~~------~~~l~~~L~~~pd~illdE 217 (372)
T 2ewv_A 184 ---SIVNQ------------------------------REVGED-------TKSF------ADALRAALREDPDVIFVGE 217 (372)
T ss_dssp ---SEEEE------------------------------EEBTTT-------BSCS------HHHHHHHTTSCCSEEEESC
T ss_pred ---eEEEe------------------------------eecCCC-------HHHH------HHHHHHHhhhCcCEEEECC
Confidence 00000 012221 2345 4699999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEE
Q psy11936 319 PTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIH 361 (548)
Q Consensus 319 PTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~ 361 (548)
|| |..+...+.+.. ..+.+||+++|+.+ +..+|||++.
T Consensus 218 ~~---d~e~~~~~l~~~-~~g~~vi~t~H~~~-~~~~~~rl~~ 255 (372)
T 2ewv_A 218 MR---DLETVETALRAA-ETGHLVFGTLHTNT-AIDTIHRIVD 255 (372)
T ss_dssp CC---SHHHHHHHHHHH-TTTCEEEECCCCCS-HHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHH-hcCCEEEEEECcch-HHHHHHHHHH
Confidence 99 887766555544 34679999999966 5556666543
No 120
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.30 E-value=1.5e-11 Score=130.46 Aligned_cols=57 Identities=5% Similarity=0.085 Sum_probs=40.5
Q ss_pred cCCCEEEEeCCCCCCCHHHH------------HH----HHHHHhhcCCeEEEEecCH-------------------HHHH
Q psy11936 309 IEPTLLLLDEPTNHLDLNAV------------IW----LDNYLQGWKKTLLIVSHDQ-------------------SFLD 353 (548)
Q Consensus 309 ~~P~lLLLDEPTn~LD~~s~------------~~----L~~~L~~~~~TvIiVSHD~-------------------~~l~ 353 (548)
.+|++|++||||+.+|.... .. |..+.++++.|||+|+|.. ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 57999999999999996321 22 3334445689999999993 2346
Q ss_pred hhcCEEEEEeCC
Q psy11936 354 NVCNEIIHLDQQ 365 (548)
Q Consensus 354 ~vadrIi~L~~G 365 (548)
.+||.+++|+.+
T Consensus 352 ~~ad~vl~L~~~ 363 (400)
T 3lda_A 352 YSSTTRLGFKKG 363 (400)
T ss_dssp HHCSEEEEEEEC
T ss_pred HhcceEEEEEec
Confidence 779999999865
No 121
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.28 E-value=5.3e-14 Score=132.50 Aligned_cols=161 Identities=12% Similarity=0.033 Sum_probs=84.1
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCCh
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSS 247 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 247 (548)
.+.+|++++|+||||||||||+++|+|. +..|.|.+.+.++....... ....+..+... ...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~----~~~g~i~i~~d~~~~~~~~~---------~~~~~~~~~~~-----~~~ 66 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL----PGVPKVHFHSDDLWGYIKHG---------RIDPWLPQSHQ-----QNR 66 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC----SSSCEEEECTTHHHHTCCSS---------CCCTTSSSHHH-----HHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc----cCCCeEEEcccchhhhhhcc---------cccCCccchhh-----hhH
Confidence 4779999999999999999999999974 45667776654331100000 00000000000 001
Q ss_pred hHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhh--hcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q psy11936 248 EQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQ--DRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL 325 (548)
Q Consensus 248 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~--~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~ 325 (548)
++.+++......+...+... .+..++..+++. ... +.++..+|+|++||+++||++..+|+++ +|+
T Consensus 67 ~v~~~l~~~~~~~~~~~~~~---~~~~~~~~~~l~-~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~ 134 (191)
T 1zp6_A 67 MIMQIAADVAGRYAKEGYFV---ILDGVVRPDWLP-AFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDP 134 (191)
T ss_dssp HHHHHHHHHHHHHHHTSCEE---EECSCCCTTTTH-HHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCH
T ss_pred HHHHHHHHHHHHHhccCCeE---EEeccCcHHHHH-HHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCH
Confidence 11111111100010000000 000011112221 111 3456789999999999999999999887 688
Q ss_pred HHHHHHHHHHhhcC--CeEEEEecCHHHHHhhcCEE
Q psy11936 326 NAVIWLDNYLQGWK--KTLLIVSHDQSFLDNVCNEI 359 (548)
Q Consensus 326 ~s~~~L~~~L~~~~--~TvIiVSHD~~~l~~vadrI 359 (548)
.....+.+.+..+. ..+++.|++. .+..++++|
T Consensus 135 ~~~~~~~~~~~~l~~~~~~~i~t~~~-~~~~~~~~i 169 (191)
T 1zp6_A 135 LVVADLHSQFADLGAFEHHVLPVSGK-DTDQALQSA 169 (191)
T ss_dssp HHHHHHHHHTTCCGGGGGGEEECTTC-CTTTTTTTT
T ss_pred HHHHHHHHHHhccCcccccEEECCCC-CHHHHHHHH
Confidence 88888888776542 2345555532 233445544
No 122
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.26 E-value=7.5e-13 Score=123.98 Aligned_cols=42 Identities=14% Similarity=0.138 Sum_probs=35.3
Q ss_pred cCCCEEEEeCCCC-CCCHHHHHHHHHHHhhc---CCeEEEEecCHH
Q psy11936 309 IEPTLLLLDEPTN-HLDLNAVIWLDNYLQGW---KKTLLIVSHDQS 350 (548)
Q Consensus 309 ~~P~lLLLDEPTn-~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~ 350 (548)
.+|++||||||++ ++|+.....|.+++... +.++|++||...
T Consensus 99 ~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 99 LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 4899999999985 89999988888877643 579999999763
No 123
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.25 E-value=2.3e-12 Score=127.04 Aligned_cols=47 Identities=23% Similarity=0.269 Sum_probs=40.6
Q ss_pred hhhcccCCCCHHHHHHHHHHHHH-ccCCCEEEEe----CCCCCCCHHHHHHHHHHHhhc
Q psy11936 285 MQDRATKNFSGGWRMRVSLARAL-YIEPTLLLLD----EPTNHLDLNAVIWLDNYLQGW 338 (548)
Q Consensus 285 ~~~~~~~~LSGGqkqRvaLAraL-~~~P~lLLLD----EPTn~LD~~s~~~L~~~L~~~ 338 (548)
..++++..||| || +|| +.+|++++|| |||++||..+...+.+.|..+
T Consensus 145 ~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~ 196 (246)
T 2bbw_A 145 LSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQY 196 (246)
T ss_dssp HHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHH
T ss_pred HHcCCCcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHH
Confidence 45788899999 66 777 9999999999 999999999888888877765
No 124
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.24 E-value=1.1e-12 Score=139.66 Aligned_cols=169 Identities=15% Similarity=0.149 Sum_probs=91.5
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcE--EEEECCCCCcHHHHHHHHHcCCCC---C----CCC--eEEEEeceeeccC
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRR--YGLVGPNGHGKTTLLRHIASRDLK---V----PPN--IDILYCEQEVVAD 215 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~--igLvGpNGsGKSTLLklLaG~~~~---~----~~~--g~I~~~~q~i~~~ 215 (548)
|++.+ +++|++.+ |+++||+|.+|++ +||||||||||||||++|+|..+. . +.. ..++|..|.....
T Consensus 17 l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~ 94 (427)
T 2qag_B 17 VPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVR 94 (427)
T ss_dssp CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CE
T ss_pred EEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccc
Confidence 55667 88998877 9999999999999 999999999999999999996321 0 111 1234433321100
Q ss_pred -chhHHHHHHHhhHHHHHHHHHHHHHhhhcCCh--hHHHHHHHHHHHHHhcCCCChHHHHHHHHHhC-CCCh---hhhhc
Q psy11936 216 -DLTAVESVLKADVKRTELLAECAKLEAADFSS--EQQEQLKEIYEELKAIGADSAEPRARRILAGL-GFSR---AMQDR 288 (548)
Q Consensus 216 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~l-gl~~---~~~~~ 288 (548)
..+.. ....+.. ........+... ....+..+|... ++.. ...+.
T Consensus 95 ~~ltv~--------------------D~~~~g~~~~~~~~~~~i~~~--------i~~q~~~~L~e~~~i~r~l~~~~d~ 146 (427)
T 2qag_B 95 LKLTIV--------------------STVGFGDQINKEDSYKPIVEF--------IDAQFEAYLQEELKIRRVLHTYHDS 146 (427)
T ss_dssp EEEEEE--------------------EEECCCC-CCHHHHSHHHHHH--------HHHHHHHHHHHC--CCCCCCCSCC-
T ss_pred cccchh--------------------hhhhhhhccccchhhhHHHHH--------HHHHHHHHHHHHHhhhhhhcccccc
Confidence 00000 0000000 000000000000 112233333333 2210 00011
Q ss_pred c----c-------CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCeEEEEecC
Q psy11936 289 A----T-------KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG----WKKTLLIVSHD 348 (548)
Q Consensus 289 ~----~-------~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~----~~~TvIiVSHD 348 (548)
. + ..|+-.. +.|+++|..+++||++|+||..|.+.....+...+.+ .+.+|+.+|.|
T Consensus 147 rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 147 RIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp -CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred cccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 1 1 2455555 7999999999999999999999999877776666653 46789988875
No 125
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.21 E-value=8.8e-15 Score=138.14 Aligned_cols=75 Identities=9% Similarity=0.084 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHH------HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecC-HHHHHhhcCEEEEEe
Q psy11936 294 SGGWRMRVSLAR------ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHD-QSFLDNVCNEIIHLD 363 (548)
Q Consensus 294 SGGqkqRvaLAr------aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD-~~~l~~vadrIi~L~ 363 (548)
|+|+++++.++. +|+.+|....+|+ +||+..+.. .+.+..+ +.++|.+||. ++.+..+||+|+ +
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~ 169 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--T 169 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--H
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--h
Confidence 899998988888 8999999888884 899877666 5555543 4689999998 999999999998 9
Q ss_pred CCEEEEEcCCHH
Q psy11936 364 QQKLYYYKGNYS 375 (548)
Q Consensus 364 ~G~i~~~~g~y~ 375 (548)
+|+++.. |+.+
T Consensus 170 ~g~~~~~-~~~~ 180 (189)
T 2bdt_A 170 NPRFIFC-MAGD 180 (189)
T ss_dssp CGGGSCC-----
T ss_pred CCcEEEe-ecCC
Confidence 9998753 5443
No 126
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.20 E-value=7.7e-12 Score=122.09 Aligned_cols=51 Identities=12% Similarity=0.225 Sum_probs=41.3
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCC
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQ 365 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G 365 (548)
+..++..++++||| ||+.+...+.+.+. .+.|||++|||++.+.. |+ +.+|
T Consensus 101 v~~~l~~G~illLD-----LD~~~~~~i~~~l~-~~~tI~i~th~~~~l~~---Rl--~~rG 151 (219)
T 1s96_A 101 IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-HARSIFILPPSKIELDR---RL--RGRG 151 (219)
T ss_dssp HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-TCEEEEEECSSHHHHHH---HH--HTTS
T ss_pred HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-CCEEEEEECCCHHHHHH---HH--HHcC
Confidence 34455668999999 99999999999887 36799999999998875 33 5666
No 127
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.19 E-value=2.1e-12 Score=137.60 Aligned_cols=146 Identities=23% Similarity=0.181 Sum_probs=85.0
Q ss_pred eEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCC---------CCCCCeEEEEec-eeeccCchhHHHHHHHhhHHHH
Q psy11936 162 FVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDL---------KVPPNIDILYCE-QEVVADDLTAVESVLKADVKRT 231 (548)
Q Consensus 162 L~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~---------~~~~~g~I~~~~-q~i~~~~~~~~~~~~~~~~~~~ 231 (548)
-++++|+|..|+.++|||+|||||||||++|+|... ..|..+.+.+.+ ..+...+...+. ....
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli---~~a~--- 220 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGII---EGAS--- 220 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCC---CCGG---
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccc---cchh---
Confidence 479999999999999999999999999999998521 112222232222 111111100000 0000
Q ss_pred HHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCC
Q psy11936 232 ELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEP 311 (548)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P 311 (548)
. ...... . . +.. ..++..+|..++++ +.++.+||+|++|++++|++|+..|
T Consensus 221 ---------~--~~~L~~-~----f---l~~------~era~~lL~vvDls----~~~~~~ls~g~~el~~la~aL~~~P 271 (416)
T 1udx_A 221 ---------E--GKGLGL-E----F---LRH------IARTRVLLYVLDAA----DEPLKTLETLRKEVGAYDPALLRRP 271 (416)
T ss_dssp ---------G--SCCSCH-H----H---HHH------HTSSSEEEEEEETT----SCHHHHHHHHHHHHHHHCHHHHHSC
T ss_pred ---------h--hhhhhH-H----H---HHH------HHHHHhhhEEeCCc----cCCHHHHHHHHHHHHHHhHHhhcCC
Confidence 0 000000 0 0 000 00112233344443 4567789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHH---HHHHHHhhcCCeEEEEe
Q psy11936 312 TLLLLDEPTNHLDLNAVI---WLDNYLQGWKKTLLIVS 346 (548)
Q Consensus 312 ~lLLLDEPTn~LD~~s~~---~L~~~L~~~~~TvIiVS 346 (548)
.||+| |.||+.... .+.+.+...+.++|+||
T Consensus 272 ~ILVl----NKlDl~~~~~~~~l~~~l~~~g~~vi~iS 305 (416)
T 1udx_A 272 SLVAL----NKVDLLEEEAVKALADALAREGLAVLPVS 305 (416)
T ss_dssp EEEEE----ECCTTSCHHHHHHHHHHHHTTTSCEEECC
T ss_pred EEEEE----ECCChhhHHHHHHHHHHHHhcCCeEEEEE
Confidence 99999 999985433 33344444456777666
No 128
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.18 E-value=9.1e-13 Score=137.99 Aligned_cols=153 Identities=14% Similarity=0.065 Sum_probs=98.6
Q ss_pred EEEeEEEE---eCC--ceee---------EeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeec
Q psy11936 148 KVENFSIS---AKG--NDLF---------VNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVV 213 (548)
Q Consensus 148 ~l~nls~~---y~~--~~iL---------~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~ 213 (548)
++++++|+ |+. ..+| +++||.|.+|+.++|+||||||||||+++|+|. ..|..|.|.+.+..-.
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~--~~~~~g~I~ie~~~e~ 214 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQE--IPFDQRLITIEDVPEL 214 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTT--SCTTSCEEEEESSSCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhc--CCCCceEEEECCcccc
Confidence 56777777 753 3344 999999999999999999999999999999984 4567788877653110
Q ss_pred cCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCC
Q psy11936 214 ADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNF 293 (548)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~L 293 (548)
... .. . . .+++-. .......+
T Consensus 215 ~~~--~~-------~-------------~-----------------------------------~v~~v~--~q~~~~~~ 235 (361)
T 2gza_A 215 FLP--DH-------P-------------N-----------------------------------HVHLFY--PSEAKEEE 235 (361)
T ss_dssp CCT--TC-------S-------------S-----------------------------------EEEEEC--C-------
T ss_pred Ccc--cc-------C-------------C-----------------------------------EEEEee--cCcccccc
Confidence 000 00 0 0 000000 00000012
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCE
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQK 366 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~ 366 (548)
+++..++..|+.+|...|+.+|+|||+. ......|. .+..-..|+|.++|+.. +...|+|++.|..+.
T Consensus 236 ~~~~t~~~~i~~~l~~~pd~~l~~e~r~---~~~~~~l~-~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 236 NAPVTAATLLRSCLRMKPTRILLAELRG---GEAYDFIN-VAASGHGGSITSCHAGS-CELTFERLALMVLQN 303 (361)
T ss_dssp ---CCHHHHHHHHTTSCCSEEEESCCCS---THHHHHHH-HHHTTCCSCEEEEECSS-HHHHHHHHHHHHTTS
T ss_pred ccccCHHHHHHHHHhcCCCEEEEcCchH---HHHHHHHH-HHhcCCCeEEEEECCCC-HHHHHHHHHHHHhcc
Confidence 4555688999999999999999999986 23333332 23222347899999976 667899998887764
No 129
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.16 E-value=1.4e-13 Score=141.71 Aligned_cols=54 Identities=17% Similarity=0.097 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhc
Q psy11936 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVC 356 (548)
Q Consensus 292 ~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~va 356 (548)
+|||||+||+..+++++.+|+++ ||| ..+.+.|+.+ +.|||++||+...++.+.
T Consensus 141 ~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~~~~l~ 196 (318)
T 1nij_A 141 QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGDIDLGLLF 196 (318)
T ss_dssp HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCCCGGGGS
T ss_pred hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCCCHHHHh
Confidence 79999999999999999999987 999 4444555443 479999999755554444
No 130
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.14 E-value=2.6e-13 Score=126.01 Aligned_cols=61 Identities=18% Similarity=-0.021 Sum_probs=51.6
Q ss_pred EEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee
Q psy11936 149 VENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV 212 (548)
Q Consensus 149 l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i 212 (548)
..++++.|++..+++++||+|.+|++++|+||||||||||+|+|+|.. |.+|.|.+.+..+
T Consensus 10 ~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l---~~~G~V~~~g~~i 70 (158)
T 1htw_A 10 DEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI---GHQGNVKSPTYTL 70 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT---TCCSCCCCCTTTC
T ss_pred CHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC---CCCCeEEECCEee
Confidence 346778888888999999999999999999999999999999999852 6677776665544
No 131
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.14 E-value=3.2e-11 Score=110.58 Aligned_cols=41 Identities=22% Similarity=0.138 Sum_probs=30.6
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCe-EEEEecC
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG---WKKT-LLIVSHD 348 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~---~~~T-vIiVSHD 348 (548)
++.+|+|||||||++ ++......|.+++.. .+.+ +|++||.
T Consensus 80 ~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 80 AAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 467899999999998 665557777777654 3567 8888884
No 132
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.09 E-value=2.5e-13 Score=141.00 Aligned_cols=65 Identities=17% Similarity=0.124 Sum_probs=55.8
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV 212 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i 212 (548)
+|+++++++.|++..+|+++||++.+|++++|+|+|||||||||++|+|. ..|.+|+|.+.+.++
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~--~~~~~g~v~i~~~d~ 93 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSL--LTAAGHKVAVLAVDP 93 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHH--HHHTTCCEEEEEECG
T ss_pred HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHh--hhhCCCEEEEEEEcC
Confidence 46677889999878899999999999999999999999999999999984 345677787777655
No 133
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.05 E-value=1.2e-09 Score=106.03 Aligned_cols=56 Identities=23% Similarity=0.248 Sum_probs=42.0
Q ss_pred cCCCEEEEeCCCCCC--CHHH----HHHHHHHHhhcCCeEEEEecCHHH--------HHhhcCEEEEEeC
Q psy11936 309 IEPTLLLLDEPTNHL--DLNA----VIWLDNYLQGWKKTLLIVSHDQSF--------LDNVCNEIIHLDQ 364 (548)
Q Consensus 309 ~~P~lLLLDEPTn~L--D~~s----~~~L~~~L~~~~~TvIiVSHD~~~--------l~~vadrIi~L~~ 364 (548)
.+|+++++|+||+.+ |+.. ...|.+++++.+.|||+++|.... +..+||.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 5422 234555566778999999998765 4578999999964
No 134
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.05 E-value=1.3e-10 Score=120.03 Aligned_cols=170 Identities=15% Similarity=0.143 Sum_probs=91.7
Q ss_pred EECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHH--HHHHHHHHhhhcCC
Q psy11936 169 IANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTE--LLAECAKLEAADFS 246 (548)
Q Consensus 169 I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~ 246 (548)
..+|++++|+||||||||||+++|+|. ..+.+|+|.+.+.++...... ... .......+ ++.+ .....+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~--l~~~~g~V~l~g~D~~r~~a~--eql-~~~~~~~gv~~v~q---~~~~~p~ 197 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANW--LKNHGFSVVIAASDTFRAGAI--EQL-EEHAKRIGVKVIKH---SYGADPA 197 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEECCSSTTHH--HHH-HHHHHHTTCEEECC---CTTCCHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCEEEEEeecccccchH--HHH-HHHHHHcCceEEec---cccCCHH
Confidence 368999999999999999999999984 356788999988876432211 100 00000000 0000 0000001
Q ss_pred hhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q psy11936 247 SEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN 326 (548)
Q Consensus 247 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~ 326 (548)
.++.+++... .. .+.+. -+++..|... .....+.+|| .+++++..++.+++||.+|. .|
T Consensus 198 ~~v~e~l~~~---~~-~~~d~------vliDtaG~~~-~~~~l~~eL~-------~i~ral~~de~llvLDa~t~-~~-- 256 (328)
T 3e70_C 198 AVAYDAIQHA---KA-RGIDV------VLIDTAGRSE-TNRNLMDEMK-------KIARVTKPNLVIFVGDALAG-NA-- 256 (328)
T ss_dssp HHHHHHHHHH---HH-HTCSE------EEEEECCSCC-TTTCHHHHHH-------HHHHHHCCSEEEEEEEGGGT-TH--
T ss_pred HHHHHHHHHH---Hh-ccchh------hHHhhccchh-HHHHHHHHHH-------HHHHHhcCCCCEEEEecHHH-HH--
Confidence 1122222110 00 00000 0122223321 1122333444 48999999999999996665 33
Q ss_pred HHHHHHHHHhhcCCeEEEEecCH---------HHHHhhcCEEEEEeCCEE
Q psy11936 327 AVIWLDNYLQGWKKTLLIVSHDQ---------SFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 327 s~~~L~~~L~~~~~TvIiVSHD~---------~~l~~vadrIi~L~~G~i 367 (548)
....+..+-...+.|+||+||.- ..+....-.|.++..|+-
T Consensus 257 ~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~ 306 (328)
T 3e70_C 257 IVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQG 306 (328)
T ss_dssp HHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSS
T ss_pred HHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCC
Confidence 33344444456788999999943 234445567888887764
No 135
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.04 E-value=2.1e-10 Score=116.85 Aligned_cols=130 Identities=18% Similarity=0.082 Sum_probs=86.3
Q ss_pred EEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhh
Q psy11936 148 KVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKAD 227 (548)
Q Consensus 148 ~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~ 227 (548)
.++++++.|+... ++++|+ +|++++|+|+|||||||++..|++.. .+..+++.+.+.++... ...
T Consensus 78 ~~~~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~--~~~~~~v~l~~~d~~~~--~~~------- 142 (295)
T 1ls1_A 78 VYEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYY--KGKGRRPLLVAADTQRP--AAR------- 142 (295)
T ss_dssp HHHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHH--HHTTCCEEEEECCSSCH--HHH-------
T ss_pred HHHHHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEecCCcccH--hHH-------
Confidence 3556777786543 788888 99999999999999999999999842 34567787776654210 000
Q ss_pred HHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHH
Q psy11936 228 VKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARAL 307 (548)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL 307 (548)
.+. . .+....|++- . .. ....+-.+.+|.+|++++
T Consensus 143 -------~ql----------------~-------------------~~~~~~~l~~-~-~~-~~~~~p~~l~~~~l~~~~ 177 (295)
T 1ls1_A 143 -------EQL----------------R-------------------LLGEKVGVPV-L-EV-MDGESPESIRRRVEEKAR 177 (295)
T ss_dssp -------HHH----------------H-------------------HHHHHHTCCE-E-EC-CTTCCHHHHHHHHHHHHH
T ss_pred -------HHH----------------H-------------------HhcccCCeEE-E-Ec-CCCCCHHHHHHHHHHHHH
Confidence 000 0 0111223321 0 00 001233455789999998
Q ss_pred ccCCCEEEEeCC-CCCCCHHHHHHHHHHHhh
Q psy11936 308 YIEPTLLLLDEP-TNHLDLNAVIWLDNYLQG 337 (548)
Q Consensus 308 ~~~P~lLLLDEP-Tn~LD~~s~~~L~~~L~~ 337 (548)
..+++++|+|+| ++++|......+..++..
T Consensus 178 ~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~ 208 (295)
T 1ls1_A 178 LEARDLILVDTAGRLQIDEPLMGELARLKEV 208 (295)
T ss_dssp HHTCCEEEEECCCCSSCCHHHHHHHHHHHHH
T ss_pred hCCCCEEEEeCCCCccccHHHHHHHHHHhhh
Confidence 899999999999 999999888777776554
No 136
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.02 E-value=2.6e-10 Score=116.79 Aligned_cols=98 Identities=19% Similarity=0.180 Sum_probs=69.3
Q ss_pred eeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHHHhhhc
Q psy11936 165 ANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAAD 244 (548)
Q Consensus 165 vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 244 (548)
++|...+|++++|+|+|||||||++..|++.. .+..++|.+.+.+.... ...
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l--~~~g~kV~lv~~D~~r~----------------~a~---------- 148 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF--VDEGKSVVLAAADTFRA----------------AAI---------- 148 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHH--HHTTCCEEEEEECTTCH----------------HHH----------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHH--HhcCCEEEEEccccccH----------------HHH----------
Confidence 45566789999999999999999999999742 34456777766543110 000
Q ss_pred CChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH---HHHHHHccCCCEEEEeCCCC
Q psy11936 245 FSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV---SLARALYIEPTLLLLDEPTN 321 (548)
Q Consensus 245 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv---aLAraL~~~P~lLLLDEPTn 321 (548)
+ .+..++..+|++. +..+|||+.+++ +|++++..+|+++|+|+|..
T Consensus 149 ------e-------------------qL~~~~~~~gl~~------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 149 ------E-------------------QLKIWGERVGATV------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp ------H-------------------HHHHHHHHHTCEE------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred ------H-------------------HHHHHHHHcCCcE------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 0 0111233345531 346799999999 99999999999999999985
No 137
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.02 E-value=1.1e-12 Score=140.01 Aligned_cols=157 Identities=18% Similarity=0.163 Sum_probs=90.2
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccC--chh--HHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVAD--DLT--AVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~--~~~--~~~ 221 (548)
.++++++++.|+...+|+++ +. .+|++++|+|||||||||||++|+|. ..+..|.|.+.+..+... ... .+.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~--l~~~~g~I~~~ed~ie~~~~~~~q~~v~ 218 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQE--LNSSERNILTVEDPIEFDIDGIGQTQVN 218 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHH--HCCTTSCEEEEESSCCSCCSSSEEEECB
T ss_pred CCCHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhh--cCCCCCEEEEecccchhccCCcceEEEc
Confidence 46677888877766788888 53 79999999999999999999999985 245678888877654211 000 000
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhc--CC----hhHHHHHHHHHHHHHh------cCCCChHHHHHHHHHhCCCChhhhhcc
Q psy11936 222 SVLKADVKRTELLAECAKLEAAD--FS----SEQQEQLKEIYEELKA------IGADSAEPRARRILAGLGFSRAMQDRA 289 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~--~~----~~~~~~l~~~~~~l~~------~~~~~~~~~~~~~L~~lgl~~~~~~~~ 289 (548)
......+ ...+...+.+..... .. .+..+.+.. .... +....... +...|..+|+... ..
T Consensus 219 ~~~g~~f-~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a---~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~---~~ 290 (418)
T 1p9r_A 219 PRVDMTF-ARGLRAILRQDPDVVMVGEIRDLETAQIAVQA---SLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPF---LI 290 (418)
T ss_dssp GGGTBCH-HHHHHHHGGGCCSEEEESCCCSHHHHHHHHHH---HHTTCEEEEEECCSSSHH-HHHHHHHHTCCHH---HH
T ss_pred cccCcCH-HHHHHHHhccCCCeEEEcCcCCHHHHHHHHHH---HHhCCCcccccchhhHHH-HHHHHHHcCCcHH---HH
Confidence 0000000 000000000000000 00 122222211 1110 11222233 3345778898753 26
Q ss_pred cCCCCHHHHHHHHHHHHHccCCCEEEE
Q psy11936 290 TKNFSGGWRMRVSLARALYIEPTLLLL 316 (548)
Q Consensus 290 ~~~LSGGqkqRvaLAraL~~~P~lLLL 316 (548)
+.+|||||+|| |||+|+.+|+++.-
T Consensus 291 ~~~LSgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 291 SSSLLGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp HHHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred HHHHHHHHHHH--hhhhhcCCCCccCC
Confidence 78999999999 99999999999763
No 138
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.98 E-value=2.2e-11 Score=123.84 Aligned_cols=39 Identities=10% Similarity=0.037 Sum_probs=32.6
Q ss_pred cccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q psy11936 288 RATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN 326 (548)
Q Consensus 288 ~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~ 326 (548)
.+...+||||+||+++|++...+|+|||+||||++||+.
T Consensus 130 ~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 130 KYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp CEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred cCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 455789999999999984333399999999999999985
No 139
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.98 E-value=7.1e-10 Score=113.00 Aligned_cols=137 Identities=15% Similarity=0.211 Sum_probs=83.9
Q ss_pred ECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCe-EEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChh
Q psy11936 170 ANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI-DILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSE 248 (548)
Q Consensus 170 ~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g-~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 248 (548)
.+|++++|+|+|||||||++..|++.. .+..| +|.+.+.+..... .
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l--~~~~G~~V~lv~~D~~r~~--a----------------------------- 149 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAIS--MLEKHKKIAFITTDTYRIA--A----------------------------- 149 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCCEEEEECCCSSTT--H-----------------------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH--HHhcCCEEEEEecCcccch--H-----------------------------
Confidence 379999999999999999999999742 23344 6777665542110 0
Q ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH
Q psy11936 249 QQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAV 328 (548)
Q Consensus 249 ~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~ 328 (548)
.+++. .+...+|++.. . ..++ ...+.+|++ +.+|+++|+| |+++|+...
T Consensus 150 -~eqL~-------------------~~~~~~gl~~~-----~-~~~~-~~l~~al~~--~~~~dlvIiD--T~G~~~~~~ 198 (296)
T 2px0_A 150 -VEQLK-------------------TYAELLQAPLE-----V-CYTK-EEFQQAKEL--FSEYDHVFVD--TAGRNFKDP 198 (296)
T ss_dssp -HHHHH-------------------HHHTTTTCCCC-----B-CSSH-HHHHHHHHH--GGGSSEEEEE--CCCCCTTSH
T ss_pred -HHHHH-------------------HHHHhcCCCeE-----e-cCCH-HHHHHHHHH--hcCCCEEEEe--CCCCChhhH
Confidence 00000 01112233210 0 1222 334666664 4999999999 999998655
Q ss_pred HHHHHHHhhc----C-CeEEEE--ecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 329 IWLDNYLQGW----K-KTLLIV--SHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 329 ~~L~~~L~~~----~-~TvIiV--SHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
..+.++..-. . .+++++ ||+...+..+|+++..+..+.++..
T Consensus 199 ~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 199 QYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp HHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred HHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 4444332221 1 345555 9999999999998776777777753
No 140
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.97 E-value=1.7e-10 Score=124.66 Aligned_cols=49 Identities=20% Similarity=0.140 Sum_probs=42.3
Q ss_pred eEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee
Q psy11936 162 FVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV 212 (548)
Q Consensus 162 L~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i 212 (548)
-+++||++.+|++++|||+||||||||+++|+|. ..+.+|+|.+.+.+.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgl--l~~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQ--FEQQGKSVMLAAGDT 331 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEECCCT
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHH--hhhcCCeEEEecCcc
Confidence 4689999999999999999999999999999985 346678888877654
No 141
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.96 E-value=1.1e-09 Score=112.90 Aligned_cols=44 Identities=18% Similarity=0.230 Sum_probs=37.0
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHH
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSF 351 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~ 351 (548)
+..+|+|||||||++ ||..+...|.++|.+. +.++|++||+...
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSP 176 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHH
Confidence 788999999999999 9999999999999876 3689999999754
No 142
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.93 E-value=1.4e-11 Score=115.68 Aligned_cols=38 Identities=18% Similarity=0.136 Sum_probs=27.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCCCCCC---CeEEEEeceee
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIASRDLKVPP---NIDILYCEQEV 212 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG~~~~~~~---~g~I~~~~q~i 212 (548)
++++|+|+||||||||+++|+|. ..+. .|.|.+.+.++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~--~~~~g~~~G~I~~dg~~i 43 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI--LRERGLRVAVVKRHAHGD 43 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH--HHHTTCCEEEEEC-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--hhhcCCceEEEEEcCccc
Confidence 58999999999999999999985 2343 57787777653
No 143
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.92 E-value=2.3e-12 Score=123.97 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=25.2
Q ss_pred EECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 169 IANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 169 I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
..+|+++||+||||||||||+++|+|.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999999985
No 144
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.92 E-value=3.8e-12 Score=128.29 Aligned_cols=150 Identities=17% Similarity=0.116 Sum_probs=85.9
Q ss_pred eCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHH
Q psy11936 156 AKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLA 235 (548)
Q Consensus 156 y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~ 235 (548)
|+...+|++++|.+..| ++|+||||||||||+++|+|.. . .+.+.+.+.++.......... ....+.
T Consensus 30 ~~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~--~--~~~i~i~g~~l~~~~~~~~~~-------~i~~vf 96 (274)
T 2x8a_A 30 VRNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANES--G--LNFISVKGPELLNMYVGESER-------AVRQVF 96 (274)
T ss_dssp HHSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHT--T--CEEEEEETTTTCSSTTHHHHH-------HHHHHH
T ss_pred hhCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHc--C--CCEEEEEcHHHHhhhhhHHHH-------HHHHHH
Confidence 34556899999999999 9999999999999999999852 1 246666665543221111111 111111
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEE
Q psy11936 236 ECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLL 315 (548)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLL 315 (548)
+.... ........+++ ..+....... ..+......++.+.+|||||+||+.|++|+..+|++|
T Consensus 97 ~~a~~--~~p~i~~~Dei-------d~~~~~r~~~-------~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L- 159 (274)
T 2x8a_A 97 QRAKN--SAPCVIFFDEV-------DALCPRRSDR-------ETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII- 159 (274)
T ss_dssp HHHHH--TCSEEEEEETC-------TTTCC----------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS-
T ss_pred HHHHh--cCCCeEeeehh-------hhhhcccCCC-------cchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC-
Confidence 11100 00000000000 0000000000 0011123456778899999999999999999999985
Q ss_pred EeCCCC------------CCCHHHHHHHHHHHh
Q psy11936 316 LDEPTN------------HLDLNAVIWLDNYLQ 336 (548)
Q Consensus 316 LDEPTn------------~LD~~s~~~L~~~L~ 336 (548)
|||+. ..|...+..+.+.+.
T Consensus 160 -D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 160 -DPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp -CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred -CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 99864 335667777766654
No 145
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.91 E-value=2.1e-12 Score=141.06 Aligned_cols=49 Identities=22% Similarity=0.139 Sum_probs=41.2
Q ss_pred eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEece
Q psy11936 160 DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQ 210 (548)
Q Consensus 160 ~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q 210 (548)
.++++++|.+.+|+.++|+|||||||||||++|+|. ..|..+.|.+.+.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~--i~~~~giitied~ 296 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMF--IPPDAKVVSIEDT 296 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGG--SCTTCCEEEEESS
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhh--CCCCCCEEEEcCc
Confidence 467889999999999999999999999999999985 2466676666553
No 146
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.88 E-value=8.8e-09 Score=107.28 Aligned_cols=68 Identities=12% Similarity=0.125 Sum_probs=46.8
Q ss_pred HHHHHHHHccC--CCEEEEeCCCCCC----------CH----HH---HHH---HHHHHhhcCCeEEEEecCHH-------
Q psy11936 300 RVSLARALYIE--PTLLLLDEPTNHL----------DL----NA---VIW---LDNYLQGWKKTLLIVSHDQS------- 350 (548)
Q Consensus 300 RvaLAraL~~~--P~lLLLDEPTn~L----------D~----~s---~~~---L~~~L~~~~~TvIiVSHD~~------- 350 (548)
-+.++++++.. |++|++|+|++.+ |. .. ... |..++++++.|||+++|-..
T Consensus 127 ~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~ 206 (349)
T 2zr9_A 127 ALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFG 206 (349)
T ss_dssp HHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC--------
T ss_pred HHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccC
Confidence 45677777654 9999999999998 32 11 122 33334667899999999654
Q ss_pred ---------HHHhhcCEEEEEeCCEE
Q psy11936 351 ---------FLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 351 ---------~l~~vadrIi~L~~G~i 367 (548)
.+..+||.++.+..+.+
T Consensus 207 ~p~~~~gg~~l~~~ad~~l~lrr~~~ 232 (349)
T 2zr9_A 207 SPETTTGGKALKFYASVRLDVRRIET 232 (349)
T ss_dssp ---CCSSHHHHHHHCSEEEEEEEEEE
T ss_pred CCcccCCchHhhhccceEEEEEEeee
Confidence 25678999998876543
No 147
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.83 E-value=5.3e-10 Score=116.69 Aligned_cols=122 Identities=15% Similarity=0.087 Sum_probs=64.7
Q ss_pred eeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC-CCCeEEEEe-ceeeccCchhHHHHHHHhhHHHHHHHHHHH
Q psy11936 161 LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV-PPNIDILYC-EQEVVADDLTAVESVLKADVKRTELLAECA 238 (548)
Q Consensus 161 iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~-~~~g~I~~~-~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 238 (548)
-++++++.+ +|++++|+||||||||||+++|+|.. . +..|.|.+. +......... ...++.+.
T Consensus 205 gl~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~--~~~~~G~I~~~~G~g~~tt~~~-----------~i~~v~q~- 269 (358)
T 2rcn_A 205 GLKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQ--NEILTNDVSNVSGLGQHTTTAA-----------RLYHFPHG- 269 (358)
T ss_dssp THHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCS--SCCCCC-------------CCC-----------EEEECTTS-
T ss_pred CHHHHHHhc-CCCEEEEECCCCccHHHHHHHHhccc--cccccCCccccCCCCccceEEE-----------EEEEECCC-
Confidence 456666654 89999999999999999999999853 4 566666554 2111000000 00000000
Q ss_pred HHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHH
Q psy11936 239 KLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARAL 307 (548)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL 307 (548)
......+++.+. .+..+........+.++++.+|+.. +.++.+.+|| ||+||++||+++
T Consensus 270 --~~l~dtpgv~e~------~l~~l~~~e~~~~~~e~l~~~gl~~-f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 270 --GDVIDSPGVREF------GLWHLEPEQITQGFVEFHDYLGHCK-YRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp --CEEEECHHHHTC------CCCCCCHHHHHHTSGGGGGGTTCSS-STTCCSSSCT-TCHHHHHHHHTS
T ss_pred --CEecCcccHHHh------hhcCCCHHHHHHHHHHHHHHcCCch-hcCCCcccCC-HHHHHHHHHhcC
Confidence 000001111100 0000000011234556788889874 5688999999 999999999875
No 148
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.82 E-value=2.5e-09 Score=114.99 Aligned_cols=176 Identities=13% Similarity=0.085 Sum_probs=100.9
Q ss_pred eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHH
Q psy11936 160 DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAK 239 (548)
Q Consensus 160 ~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (548)
..|+++..-+.+|+++.|.|++|+|||||+..|++... ......+.|++.+.... .....++... .
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~-~~~g~~Vl~~s~E~s~~--~l~~r~~~~~----------~- 256 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA-TKTNENVAIFSLEMSAQ--QLVMRMLCAE----------G- 256 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH-HHSSCCEEEEESSSCHH--HHHHHHHHHH----------H-
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-HhCCCcEEEEECCCCHH--HHHHHHHHHH----------c-
Confidence 46788887899999999999999999999999986321 11122566666543211 0011100000 0
Q ss_pred HhhhcCChhHHHHHHHHHHHHHhcCC--CChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHc--cCCCEEE
Q psy11936 240 LEAADFSSEQQEQLKEIYEELKAIGA--DSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALY--IEPTLLL 315 (548)
Q Consensus 240 ~~~~~~~~~~~~~l~~~~~~l~~~~~--~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~--~~P~lLL 315 (548)
..... .+. .+. .....++...+..++... ..-.....+|+++.+ +.|+.++ .+|++++
T Consensus 257 ----~~~~~----------~l~-~g~l~~~~~~~~~~a~~~l~~~~-l~i~d~~~~s~~~i~--~~~~~l~~~~~~~liv 318 (454)
T 2r6a_A 257 ----NINAQ----------NLR-TGKLTPEDWGKLTMAMGSLSNAG-IYIDDTPSIRVSDIR--AKCRRLKQESGLGMIV 318 (454)
T ss_dssp ----TCCHH----------HHH-TSCCCHHHHHHHHHHHHHHHSSC-EEEECCTTCCHHHHH--HHHHHHHTTTCCCEEE
T ss_pred ----CCCHH----------HHh-cCCCCHHHHHHHHHHHHHHhcCC-EEEECCCCCCHHHHH--HHHHHHHHHcCCCEEE
Confidence 00000 000 000 001122333333333221 112234579999987 4556665 6899999
Q ss_pred EeCCCCCCCH--------HHHHHHHHHH----hhcCCeEEEEec---------C--HH--------HHHhhcCEEEEEeC
Q psy11936 316 LDEPTNHLDL--------NAVIWLDNYL----QGWKKTLLIVSH---------D--QS--------FLDNVCNEIIHLDQ 364 (548)
Q Consensus 316 LDEPTn~LD~--------~s~~~L~~~L----~~~~~TvIiVSH---------D--~~--------~l~~vadrIi~L~~ 364 (548)
+|+++...+. ..+..+...| ++++.+||+++| | +. .+...||.|++|..
T Consensus 319 ID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r 398 (454)
T 2r6a_A 319 IDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYR 398 (454)
T ss_dssp EECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEE
T ss_pred EccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEec
Confidence 9999998742 2233444444 456889999999 3 21 46678999999976
Q ss_pred CEE
Q psy11936 365 QKL 367 (548)
Q Consensus 365 G~i 367 (548)
+..
T Consensus 399 ~~~ 401 (454)
T 2r6a_A 399 DDY 401 (454)
T ss_dssp TTC
T ss_pred ccc
Confidence 653
No 149
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.75 E-value=4.4e-10 Score=122.43 Aligned_cols=174 Identities=15% Similarity=0.164 Sum_probs=95.0
Q ss_pred eeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHHHh
Q psy11936 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDL--KVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLE 241 (548)
Q Consensus 164 ~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~--~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (548)
.+++.+..+..+.|+|.+||||||+|++|....+ ..|....+...+ ........+.. ++.. ..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liD--pK~~el~~~~~-----------lPhl--~~ 223 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMID--PKMLELSVYEG-----------IPHL--LT 223 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEEC--CSSSGGGGGTT-----------CTTB--SS
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEEC--Cchhhhhhhcc-----------CCcc--cc
Confidence 4678888899999999999999999999864222 234444444322 21111110000 0000 00
Q ss_pred hhcCChh-HHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh--hhhcccCCCCHHHHHHH----------HHHHHHc
Q psy11936 242 AADFSSE-QQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA--MQDRATKNFSGGWRMRV----------SLARALY 308 (548)
Q Consensus 242 ~~~~~~~-~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~--~~~~~~~~LSGGqkqRv----------aLAraL~ 308 (548)
....+.. ....+..+..+ .+.|. ++|..+|+.+. +..+....+||||+|+. ++|+++.
T Consensus 224 ~Vvtd~~~a~~~L~~~~~E--------merR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~ 294 (512)
T 2ius_A 224 EVVTDMKDAANALRWCVNE--------MERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLK 294 (512)
T ss_dssp SCBCSHHHHHHHHHHHHHH--------HHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCC
T ss_pred eeecCHHHHHHHHHHHHHH--------HHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccc
Confidence 0000110 01111111111 23343 57778887632 11122346889987752 3566778
Q ss_pred cCCC-EEEEeCCCCCCCHHH--H-HHHHHHH---hhcCCeEEEEecCHH-------HHHhhcCEEEE
Q psy11936 309 IEPT-LLLLDEPTNHLDLNA--V-IWLDNYL---QGWKKTLLIVSHDQS-------FLDNVCNEIIH 361 (548)
Q Consensus 309 ~~P~-lLLLDEPTn~LD~~s--~-~~L~~~L---~~~~~TvIiVSHD~~-------~l~~vadrIi~ 361 (548)
..|. ++++||+++.+|... . ..|..+. +.++.++|++||+.. ....+++||.+
T Consensus 295 ~lP~ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 295 KEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp CCCEEEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred cCCcEEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 8898 899999999988432 1 2222222 234679999999987 55666777765
No 150
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.74 E-value=9.9e-12 Score=131.38 Aligned_cols=64 Identities=17% Similarity=0.125 Sum_probs=53.1
Q ss_pred CC--CEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEE-EEeCC-EEEEEcCCHHH
Q psy11936 310 EP--TLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEII-HLDQQ-KLYYYKGNYSM 376 (548)
Q Consensus 310 ~P--~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi-~L~~G-~i~~~~g~y~~ 376 (548)
+| +++++|||++.+|+..+....+.+... +.|| +||+...+..+|++|. +|++| +++. .|.+++
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~-~~~~~~ 210 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIR-KGDWSN 210 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGG-GSCCCH
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceee-cCCCCH
Confidence 89 999999999999999998888887765 3454 3999999999999999 89999 7764 365543
No 151
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.74 E-value=2.1e-09 Score=116.32 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=43.5
Q ss_pred ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee
Q psy11936 159 NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV 212 (548)
Q Consensus 159 ~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i 212 (548)
..+|+++||+|.+ +++||+|||||||||||++|+|. ..|.+|.|.+.++.+
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl--~~p~~G~I~~~g~~~ 67 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTA--LIPDLTLLNFRNTTE 67 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHH--HCCCTTTCCCCCTTS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcC--CCCCCCEEEECCEEc
Confidence 3579999999999 99999999999999999999985 356677777766554
No 152
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.71 E-value=4.3e-12 Score=131.09 Aligned_cols=179 Identities=17% Similarity=0.206 Sum_probs=93.5
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECC-------cEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhH
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANG-------RRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTA 219 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~G-------e~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~ 219 (548)
++.++++..|+...+++++++.|..| +.++|+||||+|||||+++|+|.. . . .+.+....+... ...
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l-~--~--~~~~~sg~~~~~-~~~ 92 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL-Q--T--NIHVTSGPVLVK-QGD 92 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH-T--C--CEEEEETTTCCS-HHH
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh-C--C--CEEEEechHhcC-HHH
Confidence 44556777788888999999999877 899999999999999999999842 1 1 111111111111 111
Q ss_pred HHHHHHhhHH-HHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC------CChHHHHHHHHHhCCCChhhhhcccCC
Q psy11936 220 VESVLKADVK-RTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA------DSAEPRARRILAGLGFSRAMQDRATKN 292 (548)
Q Consensus 220 ~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~------~~~~~~~~~~L~~lgl~~~~~~~~~~~ 292 (548)
+......... ...++. +......+..+.+ +..+..... ......+...+..++|.. ....+..
T Consensus 93 l~~~~~~~~~~~v~~iD-----E~~~l~~~~~e~L---~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~--at~~~~~ 162 (334)
T 1in4_A 93 MAAILTSLERGDVLFID-----EIHRLNKAVEELL---YSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG--ATTRSGL 162 (334)
T ss_dssp HHHHHHHCCTTCEEEEE-----TGGGCCHHHHHHH---HHHHHTSCCCC---------------CCCEEEE--EESCGGG
T ss_pred HHHHHHHccCCCEEEEc-----chhhcCHHHHHHH---HHHHHhcccceeeccCcccccccccCCCeEEEE--ecCCccc
Confidence 1110000000 000000 0000111222222 111221111 112233444555666642 4566789
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNE 358 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadr 358 (548)
||+|++||+.++ .+||+.+...+.++|..... ..-++|+.+.+..+|++
T Consensus 163 Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~-~~~~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 163 LSSPLRSRFGII----------------LELDFYTVKELKEIIKRAAS-LMDVEIEDAAAEMIAKR 211 (334)
T ss_dssp SCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHH-HTTCCBCHHHHHHHHHT
T ss_pred CCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHH-HcCCCcCHHHHHHHHHh
Confidence 999999998655 77887777777777654311 01247888888877764
No 153
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.62 E-value=1.9e-09 Score=107.19 Aligned_cols=49 Identities=22% Similarity=0.272 Sum_probs=35.1
Q ss_pred cEEEEeE-EEEe-CCceeeEeeeEEEEC---CcEEEEECCCCCcHHHHHHHHHc
Q psy11936 146 DIKVENF-SISA-KGNDLFVNANLLIAN---GRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 146 ~I~l~nl-s~~y-~~~~iL~~vsl~I~~---Ge~igLvGpNGsGKSTLLklLaG 194 (548)
+|+++|| +++| ++..+|+++||+|.+ |++++|+|++||||||++++|++
T Consensus 17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp ---------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred ceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 5899999 9999 778899999999999 99999999999999999999997
No 154
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.60 E-value=6.1e-10 Score=113.86 Aligned_cols=60 Identities=18% Similarity=0.127 Sum_probs=50.7
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEE-------------------ECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEE
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLI-------------------ANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I-------------------~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~ 206 (548)
.|+++||++.|+ +++++++|.+ .+|+++||+|+||||||||+++|+|.....|.+|.|.
T Consensus 37 ~i~~~~v~~~y~--~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~ 114 (308)
T 1sq5_A 37 DLSLEEVAEIYL--PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVE 114 (308)
T ss_dssp TCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred ccchHhHHHHHH--HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEE
Confidence 478899999994 7899999988 8999999999999999999999998421126677777
Q ss_pred E
Q psy11936 207 Y 207 (548)
Q Consensus 207 ~ 207 (548)
+
T Consensus 115 v 115 (308)
T 1sq5_A 115 L 115 (308)
T ss_dssp E
T ss_pred E
Confidence 7
No 155
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.59 E-value=2.3e-08 Score=95.16 Aligned_cols=69 Identities=17% Similarity=0.074 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc-CCeEEEEecCHHHH--HhhcCEEEEEe
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW-KKTLLIVSHDQSFL--DNVCNEIIHLD 363 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~-~~TvIiVSHD~~~l--~~vadrIi~L~ 363 (548)
.|.|+.+|..|++.++.+|..+.++ ++.++|.....+.+.+... +.++|+.+|.+... ...||.+++|+
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 4688999999999998888755443 3455666666676766654 45788888987654 56799988885
No 156
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.56 E-value=1.1e-09 Score=111.68 Aligned_cols=126 Identities=11% Similarity=0.117 Sum_probs=66.9
Q ss_pred EECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEE---eceeeccCchhHHHHHHHhhHHHHHHHHHHHHHh--hh
Q psy11936 169 IANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILY---CEQEVVADDLTAVESVLKADVKRTELLAECAKLE--AA 243 (548)
Q Consensus 169 I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~---~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~ 243 (548)
+..|++++|+||||||||||+++|+ .. .+..|.|.+ .|.++...... .. ....+++.+...+. ..
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~--~~~~G~i~~~~~~G~~~t~~~~~-~~------~~~~g~v~d~pg~~~~~l 231 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GE--ELRTQEVSEKTERGRHTTTGVRL-IP------FGKGSFVGDTPGFSKVEA 231 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SC--CCCCSCC---------CCCCEEE-EE------ETTTEEEESSCCCSSCCG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-Hh--hCcccccccccCCCCCceeeEEE-EE------cCCCcEEEECcCcCcCcc
Confidence 3469999999999999999999999 53 456677766 55443211100 00 00000000000000 00
Q ss_pred cCChhHHHHHHHH------H-HHHHh-cCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 244 DFSSEQQEQLKEI------Y-EELKA-IGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 244 ~~~~~~~~~l~~~------~-~~l~~-~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
....+. +++... + ..+.. ....+...++.++|+.+++.....++++..|||.+++++.|||
T Consensus 232 ~~~lt~-e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 232 TMFVKP-REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGTSCG-GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred cccCCH-HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 001111 111000 0 00111 1223345678999999999865678999999999999999986
No 157
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.55 E-value=1.8e-08 Score=98.01 Aligned_cols=36 Identities=25% Similarity=0.311 Sum_probs=22.9
Q ss_pred eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHH-cC
Q psy11936 160 DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA-SR 195 (548)
Q Consensus 160 ~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLa-G~ 195 (548)
+...++||++.+|+++||+||||||||||+++|+ |.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC--
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 4678999999999999999999999999999999 85
No 158
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.51 E-value=4.1e-08 Score=92.87 Aligned_cols=30 Identities=23% Similarity=0.461 Sum_probs=25.2
Q ss_pred eEEEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 166 NLLIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 166 sl~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
||++.+|+++||+||||||||||+++|+|.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 678889999999999999999999999985
No 159
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.50 E-value=4e-08 Score=100.50 Aligned_cols=74 Identities=15% Similarity=0.121 Sum_probs=64.4
Q ss_pred CcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce----------eee
Q psy11936 465 PILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV----------TFA 528 (548)
Q Consensus 465 ~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~----------~~~ 528 (548)
..|+++||+|+|++++++|+||||.. .|+.+.|.||| |||+|+|+|.++|++|.|+. ++++ .|+
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~ 131 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIG 131 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEE
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceE
Confidence 46999999999976678999999985 89999999996 99999999999999998754 4544 499
Q ss_pred eeeccceeee
Q psy11936 529 YEGMKPLLVD 538 (548)
Q Consensus 529 y~~~~~~~~~ 538 (548)
|+.|+|.+++
T Consensus 132 ~v~Q~~~lf~ 141 (306)
T 3nh6_A 132 VVPQDTVLFN 141 (306)
T ss_dssp EECSSCCCCS
T ss_pred EEecCCccCc
Confidence 9999998764
No 160
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.44 E-value=4.9e-08 Score=108.71 Aligned_cols=168 Identities=15% Similarity=0.056 Sum_probs=91.9
Q ss_pred eEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCch-------hHHHHH
Q psy11936 151 NFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDL-------TAVESV 223 (548)
Q Consensus 151 nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~-------~~~~~~ 223 (548)
+++--||...+++++++.+..|+.++|+||||||||||+++|++.. .....+.+.+.+........ .....+
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l-~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~ 117 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELL-PTETLEDILVFPNPEDENMPRIKTVPACQGRRI 117 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTS-CCSSCEEEEEECCTTCTTSCEEEEEETTHHHHH
T ss_pred ccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccC-CcccCCeEEEeCCcccccCCcEEEEecchHHHH
Confidence 4455578888999999999999999999999999999999999852 22222555554432211100 000000
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHh-----------cCCC---ChHHHHHHHHHhCCCChhhhhcc
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA-----------IGAD---SAEPRARRILAGLGFSRAMQDRA 289 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-----------~~~~---~~~~~~~~~L~~lgl~~~~~~~~ 289 (548)
.... ........ ..... ......+.. .+.. ........++..+... ...
T Consensus 118 ~e~~-------~~~~~~~~--~~r~~----~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~----~~~ 180 (604)
T 3k1j_A 118 VEKY-------REKAKSQE--SVKSS----NMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHD----PFQ 180 (604)
T ss_dssp HHHH-------HHHHHHHT--CC---------------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCC----CC-
T ss_pred HHHH-------HHhhccch--hhhhh----cccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEec----hhh
Confidence 0000 00000000 00000 000000000 0000 0000111122111111 112
Q ss_pred cCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q psy11936 290 TKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG 337 (548)
Q Consensus 290 ~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~ 337 (548)
...+|+|++|++..+++...++.+|+|||... |++.....|.+.|.+
T Consensus 181 ~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 181 SGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp ---CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 35699999999999999999999999999888 899999999999974
No 161
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.43 E-value=6.9e-08 Score=94.50 Aligned_cols=72 Identities=14% Similarity=0.132 Sum_probs=62.8
Q ss_pred CcEEEEeeEEEeC-CCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeeeeeccceeee
Q psy11936 465 PILGLHNVTFAYE-GMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAYEGMKPLLVD 538 (548)
Q Consensus 465 ~vL~l~~vs~~Y~-~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y~~~~~~~~~ 538 (548)
..|+++||+++|+ +++++|+++||+. .|+.+.|.||| |||+|+|+|.++|++|+|+..- +|+|+.|+|.+..
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--~i~~v~q~~~~~~ 82 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQFSWIMP 82 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS--CEEEECSSCCCCS
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC--EEEEEecCCcccC
Confidence 3699999999996 3468999999986 99999999996 8999999999999999987643 6999999997653
No 162
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.42 E-value=7e-08 Score=97.24 Aligned_cols=70 Identities=14% Similarity=0.049 Sum_probs=61.2
Q ss_pred CcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce------------e
Q psy11936 465 PILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV------------T 526 (548)
Q Consensus 465 ~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~------------~ 526 (548)
++|+++||+|+|++..++|+||||+. .|+.+.|.||| |||+|+|+|.++|++|+|+. +.++ .
T Consensus 6 ~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred cEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence 58999999999976556999999986 89999999996 89999999999999998754 4444 4
Q ss_pred eeeeeccc
Q psy11936 527 FAYEGMKP 534 (548)
Q Consensus 527 ~~y~~~~~ 534 (548)
|+|+.|+|
T Consensus 86 ig~v~Q~~ 93 (275)
T 3gfo_A 86 IGIVFQDP 93 (275)
T ss_dssp EEEECSSG
T ss_pred EEEEEcCc
Confidence 99999998
No 163
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.42 E-value=7.8e-08 Score=104.02 Aligned_cols=59 Identities=20% Similarity=0.207 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCC----------CCCCCHHHHHHHHHHHhhc-------CCeEEEEecCHHHHH
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEP----------TNHLDLNAVIWLDNYLQGW-------KKTLLIVSHDQSFLD 353 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEP----------Tn~LD~~s~~~L~~~L~~~-------~~TvIiVSHD~~~l~ 353 (548)
|+++.|..+++|....|.||++||+ ++++|......+..+|..+ +..||.+||+.+.++
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 6788899999999999999999999 3466665555455544322 357888999987654
No 164
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.40 E-value=4.9e-09 Score=98.78 Aligned_cols=36 Identities=22% Similarity=0.110 Sum_probs=32.0
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q psy11936 300 RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG 337 (548)
Q Consensus 300 RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~ 337 (548)
.+.+|++|+.+|.++++| ||+||..++..+.+.|.+
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 467899999999999999 999999999988887754
No 165
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.40 E-value=9.6e-08 Score=94.27 Aligned_cols=73 Identities=14% Similarity=0.162 Sum_probs=61.3
Q ss_pred cEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce----------eeee
Q psy11936 466 ILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV----------TFAY 529 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~----------~~~y 529 (548)
+|+++||+|+|++++++|+|+||+. .|+.+.|.||| |||+|+|+|.++|++|.|+. ++++ .|+|
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 3789999999954468999999985 99999999996 89999999999999998764 3333 4899
Q ss_pred eeccceeee
Q psy11936 530 EGMKPLLVD 538 (548)
Q Consensus 530 ~~~~~~~~~ 538 (548)
+.|+|.+.+
T Consensus 81 v~q~~~l~~ 89 (243)
T 1mv5_A 81 VSQDSAIMA 89 (243)
T ss_dssp ECCSSCCCC
T ss_pred EcCCCcccc
Confidence 999987653
No 166
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.38 E-value=8.6e-08 Score=95.43 Aligned_cols=73 Identities=12% Similarity=0.013 Sum_probs=62.0
Q ss_pred CCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce-----------e
Q psy11936 464 PPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV-----------T 526 (548)
Q Consensus 464 ~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~-----------~ 526 (548)
.++|+++||+++|++ +++|+|+||+. .|+.+.|.||| |||+|+|+|.++|++|+|+. ++++ .
T Consensus 5 ~~~l~i~~l~~~y~~-~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 5 MEILRTENIVKYFGE-FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp CEEEEEEEEEEEETT-EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred CcEEEEeeeEEEECC-EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 357999999999965 67999999985 99999999996 89999999999999998754 3333 4
Q ss_pred eeeeeccceee
Q psy11936 527 FAYEGMKPLLV 537 (548)
Q Consensus 527 ~~y~~~~~~~~ 537 (548)
|+|+.|+|.+.
T Consensus 84 i~~v~q~~~l~ 94 (257)
T 1g6h_A 84 IVRTFQTPQPL 94 (257)
T ss_dssp EEECCCCCGGG
T ss_pred EEEEccCCccC
Confidence 89999998654
No 167
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.38 E-value=8.8e-08 Score=94.39 Aligned_cols=73 Identities=7% Similarity=-0.043 Sum_probs=62.2
Q ss_pred CCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce-----------e
Q psy11936 464 PPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV-----------T 526 (548)
Q Consensus 464 ~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~-----------~ 526 (548)
.++|+++||+++|++ +++|+|+||+. .|+.+.|.||| |||+|+|.|.++|++|+|+. ++++ .
T Consensus 4 ~~~l~~~~l~~~y~~-~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGA-IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp SEEEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred CceEEEEeEEEEECC-eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 357999999999965 67999999986 99999999996 89999999999999998754 3333 3
Q ss_pred eeeeeccceee
Q psy11936 527 FAYEGMKPLLV 537 (548)
Q Consensus 527 ~~y~~~~~~~~ 537 (548)
|+|+.|+|.+.
T Consensus 83 i~~v~q~~~l~ 93 (240)
T 1ji0_A 83 IALVPEGRRIF 93 (240)
T ss_dssp EEEECSSCCCC
T ss_pred EEEEecCCccC
Confidence 99999998664
No 168
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.36 E-value=9e-08 Score=96.61 Aligned_cols=72 Identities=10% Similarity=0.044 Sum_probs=61.2
Q ss_pred CCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce-----------
Q psy11936 463 QPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV----------- 525 (548)
Q Consensus 463 ~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~----------- 525 (548)
+.++|+++||+++|++ +++|+|+||+. .|+.+.|.||| |||+|+|+|.++|++|+|+. ++++
T Consensus 18 ~~~~l~~~~l~~~y~~-~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 96 (279)
T 2ihy_A 18 SHMLIQLDQIGRMKQG-KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96 (279)
T ss_dssp -CEEEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred CCceEEEEeEEEEECC-EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence 4568999999999965 67999999985 99999999996 89999999999999998754 4444
Q ss_pred -eeeeeeccce
Q psy11936 526 -TFAYEGMKPL 535 (548)
Q Consensus 526 -~~~y~~~~~~ 535 (548)
.|+|+.|+|.
T Consensus 97 ~~i~~v~Q~~~ 107 (279)
T 2ihy_A 97 QHIGFVSHSLL 107 (279)
T ss_dssp TTEEEECHHHH
T ss_pred CcEEEEEcCcc
Confidence 3899999974
No 169
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.36 E-value=6.3e-09 Score=102.04 Aligned_cols=57 Identities=16% Similarity=0.183 Sum_probs=39.9
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV 212 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i 212 (548)
.|+++|++..|+. +|+|.+ ++++|+|||||||||||++|+|. ..|.+|.|.+.+..+
T Consensus 9 ~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~--~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 9 SLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTA--LIPDLTLLHFRNTTE 65 (227)
T ss_dssp EEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHH--HSCCTTTC-------
T ss_pred EEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcc--cccCCCeEEECCEEc
Confidence 4788888765542 456666 89999999999999999999985 356777787776654
No 170
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.36 E-value=9.8e-07 Score=91.72 Aligned_cols=62 Identities=16% Similarity=0.149 Sum_probs=46.7
Q ss_pred cccCCCCHHHHHHHHHHHHHccCCCEEEEe-CCCCCCCHHHHHHHHHHHhh-c-CCeEEEEe--cCHH
Q psy11936 288 RATKNFSGGWRMRVSLARALYIEPTLLLLD-EPTNHLDLNAVIWLDNYLQG-W-KKTLLIVS--HDQS 350 (548)
Q Consensus 288 ~~~~~LSGGqkqRvaLAraL~~~P~lLLLD-EPTn~LD~~s~~~L~~~L~~-~-~~TvIiVS--HD~~ 350 (548)
.++..+|+|+++++. +.+...++-|+++| +|++++|......+...+.. . +.++|+|. ||+.
T Consensus 227 ~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 227 RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 456789999998876 55556777889999 99999999876544444443 3 57888888 8874
No 171
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.35 E-value=1.1e-07 Score=94.83 Aligned_cols=73 Identities=12% Similarity=-0.020 Sum_probs=62.1
Q ss_pred CCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce---------eee
Q psy11936 464 PPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV---------TFA 528 (548)
Q Consensus 464 ~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~---------~~~ 528 (548)
-++|+++||+++|++ +++|+++||.. .|+.+.|.||| |||+|+|+|.++|++|+|+. ++++ .|+
T Consensus 13 ~~~l~i~~l~~~y~~-~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~ 91 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGK-KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLIS 91 (256)
T ss_dssp -CCEEEEEEEEEETT-EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEE
T ss_pred CCeEEEEEEEEEECC-EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEE
Confidence 468999999999964 68999999985 99999999996 89999999999999998754 4443 489
Q ss_pred eeeccceee
Q psy11936 529 YEGMKPLLV 537 (548)
Q Consensus 529 y~~~~~~~~ 537 (548)
|+.|.|.+.
T Consensus 92 ~v~q~~~l~ 100 (256)
T 1vpl_A 92 YLPEEAGAY 100 (256)
T ss_dssp EECTTCCCC
T ss_pred EEcCCCCCC
Confidence 999998654
No 172
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.35 E-value=1.1e-07 Score=93.61 Aligned_cols=70 Identities=11% Similarity=0.100 Sum_probs=61.3
Q ss_pred cEEEEeeEEEeCC-CCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeeeeeccceee
Q psy11936 466 ILGLHNVTFAYEG-MKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAYEGMKPLLV 537 (548)
Q Consensus 466 vL~l~~vs~~Y~~-~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y~~~~~~~~ 537 (548)
.|+++||+++|++ ++++|+|+||+. .|+.+.|.||| |||+|+|.|.++|++|.|+..- +|+|+.|+|.+.
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~~~ 78 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG--SVAYVPQQAWIQ 78 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS--CEEEECSSCCCC
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC--EEEEEcCCCcCC
Confidence 5899999999963 368999999985 99999999996 8999999999999999987644 599999998653
No 173
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.34 E-value=1.5e-07 Score=94.61 Aligned_cols=74 Identities=20% Similarity=0.214 Sum_probs=62.8
Q ss_pred CcEEEEeeEEEeCC--CCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce----------e
Q psy11936 465 PILGLHNVTFAYEG--MKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV----------T 526 (548)
Q Consensus 465 ~vL~l~~vs~~Y~~--~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~----------~ 526 (548)
.+|+++||+|+|++ .+++|+|+||.. .|+.+.|.||| |||+|+|+|.++|++|.|+. ++++ +
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 57999999999964 267999999985 99999999996 99999999999999998764 3443 4
Q ss_pred eeeeeccceeee
Q psy11936 527 FAYEGMKPLLVD 538 (548)
Q Consensus 527 ~~y~~~~~~~~~ 538 (548)
|+|+.|+|.+.+
T Consensus 95 i~~v~Q~~~l~~ 106 (271)
T 2ixe_A 95 VAAVGQEPLLFG 106 (271)
T ss_dssp EEEECSSCCCCS
T ss_pred EEEEecCCcccc
Confidence 899999997653
No 174
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.33 E-value=3.5e-07 Score=85.07 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=30.7
Q ss_pred ee--EeeeEEEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 161 LF--VNANLLIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 161 iL--~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
.+ ++++|.+.+| +++|+||||||||||+++|++.
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 45 6889999999 9999999999999999999864
No 175
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.32 E-value=1.7e-07 Score=93.55 Aligned_cols=72 Identities=14% Similarity=0.035 Sum_probs=61.1
Q ss_pred CcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce-------------
Q psy11936 465 PILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV------------- 525 (548)
Q Consensus 465 ~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~------------- 525 (548)
++|+++||+++|++ +++|+|+||+. .|+.+.|.||| |||+|+|+|.++|++|.|+. ++++
T Consensus 5 ~~l~i~~l~~~y~~-~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 5 NKLHVIDLHKRYGG-HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CCEEEEEEEEEETT-EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred ceEEEeeEEEEECC-EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence 47999999999964 67999999985 99999999996 99999999999999998754 3333
Q ss_pred ----------eeeeeeccceee
Q psy11936 526 ----------TFAYEGMKPLLV 537 (548)
Q Consensus 526 ----------~~~y~~~~~~~~ 537 (548)
.|+|+.|+|.+.
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~ 105 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHFNLW 105 (262)
T ss_dssp CHHHHHHHHHHEEEECSSCCCC
T ss_pred ChhhHHHHhcceEEEecCcccC
Confidence 389999998654
No 176
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.32 E-value=3.3e-07 Score=104.85 Aligned_cols=71 Identities=15% Similarity=0.215 Sum_probs=55.0
Q ss_pred cccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHhhc--C-CeEEE-EecCHHHHHhhcCE
Q psy11936 288 RATKNFSGGWRMRVSLARALYIEPTLLLLDEPTN-HLDLNAVIWLDNYLQGW--K-KTLLI-VSHDQSFLDNVCNE 358 (548)
Q Consensus 288 ~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn-~LD~~s~~~L~~~L~~~--~-~TvIi-VSHD~~~l~~vadr 358 (548)
..+.-+|+|+.+|..++++++.++++||+|||.. +||......+...+... . .+|++ +|||...+..+++.
T Consensus 186 ~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~ 261 (773)
T 2xau_A 186 TILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFND 261 (773)
T ss_dssp CSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTS
T ss_pred CCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcC
Confidence 4566789999999999999999999999999997 89987655544444332 2 35666 49998888777764
No 177
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.32 E-value=1.4e-07 Score=92.08 Aligned_cols=72 Identities=14% Similarity=0.048 Sum_probs=61.2
Q ss_pred CcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce-------------
Q psy11936 465 PILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV------------- 525 (548)
Q Consensus 465 ~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~------------- 525 (548)
++|+++||+++|++ +++|+|+||.. .|+.+.|.||| |||+|+|+|.++|++|.|+. ++++
T Consensus 3 ~~l~~~~l~~~y~~-~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 3 EILRAENIKKVIRG-YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp EEEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred cEEEEEeEEEEECC-EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence 36999999999965 67999999986 99999999996 89999999999999998754 3332
Q ss_pred -eeeeeeccceee
Q psy11936 526 -TFAYEGMKPLLV 537 (548)
Q Consensus 526 -~~~y~~~~~~~~ 537 (548)
.|+|+.|+|.+.
T Consensus 82 ~~i~~v~q~~~l~ 94 (224)
T 2pcj_A 82 RKLGFVFQFHYLI 94 (224)
T ss_dssp HHEEEECSSCCCC
T ss_pred CcEEEEecCcccC
Confidence 399999998654
No 178
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.31 E-value=1.7e-07 Score=93.69 Aligned_cols=72 Identities=10% Similarity=0.009 Sum_probs=61.4
Q ss_pred CcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce------------e
Q psy11936 465 PILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV------------T 526 (548)
Q Consensus 465 ~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~------------~ 526 (548)
++|+++||+++|++ +++|+|+||.. .|+.+.|.||| |||+|+|+|.++|++|+|+. ++++ +
T Consensus 23 ~~l~i~~l~~~y~~-~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 23 QMIDVHQLKKSFGS-LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp CSEEEEEEEEEETT-EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred heEEEEeEEEEECC-EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 47999999999964 67999999985 99999999996 99999999999999998754 4444 3
Q ss_pred eeeeeccceee
Q psy11936 527 FAYEGMKPLLV 537 (548)
Q Consensus 527 ~~y~~~~~~~~ 537 (548)
|+|+.|+|.+.
T Consensus 102 i~~v~Q~~~l~ 112 (263)
T 2olj_A 102 VGMVFQRFNLF 112 (263)
T ss_dssp EEEECSSCCCC
T ss_pred EEEEeCCCcCC
Confidence 89999998654
No 179
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.31 E-value=1.5e-07 Score=92.56 Aligned_cols=73 Identities=15% Similarity=0.020 Sum_probs=61.0
Q ss_pred cEEEEeeEEEeCCC---CcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce-----------
Q psy11936 466 ILGLHNVTFAYEGM---KPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV----------- 525 (548)
Q Consensus 466 vL~l~~vs~~Y~~~---~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~----------- 525 (548)
+|+++||+|+|+++ .++|+|+||+. .|+.+.|.||| |||+|+|+|.++|++|+|+. +.++
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 47899999999742 36999999985 89999999996 89999999999999998765 3322
Q ss_pred ---eeeeeeccceeee
Q psy11936 526 ---TFAYEGMKPLLVD 538 (548)
Q Consensus 526 ---~~~y~~~~~~~~~ 538 (548)
.|+|+.|+|.+..
T Consensus 81 ~~~~i~~v~Q~~~l~~ 96 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIP 96 (235)
T ss_dssp HHHHEEEECTTCCCCT
T ss_pred hhccEEEEecCCccCC
Confidence 4999999997643
No 180
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.30 E-value=1.5e-07 Score=93.17 Aligned_cols=73 Identities=16% Similarity=0.089 Sum_probs=61.1
Q ss_pred cEEEEeeEEEeC-CCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce----------eee
Q psy11936 466 ILGLHNVTFAYE-GMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV----------TFA 528 (548)
Q Consensus 466 vL~l~~vs~~Y~-~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~----------~~~ 528 (548)
-++++||+|+|+ +++++|+|+||+. .|+.+.|.||| |||+|+|+|.++|++|+|+. +.++ .|+
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~ 86 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 86 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence 378999999994 3467999999986 99999999996 89999999999999998754 3333 489
Q ss_pred eeeccceeee
Q psy11936 529 YEGMKPLLVD 538 (548)
Q Consensus 529 y~~~~~~~~~ 538 (548)
|+.|+|.+.+
T Consensus 87 ~v~Q~~~l~~ 96 (247)
T 2ff7_A 87 VVLQDNVLLN 96 (247)
T ss_dssp EECSSCCCTT
T ss_pred EEeCCCcccc
Confidence 9999997653
No 181
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.30 E-value=3.1e-06 Score=87.60 Aligned_cols=28 Identities=21% Similarity=0.103 Sum_probs=25.5
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
-|.+|+++.|.|++|||||||+..|+..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999998863
No 182
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.30 E-value=2.1e-07 Score=90.35 Aligned_cols=72 Identities=14% Similarity=0.158 Sum_probs=61.6
Q ss_pred CCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce-----eeeeeec
Q psy11936 464 PPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV-----TFAYEGM 532 (548)
Q Consensus 464 ~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~-----~~~y~~~ 532 (548)
...|+++||+++|++ ++|+|+||+. .|+.+.|.||| |||+|+|+|.++|++|.|+. +.++ .|+|+.|
T Consensus 8 ~~~l~~~~ls~~y~~--~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q 85 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK--PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE 85 (214)
T ss_dssp -CEEEEEEEEEESSS--EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECS
T ss_pred CceEEEEEEEEEeCC--eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeC
Confidence 468999999999965 7999999985 89999999996 89999999999999998764 3443 5899999
Q ss_pred cceee
Q psy11936 533 KPLLV 537 (548)
Q Consensus 533 ~~~~~ 537 (548)
+|.+.
T Consensus 86 ~~~~~ 90 (214)
T 1sgw_A 86 EIIVP 90 (214)
T ss_dssp SCCCC
T ss_pred CCcCC
Confidence 98654
No 183
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.29 E-value=2.7e-07 Score=92.41 Aligned_cols=72 Identities=14% Similarity=0.057 Sum_probs=61.9
Q ss_pred CCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce----------ee
Q psy11936 464 PPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV----------TF 527 (548)
Q Consensus 464 ~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~----------~~ 527 (548)
.++|+++||+++|++ +++|+||||+. .|+.+.|.||| |||+|+|+|.++|++|+|+. ++++ .+
T Consensus 9 ~~~l~~~~l~~~~~~-~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 9 VALLEASHLHYHVQQ-QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp CCEEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred cceEEEEeEEEEeCC-eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 368999999999965 68999999985 89999999996 89999999999999998754 4444 38
Q ss_pred eeeecccee
Q psy11936 528 AYEGMKPLL 536 (548)
Q Consensus 528 ~y~~~~~~~ 536 (548)
+|+.|.|.+
T Consensus 88 ~~v~q~~~~ 96 (266)
T 4g1u_C 88 AVMRQYSEL 96 (266)
T ss_dssp EEECSCCCC
T ss_pred EEEecCCcc
Confidence 999998865
No 184
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.28 E-value=2.6e-07 Score=91.86 Aligned_cols=70 Identities=13% Similarity=0.074 Sum_probs=61.0
Q ss_pred cEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeeeeeccceee
Q psy11936 466 ILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAYEGMKPLLV 537 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y~~~~~~~~ 537 (548)
+|+++||+++|++++++|+|+||.. .|+.+.|.||| |||+|+|+|.++|++|+|+.. -.|+|+.|+|.+.
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~--~~i~~v~q~~~~~ 78 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVY--QSIGFVPQFFSSP 78 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEEC--SCEEEECSCCCCS
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEe--ccEEEEcCCCccC
Confidence 6899999999972368999999985 99999999996 899999999999999999733 2589999998664
No 185
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.27 E-value=4.6e-08 Score=92.31 Aligned_cols=35 Identities=23% Similarity=0.136 Sum_probs=29.5
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG 337 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~ 337 (548)
...|++|+.+|.++++| ||+||...+..+.+.|.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 35689999999999999 999999888777776654
No 186
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.25 E-value=5.2e-06 Score=85.68 Aligned_cols=47 Identities=23% Similarity=0.268 Sum_probs=36.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhh------cCCeEEEEecCHHHHHhhc
Q psy11936 309 IEPTLLLLDEPTNHLDLNAVIWLDNYLQG------WKKTLLIVSHDQSFLDNVC 356 (548)
Q Consensus 309 ~~P~lLLLDEPTn~LD~~s~~~L~~~L~~------~~~TvIiVSHD~~~l~~va 356 (548)
..|.+|+|||+... |......|..++.. .+.++|++||+..+...+.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~ 176 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLD 176 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSC
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhC
Confidence 45889999999876 98888888888754 3568999999987665543
No 187
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.24 E-value=1.5e-06 Score=90.02 Aligned_cols=126 Identities=11% Similarity=0.089 Sum_probs=76.1
Q ss_pred eEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHHHh
Q psy11936 162 FVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLE 241 (548)
Q Consensus 162 L~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (548)
|+.+.--+.+|+.+.|.|++|+|||||+..|+.... .....+.|+.-+... ..+ .
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a--~~g~~Vl~fSlEms~---~ql-------------~------- 90 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL--NDDRGVAVFSLEMSA---EQL-------------A------- 90 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH--HTTCEEEEEESSSCH---HHH-------------H-------
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH--HcCCeEEEEeCCCCH---HHH-------------H-------
Confidence 444444688999999999999999999988874311 123455555433210 000 0
Q ss_pred hhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC
Q psy11936 242 AADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTN 321 (548)
Q Consensus 242 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn 321 (548)
.++......+.+. .+ .-..||+++.+|+..|...+.+++++|.|+|+.
T Consensus 91 ----------------------------~Rlls~~~~v~~~-~l---~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~ 138 (338)
T 4a1f_A 91 ----------------------------LRALSDLTSINMH-DL---ESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYV 138 (338)
T ss_dssp ----------------------------HHHHHHHHCCCHH-HH---HHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTC
T ss_pred ----------------------------HHHHHHhhCCCHH-HH---hcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCC
Confidence 0011111122221 11 124799999999999999999999999999865
Q ss_pred CCCHHHHHHHHH-HHhhc-CCeEEEEe
Q psy11936 322 HLDLNAVIWLDN-YLQGW-KKTLLIVS 346 (548)
Q Consensus 322 ~LD~~s~~~L~~-~L~~~-~~TvIiVS 346 (548)
. +..+..... +.+.+ +..+|||-
T Consensus 139 s--i~~i~~~ir~l~~~~gg~~lIVID 163 (338)
T 4a1f_A 139 R--IEQIRLQLRKLKSQHKELGIAFID 163 (338)
T ss_dssp C--HHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred c--HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 4 444433333 33344 45666654
No 188
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.23 E-value=2.7e-07 Score=96.43 Aligned_cols=77 Identities=10% Similarity=-0.010 Sum_probs=62.8
Q ss_pred CCCCcEEEEeeEEEeCCC---CcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce-------
Q psy11936 462 LQPPILGLHNVTFAYEGM---KPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV------- 525 (548)
Q Consensus 462 ~~~~vL~l~~vs~~Y~~~---~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~------- 525 (548)
...++|+++||+++|+++ ..+|+||||+. .|+.+.|.||| |||+|+|+|.++|++|+|+. +.++
T Consensus 20 ~~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~ 99 (366)
T 3tui_C 20 DDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESE 99 (366)
T ss_dssp ---CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHH
T ss_pred CCCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHH
Confidence 356799999999999642 36899999985 99999999996 99999999999999998754 4443
Q ss_pred ------eeeeeeccceeee
Q psy11936 526 ------TFAYEGMKPLLVD 538 (548)
Q Consensus 526 ------~~~y~~~~~~~~~ 538 (548)
.|+|+.|+|.+..
T Consensus 100 ~~~~r~~Ig~v~Q~~~l~~ 118 (366)
T 3tui_C 100 LTKARRQIGMIFQHFNLLS 118 (366)
T ss_dssp HHHHHTTEEEECSSCCCCT
T ss_pred HHHHhCcEEEEeCCCccCC
Confidence 4999999997653
No 189
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.22 E-value=1.3e-05 Score=83.51 Aligned_cols=41 Identities=22% Similarity=0.220 Sum_probs=31.5
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEece
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQ 210 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q 210 (548)
-|.+|+++.|+||||||||||+..|++.. .+..+.+.|...
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~--~~~gg~VlyId~ 97 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEA--QKMGGVAAFIDA 97 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEES
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEec
Confidence 47899999999999999999999998632 233455666543
No 190
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.21 E-value=4.3e-07 Score=90.83 Aligned_cols=69 Identities=14% Similarity=0.083 Sum_probs=59.1
Q ss_pred cEEEEeeEEEeC-CC---CcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce-------eee
Q psy11936 466 ILGLHNVTFAYE-GM---KPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV-------TFA 528 (548)
Q Consensus 466 vL~l~~vs~~Y~-~~---~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~-------~~~ 528 (548)
+|+++||+++|+ ++ +++|+|+||.. .|+.+.|.||| |||+|+|+|.++|++|.|+. ++++ .|+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 589999999997 33 57999999985 99999999996 89999999999999998765 4443 489
Q ss_pred eeeccc
Q psy11936 529 YEGMKP 534 (548)
Q Consensus 529 y~~~~~ 534 (548)
|+.|+|
T Consensus 82 ~v~q~~ 87 (266)
T 2yz2_A 82 IAFQYP 87 (266)
T ss_dssp EECSSG
T ss_pred EEeccc
Confidence 999997
No 191
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.21 E-value=1.5e-07 Score=89.51 Aligned_cols=46 Identities=22% Similarity=0.197 Sum_probs=36.1
Q ss_pred EeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 150 ENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 150 ~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
+|++..++.....+.+++...+|++++|+|+||||||||+++|++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4677788877788888888899999999999999999999999974
No 192
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.20 E-value=8e-06 Score=83.70 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=25.1
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
-|.+|+++.|.|++|||||||+..|+.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHH
Confidence 578999999999999999999998875
No 193
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.17 E-value=7.8e-07 Score=84.34 Aligned_cols=37 Identities=30% Similarity=0.142 Sum_probs=23.8
Q ss_pred ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 159 NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 159 ~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
...++||||++.+|.+++|+|++||||||+.+.|++.
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4589999999999999999999999999999999863
No 194
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.16 E-value=6.2e-07 Score=85.36 Aligned_cols=56 Identities=14% Similarity=0.099 Sum_probs=39.4
Q ss_pred HHH-HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEe
Q psy11936 303 LAR-ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLD 363 (548)
Q Consensus 303 LAr-aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~ 363 (548)
.|+ +++.+|.+++|||||+++|..+...+...|.....- +.++|. . ..||+|++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-~~~a~~--~--~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-MESSKE--P--GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-TTGGGS--T--TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHhhc--c--CCceEEEECC
Confidence 456 788899999999999999987777776666543211 244562 1 4689988765
No 195
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.13 E-value=9.3e-07 Score=98.30 Aligned_cols=74 Identities=18% Similarity=0.160 Sum_probs=64.5
Q ss_pred CcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce----------eee
Q psy11936 465 PILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV----------TFA 528 (548)
Q Consensus 465 ~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~----------~~~ 528 (548)
.-|+++||+|+|++++++++|+||+. .|+++.|.||| |||+|+|+|.++|++|.|+. ++++ .++
T Consensus 353 ~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 432 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIG 432 (598)
T ss_dssp CCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEE
T ss_pred CeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceE
Confidence 35999999999976678999999986 89999999995 99999999999999998754 5555 599
Q ss_pred eeeccceeee
Q psy11936 529 YEGMKPLLVD 538 (548)
Q Consensus 529 y~~~~~~~~~ 538 (548)
|+.|+|.+.+
T Consensus 433 ~v~Q~~~lf~ 442 (598)
T 3qf4_B 433 IVLQDTILFS 442 (598)
T ss_dssp EECTTCCCCS
T ss_pred EEeCCCcccc
Confidence 9999998764
No 196
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.13 E-value=6.3e-07 Score=93.39 Aligned_cols=76 Identities=11% Similarity=-0.005 Sum_probs=63.3
Q ss_pred CCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce--------ee
Q psy11936 462 LQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV--------TF 527 (548)
Q Consensus 462 ~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~--------~~ 527 (548)
.|...|+++||+++|++++.+|+|+||+. .|+.+.|.||| |||+|+|.|.++|++|.|+. ++++ .|
T Consensus 10 ~~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~i 89 (355)
T 1z47_A 10 HGSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNV 89 (355)
T ss_dssp -CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSE
T ss_pred CCCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcE
Confidence 36679999999999933367999999986 89999999996 99999999999999998754 3443 58
Q ss_pred eeeeccceee
Q psy11936 528 AYEGMKPLLV 537 (548)
Q Consensus 528 ~y~~~~~~~~ 537 (548)
+|+.|++.+.
T Consensus 90 g~v~Q~~~l~ 99 (355)
T 1z47_A 90 GLVFQNYALF 99 (355)
T ss_dssp EEECGGGCCC
T ss_pred EEEecCcccC
Confidence 9999998664
No 197
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.12 E-value=6.1e-07 Score=93.61 Aligned_cols=72 Identities=13% Similarity=0.101 Sum_probs=61.6
Q ss_pred CcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce------------e
Q psy11936 465 PILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV------------T 526 (548)
Q Consensus 465 ~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~------------~ 526 (548)
+.|+++||+++|++ ..+|+|+||+. .|+.+.|.||| |||+|+|.|.++|++|+|+. ++++ .
T Consensus 3 ~~l~i~~ls~~y~~-~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ 81 (359)
T 3fvq_A 3 AALHIGHLSKSFQN-TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR 81 (359)
T ss_dssp CCEEEEEEEEEETT-EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSC
T ss_pred cEEEEEeEEEEECC-EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCC
Confidence 37999999999965 68999999985 89999999996 89999999999999998753 4443 4
Q ss_pred eeeeeccceee
Q psy11936 527 FAYEGMKPLLV 537 (548)
Q Consensus 527 ~~y~~~~~~~~ 537 (548)
|+|+.|++.|.
T Consensus 82 ig~vfQ~~~l~ 92 (359)
T 3fvq_A 82 LGYLVQEGVLF 92 (359)
T ss_dssp CEEECTTCCCC
T ss_pred EEEEeCCCcCC
Confidence 99999998765
No 198
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.12 E-value=1.1e-06 Score=82.85 Aligned_cols=29 Identities=31% Similarity=0.385 Sum_probs=25.1
Q ss_pred EEEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 167 LLIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 167 l~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
++|.+|++++|+||||||||||+++|++.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999999999999999985
No 199
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.11 E-value=7.8e-07 Score=88.71 Aligned_cols=73 Identities=16% Similarity=0.083 Sum_probs=60.5
Q ss_pred CcEEEEeeEEEeCCC--CcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce----------e
Q psy11936 465 PILGLHNVTFAYEGM--KPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV----------T 526 (548)
Q Consensus 465 ~vL~l~~vs~~Y~~~--~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~----------~ 526 (548)
..|+++||+|+|++. +++|+|+||+. .|+.+.|.||| |||+|+|+|.++| +|.|+. ++++ .
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 479999999999753 46999999985 99999999996 9999999999987 687643 4443 4
Q ss_pred eeeeeccceeee
Q psy11936 527 FAYEGMKPLLVD 538 (548)
Q Consensus 527 ~~y~~~~~~~~~ 538 (548)
|+|+.|+|.+.+
T Consensus 95 i~~v~Q~~~l~~ 106 (260)
T 2ghi_A 95 IGIVPQDTILFN 106 (260)
T ss_dssp EEEECSSCCCCS
T ss_pred EEEEcCCCcccc
Confidence 899999997653
No 200
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.10 E-value=1.4e-06 Score=96.45 Aligned_cols=74 Identities=23% Similarity=0.180 Sum_probs=63.6
Q ss_pred CcEEEEeeEEEeCCC-CcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce----------ee
Q psy11936 465 PILGLHNVTFAYEGM-KPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV----------TF 527 (548)
Q Consensus 465 ~vL~l~~vs~~Y~~~-~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~----------~~ 527 (548)
..|+++||+|+|+++ +++++|+||+. .|+.+.|.||| |||+|+|+|.++|++|.|+. ++++ .|
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCe
Confidence 469999999999753 67999999985 99999999995 89999999999999998754 4444 59
Q ss_pred eeeeccceeee
Q psy11936 528 AYEGMKPLLVD 538 (548)
Q Consensus 528 ~y~~~~~~~~~ 538 (548)
+|+.|+|.+.+
T Consensus 420 ~~v~Q~~~l~~ 430 (582)
T 3b5x_A 420 ALVSQNVHLFN 430 (582)
T ss_pred EEEcCCCcccc
Confidence 99999998764
No 201
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.10 E-value=1.3e-06 Score=96.64 Aligned_cols=74 Identities=16% Similarity=0.141 Sum_probs=63.8
Q ss_pred CcEEEEeeEEEeCC-CCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce----------ee
Q psy11936 465 PILGLHNVTFAYEG-MKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV----------TF 527 (548)
Q Consensus 465 ~vL~l~~vs~~Y~~-~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~----------~~ 527 (548)
.-|+++||+|+|++ .+++++|+||+. .|+.+.|.||| |||+|+|+|.++|++|+|+. ++++ .+
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i 417 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 417 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 46999999999975 367999999985 89999999996 89999999999999998754 5554 49
Q ss_pred eeeeccceeee
Q psy11936 528 AYEGMKPLLVD 538 (548)
Q Consensus 528 ~y~~~~~~~~~ 538 (548)
+|+.|+|.+.+
T Consensus 418 ~~v~Q~~~l~~ 428 (578)
T 4a82_A 418 GLVQQDNILFS 428 (578)
T ss_dssp EEECSSCCCCS
T ss_pred EEEeCCCccCc
Confidence 99999998864
No 202
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.08 E-value=1.2e-06 Score=82.25 Aligned_cols=24 Identities=38% Similarity=0.702 Sum_probs=22.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
|+++||+||||||||||+++|+|.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 678999999999999999999985
No 203
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.08 E-value=5.7e-07 Score=89.95 Aligned_cols=70 Identities=17% Similarity=0.110 Sum_probs=58.6
Q ss_pred cEEEEeeEEEeCCC---CcccccCCccCCCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce-------eee-e
Q psy11936 466 ILGLHNVTFAYEGM---KPLLMSKADEDQGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV-------TFA-Y 529 (548)
Q Consensus 466 vL~l~~vs~~Y~~~---~~ll~~v~~~~~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~-------~~~-y 529 (548)
+|+++||+++|++. +++|+|+||+..|+.+.|.||| |||+|+|+|.+ |++|.|+. ++++ .++ |
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~ 79 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVNGEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTN 79 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEECSSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEEC
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEECCEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEE
Confidence 47899999999642 5799999998449999999996 89999999999 99998765 3344 589 9
Q ss_pred eecccee
Q psy11936 530 EGMKPLL 536 (548)
Q Consensus 530 ~~~~~~~ 536 (548)
+.|+|.+
T Consensus 80 v~Q~~~l 86 (263)
T 2pjz_A 80 LPEAYEI 86 (263)
T ss_dssp CGGGSCT
T ss_pred eCCCCcc
Confidence 9999865
No 204
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.06 E-value=6.2e-07 Score=89.80 Aligned_cols=74 Identities=11% Similarity=0.047 Sum_probs=59.5
Q ss_pred CCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCC--CCCCCCCeee-ccce---------
Q psy11936 463 QPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPD--PPPLQPPILG-LHNV--------- 525 (548)
Q Consensus 463 ~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~--~~~~~~~~~~-~~n~--------- 525 (548)
+.++|+++||+++|++ +++|+|+||+. .|+.+.|.||| |||+|+|+|. .+|++|+|+. +.++
T Consensus 17 ~~~~l~~~~l~~~y~~-~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 95 (267)
T 2zu0_C 17 GSHMLSIKDLHVSVED-KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRA 95 (267)
T ss_dssp ---CEEEEEEEEEETT-EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHH
T ss_pred CCceEEEEeEEEEECC-EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHh
Confidence 3468999999999964 68999999985 99999999996 8999999999 4688998754 3332
Q ss_pred --eeeeeeccceee
Q psy11936 526 --TFAYEGMKPLLV 537 (548)
Q Consensus 526 --~~~y~~~~~~~~ 537 (548)
.|+|+.|+|.+.
T Consensus 96 ~~~i~~v~Q~~~l~ 109 (267)
T 2zu0_C 96 GEGIFMAFQYPVEI 109 (267)
T ss_dssp HHTEEEECSSCCCC
T ss_pred hCCEEEEccCcccc
Confidence 389999998653
No 205
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.04 E-value=1.6e-06 Score=96.09 Aligned_cols=74 Identities=22% Similarity=0.134 Sum_probs=63.5
Q ss_pred CcEEEEeeEEEeCCC-CcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce----------ee
Q psy11936 465 PILGLHNVTFAYEGM-KPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV----------TF 527 (548)
Q Consensus 465 ~vL~l~~vs~~Y~~~-~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~----------~~ 527 (548)
..|+++||+|+|+++ +++|+|+||+. .|+.+.|.||| |||+|+|+|.++|++|.|+. ++++ .|
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhC
Confidence 469999999999743 68999999985 99999999995 99999999999999998754 4444 49
Q ss_pred eeeeccceeee
Q psy11936 528 AYEGMKPLLVD 538 (548)
Q Consensus 528 ~y~~~~~~~~~ 538 (548)
+|+.|+|.+.+
T Consensus 420 ~~v~Q~~~l~~ 430 (582)
T 3b60_A 420 ALVSQNVHLFN 430 (582)
T ss_dssp EEECSSCCCCS
T ss_pred eEEccCCcCCC
Confidence 99999998764
No 206
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.04 E-value=1.1e-07 Score=97.87 Aligned_cols=62 Identities=15% Similarity=0.135 Sum_probs=47.5
Q ss_pred eEEEEeCCceeeEeeeEEEECCc------EEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee
Q psy11936 151 NFSISAKGNDLFVNANLLIANGR------RYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV 212 (548)
Q Consensus 151 nls~~y~~~~iL~~vsl~I~~Ge------~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i 212 (548)
.|++.|++...|.+++..|..+. ++||+||||||||||+++|++..-..+..+.+.+.+++.
T Consensus 65 ll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 65 LLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred HHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 35566777778888888887776 999999999999999999998533335566666666544
No 207
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.03 E-value=2.3e-06 Score=81.15 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=24.0
Q ss_pred eEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 162 FVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 162 L~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
+-+..++..+|++++|+|+||||||||+++|++.
T Consensus 19 ~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 19 YFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3333466789999999999999999999999974
No 208
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.02 E-value=1.6e-06 Score=90.68 Aligned_cols=62 Identities=16% Similarity=0.184 Sum_probs=41.6
Q ss_pred HHHHHHhCCCChh---hhhcccCCCCHHHHHHHHHH----HHH-ccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q psy11936 272 ARRILAGLGFSRA---MQDRATKNFSGGWRMRVSLA----RAL-YIEPTLLLLDEPTNHLDLNAVIWLDNYLQG 337 (548)
Q Consensus 272 ~~~~L~~lgl~~~---~~~~~~~~LSGGqkqRvaLA----raL-~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~ 337 (548)
+.++|..+++... ....++..+|+|+++|+.++ +++ ..+|++ +|||++|..++..|.+.|.+
T Consensus 281 ~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 281 SFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQ 350 (364)
T ss_dssp HHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHH
Confidence 3456666655321 11234667899988888877 665 444454 89999999888888777754
No 209
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.02 E-value=1.4e-06 Score=90.93 Aligned_cols=71 Identities=11% Similarity=-0.097 Sum_probs=60.8
Q ss_pred cEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce--------eeeeee
Q psy11936 466 ILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV--------TFAYEG 531 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~--------~~~y~~ 531 (548)
.|+++||+++|++ +.+|+|+||+. .|+.+.|.||| |||+|+|.|.++|++|.|+. ++++ .|+|+.
T Consensus 3 ~l~~~~l~~~y~~-~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 81 (359)
T 2yyz_A 3 SIRVVNLKKYFGK-VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVF 81 (359)
T ss_dssp CEEEEEEEEEETT-EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred EEEEEEEEEEECC-EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEe
Confidence 5899999999964 67999999985 89999999996 99999999999999998764 3343 499999
Q ss_pred ccceee
Q psy11936 532 MKPLLV 537 (548)
Q Consensus 532 ~~~~~~ 537 (548)
|++.+.
T Consensus 82 Q~~~l~ 87 (359)
T 2yyz_A 82 QNYALY 87 (359)
T ss_dssp SSCCCC
T ss_pred cCcccC
Confidence 998664
No 210
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.01 E-value=2.6e-06 Score=86.56 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=28.2
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEE---eceee
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILY---CEQEV 212 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~---~~q~i 212 (548)
++..|++++|+|||||||||||++|+|. ..|..|.|.+ .+.++
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~--~~~~~G~i~~~~~~g~~~ 210 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPG--LKLRVSEVSEKLQRGRHT 210 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTT--CCCC-------------C
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccc--ccccccceecccCCCCCc
Confidence 4457999999999999999999999985 4577788877 55544
No 211
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.00 E-value=2.7e-06 Score=79.39 Aligned_cols=25 Identities=16% Similarity=0.404 Sum_probs=23.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
+|++++|+||||||||||+++|++.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999999984
No 212
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.00 E-value=2.5e-06 Score=94.62 Aligned_cols=75 Identities=13% Similarity=0.081 Sum_probs=63.9
Q ss_pred CCcEEEEeeEEEeCC-CCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce----------e
Q psy11936 464 PPILGLHNVTFAYEG-MKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV----------T 526 (548)
Q Consensus 464 ~~vL~l~~vs~~Y~~-~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~----------~ 526 (548)
...|+++||+|+|++ .+++|+|+||+. .|+++.|.||| |||+|+|+|.++|++|+|+. ++++ +
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 418 (587)
T 3qf4_A 339 EGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGH 418 (587)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHH
T ss_pred CCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhh
Confidence 346999999999963 468999999985 89999999995 89999999999999998754 4444 4
Q ss_pred eeeeeccceeee
Q psy11936 527 FAYEGMKPLLVD 538 (548)
Q Consensus 527 ~~y~~~~~~~~~ 538 (548)
|+|+.|+|.+.+
T Consensus 419 i~~v~Q~~~lf~ 430 (587)
T 3qf4_A 419 ISAVPQETVLFS 430 (587)
T ss_dssp EEEECSSCCCCS
T ss_pred eEEECCCCcCcC
Confidence 999999998864
No 213
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.00 E-value=1.6e-06 Score=90.55 Aligned_cols=71 Identities=13% Similarity=-0.039 Sum_probs=60.7
Q ss_pred cEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce--------eeeeee
Q psy11936 466 ILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV--------TFAYEG 531 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~--------~~~y~~ 531 (548)
.|+++||+++|++ +++++|+||+. .|+.+.|.||| |||+|+|.|.++|++|.|+. ++++ .|+|+.
T Consensus 3 ~l~~~~l~~~y~~-~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 81 (362)
T 2it1_A 3 EIKLENIVKKFGN-FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVF 81 (362)
T ss_dssp CEEEEEEEEESSS-SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred EEEEEeEEEEECC-EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEe
Confidence 5899999999964 67999999985 89999999996 89999999999999998764 3443 489999
Q ss_pred ccceee
Q psy11936 532 MKPLLV 537 (548)
Q Consensus 532 ~~~~~~ 537 (548)
|++.+.
T Consensus 82 Q~~~l~ 87 (362)
T 2it1_A 82 QNWALY 87 (362)
T ss_dssp TTCCCC
T ss_pred cCcccC
Confidence 998664
No 214
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.99 E-value=2e-06 Score=90.37 Aligned_cols=71 Identities=11% Similarity=-0.040 Sum_probs=61.0
Q ss_pred cEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccc--------eeeeeee
Q psy11936 466 ILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHN--------VTFAYEG 531 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n--------~~~~y~~ 531 (548)
.|+++||+++|++ ..+|+|+||+. .|+.+.|.||| |||+|+|.|.++|++|.|+. +.+ -.|+|+-
T Consensus 3 ~l~~~~l~~~yg~-~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~Vf 81 (381)
T 3rlf_A 3 SVQLQNVTKAWGE-VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVF 81 (381)
T ss_dssp CEEEEEEEEEETT-EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEEC
T ss_pred EEEEEeEEEEECC-EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEe
Confidence 5899999999965 67999999985 89999999996 89999999999999998764 232 2599999
Q ss_pred ccceee
Q psy11936 532 MKPLLV 537 (548)
Q Consensus 532 ~~~~~~ 537 (548)
|+|.|.
T Consensus 82 Q~~~l~ 87 (381)
T 3rlf_A 82 QSYALY 87 (381)
T ss_dssp TTCCCC
T ss_pred cCCcCC
Confidence 998765
No 215
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.99 E-value=1.6e-06 Score=90.94 Aligned_cols=71 Identities=11% Similarity=-0.012 Sum_probs=57.3
Q ss_pred cEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce--------eeeeee
Q psy11936 466 ILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV--------TFAYEG 531 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~--------~~~y~~ 531 (548)
.|+++||+++|++ +.+|+|+||+. .|+.+.|.||| |||+|+|.|.++|++|.|+. ++++ .|+|+.
T Consensus 11 ~l~~~~l~~~y~~-~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 89 (372)
T 1v43_A 11 EVKLENLTKRFGN-FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF 89 (372)
T ss_dssp CEEEEEEEEEETT-EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred eEEEEEEEEEECC-EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEe
Confidence 5999999999965 67999999985 89999999996 89999999999999998754 3333 599999
Q ss_pred ccceee
Q psy11936 532 MKPLLV 537 (548)
Q Consensus 532 ~~~~~~ 537 (548)
|++.+.
T Consensus 90 Q~~~l~ 95 (372)
T 1v43_A 90 QSYAVW 95 (372)
T ss_dssp C-----
T ss_pred cCcccC
Confidence 998764
No 216
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.98 E-value=2.2e-06 Score=95.14 Aligned_cols=72 Identities=21% Similarity=0.288 Sum_probs=61.9
Q ss_pred EEEEeeEEEeCCC--CcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce----------eee
Q psy11936 467 LGLHNVTFAYEGM--KPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV----------TFA 528 (548)
Q Consensus 467 L~l~~vs~~Y~~~--~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~----------~~~ 528 (548)
|+++||+|+|++. +++|+|+||+. .|+.+.|.||| |||+|+|+|.++|++|+|+. ++++ +|+
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 421 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIG 421 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEE
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceE
Confidence 9999999999752 47999999985 99999999995 99999999999999998764 4444 499
Q ss_pred eeeccceeee
Q psy11936 529 YEGMKPLLVD 538 (548)
Q Consensus 529 y~~~~~~~~~ 538 (548)
|+.|+|.+.+
T Consensus 422 ~v~Q~~~l~~ 431 (595)
T 2yl4_A 422 TVSQEPILFS 431 (595)
T ss_dssp EECSSCCCCS
T ss_pred EEccCCcccC
Confidence 9999998764
No 217
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.97 E-value=9.9e-07 Score=87.38 Aligned_cols=71 Identities=17% Similarity=0.108 Sum_probs=59.2
Q ss_pred cEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCC--CCCCCCCeee-ccce-----------e
Q psy11936 466 ILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPD--PPPLQPPILG-LHNV-----------T 526 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~--~~~~~~~~~~-~~n~-----------~ 526 (548)
+|+++||+++|++ +++|+|+||+. .|+.+.|.||| |||+|+|+|. ++|++|+|+. ++++ .
T Consensus 3 ~l~~~~l~~~y~~-~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (250)
T 2d2e_A 3 QLEIRDLWASIDG-ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKG 81 (250)
T ss_dssp EEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred eEEEEeEEEEECC-EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence 6899999999965 68999999986 99999999996 8999999998 7899998754 3332 3
Q ss_pred eeeeeccceee
Q psy11936 527 FAYEGMKPLLV 537 (548)
Q Consensus 527 ~~y~~~~~~~~ 537 (548)
++|+.|+|.+.
T Consensus 82 i~~v~q~~~~~ 92 (250)
T 2d2e_A 82 LFLAFQYPVEV 92 (250)
T ss_dssp BCCCCCCCC-C
T ss_pred EEEeccCCccc
Confidence 78999998764
No 218
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.97 E-value=6.8e-06 Score=85.29 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=28.3
Q ss_pred ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCC
Q psy11936 159 NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDL 197 (548)
Q Consensus 159 ~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~ 197 (548)
..+|++++++++ .++|||++||||||||+.|+|..+
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~ 59 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDF 59 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCC
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCc
Confidence 357899999997 999999999999999999999644
No 219
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.97 E-value=2.8e-05 Score=75.54 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=31.2
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC-----CeEEEEec
Q psy11936 308 YIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK-----KTLLIVSH 347 (548)
Q Consensus 308 ~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~-----~TvIiVSH 347 (548)
..+|+++|+..+.++++.....++..++..++ .++|++||
T Consensus 110 ~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 110 SPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 35789999999999999887777777665432 48888888
No 220
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.96 E-value=3.1e-06 Score=86.90 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=30.9
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHhh---cCCeEEEEecCHHHHHhh
Q psy11936 310 EPTLLLLDEPTNHLD---LNAVIWLDNYLQG---WKKTLLIVSHDQSFLDNV 355 (548)
Q Consensus 310 ~P~lLLLDEPTn~LD---~~s~~~L~~~L~~---~~~TvIiVSHD~~~l~~v 355 (548)
.|.+|++||+.+.++ ......|.+.+.. .+.++|++||+..+...+
T Consensus 128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~ 179 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLL 179 (386)
T ss_dssp SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGC
T ss_pred CeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhh
Confidence 388999999987663 3445555565632 356899999988654443
No 221
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.93 E-value=2.5e-05 Score=83.43 Aligned_cols=40 Identities=25% Similarity=0.133 Sum_probs=30.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV 212 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i 212 (548)
++.+++|+|+|||||||++..|++.. .+...++.+.+.++
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l--~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY--KKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH--HHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEecCc
Confidence 57899999999999999999998632 23445666655543
No 222
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.92 E-value=2.1e-06 Score=84.66 Aligned_cols=68 Identities=6% Similarity=-0.056 Sum_probs=56.9
Q ss_pred cEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce--------eeeeee
Q psy11936 466 ILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV--------TFAYEG 531 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~--------~~~y~~ 531 (548)
+|+++||+++|++ +|+|+||.. . +.+.|.||| |||+|+|+|.++|++|+|+. ++++ .|+|+.
T Consensus 1 ml~~~~l~~~y~~---~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~ 76 (240)
T 2onk_A 1 MFLKVRAEKRLGN---FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVP 76 (240)
T ss_dssp CCEEEEEEEEETT---EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCC
T ss_pred CEEEEEEEEEeCC---EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEc
Confidence 3789999999954 599999985 6 899999996 89999999999999998754 3443 489999
Q ss_pred ccceee
Q psy11936 532 MKPLLV 537 (548)
Q Consensus 532 ~~~~~~ 537 (548)
|+|.+.
T Consensus 77 q~~~l~ 82 (240)
T 2onk_A 77 QDYALF 82 (240)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 998664
No 223
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.92 E-value=3e-06 Score=88.31 Aligned_cols=71 Identities=13% Similarity=-0.065 Sum_probs=60.1
Q ss_pred cEEEEeeEEEeCCCCc--ccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce------------
Q psy11936 466 ILGLHNVTFAYEGMKP--LLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV------------ 525 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~--ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~------------ 525 (548)
.|+++||+++|++ +. +|+|+||+. .|+.+.|.||| |||+|+|.|.++|++|.|+. ++++
T Consensus 3 ~l~i~~l~~~y~~-~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~ 81 (353)
T 1oxx_K 3 RIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (353)
T ss_dssp CEEEEEEEEEEGG-GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEECC-EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhh
Confidence 5899999999965 56 999999985 89999999996 99999999999999998754 2332
Q ss_pred -eeeeeeccceee
Q psy11936 526 -TFAYEGMKPLLV 537 (548)
Q Consensus 526 -~~~y~~~~~~~~ 537 (548)
.|+|+.|++.+.
T Consensus 82 r~ig~v~Q~~~l~ 94 (353)
T 1oxx_K 82 RKIGMVFQTWALY 94 (353)
T ss_dssp SCEEEEETTSCCC
T ss_pred CCEEEEeCCCccC
Confidence 489999998664
No 224
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.91 E-value=1.3e-06 Score=88.63 Aligned_cols=70 Identities=10% Similarity=0.109 Sum_probs=50.6
Q ss_pred CCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeeeeeccceeee
Q psy11936 464 PPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAYEGMKPLLVD 538 (548)
Q Consensus 464 ~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y~~~~~~~~~ 538 (548)
.+.|+++||+|+| +++|+++||.. .|+.+.|.||| |||+|+|+|.++|++|.|+... +|+|+.|+|.+.+
T Consensus 38 ~~~l~~~~l~~~~---~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~l~~ 112 (290)
T 2bbs_A 38 DDSLSFSNFSLLG---TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQNSWIMP 112 (290)
T ss_dssp ------------C---CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS--CEEEECSSCCCCS
T ss_pred CceEEEEEEEEcC---ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC--EEEEEeCCCccCc
Confidence 3479999999964 57999999985 89999999996 8999999999999999988754 6999999987653
No 225
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.91 E-value=2.2e-07 Score=91.34 Aligned_cols=46 Identities=33% Similarity=0.422 Sum_probs=40.2
Q ss_pred EEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 148 KVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 148 ~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++++++.|++..+|++++|++.+| ++|+||||||||||+++|++.
T Consensus 27 ~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 27 ELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp HHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHH
Confidence 3556666777777899999999999 999999999999999999984
No 226
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.90 E-value=3.4e-06 Score=87.69 Aligned_cols=70 Identities=14% Similarity=0.072 Sum_probs=59.7
Q ss_pred cEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce--------eeeeee
Q psy11936 466 ILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV--------TFAYEG 531 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~--------~~~y~~ 531 (548)
+|+++||+++|++ + +++|+||+. .|+.+.|.||| |||+|+|.|.++|++|.|+. ++++ .|+|+.
T Consensus 1 ml~~~~l~~~y~~-~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 78 (348)
T 3d31_A 1 MIEIESLSRKWKN-F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVY 78 (348)
T ss_dssp CEEEEEEEEECSS-C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEEC
T ss_pred CEEEEEEEEEECC-E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEe
Confidence 3789999999965 5 999999985 89999999996 99999999999999998764 3343 489999
Q ss_pred ccceee
Q psy11936 532 MKPLLV 537 (548)
Q Consensus 532 ~~~~~~ 537 (548)
|++.+.
T Consensus 79 Q~~~l~ 84 (348)
T 3d31_A 79 QNYSLF 84 (348)
T ss_dssp TTCCCC
T ss_pred cCcccC
Confidence 998664
No 227
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.90 E-value=8.6e-06 Score=83.24 Aligned_cols=130 Identities=9% Similarity=-0.031 Sum_probs=76.9
Q ss_pred eeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHHH
Q psy11936 161 LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKL 240 (548)
Q Consensus 161 iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (548)
-|+.+.--+.+|+.+.|.|++|+|||||+..|+.... .. ...+.|+.-+.. ...+
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a-~~-g~~vl~~slE~s---~~~l-------------------- 111 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS-DN-DDVVNLHSLEMG---KKEN-------------------- 111 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH-TT-TCEEEEEESSSC---HHHH--------------------
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-Hc-CCeEEEEECCCC---HHHH--------------------
Confidence 4555555689999999999999999999988874211 11 134555443211 0000
Q ss_pred hhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCC
Q psy11936 241 EAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPT 320 (548)
Q Consensus 241 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPT 320 (548)
. .++.... .|++.......-..||+++.+|+..|...+.++++++.|+|+
T Consensus 112 ----------------~------------~R~~~~~--~~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~ 161 (315)
T 3bh0_A 112 ----------------I------------KRLIVTA--GSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAG 161 (315)
T ss_dssp ----------------H------------HHHHHHH--TTCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSC
T ss_pred ----------------H------------HHHHHHH--cCCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCC
Confidence 0 0000111 122211111111238999999999999999999999999986
Q ss_pred CCCCHHHHHH-HHHHHhhcCCe--EEEEec
Q psy11936 321 NHLDLNAVIW-LDNYLQGWKKT--LLIVSH 347 (548)
Q Consensus 321 n~LD~~s~~~-L~~~L~~~~~T--vIiVSH 347 (548)
+++..... +..+....+.. +|||-|
T Consensus 162 --~~~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 162 --QSVNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp --CBHHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred --CCHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 44444333 33344445556 887766
No 228
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.88 E-value=3.5e-06 Score=88.34 Aligned_cols=71 Identities=14% Similarity=-0.015 Sum_probs=60.0
Q ss_pred cEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeec-cce--------------
Q psy11936 466 ILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGL-HNV-------------- 525 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~-~n~-------------- 525 (548)
.|+++||+++|++ +.+|+|+||.. .|+.+.|.||| |||+|+|.|.++|++|.|+.. +++
T Consensus 3 ~l~~~~l~~~y~~-~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r 81 (372)
T 1g29_1 3 GVRLVDVWKVFGE-VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81 (372)
T ss_dssp EEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred EEEEEeEEEEECC-EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHC
Confidence 5899999999964 67999999986 89999999996 999999999999999987542 222
Q ss_pred eeeeeeccceee
Q psy11936 526 TFAYEGMKPLLV 537 (548)
Q Consensus 526 ~~~y~~~~~~~~ 537 (548)
.|+|+.|++.+.
T Consensus 82 ~ig~v~Q~~~l~ 93 (372)
T 1g29_1 82 DIAMVFQSYALY 93 (372)
T ss_dssp SEEEECSCCCCC
T ss_pred CEEEEeCCCccC
Confidence 489999998664
No 229
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.88 E-value=2.9e-07 Score=91.98 Aligned_cols=57 Identities=28% Similarity=0.280 Sum_probs=45.1
Q ss_pred EEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEece
Q psy11936 148 KVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQ 210 (548)
Q Consensus 148 ~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q 210 (548)
+++++.+.|+...+|++++|++.+| ++|+||||||||||+++|++.. ..+.+.+.+.
T Consensus 51 ~l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~----~~~~i~~~~~ 107 (278)
T 1iy2_A 51 ELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA----RVPFITASGS 107 (278)
T ss_dssp HHHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHT----TCCEEEEEHH
T ss_pred HHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHc----CCCEEEecHH
Confidence 3556777777778899999999999 9999999999999999999852 2445555443
No 230
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.86 E-value=1.9e-05 Score=84.14 Aligned_cols=56 Identities=21% Similarity=0.154 Sum_probs=43.3
Q ss_pred eEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee
Q psy11936 151 NFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV 212 (548)
Q Consensus 151 nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i 212 (548)
+|++.|++.. .+++|+ +|.+++|+|+|||||||++..|++.. .+..+++.+.+.++
T Consensus 81 ~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l--~~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 81 ALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYY--KGKGRRPLLVAADT 136 (425)
T ss_dssp HHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEEECCS
T ss_pred HHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEeeccc
Confidence 5666676544 678887 89999999999999999999999742 34466777766554
No 231
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.86 E-value=5.6e-06 Score=81.75 Aligned_cols=31 Identities=29% Similarity=0.273 Sum_probs=24.1
Q ss_pred eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHH
Q psy11936 160 DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA 193 (548)
Q Consensus 160 ~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLa 193 (548)
.++.+.+ .+|++++|+||||||||||+++|+
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHH
Confidence 3444443 689999999999999999999999
No 232
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.85 E-value=1.3e-06 Score=89.24 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=25.7
Q ss_pred EEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEE
Q psy11936 167 LLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILY 207 (548)
Q Consensus 167 l~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~ 207 (548)
+++.+|++++|+|+||||||||+++|+|. ..+..|.|.+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~--~~~~~G~I~~ 206 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPE--LGLRTNEISE 206 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccc--ccccccceee
Confidence 45568999999999999999999999985 3455666655
No 233
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.83 E-value=4.9e-06 Score=80.84 Aligned_cols=40 Identities=25% Similarity=0.171 Sum_probs=31.8
Q ss_pred eEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEecee
Q psy11936 166 NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQE 211 (548)
Q Consensus 166 sl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~ 211 (548)
+.+..+|++++|+|+||||||||+++|+|. .|.|.+.+.+
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~ 53 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEP 53 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCT
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecC
Confidence 345578999999999999999999999974 3456665543
No 234
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.83 E-value=2.3e-06 Score=89.85 Aligned_cols=36 Identities=28% Similarity=0.310 Sum_probs=34.0
Q ss_pred eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 160 DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 160 ~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
.+|+++|+.+.+|++++|+||||||||||+++|+|.
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 578999999999999999999999999999999973
No 235
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.83 E-value=0.00014 Score=72.59 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCH----------HHHHHHHHHHhhcC-------CeEEEEecCHH
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDL----------NAVIWLDNYLQGWK-------KTLLIVSHDQS 350 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~----------~s~~~L~~~L~~~~-------~TvIiVSHD~~ 350 (548)
++++..|..++.+....|.+|++||+.+-++. .....|...+.... ..||.+|++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 46778888888888899999999999877653 22334445554432 35677888654
No 236
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.77 E-value=1.1e-05 Score=77.15 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=24.4
Q ss_pred ECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 170 ANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 170 ~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
.+|++++|+||||||||||+++|++.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 57999999999999999999999985
No 237
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.74 E-value=1e-05 Score=86.50 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=30.8
Q ss_pred cCCCEEEEeCCCCCCCH-HHHHHHHHHHhh---cCCeEEEEecCH
Q psy11936 309 IEPTLLLLDEPTNHLDL-NAVIWLDNYLQG---WKKTLLIVSHDQ 349 (548)
Q Consensus 309 ~~P~lLLLDEPTn~LD~-~s~~~L~~~L~~---~~~TvIiVSHD~ 349 (548)
.+|++||+||+..-.+. .+...|...+.. .+..||++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 48999999999887764 556666666543 357899999973
No 238
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.73 E-value=0.00023 Score=74.09 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=24.0
Q ss_pred EECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 169 IANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 169 I~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
|.+|.++.|.|++|+|||||...++.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999999988774
No 239
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.73 E-value=6.7e-06 Score=81.45 Aligned_cols=66 Identities=14% Similarity=0.005 Sum_probs=56.1
Q ss_pred cEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce----------eeee
Q psy11936 466 ILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV----------TFAY 529 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~----------~~~y 529 (548)
+|+++||+++ ++|+|+||.. .|+.+.|.||| |||+|+|+|.++|+ |.|+. ++++ .++|
T Consensus 4 ~l~~~~l~~~-----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~ 77 (249)
T 2qi9_C 4 VMQLQDVAES-----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAY 77 (249)
T ss_dssp EEEEEEEEET-----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEE
T ss_pred EEEEEceEEE-----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEE
Confidence 6899999986 5999999985 99999999996 89999999999999 98754 4443 4899
Q ss_pred eeccceee
Q psy11936 530 EGMKPLLV 537 (548)
Q Consensus 530 ~~~~~~~~ 537 (548)
+.|+|.+.
T Consensus 78 v~q~~~~~ 85 (249)
T 2qi9_C 78 LSQQQTPP 85 (249)
T ss_dssp ECSCCCCC
T ss_pred ECCCCccC
Confidence 99998654
No 240
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.72 E-value=8e-06 Score=91.91 Aligned_cols=46 Identities=4% Similarity=-0.039 Sum_probs=35.6
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSF 351 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~ 351 (548)
..+-..+.-+|++| ||++++..+..++.. +...+.++|+|.|.++.
T Consensus 93 ~~l~~ad~~ilVvD-~~~g~~~qt~~~~~~-~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 93 GALEAADAALVAVS-AEAGVQVGTERAWTV-AERLGLPRMVVVTKLDK 138 (665)
T ss_dssp HHHHHCSEEEEEEE-TTTCSCHHHHHHHHH-HHHTTCCEEEEEECGGG
T ss_pred HHHhhcCcEEEEEc-CCcccchhHHHHHHH-HHHccCCEEEEecCCch
Confidence 33446788899999 999999988866544 44567889999998875
No 241
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.71 E-value=1.6e-05 Score=73.23 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=23.7
Q ss_pred ECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 170 ANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 170 ~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
.+|++++|+|+||||||||+++|++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 36899999999999999999999973
No 242
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.69 E-value=1.5e-05 Score=73.02 Aligned_cols=25 Identities=44% Similarity=0.655 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
.|.+++|+|+||||||||+++|++.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999999999974
No 243
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.68 E-value=2.2e-05 Score=71.40 Aligned_cols=29 Identities=31% Similarity=0.512 Sum_probs=23.8
Q ss_pred eeeEEEECCcEEEEECCCCCcHHHHHHHHH
Q psy11936 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIA 193 (548)
Q Consensus 164 ~vsl~I~~Ge~igLvGpNGsGKSTLLklLa 193 (548)
+.++.+.+| +.+|+|||||||||||.+|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 345555554 99999999999999999986
No 244
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.63 E-value=4.9e-05 Score=87.29 Aligned_cols=30 Identities=33% Similarity=0.475 Sum_probs=27.3
Q ss_pred eEEEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 166 NLLIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 166 sl~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
+|.+.+|+.++|+||||||||||+++|++.
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 346889999999999999999999999985
No 245
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.61 E-value=2.4e-05 Score=74.91 Aligned_cols=30 Identities=23% Similarity=0.475 Sum_probs=24.8
Q ss_pred eEEEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 166 NLLIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 166 sl~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
|+...+|.+++|+||||||||||++.|++.
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 344458999999999999999999999974
No 246
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.59 E-value=7.2e-06 Score=86.02 Aligned_cols=49 Identities=31% Similarity=0.326 Sum_probs=44.4
Q ss_pred cEEEEeEEEEeCC-ceeeE--------------eeeEEEECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 146 DIKVENFSISAKG-NDLFV--------------NANLLIANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 146 ~I~l~nls~~y~~-~~iL~--------------~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.+.++||++.|.. +..|+ |+++.|.+|++++|+|++|||||||++.|++
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHH
Confidence 4778899999965 56788 8999999999999999999999999999986
No 247
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.58 E-value=1.6e-05 Score=83.75 Aligned_cols=74 Identities=11% Similarity=-0.009 Sum_probs=61.0
Q ss_pred CCcEEEEeeEEEeC-CCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce----------e
Q psy11936 464 PPILGLHNVTFAYE-GMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV----------T 526 (548)
Q Consensus 464 ~~vL~l~~vs~~Y~-~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~----------~ 526 (548)
...|+++||+++|+ ++.++|+|+||+. .|+.+.|.||| |||+|+|.|.++ ++|.|+. ++++ .
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ 95 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKA 95 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHT
T ss_pred CCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCC
Confidence 35699999999995 3468999999985 89999999995 899999999988 7887654 3332 4
Q ss_pred eeeeeccceeee
Q psy11936 527 FAYEGMKPLLVD 538 (548)
Q Consensus 527 ~~y~~~~~~~~~ 538 (548)
|+|+.|+|.+..
T Consensus 96 ig~v~Q~~~lf~ 107 (390)
T 3gd7_A 96 FGVIPQKVFIFS 107 (390)
T ss_dssp EEEESCCCCCCS
T ss_pred EEEEcCCcccCc
Confidence 899999998763
No 248
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.57 E-value=1e-05 Score=83.10 Aligned_cols=49 Identities=24% Similarity=0.251 Sum_probs=39.8
Q ss_pred eEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee
Q psy11936 162 FVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV 212 (548)
Q Consensus 162 L~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i 212 (548)
+.+++|++.+|++++|+|+||+||||++..|++.. .+..++|.+.+.++
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l--~~~g~kVllid~D~ 143 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYY--AELGYKVLIAAADT 143 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHH--HHTTCCEEEEECCC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCC
Confidence 46788989999999999999999999999999742 34567787776654
No 249
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.52 E-value=0.00026 Score=71.96 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=24.6
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
-|.+|+++.|.|++|||||||+..|+.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999988874
No 250
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.50 E-value=4.1e-05 Score=72.64 Aligned_cols=42 Identities=21% Similarity=0.221 Sum_probs=31.7
Q ss_pred EECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee
Q psy11936 169 IANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV 212 (548)
Q Consensus 169 I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i 212 (548)
..+|.++||+|+||||||||+++|++.. .+..+.+.+.+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~--~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTL--REQGISVCVFHMDD 60 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEEGGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHH--hhcCCeEEEeccCc
Confidence 5678999999999999999999999742 23345566555443
No 251
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.50 E-value=0.00011 Score=73.66 Aligned_cols=35 Identities=20% Similarity=0.239 Sum_probs=26.1
Q ss_pred HHHHHccCC-CEEEEeCCCCCCCHHHHHHHHHHHhhc
Q psy11936 303 LARALYIEP-TLLLLDEPTNHLDLNAVIWLDNYLQGW 338 (548)
Q Consensus 303 LAraL~~~P-~lLLLDEPTn~LD~~s~~~L~~~L~~~ 338 (548)
+..++...| .+|+|||. ..|++.....|..+|...
T Consensus 111 ~~~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~le~~ 146 (311)
T 4fcw_A 111 LTEAVRRRPYSVILFDAI-EKAHPDVFNILLQMLDDG 146 (311)
T ss_dssp HHHHHHHCSSEEEEEETG-GGSCHHHHHHHHHHHHHS
T ss_pred HHHHHHhCCCeEEEEeCh-hhcCHHHHHHHHHHHhcC
Confidence 334444334 79999997 678999999999998753
No 252
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.49 E-value=1.6e-06 Score=89.67 Aligned_cols=62 Identities=18% Similarity=0.217 Sum_probs=46.6
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEece
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQ 210 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q 210 (548)
++.+++++.|+...+++++++.+..|.+++|+|+||+|||||++.|++.. .+..+.+.+.+.
T Consensus 31 ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~--~~~~~~v~v~~~ 92 (341)
T 2p67_A 31 VESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL--IREGLKVAVIAV 92 (341)
T ss_dssp HHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH--HHTTCCEEEEEE
T ss_pred hhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHH--HhcCCeEEEEee
Confidence 44455666676677889999999999999999999999999999998742 223344554443
No 253
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.46 E-value=3.6e-05 Score=72.99 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=25.7
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
++.+|.+++|+|++|||||||+++|++.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 5678999999999999999999999974
No 254
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.43 E-value=0.00023 Score=71.88 Aligned_cols=29 Identities=31% Similarity=0.453 Sum_probs=25.5
Q ss_pred EEEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 167 LLIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 167 l~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
+.+.++..+.|.||+|+|||||+++|++.
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 34567889999999999999999999974
No 255
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.36 E-value=0.0001 Score=70.40 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=23.9
Q ss_pred eeeEEEECCcEEEEECCCCCcHHHHHHHHH
Q psy11936 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIA 193 (548)
Q Consensus 164 ~vsl~I~~Ge~igLvGpNGsGKSTLLklLa 193 (548)
+.++.+.+ .+.+|+|||||||||||.+|.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 44555655 499999999999999999986
No 256
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.36 E-value=8.8e-05 Score=70.92 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=22.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
+.+++|+|+|||||||++++|++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999973
No 257
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.28 E-value=0.0001 Score=71.73 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=25.0
Q ss_pred eeEeeeEEEE---CCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 161 LFVNANLLIA---NGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 161 iL~~vsl~I~---~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
-|.++||++. .|.+++|.|++||||||+++.|+..
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3566666666 8999999999999999999999864
No 258
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.27 E-value=0.00013 Score=67.45 Aligned_cols=26 Identities=31% Similarity=0.346 Sum_probs=23.3
Q ss_pred ECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 170 ANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 170 ~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
.+|.+++|+|++||||||++++|++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999999863
No 259
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.27 E-value=5.6e-05 Score=82.36 Aligned_cols=33 Identities=18% Similarity=0.387 Sum_probs=30.5
Q ss_pred eeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 161 LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 161 iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.+++++|.+.+| +.+|+|+|||||||||.+|..
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~ 82 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGL 82 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHH
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 678899999999 999999999999999999964
No 260
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.26 E-value=0.00012 Score=69.04 Aligned_cols=21 Identities=38% Similarity=0.604 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+++|+|+|||||||++++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999997
No 261
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.25 E-value=0.00056 Score=69.29 Aligned_cols=58 Identities=21% Similarity=0.092 Sum_probs=42.0
Q ss_pred EeEEEEeCCceeeEe-eeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee
Q psy11936 150 ENFSISAKGNDLFVN-ANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV 212 (548)
Q Consensus 150 ~nls~~y~~~~iL~~-vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i 212 (548)
++++..|++.. .+ ++|++. |.+++|+|+||+||||++..|++.. .+..+++.+.+.+.
T Consensus 78 ~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~--~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 78 DELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFY--KKKGFKVGLVGADV 136 (297)
T ss_dssp HHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHH--HHTTCCEEEEECCC
T ss_pred HHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEecCC
Confidence 34555666543 46 788765 9999999999999999999999742 23455677666554
No 262
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.20 E-value=0.00014 Score=67.91 Aligned_cols=31 Identities=26% Similarity=0.388 Sum_probs=25.8
Q ss_pred eeeEEEECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 164 ~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
++||+...|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 5788888999999999999999999999985
No 263
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.20 E-value=0.00026 Score=73.70 Aligned_cols=43 Identities=21% Similarity=0.482 Sum_probs=31.9
Q ss_pred EEEEeEEEE-eCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHH
Q psy11936 147 IKVENFSIS-AKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA 193 (548)
Q Consensus 147 I~l~nls~~-y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLa 193 (548)
+.+..|+.. |. .+.++.+++.+| +.+|+|+|||||||||.+|+
T Consensus 3 M~l~~L~l~nFr---~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 3 MILKEIRMNNFK---SHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEEEEEET---TEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cEEeEEEEEccc---cccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 344555443 33 356777887665 99999999999999999885
No 264
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.20 E-value=0.0034 Score=65.49 Aligned_cols=27 Identities=41% Similarity=0.519 Sum_probs=23.9
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
-|.+|+++.|.|+.|+|||||+..|+.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 368999999999999999999987763
No 265
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.19 E-value=7.5e-05 Score=82.11 Aligned_cols=28 Identities=36% Similarity=0.437 Sum_probs=26.0
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
.+.+|++++|+|+||||||||+++|+|.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHh
Confidence 4679999999999999999999999985
No 266
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.17 E-value=0.00084 Score=65.77 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
+++|||.+|+|||||++.|+|..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999999853
No 267
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.11 E-value=0.00021 Score=65.51 Aligned_cols=27 Identities=30% Similarity=0.570 Sum_probs=23.1
Q ss_pred ECCcEEEEECCCCCcHHHHHHHHHcCC
Q psy11936 170 ANGRRYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 170 ~~Ge~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.+|.+++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999999853
No 268
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.09 E-value=0.001 Score=70.88 Aligned_cols=129 Identities=13% Similarity=0.063 Sum_probs=75.6
Q ss_pred eeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHHH
Q psy11936 161 LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKL 240 (548)
Q Consensus 161 iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (548)
-|+.+.--+.+|+.+.|.|++|+|||||+..|+.... ......+.|+.-+.. ...+
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a-~~~g~~vl~~slE~~---~~~l-------------------- 244 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA-LKEGVGVGIYSLEMP---AAQL-------------------- 244 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH-HTTCCCEEEEESSSC---HHHH--------------------
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH-HhCCCeEEEEECCCC---HHHH--------------------
Confidence 4555554589999999999999999999988874211 111223444432210 0000
Q ss_pred hhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCC
Q psy11936 241 EAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPT 320 (548)
Q Consensus 241 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPT 320 (548)
.. ++ +....|++.... .-..||..+.+|+.-|...+...++++.|.|.
T Consensus 245 ----------------~~------------R~--~~~~~~i~~~~l--~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~ 292 (444)
T 2q6t_A 245 ----------------TL------------RM--MCSEARIDMNRV--RLGQLTDRDFSRLVDVASRLSEAPIYIDDTPD 292 (444)
T ss_dssp ----------------HH------------HH--HHHHTTCCTTTC--CGGGCCHHHHHHHHHHHHHHHTSCEEEECCTT
T ss_pred ----------------HH------------HH--HHHHcCCCHHHH--hCCCCCHHHHHHHHHHHHHHhcCCEEEECCCC
Confidence 00 00 011123331111 12469999999999888888888899999764
Q ss_pred CCCCHHHHH-HHHHHHhhcCCeEEEEec
Q psy11936 321 NHLDLNAVI-WLDNYLQGWKKTLLIVSH 347 (548)
Q Consensus 321 n~LD~~s~~-~L~~~L~~~~~TvIiVSH 347 (548)
+++.... .+..+....+..+|||-+
T Consensus 293 --~s~~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 293 --LTLMEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp --CBHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 4444433 344444455666777644
No 269
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.08 E-value=3.3e-05 Score=80.51 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=37.0
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCC
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.+.+.||+..|+.+.++++++|.| +|||+||+|||||++.|.|..
T Consensus 17 ~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 17 YVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp ----CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred eEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 477888988898888999999987 999999999999999998753
No 270
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.07 E-value=0.00025 Score=67.16 Aligned_cols=28 Identities=32% Similarity=0.489 Sum_probs=24.5
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
...+|.+++|+||+|||||||.+.|+..
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999999863
No 271
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.02 E-value=2e-05 Score=86.60 Aligned_cols=46 Identities=26% Similarity=0.291 Sum_probs=38.5
Q ss_pred EEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 149 VENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 149 l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
++++...|+...++.++++++ +|..++|+||||||||||+++|++.
T Consensus 86 ~~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 86 LEKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp CHHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 445666666666788888888 8999999999999999999999974
No 272
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.02 E-value=0.00027 Score=71.65 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
+..+.|.||+|+|||||++.|++.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457889999999999999999863
No 273
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.99 E-value=0.0002 Score=74.22 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=28.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEecee
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQE 211 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~ 211 (548)
.+.+++|+|++||||||||+.|+|.. .+..+++.+.+.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~--~~~~~~v~V~~~d 111 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML--TERGHKLSVLAVD 111 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH--HHTTCCEEEEECC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh--hhcCCeEEEEeec
Confidence 56789999999999999999999742 2334555555443
No 274
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.97 E-value=0.00034 Score=65.10 Aligned_cols=35 Identities=29% Similarity=0.476 Sum_probs=21.3
Q ss_pred eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 160 DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 160 ~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++++++|..... .++|+|++|+|||||++.+++.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 3678899988776 8899999999999999999974
No 275
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.95 E-value=0.00041 Score=62.85 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|+|++|+|||||++.|+|.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 276
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.94 E-value=6.7e-05 Score=70.52 Aligned_cols=42 Identities=24% Similarity=0.349 Sum_probs=31.3
Q ss_pred EEEeCC-ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 153 SISAKG-NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 153 s~~y~~-~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|++ ..+++++||....+ .++|+|++|+|||||++.+++.
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp -------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 445655 36888999888776 6899999999999999999864
No 277
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.91 E-value=0.0014 Score=64.68 Aligned_cols=27 Identities=37% Similarity=0.540 Sum_probs=23.2
Q ss_pred EECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 169 IANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 169 I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
+..+.-+.|.||.|+|||||++.|+..
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 345667999999999999999999863
No 278
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.91 E-value=0.00013 Score=79.27 Aligned_cols=58 Identities=28% Similarity=0.284 Sum_probs=43.4
Q ss_pred EEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee
Q psy11936 149 VENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV 212 (548)
Q Consensus 149 l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i 212 (548)
++++...|.+..+|.++++.+..| +.|+||||+|||||+++|++.. ..+.+.+.+.++
T Consensus 43 l~~lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~----~~~~i~i~g~~~ 100 (499)
T 2dhr_A 43 LKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA----RVPFITASGSDF 100 (499)
T ss_dssp HHHHHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHT----TCCEEEEEGGGG
T ss_pred HHHHHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHh----CCCEEEEehhHH
Confidence 445555566667899999999999 9999999999999999999842 234455554443
No 279
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.90 E-value=8.3e-05 Score=76.18 Aligned_cols=44 Identities=20% Similarity=0.375 Sum_probs=37.4
Q ss_pred EEEEeCCceeeEeeeEEEECCcE--EEEECCCCCcHHHHHHHHHcC
Q psy11936 152 FSISAKGNDLFVNANLLIANGRR--YGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 152 ls~~y~~~~iL~~vsl~I~~Ge~--igLvGpNGsGKSTLLklLaG~ 195 (548)
++..||...+++.++..|..|++ +.|.||+|+|||||+++|++.
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 33345666788888888999988 999999999999999999974
No 280
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.87 E-value=0.00034 Score=71.17 Aligned_cols=40 Identities=13% Similarity=0.282 Sum_probs=32.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CeEEEEecCHH
Q psy11936 310 EPTLLLLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIVSHDQS 350 (548)
Q Consensus 310 ~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~--~TvIiVSHD~~ 350 (548)
++.||++|| ...|+......|.+++.+.. ..+|++|++..
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchh
Confidence 667999999 88999999999999998763 35677776654
No 281
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.86 E-value=0.0034 Score=64.27 Aligned_cols=56 Identities=14% Similarity=0.205 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHH--c--cCCCEEEEeCCCCCCC-------H--------HH-------HHHHHHHHhhcCCeEEEEecC
Q psy11936 295 GGWRMRVSLARAL--Y--IEPTLLLLDEPTNHLD-------L--------NA-------VIWLDNYLQGWKKTLLIVSHD 348 (548)
Q Consensus 295 GGqkqRvaLAraL--~--~~P~lLLLDEPTn~LD-------~--------~s-------~~~L~~~L~~~~~TvIiVSHD 348 (548)
-++++.+.++.+| + ..|+++++|=-++..- + .. ...|..+++.++.++|+|-|=
T Consensus 92 ~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV 171 (333)
T 3io5_A 92 SLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT 171 (333)
T ss_dssp BHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCe
Confidence 3566656676666 3 3699999998877751 0 01 112334556778999999998
Q ss_pred HH
Q psy11936 349 QS 350 (548)
Q Consensus 349 ~~ 350 (548)
+.
T Consensus 172 ~k 173 (333)
T 3io5_A 172 YE 173 (333)
T ss_dssp --
T ss_pred ee
Confidence 66
No 282
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.86 E-value=0.00048 Score=63.60 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=22.2
Q ss_pred ECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 170 ANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 170 ~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
..|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999984
No 283
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.86 E-value=0.00028 Score=71.40 Aligned_cols=61 Identities=16% Similarity=0.086 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHHHc--cCCCEEEEeCCCCCCCHHH-HHHHHHHHh----hcCC--eEEEEecCHHHHHhhcCEEE
Q psy11936 293 FSGGWRMRVSLARALY--IEPTLLLLDEPTNHLDLNA-VIWLDNYLQ----GWKK--TLLIVSHDQSFLDNVCNEII 360 (548)
Q Consensus 293 LSGGqkqRvaLAraL~--~~P~lLLLDEPTn~LD~~s-~~~L~~~L~----~~~~--TvIiVSHD~~~l~~vadrIi 360 (548)
+|+|++ .+++++. ..|.+|++ |.+|... ...+.+.+. .++. .+.+++|+..-+..+++.|.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 899886 5566666 78999999 8999754 343433333 2343 55566677666666666554
No 284
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.85 E-value=0.00042 Score=65.22 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
..+++|+|++|||||||.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999863
No 285
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.84 E-value=0.0016 Score=66.62 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=22.0
Q ss_pred ECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 170 ANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 170 ~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
..+..+.|.||.|+|||||++.++.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHH
Confidence 3566899999999999999999985
No 286
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.79 E-value=0.00062 Score=65.97 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=23.3
Q ss_pred ECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 170 ANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 170 ~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.+|.+++|+|++||||||+.++|++
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999999999996
No 287
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.79 E-value=0.00066 Score=62.95 Aligned_cols=27 Identities=37% Similarity=0.445 Sum_probs=24.0
Q ss_pred EECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 169 IANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 169 I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
..+|.+++|+|++||||||+++.|+..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 347899999999999999999999863
No 288
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.77 E-value=0.00069 Score=62.13 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999974
No 289
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.75 E-value=0.00015 Score=75.37 Aligned_cols=36 Identities=28% Similarity=0.380 Sum_probs=31.6
Q ss_pred eeeEeeeEEEECCcE--EEEECCCCCcHHHHHHHHHcC
Q psy11936 160 DLFVNANLLIANGRR--YGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 160 ~iL~~vsl~I~~Ge~--igLvGpNGsGKSTLLklLaG~ 195 (548)
.+++.+++.+.+|++ ++|+|++|||||||.++|++.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 356778888889998 999999999999999999863
No 290
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.72 E-value=0.00071 Score=62.38 Aligned_cols=22 Identities=41% Similarity=0.690 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999974
No 291
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.70 E-value=0.0059 Score=65.26 Aligned_cols=129 Identities=10% Similarity=0.026 Sum_probs=73.9
Q ss_pred eEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHHHh
Q psy11936 162 FVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLE 241 (548)
Q Consensus 162 L~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (548)
|+.+.--+.+|+.+.|.|+.|+|||||+--|+.... .. ...+.|+.-+..... +
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a-~~-g~~vl~fSlEms~~q---l--------------------- 240 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS-DN-DDVVNLHSLEMGKKE---N--------------------- 240 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHH-HT-TCEEEEECSSSCTTH---H---------------------
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHH-Hc-CCEEEEEECCCCHHH---H---------------------
Confidence 444433588999999999999999999887764211 11 334555543321110 0
Q ss_pred hhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC
Q psy11936 242 AADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTN 321 (548)
Q Consensus 242 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn 321 (548)
.. ++ +....|++.......-..|+..+.+|+.-|...+.+.+++|.|+|.
T Consensus 241 ---------------~~------------R~--~~~~~~i~~~~l~~g~~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~- 290 (444)
T 3bgw_A 241 ---------------IK------------RL--IVTAGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAG- 290 (444)
T ss_dssp ---------------HH------------HH--HHHHSCCCHHHHHHTGGGTCCSCHHHHHHHHHHHHTSCEEEECCSS-
T ss_pred ---------------HH------------HH--HHHHcCCCHHHHhcccCCCCHHHHHHHHHHHHHHhcCCEEEECCCC-
Confidence 00 00 0011233311111100128888888998888888888999999874
Q ss_pred CCCHHHHHH-HHHHHhhcCCe--EEEEec
Q psy11936 322 HLDLNAVIW-LDNYLQGWKKT--LLIVSH 347 (548)
Q Consensus 322 ~LD~~s~~~-L~~~L~~~~~T--vIiVSH 347 (548)
+++..... +..+..+.+.. +|||-+
T Consensus 291 -~s~~~i~~~ir~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 291 -QSVNYIWSKTRQTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp -CBHHHHHHHHHHHHHHSCSSCEEEEEEC
T ss_pred -CCHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 66665443 33444445556 777654
No 292
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.70 E-value=0.0014 Score=69.76 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=28.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC----C------CCCCeEEEEeceee
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRDL----K------VPPNIDILYCEQEV 212 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~~----~------~~~~g~I~~~~q~i 212 (548)
+++|||+||||||||++.|+|... . .+..+.+.+.++.+
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 799999999999999999998632 0 13345666666544
No 293
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.69 E-value=0.0027 Score=61.69 Aligned_cols=52 Identities=19% Similarity=0.149 Sum_probs=38.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecC----------HHHHHhhcCEEEEEe
Q psy11936 310 EPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHD----------QSFLDNVCNEIIHLD 363 (548)
Q Consensus 310 ~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD----------~~~l~~vadrIi~L~ 363 (548)
+++++++||-- .|+....+.+. .|.+.+.+||++-|+ ...+..+||+|..|.
T Consensus 89 ~~dvViIDEaQ-~l~~~~ve~l~-~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQ-FFDDRICEVAN-ILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGG-GSCTHHHHHHH-HHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCc-cCcHHHHHHHH-HHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 58999999996 48877555554 444558899999994 344556899999875
No 294
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.64 E-value=0.0078 Score=55.81 Aligned_cols=41 Identities=17% Similarity=0.231 Sum_probs=30.4
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CeEEEEecCHH
Q psy11936 309 IEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIVSHDQS 350 (548)
Q Consensus 309 ~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~--~TvIiVSHD~~ 350 (548)
.++.+|++||. ..++......|..++.... ..+|++|....
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 46889999994 6678888888888887653 45677776653
No 295
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.64 E-value=0.00097 Score=60.33 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+++|+|++||||||+.+.|+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999985
No 296
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.61 E-value=0.00099 Score=63.30 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=24.8
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
.+.+|.+++|+|++||||||+.+.|++.
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999999863
No 297
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.61 E-value=0.00061 Score=66.61 Aligned_cols=33 Identities=39% Similarity=0.523 Sum_probs=23.2
Q ss_pred eeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 161 LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 161 iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
.+.++++.+..| +.|+||+|+|||||+++|++.
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHH
Confidence 344555555555 889999999999999999974
No 298
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.60 E-value=0.016 Score=62.52 Aligned_cols=27 Identities=19% Similarity=0.121 Sum_probs=24.2
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
-+.+|+.+.|.|++|+|||||+--|+-
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 588999999999999999999877763
No 299
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.58 E-value=0.012 Score=62.93 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
++.+++++|++|+||||++..|+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 467999999999999999998885
No 300
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.50 E-value=0.003 Score=67.45 Aligned_cols=57 Identities=11% Similarity=-0.103 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHH
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFL 352 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l 352 (548)
.+.+-..++...+.+++++|+.-....-....-.++.++|+..+..+|+|-+-.+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 466777788888888998888776655444455788888988888888888765544
No 301
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.50 E-value=0.0016 Score=59.58 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=21.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG 194 (548)
|.++.|+|++||||||+.+.|+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999985
No 302
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.45 E-value=0.0014 Score=61.09 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG~ 195 (548)
.+++|+|++|||||||++.|++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 58999999999999999999864
No 303
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.44 E-value=0.0017 Score=59.80 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=21.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG 194 (548)
|-+++|+|++||||||+.+.|+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999999974
No 304
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.41 E-value=0.0016 Score=58.58 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q psy11936 174 RYGLVGPNGHGKTTLLRHIA 193 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLa 193 (548)
+++|+|++||||||+.+.|.
T Consensus 3 ~I~l~G~~GsGKsT~a~~L~ 22 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLLK 22 (179)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999993
No 305
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.41 E-value=0.016 Score=70.95 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=24.7
Q ss_pred EECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 169 IANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 169 I~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
|.+|+.+.|.||+|+|||||+..++.
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~ 754 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIA 754 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHH
Confidence 89999999999999999999998875
No 306
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.37 E-value=0.013 Score=71.88 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=23.8
Q ss_pred EECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 169 IANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 169 I~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
|.+|.++.|.|+.|+|||||+-.++.
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~ 405 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIA 405 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 88999999999999999999887763
No 307
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.36 E-value=0.0018 Score=61.60 Aligned_cols=24 Identities=29% Similarity=0.301 Sum_probs=21.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.+-+++|+|++||||||++++|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999986
No 308
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.35 E-value=0.0018 Score=60.18 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+++|+|++||||||+.+.|+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999986
No 309
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.30 E-value=0.0017 Score=59.49 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+++|+|++||||||+.+.|+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999985
No 310
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.27 E-value=0.0021 Score=62.89 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=21.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.-+++|+||+||||||+.+.|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999984
No 311
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.24 E-value=0.0072 Score=57.17 Aligned_cols=52 Identities=12% Similarity=0.158 Sum_probs=38.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCH----------HHHHhhcCEEEEEe
Q psy11936 310 EPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQ----------SFLDNVCNEIIHLD 363 (548)
Q Consensus 310 ~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~----------~~l~~vadrIi~L~ 363 (548)
+.+++++||-- .||+..+..+..+. ..+..||+..+|. ..+..+||.|..|.
T Consensus 81 ~~dvViIDEaq-fl~~~~v~~l~~l~-~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQ-FFDDEIVEIVNKIA-ESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGG-GSCTHHHHHHHHHH-HTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCC-CCCHHHHHHHHHHH-hCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 57999999954 48877766655544 4478999998865 45567899998875
No 312
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.22 E-value=0.0015 Score=68.73 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=24.4
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
.+..|.++||||+||+||||||++|+|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3457789999999999999999999985
No 313
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.18 E-value=0.0026 Score=57.86 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=20.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG 194 (548)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999984
No 314
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.18 E-value=0.0022 Score=63.39 Aligned_cols=44 Identities=20% Similarity=0.096 Sum_probs=30.9
Q ss_pred CCCCCCHHHHHHHHHHHhh----cCCeEEEEecCHHHHHhhcCEEEEE
Q psy11936 319 PTNHLDLNAVIWLDNYLQG----WKKTLLIVSHDQSFLDNVCNEIIHL 362 (548)
Q Consensus 319 PTn~LD~~s~~~L~~~L~~----~~~TvIiVSHD~~~l~~vadrIi~L 362 (548)
|||+++..++..+.+.+.. ...+..+.+|....+...++++..+
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~ 191 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHISEL 191 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHHHHH
Confidence 9999998777666666543 2345566778888888888776544
No 315
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.18 E-value=0.0025 Score=58.88 Aligned_cols=24 Identities=29% Similarity=0.301 Sum_probs=21.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.+.++.|+|++||||||+.+.|+.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999984
No 316
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.17 E-value=0.0024 Score=59.48 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=20.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG 194 (548)
.+++|+|++||||||+.+.|+.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999996
No 317
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.16 E-value=0.0025 Score=62.75 Aligned_cols=21 Identities=33% Similarity=0.393 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+++|+||||||||||.+.|++
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999999986
No 318
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.15 E-value=0.0031 Score=58.84 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
+|-+++|+|+.||||||+.+.|+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999863
No 319
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.15 E-value=0.0026 Score=58.49 Aligned_cols=25 Identities=40% Similarity=0.341 Sum_probs=22.2
Q ss_pred ECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 170 ANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 170 ~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
..+.++.|+|++||||||+.+.|+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 3567899999999999999999983
No 320
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.14 E-value=0.0026 Score=60.07 Aligned_cols=20 Identities=40% Similarity=0.765 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q psy11936 175 YGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 175 igLvGpNGsGKSTLLklLaG 194 (548)
+.|+||||||||||++.|..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998864
No 321
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.14 E-value=0.003 Score=58.11 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=21.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.+..+.|+|+.||||||+.+.|+.
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 366899999999999999999984
No 322
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.13 E-value=0.0013 Score=61.84 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+++|+|++|||||||++.|+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999985
No 323
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.11 E-value=0.002 Score=63.18 Aligned_cols=28 Identities=29% Similarity=0.203 Sum_probs=24.6
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
....+.++.|+|++||||||+.+.|+..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4556789999999999999999999863
No 324
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.09 E-value=0.013 Score=60.31 Aligned_cols=25 Identities=40% Similarity=0.517 Sum_probs=21.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
...-+.|.||.|+|||||+++|+..
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4557899999999999999999863
No 325
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.06 E-value=0.0033 Score=58.17 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=22.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
++-+++|+|+.||||||+.+.|+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999984
No 326
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.03 E-value=0.0036 Score=58.56 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=21.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
+|-+++|.|+.||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999999985
No 327
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.02 E-value=0.0035 Score=57.70 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=20.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG 194 (548)
+-+++|+|+.||||||+.+.|+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999974
No 328
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.97 E-value=0.0035 Score=58.55 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+++|.|++||||||+.+.|+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999986
No 329
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.96 E-value=0.0038 Score=58.60 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=22.6
Q ss_pred ECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 170 ANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 170 ~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
..|-+++|+|+.||||||+.+.|+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3678999999999999999999974
No 330
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.92 E-value=0.0038 Score=58.63 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=22.9
Q ss_pred EECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 169 IANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 169 I~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
..+|-+++|+|+.||||||+.+.|+.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999999984
No 331
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.90 E-value=0.004 Score=57.21 Aligned_cols=23 Identities=30% Similarity=0.522 Sum_probs=21.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG~ 195 (548)
=.++|+|+.|||||||++.|++.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999975
No 332
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.89 E-value=0.0039 Score=57.30 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
++.|+|+.||||||+.+.|+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999984
No 333
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.88 E-value=0.0042 Score=57.46 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+++|.|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999985
No 334
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.81 E-value=0.0035 Score=57.44 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=17.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
++.++.|+|++||||||+.+.|+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999984
No 335
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.79 E-value=0.0049 Score=54.80 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.|.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 336
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.79 E-value=0.0041 Score=62.45 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=21.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.|..+.|+||+|||||||.+.|+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999985
No 337
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.79 E-value=0.0047 Score=61.55 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|+|++|||||||++.|+|.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999985
No 338
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.76 E-value=0.0054 Score=54.99 Aligned_cols=22 Identities=41% Similarity=0.557 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.+++.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5899999999999999999975
No 339
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.75 E-value=0.0051 Score=57.14 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG 194 (548)
-+++|+|++|||||||+..|+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999885
No 340
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.73 E-value=0.0057 Score=54.47 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.+++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999974
No 341
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.72 E-value=0.0053 Score=56.88 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=22.3
Q ss_pred ECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 170 ANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 170 ~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
..+-+++|+|+.||||||+.+.|+.
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999984
No 342
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.72 E-value=0.0043 Score=55.26 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|+|+.|+|||||++.++|.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 5899999999999999999874
No 343
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.71 E-value=0.0054 Score=57.98 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+++|+|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999974
No 344
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.71 E-value=0.0056 Score=54.08 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 345
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.71 E-value=0.0043 Score=56.93 Aligned_cols=22 Identities=50% Similarity=0.697 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|++|+|||||++.+++.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 346
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.70 E-value=0.0058 Score=54.55 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|+|+.|+|||||++.+++.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999864
No 347
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.70 E-value=0.014 Score=62.92 Aligned_cols=74 Identities=18% Similarity=0.163 Sum_probs=58.6
Q ss_pred hcccCCCCHHHHHHHHHHH--HHcc---------------CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCH
Q psy11936 287 DRATKNFSGGWRMRVSLAR--ALYI---------------EPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQ 349 (548)
Q Consensus 287 ~~~~~~LSGGqkqRvaLAr--aL~~---------------~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~ 349 (548)
.+..+.+||||+|-..+|. ++++ .-.+++|||. |-+|...+...++++++++.=+||++=+
T Consensus 374 s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~lglQliiatP~- 451 (483)
T 3euj_A 374 RAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERLDMQLLIAAPE- 451 (483)
T ss_dssp ECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHTTCEEEEEESS-
T ss_pred ecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHcCCEEEEECcc-
Confidence 3447789999999544433 3322 2358999999 9999999999999999999999999988
Q ss_pred HHHHhhcCEEEEEe
Q psy11936 350 SFLDNVCNEIIHLD 363 (548)
Q Consensus 350 ~~l~~vadrIi~L~ 363 (548)
.+..++|.++.|-
T Consensus 452 -~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 -NISPERGTTYKLV 464 (483)
T ss_dssp -SCCCSSSEEEECC
T ss_pred -hhhhccCceEEEE
Confidence 5666788888764
No 348
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.70 E-value=0.0051 Score=54.23 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 349
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.70 E-value=0.00012 Score=74.63 Aligned_cols=60 Identities=7% Similarity=-0.030 Sum_probs=50.3
Q ss_pred cEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeeeeeccceee
Q psy11936 466 ILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAYEGMKPLLV 537 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y~~~~~~~~ 537 (548)
.|++++|+|+|+ .++|+++||+. .|+.++|.||| |||+++|+|.+ +|.| ++|..|.|.+.
T Consensus 101 ~i~~~~vs~~y~--~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I-------~~~v~q~~~lf 165 (305)
T 2v9p_A 101 FFNYQNIELITF--INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV-------LSFANHKSHFW 165 (305)
T ss_dssp HHHHTTCCHHHH--HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE-------ECGGGTTSGGG
T ss_pred eEEEEEEEEEcC--hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE-------EEEecCccccc
Confidence 478899999996 57999999986 99999999995 89999999998 7777 45667766554
No 350
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.68 E-value=0.0058 Score=54.00 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
No 351
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.67 E-value=0.0059 Score=54.05 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 352
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.64 E-value=0.0068 Score=57.63 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
+|-+++|+|+.||||||+.+.|+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999984
No 353
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.64 E-value=0.0062 Score=54.23 Aligned_cols=23 Identities=22% Similarity=0.513 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999854
No 354
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.63 E-value=0.0059 Score=58.43 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=21.4
Q ss_pred ECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 170 ANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 170 ~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
..+-+++|+|+.||||||+.+.|+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999984
No 355
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.63 E-value=0.0062 Score=54.32 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 356
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.63 E-value=0.0062 Score=56.04 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+++|+|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
No 357
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.63 E-value=0.042 Score=68.27 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=24.1
Q ss_pred EECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 169 IANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 169 I~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
|.+|.++.|.||+|+|||||+..++.
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~ 405 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIA 405 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 88999999999999999999887764
No 358
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.62 E-value=0.0065 Score=54.81 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+++|+|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999985
No 359
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.61 E-value=0.0055 Score=55.15 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.|++..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 360
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.60 E-value=0.0055 Score=55.53 Aligned_cols=22 Identities=36% Similarity=0.455 Sum_probs=20.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG 194 (548)
.+++|+|+.||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999984
No 361
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.60 E-value=0.0063 Score=57.57 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+++|+|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999974
No 362
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.59 E-value=0.0065 Score=54.74 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|||||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 68999999999999999998753
No 363
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.59 E-value=0.0065 Score=53.97 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 364
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.59 E-value=0.0065 Score=53.90 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 365
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.58 E-value=0.0068 Score=54.57 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
..-.++|+|+.|+|||||++.+++.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999874
No 366
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.55 E-value=0.0062 Score=54.22 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
No 367
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.54 E-value=0.0064 Score=63.38 Aligned_cols=45 Identities=22% Similarity=0.319 Sum_probs=35.2
Q ss_pred cCCCEEEEeCCCCCCC---HHHHHHHHHHHh---hcCCeEEEEecCHHHHH
Q psy11936 309 IEPTLLLLDEPTNHLD---LNAVIWLDNYLQ---GWKKTLLIVSHDQSFLD 353 (548)
Q Consensus 309 ~~P~lLLLDEPTn~LD---~~s~~~L~~~L~---~~~~TvIiVSHD~~~l~ 353 (548)
..|-++++||-=+-|+ +.....+.++++ .++..++++||.+..+.
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~ 311 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFL 311 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGG
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhh
Confidence 3588999999998885 556666666654 56789999999998664
No 368
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.54 E-value=0.007 Score=54.47 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999875
No 369
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.53 E-value=0.0064 Score=55.80 Aligned_cols=23 Identities=26% Similarity=0.249 Sum_probs=20.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG 194 (548)
+.+++|+|+.||||||+.+.|+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999984
No 370
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.51 E-value=0.0065 Score=54.66 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 371
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.51 E-value=0.0062 Score=55.94 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG~ 195 (548)
=.++|+|+.|+|||||++.|.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999974
No 372
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.51 E-value=0.027 Score=60.02 Aligned_cols=28 Identities=36% Similarity=0.447 Sum_probs=23.6
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
-+.+-.=+.|.||.|||||+|.++||+.
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3555566899999999999999999973
No 373
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.51 E-value=0.0062 Score=55.61 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
+++|+|+.|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 79999999999999999999753
No 374
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.48 E-value=0.0073 Score=55.19 Aligned_cols=22 Identities=41% Similarity=0.486 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|+|+.|+|||||++.|.|.
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999874
No 375
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.47 E-value=0.0086 Score=56.02 Aligned_cols=24 Identities=38% Similarity=0.477 Sum_probs=21.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.+-+++|+|+.||||||+.+.|+.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 355899999999999999999984
No 376
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.45 E-value=0.0077 Score=54.69 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
No 377
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.44 E-value=0.0065 Score=55.85 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=20.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG 194 (548)
-+++|+|+.||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999984
No 378
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.44 E-value=0.0078 Score=53.43 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.+++.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 379
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.44 E-value=0.0084 Score=57.83 Aligned_cols=61 Identities=16% Similarity=0.199 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHH-HHHHHHHhhcC-C-eEEE-EecCHHHHHhh
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTN-HLDLNAV-IWLDNYLQGWK-K-TLLI-VSHDQSFLDNV 355 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn-~LD~~s~-~~L~~~L~~~~-~-TvIi-VSHD~~~l~~v 355 (548)
.+.|...+... ..+.+.++|++||.-. ++|.... ..+..++.... . ++++ .|.+.+.+.++
T Consensus 161 ~Tpg~l~~~l~--~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~ 226 (235)
T 3llm_A 161 CTVGVLLRKLE--AGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEY 226 (235)
T ss_dssp EEHHHHHHHHH--HCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHH
T ss_pred ECHHHHHHHHH--hhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHH
Confidence 45577666643 3689999999999976 5777665 34445554432 2 3333 34554444443
No 380
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.44 E-value=0.0068 Score=55.21 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 58999999999999999999753
No 381
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.43 E-value=0.0077 Score=55.38 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.|++..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 382
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.43 E-value=0.0045 Score=56.20 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.=.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999999985
No 383
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.43 E-value=0.0078 Score=55.01 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.|++..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999999853
No 384
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.43 E-value=0.0079 Score=56.23 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=20.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.-+++|+|+.||||||+.+.|+.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999984
No 385
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.42 E-value=0.0079 Score=54.71 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.|++..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999743
No 386
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.41 E-value=0.0081 Score=56.76 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=20.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG 194 (548)
-++||+|+.||||||+.+.|+.
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999984
No 387
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.40 E-value=0.009 Score=54.12 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=20.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG 194 (548)
+.++|+|+.||||||+.+.|+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999985
No 388
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.40 E-value=0.0082 Score=53.55 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998643
No 389
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.40 E-value=0.009 Score=53.78 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.+++.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 390
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.39 E-value=0.0084 Score=53.19 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.+.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 391
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.37 E-value=0.013 Score=55.96 Aligned_cols=38 Identities=18% Similarity=0.186 Sum_probs=29.4
Q ss_pred CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 157 KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 157 ~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
.....+...-+.+ .|..+.|+||+|||||||...|+..
T Consensus 20 a~~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 20 AERRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp -CCCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CcceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3444566655555 6889999999999999999999853
No 392
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.36 E-value=0.0072 Score=57.57 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=21.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.+-++.|+|+.||||||+.+.|+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999984
No 393
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.33 E-value=0.0085 Score=58.47 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=20.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG 194 (548)
-+|||.|+.||||||+.+.|+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999985
No 394
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.30 E-value=0.009 Score=54.66 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|..|+|||||++.|++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 395
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.30 E-value=0.0091 Score=53.98 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.|++..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 58999999999999999998753
No 396
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.29 E-value=0.0092 Score=54.97 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|+|++|+|||||++.+++.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999877654
No 397
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.29 E-value=0.01 Score=56.12 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.+..+.|.||+|+|||||++.|+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 578899999999999999999985
No 398
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.29 E-value=0.0093 Score=53.51 Aligned_cols=23 Identities=30% Similarity=0.664 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999999753
No 399
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.29 E-value=0.0085 Score=53.79 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.+++.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 400
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.28 E-value=0.0092 Score=62.11 Aligned_cols=24 Identities=33% Similarity=0.589 Sum_probs=21.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
|-.++|||.+|+|||||++.|+|.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 457999999999999999999984
No 401
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.27 E-value=0.0095 Score=53.71 Aligned_cols=23 Identities=39% Similarity=0.510 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 68999999999999999998753
No 402
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.26 E-value=0.0099 Score=58.44 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.+-++.|+|++||||||+.+.|+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 466899999999999999999984
No 403
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.19 E-value=0.01 Score=56.82 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+++|+|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999984
No 404
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.18 E-value=0.011 Score=53.42 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 405
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.17 E-value=0.026 Score=59.95 Aligned_cols=28 Identities=39% Similarity=0.514 Sum_probs=23.2
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
-+.+-.=+.|.||.|||||+|.++||+.
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3445555899999999999999999963
No 406
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.17 E-value=0.023 Score=61.37 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=22.7
Q ss_pred EECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 169 IANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 169 I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
+....-+.|.||+|+|||||+++|+..
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 345556899999999999999999863
No 407
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.16 E-value=0.021 Score=65.76 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=22.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q psy11936 310 EPTLLLLDEPTNHLDLNAVIWLDNYLQG 337 (548)
Q Consensus 310 ~P~lLLLDEPTn~LD~~s~~~L~~~L~~ 337 (548)
.+.+|||||. ..+++.....|.++|..
T Consensus 660 ~~~vl~lDEi-~~l~~~~~~~Ll~~l~~ 686 (854)
T 1qvr_A 660 PYSVILFDEI-EKAHPDVFNILLQILDD 686 (854)
T ss_dssp SSEEEEESSG-GGSCHHHHHHHHHHHTT
T ss_pred CCeEEEEecc-cccCHHHHHHHHHHhcc
Confidence 3579999999 56899999999999874
No 408
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.15 E-value=0.01 Score=59.93 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRDL 197 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~~ 197 (548)
+++|||.+|+|||||++.|.|..+
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~~ 32 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVKV 32 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCce
Confidence 699999999999999999998643
No 409
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.14 E-value=0.015 Score=59.38 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=32.0
Q ss_pred CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCC
Q psy11936 158 GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 158 ~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~ 196 (548)
....+++..+.+ .|.-++|+|+||+|||||...|.+.+
T Consensus 131 ~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g 168 (314)
T 1ko7_A 131 RTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRG 168 (314)
T ss_dssp EEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred cceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcC
Confidence 345778888888 78889999999999999999888643
No 410
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.13 E-value=0.01 Score=53.98 Aligned_cols=23 Identities=26% Similarity=0.641 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
No 411
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.13 E-value=0.0098 Score=58.58 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|..|||||||++.|+|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999985
No 412
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.13 E-value=0.0098 Score=59.38 Aligned_cols=22 Identities=27% Similarity=0.560 Sum_probs=20.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG 194 (548)
-+|+|+|+.||||||+.+.|+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999984
No 413
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.12 E-value=0.0093 Score=62.17 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.+||||++|+|||||++.|++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999874
No 414
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.12 E-value=0.0081 Score=55.97 Aligned_cols=21 Identities=38% Similarity=0.545 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
.++|||++|+|||||++.++|
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999975
No 415
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.11 E-value=0.011 Score=54.71 Aligned_cols=23 Identities=26% Similarity=0.561 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
No 416
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.11 E-value=0.027 Score=59.90 Aligned_cols=28 Identities=36% Similarity=0.419 Sum_probs=23.7
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
-+.+-.-+.|.||.|||||+|.++||+.
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 3555566899999999999999999973
No 417
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.10 E-value=0.011 Score=53.55 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999999875
No 418
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.10 E-value=0.011 Score=54.11 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.|.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999753
No 419
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.10 E-value=0.01 Score=54.24 Aligned_cols=23 Identities=35% Similarity=0.405 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+++..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 420
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.09 E-value=0.011 Score=54.57 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
No 421
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.08 E-value=0.012 Score=54.07 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.|++..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 422
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.07 E-value=0.012 Score=53.30 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 423
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.07 E-value=0.011 Score=54.79 Aligned_cols=21 Identities=43% Similarity=0.593 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+++|||.+|+|||||++.++|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999986
No 424
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.07 E-value=0.011 Score=55.42 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.|++..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999753
No 425
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.04 E-value=0.011 Score=54.31 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.|.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 6899999999999999999874
No 426
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.01 E-value=0.011 Score=57.54 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|||||||++.|+|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999753
No 427
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.01 E-value=0.011 Score=54.42 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.|++..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 428
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.00 E-value=0.012 Score=53.66 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=22.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG~~ 196 (548)
+.=.++|+|+.|+|||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578999999999999999998743
No 429
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.99 E-value=0.016 Score=53.28 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+++..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999999754
No 430
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.99 E-value=0.013 Score=56.94 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
++-+++|+|+.||||||+.+.|+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 455899999999999999999974
No 431
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.97 E-value=0.012 Score=55.76 Aligned_cols=21 Identities=33% Similarity=0.327 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+++|+|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999984
No 432
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.94 E-value=0.014 Score=54.11 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999753
No 433
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.94 E-value=0.012 Score=54.71 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.|++..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 78999999999999999999754
No 434
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.94 E-value=0.012 Score=53.23 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.+.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999854
No 435
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.93 E-value=0.012 Score=54.09 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|+|+.|+|||||++.+++.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 6899999999999999999874
No 436
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.92 E-value=0.014 Score=57.60 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|..|||||||++.|+|.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999984
No 437
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.92 E-value=0.015 Score=54.19 Aligned_cols=23 Identities=43% Similarity=0.478 Sum_probs=20.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG~ 195 (548)
..+.|.||+|+|||||+++|+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67889999999999999999863
No 438
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.91 E-value=0.014 Score=53.73 Aligned_cols=23 Identities=30% Similarity=0.655 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.|.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 439
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.90 E-value=0.014 Score=53.48 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.+.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 440
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.87 E-value=0.0075 Score=56.83 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=21.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG~~ 196 (548)
-+++|+|..|+|||||++.|+|..
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999853
No 441
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.86 E-value=0.012 Score=53.12 Aligned_cols=23 Identities=26% Similarity=0.593 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
+++|+|+.|+|||||++.+++..
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
No 442
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.84 E-value=0.013 Score=54.15 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.|++.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 443
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.84 E-value=0.011 Score=58.35 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|.+|+|||||++.|.|..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999988753
No 444
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.84 E-value=0.014 Score=53.40 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.+.+.
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999964
No 445
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.84 E-value=0.014 Score=58.97 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
+++|+|+.|+|||||++.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999864
No 446
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.83 E-value=0.013 Score=53.71 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
+++|+|..|+|||||++.|++..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998753
No 447
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.83 E-value=0.013 Score=54.99 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+++..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998743
No 448
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.82 E-value=0.014 Score=54.33 Aligned_cols=22 Identities=27% Similarity=0.646 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.|.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 449
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.82 E-value=0.01 Score=54.41 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.|++.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 450
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.81 E-value=0.014 Score=58.00 Aligned_cols=22 Identities=36% Similarity=0.662 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|..|||||||++.|+|.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 451
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.80 E-value=0.015 Score=53.37 Aligned_cols=23 Identities=43% Similarity=0.478 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+++..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 452
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.80 E-value=0.0078 Score=60.52 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=17.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG 194 (548)
+-++||.|++||||||+.+.|+.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999974
No 453
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.78 E-value=0.016 Score=53.00 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
No 454
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.77 E-value=0.016 Score=53.55 Aligned_cols=23 Identities=22% Similarity=0.524 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+++..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 68999999999999999998753
No 455
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.75 E-value=0.013 Score=53.37 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999974
No 456
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.74 E-value=0.015 Score=55.24 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG 194 (548)
|-+++|+|+.||||||+.+.|+.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56799999999999999999984
No 457
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.74 E-value=0.016 Score=53.73 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG~ 195 (548)
=.++|+|+.|+|||||++.+++.
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999999875
No 458
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.74 E-value=0.019 Score=51.77 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.+..+.|+||.|+|||||++.++.
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 356788999999999999999975
No 459
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.73 E-value=0.015 Score=54.87 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|+|+.|+|||||++.|++.
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999863
No 460
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.72 E-value=0.015 Score=54.14 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998753
No 461
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.72 E-value=0.016 Score=53.87 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=21.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG~~ 196 (548)
=.++|+|+.|+|||||++.|++..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 368999999999999999998753
No 462
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.70 E-value=0.018 Score=54.06 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.|++.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999975
No 463
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.70 E-value=0.015 Score=55.34 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.|++.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
No 464
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.68 E-value=0.016 Score=53.66 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|..|+|||||++.+.+.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999874
No 465
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.68 E-value=0.02 Score=51.65 Aligned_cols=23 Identities=35% Similarity=0.335 Sum_probs=20.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG~ 195 (548)
=.++|+|+.|+|||||++.+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 466
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.67 E-value=0.1 Score=50.86 Aligned_cols=52 Identities=15% Similarity=0.208 Sum_probs=42.7
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecC----------HHHHHhhcCEEEEEe
Q psy11936 309 IEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHD----------QSFLDNVCNEIIHLD 363 (548)
Q Consensus 309 ~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD----------~~~l~~vadrIi~L~ 363 (548)
.+.+++++||---..| +..+.+.+.+.+..||+.-+| ...+..+||.|..|.
T Consensus 89 ~~~dvViIDEaQF~~~---v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD---IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT---HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh---HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999988765 777778888888999999999 334556899998874
No 467
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.67 E-value=0.018 Score=53.21 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG~ 195 (548)
=.++|+|+.|+|||||++.+.+.
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
No 468
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.66 E-value=0.057 Score=56.85 Aligned_cols=27 Identities=44% Similarity=0.589 Sum_probs=22.1
Q ss_pred EECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 169 IANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 169 I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
+.+-.=+.|.||.|||||+|.++||+.
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 333344889999999999999999973
No 469
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.63 E-value=0.018 Score=52.98 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+++..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 68999999999999999888743
No 470
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.63 E-value=0.016 Score=58.01 Aligned_cols=23 Identities=35% Similarity=0.648 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|||||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999864
No 471
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.62 E-value=0.016 Score=54.11 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+++..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999999753
No 472
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.61 E-value=0.016 Score=54.50 Aligned_cols=23 Identities=35% Similarity=0.405 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+++..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999854
No 473
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.57 E-value=0.021 Score=61.27 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=28.0
Q ss_pred eeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 161 LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 161 iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
+++.+ +.+-+|++++|+|++|+|||||++.|+.
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~ 173 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIH 173 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHh
Confidence 34444 6778999999999999999999999875
No 474
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.57 E-value=0.018 Score=57.24 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=20.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG 194 (548)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999984
No 475
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.57 E-value=0.018 Score=54.30 Aligned_cols=22 Identities=45% Similarity=0.581 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.+++.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999874
No 476
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.51 E-value=0.019 Score=53.66 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+++..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998753
No 477
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.51 E-value=0.018 Score=54.36 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=20.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG 194 (548)
+-+++|+|+.||||||+.+.|+.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999986
No 478
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.46 E-value=0.013 Score=53.23 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=9.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999863
No 479
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.45 E-value=0.018 Score=53.47 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+++..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999999753
No 480
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.45 E-value=0.024 Score=54.50 Aligned_cols=24 Identities=42% Similarity=0.596 Sum_probs=21.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.+-++.|+|+.||||||+.+.|+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999984
No 481
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.42 E-value=0.02 Score=59.00 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+++|+||+|||||||.+.|+.
T Consensus 9 lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHH
Confidence 799999999999999999985
No 482
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.40 E-value=0.12 Score=64.19 Aligned_cols=27 Identities=33% Similarity=0.500 Sum_probs=24.6
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
-|.+|..+.|.||.|+|||||...++.
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ 1449 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIA 1449 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999999988863
No 483
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.39 E-value=0.023 Score=54.47 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=22.2
Q ss_pred ECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 170 ANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 170 ~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
-.|-++.|.|+.||||||+++.|+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3688999999999999999999974
No 484
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.36 E-value=0.02 Score=52.50 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999875
No 485
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.35 E-value=0.00055 Score=62.87 Aligned_cols=65 Identities=5% Similarity=-0.189 Sum_probs=48.5
Q ss_pred EeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccceeee-----eeecccee
Q psy11936 470 HNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNVTFA-----YEGMKPLL 536 (548)
Q Consensus 470 ~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~~~~-----y~~~~~~~ 536 (548)
+++++.|++ +.+++++||.. .|..+.|.||| |||+|+|+|.+ |++|.|+. +.++.-. |..||+-+
T Consensus 11 ~~~~~~~g~-~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~~l 86 (158)
T 1htw_A 11 EFSMLRFGK-KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHFDL 86 (158)
T ss_dssp HHHHHHHHH-HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHH-HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceecccc
Confidence 456778854 57899999985 88999999986 89999999999 88887654 4555322 45566544
No 486
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.35 E-value=0.019 Score=56.87 Aligned_cols=24 Identities=29% Similarity=0.624 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRDL 197 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~~ 197 (548)
.++|+|..|+|||||++.|+|..+
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCCc
Confidence 799999999999999999998643
No 487
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.31 E-value=0.024 Score=54.04 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|||.+|+|||||++.++|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999874
No 488
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.31 E-value=0.026 Score=52.77 Aligned_cols=42 Identities=19% Similarity=0.101 Sum_probs=32.8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHH
Q psy11936 309 IEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSF 351 (548)
Q Consensus 309 ~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~ 351 (548)
..|.+|++||.-. ||......|..++... +..+|++|++...
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQK 168 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 4578999999755 8888888888888764 3578888887653
No 489
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=94.31 E-value=0.021 Score=56.55 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=21.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG~ 195 (548)
-.++|+|.+|+|||||++.|+|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~ 122 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGK 122 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred hheEEeCCCCCCHHHHHHHHhcc
Confidence 58899999999999999999975
No 490
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.29 E-value=0.021 Score=55.96 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|..|+|||||++.|+|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999854
No 491
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.28 E-value=0.043 Score=51.28 Aligned_cols=35 Identities=20% Similarity=0.233 Sum_probs=26.9
Q ss_pred eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 160 DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 160 ~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
..++..-+.+ .|.-+.|.|++|+|||||.-.|...
T Consensus 5 ~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 5 QTWHANFLVI-DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3455544444 7888999999999999999888753
No 492
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.27 E-value=0.019 Score=53.12 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG~ 195 (548)
=.++|+|+.|+|||||++.+.+.
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999764
No 493
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.24 E-value=0.023 Score=51.20 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG 194 (548)
+..+.|+||.|+|||||++.++.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 55678999999999999999975
No 494
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.23 E-value=0.019 Score=55.83 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=20.0
Q ss_pred ECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 170 ANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 170 ~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.+|-+|.|.|+.||||||+++.|+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999999974
No 495
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.21 E-value=0.026 Score=55.17 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=22.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
+|-++.|.|++||||||+++.|+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999999974
No 496
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.21 E-value=0.066 Score=51.54 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=38.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecC----------HHHHHhhcCEEEEEe
Q psy11936 310 EPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHD----------QSFLDNVCNEIIHLD 363 (548)
Q Consensus 310 ~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD----------~~~l~~vadrIi~L~ 363 (548)
+.+++++||--- ||...+..|. .|...+..||+.-+| ...|..+||.|..|.
T Consensus 101 ~~dvViIDEaQF-~~~~~V~~l~-~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGDIVEVVQ-VLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTTHHHHHH-HHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHHHHHHHH-HHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 589999999866 8877775444 444557899999884 445667899998875
No 497
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.16 E-value=0.023 Score=55.91 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|..|+|||||++.|+|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 498
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.14 E-value=0.011 Score=55.42 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.|++.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 499
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.11 E-value=0.026 Score=54.44 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=21.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
+|-+++|.|..||||||+++.|+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 366899999999999999999985
No 500
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.11 E-value=0.072 Score=57.01 Aligned_cols=28 Identities=39% Similarity=0.468 Sum_probs=23.7
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
-+.+-.=+.|.||.|||||+|.++||+.
T Consensus 239 Gi~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 239 GIDPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp TCCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 4555666889999999999999999973
Done!