RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11936
(548 letters)
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 306 bits (784), Expect = 1e-95
Identities = 179/467 (38%), Positives = 253/467 (54%), Gaps = 57/467 (12%)
Query: 46 KETPKVDDIPVP-------ASDEVPNKEEVEPEVAAPPQVKEDTKASKDKKLTHKEKKKM 98
K P V + P EV K+ PE P + E A +++ K K++
Sbjct: 86 KPKPSVRSLAAPVRMSDGMDDSEVAKKK---PEPDDGPLLSERDLAKIERR---KRKEER 139
Query: 99 KKDMEFQKQV-ETITKKGGQGHSELGDNFTISQMEKTGGQLAALENAVDIKVENFSISAK 157
++++++Q V E K G + G A++ DI +ENFSIS
Sbjct: 140 QREVQYQAHVAEMEAAKAGMP--------GVYVNHDGNGGGPAIK---DIHMENFSISVG 188
Query: 158 GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK-VPPNIDILYCEQEVVADD 216
G DL V+A++ +A GR YGLVG NG GKTT LR++A + +P N IL+ EQEVV DD
Sbjct: 189 GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDD 248
Query: 217 LTAVESVLKADVKRTELLAECAKLEAADFSSEQQ--------------------EQLKEI 256
TA++ VL D++RT+LL E A+L A E + ++L+EI
Sbjct: 249 TTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEI 308
Query: 257 YEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLL 316
Y+ L+ I A +AE RA ILAGL F+ MQ +ATK FSGGWRMR++LARAL+IEP LLLL
Sbjct: 309 YKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLL 368
Query: 317 DEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376
DEPTNHLDL+AV+WL+ YL W KT ++VSH + FL+ V +I+HL QKL YKG+Y
Sbjct: 369 DEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDILHLHGQKLVTYKGDYDT 428
Query: 377 FKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADE 436
F++ ++ K + K FE E+ ++A + K+ V +R KA +
Sbjct: 429 FERTREEQLKNQQKAFESNERSRSHMQAFIDKFRYNAKRASLVQSRI---------KALD 479
Query: 437 DQGPTELIQKPREYVVKFSFPDPPPLQPPILGLHNVTFAYEGMKPLL 483
G + + +Y +F PD P PPI+ + +F Y G PLL
Sbjct: 480 RLGHVDAVVNDPDYKFEFPTPDDRP-GPPIISFSDASFGYPG-GPLL 524
Score = 71.8 bits (176), Expect = 3e-13
Identities = 59/224 (26%), Positives = 102/224 (45%), Gaps = 30/224 (13%)
Query: 158 GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDL 217
G LF N N I R +VGPNG GK+T+L+ I+ +L
Sbjct: 521 GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISG---------------------EL 559
Query: 218 TAVE-SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRIL 276
+V ++ R + ++ ++ D SS + + + E + R L
Sbjct: 560 QPSSGTVFRSAKVRMAVFSQ-HHVDGLDLSSNPLLYMMRCFPGV-------PEQKLRAHL 611
Query: 277 AGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQ 336
G + + + SGG + RV+ A+ + +P +LLLDEP+NHLDL+AV L L
Sbjct: 612 GSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLV 671
Query: 337 GWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKM 380
++ +L+VSHD+ + +E+ + + K+ + G + +KK
Sbjct: 672 LFQGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYKKT 715
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 294 bits (756), Expect = 2e-93
Identities = 124/347 (35%), Positives = 184/347 (53%), Gaps = 20/347 (5%)
Query: 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDL------KV 199
I +EN S++ L N +L + G R GLVG NG GK+TLL+ +A
Sbjct: 3 MITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTR 62
Query: 200 PPNIDILYCEQEVVADD-LTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYE 258
P + + Y QE D T ++ V++ + ELLAE + A + E L E+
Sbjct: 63 PKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALL-ADPDDELLAELEA 121
Query: 259 ELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDE 318
L+ + + E RA L GLGF DR + SGGWR RV+LARAL EP LLLLDE
Sbjct: 122 LLEELDGWTLEARAEEALLGLGFPDE--DRPVSSLSGGWRRRVALARALLEEPDLLLLDE 179
Query: 319 PTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378
PTNHLDL ++ WL++YL+ + T+++VSHD+ FLDNV I+ LD+ KL YKGNYS +
Sbjct: 180 PTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYL 239
Query: 379 KMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQ 438
+ A++ ++ +EKQ+K + + + + K A K K K KS++++ ++ +
Sbjct: 240 EQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAK--------KAKSRIKRLEKLE 291
Query: 439 GPTELIQKP-REYVVKFSFPDPP-PLQPPILGLHNVTFAYEGMKPLL 483
+ + F FP P L +L NV+ Y+G + LL
Sbjct: 292 ARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLL 338
Score = 138 bits (349), Expect = 4e-35
Identities = 75/240 (31%), Positives = 111/240 (46%), Gaps = 43/240 (17%)
Query: 147 IKVENFSIS-AKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA------SRDLKV 199
++ EN S G L + + I G R +VGPNG GK+TLL+ +A S +KV
Sbjct: 322 LEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKV 381
Query: 200 PPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEE 259
+ I Y +Q D+L ++VL EE
Sbjct: 382 GETVKIGYFDQHR--DELDPDKTVL---------------------------------EE 406
Query: 260 LKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEP 319
L D E R L GF+ Q++ SGG + R+ LA+ L P LLLLDEP
Sbjct: 407 LSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEP 466
Query: 320 TNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKK 379
TNHLD+ ++ L+ L ++ T+L+VSHD+ FLD V I ++ K+ ++G Y + +
Sbjct: 467 TNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVE-DKVEEFEGGYEDYLE 525
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 189 bits (483), Expect = 7e-53
Identities = 119/327 (36%), Positives = 179/327 (54%), Gaps = 31/327 (9%)
Query: 161 LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR------DLKVPPNIDILYCEQEVVA 214
L NA I G++ GLVG NG GK+TLL + + P N + + QE A
Sbjct: 16 LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPA 75
Query: 215 DDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARR 274
A+E V+ D + +L A+ L A+ ++ + I+ +L AI A + RA
Sbjct: 76 LPQPALEYVIDGDREYRQLEAQ---LHDANERNDGH-AIATIHGKLDAIDAWTIRSRAAS 131
Query: 275 ILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNY 334
+L GLGFS +R +FSGGWRMR++LA+AL LLLLDEPTNHLDL+AVIWL+ +
Sbjct: 132 LLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKW 191
Query: 335 LQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEK 394
L+ ++ TL+++SHD+ FLD + ++IIH++QQ L+ Y GNYS F+ A + ++ +E
Sbjct: 192 LKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEVQRATRLAQQQAMYES 251
Query: 395 QEKRIKELKAHGQS-----KKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPRE 449
Q++R+ AH QS + +A K KQ +++ K+ + E P + P
Sbjct: 252 QQERV----AHLQSYIDRFRAKATKA-------KQAQSRIKMLERMELIAPAH-VDNP-- 297
Query: 450 YVVKFSFPDPPPLQPPILGLHNVTFAY 476
FSF P L P+L + V+ Y
Sbjct: 298 --FHFSFRAPESLPNPLLKMEKVSAGY 322
Score = 74.4 bits (183), Expect = 5e-14
Identities = 79/294 (26%), Positives = 132/294 (44%), Gaps = 50/294 (17%)
Query: 172 GRRYGLVGPNGHGKTTLLRHIA------SRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225
G R GL+G NG GK+TL++ +A S ++ + I + Y Q + L+
Sbjct: 338 GSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQL--------EFLR 389
Query: 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAM 285
AD + LA A E EQ+ R L G GF
Sbjct: 390 ADESPLQHLARLAPQE-----LEQK---------------------LRDYLGGFGFQGDK 423
Query: 286 QDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIV 345
T+ FSGG + R+ LA ++ P LLLLDEPTNHLDL+ L L ++ L++V
Sbjct: 424 VTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVV 483
Query: 346 SHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQE--------- 396
SHD+ L + +++ + K+ + G+ +++ + K+ + E +
Sbjct: 484 SHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQWLSDVQKQENQTDEAPKENNANSAQA 543
Query: 397 -KRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPRE 449
K K +A +++ Q +K L ++ EK ++L +A+E G +EL + R+
Sbjct: 544 RKDQKRREAELRTQTQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRK 597
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 146 bits (372), Expect = 5e-38
Identities = 95/290 (32%), Positives = 144/290 (49%), Gaps = 35/290 (12%)
Query: 172 GRRYGLVGPNGHGKTTLLRHIASRD------LKVPPNIDILYCEQEVVAD-DLTAVESV- 223
G + G++G NG GK+TLLR +A D + P I + Y QE D T E+V
Sbjct: 31 GAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVE 90
Query: 224 -----LKADVKRTELLAECAKLEAADFSS--EQQEQLKEIYEELKAIGADSAEPRAR--- 273
+K + R ++ AD + +Q +L+EI + A D A
Sbjct: 91 EGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150
Query: 274 RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDN 333
R D SGG R RV+L R L +P +LLLDEPTNHLD +V WL+
Sbjct: 151 RCPPW--------DADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQ 202
Query: 334 YLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFE 393
+LQ + T++ V+HD+ FLDNV I+ LD+ + ++GNYS + ++ ++R+++ E
Sbjct: 203 HLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYS----SWLEQKEKRLEQEE 258
Query: 394 KQE----KRIK-ELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQ 438
K+E K +K EL+ S K + K+K L R +E + QK +E
Sbjct: 259 KEESARQKALKRELEWVRSSPKARQAKSKARLARYEELLSQEFQKRNETA 308
Score = 91.1 bits (227), Expect = 2e-19
Identities = 71/261 (27%), Positives = 111/261 (42%), Gaps = 42/261 (16%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRD------LKVP 200
I+ EN S L + + + G G++GPNG GK+TL R I ++ +K+
Sbjct: 323 IEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIG 382
Query: 201 PNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEEL 260
+ + Y +Q D L ++V + EI L
Sbjct: 383 ETVKLAYVDQS--RDALDPNKTVWE-----------------------------EISGGL 411
Query: 261 KAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPT 320
I E +R + F + Q + SGG R RV LA+ L +LLLDEPT
Sbjct: 412 DIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPT 471
Query: 321 NHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLD-QQKLYYYKGNYSMFKK 379
N LD+ + L+ L + +++SHD+ FLD + I+ + + +++GNYS
Sbjct: 472 NDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYS---- 527
Query: 380 MYAQKSKERMKEFEKQEKRIK 400
Y + K R+ E Q RIK
Sbjct: 528 EYEEDKKRRLGEDADQPHRIK 548
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 131 bits (333), Expect = 2e-36
Identities = 37/74 (50%), Positives = 52/74 (70%)
Query: 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFL 352
SGG +MR++LA+ L P LLLLDEPTNHLDL ++ L+ L+ + T+++VSHD+ FL
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFL 130
Query: 353 DNVCNEIIHLDQQK 366
D V +II L+ K
Sbjct: 131 DQVATKIIELEDGK 144
Score = 74.0 bits (183), Expect = 9e-16
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRD------LKVP 200
I++EN S + G L + +L I G R GLVG NG GK+TLL+ IA +
Sbjct: 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG 60
Query: 201 PNIDILYCEQ 210
+ I Y EQ
Sbjct: 61 STVKIGYFEQ 70
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 139 bits (353), Expect = 2e-35
Identities = 98/290 (33%), Positives = 141/290 (48%), Gaps = 43/290 (14%)
Query: 176 GLVGPNGHGKTTLLRHIASRD------LKVPPNIDILYCEQEVVAD-DLTAVESV----- 223
G++G NG GK+TLLR +A D + P I + Y QE D + T E+V
Sbjct: 37 GVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVA 96
Query: 224 -LKADVKRTELLAECAKLEAADFSS--EQQEQLKEIYEELKAIGADSAEPRARRILAGLG 280
+KA + R + ADF + +Q +L+EI + A DS
Sbjct: 97 EVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQ------------ 144
Query: 281 FSRAMQ-------DRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDN 333
AM D SGG R RV+L R L +P +LLLDEPTNHLD +V WL+
Sbjct: 145 LEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQ 204
Query: 334 YLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFE 393
+L + T++ V+HD+ FLDNV I+ LD+ + ++GNYS + ++ +R+ + E
Sbjct: 205 FLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYS----SWLEQKAKRLAQEE 260
Query: 394 KQE-KRIKELKAH----GQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQ 438
KQE R K LK QS K + K+K L R +E + QK +E
Sbjct: 261 KQEAARQKALKRELEWVRQSPKARQAKSKARLARYEELLSEEYQKRNETN 310
Score = 79.8 bits (198), Expect = 9e-16
Identities = 58/234 (24%), Positives = 100/234 (42%), Gaps = 46/234 (19%)
Query: 176 GLVGPNGHGKTTLLRHIA------SRDLKVPPNIDILYCEQ--EVVADDLTAVESVLKAD 227
G++GPNG GK+TL + I S +K+ + + Y +Q + + + T E +
Sbjct: 354 GIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEI---- 409
Query: 228 VKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQD 287
S + +K +G + E +R + F Q
Sbjct: 410 -------------------SGGLDIIK--------VG--NREIPSRAYVGRFNFKGGDQQ 440
Query: 288 RATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSH 347
+ SGG R R+ LA+ L +LLLDEPTN LD+ + L+ L + +++SH
Sbjct: 441 KKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVISH 500
Query: 348 DQSFLDNVCNEIIHL-DQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIK 400
D+ FLD + I+ ++ +++GN+ Y + K R+ + RIK
Sbjct: 501 DRWFLDRIATHILAFEGDSQVEWFEGNFQ----EYEEDKKRRLGADAARPHRIK 550
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 125 bits (316), Expect = 1e-30
Identities = 88/280 (31%), Positives = 148/280 (52%), Gaps = 27/280 (9%)
Query: 161 LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK-------VPPNIDILYCEQEVV 213
LF N ++ G RYGL+G NG GK+T ++ I DL+ + PN + Q+
Sbjct: 16 LFENISVKFGGGNRYGLIGANGCGKSTFMK-ILGGDLEPSAGNVSLDPNERLGKLRQDQF 74
Query: 214 A-DDLTAVESVLKADVKRTELLAE----CAKLEAADFSSEQQEQLKEIYEELKAIGADSA 268
A ++ T +++V+ + E+ E A E ++ + L+ + E+ +A
Sbjct: 75 AFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEM---DGYTA 131
Query: 269 EPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAV 328
E RA +L G+G + GW++RV LA+AL+ P +LLLDEPTN+LD+N +
Sbjct: 132 EARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTI 191
Query: 329 IWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYA-QKSKE 387
WL++ L T++I+SHD+ FL++VC + LD +L Y GNY + M A +++E
Sbjct: 192 RWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNYDEY--MTAATQARE 249
Query: 388 R-MKEFEKQEKRIKELK-------AHGQSKKQAEKKTKEV 419
R + + K++ +I EL+ A+ KQA + K++
Sbjct: 250 RLLADNAKKKAQIAELQSFVSRFSANASKAKQATSRAKQI 289
Score = 95.7 bits (239), Expect = 7e-21
Identities = 69/238 (28%), Positives = 109/238 (45%), Gaps = 41/238 (17%)
Query: 143 NAVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA------SRD 196
NA++ VEN + LF N NLL+ G R ++G NG GKTTLLR + S
Sbjct: 318 NALE--VENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGT 375
Query: 197 LKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEI 256
+K N +I Y Q+ A DF E L +
Sbjct: 376 VKWSENANIGYYAQD-----------------------------HAYDF--ENDLTLFDW 404
Query: 257 YEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLL 316
+ + G D E R L L FS+ ++ K SGG + R+ + + +P +L++
Sbjct: 405 MSQWRQEGDD--EQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVM 462
Query: 317 DEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374
DEPTNH+D+ ++ L+ L+ ++ TL+ VSHD+ F+ ++ II + + + G Y
Sbjct: 463 DEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTY 520
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 116 bits (292), Expect = 2e-27
Identities = 76/235 (32%), Positives = 116/235 (49%), Gaps = 29/235 (12%)
Query: 161 LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA------------SRDLKV------PPN 202
L NA L I + R LVG NG GK+TL++ + +DL V PP
Sbjct: 18 LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPR 77
Query: 203 IDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA 262
++ + VA+ + LK + L+ D S + +L ++ E+L
Sbjct: 78 -NVEGTVYDFVAEGIEEQAEYLKRYHDISHLVET-------DPSEKNLNELAKLQEQLDH 129
Query: 263 IGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNH 322
E R +LA LG D A + SGGW + +L RAL P +LLLDEPTNH
Sbjct: 130 HNLWQLENRINEVLAQLGLD---PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNH 186
Query: 323 LDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377
LD+ + WL+ +L+ ++ +++ +SHD+SF+ N+ I+ LD+ KL Y GNY +
Sbjct: 187 LDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQY 241
Score = 80.0 bits (198), Expect = 8e-16
Identities = 85/304 (27%), Positives = 131/304 (43%), Gaps = 76/304 (25%)
Query: 149 VENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYC 208
+EN + G L + + + G + L+GPNG GKTTLL+ L
Sbjct: 322 MENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLK---------------LML 366
Query: 209 EQEVVADDLTAVESVLKADVKRTELLAECA-KLEAADFSSEQQEQLKEIYEELKAIGADS 267
Q L+AD R C KLE A F +Q + + K + +
Sbjct: 367 GQ-------------LQADSGR----IHCGTKLEVAYF-----DQHRAELDPEKTVMDNL 404
Query: 268 AEP--------RARRILAGLG---FS--RAMQDRATKNFSGGWRMRVSLARALYIEPT-L 313
AE R R +L L F RAM K SGG R R+ LAR L+++P+ L
Sbjct: 405 AEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMT--PVKALSGGERNRLLLAR-LFLKPSNL 461
Query: 314 LLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGN 373
L+LDEPTN LD+ + L+ L ++ T+L+VSHD+ F+DN E + ++GN
Sbjct: 462 LILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTEC--------WIFEGN 513
Query: 374 --YSMFKKMY--AQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKS 429
+ Y A++ + + ++ + K++A E + R +K
Sbjct: 514 GKIGRYVGGYHDARQQQAQYLALKQPAV---------KKKEEAAAPKAETVKRSSKKLSY 564
Query: 430 KLQK 433
KLQ+
Sbjct: 565 KLQR 568
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 97.2 bits (243), Expect = 3e-23
Identities = 64/232 (27%), Positives = 105/232 (45%), Gaps = 34/232 (14%)
Query: 148 KVENFSISAKGND--LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDI 205
+++N S S + +L I G +VGPNG GK+TLLR + L P + ++
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNG--LLGPTSGEV 58
Query: 206 LYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADF-SSEQQEQLKEIYEELKAIG 264
L +++ L + ++ L+ F + + Q + EE+ A G
Sbjct: 59 LVDGKDLTKLSLKEL-------RRKVGLV----------FQNPDDQFFGPTVEEEV-AFG 100
Query: 265 -------ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLD 317
+ E R L +G ++DR+ SGG + RV++A L ++P +LLLD
Sbjct: 101 LENLGLPEEEIEERVEEALELVGLE-GLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLD 159
Query: 318 EPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQSFLDNVCNEIIHLDQQK 366
EPT LD L L+ K KT++IV+HD L + + +I L+ K
Sbjct: 160 EPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 97.8 bits (244), Expect = 1e-22
Identities = 57/260 (21%), Positives = 98/260 (37%), Gaps = 56/260 (21%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIA------------------SRDLKVPPNIDI 205
+ + G +GL+GPNG GKTTLL+ +A KV I
Sbjct: 23 GVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRI-G 81
Query: 206 LYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA 265
++ + +LT E++ E + L +
Sbjct: 82 YVPQEPSLYPELTVRENL-------------------------------EFFARLYGLSK 110
Query: 266 DSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL 325
+ AE R +L G + + SGG + R+S+A AL +P LL+LDEPT+ LD
Sbjct: 111 EEAEERIEELLELFGLEDKANKKV-RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDP 169
Query: 326 NAVI----WLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMY 381
+ L + T+L+ +H + +C+ +I L+ K+ G K+ +
Sbjct: 170 ESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAE-GTPEELKEKF 228
Query: 382 AQKSKERMKEFEKQEKRIKE 401
K ++ + + E
Sbjct: 229 GGKGVIELEPERLELAELLE 248
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 95.4 bits (238), Expect = 3e-22
Identities = 66/231 (28%), Positives = 97/231 (41%), Gaps = 23/231 (9%)
Query: 147 IKVENFSISAKGND-LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDI 205
I+ EN S G + +L I G R L+GPNG GK+TLL+ + L P
Sbjct: 4 IEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG--LLKPT---- 57
Query: 206 LYCEQEVVADDL-TAVESVLKADVKRTELLAECAKLEAAD--FSSEQQEQLKEIYEELKA 262
EV+ D L T+ E L ++ L+ + D E E
Sbjct: 58 ---SGEVLVDGLDTSSEKSLLELRQKVGLV-----FQNPDDQLFGPTVEDEVAFGLENLG 109
Query: 263 IGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNH 322
+ + E R L +G + DR N SGG + RV++A L + P +LLLDEPT
Sbjct: 110 LPREEIEERVAEALELVGLEE-LLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAG 168
Query: 323 LDLNAVIW----LDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369
LD L + KT++IV+HD + + ++ LD K+
Sbjct: 169 LDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILA 219
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 93.3 bits (233), Expect = 5e-22
Identities = 68/227 (29%), Positives = 100/227 (44%), Gaps = 52/227 (22%)
Query: 148 KVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILY 207
+VEN S+ G + + +L I G G++GPNG GK+TLL+ +A LK P + +IL
Sbjct: 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLA-GLLK-PSSGEILL 58
Query: 208 CEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADS 267
+++ A + EL + A + A L+ +G
Sbjct: 59 DGKDL-------------ASLSPKELARKIAYVPQA----------------LELLGLAH 89
Query: 268 AEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA 327
LA DR SGG R RV LARAL EP +LLLDEPT+HLD+
Sbjct: 90 --------LA---------DRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAH 132
Query: 328 VIWLDNYLQGWK----KTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370
I L L+ KT+++V HD + + +I L ++
Sbjct: 133 QIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQ 179
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 90.7 bits (226), Expect = 3e-21
Identities = 59/225 (26%), Positives = 93/225 (41%), Gaps = 56/225 (24%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
++++N S + + +L I G L+GP+G GK+TLLR IA L+ P + I
Sbjct: 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAG--LEEPDSGSI- 57
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQL---KEIYEELKAI 263
+ E DLT +E L +R ++ F Q L + E +
Sbjct: 58 LIDGE----DLTDLEDELPPLRRRIGMV----------F---QDFALFPHLTVLENI--- 97
Query: 264 GADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHL 323
LG S GG + RV+LARAL ++P +LLLDEPT+ L
Sbjct: 98 --------------ALGLS------------GGQQQRVALARALAMDPDVLLLDEPTSAL 131
Query: 324 DLNAVIWLDNYL----QGWKKTLLIVSHDQSFLDNVCNEIIHLDQ 364
D + L T+++V+HD + + ++ L
Sbjct: 132 DPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRD 176
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 92.6 bits (230), Expect = 4e-21
Identities = 70/223 (31%), Positives = 98/223 (43%), Gaps = 17/223 (7%)
Query: 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDI 205
+++ S SA G + ++ G GL+GPNG GK+TLLR +A + P+
Sbjct: 1 GLRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAG---ALRPDAGT 57
Query: 206 LYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA 265
+ ++ DL + +A R L E A + L I
Sbjct: 58 V----DLAGVDLHGLSRRARA---RRVALVEQDSDTAVPLTVRDVVALGRI-PHRSLWAG 109
Query: 266 DSAEPRA--RRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHL 323
DS A R LA S + DR SGG R RV +ARAL EP LLLLDEPTNHL
Sbjct: 110 DSPHDAAVVDRALARTELS-HLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHL 168
Query: 324 DLNA---VIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLD 363
D+ A + L L T++ HD + + C+ ++ LD
Sbjct: 169 DVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLD 211
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 91.9 bits (229), Expect = 5e-21
Identities = 68/245 (27%), Positives = 101/245 (41%), Gaps = 52/245 (21%)
Query: 147 IKVENFSISAKGNDLFVNA----NLLIANGRRYGLVGPNGHGKTTLLR-----------H 191
+ V N SI G +A +L I G G+VG +G GK+TL R
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 192 IASRDLKVPP--NIDILYCE-QEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSE 248
I + P Y Q V D +++ V R
Sbjct: 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRT--VGRI----------------- 104
Query: 249 QQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALY 308
+ E L+ G ++ R +L +G + DR SGG R R+++ARAL
Sbjct: 105 -------LSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALI 157
Query: 309 IEPTLLLLDEPTNHLD--LNAVIWLDNYLQGWKK----TLLIVSHDQSFLDNVCNEIIHL 362
EP LL+LDEPT+ LD + A I N L KK T L +SHD + ++++C+ I +
Sbjct: 158 PEPKLLILDEPTSALDVSVQAQIL--NLLLELKKERGLTYLFISHDLALVEHMCDRIAVM 215
Query: 363 DQQKL 367
D ++
Sbjct: 216 DNGQI 220
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 86.1 bits (214), Expect = 7e-20
Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK---TLLIVSHDQ 349
SGG R RV+LARAL + P LLLLDEPT+ LD + L L+ + T++IV+HD
Sbjct: 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP 140
Query: 350 SFLDNVCNEIIHLDQQK 366
+ + +I L K
Sbjct: 141 ELAELAADRVIVLKDGK 157
Score = 54.6 bits (132), Expect = 6e-09
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 148 KVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILY 207
++EN S G N +L + G LVGPNG GK+TLLR IA L P + +IL
Sbjct: 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAG--LLKPTSGEILI 58
Query: 208 CEQEVVADDLTAV 220
+++ L +
Sbjct: 59 DGKDIAKLPLEEL 71
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 87.3 bits (217), Expect = 9e-20
Identities = 58/226 (25%), Positives = 99/226 (43%), Gaps = 27/226 (11%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
+K + + + + + +L + G YG +GPNG GKTT ++ I L P + +I
Sbjct: 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILG--LIKPDSGEIT 58
Query: 207 YCEQEVV--ADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG 264
+ + + L + ++++A L A E L+ L A
Sbjct: 59 FDGKSYQKNIEALRRIGALIEAPGFYPNLTAR--------------ENLR-----LLARL 99
Query: 265 ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
+ R +L +G + + K FS G + R+ +A AL P LL+LDEPTN LD
Sbjct: 100 LGIRKKRIDEVLDVVGL-KDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLD 158
Query: 325 LNAVIWLDNYLQGWKK---TLLIVSHDQSFLDNVCNEIIHLDQQKL 367
+ + L + + T+LI SH S + V + I +++ KL
Sbjct: 159 PDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKL 204
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 92.7 bits (231), Expect = 1e-19
Identities = 72/279 (25%), Positives = 115/279 (41%), Gaps = 49/279 (17%)
Query: 122 LGDNFTISQMEKTGGQLAALEN-AVDIKVEN--FSISAKGNDLFVNANLLIANGRRYGLV 178
LGD ++ L L +I+ EN F + + +L I G + +V
Sbjct: 446 LGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIV 505
Query: 179 GPNGHGKTTLLRHIASRDLKVPP-------NIDILYCEQEVVADDLTAV--ESVLKADVK 229
G +G GK+TLL+ + L P +D+ + + + V + L +
Sbjct: 506 GRSGSGKSTLLKLLLG--LYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSI 563
Query: 230 RTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD---SAEPRARRILAGLGFSRAMQ 286
R E +A + +EI E + GA P +G+ +
Sbjct: 564 R-ENIALGN----------PEATDEEIIEAAQLAGAHEFIENLP--------MGYDTPVG 604
Query: 287 DRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD-LNAVIWLDNYLQ-GWKKTLLI 344
+ N SGG R R++LARAL +P +LLLDE T+ LD I L N LQ +T++I
Sbjct: 605 EGGA-NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVII 663
Query: 345 VSHDQSFLDNVCNEIIHLDQ---------QKLYYYKGNY 374
++H S + + + II LDQ ++L G Y
Sbjct: 664 IAHRLSTIRS-ADRIIVLDQGKIVEQGSHEELLAQGGLY 701
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 87.6 bits (218), Expect = 2e-19
Identities = 65/246 (26%), Positives = 98/246 (39%), Gaps = 50/246 (20%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLR-------------HIA 193
++VEN S G + + + I G G++GPNG GK+TLL+ +
Sbjct: 3 LEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLD 62
Query: 194 SRDLKVPPN----IDILYCEQE-VVADDLTAVESVLKADVKRTELLAECAKLEAADFSSE 248
+D+ + Y Q LT E VL L F
Sbjct: 63 GKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGL-----------FGRP 111
Query: 249 QQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALY 308
+E + + E L+ +G E A R + L SGG R RV +ARAL
Sbjct: 112 SKEDEEIVEEALELLGL---EHLADRPVDEL--------------SGGERQRVLIARALA 154
Query: 309 IEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK----TLLIVSHDQSFLDNVCNEIIHLDQ 364
E +LLLDEPT+HLD+ I + L+ + T+++V HD + + +I L
Sbjct: 155 QETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKD 214
Query: 365 QKLYYY 370
K+
Sbjct: 215 GKIVAQ 220
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 90.4 bits (225), Expect = 4e-19
Identities = 69/275 (25%), Positives = 103/275 (37%), Gaps = 59/275 (21%)
Query: 137 QLAALENAVDIKVENFSISA-KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA-- 193
A E ++I +EN S G + NL I G+ LVG +G GK+TLL +
Sbjct: 311 AEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGF 370
Query: 194 --------------SRDLKVPPNI--DILYCEQEVVADDLTAVESVLKADVKRTELLAEC 237
RDL P I + Q T E++L A ++
Sbjct: 371 LAPTQGEIRVNGIDLRDLS-PEAWRKQISWVSQNPYLFAGTIRENILLARPDASD----- 424
Query: 238 AKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGW 297
+EI L G P+ G + + SGG
Sbjct: 425 ----------------EEIIAALDQAGLLEFVPKP------DGLDTVIGEGG-AGLSGGQ 461
Query: 298 RMRVSLARALYIEPTLLLLDEPTNHLDL-NAVIWLDNYLQGWK-KTLLIVSHDQSFLDNV 355
R++LARAL +LLLLDEPT HLD I L + K KT+L+++H +
Sbjct: 462 AQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAAD- 520
Query: 356 CNEIIHLDQQKLYYYKGNYS-------MFKKMYAQ 383
+ I+ LD +L +G + ++ + Q
Sbjct: 521 ADRIVVLDNGRL-VEQGTHEELSEKQGLYANLLKQ 554
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 84.9 bits (211), Expect = 7e-19
Identities = 60/226 (26%), Positives = 90/226 (39%), Gaps = 56/226 (24%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
++++ S + + +L + G L+GP+G GKTTLLR IA L+ P + +IL
Sbjct: 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAG--LERPDSGEIL 58
Query: 207 YCEQEV------------VADD------LTAVESVLKADVKRTELLAECAKLEAADFSSE 248
++V V D LT E++ L+
Sbjct: 59 IDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFG-------------LKLRGVPKA 105
Query: 249 QQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALY 308
+ R R +L +G + +R SGG + RV+LARAL
Sbjct: 106 EIRA------------------RVRELLELVGLEGLL-NRYPHELSGGQQQRVALARALA 146
Query: 309 IEPTLLLLDEPTNHLDLNAVIWLDNYLQG----WKKTLLIVSHDQS 350
EP+LLLLDEP + LD L L+ T + V+HDQ
Sbjct: 147 REPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE 192
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 81.4 bits (202), Expect = 1e-17
Identities = 58/243 (23%), Positives = 99/243 (40%), Gaps = 52/243 (21%)
Query: 148 KVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPP---NID 204
+VE+ ++S G+ + + + + G +VGPNG GK+TLL+ I L + P +I
Sbjct: 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAIL--GL-LKPTSGSIR 57
Query: 205 IL------------YCEQEVVAD---DLTAVESVLKADVKRTELLAECAKLEAADFSSEQ 249
+ Y Q D ++ + VL L F
Sbjct: 58 VFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGL-----------FRRLS 106
Query: 250 QEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYI 309
+ ++ E L+ +G +E R+I SGG + RV LARAL
Sbjct: 107 KADKAKVDEALERVGL--SELADRQI---------------GELSGGQQQRVLLARALVQ 149
Query: 310 EPTLLLLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQSFLDNVCNEIIHLDQQK 366
+P LLLLDEP +D + L+ + T+L+V+HD + + ++ L++
Sbjct: 150 DPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTV 209
Query: 367 LYY 369
+
Sbjct: 210 VAS 212
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 80.7 bits (200), Expect = 2e-17
Identities = 62/237 (26%), Positives = 105/237 (44%), Gaps = 42/237 (17%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
+++EN + +L + G YGL+GPNG GKTTL+R +A+ L P + I
Sbjct: 1 LQLENLTKRYGKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILAT--LTPPSSGTIR 57
Query: 207 YCEQEVVADDLTAVESVL---------KADVKRTELLAECAKLEAADFSSEQQEQLKEIY 257
Q+V+ + + + E L A L
Sbjct: 58 IDGQDVL-KQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWL----------------- 99
Query: 258 EELKAIGADSAEPRARRILAGLGFSRAMQDRATK---NFSGGWRMRVSLARALYIEPTLL 314
K I + + R +L + + DRA K + SGG R RV +A+AL +P++L
Sbjct: 100 ---KGIPSKEVKARVDEVLELVN----LGDRAKKKIGSLSGGMRRRVGIAQALVGDPSIL 152
Query: 315 LLDEPTNHLDLNAVIWLDNYLQ--GWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369
++DEPT LD I N L G + +++ +H ++++CN++ L++ KL +
Sbjct: 153 IVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVF 209
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 81.5 bits (202), Expect = 2e-17
Identities = 61/243 (25%), Positives = 100/243 (41%), Gaps = 48/243 (19%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA------------- 193
I+VEN ++S + + +L + G L+GPNG GK+TLL+ I
Sbjct: 5 IEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIF 64
Query: 194 -SRDLKVPPNIDILYCEQEVVADD---LTAVESVLKADVKRTELLAECAKLEAADFSSEQ 249
K + I Y Q+ D +T + VL + +L D
Sbjct: 65 GKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR---RLNKKDK---- 117
Query: 250 QEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYI 309
+++ E L+ +G ++DR SGG + RV LARAL
Sbjct: 118 ----EKVDEALERVGM-----------------EDLRDRQIGELSGGQKQRVLLARALAQ 156
Query: 310 EPTLLLLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQSFLDNVCNEIIHLDQQK 366
P LLLLDEP +D+ + + L+ + KT+L+V+HD + + +I L++
Sbjct: 157 NPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHL 216
Query: 367 LYY 369
+
Sbjct: 217 IAS 219
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 80.7 bits (200), Expect = 2e-17
Identities = 60/220 (27%), Positives = 93/220 (42%), Gaps = 41/220 (18%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPP-------NIDILYCEQEVVADD 216
N +L I G + ++G G GK+TLL+ +A L P DI +++ D
Sbjct: 22 NVSLTIRAGEKVAIIGRVGSGKSTLLKLLAG--LYKPTSGSVLLDGTDI----RQLDPAD 75
Query: 217 LTAVESVLKADVKRTELLA-------ECAKLEAADFSSEQQEQLKEIYEELKAIGADSAE 269
L + DV L A D + I + G
Sbjct: 76 LRRNIGYVPQDV---TLFYGTLRDNITLGAPLADD---------ERILRAAELAGVTDFV 123
Query: 270 PRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVI 329
+ G + +R + SGG R V+LARAL +P +LLLDEPT+ +D+N+
Sbjct: 124 NKHPN-----GLDLQIGERG-RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEE 177
Query: 330 WLDNYLQGWK--KTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
L L+ KTL+I++H S LD + + II +D ++
Sbjct: 178 RLKERLRQLLGDKTLIIITHRPSLLD-LVDRIIVMDSGRI 216
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 80.2 bits (198), Expect = 6e-17
Identities = 68/253 (26%), Positives = 122/253 (48%), Gaps = 20/253 (7%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
I+V+N G + +L + G ++GP+G GKTTLLR I L+ P I
Sbjct: 4 IEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINL--LEQPEAGTIR 61
Query: 207 YCEQEVVAD-DLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEE---LKA 262
+ + L+ + +++ + + + L + L+ I E +K
Sbjct: 62 VGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNL------FPHRTVLENIIEGPVIVKG 115
Query: 263 IGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNH 322
+ A RAR +LA +G + + + SGG + RV++ARAL + P ++L DEPT+
Sbjct: 116 EPKEEATARARELLAKVGLA-GKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSA 174
Query: 323 LDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKK 379
LD V + N ++ K+T++IV+H+ SF +V + I +DQ ++ +G K
Sbjct: 175 LDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRI-VEQGPA---KA 230
Query: 380 MYAQKSKERMKEF 392
++A + R ++F
Sbjct: 231 LFADPQQPRTRQF 243
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 79.1 bits (196), Expect = 1e-16
Identities = 68/225 (30%), Positives = 94/225 (41%), Gaps = 61/225 (27%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA------------S 194
+++E S S G ++ + NL + G ++GP+G GK+TLLR IA
Sbjct: 4 LEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLD 63
Query: 195 RDLKVPPNIDILYCEQEVVADDL----TAVESVLKADVKRTELLAECAKLEAADFSSEQQ 250
P DI Y QE D L T +++V L LE S +
Sbjct: 64 GRPVTGPGPDIGYVFQE---DALLPWLTVLDNVA---------LG----LELRGKSKAE- 106
Query: 251 EQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATK---NFSGGWRMRVSLARAL 307
A RA+ +L +G + K SGG R RV++ARAL
Sbjct: 107 -----------------ARERAKELLELVG----LAGFEDKYPHQLSGGMRQRVAIARAL 145
Query: 308 YIEPTLLLLDEPTNHLD-LNAVIWLDNYLQGW---KKTLLIVSHD 348
P LLLLDEP LD L D L+ W +KT+L+V+HD
Sbjct: 146 ATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHD 190
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 78.2 bits (193), Expect = 2e-16
Identities = 56/225 (24%), Positives = 90/225 (40%), Gaps = 60/225 (26%)
Query: 169 IANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADV 228
+ G GL+GPNG GKTT LR +A +L+ D
Sbjct: 28 VKPGEVTGLLGPNGAGKTTTLRMLAG----------------------------LLEPDA 59
Query: 229 KRTELLAECAKLEAADFSSEQQEQLKEI---------YEELKA------------IGADS 267
A ++ D E E + + Y+ L A + D
Sbjct: 60 GF-------ATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDE 112
Query: 268 AEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA 327
R + LG + DR FS G R +V++ARAL +P +LLLDEPT LD+ A
Sbjct: 113 LTARLEELADRLGM-EELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMA 171
Query: 328 VIWLDNYLQGWK---KTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369
L +++ + K +L +H ++ +C+ ++ L + ++ Y
Sbjct: 172 TRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY 216
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 81.6 bits (202), Expect = 3e-16
Identities = 69/254 (27%), Positives = 108/254 (42%), Gaps = 35/254 (13%)
Query: 145 VDIKVENFSISAKGNDLFV--NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN 202
+++ N S + G N NL +A G + ++G +G GK+TLL + + P
Sbjct: 335 QALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLL-QLLAGAWD-PQQ 392
Query: 203 IDILYCEQEVVADDLTAVESVLKADVKRTEL----LAECAKLEAADFSSEQQEQLKEIYE 258
I E+ + D A+ + +R L L + +L D S E E++
Sbjct: 393 GSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDE------ELWA 446
Query: 259 ELKAIG-ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLD 317
L+ +G E + LG + SGG R R++LARAL + L LLD
Sbjct: 447 ALQQVGLEKLLESAPDGLNTWLG-------EGGRRLSGGERRRLALARALLHDAPLWLLD 499
Query: 318 EPTNHLD----LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG- 372
EPT LD + L + +G KTLL+V+H L+ + II LD K+
Sbjct: 500 EPTEGLDPITERQVLALLFEHAEG--KTLLMVTHRLRGLE-RMDRIIVLDNGKIIEEGTH 556
Query: 373 -----NYSMFKKMY 381
N +K++Y
Sbjct: 557 AELLANNGRYKRLY 570
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 79.4 bits (196), Expect = 3e-16
Identities = 60/239 (25%), Positives = 99/239 (41%), Gaps = 34/239 (14%)
Query: 163 VNANLLIANGRRYGLVGPNGHGKTTLLR-----HIASRDLKVPPNIDILYCEQEVVADDL 217
+ + I G G +G NG GK+T L+ + + KV N + +E +
Sbjct: 41 QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT-SGKVRVNGKDPFRRREEYLRSI 99
Query: 218 TAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILA 277
V + +L + L+ E LK IYE I D R +
Sbjct: 100 GLVMGQ------KLQLWWDLPALD--SL-----EVLKLIYE----IPDDEFAERLDFLTE 142
Query: 278 GLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG 337
L ++ K S G RMR LA AL P +L LDEPT LD+NA + +L+
Sbjct: 143 ILDLEGFLKWPVRK-LSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKE 201
Query: 338 WKK----TLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEF 392
+ + T+L+ +H + +C+ ++ +DQ +L + G + ++ + KEF
Sbjct: 202 YNEERQATVLLTTHIFDDIATLCDRVLLIDQGQL-VFDGTLAQLQEQFG-----PYKEF 254
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 75.1 bits (186), Expect = 7e-16
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQ 349
SGG + R++LA+AL +P LL+LDEPT+ LD + L+ K KT+L+ SH
Sbjct: 96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL 155
Query: 350 SFLDNVCNEIIHLDQQKL 367
+ +C+ + L+ ++
Sbjct: 156 EEAERLCDRVAILNNGRI 173
Score = 48.5 bits (117), Expect = 1e-06
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA 193
I+V N S + +L + G YGL+GPNG GKTTL++ I
Sbjct: 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIIL 47
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 76.4 bits (189), Expect = 1e-15
Identities = 65/231 (28%), Positives = 104/231 (45%), Gaps = 26/231 (11%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
I++ + S G + +L + G ++GP+G GK+TLLR I L P + ++L
Sbjct: 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVG--LLRPDSGEVL 58
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEE----LKA 262
+++ L+ E L +R +L + L F S ++E L+
Sbjct: 59 IDGEDI--SGLSEAE--LYRLRRRMGMLFQSGAL----FDS------LTVFENVAFPLRE 104
Query: 263 IGADSAEPRARRILAGLGFS--RAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPT 320
S E +L L R +D SGG + RV+LARAL ++P LLL DEPT
Sbjct: 105 HTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPT 164
Query: 321 NHLDLNAVIWLDNYLQGWKKTL----LIVSHDQSFLDNVCNEIIHLDQQKL 367
LD A +D+ ++ KK L ++V+HD + + I L K+
Sbjct: 165 AGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKI 215
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 75.9 bits (187), Expect = 2e-15
Identities = 57/207 (27%), Positives = 94/207 (45%), Gaps = 24/207 (11%)
Query: 169 IANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADV 228
G GL+G NG GKTTLLR IA+ L +P +V D + V
Sbjct: 25 AEEGEITGLLGENGAGKTTLLRMIAT--LLIPD-------SGKVTIDGVDTVRDPSFVRR 75
Query: 229 KRTELLAEC---AKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAM 285
K L E A+L A +E LK + L + + R + L +
Sbjct: 76 KIGVLFGERGLYARLTA-------RENLK-YFARLNGLSRKEIKARIAELSKRLQLLEYL 127
Query: 286 QDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK---KTL 342
DR FS G + +V++ARAL +P++L+LDEPT+ LD+ ++++ K + +
Sbjct: 128 -DRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAV 186
Query: 343 LIVSHDQSFLDNVCNEIIHLDQQKLYY 369
+ SH ++ +C+ +I L + ++
Sbjct: 187 IFSSHIMQEVEALCDRVIVLHKGEVVL 213
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 75.6 bits (187), Expect = 2e-15
Identities = 56/225 (24%), Positives = 99/225 (44%), Gaps = 48/225 (21%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV----------- 212
+ + + G +GL+GPNG GKTTL ++ S L+ P + +L+ +++
Sbjct: 18 DVSFSVRPGEIHGLIGPNGAGKTTLF-NLISGFLR-PTSGSVLFDGEDITGLPPHEIARL 75
Query: 213 ----------VADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA 262
+ +LT +E+V+ +A A+ + + + + +E E
Sbjct: 76 GIGRTFQIPRLFPELTVLENVM---------VAAQARTGSGLLLARARREEREARE---- 122
Query: 263 IGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPT-- 320
RA +L +G + DR S G + R+ +ARAL +P LLLLDEP
Sbjct: 123 --------RAEELLERVGLADLA-DRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAG 173
Query: 321 -NHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQ 364
N + + L L+ T+L+V HD + ++ + + LDQ
Sbjct: 174 LNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQ 218
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 75.2 bits (186), Expect = 2e-15
Identities = 60/239 (25%), Positives = 95/239 (39%), Gaps = 48/239 (20%)
Query: 147 IKVENFSISAKGNDLFVNA----NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN 202
++V+N S+S V A + I G GLVG +G GK+TL R I L P +
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAIL--GLLKPTS 59
Query: 203 IDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQ------------ 250
I++ +++ +L K+ + Q
Sbjct: 60 GSIIFDGKDL------------------LKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTI 101
Query: 251 -EQLKEIYEELKAIGADSAEPRARR-ILAGLGFSRAMQDRATKNFSGGWRMRVSLARALY 308
EQ+ E + A A +L G+G + +R SGG R RV++ARAL
Sbjct: 102 GEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALA 161
Query: 309 IEPTLLLLDEPTNHLD-------LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEII 360
+ P LL+ DEPT+ LD L+ L + TLL ++HD + + + +
Sbjct: 162 LNPKLLIADEPTSALDVSVQAQILDL---LKKLQEELGLTLLFITHDLGVVAKIADRVA 217
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 75.8 bits (187), Expect = 2e-15
Identities = 59/268 (22%), Positives = 95/268 (35%), Gaps = 73/268 (27%)
Query: 116 GQGHSELGDNFTISQMEKTGGQLAALENAVDIKVENFSISAKGNDLFVNANLLIANGRRY 175
HSE + + ++ + N I+++N S+ G + + + + G +
Sbjct: 1 QLAHSESSRGVELPEPKEPKKRHPIEINEPLIELKNVSVRRNGKKILGDLSWQVNPGEHW 60
Query: 176 GLVGPNGHGKTTLLRHIA----------------------SRDLK-----VPPNIDILYC 208
+VGPNG GKTTLL + +L+ V + +
Sbjct: 61 AIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFR 120
Query: 209 EQ----EVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG 264
+ +VV A + + D+ +L + L L+ +G
Sbjct: 121 VRETVRDVVLSGFFASIGIYQEDLTAEDL--------------AAAQWL------LELLG 160
Query: 265 ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
A DR + S G + RV +ARAL +P LL+LDEP LD
Sbjct: 161 AKHLA-----------------DRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLD 203
Query: 325 LNAVIWLDNYLQGW-----KKTLLIVSH 347
L A L N L+ LL V+H
Sbjct: 204 LIAREQLLNRLEELAASPGAPALLFVTH 231
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 74.7 bits (184), Expect = 3e-15
Identities = 58/242 (23%), Positives = 97/242 (40%), Gaps = 53/242 (21%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLR-------------HIA 193
I+VEN + + + G +GL+GPNG GKTT ++ +A
Sbjct: 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVA 60
Query: 194 SRD-LKVPPNI--DILYCEQEVVADD-LTAVESVLKADVKRTELLAECAKLEAADFSSEQ 249
D ++ P + I Q++ DD LT E++
Sbjct: 61 GHDVVREPREVRRRIGIVFQDLSVDDELTGWENL-------------------------- 94
Query: 250 QEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYI 309
I+ L + R +L +G A DR K +SGG R R+ +AR+L
Sbjct: 95 -----YIHARLYGVPGAERRERIDELLDFVGLLEA-ADRLVKTYSGGMRRRLEIARSLVH 148
Query: 310 EPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK----TLLIVSHDQSFLDNVCNEIIHLDQQ 365
P +L LDEPT LD + Y++ K+ T+L+ +H + +C+ + +D
Sbjct: 149 RPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHG 208
Query: 366 KL 367
++
Sbjct: 209 RI 210
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 74.5 bits (184), Expect = 4e-15
Identities = 62/239 (25%), Positives = 99/239 (41%), Gaps = 36/239 (15%)
Query: 147 IKVENFSISAKGNDLFVNA----NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN 202
I+++N S V A NL I G +VGP+G GK+TLL ++ K
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLL-NLLGGLDKPTSG 60
Query: 203 IDILYCEQEVVADDLTAVESVLKADVKRTE---------LLAECAKLEAADFSSEQQEQL 253
+L + DLT + A ++R + LL D + + +L
Sbjct: 61 E-VLINGK-----DLTKLSEKELAKLRRKKIGFVFQNFNLLP--------DLTVLENVEL 106
Query: 254 KEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTL 313
+ A + A +L LG + + SGG + RV++ARAL P +
Sbjct: 107 PLLI---AGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKI 163
Query: 314 LLLDEPTNHLDL---NAVI-WLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLY 368
+L DEPT +LD V+ L + KT+++V+HD L + +I L K+
Sbjct: 164 ILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHD-PELAKYADRVIELKDGKIE 221
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 77.7 bits (192), Expect = 4e-15
Identities = 62/234 (26%), Positives = 92/234 (39%), Gaps = 44/234 (18%)
Query: 147 IKVENFSISAKGNDLFV-NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDI 205
++ S++ G + + + G R LVGP+G GK+TLL + V P
Sbjct: 322 LEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGF---VDPT--- 375
Query: 206 LYCEQEVVADDLTAVESVLKADVKRTEL-------------LAECAKLEAADFSSEQQEQ 252
E + + + + AD R ++ +AE +L D S
Sbjct: 376 ---EGSIAVNGVPLAD--ADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDA---- 426
Query: 253 LKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPT 312
EI E L+ G D GL SGG R++LARA +
Sbjct: 427 --EIREALERAGLDEFVAALP---QGLDT---PIGEGGAGLSGGQAQRLALARAFLRDAP 478
Query: 313 LLLLDEPTNHLD--LNAVIW--LDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHL 362
LLLLDEPT HLD A + L QG +T+L+V+H + + I+ L
Sbjct: 479 LLLLDEPTAHLDAETEAEVLEALRALAQG--RTVLLVTHRLALAAL-ADRIVVL 529
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 74.5 bits (184), Expect = 5e-15
Identities = 52/229 (22%), Positives = 92/229 (40%), Gaps = 53/229 (23%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV----------- 212
+ +L + G GL+GPNG GKTTL ++ + K P + +++ +++
Sbjct: 22 DVSLEVRPGEIVGLIGPNGAGKTTL-FNLITGFYK-PSSGTVIFRGRDITGLPPHRIARL 79
Query: 213 ----------VADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA 262
+ LT +E+V R L +++ +E E
Sbjct: 80 GIARTFQITRLFPGLTVLENVAVGAHARL-------GLSGLLGRPRARKEEREARE---- 128
Query: 263 IGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPT-- 320
RAR +L +G A N S G + R+ +ARAL +P LLLLDEP
Sbjct: 129 --------RARELLEFVGLGELADRPA-GNLSYGQQRRLEIARALATQPKLLLLDEPAAG 179
Query: 321 -NHLDLNAVIWLDNYLQGWKK----TLLIVSHDQSFLDNVCNEIIHLDQ 364
N + + ++ + T+L++ HD + + + I+ L+
Sbjct: 180 LNPEETEELA---ELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNY 225
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 77.2 bits (191), Expect = 6e-15
Identities = 54/206 (26%), Positives = 86/206 (41%), Gaps = 26/206 (12%)
Query: 166 NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225
+ + G GLVG +G GK+TL R +A +PP+ + DL L+
Sbjct: 311 SFDLREGETLGLVGESGSGKSTLARILAGL---LPPSSGSI----IFDGQDLDLTGGELR 363
Query: 226 ADVKRTELLAECAKLEAADFS----SEQQEQLKEIYEELKAIGADSAEPRARRILAGLGF 281
+R +++ + S + L E R +L +G
Sbjct: 364 RLRRRIQMV-----FQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGL 418
Query: 282 SRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD---LNAVIWLDNYLQGW 338
DR SGG R RV++ARAL +EP LL+LDEP + LD V+ N L+
Sbjct: 419 PPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVL---NLLKDL 475
Query: 339 KK----TLLIVSHDQSFLDNVCNEII 360
++ T L +SHD + + + + +
Sbjct: 476 QEELGLTYLFISHDLAVVRYIADRVA 501
Score = 75.7 bits (187), Expect = 2e-14
Identities = 73/363 (20%), Positives = 127/363 (34%), Gaps = 85/363 (23%)
Query: 147 IKVENFSISAKGNDLFVNA----NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN 202
++VEN ++ + V A + + G G+VG +G GK+TL L
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLAL-ALMGLLPEGGR 64
Query: 203 ID---ILYCEQEVVADDLTAVESVLKADV-----KRTELLAECAKLEAADFSSEQQEQLK 254
I ++ ++++ + + + L + +Q++
Sbjct: 65 ITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIG---------DQIR 115
Query: 255 EIYEELKAIGADSAEPRARRILAGLGFS-RAMQDRATKNFSGGWRMRVSLARALYIEPTL 313
E A RA +L +G +DR SGG R RV +A AL ++P L
Sbjct: 116 EALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKL 175
Query: 314 LLLDEPTNHLD-------LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQK 366
L+ DEPT LD L+ L + + +L ++HD + + + ++ +
Sbjct: 176 LIADEPTTALDVTTQAQILDL---LKDLQRELGMAVLFITHDLGVVAELADRVVVM---- 228
Query: 367 LYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEK 426
YKG I E G T+E+L+ Q
Sbjct: 229 ---YKG-------------------------EIVE---TGP--------TEEILSNPQHP 249
Query: 427 NKSKLQKADEDQGPTELIQKPREYVVKFSFPDPPPLQPPILGLHNVTFAYEGMKPLLMSK 486
L A G ++I+ PR P P+L + N++ Y K L + +
Sbjct: 250 YTRGLLAAVPRLGDEKIIRLPRRG---------PLRAEPLLSVRNLSKRYGSRKGLFVRE 300
Query: 487 ADE 489
E
Sbjct: 301 RGE 303
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 74.2 bits (183), Expect = 8e-15
Identities = 65/281 (23%), Positives = 107/281 (38%), Gaps = 66/281 (23%)
Query: 147 IKVENFSIS-AKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI-D 204
I+V+N S + G+ + NL I G ++GP+G GK+TLLR + V P +
Sbjct: 4 IEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGL---VDPTSGE 60
Query: 205 ILYCEQEVVA-----------------------DDLTAVESVLKADVKRTELLAECAKLE 241
IL+ ++ L+ +E+VL + T L
Sbjct: 61 ILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGL- 119
Query: 242 AADFSSEQQEQLKEIYEELKAIG-ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300
FS E + Q + L+ +G D A RA SGG + R
Sbjct: 120 ---FSKEDKAQ---ALDALERVGILDKAYQRA------------------STLSGGQQQR 155
Query: 301 VSLARALYIEPTLLLLDEPTNHLD-LNAVIWLD-----NYLQGWKKTLLIVSHDQSFLDN 354
V++ARAL +P ++L DEP LD +A +D N G T+++ H
Sbjct: 156 VAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDG--ITVIVNLHQVDLAKK 213
Query: 355 VCNEIIHLDQQKLYYY----KGNYSMFKKMYAQKSKERMKE 391
+ II L ++ + + ++Y + E +
Sbjct: 214 YADRIIGLKAGRIVFDGPASELTDEALDEIYGNEISEDINR 254
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 73.1 bits (180), Expect = 9e-15
Identities = 60/219 (27%), Positives = 100/219 (45%), Gaps = 24/219 (10%)
Query: 149 VENFSIS-AKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILY 207
+EN S S KG ++ + +L + G L G NG GKTTL + +A L + IL
Sbjct: 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAG--LIKESSGSILL 59
Query: 208 CEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADS 267
+ + A + + DV +L + + E + LK + A +
Sbjct: 60 NGKPIKAKERRKSIGYVMQDV-DYQLFTDSVREE--------------LLLGLKELDAGN 104
Query: 268 AEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD--- 324
+A +L L A+++R + SGG + R+++A AL LL+ DEPT+ LD
Sbjct: 105 E--QAETVLKDLDLY-ALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKN 161
Query: 325 LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLD 363
+ V L L K +++++HD FL VC+ ++ L
Sbjct: 162 MERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLA 200
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 76.6 bits (189), Expect = 9e-15
Identities = 59/233 (25%), Positives = 98/233 (42%), Gaps = 47/233 (20%)
Query: 136 GQLAALENAVDIKVENFSISAKGNDLFVNA-NLLIANGRRYGLVGPNGHGKTTLLRHIAS 194
A +++ + S G ++ +L + G R ++GP+G GK+TLL +A
Sbjct: 324 AAGAVGLGKPTLELRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLA- 382
Query: 195 RDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLK 254
L P + EV D + +R + A+ A L F + +E L+
Sbjct: 383 GLL--DPL------QGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHL----FDTTVRENLR 430
Query: 255 ---------EIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305
E++ L+ +G R + GL + + + SGG R R++LAR
Sbjct: 431 LARPDATDEELWAALERVGL---ADWLRALPDGLDTV--LGEGGAR-LSGGERQRLALAR 484
Query: 306 ALYIEPTLLLLDEPTNHLD----------LNAVIWLDNYLQGWKKTLLIVSHD 348
AL + +LLLDEPT HLD L A L G +T+++++H
Sbjct: 485 ALLADAPILLLDEPTEHLDAETADELLEDLLAA------LSG--RTVVLITHH 529
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 73.3 bits (181), Expect = 1e-14
Identities = 65/245 (26%), Positives = 104/245 (42%), Gaps = 63/245 (25%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLR-----------HIASR 195
I+++N S S ++ +L + G ++GP+G GK+TLLR I
Sbjct: 3 IEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVD 62
Query: 196 DLKVPPNIDILYCEQEV--VADD------LTAVESVLKADVKRTELLAECAKLEAADFSS 247
V DIL ++V V LT +E+V A VK
Sbjct: 63 GEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK------------------ 104
Query: 248 EQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATK---NFSGGWRMRVSLA 304
+K + A +A +L +G + D+A SGG + RV++A
Sbjct: 105 ------------VKKLSKAEAREKALELLEKVG----LADKADAYPAQLSGGQQQRVAIA 148
Query: 305 RALYIEPTLLLLDEPTNHLDLNAV-----IWLDNYLQGWKKTLLIVSHDQSFLDNVCNEI 359
RAL ++P ++L DEPT+ LD V + D +G T++IV+H+ F V + +
Sbjct: 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGM--TMIIVTHEMGFAREVADRV 206
Query: 360 IHLDQ 364
I +DQ
Sbjct: 207 IFMDQ 211
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 72.5 bits (179), Expect = 1e-14
Identities = 60/243 (24%), Positives = 99/243 (40%), Gaps = 47/243 (19%)
Query: 147 IKVENFSISAKGNDLFV----NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN 202
I+++N S + G V +L I G +VGP+G GK+TLL + D P +
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD--RPTS 58
Query: 203 IDILYCEQEVVADDLTAVESVLKADVKRTE---------LLAECAKLEAADFSSEQQEQL 253
++ ++ A +R LL D ++ + +L
Sbjct: 59 GEVRVDGTDISKLSEKE-----LAAFRRRHIGFVFQSFNLLP--------DLTALENVEL 105
Query: 254 KEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKN---FSGGWRMRVSLARALYIE 310
+ L + RA +L +G + DR SGG + RV++ARAL +
Sbjct: 106 PLL---LAGVPKKERRERAEELLERVG----LGDRLNHYPSELSGGQQQRVAIARALAND 158
Query: 311 PTLLLLDEPTNHLDL-NAVIWLD-----NYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQ 364
P ++L DEPT +LD ++ N G T+++V+HD L + II L
Sbjct: 159 PKIILADEPTGNLDSETGKEVMELLRELNKEAG--TTIVVVTHDPE-LAEYADRIIELRD 215
Query: 365 QKL 367
K+
Sbjct: 216 GKI 218
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 74.9 bits (184), Expect = 2e-14
Identities = 64/220 (29%), Positives = 90/220 (40%), Gaps = 15/220 (6%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
I V + S+ + +L + G GLVGPNG GKTTLLR A P +L
Sbjct: 4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLR--AINGTLTPTAGTVL 61
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD 266
+V A A + + + T L + +F Q ++ +
Sbjct: 62 VAGDDVEALSARAASRRVASVPQDTSL--------SFEFDVRQVVEMGRTPHRSRFDTWT 113
Query: 267 SAEPRA-RRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL 325
+ A R + G + DR + SGG R RV LARAL +LLLDEPT LD+
Sbjct: 114 ETDRAAVERAMERTGVA-QFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDI 172
Query: 326 NAVIW---LDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHL 362
N + L L KT + HD C+E++ L
Sbjct: 173 NHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLL 212
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 68.9 bits (169), Expect = 3e-14
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 245 FSSEQQEQLKEIYEELK-AIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303
F Q + E L + A+ RA L +G + SGG + RV++
Sbjct: 42 FQDPQLFPELTVRENLFFGLRDKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAI 101
Query: 304 ARALYIEPTLLLLDEPTN 321
ARAL +P LLLLDEPT
Sbjct: 102 ARALLKKPKLLLLDEPTA 119
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 71.4 bits (176), Expect = 4e-14
Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 35/218 (16%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA---SRDLKVPPNI 203
I++ + ++ + +L I G L+GP+G GK+TLLR + P
Sbjct: 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEG 60
Query: 204 DILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQL--KEIYEELK 261
++L +++ D+ +E ++R + F Q+ IY+ +
Sbjct: 61 EVLLDGKDIYDLDVDVLE------LRRRVGMV---------F---QKPNPFPGSIYDNV- 101
Query: 262 AIG--------ADSAEPRARRILAGLGFSRAMQDRAT-KNFSGGWRMRVSLARALYIEPT 312
A G + + R L ++DR SGG + R+ LARAL EP
Sbjct: 102 AYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPE 161
Query: 313 LLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHD 348
+LLLDEPT+ LD + ++ + KK T++IV+H+
Sbjct: 162 VLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHN 199
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 70.3 bits (173), Expect = 8e-14
Identities = 59/246 (23%), Positives = 102/246 (41%), Gaps = 64/246 (26%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
I+++N S + +L + G ++GP+G GK+TLLR I L+ P + I+
Sbjct: 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCIN--LLEEPDSGTII 58
Query: 207 YCEQEVVADD----------------------LTAVESVLKADVKRTELLAECAKLEAAD 244
++ D LT +E++ A +K
Sbjct: 59 IDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIK--------------- 103
Query: 245 FSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATK---NFSGGWRMRV 301
+K + AE RA +L +G + D+A SGG + RV
Sbjct: 104 ---------------VKGMSKAEAEERALELLEKVG----LADKADAYPAQLSGGQQQRV 144
Query: 302 SLARALYIEPTLLLLDEPTNHLD---LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNE 358
++ARAL + P ++L DEPT+ LD + V+ + L T+++V+H+ F V +
Sbjct: 145 AIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADR 204
Query: 359 IIHLDQ 364
+I +D
Sbjct: 205 VIFMDD 210
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 70.8 bits (174), Expect = 9e-14
Identities = 53/170 (31%), Positives = 72/170 (42%), Gaps = 31/170 (18%)
Query: 166 NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225
+ + GR L+GPNG GK+TL + +R L V I SV
Sbjct: 21 SFTVRPGRFVALLGPNGAGKSTLFS-LLTR-LYVAQEGQI----------------SVAG 62
Query: 226 ADVKRTELLAECAKLEAA--------DFSSEQQEQLKEIYEELKAIGADSAEPRARRILA 277
D++R A A+L D S Q + + L + A R +LA
Sbjct: 63 HDLRRAPRAA-LARLGVVFQQPTLDLDLSVRQNLRY---HAALHGLSRAEARARIAELLA 118
Query: 278 GLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA 327
LG + D+ + +GG R RV +ARAL P LLLLDEPT LD +
Sbjct: 119 RLGLAERADDKV-RELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPAS 167
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 70.0 bits (172), Expect = 9e-14
Identities = 63/207 (30%), Positives = 90/207 (43%), Gaps = 40/207 (19%)
Query: 170 ANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADV- 228
N G+ G +G GK+TLLR IA L+ P +V + +S K ++
Sbjct: 21 LNEEVTGIFGASGAGKSTLLRCIAG--LEKPDG-------GTIVLNGTVLFDSRKKINLP 71
Query: 229 ---KRTELLAECAKLEAADFSSEQQEQL---KEIYEELKAIGADSAEPRARRI-----LA 277
++ L+ F QQ L + E L A G R RI L
Sbjct: 72 PQQRKIGLV----------F---QQYALFPHLNVRENL-AFGLKRKRNREDRISVDELLD 117
Query: 278 GLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG 337
LG + +R SGG + RV+LARAL +P LLLLDEP + LD + L L+
Sbjct: 118 LLGLDH-LLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQ 176
Query: 338 WKKTL----LIVSHDQSFLDNVCNEII 360
KK L + V+HD S + + + I+
Sbjct: 177 IKKNLNIPVIFVTHDLSEAEYLADRIV 203
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 70.2 bits (173), Expect = 1e-13
Identities = 67/229 (29%), Positives = 95/229 (41%), Gaps = 65/229 (28%)
Query: 147 IKVENFSISAKGNDLFVNA----NLLIANGRRYGLVGPNGHGKTTLLRHIA--------- 193
++V N S + G V A +L + G LVGP+G GK+TLLR IA
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 194 -SRDLK--VPPNIDILYCEQEVVADD-----LTAVESVLKADVKRTELLAECAKLEAADF 245
D + P D Y Q D LT +++V L E + A+
Sbjct: 61 VLVDGEPVTGPGPDRGYVFQ----QDALLPWLTVLDNVA--------LGLELQGVPKAE- 107
Query: 246 SSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305
A RA +L +G S ++ SGG R RV+LAR
Sbjct: 108 ----------------------ARERAEELLELVGLSGF-ENAYPHQLSGGMRQRVALAR 144
Query: 306 ALYIEPTLLLLDEPTNHLDLNAVI------WLDNYLQGWKKTLLIVSHD 348
AL ++P +LLLDEP + LD A+ L + + KT+L+V+HD
Sbjct: 145 ALAVDPDVLLLDEPFSALD--ALTREQLQEELLDIWRETGKTVLLVTHD 191
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 70.0 bits (171), Expect = 2e-13
Identities = 69/221 (31%), Positives = 108/221 (48%), Gaps = 22/221 (9%)
Query: 157 KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV--VA 214
KG L NA +I+ ++G +G GK+T LR I L+ P I+ Q + V
Sbjct: 22 KGVSLQANAGDVIS------IIGSSGSGKSTFLRCINF--LEKPSEGSIVVNGQTINLVR 73
Query: 215 DDLTAVESVLK-ADVKRTELLAECAKLEAADFSS-EQQEQLKEIYEE-LKAIGADSAEPR 271
D + LK AD + LL + F+ L+ + E ++ +G E R
Sbjct: 74 DK----DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEAR 129
Query: 272 ARRI--LAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD---LN 326
R + LA +G Q + + SGG + RVS+ARAL +EP +LL DEPT+ LD +
Sbjct: 130 ERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVG 189
Query: 327 AVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
V+ + L KT+++V+H+ F +V + +I L Q K+
Sbjct: 190 EVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 67.8 bits (167), Expect = 3e-13
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 7/78 (8%)
Query: 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLD--LNAVIW--LDNYLQGWKKTLLIVSHD 348
SGG R R+++ARAL +P +L+LDE T+ LD A+I L +G KT+++++H
Sbjct: 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKG--KTVIVIAHR 154
Query: 349 QSFLDNVCNEIIHLDQQK 366
S + + + II LD +
Sbjct: 155 LSTIRD-ADRIIVLDDGR 171
Score = 42.8 bits (102), Expect = 9e-05
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 147 IKVEN--FSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLR 190
I+ +N FS + + + +L I G + +VGP+G GK+TLL+
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLK 46
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 72.2 bits (178), Expect = 3e-13
Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQ 349
+ SGG R V+LARAL +P +LLLDEPT+ +D + + L+ W KTL++V+H
Sbjct: 601 SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRT 660
Query: 350 SFLDNVCNEIIHLDQQKL 367
S LD + + II +D ++
Sbjct: 661 SLLD-LVDRIIVMDNGRI 677
Score = 35.2 bits (82), Expect = 0.082
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIA 193
N +L I G + ++G G GK+TLL+ +
Sbjct: 483 NVSLTIRPGEKVAIIGRIGSGKSTLLKLLL 512
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 69.3 bits (170), Expect = 6e-13
Identities = 60/223 (26%), Positives = 90/223 (40%), Gaps = 54/223 (24%)
Query: 166 NLLIANGRRYGLVGPNGHGKTTLLR-------------HIASRDL-----KVPPNIDILY 207
N + G +G +GPNG GKTT +R +A D+ KV +I I+
Sbjct: 13 NFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVP 72
Query: 208 CEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADS 267
+ V +DLT E++ E+ L + D
Sbjct: 73 -QYASVDEDLTGRENL-------------------------------EMMGRLYGLPKDE 100
Query: 268 AEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD--L 325
AE RA +L A DR +SGG R R+ +A +L +P +L LDEPT LD
Sbjct: 101 AEERAEELLELFELGEA-ADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRT 159
Query: 326 NAVIW-LDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
IW L+ T+L+ +H D +C+ I +D ++
Sbjct: 160 RRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRI 202
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 68.3 bits (167), Expect = 7e-13
Identities = 65/233 (27%), Positives = 95/233 (40%), Gaps = 36/233 (15%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
I++ N S + NL + G L+GP+G GK+TLLR IA L+ P + I
Sbjct: 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAG--LEQPDSGRIR 58
Query: 207 YCEQEVVADDLTAVESVLKADVKRTEL------LAECAKLEAADFSSEQQEQLKEIYEEL 260
Q+ + + ++ A L D + E K ++
Sbjct: 59 LNGQDAT-----------RVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKI 107
Query: 261 KAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPT 320
KA R +L + + DR SGG R RV+LARAL +EP +LLLDEP
Sbjct: 108 KA--------RVEELLELVQLEG-LGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPF 158
Query: 321 NHLD------LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
LD L + WL T + V+HDQ V + I+ + K+
Sbjct: 159 GALDAKVRKELRS--WLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKI 209
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 68.1 bits (167), Expect = 7e-13
Identities = 62/253 (24%), Positives = 97/253 (38%), Gaps = 54/253 (21%)
Query: 147 IKVENFSISAKGNDLFV-NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDI 205
++VEN S + N NL I G ++GP+G GK+TLLR I +R L P + I
Sbjct: 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCI-NR-LVEPSSGSI 59
Query: 206 LYCEQEVVA-----------------------DDLTAVESVLKADVKRTELLAECAKLEA 242
L ++ + LT +E+VL +
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGR-- 117
Query: 243 ADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302
FS E +E+ E + LA + RA SGG + RV+
Sbjct: 118 --FSEEDKERALSALERVG--------------LADKAYQRA------DQLSGGQQQRVA 155
Query: 303 LARALYIEPTLLLLDEPTNHLD-LNAVIWLDNYLQGWKK---TLLIVSHDQSFLDNVCNE 358
+ARAL +P L+L DEP LD + +D + K+ T++I H +
Sbjct: 156 IARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADR 215
Query: 359 IIHLDQQKLYYYK 371
I+ L ++ +
Sbjct: 216 IVGLKAGEIVFDG 228
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 69.6 bits (171), Expect = 7e-13
Identities = 60/219 (27%), Positives = 103/219 (47%), Gaps = 37/219 (16%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
+ +L I G +G++G +G GK+TLLR I + L+ P + + Q++ A L+ E
Sbjct: 24 DVSLEIPKGEIFGIIGYSGAGKSTLLRLI-NL-LERPTSGSVFVDGQDLTA--LSEAE-- 77
Query: 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEE----LKAIGADSAEPRARRI---- 275
L+ ++ ++ + L SS + ++E L+ G AE + R
Sbjct: 78 LRQLRQKIGMIFQHFNL----LSS------RTVFENVAFPLELAGVPKAEIKQRVAELLE 127
Query: 276 LAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYL 335
L GL DR SGG + RV++ARAL P +LL DE T+ LD + L
Sbjct: 128 LVGLS---DKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETT---QSIL 181
Query: 336 QGWKK-------TLLIVSHDQSFLDNVCNEIIHLDQQKL 367
+ K T+++++H+ + +C+ + LDQ +L
Sbjct: 182 ELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRL 220
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 67.3 bits (165), Expect = 8e-13
Identities = 61/205 (29%), Positives = 84/205 (40%), Gaps = 50/205 (24%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
+ NL IA+G L+GP+G GKTT LR IA L+ P + I Y V D
Sbjct: 18 DLNLDIADGEFVVLLGPSGCGKTTTLRMIAG--LEEPTSGRI-YIGGRDVTD-------- 66
Query: 224 LKADVKRTELLAECAKLEAAD------FSSEQQEQL---KEIYE------ELKAIGADSA 268
L D F Q L +Y+ +L+ + D
Sbjct: 67 ----------------LPPKDRDIAMVF---QNYALYPHMTVYDNIAFGLKLRKVPKDEI 107
Query: 269 EPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD---- 324
+ R R + L + DR K SGG R RV+L RA+ EP + L+DEP ++LD
Sbjct: 108 DERVREVAELLQIEHLL-DRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLR 166
Query: 325 LNAVIWLDNYLQGWKKTLLIVSHDQ 349
+ L Q T + V+HDQ
Sbjct: 167 VQMRAELKRLQQRLGTTTIYVTHDQ 191
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 66.0 bits (161), Expect = 4e-12
Identities = 62/200 (31%), Positives = 95/200 (47%), Gaps = 28/200 (14%)
Query: 160 DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTA 219
D+ N + I G +VG +G GK+TLL + D P + D+++ Q ++
Sbjct: 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD--TPTSGDVIFNGQP-----MSK 75
Query: 220 VESVLKADVKRTEL--LAECAKLEAADFSSEQQEQLKEIYEELKAIGA---DSAEPRARR 274
+ S KA+++ +L + + L DF++ L+ + L IG RA
Sbjct: 76 LSSAAKAELRNQKLGFIYQFHHL-LPDFTA-----LENVAMPL-LIGKKKPAEINSRALE 128
Query: 275 ILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL-NAVIWLD- 332
+LA +G R ++ SGG R RV++ARAL P L+L DEPT +LD NA
Sbjct: 129 MLAAVGLEHRANHRPSE-LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQL 187
Query: 333 ----NYLQGWKKTLLIVSHD 348
N LQG L+V+HD
Sbjct: 188 LGELNRLQG--TAFLVVTHD 205
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 66.3 bits (162), Expect = 4e-12
Identities = 61/232 (26%), Positives = 98/232 (42%), Gaps = 54/232 (23%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHI------ASRDLKVP 200
+ +EN S+S + + +L + G+ L+GPNG GK+TL+R + +K
Sbjct: 5 VSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRN 64
Query: 201 PNIDILYCEQEVVADD---LTAVESV-LKADVKRTELLAECAKLEAADFSSEQQEQLKEI 256
+ I Y Q++ D LT + L+ K+ ++L
Sbjct: 65 GKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDIL---------------------- 102
Query: 257 YEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLL 316
P +R+ AG MQ SGG RV LARAL P LL+L
Sbjct: 103 -------------PALKRVQAGHLIDAPMQ-----KLSGGETQRVLLARALLNRPQLLVL 144
Query: 317 DEPTNHLDLNAVIWLDNYLQGWKKTL----LIVSHDQSFLDNVCNEIIHLDQ 364
DEPT +D+N + L + + ++ L L+VSHD + +E++ L+
Sbjct: 145 DEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH 196
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 65.4 bits (160), Expect = 5e-12
Identities = 59/226 (26%), Positives = 98/226 (43%), Gaps = 54/226 (23%)
Query: 166 NLLIANGRRYGLVGPNGHGKTTLLR------HIASRDLKV----P--------PNIDILY 207
+ I G G +GPNG GKTT L+ S +++V P I +++
Sbjct: 41 SFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVF 100
Query: 208 CEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADS 267
++ + DL ++S LLA L A F +++L E+ E L +
Sbjct: 101 GQKTQLWWDLPVIDSF--------YLLAAIYDLPPARF----KKRLDELSELLD-LE--- 144
Query: 268 AEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA 327
+L D + S G RMR +A AL EP +L LDEPT LD+ A
Sbjct: 145 ------ELL----------DTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVA 188
Query: 328 VIWLDNYLQGWKK----TLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369
+ N+L+ + + T+L+ SH ++ + ++ +D+ +L Y
Sbjct: 189 QENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLY 234
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 64.0 bits (156), Expect = 7e-12
Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 26/192 (13%)
Query: 166 NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225
N G L+G NG GK+TLL H+ +L + V D +
Sbjct: 12 NFAAERGEVLALLGANGAGKSTLLLHLNG----------LLRPQSGAVLIDGEPL----- 56
Query: 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELK------AIGADSAEPRARRILAGL 279
D R LL ++ + Q ++ +++ + E R R L +
Sbjct: 57 -DYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAV 115
Query: 280 GFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK 339
G S +++R T SGG + RV++A A+ + P +LLLDEPT LD + L+ +
Sbjct: 116 GAS-GLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLR 174
Query: 340 ---KTLLIVSHD 348
T++I +HD
Sbjct: 175 AEGMTVVISTHD 186
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 64.7 bits (158), Expect = 7e-12
Identities = 51/212 (24%), Positives = 85/212 (40%), Gaps = 33/212 (15%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
L++ G +VGP+G GK+TLL +A D + +L L ++
Sbjct: 28 GVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLL-------GQPLHKLDED 80
Query: 224 LKADVKRT---------ELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARR 274
+A ++ L+ LE + EL+ + + A+
Sbjct: 81 ARAALRARHVGFVFQSFHLIPNLTALENV-----------ALPLELRGESSADSRAGAKA 129
Query: 275 ILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL---NAVIWL 331
+L +G + + SGG + RV+LARA P +L DEPT +LD + + L
Sbjct: 130 LLEAVGLGKRL-THYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADL 188
Query: 332 DNYLQ-GWKKTLLIVSHDQSFLDNVCNEIIHL 362
L TL++V+HD L C+ + L
Sbjct: 189 LFALNRERGTTLVLVTHDPQ-LAARCDRQLRL 219
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 65.0 bits (159), Expect = 8e-12
Identities = 60/218 (27%), Positives = 96/218 (44%), Gaps = 35/218 (16%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI--- 203
I++EN ++ + N NL I + L+GP+G GK+TLLR + + VP
Sbjct: 2 IEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEG 61
Query: 204 DILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQL--KEIYEE-- 259
+L+ Q++ + VE L+ V F Q+ IY+
Sbjct: 62 KVLFDGQDIYDKKIDVVE--LRRRVGMV-------------F---QKPNPFPMSIYDNIA 103
Query: 260 --LKAIGADS---AEPRARRILAGLGFSRAMQDRATKN---FSGGWRMRVSLARALYIEP 311
+ G + L ++DR + SGG + R+ +ARAL +EP
Sbjct: 104 YGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEP 163
Query: 312 TLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSH 347
+LLLDEPT+ LD A ++ +Q KK T++IV+H
Sbjct: 164 EVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTH 201
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 67.5 bits (165), Expect = 8e-12
Identities = 60/251 (23%), Positives = 98/251 (39%), Gaps = 66/251 (26%)
Query: 146 DIKVENFSISAKGNDLFV-NANLLIANGRRYGLVGPNGHGKTTLLR-------------- 190
I+ EN S S G + + + I G + +VGP+G GK+TL++
Sbjct: 328 SIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEIL 387
Query: 191 ----HIASRDLKVPPNIDILYCEQEV------VADDLTAVESVLKADVKRTELLAECAKL 240
I L I Q+ + +++ + + D E+
Sbjct: 388 IDGIDIRDISLDSLRKR-IGIVSQDPLLFSGTIRENIA----LGRPDATDEEIEEALKLA 442
Query: 241 EAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300
A +F L + Y+ + +G N SGG R R
Sbjct: 443 NAHEFI----ANLPDGYDTI--VGERG-----------------------VNLSGGQRQR 473
Query: 301 VSLARALYIEPTLLLLDEPTNHLDLN--AVIW--LDNYLQGWKKTLLIVSHDQSFLDNVC 356
+++ARAL P +L+LDE T+ LD A+I L L+G +T LI++H S + N
Sbjct: 474 LAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKG--RTTLIIAHRLSTIKN-A 530
Query: 357 NEIIHLDQQKL 367
+ II LD ++
Sbjct: 531 DRIIVLDNGRI 541
Score = 29.7 bits (67), Expect = 4.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 510 PDPPPLQPPILGLHNVTFAYEGMKPLLVDV 539
PDP + NV+F+Y G KP+L D+
Sbjct: 319 PDPLKDTIGSIEFENVSFSYPGKKPVLKDI 348
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 66.2 bits (162), Expect = 9e-12
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 285 MQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD--LNAVI--WLDNYLQGWKK 340
+ DR SGG R RV+LARAL +EP +LLLDEP LD + + WL
Sbjct: 130 LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGV 189
Query: 341 TLLIVSHDQSFLDNVCNEIIHLDQQKL 367
T + V+HDQ + + ++ L+Q ++
Sbjct: 190 TTVFVTHDQEEALELADRVVVLNQGRI 216
Score = 40.8 bits (96), Expect = 0.001
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA 193
I++ N + +L I +G L+GP+G GK+TLLR IA
Sbjct: 3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIA 49
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 67.5 bits (165), Expect = 9e-12
Identities = 63/248 (25%), Positives = 108/248 (43%), Gaps = 55/248 (22%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTA---- 219
N NL I G G+VGP+G GK+TL + + + L P + +L ++ D
Sbjct: 475 NLNLDIKPGEFIGIVGPSGSGKSTLTKLL--QRLYTPQHGQVLVDGVDLAIADPAWLRRQ 532
Query: 220 VESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGL 279
+ VL+ E FS ++ + L GA LAG
Sbjct: 533 MGVVLQ---------------ENVLFSRSIRDNIA-----LCNPGAPFEHVIHAAKLAGA 572
Query: 280 ---------GFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN--AV 328
G++ + ++ N SGG R R+++ARAL P +L+ DE T+ LD A+
Sbjct: 573 HDFISELPQGYNTEVGEKGA-NLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEAL 631
Query: 329 IW--LDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQK---------LYYYKGNYSMF 377
I + +G +T++I++H S + C+ II L++ + L +G Y+
Sbjct: 632 IMRNMREICRG--RTVIIIAHRLSTVRA-CDRIIVLEKGQIAESGRHEELLALQGLYA-- 686
Query: 378 KKMYAQKS 385
+++ Q+S
Sbjct: 687 -RLWQQQS 693
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 63.0 bits (154), Expect = 1e-11
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 10/81 (12%)
Query: 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLD------LNAVIWLDNYLQGWKKTLLIVS 346
SGG R R+ LARALY P +L+LDEP +HLD LN I L+ T ++++
Sbjct: 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAI---AALKAAGATRIVIA 153
Query: 347 HDQSFLDNVCNEIIHLDQQKL 367
H L + I+ L+ ++
Sbjct: 154 HRPETL-ASADRILVLEDGRV 173
Score = 36.4 bits (85), Expect = 0.015
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 147 IKVENFSISAKGND--LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA 193
++VEN S G + + N + I G ++GP+G GK+TL R I
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLIL 49
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 64.7 bits (158), Expect = 1e-11
Identities = 70/231 (30%), Positives = 104/231 (45%), Gaps = 28/231 (12%)
Query: 147 IKVENFSISAKGNDLFV---NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI 203
I+V N S K FV + +L I +G L+GP+G GKTTLLR IA L+ P +
Sbjct: 3 IEVRNVS---KRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAG--LERPDSG 57
Query: 204 DILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI 263
IL+ ++ A D+ E + + L + F + ++
Sbjct: 58 TILFGGED--ATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKP---------RSE 106
Query: 264 GADSAEPRAR-RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNH 322
AE RA+ L L + DR SGG R RV+LARAL +EP +LLLDEP
Sbjct: 107 RPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGA 166
Query: 323 LDLNAVI------WLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
LD A + WL T + V+HDQ V + ++ +++ ++
Sbjct: 167 LD--AKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRI 215
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 64.1 bits (156), Expect = 1e-11
Identities = 58/210 (27%), Positives = 77/210 (36%), Gaps = 46/210 (21%)
Query: 172 GRRYGLVGPNGHGKTTLLR-------------HIASRDLKVPPNIDILYCEQ--EVVADD 216
G GL+GPNG GKTTLLR +A I Y Q E D
Sbjct: 6 GELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-KGWRHIGYVPQRHEFAWDF 64
Query: 217 LTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRIL 276
+V + + RT + + ADF A R L
Sbjct: 65 PISVAHTVMSG--RTGHIGWLRRPCVADF-----------------AAVRDALRRVG--L 103
Query: 277 AGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQ 336
L DR SGG R RV +ARAL P++LLLDEP LD+ L
Sbjct: 104 TEL------ADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFI 157
Query: 337 ---GWKKTLLIVSHDQSFLDNVCNEIIHLD 363
G +L+ +HD + C+ ++ L+
Sbjct: 158 ELAGAGTAILMTTHDLAQAMATCDRVVLLN 187
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 66.7 bits (163), Expect = 1e-11
Identities = 59/218 (27%), Positives = 96/218 (44%), Gaps = 53/218 (24%)
Query: 172 GRRYGLVGPNGHGKTT----LLRHIASRDLKVPPNIDILYCEQ----------------- 210
G GLVG +G GK+T LLR I S+ +I + Q
Sbjct: 312 GETLGLVGESGSGKSTTGLALLRLINSQG-------EIWFDGQPLHNLNRRQLLPVRHRI 364
Query: 211 EVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEP 270
+VV D S L + +++ E ++ S+ Q+EQ
Sbjct: 365 QVVFQD---PNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQ------------------ 403
Query: 271 RARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD--LNAV 328
+ ++ +G + R FSGG R R+++ARAL ++P+L++LDEPT+ LD + A
Sbjct: 404 QVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQ 463
Query: 329 I--WLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQ 364
I L + Q + L +SHD + +C+++I L Q
Sbjct: 464 ILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQ 501
Score = 40.5 bits (95), Expect = 0.002
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
SGG R RV +A AL P LL+ DEPT LD
Sbjct: 158 SGGERQRVMIAMALLTRPELLIADEPTTALD 188
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 64.1 bits (157), Expect = 2e-11
Identities = 51/203 (25%), Positives = 79/203 (38%), Gaps = 52/203 (25%)
Query: 147 IKVENFSISAKGNDLFVNA-NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN--- 202
I+VEN S + + +L I G L+GP+G GK+TLLR + V P
Sbjct: 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGL---VEPTSGS 57
Query: 203 IDILYCEQEVVA---------------------DDLTAVESVLKADVKRTELLAECAKLE 241
+ I + + + L+ +E+VL + R L
Sbjct: 58 VLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGL- 116
Query: 242 AADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301
F E++++ L+ +G L + RA SGG + RV
Sbjct: 117 ---FPKEEKQRALAA---LERVG-----------LLDKAYQRA------DQLSGGQQQRV 153
Query: 302 SLARALYIEPTLLLLDEPTNHLD 324
++ARAL +P L+L DEP LD
Sbjct: 154 AIARALMQQPKLILADEPVASLD 176
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 64.1 bits (156), Expect = 2e-11
Identities = 54/248 (21%), Positives = 96/248 (38%), Gaps = 58/248 (23%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLR-------------HIA 193
I++ + + + L G L+GP+G GK++LLR +IA
Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62
Query: 194 SRDL---KVPPNIDILYCEQEV--------VADDLTAVESVLKADVKRTELLAECAKLEA 242
K P + I + V + LT E++++A + L + A A
Sbjct: 63 GNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARA 122
Query: 243 ADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302
++ LK + + A DR + SGG + RV+
Sbjct: 123 -------EKLLKRLRLKPYA------------------------DRYPLHLSGGQQQRVA 151
Query: 303 LARALYIEPTLLLLDEPTNHLD---LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEI 359
+ARAL +EP +LL DEPT LD ++ + L T +IV+H+ + +
Sbjct: 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRV 211
Query: 360 IHLDQQKL 367
++++ +
Sbjct: 212 VYMENGHI 219
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 63.6 bits (155), Expect = 2e-11
Identities = 56/213 (26%), Positives = 91/213 (42%), Gaps = 20/213 (9%)
Query: 162 FVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221
N +L + G L GP+G GK+TLLR + + L I + + E E V DL E
Sbjct: 27 LRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRH-EGEWV--DLVTAE 83
Query: 222 SVLKADVKRT------ELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRI 275
+V+RT + L ++ A D +E + + A +A +
Sbjct: 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARG--------VPREVARAKAADL 135
Query: 276 LAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN---AVIWLD 332
L L + A FSGG + RV++AR ++ +LLLDEPT LD V+ L
Sbjct: 136 LTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELI 195
Query: 333 NYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQ 365
+ L+ + HD+ + V + ++ +
Sbjct: 196 REAKARGAALVGIFHDEEVREAVADRLLDVSAF 228
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 63.8 bits (156), Expect = 2e-11
Identities = 52/213 (24%), Positives = 88/213 (41%), Gaps = 35/213 (16%)
Query: 166 NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225
NL + G + ++GPNG GK+TL I +IL+ ++++ +L+ E
Sbjct: 24 NLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDIL--ELSPDERARA 81
Query: 226 ------------ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRAR 273
V ++ L + L E +ELK
Sbjct: 82 GIFLAFQYPVEIPGVTNSDFLRAAMNAR-----RGARGILPEFIKELK------------ 124
Query: 274 RILAGLGFSRAMQDRA-TKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA---VI 329
LG +R + FSGG + R + + L +EP L +LDEP + LD++A V
Sbjct: 125 EKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVA 184
Query: 330 WLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHL 362
N L+ + +LI++H Q LD + + +H+
Sbjct: 185 EGINALREEGRGVLIITHYQRLLDYIKPDKVHV 217
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 63.1 bits (154), Expect = 2e-11
Identities = 69/224 (30%), Positives = 98/224 (43%), Gaps = 42/224 (18%)
Query: 161 LFVNANLLIANGRRYGLVGPNGHGKTTLL------RHIASRDLKVPPNIDILYCEQEV-- 212
LF + NL I G L GP+G GKTTLL R + LKV QE+
Sbjct: 21 LF-DINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKV--------LGQELYG 71
Query: 213 -VADDLTAVESVLKADVKRTELLAECAKLEAADF-SSEQQEQLKEIYEELKAIGADSAEP 270
+L + + + LL F ++ Q Q+ E + A
Sbjct: 72 ASEKELVQLRRNIGYIFQAHNLL---------GFLTARQNVQMA--LELQPNLSYQEARE 120
Query: 271 RARRILAGLGFSRAMQDRATK---NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA 327
RAR +L +G + D N SGG + RV++ARAL P L+L DEPT LD +
Sbjct: 121 RARAMLEAVG----LGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKS 176
Query: 328 VIWLDNYLQGWKK----TLLIVSHDQSFLDNVCNEIIHLDQQKL 367
+ +Q + T+LIV+HD LD V + I+H++ KL
Sbjct: 177 GRDVVELMQKLAREQGCTILIVTHDNRILD-VADRIVHMEDGKL 219
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 63.6 bits (155), Expect = 3e-11
Identities = 65/225 (28%), Positives = 95/225 (42%), Gaps = 63/225 (28%)
Query: 149 VENFSIS--AKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN---- 202
V + S+S K + +L IA+G ++GP+G GKTTLL IA V P+
Sbjct: 6 VSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGF---VTPSRGSI 62
Query: 203 ------IDILYCEQEVVADD------LTAVESVLKADVKRTELLAECAKLEAADFSSEQQ 250
I+ E+ VV + L +++V
Sbjct: 63 QLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFG------------------------ 98
Query: 251 EQLKEIYEELKAIGADSAEPR--ARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALY 308
L+ G + A+ R A ++LA +G A + + SGG R RV +ARAL
Sbjct: 99 ---------LQLRGIEKAQRREIAHQMLALVGLEGA-EHKYIWQLSGGMRQRVGIARALA 148
Query: 309 IEPTLLLLDEPTNHLDLNA-----VIWLDNYLQGWKKTLLIVSHD 348
+EP LLLLDEP LD + LD + + K+ LLI +HD
Sbjct: 149 VEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLI-THD 192
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 65.4 bits (160), Expect = 3e-11
Identities = 62/246 (25%), Positives = 96/246 (39%), Gaps = 41/246 (16%)
Query: 134 TGGQLAALENAV-DIKVENFSISAKGNDLFV-NANLLIANGRRYGLVGPNGHGKTTLLRH 191
TG ++ +NA I +EN S+ + N + G R + G +G GKT+LLR
Sbjct: 379 TGRRIDFDDNADHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRA 438
Query: 192 IA------SRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADF 245
+A S + +P + +L+ Q L L+ E L C A DF
Sbjct: 439 LAGLWPWGSGRISMPADSALLFLPQRPY---LPQGT--LR------EAL--CYPNAAPDF 485
Query: 246 SSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305
S +L + L +G L L +DR + SGG + R++ AR
Sbjct: 486 SD---AELVAV---LHKVG-----------LGDLAERLDEEDRWDRVLSGGEQQRLAFAR 528
Query: 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHDQSFLDNVCNEIIHLD 363
L +P + LDE T+ LD L L+ T++ V H + L N + + L
Sbjct: 529 LLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGH-RPTLWNFHSRQLELL 587
Query: 364 QQKLYY 369
Sbjct: 588 DDAGGQ 593
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 63.1 bits (154), Expect = 5e-11
Identities = 51/187 (27%), Positives = 76/187 (40%), Gaps = 22/187 (11%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
I+ EN S S G L +L + G ++GPNG GK+TLL+ + S +L P + ++
Sbjct: 2 IRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKAL-SGELS-PDSGEVT 59
Query: 207 YCEQEVVADDLTAVESVLKADVKR--TELLAECAKLEAADFSSEQQEQLKEIYEELKAIG 264
V + E V + L A F+ ++ Q+ I
Sbjct: 60 L--NGVPLNSWPPEELARHRAVLPQNSSL--------AFPFTVQEVVQMGRIPHRSGREP 109
Query: 265 ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARAL------YIEPTLLLLDE 318
+ A + LA S + R + SGG + RV LAR L L LDE
Sbjct: 110 EEDERI-AAQALAATDLS-GLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDE 167
Query: 319 PTNHLDL 325
PT+ LD+
Sbjct: 168 PTSALDI 174
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 62.2 bits (152), Expect = 6e-11
Identities = 53/225 (23%), Positives = 90/225 (40%), Gaps = 59/225 (26%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIA----------SRDLKVPPNIDILYCEQEVV 213
+ + + G R GL+G NG GK+TLLR +A + +V + +
Sbjct: 40 DVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNP-- 97
Query: 214 ADDLTAVESV-LKA---DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAE 269
+LT E++ L + R E+ E++ EI E
Sbjct: 98 --ELTGRENIYLNGRLLGLSRKEI----------------DEKIDEIIE----------- 128
Query: 270 PRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN--- 326
+ LG D K +S G + R++ A A +EP +LL+DE D
Sbjct: 129 ------FSELG---DFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQE 179
Query: 327 -AVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370
L L+ KT+++VSHD S + +C+ + L++ K+ +
Sbjct: 180 KCQRRLRELLKQ-GKTVILVSHDPSSIKRLCDRALVLEKGKIRFD 223
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 63.5 bits (154), Expect = 9e-11
Identities = 60/212 (28%), Positives = 89/212 (41%), Gaps = 25/212 (11%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
I++++ ++ N + + +L I G L+G +G GKTTLLR IA V L
Sbjct: 6 IRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGF---VKA--AGL 60
Query: 207 YCEQEVVADDLTAV---ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI 263
+ DLT + L + L + F Q+ K
Sbjct: 61 TGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPK--------- 111
Query: 264 GADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHL 323
AD AE R L +G A SGG + R+++ARA+ IEP +LLLDEP + L
Sbjct: 112 -ADIAE-RVADALKLVGLGDAAA-HLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSAL 168
Query: 324 DLNAVIWLDNYLQGWKK-----TLLIVSHDQS 350
D N + + + T+L V+HDQ
Sbjct: 169 DANIRANMREEIAALHEELPELTILCVTHDQD 200
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 61.4 bits (150), Expect = 1e-10
Identities = 54/235 (22%), Positives = 93/235 (39%), Gaps = 63/235 (26%)
Query: 159 NDLFVNANLLIANGRRYGLVGPNGHGKTTLLR-------------HIASRDL-----KVP 200
+DL +N + G +GL+G NG GKTT L+ +I +
Sbjct: 19 DDLSLN----VYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAAR 74
Query: 201 PNIDILYCEQE-VVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEE 259
++ YC Q + D+LT E + Y
Sbjct: 75 QSLG--YCPQFDALFDELTVREHL-------------------------------RFYAR 101
Query: 260 LKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEP 319
LK + + +L LG + ++ + SGG + ++SLA AL P++LLLDEP
Sbjct: 102 LKGLPKSEIKEEVELLLRVLGLT-DKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEP 160
Query: 320 TNHLDLNA--VIWLDNYLQGWKK--TLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370
T+ LD + IW + + +K ++++ +H + +C+ I + KL
Sbjct: 161 TSGLDPASRRAIW--DLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCI 213
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 61.4 bits (149), Expect = 1e-10
Identities = 50/198 (25%), Positives = 86/198 (43%), Gaps = 22/198 (11%)
Query: 156 AKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVAD 215
A + N +L + G + GP+G GK+TLL+ +AS P L E E V+
Sbjct: 13 AGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLI---SPTSGTLLFEGEDVST 69
Query: 216 DLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEP-RARR 274
LK + R ++ + CA+ A F ++ L ++ I + A
Sbjct: 70 --------LKPEAYRQQV-SYCAQ-TPALFGDTVEDNLIFPWQ----IRNRRPDRAAALD 115
Query: 275 ILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNY 334
+LA ++ + SGG + R++L R L P +LLLDE T+ LD + ++
Sbjct: 116 LLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEM 175
Query: 335 LQGW----KKTLLIVSHD 348
+ + +L ++HD
Sbjct: 176 IHRYVREQNVAVLWITHD 193
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 63.5 bits (155), Expect = 1e-10
Identities = 55/224 (24%), Positives = 88/224 (39%), Gaps = 35/224 (15%)
Query: 147 IKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNID 204
+ VEN +I G + + G ++GP+G GK+TL R I +
Sbjct: 317 LSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLI----------VG 366
Query: 205 ILYCEQEVVADDLTAVESVLKADVKRT--------ELLAECAKLEAADFSSEQQEQLKEI 256
I V D ++ + + EL A F + +I
Sbjct: 367 IWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPE--KI 424
Query: 257 YEELKAIGADSAEPRARRILAGL--GFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLL 314
E K G ++ L G+ + SGG R R++LARALY +P L+
Sbjct: 425 IEAAKLAGV-------HELILRLPDGYDTVIGPGGA-TLSGGQRQRIALARALYGDPKLV 476
Query: 315 LLDEPTNHLDLNAVIWLDNYLQGWKK---TLLIVSHDQSFLDNV 355
+LDEP ++LD L N ++ K T+++++H S L V
Sbjct: 477 VLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCV 520
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 63.4 bits (155), Expect = 1e-10
Identities = 63/213 (29%), Positives = 101/213 (47%), Gaps = 39/213 (18%)
Query: 166 NLLIANGRRYGLVGPNGHGKTT----LLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221
+L + G+ GLVG +G GK+T LLR I S+ +I + Q++ D L+
Sbjct: 307 SLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQG-------EIRFDGQDI--DGLS--- 354
Query: 222 SVLKADVKRTELLAECAKLEAA---DFSSEQQEQ-LKEIYEE-----LKAIGADSAEPRA 272
R E+ +++ + S + +I EE + A + R
Sbjct: 355 --------RKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRV 406
Query: 273 RRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA---VI 329
L +G A ++R FSGG R R+++ARAL ++P L+LLDEPT+ LD + V+
Sbjct: 407 IEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVL 466
Query: 330 WLDNYLQGWKKTL--LIVSHDQSFLDNVCNEII 360
L LQ K L L +SHD + + +C+ +I
Sbjct: 467 DLLRDLQQ-KHGLSYLFISHDLAVVRALCHRVI 498
Score = 56.9 bits (138), Expect = 2e-08
Identities = 59/241 (24%), Positives = 91/241 (37%), Gaps = 49/241 (20%)
Query: 147 IKVENFSISAKGNDLFVNA----NLLIANGRRYGLVGPNGHGKT----TLLRHIASRDLK 198
+ + N S++ V A + I G LVG +G GK+ ++L + S
Sbjct: 7 LSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPA-A 65
Query: 199 VPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQE------- 251
P+ IL+ +++ L A E L+ + QE
Sbjct: 66 AHPSGSILFDGEDL----LAASERQLRG-------------VRGNKIGMIFQEPMTSLNP 108
Query: 252 ------QLKEIYEELKAIGADSAEPRARRIL--AGLGFSRAMQDRATKNFSGGWRMRVSL 303
QL E+ + + +A RA +L G+ D SGG R RV +
Sbjct: 109 LHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMI 168
Query: 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTL----LIVSHDQS----FLDNV 355
A AL EP LL+ DEPT LD+ + + L+ + L L ++HD F D V
Sbjct: 169 AMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRV 228
Query: 356 C 356
Sbjct: 229 Y 229
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 60.7 bits (148), Expect = 1e-10
Identities = 53/182 (29%), Positives = 67/182 (36%), Gaps = 38/182 (20%)
Query: 156 AKGND-LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVA 214
+G LF + +A G L GPNG GKTTLLR IA L P I +
Sbjct: 11 VRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAG--LLPPAAGTIKLDGGD--I 66
Query: 215 DDLTAVESV--------LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD 266
DD E+ +K + E L A + I L+A+G
Sbjct: 67 DDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELD--------IAAALEAVG-- 116
Query: 267 SAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN 326
LA L S G + RV+LAR L + +LDEPT LD
Sbjct: 117 ---------LAPLA------HLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAA 161
Query: 327 AV 328
AV
Sbjct: 162 AV 163
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 60.6 bits (147), Expect = 2e-10
Identities = 52/208 (25%), Positives = 83/208 (39%), Gaps = 26/208 (12%)
Query: 149 VENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYC 208
++N S+ G+ L N N IA G L+GP+G GK+TLL +
Sbjct: 5 LKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIG-------------- 50
Query: 209 EQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSA 268
+A + L + +R ++L + F + + L +
Sbjct: 51 ---ALAGQFS-CTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATL 106
Query: 269 EPRARRILAGLGFSRA----MQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
+ ARR A R+ + SGG R RV+L RAL +P LLLDEP + LD
Sbjct: 107 KGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLD 166
Query: 325 L----NAVIWLDNYLQGWKKTLLIVSHD 348
+ W+ + ++ + V+HD
Sbjct: 167 VALRDQFRQWVFSEVRAAGIPTVQVTHD 194
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 60.9 bits (148), Expect = 2e-10
Identities = 55/208 (26%), Positives = 90/208 (43%), Gaps = 24/208 (11%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
N +L + G L GP+G GK+TLL+ + + L P + IL + D A
Sbjct: 26 NVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL--PDSGRILVRHEGAWVDLAQASPRE 83
Query: 224 LKADVKRTEL------LAECAKLEAADFSSEQQEQLKEIYEELKAIGA--DSAEPRARRI 275
+ +V+R + L ++ A + + E L G ++A RAR +
Sbjct: 84 V-LEVRRKTIGYVSQFLRVIPRVSALEV----------VAEPLLERGVPREAARARAREL 132
Query: 276 LAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN---AVIWLD 332
LA L + FSGG + RV++AR + +LLLDEPT LD V+ L
Sbjct: 133 LARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELI 192
Query: 333 NYLQGWKKTLLIVSHDQSFLDNVCNEII 360
+ L+ + HD+ + V + ++
Sbjct: 193 AEAKARGAALIGIFHDEEVRELVADRVM 220
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 61.2 bits (148), Expect = 2e-10
Identities = 62/253 (24%), Positives = 103/253 (40%), Gaps = 54/253 (21%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA---SRDLKVPPNI 203
I+VE + + + +L I +G L+GP+G GK+TLLRH++ + D +I
Sbjct: 5 IRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHI 64
Query: 204 DIL----YCEQEVVAD-------------------DLTAVESVLKADVKRTELLAECAKL 240
++L E + D L+ +E+VL + T C
Sbjct: 65 ELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSW 124
Query: 241 EAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300
F+ EQ++ RA + L +G R + SGG + R
Sbjct: 125 ----FTREQKQ-------------------RALQALTRVGMVHFAHQRVS-TLSGGQQQR 160
Query: 301 VSLARALYIEPTLLLLDEPTNHLD-LNAVIWLDNYL---QGWKKTLLIVSHDQSFLDNVC 356
V++ARAL + ++L DEP LD +A I +D Q T+++ H + C
Sbjct: 161 VAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYC 220
Query: 357 NEIIHLDQQKLYY 369
I+ L Q ++Y
Sbjct: 221 ERIVALRQGHVFY 233
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 61.6 bits (150), Expect = 2e-10
Identities = 59/213 (27%), Positives = 95/213 (44%), Gaps = 30/213 (14%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILY---------CEQEVVA 214
N ++ I G ++G G GKTT + H+ + L I+ ++ E+E V
Sbjct: 25 NVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVL 84
Query: 215 DDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADS------- 267
+ L + K K+ + + E + F + + ++ E+ G S
Sbjct: 85 EKLV----IQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEE 140
Query: 268 AEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA 327
A+ RA + + +G + R+ SGG + RV+LA L +EP L+ DEPT LD
Sbjct: 141 AKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQG 200
Query: 328 VI----WLDN-YLQGWKKTLLIVSHDQSFLDNV 355
V DN QG KT+++V+HD LDNV
Sbjct: 201 VKEILEIFDNLNKQG--KTIILVTHD---LDNV 228
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 60.8 bits (148), Expect = 2e-10
Identities = 59/246 (23%), Positives = 95/246 (38%), Gaps = 65/246 (26%)
Query: 153 SISAKGNDLFVNA-------NLLIANGRRYGLVGPNGHGKTTLLR-------------HI 192
SI G + F A L G L+GP+G GK++LLR +I
Sbjct: 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNI 61
Query: 193 ASR--DLKVPPNI-DILYCEQEV--------VADDLTAVESVLKADVKRTELLAECAKLE 241
A D P+ I + V + LT +++++A + L
Sbjct: 62 AGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGL-------- 113
Query: 242 AADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301
S+ Q A RA ++L L DR + SGG + RV
Sbjct: 114 -----SKDQ-----------------ALARAEKLLERLRLK-PYADRFPLHLSGGQQQRV 150
Query: 302 SLARALYIEPTLLLLDEPTNHLD---LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNE 358
++ARAL +EP +LL DEPT LD ++ + L T +IV+H+ +
Sbjct: 151 AIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASR 210
Query: 359 IIHLDQ 364
+++++
Sbjct: 211 VVYMEN 216
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 59.8 bits (145), Expect = 2e-10
Identities = 50/185 (27%), Positives = 68/185 (36%), Gaps = 31/185 (16%)
Query: 149 VENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYC 208
+ + G LF + +A G + GPNG GKTTLLR +A L P +L
Sbjct: 3 ADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAG--LSPPLAGRVLLN 60
Query: 209 EQEVVADDLTAVESVLKADVKRTELLAECAKLEAAD-----FSSEQQEQLKEIYEELKAI 263
+ D +R + L A S + + A
Sbjct: 61 GGPL--------------DFQRDSIARGLLYLGHAPGIKTTLSVLENLRF------WHAD 100
Query: 264 GADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHL 323
+D A LA +G +DR S G + RV+LAR L L +LDEPT L
Sbjct: 101 HSDEQVEEA---LARVGL-NGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTAL 156
Query: 324 DLNAV 328
D V
Sbjct: 157 DKAGV 161
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 61.9 bits (151), Expect = 3e-10
Identities = 61/216 (28%), Positives = 79/216 (36%), Gaps = 69/216 (31%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIA-------------SRDLK-VPP---NIDIL 206
+ +L I G L+GP+G GKTTLLR IA D+ VPP I +
Sbjct: 23 DISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGM- 81
Query: 207 YCEQEVVAD-----DLTAVESV---LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYE 258
V +T E+V LK K + E + E
Sbjct: 82 -----VFQSYALFPHMTVEENVAFGLKVRKKLKK-----------------AEIKARVEE 119
Query: 259 ELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDE 318
L+ +G E A R L S Q R V+LARAL EP +LLLDE
Sbjct: 120 ALELVG---LEGFADRKPHQL--SGGQQQR------------VALARALVPEPKVLLLDE 162
Query: 319 PTNHLDLN----AVIWLDNYLQGWKKTLLIVSHDQS 350
P + LD L + T + V+HDQ
Sbjct: 163 PLSALDAKLREQMRKELKELQRELGITFVYVTHDQE 198
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 61.4 bits (149), Expect = 3e-10
Identities = 58/202 (28%), Positives = 95/202 (47%), Gaps = 24/202 (11%)
Query: 169 IANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADV 228
+ G +GL+GPNG GKTT LR + L P I C + V + A
Sbjct: 30 VQRGECFGLLGPNGAGKTTTLRMLLG--LTHPDAGSISLCGEPVPSRARHAR-------- 79
Query: 229 KRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQ-- 286
+R ++ + L+ DF+ + + Y G +A RA + L F++
Sbjct: 80 QRVGVVPQFDNLDP-DFTVRENLLVFGRY-----FGLSAAAARAL-VPPLLEFAKLENKA 132
Query: 287 DRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA--VIW--LDNYLQGWKKTL 342
D SGG + R++LARAL +P +L+LDEPT LD A ++W L + L KT+
Sbjct: 133 DAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLAR-GKTI 191
Query: 343 LIVSHDQSFLDNVCNEIIHLDQ 364
L+ +H + +C+ + +++
Sbjct: 192 LLTTHFMEEAERLCDRLCVIEE 213
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 60.1 bits (146), Expect = 3e-10
Identities = 55/209 (26%), Positives = 89/209 (42%), Gaps = 35/209 (16%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
++ +N S N +L + YGL+GPNG GK+TLL+ I + P + +I+
Sbjct: 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITG--ILRPTSGEII 58
Query: 207 YCEQEVVADDLTAVESVLKA-----DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELK 261
+ DL + S++++ ++ E L L S I E L
Sbjct: 59 FDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDS--------RIDEVLN 110
Query: 262 AIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTN 321
+ L G +A K FS G + R+ +A AL P LL+LDEPTN
Sbjct: 111 IVD-----------LTNTGKKKA------KQFSLGMKQRLGIAIALLNHPKLLILDEPTN 153
Query: 322 HLDLNAVIWLDNYLQGWKK---TLLIVSH 347
LD + L ++ + + T+++ SH
Sbjct: 154 GLDPIGIQELRELIRSFPEQGITVILSSH 182
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 60.1 bits (146), Expect = 4e-10
Identities = 62/227 (27%), Positives = 102/227 (44%), Gaps = 54/227 (23%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLR------HIASRDLKVP------PNIDILYCEQE 211
N +L I G ++GP+G GK+TLLR I S DL V P +D QE
Sbjct: 19 NIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78
Query: 212 V--------VADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI 263
+ LTA+E+V+ ++ ++
Sbjct: 79 AGMVFQQFYLFPHLTALENVMFGPLR------------------------------VRGA 108
Query: 264 GADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHL 323
+ AE +AR +LA +G + SGG + RV++ARAL ++P L+L DEPT+ L
Sbjct: 109 SKEEAEKQARELLAKVGLAERA-HHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSAL 167
Query: 324 D---LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
D + V+ + L T++IV+H+ F + V + +I +D+ ++
Sbjct: 168 DPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRI 214
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 60.9 bits (148), Expect = 5e-10
Identities = 68/220 (30%), Positives = 100/220 (45%), Gaps = 44/220 (20%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
N NL I G L+GP+G GKTT+LR +A L+ P I + + E V S+
Sbjct: 24 NLNLTIKQGTMVTLLGPSGCGKTTVLRLVAG--LEKPTEGQI-FIDGEDVTH-----RSI 75
Query: 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEE----LKAIGADSAEPRARRI---- 275
+ D+ C F S + E LK +G E R +R+
Sbjct: 76 QQRDI--------CMV-----FQSYALFPHMSLGENVGYGLKMLGVPKEE-RKQRVKEAL 121
Query: 276 ----LAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWL 331
LAG +DR SGG + RV+LARAL ++P +LL DEP ++LD N +
Sbjct: 122 ELVDLAG------FEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSM 175
Query: 332 DNYL----QGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
+ Q + T L V+HDQS V + +I +++ K+
Sbjct: 176 REKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKI 215
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 59.6 bits (145), Expect = 5e-10
Identities = 49/225 (21%), Positives = 99/225 (44%), Gaps = 17/225 (7%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
+K+++ +S + ++ NL + G + ++GPNG GK+TL + IA P+ ++
Sbjct: 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH-----PSYEVT 55
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLA-----ECAKLEAADFSSEQQEQLKEIYEELK 261
DL +E +A + LA E + +F + +
Sbjct: 56 SGTILFKGQDLLELEPDERA--RAGLFLAFQYPEEIPGVSNLEFLRSALNARRS-ARGEE 112
Query: 262 AIGADSAEPRARRILAGLGFSRAMQDRA-TKNFSGGWRMRVSLARALYIEPTLLLLDEPT 320
+ + LA LG +R+ + FSGG + R + + +EP L +LDE
Sbjct: 113 PLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEID 172
Query: 321 NHLDLNAVIWLDNYLQGWK---KTLLIVSHDQSFLDNVCNEIIHL 362
+ LD++A+ + + + ++ LI++H Q L+ + + +H+
Sbjct: 173 SGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHV 217
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 59.3 bits (144), Expect = 5e-10
Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 36/204 (17%)
Query: 160 DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTA 219
+ +L I G +VG +G GK+TLL H+ L P + ++L+ Q L+
Sbjct: 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLL-HLLG-GLDNPTSGEVLFNGQ-----SLSK 71
Query: 220 VESVLKADVKRTE---------LLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEP 270
+ S +A ++ + LL + LE ++ + A+
Sbjct: 72 LSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVK-----------EAKE 120
Query: 271 RARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD-LNAVI 329
RA +L +G + R ++ SGG R RV++ARAL +P+L+L DEPT +LD NA I
Sbjct: 121 RAYEMLEKVGLEHRINHRPSE-LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKI 179
Query: 330 WLD-----NYLQGWKKTLLIVSHD 348
D N + L+V+HD
Sbjct: 180 IFDLMLELNRELN--TSFLVVTHD 201
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 60.9 bits (148), Expect = 6e-10
Identities = 52/193 (26%), Positives = 87/193 (45%), Gaps = 22/193 (11%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
+A+L + G + ++G +G GK+TL+R + +R L P +IL +++ + +
Sbjct: 46 DASLDVEEGEIFVIMGLSGSGKSTLVRLL-NR-LIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 224 LKADV----KRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGL 279
+ + + LL LE F E++ + E RA L +
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFG-----------LEVQGVPKAEREERALEALELV 152
Query: 280 GFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD-LNAVIWLDNYLQ-- 336
G D+ SGG + RV LARAL +P +LL+DE + LD L D L+
Sbjct: 153 GLE-GYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQ 211
Query: 337 -GWKKTLLIVSHD 348
KKT++ ++HD
Sbjct: 212 AKLKKTIVFITHD 224
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 59.8 bits (145), Expect = 7e-10
Identities = 53/208 (25%), Positives = 95/208 (45%), Gaps = 11/208 (5%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
N +L I G GL+G +G GK+TL R + L+ P + + Q DL ++
Sbjct: 29 NVSLSIEEGETVGLLGRSGCGKSTLARLLLG--LEKPAQGTVSFRGQ-----DLYQLDRK 81
Query: 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR 283
+ +R L A + ++ + E L ++ + R +L +G
Sbjct: 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS 141
Query: 284 AMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD--LNAVI--WLDNYLQGWK 339
D+ + SGG R+++ARAL ++P L++LDE ++LD L AVI L Q +
Sbjct: 142 EDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFG 201
Query: 340 KTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
L ++HD + + C + +D+ ++
Sbjct: 202 TAYLFITHDLRLVQSFCQRVAVMDKGQI 229
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 61.0 bits (148), Expect = 8e-10
Identities = 63/218 (28%), Positives = 96/218 (44%), Gaps = 47/218 (21%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVAD---DLTAV 220
N +L + G +G+VG +G GKTTL + IA + P + V D D+T
Sbjct: 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAG---VLEPTSGEVNVR---VGDEWVDMTKP 355
Query: 221 ESVLKADVKR-----------------TELLAECAKLEAADFSSEQQEQLKEIYEELKAI 263
+ KR + L E LE D + ++K + LK +
Sbjct: 356 GPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPD----ELARMKAVIT-LKMV 410
Query: 264 GADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHL 323
G D E +A IL D+ S G R RV+LA+ L EP +++LDEPT +
Sbjct: 411 GFD--EEKAEEIL----------DKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTM 458
Query: 324 D-LNAVIWLDNYLQGWK---KTLLIVSHDQSFLDNVCN 357
D + V + L+ + +T +IVSHD F+ +VC+
Sbjct: 459 DPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCD 496
Score = 56.0 bits (135), Expect = 3e-08
Identities = 65/290 (22%), Positives = 119/290 (41%), Gaps = 33/290 (11%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
I+V+N + G ++ N + I G G++G +G GK+ L+ + D P + I+
Sbjct: 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII 60
Query: 207 Y----CE-------QEVVADDLTAVESVLK---------ADVKRTELLAECAKLEAADFS 246
Y CE V + L+ +D R + A + F+
Sbjct: 61 YHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFA 120
Query: 247 -SEQQEQLKEIYEELKAIG--ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303
L + E L+ IG A RA ++ + S + A ++ SGG + RV L
Sbjct: 121 LYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIA-RDLSGGEKQRVVL 179
Query: 304 ARALYIEPTLLLLDEPTNHLD-LNAVIWLDNYLQGWKK---TLLIVSHDQSFLDNVCNEI 359
AR L EP L L DEPT LD A + + + K ++++ SH ++++ ++
Sbjct: 180 ARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKA 239
Query: 360 IHLDQQKLYYYKGNYSMFKKMYAQKSK--ERMKEFEKQEK--RIKELKAH 405
I L+ ++ +G ++ + E+ E E E +++ +
Sbjct: 240 IWLENGEI-KEEGTPDEVVAVFMEGVSEVEKECEVEVGEPIIKVRNVSKR 288
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 58.8 bits (143), Expect = 9e-10
Identities = 50/206 (24%), Positives = 82/206 (39%), Gaps = 51/206 (24%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK------------VPPNID-----IL 206
+ +L + +G+ ++G +G GKTTLL I+ R P D +
Sbjct: 25 DVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVA 84
Query: 207 YCEQ-EVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA 265
Y Q +++ LT E++ + R L S +++ E L+ +
Sbjct: 85 YVRQDDILLPGLTVRETLTYTAILR---LPRK-------SSDAIRKKRVED-VLLRDL-- 131
Query: 266 DSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD- 324
A + G K SGG R RVS+A L +P +L+LDEPT+ LD
Sbjct: 132 ------ALTRIGGNLV---------KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDS 176
Query: 325 ---LNAVIWLDNYLQGWKKTLLIVSH 347
LN V L + + +++ H
Sbjct: 177 FTALNLVSTLSQLARR-NRIVILTIH 201
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 58.8 bits (143), Expect = 9e-10
Identities = 50/220 (22%), Positives = 88/220 (40%), Gaps = 49/220 (22%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVA--------- 214
+ + I G R G++G NG GK+TLL+ IA P + +V
Sbjct: 45 DISFEIYKGERVGIIGHNGAGKSTLLKLIAG---IYKPTSGKVKVTGKVAPLIELGAGFD 101
Query: 215 DDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARR 274
+LT E++ L ++++ E +E+ + AE
Sbjct: 102 PELTGRENI---------------YLRGL-ILGLTRKEIDEKVDEI----IEFAE----- 136
Query: 275 ILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN----AVIW 330
LG D+ K +S G R++ + A ++EP +LLLDE D +
Sbjct: 137 ----LG---DFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLER 189
Query: 331 LDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370
L+ ++ KT+++VSHD + C+ I L+ ++
Sbjct: 190 LNELVEK-NKTIVLVSHDLGAIKQYCDRAIWLEHGQIRME 228
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 61.0 bits (149), Expect = 1e-09
Identities = 55/195 (28%), Positives = 80/195 (41%), Gaps = 48/195 (24%)
Query: 176 GLVGPNGHGKTTLLRHIASRDLK-----VPPNIDILYCEQEVVAD-DLTAVESVLKADVK 229
G+VGPNG GKTT + +A LK V P + I Y Q + D D T VE +L++
Sbjct: 369 GIVGPNGIGKTTFAKLLAG-VLKPDEGEVDPELKISYKPQYIKPDYDGT-VEDLLRS--- 423
Query: 230 RTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRA 289
D S E I+ L R + D+
Sbjct: 424 -----------ITDDLGSSY------YKSE---------------IIKPLQLERLL-DKN 450
Query: 290 TKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD----LNAVIWLDNYLQGWKKTLLIV 345
K+ SGG RV++A L + L LLDEP+ HLD L + + + T L+V
Sbjct: 451 VKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVV 510
Query: 346 SHDQSFLDNVCNEII 360
HD +D + + ++
Sbjct: 511 DHDIYMIDYISDRLM 525
Score = 46.3 bits (111), Expect = 3e-05
Identities = 58/209 (27%), Positives = 86/209 (41%), Gaps = 59/209 (28%)
Query: 172 GRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRT 231
G+ G++GPNG GKTT ++ I S +L PN+ E+E D+ VLK + T
Sbjct: 99 GKVTGILGPNGIGKTTAVK-ILSGELI--PNLGDY--EEEPSWDE------VLKR-FRGT 146
Query: 232 ELLAECAKLEAADFSSEQQEQLKEIYE-ELKAI----------------------GADSA 268
EL Q K++Y E+K + D
Sbjct: 147 EL----------------QNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDER 190
Query: 269 EPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD---- 324
+ ++ LG + DR SGG RV++A AL + DEPT++LD
Sbjct: 191 G-KLDEVVERLGLENIL-DRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQR 248
Query: 325 LNAVIWLDNYLQGWKKTLLIVSHDQSFLD 353
LN + +G K +L+V HD + LD
Sbjct: 249 LNVARLIRELAEG--KYVLVVEHDLAVLD 275
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 59.1 bits (144), Expect = 1e-09
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTL----LIVSHDQ 349
SGG R RV+LARA+ ++P LL LDEPT+ LD + +D ++ L ++V+HD
Sbjct: 147 SGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDL 206
Query: 350 SFLDNVCNEIIHLDQQKL 367
L + + + L K+
Sbjct: 207 DSLLTIADRVAVLADGKV 224
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 59.0 bits (144), Expect = 1e-09
Identities = 53/205 (25%), Positives = 79/205 (38%), Gaps = 60/205 (29%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
++ N S+ G L + +L + G ++GPNG GK+TLLR + S +L P + ++
Sbjct: 3 LEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRAL-SGELS-PDSGEVR 60
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKLEA---------ADFSSEQQEQLKEIY 257
+ + AD EL A+ A F+ E
Sbjct: 61 LNGRPL-------------ADWSPAEL----ARRRAVLPQHSSLSFPFTVE--------- 94
Query: 258 EELKAIGAD---SAEPRARRILAGLGFSRAMQ--------DRATKNFSGGWRMRVSLARA 306
E+ A+G + ++A A+ R SGG + RV LAR
Sbjct: 95 -EVVAMGRAPHGLSRAEDDALVA-----AALAQVDLAHLAGRDYPQLSGGEQQRVQLARV 148
Query: 307 L------YIEPTLLLLDEPTNHLDL 325
L P LLLDEPT+ LDL
Sbjct: 149 LAQLWEPDGPPRWLLLDEPTSALDL 173
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 58.0 bits (141), Expect = 1e-09
Identities = 61/217 (28%), Positives = 95/217 (43%), Gaps = 40/217 (18%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
+ +L I G L GP+G GKTTLL+ + + I A E V
Sbjct: 20 DVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRI-------------AGEDV 66
Query: 224 LKADVKRTELLAECAKLEAADFSSEQQEQL---KEIYEE----LKAIGADSAE--PRARR 274
+ ++ LL + DF +L + +YE L+ G E R
Sbjct: 67 NRLRGRQLPLLRRRIGVVFQDF------RLLPDRTVYENVALPLEVRGKKEREIQRRVGA 120
Query: 275 ILAGLGFSRAMQDRATKNF----SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIW 330
L +G ++ +A F SGG + RV++ARA+ P LLL DEPT +LD +
Sbjct: 121 ALRQVG----LEHKA-DAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSER 175
Query: 331 LDNYLQGWKK---TLLIVSHDQSFLDNVCNEIIHLDQ 364
+ + L+ K T+++ +HD S +D V + +I LD
Sbjct: 176 ILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDD 212
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 58.6 bits (142), Expect = 2e-09
Identities = 35/105 (33%), Positives = 60/105 (57%), Gaps = 10/105 (9%)
Query: 266 DSAEPRARRILAGLGFSRAMQDRATK---NFSGGWRMRVSLARALYIEPTLLLLDEPTNH 322
A RA + LA +G + ++A + SGG + RV++ARAL +EP ++L DEPT+
Sbjct: 127 AEAIERAEKYLAKVG----IAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSA 182
Query: 323 LD---LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQ 364
LD + V+ + L +T+++V+H+ F +V + +I L Q
Sbjct: 183 LDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQ 227
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 58.1 bits (141), Expect = 2e-09
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 5/115 (4%)
Query: 269 EPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAV 328
E + I LG + +R + SGG + RV++ARAL + P +LLLDEP + LD+
Sbjct: 107 ERKVLEIAEMLGIDHLL-NRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTK 165
Query: 329 IWLDNYLQGWKK----TLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKK 379
L L+ +K T+L V+HD + +++ + KL +FKK
Sbjct: 166 EKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220
Score = 31.5 bits (72), Expect = 0.92
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 147 IKVENFSISAKGNDLFV-NANLLIANGRRYGLVGPNGHGKTTLLRHIA 193
+KVEN S + + N +L + G + ++GP G GK+ LL IA
Sbjct: 1 LKVENLSK--DWKEFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIA 46
>gnl|CDD|221805 pfam12848, ABC_tran_2, ABC transporter. This domain is related to
pfam00005.
Length = 85
Score = 54.1 bits (131), Expect = 2e-09
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 12/97 (12%)
Query: 360 IHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEV 419
+ L+ KL YKGNYS + + ++ +++ K +EKQ+K IK+L+ + K K
Sbjct: 1 LELENGKLTTYKGNYSQYLEQKEERLEQQEKAYEKQQKEIKKLEEFIDRFRAKASKAK-- 58
Query: 420 LTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSF 456
+ +S+++ ++ E I+KP E K F
Sbjct: 59 ------QAQSRIKALEK----MERIEKPVEKKPKIRF 85
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 58.2 bits (141), Expect = 2e-09
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 270 PRARRILAGLGFSRAMQDRATK---NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN 326
A + LA +G + DRA + SGG + RV+LARAL P LLLLDEP LD
Sbjct: 112 DAALQALAAVGLA----DRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDAL 167
Query: 327 AVIWLDNYLQG-WKK---TLLIVSHDQS 350
I + + ++ W++ T+L+V+HD S
Sbjct: 168 TRIEMQDLIESLWQQHGFTVLLVTHDVS 195
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 60.0 bits (146), Expect = 2e-09
Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 291 KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQS 350
N SGG R R+ +ARAL P++L+LDE T+ LD +D+ L+ T +IV+H S
Sbjct: 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLS 673
Query: 351 FLDNVCNEIIHLDQQK 366
+ + C+EII L++ K
Sbjct: 674 TIRD-CDEIIVLERGK 688
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 58.2 bits (141), Expect = 2e-09
Identities = 54/208 (25%), Positives = 95/208 (45%), Gaps = 11/208 (5%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
N +L + +G L+G +G GK+TL R + L+ P ++ + + L +
Sbjct: 30 NVSLSLKSGETVALLGRSGCGKSTLARLLVG--LESPSQGNVSWRGE-----PLAKLNRA 82
Query: 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR 283
+ +R + + A + +E ++E L ++ RA +L +
Sbjct: 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDD 142
Query: 284 AMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN---AVIWLDNYLQGWKK 340
++ D+ SGG RV LARAL +EP LL+LDE ++LDL VI L LQ
Sbjct: 143 SVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFG 202
Query: 341 T-LLIVSHDQSFLDNVCNEIIHLDQQKL 367
T L ++HD ++ C ++ +D ++
Sbjct: 203 TACLFITHDLRLVERFCQRVMVMDNGQI 230
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 58.7 bits (142), Expect = 2e-09
Identities = 59/230 (25%), Positives = 102/230 (44%), Gaps = 21/230 (9%)
Query: 147 IKVEN----FSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN 202
IK+ N F K N +L + G+ YG++G +G GK+TL+R + L+ P +
Sbjct: 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL--LERPTS 59
Query: 203 IDILYCEQEVVADDLTAV-ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELK 261
++ V DLT + S L ++ ++ + L SS + EL
Sbjct: 60 GSVI-----VDGQDLTTLSNSELTKARRQIGMIFQHFNL----LSSRTVFGNVALPLELD 110
Query: 262 AIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTN 321
D + + +LA +G D N SGG + RV++ARAL P +LL DE T+
Sbjct: 111 NTPKDEIKRKVTELLALVGLGDK-HDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATS 169
Query: 322 HLDLNAVIWLDNYLQGWKKTL----LIVSHDQSFLDNVCNEIIHLDQQKL 367
LD + L+ + L L+++H+ + +C+ + + +L
Sbjct: 170 ALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 219
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 57.5 bits (139), Expect = 3e-09
Identities = 64/263 (24%), Positives = 113/263 (42%), Gaps = 48/263 (18%)
Query: 149 VENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPP------- 201
V+N ++ + + NL I +GP+G GK+T LR + VP
Sbjct: 8 VKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGEL 67
Query: 202 NIDILYCEQEVVADDLTAVESVLKADVKRT------------ELLAECAKLEAADFSSEQ 249
+ID + +V + D V +L+A V + +A KL ++
Sbjct: 68 DIDGI----DVYSVDTNVV--LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGL---AKN 118
Query: 250 QEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKN---FSGGWRMRVSLARA 306
+++L EI E+ L +G + DR + SGG + R+ +ARA
Sbjct: 119 KKKLDEIVEK---------------SLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARA 163
Query: 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHDQSFLDNVCNEIIHLDQ 364
+ ++PT+LL+DEP + LD A ++N +Q KK T+++V+H V + +
Sbjct: 164 IAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQS 223
Query: 365 QKLYYYKGNYSMFKKMYAQKSKE 387
++ Y +FK + K+K
Sbjct: 224 GRIVEYNTTQEIFKNPQSSKTKR 246
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 57.5 bits (139), Expect = 3e-09
Identities = 57/209 (27%), Positives = 89/209 (42%), Gaps = 11/209 (5%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
++V S S G + + + G G+VG +G GK+TLL +A R P +
Sbjct: 4 LQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTAT 61
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA- 265
Y + +L + + + RTE D + I E L AIGA
Sbjct: 62 YIMRSGAELELYQLSEAERRRLMRTEW--GFVHQNPRDGLRMRVSAGANIGERLMAIGAR 119
Query: 266 --DSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHL 323
+ A+ L + D + FSGG + R+ +AR L P L+ +DEPT L
Sbjct: 120 HYGNIRATAQDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGL 179
Query: 324 DLNAVIWLDNYLQGWKKTL----LIVSHD 348
D++ L + L+G + L +IV+HD
Sbjct: 180 DVSVQARLLDLLRGLVRDLGLAVIIVTHD 208
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 58.1 bits (141), Expect = 3e-09
Identities = 58/230 (25%), Positives = 85/230 (36%), Gaps = 64/230 (27%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHI-------------A 193
I+ EN S + NL I G L+GP+G GKTT L+ I
Sbjct: 2 IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILID 61
Query: 194 SRDLKVPPNI----DILYCEQEV-------VADDLTAVESVLKADVKRTELLAECAKLEA 242
D+ + I Y Q++ VA+++ V +L D +R +
Sbjct: 62 GEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIK---------- 111
Query: 243 ADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302
K E L +G D +E DR SGG + RV
Sbjct: 112 -----------KRADELLDLVGLDPSEYA---------------DRYPHELSGGQQQRVG 145
Query: 303 LARALYIEPTLLLLDEPTNHLD----LNAVIWLDNYLQGWKKTLLIVSHD 348
+ARAL +P +LL+DEP LD + + KT++ V+HD
Sbjct: 146 VARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHD 195
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 56.2 bits (136), Expect = 4e-09
Identities = 46/184 (25%), Positives = 66/184 (35%), Gaps = 27/184 (14%)
Query: 149 VENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYC 208
N + S LF + + G + GPNG GKTTLLR +A L P + ++ +
Sbjct: 3 ARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAG--LLRPDSGEVRWN 60
Query: 209 EQEVVADDLTAVESVL----KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG 264
+ ++L +K E AA Q + I + L A+G
Sbjct: 61 GTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQ----RTIEDALAAVG 116
Query: 265 ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
E D S G + R++LAR L +LDEPT LD
Sbjct: 117 LTGFE-----------------DLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALD 159
Query: 325 LNAV 328
V
Sbjct: 160 KAGV 163
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 57.1 bits (138), Expect = 4e-09
Identities = 58/240 (24%), Positives = 105/240 (43%), Gaps = 24/240 (10%)
Query: 165 ANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE--- 221
N +A G + L+GP+G GK+T+LR + + + I +V + L +
Sbjct: 19 LNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQI-------QVEGEQLYHMPGRN 71
Query: 222 -SVLKADVKRTELLAECAKLEAADFS-SEQQEQLKEIYEE---LKAIGADSAEPRARRIL 276
++ AD K + + F+ + L + E + + AE RA +L
Sbjct: 72 GPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELL 131
Query: 277 AGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQ 336
+G + D SGG + RV++ARAL + P ++L DE T+ LD V + N ++
Sbjct: 132 DMVGLA-DKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIR 190
Query: 337 GW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEF 392
T+L+V+H+ F + + D+ ++ +F+ Q +ER +EF
Sbjct: 191 RLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFR----QPKEERTREF 246
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 56.3 bits (136), Expect = 4e-09
Identities = 55/216 (25%), Positives = 87/216 (40%), Gaps = 38/216 (17%)
Query: 167 LLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTA--VESVL 224
L A G +VGP+G GK+TLL IA + P + +L +V A V +
Sbjct: 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFE--TPQSGRVLINGVDVTAAPPADRPVSMLF 76
Query: 225 KA-------DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILA 277
+ V++ L L+ ++E ++ ++ L +G E R L
Sbjct: 77 QENNLFAHLTVEQNVGLGLSPGLK---LTAEDRQAIEVA---LARVGLAGLEKRLPGEL- 129
Query: 278 GLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD---LNAVIWLDNY 334
SGG R RV+LAR L + +LLLDEP LD ++ L
Sbjct: 130 ----------------SGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLD 173
Query: 335 L-QGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369
L K T+L+V+H + ++ LD ++
Sbjct: 174 LHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAA 209
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 56.9 bits (137), Expect = 5e-09
Identities = 54/193 (27%), Positives = 82/193 (42%), Gaps = 16/193 (8%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
N NL + G L+GP+G GKTT LR I +R + P V L + +
Sbjct: 22 NVNLDVQRGTVNALIGPSGCGKTTFLRAI-NRMHDLTPG-------ARVTGRILLDGQDI 73
Query: 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA---DSAEPRARRILAGLG 280
V + + + LK G D A R L G
Sbjct: 74 YGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAA 133
Query: 281 FSRAMQDR---ATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG 337
++DR SGG + R+ +ARAL +EP +LL+DEPT+ LD + +++ +
Sbjct: 134 LWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTD 193
Query: 338 WKK--TLLIVSHD 348
KK T++IV+H+
Sbjct: 194 LKKVTTIIIVTHN 206
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 57.6 bits (140), Expect = 5e-09
Identities = 57/244 (23%), Positives = 99/244 (40%), Gaps = 50/244 (20%)
Query: 147 IKVENFSISAKGNDLFVNA----NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN 202
++V+N S+S + V A + + G G+VG +G GK+ L + I L P
Sbjct: 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIM-GLLPKPNA 60
Query: 203 I----DILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQ-------- 250
+IL+ +++ L K K+ + + Q
Sbjct: 61 RIVGGEILFDGKDL-----------LSLSEKELR------KIRGKEIAMIFQDPMTSLNP 103
Query: 251 -----EQLKEIYEE-LKAIGADSAEPRARRILAGLGFSRAMQDRATKN----FSGGWRMR 300
+Q+ E+ K + A+ RA +L +G +R K+ SGG R R
Sbjct: 104 VMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDP--ERRLKSYPHELSGGMRQR 161
Query: 301 VSLARALYIEPTLLLLDEPTNHLDL---NAVIWLDNYLQ-GWKKTLLIVSHDQSFLDNVC 356
V +A AL + P LL+ DEPT LD+ ++ L LQ L++++HD + +
Sbjct: 162 VMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIA 221
Query: 357 NEII 360
+ +
Sbjct: 222 DRVA 225
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 56.4 bits (136), Expect = 6e-09
Identities = 59/229 (25%), Positives = 99/229 (43%), Gaps = 25/229 (10%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTT---LLRHIASRDLKVPPNI 203
+ +N + + KG + + +L + +G GL+GPNG GKTT ++ I RD
Sbjct: 4 LTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD------- 56
Query: 204 DILYCEQEVVADDLTAVESVLKADVKR-TELLAECAKLEAADFSS-EQQEQLKEIYEELK 261
++ DD L A +R L + EA+ F + L + +
Sbjct: 57 -----AGNIIIDDEDISLLPLHARARRGIGYLPQ----EASIFRRLSVYDNLMAVLQIRD 107
Query: 262 AIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTN 321
+ A+ E RA ++ ++D ++ SGG R RV +ARAL P +LLDEP
Sbjct: 108 DLSAEQREDRANELMEEFHIEH-LRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFA 166
Query: 322 HLDLNAVIWLDNYLQGWKKT---LLIVSHDQSFLDNVCNEIIHLDQQKL 367
+D +VI + ++ + + +LI H+ VC + Q L
Sbjct: 167 GVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHL 215
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 56.9 bits (137), Expect = 7e-09
Identities = 63/223 (28%), Positives = 95/223 (42%), Gaps = 28/223 (12%)
Query: 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNID 204
V I + S S + + + IA G +GL+GPNG GK+T+ R + + P+
Sbjct: 3 VAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGM---ISPDRG 59
Query: 205 ILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG 264
+ +VL V LA A F + E + E L G
Sbjct: 60 KI---------------TVLGEPVPSRARLARVAIGVVPQFDNLDPE--FTVRENLLVFG 102
Query: 265 ---ADSAEPRARRILAGLGFSR--AMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEP 319
S I + L F+R + D SGG + R++LARAL +P LL+LDEP
Sbjct: 103 RYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEP 162
Query: 320 TNHLDLNA--VIWLD-NYLQGWKKTLLIVSHDQSFLDNVCNEI 359
T LD +A +IW L KT+L+ +H + +C+ +
Sbjct: 163 TTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRL 205
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 57.7 bits (140), Expect = 8e-09
Identities = 50/199 (25%), Positives = 86/199 (43%), Gaps = 42/199 (21%)
Query: 169 IANGRRYGLVGPNGHGKTTLLRHIASR---DLKVPPNIDILYCEQEVVADDLTAVESVLK 225
I +G G++GPNG GKTT ++ +A D ++ + Y Q + D VE +L+
Sbjct: 364 IYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLR 423
Query: 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAM 285
+ ++ + ++ F +E I+ L +
Sbjct: 424 SAIR--------SAFGSSYFKTE--------------------------IVKPLNLEDLL 449
Query: 286 QDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD----LNAVIWLDNYLQGWKKT 341
+R SGG RV++A AL E L LLDEP+ +LD + + +++ +KT
Sbjct: 450 -ERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKT 508
Query: 342 LLIVSHDQSFLDNVCNEII 360
L+V HD +D V + +I
Sbjct: 509 ALVVDHDIYMIDYVSDRLI 527
Score = 52.7 bits (127), Expect = 3e-07
Identities = 60/225 (26%), Positives = 104/225 (46%), Gaps = 35/225 (15%)
Query: 171 NGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKR 230
G+ G++GPNG GK+T L+ I + +LK PN+ +D + + V+K +
Sbjct: 99 PGKVVGILGPNGIGKSTALK-ILAGELK--PNL----GRY----EDPPSWDEVIKR-FRG 146
Query: 231 TELLAECAKLEAADFSSEQQEQ--------LK-EIYEELKAIGADSAEPRARRILAGLGF 281
TEL KL + + + Q +K ++ E LK + + ++ LG
Sbjct: 147 TELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERG---KFDEVVERLGL 203
Query: 282 SRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD----LNAVIWLDNYLQG 337
+ DR SGG RV++A AL + + DEP+++LD LNA + +
Sbjct: 204 ENVL-DRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAED 262
Query: 338 WKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYA 382
K +++V HD + LD + ++ +H+ LY G Y + K +
Sbjct: 263 -GKYVIVVEHDLAVLDYL-SDFVHI----LYGEPGVYGVVSKPKS 301
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 56.7 bits (137), Expect = 9e-09
Identities = 54/183 (29%), Positives = 84/183 (45%), Gaps = 30/183 (16%)
Query: 177 LVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV--VADDLTAVESVLKADVKRTELL 234
L+GP+G GKTTLLR +A + P + I+ ++V V L + V ++
Sbjct: 1 LLGPSGCGKTTLLRLLAG--FEQPDSGSIMLDGEDVTNVPPHLRHINMVFQS-------- 50
Query: 235 AECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATK--- 291
A F E+ + LK AE R+L L + +++ A +
Sbjct: 51 -------YALFPHMTVEE--NVAFGLKMRKVPRAE-IKPRVLEALRLVQ-LEEFADRKPH 99
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK----TLLIVSH 347
SGG + RV+LARAL +P +LLLDEP + LD + L+ ++ T + V+H
Sbjct: 100 QLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTH 159
Query: 348 DQS 350
DQ
Sbjct: 160 DQE 162
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 56.0 bits (136), Expect = 9e-09
Identities = 59/219 (26%), Positives = 96/219 (43%), Gaps = 30/219 (13%)
Query: 143 NAVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIAS-RDLKVPP 201
I+V + ++ + NL I + L+GP+G GK+TLLR + DL
Sbjct: 4 KIPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDL---- 59
Query: 202 NIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQL--KEIYEE 259
I E EV+ D +++ V EL + F Q+ IY+
Sbjct: 60 -IPGARVEGEVLLDG----KNIYDPKVDVVELRRRVGMV----F---QKPNPFPMSIYDN 107
Query: 260 ----LKAIGADSAE--PRARRILAGLGFSRAMQDRATKN---FSGGWRMRVSLARALYIE 310
L+ G E L ++DR K+ SGG + R+ +ARAL ++
Sbjct: 108 VAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVK 167
Query: 311 PTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSH 347
P +LL+DEPT+ LD + + ++ + KK T++IV+H
Sbjct: 168 PEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTH 206
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 56.1 bits (136), Expect = 9e-09
Identities = 59/208 (28%), Positives = 88/208 (42%), Gaps = 61/208 (29%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTT-------LLRH------IA 193
+ EN + S K + + +L + +G GL+GPNG GKTT L+R +
Sbjct: 5 LVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLD 64
Query: 194 SRDL-KVPPN----IDILYCEQE-------VVADDLTAVESVLKADVKRTELLAECAKLE 241
D+ K+P + + I Y QE V D++ AV + + D+K+ E
Sbjct: 65 DEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAE--------- 115
Query: 242 AADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301
++E+L + EE + L S+A SGG R RV
Sbjct: 116 -------RKEELDALLEEFH--------------ITHLRDSKAYS------LSGGERRRV 148
Query: 302 SLARALYIEPTLLLLDEPTNHLDLNAVI 329
+ARAL P +LLDEP +D AVI
Sbjct: 149 EIARALAANPKFILLDEPFAGVDPIAVI 176
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 56.2 bits (136), Expect = 9e-09
Identities = 55/211 (26%), Positives = 83/211 (39%), Gaps = 33/211 (15%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
+++ + G + NL + +G ++GP+G GKTTLL IA VP +
Sbjct: 2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGF---VPYQHGSI 58
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD 266
+ + V V + + LL + F + L +
Sbjct: 59 TLDGKPVEGPGAERGVVFQNE----GLLPWRNVQDNVAFGLQ-----------LAGVEKM 103
Query: 267 SAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD-- 324
A ++L +G A + R SGG R RV +ARAL P LLLLDEP LD
Sbjct: 104 QRLEIAHQMLKKVGLEGAEK-RYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAF 162
Query: 325 -------LNAVIWLDNYLQGWKKTLLIVSHD 348
L +W Q K +L+++HD
Sbjct: 163 TREQMQTLLLKLW-----QETGKQVLLITHD 188
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 55.9 bits (136), Expect = 9e-09
Identities = 49/166 (29%), Positives = 65/166 (39%), Gaps = 57/166 (34%)
Query: 177 LVGPNGHGKTTLLRHIA-------------SRDL-KVPPN----IDILYCEQEV-VADDL 217
L+G NG GKTTLL+ I D+ +PP+ + I Y + + L
Sbjct: 34 LLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRL 93
Query: 218 TAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYE---ELKAIGADSAEPRARR 274
T VE L LL A Q+ L+E+YE LK R
Sbjct: 94 T-VEENL--------LLG----AYARRDKEAQERDLEEVYELFPRLKER---------RN 131
Query: 275 ILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPT 320
AG SGG + +++ARAL P LLLLDEP+
Sbjct: 132 QRAG-------------TLSGGEQQMLAIARALMSRPKLLLLDEPS 164
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 57.4 bits (139), Expect = 1e-08
Identities = 67/298 (22%), Positives = 106/298 (35%), Gaps = 81/298 (27%)
Query: 126 FTI--SQMEKTGGQLAALENAVDIKVENFSISAKGNDLFV--NANLLIANGRRYGLVGPN 181
FT+ S EK G A D++ N + G D + +L+I G LVG +
Sbjct: 308 FTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRS 367
Query: 182 GHGKTTL---------------------LRHIASRDLKVPPNIDILYCEQEVVADDLTAV 220
G GK+TL L L+ + Q+VV + T
Sbjct: 368 GSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRR----QVALVSQDVVLFNDTIA 423
Query: 221 ESVL---KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILA 277
++ R E+ A A DF + L IG +
Sbjct: 424 NNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDT------PIGENGV--------- 468
Query: 278 GLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD------LNAVIWL 331
SGG R R+++ARAL + +L+LDE T+ LD + A L
Sbjct: 469 --------------LLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAA--L 512
Query: 332 DNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQK---------LYYYKGNYSMFKKM 380
+ +QG +T L+++H S ++ + I+ +D + L G Y+ M
Sbjct: 513 ERLMQG--RTTLVIAHRLSTIEKA-DRIVVMDDGRIVERGTHNELLARNGLYAQLHNM 567
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 57.0 bits (138), Expect = 1e-08
Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 287 DRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVI----WLDNYLQGWKKTL 342
DR SGG + RV+LARAL +EP +LLLDEP LD WL + K T
Sbjct: 131 DRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTS 190
Query: 343 LIVSHDQSFLDNVCNEIIHLDQ 364
+ V+HDQ V + ++ + Q
Sbjct: 191 VFVTHDQEEAMEVADRVVVMSQ 212
Score = 38.1 bits (89), Expect = 0.009
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA 193
I++ N S + + +L I +G+ L+GP+G GKTTLLR IA
Sbjct: 3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIA 49
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 55.2 bits (134), Expect = 1e-08
Identities = 44/175 (25%), Positives = 67/175 (38%), Gaps = 26/175 (14%)
Query: 161 LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAV 220
LF + + G + GPNG GKT+LLR +A L P ++L+ + +
Sbjct: 16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAG--LARPDAGEVLWQGEPIRRQRDEYH 73
Query: 221 ESVL----KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRIL 276
+ +L + +K TEL A E F + + L
Sbjct: 74 QDLLYLGHQPGIK-TELTAL----ENLRFYQ--------------RLHGPGDDEALWEAL 114
Query: 277 AGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWL 331
A +G + D + S G + RV+LAR L +LDEP +D V L
Sbjct: 115 AQVGLAGFE-DVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARL 168
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 57.7 bits (139), Expect = 1e-08
Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 20/192 (10%)
Query: 172 GRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLT-AVESVLKADVKR 230
G +GL+G NG GKTT + +L + V + D T A +S+L
Sbjct: 1965 GECFGLLGVNGAGKTTTFK--------------MLTGDTTVTSGDATVAGKSILTNISDV 2010
Query: 231 TELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRAT 290
+ + C + +A D +E L +Y L+ + A+ E A + LG S DR
Sbjct: 2011 HQNMGYCPQFDAIDDLLTGREHLY-LYARLRGVPAEEIEKVANWSIQSLGLS-LYADRLA 2068
Query: 291 KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSH 347
+SGG + ++S A AL P L+LLDEPT +D A L N + + +++ SH
Sbjct: 2069 GTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
Query: 348 DQSFLDNVCNEI 359
+ +C +
Sbjct: 2129 SMEECEALCTRL 2140
Score = 39.6 bits (92), Expect = 0.004
Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 21/197 (10%)
Query: 176 GLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLA 235
+G NG GKTT L + +PP + + + +L AV L + L
Sbjct: 960 AFLGHNGAGKTTTLSILTGL---LPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFH 1016
Query: 236 ECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSG 295
E F Y +LK + A+ +L G + A ++ SG
Sbjct: 1017 HLTVAEHILF-----------YAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEA-QDLSG 1064
Query: 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNA--VIW--LDNYLQGWKKTLLIVSHDQSF 351
G + ++S+A A + +++LDEPT+ +D + IW L Y G +T+++ +H
Sbjct: 1065 GMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSG--RTIIMSTHHMDE 1122
Query: 352 LDNVCNEIIHLDQQKLY 368
D + + I + Q +LY
Sbjct: 1123 ADLLGDRIAIISQGRLY 1139
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 55.7 bits (135), Expect = 1e-08
Identities = 51/204 (25%), Positives = 72/204 (35%), Gaps = 60/204 (29%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
+ I G GLVG +G GK+TL R I
Sbjct: 31 GVSFSIKEGETLGLVGESGCGKSTLGRLI------------------------------- 59
Query: 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRI---LAGLG 280
LE I E K I S E R R+ L +G
Sbjct: 60 --------------LGLEEPTSGE--------ILFEGKDITKLSKEERRERVLELLEKVG 97
Query: 281 FSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK 340
R SGG R R+ +ARAL + P L++ DEP + LD++ + N L+ ++
Sbjct: 98 LPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE 157
Query: 341 ----TLLIVSHDQSFLDNVCNEII 360
T L +SHD S + + + I
Sbjct: 158 ELGLTYLFISHDLSVVRYISDRIA 181
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 54.6 bits (132), Expect = 2e-08
Identities = 55/223 (24%), Positives = 98/223 (43%), Gaps = 25/223 (11%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
++VEN + + + + G +GL+GPNG GKTT +R I I+
Sbjct: 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMIL----------GII 50
Query: 207 YC-EQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQ-QEQLKEIYEELKAIG 264
EV+ D + + A R L E E + + +QL + +LK +
Sbjct: 51 LPDSGEVLFDG----KPLDIAARNRIGYLPE----ERGLYPKMKVIDQLVYL-AQLKGLK 101
Query: 265 ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
+ A R L L S ++ + S G + +V A+ +P LL+LDEP + LD
Sbjct: 102 KEEARRRIDEWLERLELS-EYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLD 160
Query: 325 -LNAVIWLD--NYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQ 364
+N + D L KT+++ +H ++ +C+ ++ L++
Sbjct: 161 PVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNK 203
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 55.4 bits (133), Expect = 2e-08
Identities = 60/214 (28%), Positives = 91/214 (42%), Gaps = 39/214 (18%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL--------YCEQEVVAD 215
N + I +G ++GPNG GK+TLLR + SR L P + + Y +EV
Sbjct: 25 NLTVEIPDGHFTAIIGPNGCGKSTLLRTL-SR-LMTPAHGHVWLDGEHIQHYASKEVARR 82
Query: 216 -DLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARR 274
L A + D+ EL+A F+ ++E + + + ++A G
Sbjct: 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITH------- 135
Query: 275 ILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNY 334
+ D++ SGG R R +A L E ++LLDEPT LD++ I L
Sbjct: 136 ----------LADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLEL 185
Query: 335 L------QGWKKTLLIVSHDQSFLDNVCNEIIHL 362
L +G+ TL V HD L+ C HL
Sbjct: 186 LSELNREKGY--TLAAVLHD---LNQACRYASHL 214
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 56.5 bits (137), Expect = 2e-08
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK---TLLIVSHDQS 350
SGG R R++LARALY +P L++LDEP ++LD L + K T+++++H S
Sbjct: 474 SGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS 533
Query: 351 FLDNV 355
L +V
Sbjct: 534 ALASV 538
Score = 31.9 bits (73), Expect = 1.1
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 146 DIKVENFSISAKGNDLFV--NANLLIANGRRYGLVGPNGHGKTTLLRHI 192
+ VE + + G + + + G G++GP+G GK+TL R +
Sbjct: 334 ALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLL 382
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 55.2 bits (133), Expect = 3e-08
Identities = 55/206 (26%), Positives = 99/206 (48%), Gaps = 33/206 (16%)
Query: 172 GRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV-------- 223
GR G +GPNG GK+T ++ I + L P + + C ++V+ + ++
Sbjct: 28 GRIVGFLGPNGAGKSTTMK-IITGYLP-PDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNP 85
Query: 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR 283
L D+ E L A + +Q +++E+ E L GL R
Sbjct: 86 LYLDMYVREYLQFIAGIYGMKGQLLKQ-RVEEMIE-----------------LVGL---R 124
Query: 284 AMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQ--GWKKT 341
Q + S G+R RV LA+AL +P +L+LDEPT LD N ++ + N ++ G KT
Sbjct: 125 PEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKT 184
Query: 342 LLIVSHDQSFLDNVCNEIIHLDQQKL 367
+++ +H ++ +C+ +I +++ K+
Sbjct: 185 IILSTHIMQEVEAICDRVIIINKGKI 210
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 54.1 bits (131), Expect = 3e-08
Identities = 50/221 (22%), Positives = 96/221 (43%), Gaps = 41/221 (18%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
+ +L + G +G++G +G GK+TL+R I L+ P + +L ++
Sbjct: 23 DVSLSVPKGEIFGIIGRSGAGKSTLIRCING--LERPTSGSVLVDGTDLT---------- 70
Query: 224 LKADVKRTELLAECAKLEAADFSSEQQEQL---KEIYEE----LKAIGADSAEPRARRIL 276
+ EL ++ F Q L + ++E L+ G AE R+L
Sbjct: 71 ---LLSGKELRKARRRI-GMIF---QHFNLLSSRTVFENVALPLEIAGVPKAE-IEERVL 122
Query: 277 AGLGFSRAMQDRAT---KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDN 333
L ++D+A SGG + RV +ARAL P +LL DE T+ LD +
Sbjct: 123 ELLELV-GLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETT---QS 178
Query: 334 YLQGWKK-------TLLIVSHDQSFLDNVCNEIIHLDQQKL 367
L + T+++++H+ + +C+ + +++ ++
Sbjct: 179 ILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEV 219
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 53.4 bits (129), Expect = 4e-08
Identities = 57/222 (25%), Positives = 97/222 (43%), Gaps = 24/222 (10%)
Query: 149 VENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYC 208
++N S + + NL I G+ Y ++G +G GK+TLL I L+ + +
Sbjct: 1 LKNISKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGL--LEKFDSGQVYLN 58
Query: 209 EQEVVADDLTAVESVLKADVKRTE---LLAECAKLEAADFSSEQQEQLKEIYEELKAIGA 265
QE + S + +R + L A +E +E E+ ++ + K +
Sbjct: 59 GQETP-----PLNSKKASKFRREKLGYLFQNFALIE-----NETVEENLDLGLKYKKLSK 108
Query: 266 DSAEPRARRILAGLGFSRAMQDRATKNFS--GGWRMRVSLARALYIEPTLLLLDEPTNHL 323
+ + L +G + K + GG + RV+LARA+ P L+L DEPT L
Sbjct: 109 KEKREKKKEALEKVGLN---LKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSL 165
Query: 324 DL---NAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHL 362
D + V+ L L KT++IV+HD + + +I L
Sbjct: 166 DPKNRDEVLDLLLELNDEGKTIIIVTHDPE-VAKQADRVIEL 206
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 54.9 bits (132), Expect = 4e-08
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 20/192 (10%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
+A+L IA G + ++G +G GK+T +R + L P I + +++ V
Sbjct: 11 DADLAIAKGEIFVIMGLSGSGKSTTVRML--NRLIEPTAGQIF-----IDGENIMKQSPV 63
Query: 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR 283
+V+R ++ + A F Q + EL + +A +L +G
Sbjct: 64 ELREVRRKKIGMVFQQF--ALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEE 121
Query: 284 AMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD-------LNAVIWLDNYLQ 336
+ R SGG + RV LARAL EP +LL+DE + LD + + L LQ
Sbjct: 122 -YEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQ 180
Query: 337 GWKKTLLIVSHD 348
KT++ ++HD
Sbjct: 181 ---KTIVFITHD 189
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 54.0 bits (130), Expect = 6e-08
Identities = 50/186 (26%), Positives = 77/186 (41%), Gaps = 28/186 (15%)
Query: 147 IKVENFSISAKGN-DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDI 205
I+ + S G+ + N N + R ++GPNG GK+TL RH I
Sbjct: 4 IETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNG----------I 53
Query: 206 LYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG- 264
L V L E + K +++ E K F + + E+ A G
Sbjct: 54 LKPTSGSV---LIRGEPITKENIR------EVRKFVGLVFQNPDDQIFSPTVEQDIAFGP 104
Query: 265 ------ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDE 318
++ R L LG ++DR + SGG + RV++A + +EP +L+LDE
Sbjct: 105 INLGLDEETVAHRVSSALHMLGLEE-LRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDE 163
Query: 319 PTNHLD 324
PT LD
Sbjct: 164 PTAGLD 169
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 55.1 bits (133), Expect = 6e-08
Identities = 63/262 (24%), Positives = 114/262 (43%), Gaps = 59/262 (22%)
Query: 132 EKTGGQLAALENAV-DIKVENFSIS-AKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLL 189
+ L N DI + + S S G+++ + +L I + +VG +G GK+TL
Sbjct: 458 FINKKKRTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLA 517
Query: 190 R-------------HIASRDLKVPPNID-------ILYCEQEVVADDLTAVESVL---KA 226
+ + LK +ID I Y QE + +E++L K
Sbjct: 518 KLLVGFFQARSGEILLNGFSLK---DIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKE 574
Query: 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQ 286
+V + E+ A C ++ EI ++++ + LG+ +
Sbjct: 575 NVSQDEIWAAC--------------EIAEIKDDIENMP--------------LGYQTELS 606
Query: 287 DRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD-LNAVIWLDNYLQGWKKTLLIV 345
+ + + SGG + R++LARAL + +L+LDE T++LD + ++N L KT++ V
Sbjct: 607 EEGS-SISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFV 665
Query: 346 SHDQSFLDNVCNEIIHLDQQKL 367
+H S ++II LD K+
Sbjct: 666 AHRLSVAKQS-DKIIVLDHGKI 686
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 53.8 bits (130), Expect = 6e-08
Identities = 59/249 (23%), Positives = 99/249 (39%), Gaps = 53/249 (21%)
Query: 113 KKGGQGHSELGDNFTISQMEKTGGQLAALENAVDIKVENFSISAKGNDLFVNANLLIANG 172
K + L + ++ K GQ + + + + ++FV
Sbjct: 12 KNPQKAFKLLAKGKSKEEILKKTGQTVGVNDV------SLDVRE--GEIFV--------- 54
Query: 173 RRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVA----DDLTAVESVLKADV 228
++G +G GK+TLLR I +R + P + + + +A +L + + V
Sbjct: 55 ----IMGLSGSGKSTLLRCI-NR--LIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMV 107
Query: 229 -KRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILA--GLGFSRAM 285
+ LL LE F E Q + EE RA L GL
Sbjct: 108 FQSFALLPHRTVLENVAFGLEVQGVPRAEREE-----------RAAEALELVGLE---GW 153
Query: 286 QDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNY-----LQG-WK 339
+ + SGG + RV LARAL ++P +LL+DE + LD +I + LQ +
Sbjct: 154 EHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALD--PLIRREMQDELLRLQAELQ 211
Query: 340 KTLLIVSHD 348
KT++ ++HD
Sbjct: 212 KTIVFITHD 220
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 54.3 bits (131), Expect = 6e-08
Identities = 52/222 (23%), Positives = 86/222 (38%), Gaps = 46/222 (20%)
Query: 165 ANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224
A+ + + G +G GKTTL+R IA L P E E+V +
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAG--LTRPD-------EGEIVLNG-------- 58
Query: 225 KADVKRTELLAECAKLEAADFSSEQQE-----QLKEIYEELKAIG--------ADSAEPR 271
L + K E++ Q ++ L G A +E R
Sbjct: 59 -------RTLFDSRK--GIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERR 109
Query: 272 AR--RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL---N 326
R++ LG + R SGG + RV++ RAL P LLL+DEP LD
Sbjct: 110 ISFERVIELLGIGHLLG-RLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKY 168
Query: 327 AVI-WLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
++ +L+ + +L VSH + + + ++ L+ ++
Sbjct: 169 EILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRV 210
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 53.0 bits (128), Expect = 6e-08
Identities = 56/234 (23%), Positives = 103/234 (44%), Gaps = 32/234 (13%)
Query: 146 DIKVENFSIS-AKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV--PPN 202
+I+ EN + S + + + N I G +VGP G GKTTL+ + ++ P
Sbjct: 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLL----MRFYDPQK 57
Query: 203 IDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA 262
IL ++ ++ S++ V + L +E +E+ E K
Sbjct: 58 GQILIDGIDIRDISRKSLRSMI-GVVLQDTFLFSGTIMENIRLGRPNATD-EEVIEAAKE 115
Query: 263 IGADSAEPRARRILAGL--GFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPT 320
GA + L G+ + + N S G R +++ARA+ +P +L+LDE T
Sbjct: 116 AGAH-------DFIMKLPNGYDTVLGENG-GNLSQGERQLLAIARAMLRDPKILILDEAT 167
Query: 321 NHLDL-------NAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
+++D A L+ ++G +T +I++H S + N ++I+ LD K+
Sbjct: 168 SNIDTETEKLIQEA---LEKLMKG--RTSIIIAHRLSTIKNA-DKILVLDDGKI 215
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 54.9 bits (132), Expect = 7e-08
Identities = 61/232 (26%), Positives = 101/232 (43%), Gaps = 47/232 (20%)
Query: 168 LIANGRRYGLVGPNGHGKTTLLRHIASR-------------DLKVPPNIDILYCEQEVVA 214
+ + G ++GP+G GK+TLL +A R + K P IL V
Sbjct: 90 MASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRK--PTKQILKRTGFVTQ 147
Query: 215 DDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARR 274
DD+ L + E L C+ L ++Q+ K + A+S
Sbjct: 148 DDI------LYPHLTVRETLVFCSLLRLPKSLTKQE----------KILVAES------- 184
Query: 275 ILAGLGFSRAMQDRATKNF----SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIW 330
+++ LG ++ +F SGG R RVS+A + I P+LL+LDEPT+ LD A
Sbjct: 185 VISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYR 244
Query: 331 LDNYLQGWK---KTLLIVSHD-QSFLDNVCNEIIHLDQQK-LYYYKGNYSMF 377
L L KT++ H S + + + ++ L + + L++ KG+ +M
Sbjct: 245 LVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 54.3 bits (131), Expect = 1e-07
Identities = 55/214 (25%), Positives = 98/214 (45%), Gaps = 33/214 (15%)
Query: 166 NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225
NL + G LVGP+G GK+TL + + P + IL ++ V
Sbjct: 360 NLTVRPGETVALVGPSGAGKSTLFQLLLR--FYDPQSGRIL-------------LDGVDL 404
Query: 226 ADVKRTELLAECAKL--EAADFSSEQQEQLK----EIYEELKAIGADSAEPRARRILAGL 279
+ EL A A + + F++ E ++ + +E A +A A ++ L
Sbjct: 405 RQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAA--HAHEFISAL 462
Query: 280 --GFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL---NAV-IWLDN 333
G+ + +R SGG R R+++ARA+ + +LLLDE T+ LD V L+
Sbjct: 463 PEGYDTYLGERG-VTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALET 521
Query: 334 YLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
++G +T LI++H + + + I+ +DQ ++
Sbjct: 522 LMKG--RTTLIIAHRLATVLK-ADRIVVMDQGRI 552
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 53.7 bits (129), Expect = 1e-07
Identities = 58/210 (27%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 158 GNDLFVNA-NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD 216
G+ VN + +A+G +GL+GPNG GK+T+ R I I +L
Sbjct: 52 GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLG--------- 102
Query: 217 LTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRIL 276
V + + R ++ + L+ +F+ + + Y + ++ P
Sbjct: 103 -VPVPARARLARARIGVVPQFDNLDL-EFTVRENLLVFGRYFGMSTREIEAVIPSL---- 156
Query: 277 AGLGFSR--AMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA--VIW-- 330
L F+R + D + SGG + R++LARAL +P LL+LDEPT LD +A +IW
Sbjct: 157 --LEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWER 214
Query: 331 LDNYL-QGWKKTLLIVSHDQSFLDNVCNEI 359
L + L +G KT+L+ +H + +C+ +
Sbjct: 215 LRSLLARG--KTILLTTHFMEEAERLCDRL 242
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 52.8 bits (127), Expect = 1e-07
Identities = 49/223 (21%), Positives = 84/223 (37%), Gaps = 52/223 (23%)
Query: 152 FSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR----DLKVP-PNIDIL 206
F++ +G I+ G++GPNG GKTT ++ +A + + +
Sbjct: 13 FTLEVEGGS--------ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVS 64
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD 266
Y Q + AD V +L + K F +E
Sbjct: 65 YKPQYIKADYEGTVRDLLSSITKD--------FYTHPYFKTE------------------ 98
Query: 267 SAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD-- 324
I L + + DR SGG RV++A L + + LLDEP+ +LD
Sbjct: 99 --------IAKPLQIEQIL-DREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVE 149
Query: 325 --LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQ 365
L A + + + +KT +V HD +D + + +I + +
Sbjct: 150 QRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGE 192
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 52.4 bits (126), Expect = 1e-07
Identities = 60/216 (27%), Positives = 99/216 (45%), Gaps = 32/216 (14%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
N+ I+ G LVGP+G GK+TLL+ I +L P + I Q+V
Sbjct: 19 GINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDV----------- 65
Query: 224 LKADVKRTELLAECAKLEAADFSSEQQEQL---KEIYEE----LKAIGADSAEPRAR--R 274
+D++ + L Q +L + +YE L+ G E R R
Sbjct: 66 --SDLRGRAI----PYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPA 119
Query: 275 ILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNY 334
L +G S + + SGG + RV++ARA+ PT+L+ DEPT +LD + + N
Sbjct: 120 ALELVGLSHKHRALPAE-LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNL 178
Query: 335 LQGWKK---TLLIVSHDQSFLDNVCNEIIHLDQQKL 367
L+ K T+++ +H + +D + +I L++ KL
Sbjct: 179 LKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 52.4 bits (126), Expect = 1e-07
Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 33/192 (17%)
Query: 179 GPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECA 238
GP+G GK+TLL+ +AS L P + +L+ +++ S LK ++ R ++ + CA
Sbjct: 40 GPSGCGKSTLLKIVAS--LISPTSGTLLFEGEDI---------STLKPEIYRQQV-SYCA 87
Query: 239 KLEAADFSSEQQEQLKEIYEELKAIGADSAEPRA-RRILAGLGFSRAMQDRATKNFSGGW 297
+ F + L ++ I +P L + + SGG
Sbjct: 88 QTPTL-FGDTVYDNLIFPWQ----IRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGE 142
Query: 298 RMRVSLARALYIEPTLLLLDEPTNHLD------LNAVIWLDNYLQGWKKTLLIVSHDQSF 351
+ R+SL R L P +LLLDE T+ LD +N +I Y++ +L V+HD+
Sbjct: 143 KQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEII--HRYVREQNIAVLWVTHDK-- 198
Query: 352 LDNVCNEIIHLD 363
+EI H D
Sbjct: 199 -----DEINHAD 205
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 53.4 bits (129), Expect = 1e-07
Identities = 34/95 (35%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 260 LKAIGADSAEPRAR-RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDE 318
LK G AE R + +A L + +R SGG R RV+LARAL +P + LLDE
Sbjct: 100 LKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDE 159
Query: 319 PTNHLD--LNAVI--WLDNYLQGWKKTLLIVSHDQ 349
P ++LD L ++ + + T + V+HDQ
Sbjct: 160 PLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ 194
Score = 48.4 bits (116), Expect = 5e-06
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA 193
++++N S ++ + NL I +G L+GP+G GK+TLLR IA
Sbjct: 4 LELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIA 50
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 52.5 bits (127), Expect = 1e-07
Identities = 51/164 (31%), Positives = 69/164 (42%), Gaps = 53/164 (32%)
Query: 176 GLVGPNGHGKTTLLRHIA-------------SRDL-KVPPN----IDILYCEQEV-VADD 216
GL+GPNG GKTT I +D+ K+P + + I Y QE +
Sbjct: 30 GLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK 89
Query: 217 LTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQ-LKEIYEELKAIGADSAEPRARRI 275
LT E++L A LE S +++E+ L+E+ EE
Sbjct: 90 LTVEENIL-------------AVLEIRGLSKKEREEKLEELLEEFH-------------- 122
Query: 276 LAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEP 319
+ L S+A SGG R RV +ARAL P LLLDEP
Sbjct: 123 ITHLRKSKASS------LSGGERRRVEIARALATNPKFLLLDEP 160
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 52.2 bits (125), Expect = 1e-07
Identities = 59/226 (26%), Positives = 99/226 (43%), Gaps = 60/226 (26%)
Query: 166 NLLIANGRRYGLVGPNGHGKTTLLRHIA------SRDLKV--------PPN---IDILYC 208
+L +A+G ++GP+G GK+TLL IA S +KV P + +L+
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77
Query: 209 EQEVVADDLTAVESV---LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA 265
E + A LT +++ L +K ++EQQE++ +
Sbjct: 78 ENNLFAH-LTVRQNIGLGLHPGLK---------------LNAEQQEKVVDA--------- 112
Query: 266 DSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD- 324
A+++ G+ DR + SGG R RV+LAR L +LLLDEP + LD
Sbjct: 113 ------AQQV--GIA---DYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDP 161
Query: 325 ---LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
+ + ++TLL+V+H S + ++I + Q K+
Sbjct: 162 LLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKI 207
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 52.9 bits (127), Expect = 1e-07
Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 27/224 (12%)
Query: 166 NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225
N+ I G ++G NG GK+TL +++ LK P + IL+ + +
Sbjct: 26 NINIKKGEVTAILGGNGAGKSTLFQNLNGI-LK-PSSGRILFDGKPI------------- 70
Query: 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELK------AIGADSAEPRARRILAGL 279
D R L+ + + Q +Y+++ + D R L
Sbjct: 71 -DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRT 129
Query: 280 GFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVI----WLDNYL 335
G ++D+ T S G + RV++A L +EP +L+LDEPT LD V L
Sbjct: 130 GIEH-LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQ 188
Query: 336 QGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKK 379
+ T++I +HD + C+ + + + ++ +F +
Sbjct: 189 KELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 52.7 bits (126), Expect = 1e-07
Identities = 47/199 (23%), Positives = 93/199 (46%), Gaps = 29/199 (14%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLL----RHIASRDLKVPPNIDILYCEQEVVADDLTA 219
+ + I N +G++GP+G GK+TLL R I D K+ + +LY +++ D
Sbjct: 28 DITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87
Query: 220 VESVLKADVKRTELLAECAKLEAADF-----SSEQQEQLKEIYEELKAIGADSAEPRARR 274
+ + ++ + + + +++ ++K+I EE
Sbjct: 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEE--------------- 132
Query: 275 ILAGLGFSRAMQDR---ATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWL 331
L +G + + DR SGG + R+++ARAL ++P +LL+DEPT+ +D+ +
Sbjct: 133 CLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAI 192
Query: 332 DNYLQGWKK--TLLIVSHD 348
+ + K ++IVSH+
Sbjct: 193 EKLITELKNEIAIVIVSHN 211
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 53.1 bits (128), Expect = 1e-07
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 260 LKAIGADSAEPRAR--RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLD 317
LK G AE R +L +G + + + SGG + RV+LARAL P LLLLD
Sbjct: 101 LKNRGMGRAEVAERVAELLDLVGLPGS-ERKYPGQLSGGQQQRVALARALATSPGLLLLD 159
Query: 318 EPTNHLDLNAVIWLDNYLQGWKK----TLLIVSHDQ 349
EP + LD L ++ ++ T ++V+HDQ
Sbjct: 160 EPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ 195
Score = 34.6 bits (80), Expect = 0.13
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDL 197
+ +L + G L+GP+G GKTTLLR IA +
Sbjct: 22 DISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER 55
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 52.1 bits (126), Expect = 1e-07
Identities = 46/164 (28%), Positives = 66/164 (40%), Gaps = 52/164 (31%)
Query: 176 GLVGPNGHGKTTLLRHIA-------------SRDL-KVPP----NIDILYCEQE-VVADD 216
L+G NG GKTTLL+ I RD+ +PP I Y + + +
Sbjct: 30 ALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPE 89
Query: 217 LTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRIL 276
LT VE L LL A+ A + +L+ +YE PR +
Sbjct: 90 LT-VEENL--------LLGAYARRRAKR-----KARLERVYELF---------PRLKE-- 124
Query: 277 AGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPT 320
+ + SGG + +++ARAL P LLLLDEP+
Sbjct: 125 --------RRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPS 160
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 51.9 bits (125), Expect = 2e-07
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 287 DRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL----NAVIWLDNYLQGWKKTL 342
+R SGG + RV++ARAL EP +LLLDEP LDL + + L + T
Sbjct: 125 NRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITF 184
Query: 343 LIVSHDQS 350
+ V+HDQ
Sbjct: 185 VFVTHDQE 192
Score = 34.9 bits (81), Expect = 0.077
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIA 193
+L I G + L+GP+G GKTTLLR IA
Sbjct: 18 GVSLDIKEGEFFTLLGPSGCGKTTLLRLIA 47
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 51.0 bits (123), Expect = 2e-07
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 291 KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD----LNAVIWLDNYLQGWKKTLLIVS 346
+ SGG R RVS+A L P+LL LDEPT+ LD L + L +T++
Sbjct: 110 RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADT-GRTIICSI 168
Query: 347 HD-QSFLDNVCNEIIHLDQQKLYYY 370
H S + + ++++ L Q ++ Y+
Sbjct: 169 HQPSSEIFELFDKLLLLSQGRVIYF 193
Score = 29.8 bits (68), Expect = 2.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 176 GLVGPNGHGKTTLLRHIASR 195
++GP+G GK+TLL +A R
Sbjct: 39 AIMGPSGAGKSTLLNALAGR 58
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 51.7 bits (124), Expect = 2e-07
Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 18/179 (10%)
Query: 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDI 205
+I+ + S S+ G ++ + ++ G Y +VGP+G GK+TL++ I L P I
Sbjct: 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLI--NRLIDPTEGSI 60
Query: 206 LYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA 265
L ++ D+ + + ++ L + + + + + + K +
Sbjct: 61 LIDGVDIKTIDVIDLRRKIGMVFQQPHLF---------EGTVKDNIEYGPMLKGEKNVDV 111
Query: 266 DSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
+ L+ +G ++ R KN SGG RVS+AR L P +LLLDEPT+ LD
Sbjct: 112 EY-------YLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALD 163
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 51.5 bits (124), Expect = 2e-07
Identities = 56/204 (27%), Positives = 81/204 (39%), Gaps = 63/204 (30%)
Query: 147 IKVENFSISAKGNDLFV-NANLLIANGRRYGLVGPNGHGKTTLLRHI------------- 192
I+ EN + G V N NL IA G L+GP+G GKTT ++ I
Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60
Query: 193 ASRDLKVPPNID----ILYCEQEV-------VADDLTAVESVLKADVKRTELLAECAKLE 241
D++ ++ I Y Q++ V +++ V +LK
Sbjct: 61 DGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLK---------------- 104
Query: 242 AADFSSEQQEQLKE-IYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300
+E+++E E L +G D AE DR SGG + R
Sbjct: 105 ------WPKEKIRERADELLALVGLDPAEFA---------------DRYPHELSGGQQQR 143
Query: 301 VSLARALYIEPTLLLLDEPTNHLD 324
V +ARAL +P LLL+DEP LD
Sbjct: 144 VGVARALAADPPLLLMDEPFGALD 167
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 51.7 bits (124), Expect = 2e-07
Identities = 66/241 (27%), Positives = 105/241 (43%), Gaps = 59/241 (24%)
Query: 152 FSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL----- 206
F G + N +L I G G+VG +G GK+TL + I + VP N +L
Sbjct: 8 FRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLI--QRFYVPENGRVLVDGHD 65
Query: 207 --------------YCEQEVVADDLTAVESVLKADVKRT-ELLAECAKLEAA-DFSSEQQ 250
QE V + + +++ AD + E + E AKL A DF SE
Sbjct: 66 LALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISE-- 123
Query: 251 EQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIE 310
L E Y+ + +G A GL SGG R R+++ARAL
Sbjct: 124 --LPEGYDTI--VGEQGA---------GL--------------SGGQRQRIAIARALIHN 156
Query: 311 PTLLLLDEPTNHLDLNA--VIW--LDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQK 366
P +L+ DE T+ LD + I + + G +T++I++H S + N + II +++ +
Sbjct: 157 PRILIFDEATSALDYESEHAIMRNMHDICAG--RTVIIIAHRLSTVKNA-DRIIVMEKGR 213
Query: 367 L 367
+
Sbjct: 214 I 214
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 51.5 bits (123), Expect = 3e-07
Identities = 54/213 (25%), Positives = 90/213 (42%), Gaps = 23/213 (10%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPP---NI 203
I++ENFS N + I + ++GP+G GKTTLLR I + +P
Sbjct: 4 IEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEG 63
Query: 204 DILYCEQEVVADDLTAVE------SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIY 257
I + Q++ L E V + + + + + +L I
Sbjct: 64 KIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIV 123
Query: 258 EELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLD 317
EE A E ++ ++ SGG + R+ +ARAL +EP ++LLD
Sbjct: 124 EESLKKAALWDEVKSE------------LNKPGTRLSGGQQQRLCIARALAVEPEVILLD 171
Query: 318 EPTNHLDLNAVIWLDNYLQ--GWKKTLLIVSHD 348
EPT+ LD A ++ L+ T++IV+H+
Sbjct: 172 EPTSALDPIATQRIEKLLEELSENYTIVIVTHN 204
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 52.5 bits (126), Expect = 3e-07
Identities = 63/230 (27%), Positives = 98/230 (42%), Gaps = 66/230 (28%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIAS------------ 194
+++ N + S G + +L I G + L+G +G GK+TLLR +A
Sbjct: 20 LEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLD 79
Query: 195 -RDLK-VPP---NIDILYCEQEVVADDLTAVESV---LKADVKRTELLAECAKLEAADFS 246
DL VPP I++++ + + +T +++ LK D KL A+ +
Sbjct: 80 GVDLSHVPPYQRPINMMF-QSYALFPHMTVEQNIAFGLKQD-----------KLPKAEIA 127
Query: 247 SEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQD---RATKNFSGGWRMRVSL 303
S E L ++ MQ+ R SGG R RV+L
Sbjct: 128 SRVNEMLGLVH---------------------------MQEFAKRKPHQLSGGQRQRVAL 160
Query: 304 ARALYIEPTLLLLDEPTNHLD--LNAVIWLD--NYLQGWKKTLLIVSHDQ 349
AR+L P LLLLDEP LD L + L+ + L+ T ++V+HDQ
Sbjct: 161 ARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQ 210
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 52.9 bits (128), Expect = 3e-07
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 16/121 (13%)
Query: 279 LGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL---NAVIW-LDNY 334
G + D+A S G R++LARAL LLLLDEPT LD V+ L+
Sbjct: 473 QGLDTPIGDQAAG-LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAA 531
Query: 335 LQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS-------MFKKMYAQKSKE 387
+ +T L+V+H L ++I + ++ +G+Y+ +F + A + +E
Sbjct: 532 SRR--QTTLMVTHQLEDLAQ-WDQIWVMQDGQI-VQQGDYAELSQAGGLFATLLAHRQEE 587
Query: 388 R 388
Sbjct: 588 I 588
Score = 39.1 bits (92), Expect = 0.006
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 133 KTGGQLAALENAVDIKVENFSI-SAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLL 189
+ G + A + V I+ E+ I S G L N + G+R LVGP+G GKT+LL
Sbjct: 336 QQGEKELASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLL 393
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 51.2 bits (123), Expect = 4e-07
Identities = 60/232 (25%), Positives = 93/232 (40%), Gaps = 40/232 (17%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
I +EN S S + + +L I G ++GPNG GK+TLL + SR LK + +I
Sbjct: 2 ITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLS-MMSRLLK-KDSGEIT 59
Query: 207 YCEQEVVA---DDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI 263
E+ + +L S+LK E + +L
Sbjct: 60 IDGLELTSTPSKELAKKLSILK---------------------QENHINSRLTVRDLVGF 98
Query: 264 G-------ADSAEPRARRILAGLGFSRAM--QDRATKNFSGGWRMRVSLARALYIEPTLL 314
G + E R R I + + DR SGG R R +A L + +
Sbjct: 99 GRFPYSQGRLTKEDR-RIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYV 157
Query: 315 LLDEPTNHLDLNAVIWLDNYLQG----WKKTLLIVSHDQSFLDNVCNEIIHL 362
LLDEP N+LD+ + + L+ KT+++V HD +F + I+ L
Sbjct: 158 LLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVAL 209
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 51.2 bits (122), Expect = 5e-07
Identities = 56/214 (26%), Positives = 92/214 (42%), Gaps = 27/214 (12%)
Query: 149 VENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYC 208
V + G N N+++ + L+GP+G GK+T LR P N +
Sbjct: 19 VNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGN----HY 74
Query: 209 EQEVV--ADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEE----LKA 262
E E++ D+ ++L +V E+ ++ + + K I+E L+
Sbjct: 75 EGEIILHPDN----VNILSPEVDPIEV-----RMRISMVFQKPNPFPKSIFENVAYGLRI 125
Query: 263 IGADSA---EPRARRILAGLGFSRAMQDRATK---NFSGGWRMRVSLARALYIEPTLLLL 316
G E R L ++DR N SGG + R+ +ARAL +P +LL
Sbjct: 126 RGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLF 185
Query: 317 DEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHD 348
DEPT+ LD A ++ + K T+LIV+H+
Sbjct: 186 DEPTSALDPIATASIEELISDLKNKVTILIVTHN 219
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 51.6 bits (124), Expect = 5e-07
Identities = 53/215 (24%), Positives = 90/215 (41%), Gaps = 28/215 (13%)
Query: 160 DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTA 219
+ ++AN + L GP+G GKT+L+ IA L P E + +
Sbjct: 12 NFALDANFTLPARGITALFGPSGSGKTSLINMIAG--LTRPD-------EGRIELNGRVL 62
Query: 220 VES----VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRI 275
V++ L + +R + + A+L F + L+ S + ++
Sbjct: 63 VDAEKGIFLPPEKRRIGYVFQDARL----FPH------YTVRGNLRYGMWKSMRAQFDQL 112
Query: 276 LAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL----NAVIWL 331
+A LG + DR SGG + RV++ RAL P LLL+DEP LDL + +L
Sbjct: 113 VALLGIEHLL-DRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYL 171
Query: 332 DNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQK 366
+ +L VSH + + + ++ L+ K
Sbjct: 172 ERLRDEINIPILYVSHSLDEVLRLADRVVVLENGK 206
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 50.2 bits (120), Expect = 6e-07
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 9/101 (8%)
Query: 256 IYEELKAIGADSAEPRARRI----LAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEP 311
I + + D ++ R I +A +G + A D+ SGG + RV++ARAL I P
Sbjct: 75 IALAVDRVLPDLSKSERRAIVEEHIALVGLTEA-ADKRPGQLSGGMKQRVAIARALSIRP 133
Query: 312 TLLLLDEPTNHLD-LNAVIWLDNYLQGWKK---TLLIVSHD 348
+LLLDEP LD L + +Q W++ T+L+V+HD
Sbjct: 134 KVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHD 174
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 51.0 bits (122), Expect = 6e-07
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 10/110 (9%)
Query: 287 DRATKN---FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--T 341
DR KN SGG + R+ +AR L +EP +LLLDEPT+ LD A +++ +Q + T
Sbjct: 174 DRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYT 233
Query: 342 LLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKE 391
++IV+H+ V + + + L + +F K+RM E
Sbjct: 234 IMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLF-----TNPKDRMTE 278
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 51.9 bits (124), Expect = 7e-07
Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 27/176 (15%)
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD-------LNAVIWLDNYLQGWKKTLLI 344
N SGG + RVSLARA+Y + L D+P + +D VI + L+ KT ++
Sbjct: 760 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKN--KTRIL 817
Query: 345 VSHDQSFLDNVCNEIIHLD--------QQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQE 396
V+H S+L V I+ Q+L G ++ F + YA ++ E +
Sbjct: 818 VTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLE----D 873
Query: 397 KRIKELKAHGQSKKQAEKK--TKEVLTRKQEKNKSKLQKADEDQG----PTELIQK 446
+ G+ K E +V+ ++ ++ S DQ + +QK
Sbjct: 874 SWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQK 929
Score = 35.3 bits (81), Expect = 0.100
Identities = 50/184 (27%), Positives = 74/184 (40%), Gaps = 31/184 (16%)
Query: 166 NLLIANGRRYGLVGPNGHGKTT----LLRHIASRDLKVPPNIDILYCEQEVVAD----DL 217
N+ I G + G+VG G GK++ L R S + ++ ID L +A DL
Sbjct: 1306 NVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEI--IIDGLN-----IAKIGLHDL 1358
Query: 218 TAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILA 277
+++ D L + ++ FS E++ E SA P
Sbjct: 1359 RFKITIIPQD---PVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALP------D 1409
Query: 278 GLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG 337
L A +N S G R V LARAL + +L+LDE T +DL DN +Q
Sbjct: 1410 KLDHECA---EGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLET----DNLIQS 1462
Query: 338 WKKT 341
+T
Sbjct: 1463 TIRT 1466
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 50.7 bits (122), Expect = 8e-07
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 256 IYEELKAIGAD-SAEPRARRILAGL---GFSRAMQDRATKNFSGGWRMRVSLARALYIEP 311
I EE I SA R + LA + G DR FSGG R R+++ARAL ++P
Sbjct: 114 ILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDP 173
Query: 312 TLLLLDEPTNHLDL 325
+++ DEP + LD+
Sbjct: 174 DVVVADEPVSALDV 187
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 50.2 bits (120), Expect = 8e-07
Identities = 54/192 (28%), Positives = 85/192 (44%), Gaps = 19/192 (9%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDL--KVPPNID 204
+ ++ ++ + + + +L I GR L+G NG GK+TLL+ +A DL P
Sbjct: 2 LTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAG-DLTGGGAPRGA 60
Query: 205 ILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG 264
+ + + + L A+++ A + +L + A+ A FS+ + L Y + G
Sbjct: 61 RVTGDVTLNGEPLAAIDAPRLA--RLRAVLPQAAQ-PAFAFSAREIVLLGR-YPHARRAG 116
Query: 265 ADSAEPR--ARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARAL---------YIEPTL 313
A + A + LA G + A+ R SGG RV AR L P
Sbjct: 117 ALTHRDGEIAWQALALAG-ATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRY 175
Query: 314 LLLDEPTNHLDL 325
LLLDEPT LDL
Sbjct: 176 LLLDEPTAALDL 187
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 50.4 bits (120), Expect = 9e-07
Identities = 68/232 (29%), Positives = 104/232 (44%), Gaps = 31/232 (13%)
Query: 147 IKVENFSIS-AKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDI 205
I++EN S S G N NL+I G G++G NG GK+TL H+ L P +
Sbjct: 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNG--LLRPQKGKV 59
Query: 206 LYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA 265
L V + D + L KL F + + + + EE A G
Sbjct: 60 L-------------VSGIDTGDFSK---LQGIRKLVGIVFQNPETQFVGRTVEEDLAFGP 103
Query: 266 DS-----AEPRAR--RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDE 318
++ E R R R LA +G + + R+ K SGG V+LA L +EP L+ DE
Sbjct: 104 ENLCLPPIEIRKRVDRALAEIGLEK-YRHRSPKTLSGGQGQCVALAGILTMEPECLIFDE 162
Query: 319 PTNHLDLN---AVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
T+ LD + AV+ L KT++ ++H+ L + + II +D+ K+
Sbjct: 163 VTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEEL-HDADRIIVMDRGKI 213
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 49.7 bits (119), Expect = 9e-07
Identities = 59/228 (25%), Positives = 96/228 (42%), Gaps = 60/228 (26%)
Query: 166 NLLIANGRRYGLVGPNGHGKTTLLRHIA------SRDLKV--------PPN---IDILYC 208
+L + G ++GP+G GK+TLL IA S ++ + PP + +L+
Sbjct: 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQ 78
Query: 209 EQEVVADDLTAVESV---LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA 265
E + A LT +++ L +K EQ+E+++ +G
Sbjct: 79 ENNLFAH-LTVAQNIGLGLSPGLKLNA---------------EQREKVEAA---AAQVG- 118
Query: 266 DSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD- 324
LAG R SGG R RV+LAR L E +LLLDEP + LD
Sbjct: 119 ----------LAGFL------KRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDP 162
Query: 325 --LNAVIWLDNYLQGWKK-TLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369
++ L + L +K TLL+V+H + + ++ LD ++
Sbjct: 163 ALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAA 210
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 49.5 bits (119), Expect = 1e-06
Identities = 55/209 (26%), Positives = 93/209 (44%), Gaps = 34/209 (16%)
Query: 177 LVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAE 236
L GP+G GK+TLL+ I + + P IL ++ S LK + L
Sbjct: 33 LTGPSGAGKSTLLKLI-YGEER-PTRGKILVNGHDL---------SRLKG--REIPFLRR 79
Query: 237 CAKLEAADFSSEQQEQLKEIYEE----LKAIGADSAEPRARRILA-----GLGFSRAMQD 287
+ DF + +YE L+ IG E R RR+ GL +A
Sbjct: 80 QIGVVFQDFRLLPD---RTVYENVALPLRVIGKPPREIR-RRVSEVLDLVGLK-HKARAL 134
Query: 288 RATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIW-LDNYLQGWKK---TLL 343
+ SGG + RV++ARA+ +P +LL DEPT +LD + W + + + T+L
Sbjct: 135 PSQ--LSGGEQQRVAIARAIVNQPAVLLADEPTGNLD-PDLSWEIMRLFEEINRLGTTVL 191
Query: 344 IVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372
+ +HD ++ + + ++ L+ +L +
Sbjct: 192 MATHDLELVNRMRHRVLALEDGRLVRDES 220
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 49.0 bits (118), Expect = 1e-06
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 17/82 (20%)
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAV-------IWLDNYLQG-WK--KT 341
N SGG + R+SLARA+Y + + LLD+P L+AV I+ +N + G KT
Sbjct: 127 NLSGGQKQRISLARAVYSDADIYLLDDP-----LSAVDAHVGRHIF-ENCILGLLLNNKT 180
Query: 342 LLIVSHDQSFLDNVCNEIIHLD 363
++V+H L + ++I+ LD
Sbjct: 181 RILVTHQLQLLPH-ADQIVVLD 201
Score = 31.7 bits (73), Expect = 0.75
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 147 IKVENFSIS-----AKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA------SR 195
I VE+ S + + + + NL + G +VGP G GK++LL + S
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 196 DLKVPPNIDILYCEQE 211
+ VP + I Y QE
Sbjct: 61 SVSVPGS--IAYVSQE 74
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 50.4 bits (121), Expect = 1e-06
Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 22/132 (16%)
Query: 260 LKAIGADSAEPRAR-----RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLL 314
LK GA E R +L L + DR K SGG R RV++ R L EP++
Sbjct: 100 LKLAGAKKEEINQRVNQVAEVLQ-LA---HLLDRKPKALSGGQRQRVAIGRTLVAEPSVF 155
Query: 315 LLDEPTNHLD----LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQK---- 366
LLDEP ++LD + I + + +T++ V+HDQ + ++I+ LD +
Sbjct: 156 LLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQV 215
Query: 367 -----LYYYKGN 373
LY+Y N
Sbjct: 216 GKPLELYHYPAN 227
Score = 35.4 bits (82), Expect = 0.074
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIA 193
+ NL I G VGP+G GK+TLLR IA
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIA 50
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 49.8 bits (119), Expect = 1e-06
Identities = 56/223 (25%), Positives = 88/223 (39%), Gaps = 39/223 (17%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
+ V S + + + G G+VG +G GKTTLL+ I+ R + P+ +
Sbjct: 7 LSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGR---LTPDAGTV 63
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLK----------EI 256
D + ++ +R LL ++ Q I
Sbjct: 64 ----TYRMRDGQPRDLYTMSEAERRRLLR-------TEWGFVHQNPRDGLRMQVSAGGNI 112
Query: 257 YEELKAIGA-------DSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYI 309
E L AIGA A+ + L R D + FSGG + R+ +AR L
Sbjct: 113 GERLMAIGARHYGNIRAEAQDWLEEVEIDL--DRI--DDLPRTFSGGMQQRLQIARNLVT 168
Query: 310 EPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTL----LIVSHD 348
P L+ +DEPT LD++ L + L+G + L +IV+HD
Sbjct: 169 RPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHD 211
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 49.4 bits (118), Expect = 1e-06
Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 42/193 (21%)
Query: 142 ENAVDIKVENFSISAKGN-DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVP 200
N VD++ +F+ +GN +F N +L + G+ ++GP+G GKTTLLR I ++
Sbjct: 5 ANLVDMRGVSFT---RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGG---QIA 58
Query: 201 PNI-DILYCEQEVVADDLTAVESVLKADVKRTELLAECAKL-------EAADFSSEQQEQ 252
P+ +IL+ + + A S L KR +L + L + + + Q
Sbjct: 59 PDHGEILFDGENIPA----MSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQ 114
Query: 253 LKE------IYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306
L + +L+A+G R SGG R +LARA
Sbjct: 115 LPAPLLHSTVMMKLEAVGL-----------------RGAAKLMPSELSGGMARRAALARA 157
Query: 307 LYIEPTLLLLDEP 319
+ +EP L++ DEP
Sbjct: 158 IALEPDLIMFDEP 170
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 49.0 bits (117), Expect = 2e-06
Identities = 26/76 (34%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSF 351
SGG + RV++ARAL P +L+LDE T+ LD + + L W ++T+L+++H S
Sbjct: 152 SGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLST 211
Query: 352 LDNVCNEIIHLDQQKL 367
++ ++I+ LD ++
Sbjct: 212 VERA-DQILVLDGGRI 226
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 49.8 bits (119), Expect = 2e-06
Identities = 49/215 (22%), Positives = 90/215 (41%), Gaps = 17/215 (7%)
Query: 175 YGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELL 234
Y ++G +G GK+TL+ H + + + D E + K+ +
Sbjct: 55 YFIIGNSGSGKSTLVTHFNGL---IKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNF 111
Query: 235 AECAKLEAADFSSEQQEQLKEIYEELKAIG-------ADSAEPRARRILAGLGFSRAMQD 287
E + + F + + K+ E+ G A+ A+ L +G + +
Sbjct: 112 KELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLE 171
Query: 288 RATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAV-----IWLDNYLQGWKKTL 342
R+ SGG + RV++A L I+P +L+ DEPT LD + LD KT+
Sbjct: 172 RSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANN--KTV 229
Query: 343 LIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377
+++H + V +E+I +D+ K+ Y +F
Sbjct: 230 FVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIF 264
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 49.1 bits (117), Expect = 2e-06
Identities = 57/215 (26%), Positives = 92/215 (42%), Gaps = 27/215 (12%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
I+ N + N + +L I + L+GP+G GK+TLLR +R L++
Sbjct: 5 IETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTF-NRLLELNE----- 58
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA- 265
E V + ++ DV E+ E + F IY+ + AIG
Sbjct: 59 --EARVEGEVRLFGRNIYSPDVDPIEVRREVGMV----FQYPNPFPHLTIYDNV-AIGVK 111
Query: 266 --------DSAEPRARRILAGLGFSRAMQDRAT---KNFSGGWRMRVSLARALYIEPTLL 314
+ R L ++DR N SGG R R+ +ARAL ++P +L
Sbjct: 112 LNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKIL 171
Query: 315 LLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSH 347
L+DEPT ++D ++ L KK T+++V+H
Sbjct: 172 LMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTH 206
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 50.5 bits (121), Expect = 2e-06
Identities = 76/307 (24%), Positives = 129/307 (42%), Gaps = 41/307 (13%)
Query: 144 AVDIKVENFSISAKGND-LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN 202
A+ IK FS +K N NL + G +VG G GKT+L+ + ++PP
Sbjct: 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLG---ELPPR 670
Query: 203 IDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA 262
D + VA + V + A V+ L + F E+ YE +A
Sbjct: 671 SDASVVIRGTVAY-VPQVSWIFNATVRDNILFG-------SPFDPER-------YE--RA 713
Query: 263 IGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNH 322
I +A +L G G + +R N SGG + RVS+ARA+Y + + D+P +
Sbjct: 714 IDV-TALQHDLDLLPG-GDLTEIGERGV-NISGGQKQRVSMARAVYSNSDVYIFDDPLSA 770
Query: 323 LDLN-AVIWLDNYLQG--WKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS---- 375
LD + D ++ KT ++V++ FL V + II L + + +G Y
Sbjct: 771 LDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQV-DRII-LVHEGMIKEEGTYEELSN 828
Query: 376 ---MFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQ---AEKKTKEVLTRKQEKNKS 429
+F+K+ K M+E+ ++ ++ + + K +K ++ KS
Sbjct: 829 NGPLFQKLMENAGK--MEEYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKKSKEGKS 886
Query: 430 KLQKADE 436
L K +E
Sbjct: 887 VLIKQEE 893
Score = 37.8 bits (88), Expect = 0.015
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 30/111 (27%)
Query: 289 ATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL--NAVIWLDNYLQGWKK------ 340
A +NFS G R +SLARAL +L+LDE T +D+ +A+I +K
Sbjct: 1371 AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALI---------QKTIREEF 1421
Query: 341 ---TLLIVSHD-QSFLDNVCNEIIHLDQQKLYYY-------KGNYSMFKKM 380
T+LI++H + +D C+ I+ LD ++ + S F KM
Sbjct: 1422 KSCTMLIIAHRLNTIID--CDRILVLDAGRVVEFDTPENLLSNEGSAFSKM 1470
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 48.4 bits (116), Expect = 2e-06
Identities = 59/203 (29%), Positives = 89/203 (43%), Gaps = 54/203 (26%)
Query: 166 NLLIANGRRYGLVGPNGHGKTTLLRHIA------SRDL--------KVPPN---IDILYC 208
+L + G R ++GP+G GK+TLL IA S L PP+ + +L+
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78
Query: 209 EQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSA 268
E + + LT +++ L KL ++ Q+E+L I
Sbjct: 79 ENNLFSH-LTVAQNIGLG-------LNPGLKL-----NAAQREKLHAI------------ 113
Query: 269 EPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD--LN 326
AR++ G+ + R SGG R RV+LAR L E +LLLDEP + LD L
Sbjct: 114 ---ARQM--GIE---DLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALR 165
Query: 327 AVI--WLDNYLQGWKKTLLIVSH 347
+ + Q + TLL+VSH
Sbjct: 166 QEMLTLVSQVCQERQLTLLMVSH 188
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 48.4 bits (116), Expect = 2e-06
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 23/106 (21%)
Query: 287 DRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL-------NAVIWLDNYLQGWK 339
+R K SGG R R+++ARAL +P +L+LDE T+ LD A L+ ++
Sbjct: 134 ERGVK-LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAA---LERLMKN-- 187
Query: 340 KTLLIVSHDQSFLDNVCNEIIHLDQQK---------LYYYKGNYSM 376
+T +++H S ++N + I+ L+ K L G Y+
Sbjct: 188 RTTFVIAHRLSTIENA-DRIVVLEDGKIVERGTHEELLAQGGVYAK 232
Score = 33.7 bits (78), Expect = 0.15
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLL 189
V+ K F G + + +L I G LVGP+G GK+TL+
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLV 45
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 48.3 bits (116), Expect = 3e-06
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 283 RAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPT 320
+ M R + SGG + ++++ARAL P LLLLDEPT
Sbjct: 122 KEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 48.5 bits (116), Expect = 3e-06
Identities = 28/69 (40%), Positives = 47/69 (68%), Gaps = 5/69 (7%)
Query: 285 MQDRATKN---FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK- 340
++DR K+ SGG + R+ +ARAL +EP +LL+DEPT+ LD + + ++ +Q KK
Sbjct: 136 VKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKD 195
Query: 341 -TLLIVSHD 348
T++IV+H+
Sbjct: 196 YTIVIVTHN 204
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 49.7 bits (119), Expect = 3e-06
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 9/78 (11%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK----TLLIVSHDQ 349
SGG + R+++ARAL +P +L+LDE T+ LD + LQ + T+L+++H
Sbjct: 619 SGGQKQRIAIARALVRKPRVLILDEATSALDAEC----EQLLQESRSRASRTVLLIAHRL 674
Query: 350 SFLDNVCNEIIHLDQQKL 367
S ++ ++I+ L + +
Sbjct: 675 STVER-ADQILVLKKGSV 691
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 49.3 bits (118), Expect = 3e-06
Identities = 52/211 (24%), Positives = 93/211 (44%), Gaps = 51/211 (24%)
Query: 157 KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYC-------E 209
KG L + A ++A +VG +G GK+TL+ +IL C
Sbjct: 25 KGISLDIYAGEMVA------IVGASGSGKSTLM--------------NILGCLDKPTSGT 64
Query: 210 QEVVADDLTAVESVLKADVKRT---------ELLAECAKLEAADFSSEQQEQLKEIYEEL 260
V D+ +++ A ++R LL+ ++ Q ++ +Y
Sbjct: 65 YRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSH--------LTAAQNVEVPAVY--- 113
Query: 261 KAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPT 320
+ RA+ +L LG ++ + ++ SGG + RVS+ARAL ++L DEPT
Sbjct: 114 AGLERKQRLLRAQELLQRLGLEDRVEYQPSQ-LSGGQQQRVSIARALMNGGQVILADEPT 172
Query: 321 NHLDLNA---VIWLDNYLQGWKKTLLIVSHD 348
LD ++ V+ + + L+ T++IV+HD
Sbjct: 173 GALDSHSGEEVMAILHQLRDRGHTVIIVTHD 203
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 47.3 bits (113), Expect = 3e-06
Identities = 52/230 (22%), Positives = 93/230 (40%), Gaps = 65/230 (28%)
Query: 147 IKVENFSISAKGNDLFV--NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNID 204
+ + N S S + V N +L + G + L+G +G GK+TLL+ + DL P +
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLT-GDL-KPQQGE 58
Query: 205 ILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG 264
I V S+ ++ L I
Sbjct: 59 ITLDGVPV----------------------------------SDLEKALS------SLIS 78
Query: 265 ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
+ P F +++ + FSGG R R++LAR L + ++LLDEPT LD
Sbjct: 79 VLNQRPYL--------FDTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLD 130
Query: 325 -------LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
L+ + L+ KTL+ ++H + ++++ ++I+ L+ K+
Sbjct: 131 PITERQLLSLIF---EVLKD--KTLIWITHHLTGIEHM-DKILFLENGKI 174
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 48.6 bits (116), Expect = 4e-06
Identities = 56/214 (26%), Positives = 101/214 (47%), Gaps = 24/214 (11%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAV--- 220
+ N G+ Y +VG G GK+TL+++I + L P V DD+T
Sbjct: 25 DVNTEFEQGKYYAIVGQTGSGKSTLIQNINA--LLKPTT-------GTVTVDDITITHKT 75
Query: 221 -ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA--DSAEPRARRILA 277
+ ++ KR ++ + + + + + E +EI K D + A R+L
Sbjct: 76 KDKYIRPVRKRIGMVFQFPESQLFEDTVE-----REIIFGPKNFKMNLDEVKNYAHRLLM 130
Query: 278 GLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA---VIWLDNY 334
LGFSR + ++ SGG ++++ L + P +++LDEPT LD + V+ L
Sbjct: 131 DLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKS 190
Query: 335 LQ-GWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
LQ KT+++VSHD + + +E+I + + +
Sbjct: 191 LQTDENKTIILVSHDMNEVARYADEVIVMKEGSI 224
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 49.6 bits (119), Expect = 4e-06
Identities = 59/199 (29%), Positives = 83/199 (41%), Gaps = 49/199 (24%)
Query: 146 DIKVEN--FSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI 203
I+V+ F G + + +L I G +VGP+G GK+TLLR + + P +
Sbjct: 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE--TPESG 508
Query: 204 DILYCEQEVVADDLTAVES----VLKADVKRTELLAECAKLEAADFSSEQQEQLK--EIY 257
+ Y Q++ D+ AV VL Q +L I+
Sbjct: 509 SVFYDGQDLAGLDVQAVRRQLGVVL------------------------QNGRLMSGSIF 544
Query: 258 EELKAIGA----DSAEPRARRILAGLGFS-RAMQ-------DRATKNFSGGWRMRVSLAR 305
E + A GA D A AR +AGL RAM SGG R R+ +AR
Sbjct: 545 ENI-AGGAPLTLDEAWEAAR--MAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIAR 601
Query: 306 ALYIEPTLLLLDEPTNHLD 324
AL +P +LL DE T+ LD
Sbjct: 602 ALVRKPRILLFDEATSALD 620
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 47.9 bits (115), Expect = 4e-06
Identities = 56/211 (26%), Positives = 86/211 (40%), Gaps = 62/211 (29%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTT----------------LLRHIASRDLKVPPNID--- 204
+L I G+ LVG +G GK+T LL + RDL N+
Sbjct: 21 GLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDL----NLRWLR 76
Query: 205 --ILYCEQEVVADDLTAVESVL--KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEEL 260
I QE V D T E++ K D E+ K DF L + Y+ L
Sbjct: 77 SQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMS----LPDGYDTL 132
Query: 261 KAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPT 320
+G +R ++ SGG + R+++ARAL P +LLLDE T
Sbjct: 133 --VG----------------------ERGSQ-LSGGQKQRIAIARALLRNPKILLLDEAT 167
Query: 321 NHLDLN--AVIW--LDNYLQGWKKTLLIVSH 347
+ LD ++ LD ++G +T ++++H
Sbjct: 168 SALDAESEKLVQEALDRAMKG--RTTIVIAH 196
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 49.1 bits (117), Expect = 4e-06
Identities = 60/244 (24%), Positives = 113/244 (46%), Gaps = 34/244 (13%)
Query: 136 GQLAALENAVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR 195
+L ++ AV+ + F + +F + + G+ +VGP G GKTTL+ + +
Sbjct: 326 PELPNVKGAVEFRHITFEFANSSQGVF-DVSFEAKAGQTVAIVGPTGAGKTTLINLL--Q 382
Query: 196 DLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLK- 254
+ P IL D + +V + ++++ +A + +A F+ +E ++
Sbjct: 383 RVYDPTVGQILI--------DGIDINTVTRESLRKS--IATVFQ-DAGLFNRSIRENIRL 431
Query: 255 --------EIYEELKAIGA-DSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305
E+YE KA A D R+ G+ + +R + SGG R R+++AR
Sbjct: 432 GREGATDEEVYEAAKAAAAHDFILKRSN------GYDTLVGERGNR-LSGGERQRLAIAR 484
Query: 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHDQSFLDNVCNEIIHLD 363
A+ +L+LDE T+ LD+ + N + +K T I++H S + N + ++ LD
Sbjct: 485 AILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNA-DLVLFLD 543
Query: 364 QQKL 367
Q +L
Sbjct: 544 QGRL 547
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 48.3 bits (115), Expect = 4e-06
Identities = 26/69 (37%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
Query: 285 MQDRATKN---FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK- 340
++DR N SGG + R+ +AR L IEP ++L+DEPT+ LD + + ++ +Q KK
Sbjct: 157 LKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKD 216
Query: 341 -TLLIVSHD 348
+++IV+H+
Sbjct: 217 YSIIIVTHN 225
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 48.1 bits (115), Expect = 5e-06
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 283 RAMQ--------DRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNY 334
+AM+ DR + SGG R R LA L + ++LLDEPT +LD+N + L
Sbjct: 121 QAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRL 180
Query: 335 LQGWK---KTLLIVSHD 348
++ KT++ V HD
Sbjct: 181 MRELNTQGKTVVTVLHD 197
Score = 35.0 bits (81), Expect = 0.076
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 146 DIKVENFSISAKGNDLFVNA-NLLIANGRRYGLVGPNGHGKTTLLRHIA 193
++ EN ++ G +N +L + G+ L+GPNG GK+TLL+ A
Sbjct: 2 TLRTENLTV-GYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA 49
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 47.7 bits (113), Expect = 5e-06
Identities = 50/188 (26%), Positives = 78/188 (41%), Gaps = 28/188 (14%)
Query: 148 KVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILY 207
K N ++ + N+ I + L+G +G GK+T LR + K+
Sbjct: 4 KTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAK------ 57
Query: 208 CEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI---- 263
D L +E DVK +++A + + +K IYE +
Sbjct: 58 ------IDGLVEIEG---KDVKNQDVVA--LRKNVGMVFQQPNVFVKSIYENISYAPKLH 106
Query: 264 ----GADSAEPRARRILAGLGFSRAMQDRATKN---FSGGWRMRVSLARALYIEPTLLLL 316
D E L +G ++D+ +N SGG + R+ +ARAL I+P LLLL
Sbjct: 107 GMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLL 166
Query: 317 DEPTNHLD 324
DEPT+ LD
Sbjct: 167 DEPTSALD 174
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 46.8 bits (112), Expect = 5e-06
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 291 KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQS 350
SGG + R++ AR L +P + LDE T+ LD + L L+ T++ V H S
Sbjct: 90 DVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPS 149
Query: 351 FLDNVCNEIIHLD 363
L + ++ LD
Sbjct: 150 -LWKFHDRVLDLD 161
Score = 39.4 bits (93), Expect = 0.001
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 147 IKVENFSISAKGNDLFV-NANLLIANGRRYGLVGPNGHGKTTLLRHIA------SRDLKV 199
I++EN S++ + + + + I G R + GP+G GK++L R +A S + +
Sbjct: 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60
Query: 200 PPNIDILY 207
P D+L+
Sbjct: 61 PEGEDLLF 68
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 47.7 bits (113), Expect = 5e-06
Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 12/105 (11%)
Query: 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHDQS 350
SGG + R+ +ARA+ + P++LL+DEP + LD + ++ + KK T++IV+H+
Sbjct: 147 LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNM- 205
Query: 351 FLDNVCNEIIHLDQQKLYYYKGN---YSMFKKMYAQKSKERMKEF 392
+ + + ++Y G Y KK++ KE + +
Sbjct: 206 ------QQAARVSDKTAFFYMGEMVEYDDTKKIFTNPEKEATQNY 244
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 47.1 bits (113), Expect = 5e-06
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 9/77 (11%)
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA------VIWLDNYLQGWKKTLLIV 345
FSGG + R + + L +EP L +LDEP + LD++A VI N L+ K++LI+
Sbjct: 104 GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVI---NKLREEGKSVLII 160
Query: 346 SHDQSFLDNVCNEIIHL 362
+H Q LD + + +H+
Sbjct: 161 THYQRLLDYIKPDRVHV 177
Score = 40.6 bits (96), Expect = 8e-04
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA 193
+++++ +S G ++ NL I G + L+GPNG GK+TL + I
Sbjct: 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIM 47
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 47.3 bits (113), Expect = 5e-06
Identities = 51/213 (23%), Positives = 74/213 (34%), Gaps = 43/213 (20%)
Query: 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDI 205
++ EN S LF + + + G + GPNG GKTTLLR +A L P ++
Sbjct: 2 MLEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAG--LLRPDAGEV 59
Query: 206 LY------CEQEVVADDLTAV--ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIY 257
+ +E L + + +K TEL A E L
Sbjct: 60 YWQGEPIQNVRESYHQALLYLGHQPGIK-----TELTAL--------------ENLH--- 97
Query: 258 EELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLD 317
+ LA +G ++D S G + RV+LAR L +LD
Sbjct: 98 -FWQRFHGSGNAATIWEALAQVGL-AGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILD 155
Query: 318 EPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQS 350
EP LD V L L+ +H
Sbjct: 156 EPFTALDKEGVALLTA---------LMAAHAAQ 179
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 48.2 bits (115), Expect = 6e-06
Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 259 ELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDE 318
E++ + R L +G + DR SGG + RV LARA E +LL+DE
Sbjct: 132 EMQGMPKAERRKRVDEQLELVGLA-QWADRKPGELSGGMQQRVGLARAFATEAPILLMDE 190
Query: 319 PTNHLD-LNAVIWLDNYLQ---GWKKTLLIVSHD 348
P + LD L D L+ KKT++ VSHD
Sbjct: 191 PFSALDPLIRTQLQDELLELQSKLKKTIVFVSHD 224
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 47.6 bits (113), Expect = 6e-06
Identities = 56/218 (25%), Positives = 95/218 (43%), Gaps = 35/218 (16%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
I++ + +S ++ NL I + L+GP+G GK+TLLR + +R ++ L
Sbjct: 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLR-VFNRLIE-------L 55
Query: 207 YCEQEVVADDLTAVESVLKADV----KRTELLAECAKLEAADFSSEQQEQLKEIYE---- 258
Y E V + + + K DV +R +++ F I+E
Sbjct: 56 YPEARVSGEVYLDGQDIFKMDVIELRRRVQMV----------FQIPNPIPNLSIFENVAL 105
Query: 259 --ELKAIGADSAE--PRARRILAGLGFSRAMQDR---ATKNFSGGWRMRVSLARALYIEP 311
+L + E R R L ++DR SGG + R+ +ARAL +P
Sbjct: 106 GLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQP 165
Query: 312 TLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSH 347
+LL DEPT +LD +++ KK T+++V+H
Sbjct: 166 EVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTH 203
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 47.8 bits (114), Expect = 6e-06
Identities = 51/178 (28%), Positives = 81/178 (45%), Gaps = 31/178 (17%)
Query: 158 GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDL 217
G LF + NL I +G +G G GK+T+++ + L VP + V DD
Sbjct: 20 GRALF-DVNLTIEDGSYTAFIGHTGSGKSTIMQLL--NGLHVP-------TQGSVRVDD- 68
Query: 218 TAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEE--LK---------AIGAD 266
+++ + K ++ K+ E Q ++EE LK + +
Sbjct: 69 ----TLITSTSKNKDIKQIRKKVGLVFQFPESQ-----LFEETVLKDVAFGPQNFGVSQE 119
Query: 267 SAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
AE AR LA +G S ++ ++ SGG RV++A L +EP +L+LDEPT LD
Sbjct: 120 EAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 47.9 bits (115), Expect = 7e-06
Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 11/73 (15%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTL----LIVSHDQ 349
SGG + RV++ RAL P LLL+DEP LDL L YL+ + + L VSH
Sbjct: 130 SGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHS- 188
Query: 350 SFLDNVCNEIIHL 362
LD EI+ L
Sbjct: 189 --LD----EILRL 195
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 46.5 bits (111), Expect = 7e-06
Identities = 36/151 (23%), Positives = 55/151 (36%), Gaps = 41/151 (27%)
Query: 177 LVGPNGHGKTTLLRHIASR-DLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLA 235
++G G G +TLL+ +A+R + V DI Y + + E A
Sbjct: 38 VLGRPGSGCSTLLKALANRTEGNVSVEGDIHY-------NGIPYKE------------FA 78
Query: 236 ECAKLEAADFSSEQQEQLKEI-YEELKAIGADSAEPRARRILAGLGFSRAMQ-DRATKNF 293
E E + SE+ + E L F+ + + +
Sbjct: 79 EKYPGEII-YVSEEDVHFPTLTVRET------------------LDFALRCKGNEFVRGI 119
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
SGG R RVS+A AL ++L D T LD
Sbjct: 120 SGGERKRVSIAEALVSRASVLCWDNSTRGLD 150
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 47.3 bits (112), Expect = 8e-06
Identities = 51/216 (23%), Positives = 92/216 (42%), Gaps = 29/216 (13%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
I+VEN + + N NL I L+GP+G GK+T +R + + +P
Sbjct: 4 IEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIP----GF 59
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKL--EAADFSSEQQEQLKEIYEE----L 260
E + D + V EL + + + F K I++ L
Sbjct: 60 RHEGHIYLDG----VDIYDPAVDVVELRKKVGMVFQKPNPFP-------KSIFDNVAYGL 108
Query: 261 KAIG---ADSAEPRARRILAGLGFSRAMQDRATKN---FSGGWRMRVSLARALYIEPTLL 314
+ G D E R L ++D+ K+ SGG + R+ +AR + + P ++
Sbjct: 109 RIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVI 168
Query: 315 LLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHD 348
L+DEP + LD + +++ + K+ T++IV+H+
Sbjct: 169 LMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHN 204
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 46.8 bits (111), Expect = 9e-06
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Query: 263 IGADSAEPRARRILAGLGFSRAMQDRATKNF----SGGWRMRVSLARALYIEPTLLLLDE 318
I S + RR+ A L + D+A KNF SGG + RV +ARA+ +P +LL DE
Sbjct: 106 IAGASGDDIRRRVSAALD-KVGLLDKA-KNFPIQLSGGEQQRVGIARAVVNKPAVLLADE 163
Query: 319 PTNHLD---LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLY 368
PT +LD ++ L T+L+ +HD + ++ L L+
Sbjct: 164 PTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 46.9 bits (112), Expect = 9e-06
Identities = 56/228 (24%), Positives = 84/228 (36%), Gaps = 48/228 (21%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
+ ++ S+S G + + + G L+GPNG GKTTL+ I K P +
Sbjct: 6 LYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITG---KTRPQEGEV 62
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELK----- 261
+ + DLT K R K + ++E L
Sbjct: 63 LFDGDT---DLT------KLPEHRIARAGIGRKFQKP-----------TVFENLTVRENL 102
Query: 262 --AIGAD-----------SAEPRAR--RILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306
A+ D AE R R +LA +G +DR S G + + +
Sbjct: 103 ELALNRDKSVFASLFARLRAEERRRIDELLATIGLG-DERDRLAALLSHGQKQWLEIGML 161
Query: 307 LYIEPTLLLLDEPTNHL---DLNAVIWLDNYLQGWKKTLLIVSHDQSF 351
L +P LLLLDEP + + L L G K ++L+V HD F
Sbjct: 162 LAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMGF 208
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 46.8 bits (112), Expect = 9e-06
Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 61/233 (26%)
Query: 158 GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLR-------------HIASRDLKVPPNID 204
G + + + I G++ +VGP+G GK+T+LR I +D++ +
Sbjct: 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIR---EVT 69
Query: 205 ILYCEQE--VVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA 262
+ + VV D + +++ + +A D +E+ E KA
Sbjct: 70 LDSLRRAIGVVPQDTVLFNDTIGYNIRY-------GRPDATD---------EEVIEAAKA 113
Query: 263 IGADSAEPRARRILA-GLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTN 321
A + +I+ G+ + +R K SGG + RV++ARA+ P +LLLDE T+
Sbjct: 114 --AQIHD----KIMRFPDGYDTIVGERGLK-LSGGEKQRVAIARAILKNPPILLLDEATS 166
Query: 322 HLD----------LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQ 364
LD L V +G +T ++++H S + N ++II L
Sbjct: 167 ALDTHTEREIQAALRDV------SKG--RTTIVIAHRLSTIVN-ADKIIVLKD 210
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 46.6 bits (110), Expect = 1e-05
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDN-----YLQGWKKTLLIVS 346
N SGG R R+ +ARALY ++ LD+P + LD++ L +LQ K+TL++V+
Sbjct: 140 NLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVT 199
Query: 347 HDQSFL 352
H +L
Sbjct: 200 HKLQYL 205
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 46.7 bits (111), Expect = 1e-05
Identities = 28/94 (29%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLD---NYLQGWKKTLLIVSHDQ 349
FSGG + R + + +EP L +LDE + LD++A+ + N L+ K++ +IV+H Q
Sbjct: 146 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQ 205
Query: 350 SFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQ 383
LD + + +H+ Q G++++ K++ Q
Sbjct: 206 RILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQ 239
Score = 37.8 bits (88), Expect = 0.008
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRD 196
+ +++ +S + + NL + G + ++GPNG GK+TL +A R+
Sbjct: 2 LSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGRE 51
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 47.7 bits (114), Expect = 1e-05
Identities = 39/167 (23%), Positives = 67/167 (40%), Gaps = 43/167 (25%)
Query: 177 LVGPNGHGKTTLLRHIASR---DLKVPPNIDI------LYCEQEVVA----DD-----LT 218
++G +G GKTTL+ +A R +K ++ + + + A DD LT
Sbjct: 56 VMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115
Query: 219 AVESVL-KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILA 277
E ++ +A ++ + E++E++ E+ + L +
Sbjct: 116 VREHLMFQAHLR----------MPRRVTKKEKRERVDEVLQALGLR-------KCANTRI 158
Query: 278 GLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
G K SGG R R++ A L +P LL DEPT+ LD
Sbjct: 159 G-------VPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLD 198
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 46.6 bits (110), Expect = 1e-05
Identities = 59/236 (25%), Positives = 97/236 (41%), Gaps = 37/236 (15%)
Query: 132 EKTGGQLAALE---NAVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTL 188
E+ GGQ A + A + N ++ G + ++ L+GP G GKTT
Sbjct: 4 ERLGGQSGAADVDAAAPAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTF 63
Query: 189 LRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK-ADV----KRTELLAECAKLEAA 243
LR + + KV D L S+ DV +R +L
Sbjct: 64 LRTLNRMNDKVS--------GYRYSGDVLLGGRSIFNYRDVLEFRRRVGML--------- 106
Query: 244 DFSSEQQEQLKEIYEELKAIGADSAEPR------ARRILAGLGFSRAMQDRATKN---FS 294
F + + L + A PR A+ L +G A++DR + + S
Sbjct: 107 -FQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLS 165
Query: 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHD 348
GG + + LAR L + P +LLLDEPT+ LD ++ +++ + T++IV+H+
Sbjct: 166 GGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHN 221
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 47.5 bits (114), Expect = 1e-05
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 271 RARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
RAR +LA LG + S R V +ARAL + +L+LDEPT L
Sbjct: 125 RARELLARLGLDIDPDTLV-GDLSIAQRQMVEIARALSFDARVLILDEPTAALT 177
Score = 41.0 bits (97), Expect = 0.001
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 287 DRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA 327
++ SGG + +V LAR L +P +L+LDEPT +D+ A
Sbjct: 396 EQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGA 436
Score = 29.8 bits (68), Expect = 3.8
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIA 193
+L + G + L+G NG GK+TL++ ++
Sbjct: 26 GVSLTVRPGEVHALLGENGAGKSTLMKILS 55
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 47.4 bits (113), Expect = 2e-05
Identities = 62/237 (26%), Positives = 103/237 (43%), Gaps = 43/237 (18%)
Query: 144 AVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI 203
V+I+ F+ + N N + G+ G+ GP G GK+TLL I R V
Sbjct: 315 DVNIR--QFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLI-QRHFDVSEG- 370
Query: 204 DILYCEQEVVADDLTAVESVLKADVKRTELL-----AECAKLEAADFSSEQQEQ---LKE 255
DI + + + L + S L A V +T L A L D + ++ E L
Sbjct: 371 DIRFHDIPLTKLQLDSWRSRL-AVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLAS 429
Query: 256 IYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLL 315
+++++ + P+ G+ + +R SGG + R+S+ARAL + +L+
Sbjct: 430 VHDDILRL------PQ--------GYDTEVGERGVM-LSGGQKQRISIARALLLNAEILI 474
Query: 316 LDEPTNHLDLNAV-------IWLDNYLQ-GWKKTLLIVSHDQSFLDNVCNEIIHLDQ 364
LD+ L+AV I L N Q G +T++I +H S L +EI+ +
Sbjct: 475 LDDA-----LSAVDGRTEHQI-LHNLRQWGEGRTVIISAHRLSALTEA-SEILVMQH 524
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 46.6 bits (110), Expect = 2e-05
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 287 DRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLI 344
D+A SGG + R+ +ARA+ +EP +LL+DEPT+ LD A ++ + KK +++I
Sbjct: 220 DKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIII 279
Query: 345 VSHDQSFLDNVCNEIIHLDQ 364
V+H + + +E + Q
Sbjct: 280 VTHSMAQAQRISDETVFFYQ 299
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 46.7 bits (112), Expect = 2e-05
Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 25/98 (25%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLD-------LNAVIWLDNYLQGWKKTLLIVS 346
SGG + R+ +ARAL + LLLLDEPT LD L L + Q KT+L+++
Sbjct: 477 SGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILEL---LAEHAQN--KTVLMIT 531
Query: 347 HDQSFL---DNVC----NEII----H--LDQQKLYYYK 371
H + L D +C +II H L Q+ YY+
Sbjct: 532 HRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQGRYYQ 569
Score = 30.2 bits (69), Expect = 3.7
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 143 NAVDIKVENFSISAKGNDLFV--NANLLIANGRRYGLVGPNGHGKTTLL 189
+ V + + N S + V +L I G + L+G G GK+TLL
Sbjct: 335 DQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLL 383
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 46.9 bits (111), Expect = 3e-05
Identities = 71/305 (23%), Positives = 126/305 (41%), Gaps = 49/305 (16%)
Query: 144 AVDIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN 202
A+ IK FS +K + NL I G +VG G GKT+L I++ ++
Sbjct: 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSL---ISAMLGELSHA 670
Query: 203 IDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA 262
+ VA + V + A V+ L +DF SE+ +A
Sbjct: 671 ETSSVVIRGSVAY-VPQVSWIFNATVRENILFG-------SDFESERY---------WRA 713
Query: 263 IGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNH 322
I +A +L G + + +R N SGG + RVS+ARA+Y + + D+P +
Sbjct: 714 IDV-TALQHDLDLLPGRDLTE-IGERGV-NISGGQKQRVSMARAVYSNSDIYIFDDPLSA 770
Query: 323 LDLNAVIWLDNY-----LQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY--- 374
LD + + + L+G KT ++V++ FL + + I L + + +G +
Sbjct: 771 LDAHVAHQVFDSCMKDELKG--KTRVLVTNQLHFLPLM--DRIILVSEGMIKEEGTFAEL 826
Query: 375 ----SMFKKMY--AQKSKERMKEFEKQEKRIK-------ELKAHGQSKKQAEKKTKEVLT 421
S+FKK+ A K + E +K ++ + K+ + VL
Sbjct: 827 SKSGSLFKKLMENAGKMDATQEVNTNDENILKLGPTVTIDVSERNLGSTKQGKRGRSVLV 886
Query: 422 RKQEK 426
+++E+
Sbjct: 887 KQEER 891
Score = 37.3 bits (86), Expect = 0.027
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 13/87 (14%)
Query: 291 KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK------TLLI 344
+NFS G R +SLARAL +L+LDE T +D+ D+ +Q + T+L+
Sbjct: 1370 ENFSVGQRQLLSLARALLRRSKILVLDEATASVDVR----TDSLIQRTIREEFKSCTMLV 1425
Query: 345 VSHD-QSFLDNVCNEIIHLDQQKLYYY 370
++H + +D C++I+ L ++ Y
Sbjct: 1426 IAHRLNTIID--CDKILVLSSGQVLEY 1450
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 46.6 bits (111), Expect = 3e-05
Identities = 52/220 (23%), Positives = 86/220 (39%), Gaps = 49/220 (22%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLR-------------HIASRDLKVPPNIDILYCEQ 210
+ I G+ +VG +G GK+T+LR I +D++ L
Sbjct: 281 GISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDV-TQQSLRRAI 339
Query: 211 EVVADDLTAVESVLKADVKRT-ELLAECAKLEAADFSSEQQ--EQLKEIYEELKAIGADS 267
+V D + ++K AA+ + + L E Y+
Sbjct: 340 GIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYD--------- 390
Query: 268 AEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA 327
G+G +R K SGG + RV++AR + P +L+LDE T+ LD +
Sbjct: 391 ---------TGVG------ERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHT 434
Query: 328 --VIW--LDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLD 363
I L G +T L+++H S + + +EII LD
Sbjct: 435 EQAIQAALREVSAG--RTTLVIAHRLSTIIDA-DEIIVLD 471
Score = 34.6 bits (80), Expect = 0.12
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 469 LHNVTFAYEGMKPLLMSKADEDQGPTELIQKPREYVVKFSFPDPPPLQPPILG---LHNV 525
L+ + F+Y ++ L +L E V + PD PPL P LG NV
Sbjct: 216 LNFLGFSYREIRQALTDMEK----MFDL--LDVEAEVSDA-PDAPPLWPVRLGAVAFINV 268
Query: 526 TFAYEGMKPLLVDVRK 541
+FAY+ +P+L +
Sbjct: 269 SFAYDPRRPILNGISF 284
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 45.9 bits (108), Expect = 3e-05
Identities = 53/223 (23%), Positives = 92/223 (41%), Gaps = 27/223 (12%)
Query: 147 IKVENFSISAKGNDLFV-----NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPP 201
IK E + + + N F + +L + G L+G G GK+TLL+H+
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHL--------- 52
Query: 202 NIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELK 261
N + E +V D+ + + ++K K F + + +E +
Sbjct: 53 NGLLQPTEGKVTVGDIVVSSTSKQKEIKPVR------KKVGVVFQFPESQLFEETVLKDV 106
Query: 262 AIG-------ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLL 314
A G + AE A L +G + +++ SGG RV++A L +EP +L
Sbjct: 107 AFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVL 166
Query: 315 LLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCN 357
+LDEPT LD A I + + ++ V +D+V +
Sbjct: 167 VLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVAD 209
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 45.4 bits (107), Expect = 3e-05
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 287 DRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLI 344
DR + FSGG + R+ +ARAL + P ++LLDEPT+ LD + ++ L K T ++
Sbjct: 142 DRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIM 201
Query: 345 VSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377
V+H+ + ++ L L MF
Sbjct: 202 VTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 45.3 bits (108), Expect = 3e-05
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 287 DRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTL---- 342
D FSGG + R+ +AR L P L+ +DEPT LD++ L + L+G + L
Sbjct: 146 DDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAV 205
Query: 343 LIVSHD 348
+IV+HD
Sbjct: 206 VIVTHD 211
Score = 30.3 bits (69), Expect = 2.2
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 176 GLVGPNGHGKTTLLRHIASR 195
G+VG +G GKTTLL +++R
Sbjct: 36 GIVGESGSGKTTLLNALSAR 55
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 45.9 bits (109), Expect = 3e-05
Identities = 33/127 (25%), Positives = 63/127 (49%), Gaps = 14/127 (11%)
Query: 251 EQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIE 310
E L+ + +L + R + ++ +G + +R FSGG R+ +ARAL +E
Sbjct: 123 EPLRTYHPKLSR---QEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILE 179
Query: 311 PTLLLLDEPTNHLDLNAVIWLDNYLQGWKK----TLLIVSHDQSFLDNVCNEIIHLDQQK 366
P L++ DEP + LD++ + N LQ ++ +L+ ++HD + + H+ +
Sbjct: 180 PKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVK-------HISDRV 232
Query: 367 LYYYKGN 373
L Y G+
Sbjct: 233 LVMYLGH 239
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 45.2 bits (107), Expect = 3e-05
Identities = 50/192 (26%), Positives = 84/192 (43%), Gaps = 26/192 (13%)
Query: 167 LLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226
L++ G L+G +G GK+TLL +A D D E +V L ++
Sbjct: 31 LVVKRGETIALIGESGSGKSTLLAILAGLD-------DGSSGEVSLVGQPLHQMD----- 78
Query: 227 DVKRTELLAECAKLEAADF------SSEQQEQLKEIYEELKAIGADSAEPRARRILAGLG 280
+ R +L A+ F ++ + +L + L+ + + A+ +L LG
Sbjct: 79 EEARAKLRAKHVGFVFQSFMLIPTLNALENVELPAL---LRGESSRQSRNGAKALLEQLG 135
Query: 281 FSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYL----Q 336
+ + D SGG + RV+LARA P +L DEPT +LD + + L +
Sbjct: 136 LGKRL-DHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNR 194
Query: 337 GWKKTLLIVSHD 348
TL++V+HD
Sbjct: 195 EHGTTLILVTHD 206
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 45.2 bits (107), Expect = 3e-05
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHD 348
SGG + R+ +ARAL +EP +LL+DEP + LD A ++ + K T++IV+H+
Sbjct: 151 SGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHN 207
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 45.4 bits (108), Expect = 4e-05
Identities = 52/204 (25%), Positives = 69/204 (33%), Gaps = 48/204 (23%)
Query: 143 NAVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN 202
+ + F + +L IA G ++G NG GK+TLL IA
Sbjct: 3 SLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQ 62
Query: 203 IDILYCEQEVVADDLTAVESVLKADVKRTELLAE---------CAKLEAAD--------- 244
I I D+T K+ KR LLA +L +
Sbjct: 63 ILID-------GVDVTK-----KSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRG 110
Query: 245 ----FSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300
SS E+ + + E A GLG + DR SGG R
Sbjct: 111 KKRGLSSALNERRRSSFRERLAR-------------LGLGLENRLSDRIGL-LSGGQRQA 156
Query: 301 VSLARALYIEPTLLLLDEPTNHLD 324
+SL A P +LLLDE T LD
Sbjct: 157 LSLLMATLHPPKILLLDEHTAALD 180
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 45.0 bits (106), Expect = 4e-05
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHDQ 349
+ SGG + RV +AR L ++P ++LLDEPT+ LD + ++N L + T+++V+H
Sbjct: 148 SLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSM 207
Query: 350 SFLDNVCNEIIHLDQQKLYYYKGNYSMF 377
+ ++ L + MF
Sbjct: 208 HQASRISDKTAFFLTGNLIEFADTKQMF 235
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 45.7 bits (109), Expect = 4e-05
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 285 MQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLI 344
R SGG + RV++ARA+ +P +LLLDE + LD + N L+ ++ L I
Sbjct: 137 FAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGI 196
Query: 345 ----VSHDQ 349
V+HDQ
Sbjct: 197 TFVFVTHDQ 205
Score = 36.8 bits (86), Expect = 0.021
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA 193
+++ S S G ++ N +L I NG L+GP+G GKTT+LR IA
Sbjct: 15 VELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIA 61
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 44.8 bits (106), Expect = 5e-05
Identities = 51/181 (28%), Positives = 79/181 (43%), Gaps = 18/181 (9%)
Query: 149 VENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYC 208
+ N S G L +L G+ GL+G NG GK+TLL+ + PP+
Sbjct: 14 LRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ---PPS------ 64
Query: 209 EQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSA 268
E E++ D KA ++ L + +L AA+ + ++ Y A+G A
Sbjct: 65 EGEILLDAQPLESWSSKAFARKVAYLPQ--QLPAAEGMTVRELVAIGRYPWHGALGRFGA 122
Query: 269 EPRARR----ILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
R + L GL + + R + SGG R R +A + + LLLDEPT+ LD
Sbjct: 123 ADREKVEEAISLVGL---KPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179
Query: 325 L 325
+
Sbjct: 180 I 180
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 45.2 bits (107), Expect = 5e-05
Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 19/211 (9%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES- 222
N + + G LVG G GK+TL++H + I I +T
Sbjct: 25 NISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITI-------AGYHITPETGN 77
Query: 223 -VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA--DSAEPRARRILAGL 279
LK K+ L+ + EA F + LK++ K G D A+ +A + L +
Sbjct: 78 KNLKKLRKKVSLVFQFP--EAQLF---ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKV 132
Query: 280 GFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK 339
G S + ++ SGG RV++A + EP +L LDEP LD + + ++
Sbjct: 133 GLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQ 192
Query: 340 K---TLLIVSHDQSFLDNVCNEIIHLDQQKL 367
K T+++V+H+ + ++++ L+ KL
Sbjct: 193 KAGHTVILVTHNMDDVAEYADDVLVLEHGKL 223
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 45.0 bits (106), Expect = 5e-05
Identities = 57/248 (22%), Positives = 106/248 (42%), Gaps = 15/248 (6%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
++V++ SI + ++ I L+GP+G GK+T LR I + +P
Sbjct: 22 LEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPS----A 77
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFS--SEQQEQLKEIYEELKAIG 264
E E++ + L ++S + R E+ K S + LK E K++
Sbjct: 78 RSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVL 137
Query: 265 ADSAEPRARRILAGLGFSRAMQDR---ATKNFSGGWRMRVSLARALYIEPTLLLLDEPTN 321
+ E L ++DR + + SGG + R+ +AR L ++P +LLLDEP +
Sbjct: 138 DEIVEES----LTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPAS 193
Query: 322 HLDLNAVIWLDNYLQGWKK--TLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKK 379
LD + ++ + K+ +++IV+H+ V + L Y +F
Sbjct: 194 ALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTS 253
Query: 380 MYAQKSKE 387
QK+++
Sbjct: 254 PKQQKTED 261
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 44.8 bits (106), Expect = 5e-05
Identities = 52/198 (26%), Positives = 84/198 (42%), Gaps = 55/198 (27%)
Query: 177 LVGPNGHGKTTLLRHIASRDLKVPPNI----DILYCEQEVVADDLTAVESVLKADVK--- 229
L+GP+G GK+TLLR I +R + P + I+Y + + V+ L+ ++
Sbjct: 36 LIGPSGSGKSTLLRSI-NRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD--LRKEIGMVF 92
Query: 230 ------------------RTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPR 271
R + + + L+ A S + I++E+K DSA
Sbjct: 93 QQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKG---ASIWDEVKDRLHDSA--- 146
Query: 272 ARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWL 331
LG S GG + RV +AR L P ++LLDEPT+ LD + +
Sbjct: 147 -------LGLS------------GGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKI 187
Query: 332 DNYLQGWKK--TLLIVSH 347
+ L G K T+L+V+
Sbjct: 188 EETLLGLKDDYTMLLVTR 205
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 44.5 bits (106), Expect = 5e-05
Identities = 29/74 (39%), Positives = 36/74 (48%), Gaps = 16/74 (21%)
Query: 288 RATKNFSGG-WRMRVSLARA-LYIEPT------LLLLDEPTNHLDLNAVIWLDNYL---- 335
R+ SGG W+ RV LA L + P LLLLDEP N LD+ LD L
Sbjct: 122 RSVNQLSGGEWQ-RVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELC 180
Query: 336 -QGWKKTLLIVSHD 348
QG +++ SHD
Sbjct: 181 QQG--IAVVMSSHD 192
Score = 33.0 bits (76), Expect = 0.30
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 177 LVGPNGHGKTTLLRHIA 193
LVGPNG GK+TLL +A
Sbjct: 27 LVGPNGAGKSTLLARMA 43
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 43.6 bits (104), Expect = 5e-05
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYL-----QGWKKTLLIVSH 347
S G R V +ARAL LL+LDEPT L V L + QG ++ +SH
Sbjct: 84 SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQG--VAVIFISH 140
Score = 30.1 bits (69), Expect = 1.8
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIA 193
+L + G + L+G NG GK+TL++ ++
Sbjct: 18 GVSLSVRRGEVHALLGENGAGKSTLMKILS 47
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 43.7 bits (103), Expect = 6e-05
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD----LNAVIWLDNYLQGWKKTLLIVSH 347
+ SGG RV++A AL T L DEP+ +LD LNA + + KKT L+V H
Sbjct: 71 DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEH 130
Query: 348 DQSFLDNVCNEII 360
D + LD + + I
Sbjct: 131 DLAVLDYLSDRIH 143
Score = 30.2 bits (68), Expect = 1.6
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 160 DLFVNANL-LIANGRRYGLVGPNGHGKTTLLRHIA 193
F+ L ++ G G+VGPNG GKTT ++ +A
Sbjct: 12 VFFLLVELGVVKEGEVIGIVGPNGTGKTTAVKILA 46
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 44.1 bits (105), Expect = 6e-05
Identities = 41/192 (21%), Positives = 67/192 (34%), Gaps = 46/192 (23%)
Query: 177 LVGPNGHGKTTLLRHI-------ASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVK 229
+VG NG GKTT++ + + K + L E EV A V+ +
Sbjct: 27 IVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQ----VKLAFENANG 82
Query: 230 RT-ELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDR 288
+ + A LE F Q E + + ++LA L
Sbjct: 83 KKYTITRSLAILENVIFCH-QGESNWPLLDMRGRCSG------GEKVLASLII------- 128
Query: 289 ATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD-------LNAVIWLDNYLQGWKKT 341
R++LA +L LDEPT +LD L +I +
Sbjct: 129 -----------RLALAETFGSNCGILALDEPTTNLDEENIEESLAEII--EERKSQKNFQ 175
Query: 342 LLIVSHDQSFLD 353
L++++HD+ +D
Sbjct: 176 LIVITHDEELVD 187
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 44.7 bits (106), Expect = 6e-05
Identities = 64/241 (26%), Positives = 109/241 (45%), Gaps = 42/241 (17%)
Query: 147 IKVENFS-ISAKGNDL----FVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPP 201
IK+EN + I +G N N+ I +G GL+G G GK+TL++H+ L P
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNG--LLKPT 60
Query: 202 NIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELK 261
+ I+ + D+T + L K+ L+ F + + +E E+
Sbjct: 61 SGKII-----IDGVDITDKKVKLSDIRKKVGLV----------FQYPEYQLFEETIEKDI 105
Query: 262 AIGA-------DSAEPRARRILAGLGFSR-AMQDRATKNFSGGWRMRVSLARALYIEPTL 313
A G + E R +R + +G +D++ SGG + RV++A + +EP +
Sbjct: 106 AFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKI 165
Query: 314 LLLDEPTNHLD-------LNAVIWL-DNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQ 365
L+LDEPT LD LN + L Y T+++VSH + + + II +++
Sbjct: 166 LILDEPTAGLDPKGRDEILNKIKELHKEY----NMTIILVSHSMEDVAKLADRIIVMNKG 221
Query: 366 K 366
K
Sbjct: 222 K 222
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
Length = 1466
Score = 45.8 bits (108), Expect = 7e-05
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
Query: 291 KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK----KTLLIVS 346
K+ SGG + R+++ARAL EP +LLLDE T+ LD N+ ++ + K KT++ ++
Sbjct: 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIA 1416
Query: 347 H 347
H
Sbjct: 1417 H 1417
Score = 41.6 bits (97), Expect = 0.001
Identities = 51/220 (23%), Positives = 87/220 (39%), Gaps = 56/220 (25%)
Query: 157 KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVAD- 215
K +++ + N + G+ Y VG +G GK+T+L+ I L P DI+ + + D
Sbjct: 396 KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIER--LYDPTEGDIIINDSHNLKDI 453
Query: 216 -----------------------------------DLTAVESVLKADV--------KRTE 232
DL A+ + D KR
Sbjct: 454 NLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNS 513
Query: 233 LLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDR---- 288
A+CA ++ +L E+ + + I ++++L F A+ D+
Sbjct: 514 CRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIH-DFVSALPDKYETL 572
Query: 289 ----ATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
A+K SGG + R+S+ARA+ P +L+LDE T+ LD
Sbjct: 573 VGSNASK-LSGGQKQRISIARAIIRNPKILILDEATSSLD 611
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 44.7 bits (106), Expect = 7e-05
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA---VIWLDNYLQGWKKTLLI-VSHD 348
FSGG R RV +A AL P LL+ DEPT LD+ ++ L N L+ T +I ++HD
Sbjct: 162 FSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHD 221
Query: 349 QSFLDNVCNEII 360
+ +C++++
Sbjct: 222 LGVVAGICDKVL 233
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 44.6 bits (106), Expect = 7e-05
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 266 DSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
+ A+ +AR ++ +G + R+ SGG RV++A L +EP +L+LDEPT LD
Sbjct: 119 EDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD 177
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 44.3 bits (104), Expect = 7e-05
Identities = 49/215 (22%), Positives = 95/215 (44%), Gaps = 27/215 (12%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
IK+ + + + N N+ + ++GP+G GK+TLLR + ++ +
Sbjct: 5 IKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALN----RMNDIVSGA 60
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG-- 264
E V+ D+ E++ ++ L + + K I++ + A G
Sbjct: 61 RLEGAVLLDN----ENIYSPNLDVVNLRKRVGMV-----FQQPNPFPKSIFDNV-AFGPR 110
Query: 265 --ADSAEPRARRILAGLGFSRAMQDRATKNF-------SGGWRMRVSLARALYIEPTLLL 315
+A+ R ++ A+ D N SGG + R+ +AR L IEP ++L
Sbjct: 111 MLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVIL 170
Query: 316 LDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHD 348
+DEP + LD + + ++ +Q K+ T+ IV+H+
Sbjct: 171 MDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHN 205
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 44.4 bits (105), Expect = 7e-05
Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 43/222 (19%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRH-------IASRDLKV 199
I ++N +IS + N I G+ L+GP+G GK+T+LR I LK
Sbjct: 14 ISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKG 73
Query: 200 PPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQL--KEIY 257
+L+ ++ + VE V+R + F QQ K IY
Sbjct: 74 ----RVLFDGTDLYDPRVDPVE------VRRRIGMV---------F---QQPNPFPKSIY 111
Query: 258 EELKAIGA---------DSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALY 308
E + A GA D R+ R A + + + + SGG + R+ +AR +
Sbjct: 112 ENI-AFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIA 170
Query: 309 IEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHD 348
IEP ++L+DEP + LD + + ++ + KK T++IV+H+
Sbjct: 171 IEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHN 212
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 45.0 bits (107), Expect = 8e-05
Identities = 48/204 (23%), Positives = 82/204 (40%), Gaps = 74/204 (36%)
Query: 177 LVGPNGHGKTTLL---------------------RHIASRDLKVPPNIDILYCEQEV--- 212
+VGP G GK+TL+ R + L+ NI +++ Q+
Sbjct: 366 IVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLR--RNIAVVF--QDAGLF 421
Query: 213 ---VADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAE 269
+ D++ V + D E+ A + +A DF + + + E
Sbjct: 422 NRSIEDNI----RVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGE---------- 467
Query: 270 PRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD----- 324
R R++ SGG R R+++ARAL +P +L+LDE T+ LD
Sbjct: 468 -RGRQL------------------SGGERQRLAIARALLKDPPILILDEATSALDVETEA 508
Query: 325 -LNAVIWLDNYLQGWKKTLLIVSH 347
+ A LD ++G +T I++H
Sbjct: 509 KVKAA--LDELMKG--RTTFIIAH 528
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 44.8 bits (106), Expect = 9e-05
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 251 EQLKEIYEELKAIGADSAEPRARRILAGLGF--SRAMQDRATKNFSGGWRMRVSLARALY 308
EQ+ E + + A A+R+L + ++ + R SGG R RV +A AL
Sbjct: 125 EQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALS 184
Query: 309 IEPTLLLLDEPTNHLDLN---AVIWLDNYLQG-WKKTLLIVSHDQSFLDNVCNEIIHLDQ 364
P +L+ DEPT LD+ ++ L LQ ++ ++HD + + + ++ + Q
Sbjct: 185 CRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQ 244
Score = 41.4 bits (97), Expect = 0.001
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 256 IYEELKAIGADSAEPRARRI---LAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPT 312
I E L+ G + A R+ L +G R FSGG R R+ +ARAL + P
Sbjct: 424 IMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPK 483
Query: 313 LLLLDEPTNHLDLNAVIWLDNYLQGWKKTL----LIVSHDQSFLDNVCNEI 359
+++ DE + LD++ + N L ++ L +SHD + ++ + + +
Sbjct: 484 VIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRV 534
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 43.9 bits (103), Expect = 9e-05
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 287 DRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLI 344
+++ SGG + R+ +ARAL I+P +LL+DEP + LD A + ++ + + T+ I
Sbjct: 145 NKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAI 204
Query: 345 VSHD 348
V+H+
Sbjct: 205 VTHN 208
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 43.9 bits (104), Expect = 1e-04
Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 32/187 (17%)
Query: 178 VGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDL----TAVESVLKADVKRTEL 233
+GP+G GK+T+LR + +R +V P E EV+ D V+ V V+RT
Sbjct: 36 IGPSGCGKSTVLRTL-NRMHEVIPGA---RVEGEVLLDGEDLYGPGVDPVA---VRRTIG 88
Query: 234 LAECAKLEAADFSSEQQEQLKEIYEE----LKAIGADS---AEPRARRILAGLGFSRAMQ 286
+ F I + LK G + + + L G ++
Sbjct: 89 MV---------FQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK 139
Query: 287 DRATK---NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--T 341
DR K SGG + R+ +ARA+ +EP +LL+DEP + LD + + +++ + K+ T
Sbjct: 140 DRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYT 199
Query: 342 LLIVSHD 348
++IV+H+
Sbjct: 200 IVIVTHN 206
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 44.1 bits (104), Expect = 1e-04
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL 325
SGG R R+SLARA+Y + L LLD P +LD+
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 43.7 bits (103), Expect = 1e-04
Identities = 46/197 (23%), Positives = 90/197 (45%), Gaps = 25/197 (12%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI----DILYCEQEVVADDLTA 219
N NL I ++GP+G GK+T ++ + + +++ PN+ ++ Y ++ +
Sbjct: 30 NINLSIPENEVTAIIGPSGCGKSTFIKTL-NLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88
Query: 220 VE------SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRAR 273
VE V + + + + ++ +++L+EI E+ A E + R
Sbjct: 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDR 148
Query: 274 RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDN 333
L S GG + R+ +ARAL P +LL+DEPT+ LD + ++
Sbjct: 149 LHTQALSLS------------GGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEE 196
Query: 334 YLQGWKK--TLLIVSHD 348
+ K+ T++IV+H+
Sbjct: 197 LILKLKEKYTIVIVTHN 213
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 43.9 bits (103), Expect = 1e-04
Identities = 53/223 (23%), Positives = 98/223 (43%), Gaps = 33/223 (14%)
Query: 142 ENAVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIAS-RDLKVP 200
+N I+ EN ++ N N+ I L+GP+G GK+T LR + DL
Sbjct: 3 KNEAIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEG 62
Query: 201 PNID--ILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSS--------EQQ 250
I+ ++Y + + +++ +E L+ + + D S + +
Sbjct: 63 IKIEGNVIYEGKNIYSNNFDILE--LRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDK 120
Query: 251 EQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKN---FSGGWRMRVSLARAL 307
++L EI E + L ++D+ N SGG + R+ +AR L
Sbjct: 121 KKLDEIVE---------------QSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTL 165
Query: 308 YIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHD 348
IEP ++L+DEPT+ LD + ++ + K+ T++IV+H+
Sbjct: 166 AIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHN 208
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 43.9 bits (104), Expect = 1e-04
Identities = 22/57 (38%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHD 348
SGG + R+ +ARA+ ++P +LL+DEP + LD + + L+ + KK T++IV+H+
Sbjct: 165 SGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHN 221
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 43.5 bits (102), Expect = 1e-04
Identities = 54/213 (25%), Positives = 94/213 (44%), Gaps = 24/213 (11%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
IKVEN ++ N ++ I L+GP+G GK+T +R + +R + N I
Sbjct: 13 IKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCL-NRMNDLIKNCRI- 70
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEEL----KA 262
E +V + E + + DV EL + F + IY+ + +
Sbjct: 71 --EGKVSIEG----EDIYEPDVDVVELRKNVGMV----FQKPNPFPM-SIYDNVAYGPRI 119
Query: 263 IGADSAEPRA--RRILAGLGFSRAMQDRATK---NFSGGWRMRVSLARALYIEPTLLLLD 317
GA+ + L DR + SGG + R+ +AR L ++P ++L D
Sbjct: 120 HGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFD 179
Query: 318 EPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHD 348
EPT+ LD + +++ + KK T++IV+H+
Sbjct: 180 EPTSALDPISTARIEDLIMNLKKDYTIVIVTHN 212
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 43.5 bits (103), Expect = 1e-04
Identities = 24/56 (42%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSH 347
SGG + R+ +ARA+ IEP +LLLDEPT+ LD + + ++ + K T++IV+H
Sbjct: 170 SGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTH 225
Score = 32.3 bits (74), Expect = 0.51
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 146 DIKVENFSISAKGNDLFV-------NANLLIANGRRYGLVGPNGHGKTTLLR 190
++ E ++ + +LF + ++ I R +GP+G GK+TLLR
Sbjct: 18 NLSDEQTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLR 69
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 43.1 bits (101), Expect = 2e-04
Identities = 23/65 (35%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
Query: 288 RATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK----KTLL 343
++ + SGG + R+ +ARAL ++P +LL+DEP LD A + +++ +Q + T++
Sbjct: 146 KSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMV 205
Query: 344 IVSHD 348
IVSH+
Sbjct: 206 IVSHN 210
Score = 28.5 bits (63), Expect = 9.4
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLR 190
IKV N S + ++ I + ++GP+G GK+T L+
Sbjct: 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLK 51
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 44.0 bits (104), Expect = 2e-04
Identities = 53/237 (22%), Positives = 95/237 (40%), Gaps = 47/237 (19%)
Query: 129 SQMEKTGGQLAALENAVDIKVENFSISAKGNDLFVNA-NLLIANGRRYGLVGPNGHGKTT 187
S + G + +N IK EN + D+ + + + + +G + GPNG GK++
Sbjct: 436 SNLVPGRGIVEYQDNG--IKFENIPLVTPNGDVLIESLSFEVPSGNNLLICGPNGCGKSS 493
Query: 188 LLRHIA------SRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLE 241
L R + L P + Y Q T + ++ D
Sbjct: 494 LFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPD-------------- 539
Query: 242 AADFSSEQQEQ-------LKEIYEELKAIGADSAEPRARRILA-GLGFSRAMQDRATKNF 293
SSE ++ L++I + ++ IL G+S A+QD
Sbjct: 540 ----SSEDMKRRGLSDKDLEQILDNVQL----------THILEREGGWS-AVQD-WMDVL 583
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQS 350
SGG + R+++AR Y +P +LDE T+ + ++ ++ + + TL VSH +S
Sbjct: 584 SGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKS 640
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 44.1 bits (104), Expect = 2e-04
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL 325
SGG R R+SLARA+Y + L LLD P HLD+
Sbjct: 549 LSGGQRARISLARAVYKDADLYLLDSPFTHLDV 581
Score = 33.0 bits (75), Expect = 0.50
Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 29/151 (19%)
Query: 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFL 352
S G + + LAR++ + +LLLDEP+ HLD LQ +KTL QSF
Sbjct: 1354 LSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVT-------LQIIRKTL-----KQSFS 1401
Query: 353 DNVCNEIIH-------LDQQKLYYYKGN----YSMFKKMYAQKSKERMKEFEKQEKRIKE 401
+ C I+ L+ Q+ +G+ Y +K+ + S K+ R+K
Sbjct: 1402 N--CTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETS--LFKQAMSAADRLKL 1457
Query: 402 LKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQ 432
H + +++K + +T +E+ + ++Q
Sbjct: 1458 FPLH--RRNSSKRKPQPKITALREEAEEEVQ 1486
Score = 30.3 bits (68), Expect = 3.5
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 12/81 (14%)
Query: 114 KGGQGHSELGDNFTI--SQMEK---TGGQLAALENAVDIKVENFSISAKGNDLFVNANLL 168
GG G +L I +K +GGQ+ D++ + G + + +
Sbjct: 1189 SGGGGKYQLSTVLVIENPHAQKCWPSGGQM-------DVQGLTAKYTEAGRAVLQDLSFS 1241
Query: 169 IANGRRYGLVGPNGHGKTTLL 189
+ G+R GL+G G GK+TLL
Sbjct: 1242 VEGGQRVGLLGRTGSGKSTLL 1262
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 43.9 bits (104), Expect = 2e-04
Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 263 IGADSAEPRARRILAG-----LGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLD 317
IG A ++ LA LG + D + S G + + RAL PTLL+LD
Sbjct: 367 IGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILD 426
Query: 318 EPTNHLD-LNAVI---WLDNYLQGWKKTLLIVSHDQ 349
EP LD LN + ++D + + LL VSH
Sbjct: 427 EPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHA 462
Score = 40.0 bits (94), Expect = 0.003
Identities = 40/184 (21%), Positives = 63/184 (34%), Gaps = 56/184 (30%)
Query: 166 NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225
+L + G + VG NG GK+ L R +A +L + +
Sbjct: 23 SLTLNAGDSWAFVGANGSGKSALAR---------------------ALAGELPLLSGERQ 61
Query: 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD------------------- 266
+ L S EQ ++L +E + D
Sbjct: 62 SQFSHITRL-----------SFEQLQKLVS--DEWQRNNTDMLSPGEDDTGRTTAEIIQD 108
Query: 267 --SAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
R ++ G + A+ DR K S G + L +AL EP LL+LDEP + LD
Sbjct: 109 EVKDPARCEQLAQQFGIT-ALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLD 167
Query: 325 LNAV 328
+ +
Sbjct: 168 VASR 171
Score = 28.8 bits (65), Expect = 8.3
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 119 HSELGDNFTISQMEKTGGQLAALENAVDIKVENFSISAKGNDLFVNANLLIANGRRYGLV 178
HSE + + + ++ + A N I + N +S + N + + G + +V
Sbjct: 233 HSEQLEGVQLPEPDEPSARHALPANEPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIV 292
Query: 179 GPNGHGKTTLL 189
GPNG GK+TLL
Sbjct: 293 GPNGAGKSTLL 303
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 42.9 bits (101), Expect = 2e-04
Identities = 22/57 (38%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSH 347
SGG + R+ +AR + +EP ++L+DEPT+ LD A ++ ++ KK T++IV+H
Sbjct: 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTH 202
Score = 30.2 bits (68), Expect = 2.6
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 149 VENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLR 190
+EN + N + NL I + L+GP+G GK+TLLR
Sbjct: 6 IENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLR 47
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 43.1 bits (102), Expect = 2e-04
Identities = 50/195 (25%), Positives = 80/195 (41%), Gaps = 28/195 (14%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
N G L+GPNG GK+TL H + P + ++L +
Sbjct: 20 GINFKAEKGEMVALLGPNGAGKSTLFLHF--NGILKPTSGEVLIKGEP------------ 65
Query: 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA-------DSAEPRARRIL 276
+K D K L E K F + + EE A G + E R + L
Sbjct: 66 IKYDKKS---LLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEAL 122
Query: 277 AGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQ 336
+G +++ + SGG + RV++A L ++P +++LDEPT+ LD + L
Sbjct: 123 KAVGME-GFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLY 181
Query: 337 GWKK---TLLIVSHD 348
K T++I +HD
Sbjct: 182 DLNKEGITIIISTHD 196
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 43.1 bits (101), Expect = 2e-04
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHD 348
+ SGG + R+ +ARA+ EP +LLLDEP + LD A ++ + KK T+ +V+H+
Sbjct: 149 SLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHN 207
Score = 29.2 bits (65), Expect = 5.7
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHI 192
++++ I G +GP+G GK+T+LR +
Sbjct: 26 DSHVPIRKNEITGFIGPSGCGKSTVLRSL 54
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 42.9 bits (101), Expect = 2e-04
Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHDQS 350
SGG + R+ +AR L + P ++L+DEP + LD A +++ ++ KK T++IV+H+
Sbjct: 151 SGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQ 209
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 41.2 bits (96), Expect = 2e-04
Identities = 41/191 (21%), Positives = 64/191 (33%), Gaps = 71/191 (37%)
Query: 172 GRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRT 231
G +VGP G GKTTL R +A R+L PP ++Y
Sbjct: 2 GEVILIVGPPGSGKTTLARALA-RELG-PPGGGVIY------------------------ 35
Query: 232 ELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATK 291
++ D E +QL I K
Sbjct: 36 --------IDGEDILEEVLDQLLLIIVGGKKASGSGEL---------------------- 65
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD---------LNAVIWLDNYLQGWKKTL 342
R+R++LA A ++P +L+LDE T+ LD L + L T+
Sbjct: 66 ------RLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTV 119
Query: 343 LIVSHDQSFLD 353
++ ++D+ L
Sbjct: 120 ILTTNDEKDLG 130
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 43.0 bits (101), Expect = 3e-04
Identities = 67/287 (23%), Positives = 115/287 (40%), Gaps = 55/287 (19%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDI-----LYCEQEVVADDLT 218
N + + G G++G NG GK+TL IA + +DI L + LT
Sbjct: 42 NISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLT 101
Query: 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYE---ELKAIGADSAEPRARRI 275
+E++ EL L +E++KEI E IG +P
Sbjct: 102 GIENI--------ELKGLMMGL--------TKEKIKEIIPEIIEFADIGKFIYQP----- 140
Query: 276 LAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD---LNAVIWLD 332
K +S G + R+ A +++I P +L++DE + D +
Sbjct: 141 --------------VKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKM 186
Query: 333 NYLQGWKKTLLIVSHDQSFLDNVCNEI--IHLDQQKLY----YYKGNYSMFKKMYAQKSK 386
N + KT+ +SH S + + C + +H Q K Y +Y F K Y Q S
Sbjct: 187 NEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDEFLKKYNQMSV 246
Query: 387 ERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQK 433
E K+F +E++I + + HG ++ + ++ K+ K K ++
Sbjct: 247 EERKDF--REEQISQFQ-HGLLQEDQTGRERKRKKGKKTSRKFKKKR 290
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 42.3 bits (100), Expect = 3e-04
Identities = 63/246 (25%), Positives = 108/246 (43%), Gaps = 53/246 (21%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
++++N S N++ NL I G + ++GPNG GK+TL + IA DIL
Sbjct: 8 LEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDIL 67
Query: 207 YCEQEVVADDLTAVESVLKADVKRTEL---LA-----ECAKLEAADF------SSEQQEQ 252
+ + ++ DL E R L LA E + ADF S + +
Sbjct: 68 FKGESIL--DLEPEE--------RAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQG 117
Query: 253 LKE---------IYEELKAIGADSAEPRARRILAGLGF-SRAMQDRATKNFSGGWRMRVS 302
L E I E+LK +G D + F SR + + FSGG + R
Sbjct: 118 LPELDPLEFLEIINEKLKLVGMDPS------------FLSRNVNE----GFSGGEKKRNE 161
Query: 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLD---NYLQGWKKTLLIVSHDQSFLDNVCNEI 359
+ + ++ L +LDE + LD++A+ + N L + ++++++H Q LD + +
Sbjct: 162 ILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDY 221
Query: 360 IHLDQQ 365
+H+ Q
Sbjct: 222 VHVMQN 227
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 43.2 bits (102), Expect = 4e-04
Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 38/171 (22%)
Query: 161 LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR----DLKVPPNIDILYCEQEVVADD 216
L + ++ + G+ ++G G GK+TLL+ + S+ + +V I Y Q+ +
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMN 734
Query: 217 LTAVESVLKADVKRTELLAE---CAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRAR 273
T ++L D + LA+ ++LEA D + EI E K +
Sbjct: 735 ATVRGNILFFDEEDAARLADAVRVSQLEA-DLAQLGGGLETEIGE--KGV---------- 781
Query: 274 RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
N SGG + RVSLARA+Y + LLD+P + LD
Sbjct: 782 ------------------NLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 41.6 bits (98), Expect = 5e-04
Identities = 54/212 (25%), Positives = 88/212 (41%), Gaps = 64/212 (30%)
Query: 172 GRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI----------DIL----------YCEQE 211
G+ GLVGPNG GK+T L+ +A K+ PN+ +IL Y +
Sbjct: 26 GQVLGLVGPNGIGKSTALKILAG---KLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK- 81
Query: 212 VVADDLTA------VESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA 265
++ D+ V+ + KA + L L+ D ++ +L E+ ++L+
Sbjct: 82 LLEGDVKVIVKPQYVDLIPKAVKGKVGEL-----LKKKD----ERGKLDELVDQLEL--- 129
Query: 266 DSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD- 324
R + DR SGG RV++A AL + DEP+++LD
Sbjct: 130 -----------------RHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDI 172
Query: 325 ---LNAVIWLDNYLQGWKKTLLIVSHDQSFLD 353
LNA + + +L+V HD + LD
Sbjct: 173 KQRLNAARLIRELAED-DNYVLVVEHDLAVLD 203
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 42.1 bits (100), Expect = 5e-04
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 260 LKAIGADSAEPRAR--RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLD 317
L+ G AE +AR +L +G S DR SGG + RV++ARAL P +LL D
Sbjct: 107 LELAGTPKAEIKARVTELLELVGLS-DKADRYPAQLSGGQKQRVAIARALASNPKVLLCD 165
Query: 318 EPTNHLD 324
E T+ LD
Sbjct: 166 EATSALD 172
Score = 32.1 bits (74), Expect = 0.78
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 147 IKVENFSISAKGNDLFVNA----NLLIANGRRYGLVGPNGHGKTTLLRHI 192
I+++N S ++A +L I G +G++G +G GK+TL+R I
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCI 51
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 42.1 bits (100), Expect = 5e-04
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 260 LKAIGADSAEPRAR-----RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLL 314
LK G AE R RIL L + DR + SGG R RV++ RA+ EP +
Sbjct: 101 LKIRGMPKAEIEERVAEAARIL-ELE---PLLDRKPRELSGGQRQRVAMGRAIVREPAVF 156
Query: 315 LLDEPTNHLD 324
L DEP ++LD
Sbjct: 157 LFDEPLSNLD 166
Score = 35.2 bits (82), Expect = 0.074
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 166 NLLIANGRRYGLVGPNGHGKTTLLRHIA 193
+L +A+G LVGP+G GK+TLLR +A
Sbjct: 24 DLDVADGEFIVLVGPSGCGKSTLLRMVA 51
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 41.7 bits (98), Expect = 5e-04
Identities = 41/215 (19%), Positives = 89/215 (41%), Gaps = 24/215 (11%)
Query: 172 GRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI-DILYCEQEVVADDLTAVESVLKADVKR 230
G+ ++G NG GK+TL + +A + P +IL + + D KR
Sbjct: 39 GQTLAIIGENGSGKSTLAKMLAG---MIEPTSGEILINDHPLHFGDY-------SFRSKR 88
Query: 231 TELLAECAKLEAADFSSEQQEQLKEIYEE-LKAIGADSAEPRARRILAGLGFSRAMQDRA 289
++ + + S + ++ +I + L+ E R ++I L + D A
Sbjct: 89 IRMI-----FQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHA 143
Query: 290 T---KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLI-- 344
+ G + RV+LARAL + P +++ DE LD++ L N + ++ I
Sbjct: 144 NYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISY 203
Query: 345 --VSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377
V+ + ++ ++++ + + ++ +
Sbjct: 204 IYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL 238
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 41.5 bits (98), Expect = 5e-04
Identities = 48/219 (21%), Positives = 84/219 (38%), Gaps = 52/219 (23%)
Query: 177 LVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV-------VA--------------D 215
L+GPNG GKTT+ + P IL Q + +A
Sbjct: 36 LIGPNGAGKTTVFNCLTG--FYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFR 93
Query: 216 DLTAVESVLKADVK--RTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRAR 273
++T +E++L A + +T L + K A F + E L L+ +G
Sbjct: 94 EMTVIENLLVAQHQQLKTGLFSGLLKTPA--FRRAESEALDRAATWLERVGL-------- 143
Query: 274 RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHL------DLNA 327
+R N + G + R+ +AR + +P +L+LDEP L +L+
Sbjct: 144 ---------LEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDE 194
Query: 328 VIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQK 366
+I T+L++ HD + + + I ++Q
Sbjct: 195 LI--AELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGT 231
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 41.6 bits (98), Expect = 6e-04
Identities = 53/230 (23%), Positives = 92/230 (40%), Gaps = 32/230 (13%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAV--- 220
N + + G +GL+GPNG GKTT R I L P +I + + + +
Sbjct: 20 NISFEVPPGEIFGLLGPNGAGKTTTFRMIL--GLLEPTEGEITWNGGPLSQEIKNRIGYL 77
Query: 221 --ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAG 278
E L + + L A+L+ EI ++L+A L
Sbjct: 78 PEERGLYPKMTVEDQLKYLAELKGMP--------KAEIQKKLQA------------WLER 117
Query: 279 LGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNY---L 335
L + K S G + ++ A+ EP LL+LDEP + LD V L + L
Sbjct: 118 LEIVGKKTKK-IKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFEL 176
Query: 336 QGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKS 385
+ T++ SH ++ +C+ ++ L + + Y G ++ + +K
Sbjct: 177 KEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLY-GTVEDIRRSFGKKR 225
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 40.5 bits (96), Expect = 7e-04
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAV-----IWLDNYLQGWKKTLLIVSHD 348
SGG + +V LAR L +P +L+LDEPT +D+ A + + G K +L++S +
Sbjct: 106 SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAG--KAVLLISSE 163
Query: 349 QSFLDNVCNEIIHLDQQKL 367
L +C+ I+ + + ++
Sbjct: 164 LDELLGLCDRILVMYEGRI 182
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 41.4 bits (97), Expect = 7e-04
Identities = 51/207 (24%), Positives = 85/207 (41%), Gaps = 34/207 (16%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
+A+ + G LVG NG GK+TL + + I IL + L
Sbjct: 25 DASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISIL---GQPTRQAL------ 75
Query: 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG-------ADSAEPRARRIL 276
+ L+A + E D+S + E++ +G A+ R R+I+
Sbjct: 76 ------QKNLVAYVPQSEEVDWS------FPVLVEDVVMMGRYGHMGWLRRAKKRDRQIV 123
Query: 277 AGLGFSRAMQD---RATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA---VIW 330
M + R SGG + RV LARA+ + ++LLDEP +D+ +I
Sbjct: 124 TAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIIS 183
Query: 331 LDNYLQGWKKTLLIVSHDQSFLDNVCN 357
L L+ KT+L+ +H+ + C+
Sbjct: 184 LLRELRDEGKTMLVSTHNLGSVTEFCD 210
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 40.9 bits (96), Expect = 8e-04
Identities = 19/57 (33%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHD 348
SGG + R+ +ARA+ ++P ++L+DEP + LD + + ++ + K+ T++IV+H+
Sbjct: 153 SGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHN 209
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 41.8 bits (98), Expect = 0.001
Identities = 54/197 (27%), Positives = 76/197 (38%), Gaps = 32/197 (16%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
N NL I G +VG +G GKTTLLR I E
Sbjct: 401 NLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRG--------------------EEK 440
Query: 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKE--IYEELKAIGADSAEPRARRILAGLGF 281
+ D + E+ +A E + + E I E L++ D A IL G
Sbjct: 441 YRPDSGKVEVPKNTV---SALIPGEYEPEFGEVTILEHLRSKTGDLNA--AVEILNRAGL 495
Query: 282 SRAMQDRATKN-FSGGWRMRVSLARALYIEPTLLLLDEPTNHLD-LNAVIW---LDNYLQ 336
S A+ R + S G + R LA+ L P +LL+DE HLD L AV + +
Sbjct: 496 SDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAR 555
Query: 337 GWKKTLLIVSHDQSFLD 353
TL++V+H +
Sbjct: 556 EAGITLIVVTHRPEVGN 572
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 40.4 bits (95), Expect = 0.001
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 10/119 (8%)
Query: 258 EELKAIGADSAEPRARRILAGLGFSRAMQDRATKNF----SGGWRMRVSLARALYIEPTL 313
E L+++G S + RA + A + K + SGG RV +A AL +EP
Sbjct: 87 ETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPF 146
Query: 314 LLLDEPTNHLDL-NAVIWLDNYLQGWKK----TLLIVSHDQSFLDNVCNEIIHLDQQKL 367
L+ DEPT LD+ N L L+ ++ +L+++HD + + +E+ +D ++
Sbjct: 147 LIADEPTTDLDVVNQARVLK-LLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRI 204
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 40.2 bits (94), Expect = 0.001
Identities = 58/212 (27%), Positives = 77/212 (36%), Gaps = 49/212 (23%)
Query: 159 NDLFVNANLL-----IANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVV 213
ND+ + L + G LVGPNG GK+TLL +A + +
Sbjct: 7 NDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG----------MTSGSGSIQ 56
Query: 214 AD--DLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKE--IYEELKAIGADSAE 269
L A E A+ A + S+QQ ++ L D
Sbjct: 57 FAGQPLEAWS------------ATELARHRA--YLSQQQTPPFAMPVWHYLTLHQPDKTR 102
Query: 270 PRARRILAGLGFSRAMQD---RATKNFSGGWRMRVSLARA-LYIEPT------LLLLDEP 319
+AG A+ D R+T SGG RV LA L I P LLLLDEP
Sbjct: 103 TELLNDVAGA---LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEP 159
Query: 320 TNHLDLNAVIWLDNYLQ---GWKKTLLIVSHD 348
N LD+ LD L +++ SHD
Sbjct: 160 MNSLDVAQQSALDRLLSALCQQGLAIVMSSHD 191
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 40.3 bits (94), Expect = 0.001
Identities = 20/58 (34%), Positives = 40/58 (68%), Gaps = 2/58 (3%)
Query: 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHD 348
SGG + R+ +AR + ++P ++L+DEPT+ LD + + +++ + KK T++IV+H+
Sbjct: 148 LSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHN 205
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 40.1 bits (94), Expect = 0.002
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 12/93 (12%)
Query: 263 IGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNH 322
+ D E R L + +D+ + S G + RV++A L ++P +++LDEP +
Sbjct: 110 LDKDEVERRVEEALKAVRM-WDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAY 168
Query: 323 LD------LNAVIW-LDNYLQGWKKTLLIVSHD 348
LD L ++ L N QG KT+++ +HD
Sbjct: 169 LDPRGQETLMEILDRLHN--QG--KTVIVATHD 197
Score = 38.2 bits (89), Expect = 0.008
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 147 IKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHI 192
I+VE+ K G +L I G + L+GPNG GK+TLL H+
Sbjct: 5 IEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHL 51
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 40.8 bits (96), Expect = 0.002
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 271 RARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA 327
R RR L + F+ A ++A + SGG + +V +A+ L P LL++DEPT +D++A
Sbjct: 385 RYRRAL-NIKFNHA--EQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSA 438
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 40.2 bits (94), Expect = 0.002
Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 31/186 (16%)
Query: 177 LVGPNGHGKTTLLRHIAS-RDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLA 235
++GP+G GK+T LR I DL ID E E+ ++V ADV L
Sbjct: 70 MIGPSGCGKSTFLRCINRMNDL-----IDAARVEGELTFRG----KNVYDADVDPVALRR 120
Query: 236 ECAKL--EAADFSSEQQEQLKEIYE------ELKAIGADSAEPRARRILAGLGFSRAMQD 287
+ + F K IY+ +++ D E R L ++D
Sbjct: 121 RIGMVFQKPNPFP-------KSIYDNVAYGLKIQGYDGDIDE-RVEESLRRAALWDEVKD 172
Query: 288 RATK---NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TL 342
+ + SGG + R+ +ARA+ +P ++L+DEP + LD A +++ ++ + T+
Sbjct: 173 QLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTV 232
Query: 343 LIVSHD 348
+IV+H+
Sbjct: 233 VIVTHN 238
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 39.7 bits (93), Expect = 0.002
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 258 EELKAIGADSAEPRARRILAGLGFSRAMQDRATKNF----SGGWRMRVSLARALYIEPTL 313
E A+G + + L +G A R K + SGG R+ +A AL E
Sbjct: 104 ETCLALGKPADDATLTAALEAVGLENA--ARVLKLYPFEMSGGMLQRMMIALALLCEAPF 161
Query: 314 LLLDEPTNHLDLNAVIWLDNYLQGWKKT----LLIVSHD 348
++ DEPT LD+ A + + L+ + +L+V+HD
Sbjct: 162 IIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHD 200
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 40.0 bits (93), Expect = 0.002
Identities = 51/200 (25%), Positives = 84/200 (42%), Gaps = 36/200 (18%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVAD--DLTAVE 221
+A+L I G + ++G +G GK+T++R + N I +V+ D D+ +
Sbjct: 46 DASLAIEEGEIFVIMGLSGSGKSTMVRLL---------NRLIEPTRGQVLIDGVDIAKIS 96
Query: 222 SVLKADVKRTE---------LLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRA 272
+V+R + L+ L+ F E L I A+ +A
Sbjct: 97 DAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGME-----------LAGINAEERREKA 145
Query: 273 RRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLD 332
L +G + SGG R RV LARAL I P +LL+DE + LD +
Sbjct: 146 LDALRQVGLENYAHSYPDE-LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQ 204
Query: 333 NYL----QGWKKTLLIVSHD 348
+ L ++T++ +SHD
Sbjct: 205 DELVKLQAKHQRTIVFISHD 224
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 39.4 bits (92), Expect = 0.002
Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 26/160 (16%)
Query: 179 GPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECA 238
G NG GKTTLLR +A +L+ E + D ++ + D R+ +A
Sbjct: 44 GDNGAGKTTLLRVLAG----------LLHVESGQIQID---GKTATRGD--RSRFMAYLG 88
Query: 239 KLEA--ADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGG 296
L AD S+ + L + A+ LA +G + +D + S G
Sbjct: 89 HLPGLKADLSTLENLHF------LCGLHGRRAKQMPGSALAIVGLA-GYEDTLVRQLSAG 141
Query: 297 WRMRVSLARALYIEPT-LLLLDEPTNHLDLNAVIWLDNYL 335
+ R++LAR L++ P L LLDEP +LDL + ++ +
Sbjct: 142 QKKRLALAR-LWLSPAPLWLLDEPYANLDLEGITLVNRMI 180
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 39.8 bits (93), Expect = 0.002
Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 12/114 (10%)
Query: 273 RRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA---VI 329
R +LA +G D N SGG + RV++A L +EP +++LDE T+ LD ++
Sbjct: 125 RDVLADVGMLD-YIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQIL 183
Query: 330 WLDNYLQGWKKTLLIVS--HDQSFLD--NVCNEIIHLDQQKLYYYKGNYSMFKK 379
L L+ K L ++S HD +D N+ ++++ LD KL +F K
Sbjct: 184 KLIRKLKK-KNNLTVISITHD---IDEANMADQVLVLDDGKLLAQGSPVEIFSK 233
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 39.8 bits (93), Expect = 0.002
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 285 MQDRATKN---FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK- 340
+ DR N SGG + R+ +AR L ++P ++L+DEP + LD A +++ ++ +
Sbjct: 190 VNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE 249
Query: 341 -TLLIVSHD 348
T+++V+H+
Sbjct: 250 YTVVVVTHN 258
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 39.6 bits (93), Expect = 0.003
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
SGG + R+ +AR + I P +LLLDEP + LD
Sbjct: 158 SGGQQQRLCIARGIAIRPEVLLLDEPCSALD 188
Score = 33.1 bits (76), Expect = 0.27
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLR 190
N NL IA + +GP+G GK+TLLR
Sbjct: 31 NINLDIAKNQVTAFIGPSGCGKSTLLR 57
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 39.2 bits (91), Expect = 0.003
Identities = 21/69 (30%), Positives = 44/69 (63%), Gaps = 5/69 (7%)
Query: 285 MQDRATKN---FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK- 340
++DR N SGG + R+ +AR + ++P ++L+DEP + LD + + ++ ++ K+
Sbjct: 138 VKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEK 197
Query: 341 -TLLIVSHD 348
T++IV+H+
Sbjct: 198 YTIIIVTHN 206
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 39.2 bits (91), Expect = 0.003
Identities = 51/182 (28%), Positives = 78/182 (42%), Gaps = 26/182 (14%)
Query: 176 GLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLA 235
GLVG NG GK+TL +++ L P +L+ + + D + LLA
Sbjct: 31 GLVGANGCGKSTLFMNLSG--LLRPQKGAVLWQGKPL--------------DYSKRGLLA 74
Query: 236 ECAKLEAADFSSEQQEQLKEIYEE----LKAIGADSAEPRARRILAGLGFSRAMQDR--A 289
++ EQQ +I + L+ +G AE RR+ L A R
Sbjct: 75 LRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEI-TRRVDEALTLVDAQHFRHQP 133
Query: 290 TKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD---LNAVIWLDNYLQGWKKTLLIVS 346
+ S G + RV++A AL ++ LLLDEPT LD +I + + ++I S
Sbjct: 134 IQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISS 193
Query: 347 HD 348
HD
Sbjct: 194 HD 195
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 39.6 bits (93), Expect = 0.004
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 286 QDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA 327
++A SGG + +V++AR L P +L+LDEPT +D+ A
Sbjct: 389 MEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGA 430
Score = 29.6 bits (67), Expect = 4.7
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTL---LRHIASRD 196
A L + GR LVG NG GK+T+ L I +RD
Sbjct: 22 GAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD 57
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 39.6 bits (93), Expect = 0.004
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 12/98 (12%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHDQSF 351
SGG R R+++ARAL + +L+LDE T+ LD + + L +K T L+++H S
Sbjct: 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLST 541
Query: 352 LDNVCNEIIHLDQ---------QKLYYYKGNYSMFKKM 380
++ +EI+ ++ +L G Y+ KM
Sbjct: 542 IEKA-DEILVVEDGEIVERGTHAELLAQNGVYAQLHKM 578
Score = 29.2 bits (66), Expect = 7.3
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 126 FTISQM--EKTGGQLAALENAVDIKVEN--FSISAKGNDLFVNANLLIANGRRYGLVGPN 181
F I + EK G+ DI+ N F+ K N N I G+ LVG +
Sbjct: 319 FAILDLEQEKDEGKRVIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRS 378
Query: 182 GHGKTTL 188
G GK+T+
Sbjct: 379 GSGKSTI 385
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 39.6 bits (92), Expect = 0.005
Identities = 58/212 (27%), Positives = 88/212 (41%), Gaps = 35/212 (16%)
Query: 166 NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVAD---DLTAVES 222
+L IA G +VG NG GK+TL + L +P +IL V AD D + S
Sbjct: 362 DLRIAQGDIVFIVGENGCGKSTLAKLFCG--LYIPQEGEILLDGAAVSADSRDDYRDLFS 419
Query: 223 VLKADVKRTELLAECAKLEAADFSSEQQE-QLKEIYEELKAIGADSAEPRARRILAGLGF 281
+ AD + L + E A + QQ Q EI +++K + GF
Sbjct: 420 AIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVK--------------IEDGGF 465
Query: 282 SRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDE------PTNHLDLNAVIWLDNYL 335
S T S G + R++L A + +LL DE P + D
Sbjct: 466 S------TTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKR 519
Query: 336 QGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
QG KT++I+SHD + + + ++II L +
Sbjct: 520 QG--KTIIIISHDDQYFE-LADQIIKLAAGCI 548
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 38.2 bits (90), Expect = 0.005
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 291 KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
+N S G R + LARAL + +L+LDE T +D
Sbjct: 138 ENLSVGQRQLLCLARALLRKSKILVLDEATASVD 171
Score = 29.4 bits (67), Expect = 3.8
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 146 DIKVENFSISAKGNDLFV--NANLLIANGRRYGLVGPNGHGKTTLL 189
DI+ +N S+ + N V N + I G + G+VG G GK++LL
Sbjct: 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLL 47
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 38.2 bits (89), Expect = 0.007
Identities = 47/225 (20%), Positives = 92/225 (40%), Gaps = 53/225 (23%)
Query: 147 IKVENFSISAKGNDLFV--NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNID 204
I +N S + + F + + I G+ +VG NG GK+T+ + + ++ + +
Sbjct: 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIG--IEKVKSGE 65
Query: 205 ILYCEQEVVADDLTA----------------VESVLKADVKRTELLAECAKLEAADFSSE 248
I Y Q + D+ V S++K DV LE +
Sbjct: 66 IFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDV--------AFGLENHAVPYD 117
Query: 249 Q-QEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARAL 307
+ ++ E +++ + EP A SGG + RV++A L
Sbjct: 118 EMHRRVSEALKQVDMLERADYEPNA--------------------LSGGQKQRVAIAGVL 157
Query: 308 YIEPTLLLLDEPTNHLDLNA---VIWLDNYLQGWKK-TLLIVSHD 348
+ P++++LDE T+ LD +A ++ L ++ T++ ++HD
Sbjct: 158 ALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHD 202
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 37.3 bits (87), Expect = 0.008
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 278 GLGFSRAMQDRATKNFSGGWRMRVSLARALY--IEPTLLLLDEPTNHLDLNAVIWLDNYL 335
GLG+ + SGG RV LA L+ TL +LDEP+ L + L +
Sbjct: 75 GLGYLTL--GQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVI 132
Query: 336 QGW---KKTLLIVSHDQSFLD 353
+G T++++ H+ L
Sbjct: 133 KGLIDLGNTVILIEHNLDVLS 153
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 37.8 bits (88), Expect = 0.009
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 259 ELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDE 318
E K I + + R L +G ++R SGG + RV++A A+ + P +++LDE
Sbjct: 108 ENKGIPHEEMKERVNEALELVGMQ-DFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDE 166
Query: 319 PTNHLDLNAVIWLDNYLQGWKK----TLLIVSHDQSFLDNV 355
T+ LD + L ++G + T++ ++HD LD V
Sbjct: 167 ATSMLDPEGRLELIKTIKGIRDDYQMTVISITHD---LDEV 204
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 37.4 bits (87), Expect = 0.010
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 13/86 (15%)
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW------KKTLLIV 345
N S G R + LARAL P +L+LDE T +D D +Q T+L +
Sbjct: 125 NLSQGQRQLLCLARALLKRPRVLVLDEATASIDYAT----DALIQKTIREEFTNSTILTI 180
Query: 346 SHD-QSFLDNVCNEIIHLDQQKLYYY 370
+H ++ +D ++I+ +D ++ Y
Sbjct: 181 AHRLRTIID--YDKILVMDAGEVKEY 204
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 37.8 bits (88), Expect = 0.010
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 9/115 (7%)
Query: 255 EIYEELKA-IGADSAEPRARRI----LAGLGFSRAMQDRATKNFSGGWRMRVSLARALYI 309
+I E +K G + R R I G+ + D SGG RV +A A+
Sbjct: 111 QIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIAC 170
Query: 310 EPTLLLLDEPTNHLDLN---AVIWLDNYLQGWKK-TLLIVSHDQSFLDNVCNEII 360
P LL+ DEPT LD+ +I L LQ + L++++HD + + ++II
Sbjct: 171 RPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKII 225
>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the
sulfonylurea receptor SUR. The SUR domain 2. The
sulfonylurea receptor SUR is an ATP binding cassette
(ABC) protein of the ABCC/MRP family. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 257
Score = 37.6 bits (87), Expect = 0.010
Identities = 48/200 (24%), Positives = 83/200 (41%), Gaps = 31/200 (15%)
Query: 146 DIKVENFSISAKGN--DLFVNANLLIANGRRYGLVGPNGHGKTTL----LRHIASRDLK- 198
+IK+ + + + N + + I G++ G+ G G GK++L R + D K
Sbjct: 19 EIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKI 78
Query: 199 VPPNIDILYCEQEVVADDLTAV--ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEI 256
V IDI + L+ + + +L + R L EC + + + + QLK +
Sbjct: 79 VIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNM 138
Query: 257 YEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLL 316
+ L G D A+ +NFS G R LARA + ++L++
Sbjct: 139 VKSLPG-GLD-----------------AVVTEGGENFSVGQRQLFCLARAFVRKSSILIM 180
Query: 317 DEPTNHLDLNAVIWLDNYLQ 336
DE T +D+ +N LQ
Sbjct: 181 DEATASIDMAT----ENILQ 196
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 36.6 bits (85), Expect = 0.011
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 8/48 (16%)
Query: 147 IKVENFSISAKGNDL-FVNANLLIANGRRYGLVGPNGHGKTTLLRHIA 193
I + F ND+ F +L I + GPNG GK+T+L I
Sbjct: 2 IVLGRFPSYFVPNDVTFGEGSLTI-------ITGPNGSGKSTILDAIG 42
Score = 34.3 bits (79), Expect = 0.072
Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 16/127 (12%)
Query: 250 QEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYI 309
Q G A A I L S ++ + + + LA A
Sbjct: 47 GAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKELSA--------LALILALASLK 98
Query: 310 EPTLLLLDEPTNHLDL---NAVIW--LDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQ 364
L +LDE LD A+ L++ ++G +++++H + +++IH+ +
Sbjct: 99 PRPLYILDEIDRGLDPRDGQALAEAILEHLVKG--AQVIVITHLPELAELA-DKLIHIKK 155
Query: 365 QKLYYYK 371
YK
Sbjct: 156 VITGVYK 162
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 37.8 bits (88), Expect = 0.011
Identities = 45/168 (26%), Positives = 69/168 (41%), Gaps = 26/168 (15%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
+ NL + G ++G NG GK+T+ +H+ + L +P E +V D L
Sbjct: 28 DVNLEVKKGEFLVILGRNGSGKSTIAKHMNA--LLIP-------SEGKVYVDGL------ 72
Query: 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA-----IGADSAEPRAR--RIL 276
D E L + F + + + I EE A +G E R R L
Sbjct: 73 ---DTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESL 129
Query: 277 AGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
+G + A SGG + RV++A L + P ++ DEPT LD
Sbjct: 130 KKVGMYE-YRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLD 176
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 38.3 bits (89), Expect = 0.013
Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 20/139 (14%)
Query: 235 AECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAG----------LGFSRA 284
A A F+ QQ L+E++ L + S +L G LG
Sbjct: 411 ANAATWHGKTFAEFQQMSLQELFIFLSQL--PSKSLSIEEVLQGLKSRLSILIDLGLPYL 468
Query: 285 MQDRATKNFSGGWRMRVSLARALYIEPT--LLLLDEPTNHL---DLNAVIWLDNYLQGWK 339
+RA SGG + R +LA+ L E +LDEP+ L D + +I + L+
Sbjct: 469 TPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQG 528
Query: 340 KTLLIVSHDQ---SFLDNV 355
T+L+V HD+ S D +
Sbjct: 529 NTVLLVEHDEQMISLADRI 547
Score = 33.6 bits (77), Expect = 0.33
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 251 EQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYI- 309
E++ E + LK I P I GLG+ Q+ ++ S ++ + +A+ LY+
Sbjct: 1664 EEVAETFPFLKKIQK----PLQALIDNGLGYLPLGQNLSS--LSLSEKIAIKIAKFLYLP 1717
Query: 310 --EPTLLLLDEPTNHLDLN---AVIWLDNYLQGWKKTLLIVSHDQSFL 352
PTL LLDE LD A++ L +++ + HD + L
Sbjct: 1718 PKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPALL 1765
Score = 32.5 bits (74), Expect = 0.67
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 276 LAGLGFSRAMQDRATKNFSGGWRMRVSLARALYI---EPTLLLLDEPTNHL---DLNAVI 329
L LG R + SGG R+ LA L +PTL +LDEPT L D+ A+I
Sbjct: 793 LCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALI 852
Query: 330 WLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHL 362
++ L T++I+ H+ + V + ++ L
Sbjct: 853 YVLQSLTHQGHTVVIIEHNMHVV-KVADYVLEL 884
>gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD. SbcCD
and other Mre11/Rad50 (MR) complexes are implicated in
the metabolism of DNA ends. They cleave ends sealed by
hairpin structures and are thought to play a role in
removing protein bound to DNA termini.
Length = 213
Score = 36.5 bits (85), Expect = 0.017
Identities = 38/190 (20%), Positives = 64/190 (33%), Gaps = 38/190 (20%)
Query: 175 YGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELL 234
+ + GP G GK+T+L I LY + + SV E+
Sbjct: 31 FLICGPTGAGKSTILDAITYA----------LYGKTPRYGRQ-ENLRSVFAPGEDTAEV- 78
Query: 235 AECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFS 294
F+ + + Y ++ G D + +L F R + R S
Sbjct: 79 ---------SFTFQLGGKK---YRVERSRGLDYDQFTRIVLLPQGEFDRFLA-RPVSTLS 125
Query: 295 GGWRMRVSLARAL----YIEPT------LLLLDEPTNHLD---LNAVIWLDNYLQGWKKT 341
GG SL+ AL ++ L +DE LD L AV ++ +
Sbjct: 126 GGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRM 185
Query: 342 LLIVSHDQSF 351
+ ++SH +
Sbjct: 186 VGVISHVEEL 195
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 37.2 bits (87), Expect = 0.023
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 266 DSAEPR-ARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
D+AE + + L A + A SGG + + LA+ L + P +L+LDEPT +D
Sbjct: 378 DAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGID 437
Query: 325 LNA 327
+ A
Sbjct: 438 VGA 440
Score = 29.9 bits (68), Expect = 3.5
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 271 RARRILAGLGFSRAMQDRATK--NFSGGWRMRVSLARALYIEPTLLLLDEPTNHL 323
RA+++LA L + AT N G + V +A+AL + LL+LDEPT L
Sbjct: 123 RAQKLLAQLKLD---INPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASL 174
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 36.6 bits (85), Expect = 0.025
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
SGG + R+ +ARA+ + P ++L+DEP + LD
Sbjct: 165 SGGQQQRLCIARAIAVSPEVILMDEPCSALD 195
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 36.1 bits (83), Expect = 0.035
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
SGG + R+ +ARA+ ++P +LL+DEP + LD
Sbjct: 162 LSGGQQQRLCIARAIAMKPDVLLMDEPCSALD 193
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 36.5 bits (85), Expect = 0.036
Identities = 30/92 (32%), Positives = 40/92 (43%), Gaps = 13/92 (14%)
Query: 267 SAEPRARRIL-----AGLGFSRAMQDRATKNFSGGWRMRVSLARALYIE---PTLLLLDE 318
A P R L GLG+ R Q T SGG R+ LA+ L TL +LDE
Sbjct: 801 EAVPSISRKLQTLCDVGLGYIRLGQPATT--LSGGEAQRIKLAKELSKRSTGRTLYILDE 858
Query: 319 PTNHLDLNAVIWLDNYLQGWKK---TLLIVSH 347
PT L + + L LQ T++++ H
Sbjct: 859 PTTGLHFDDIKKLLEVLQRLVDKGNTVVVIEH 890
Score = 30.0 bits (68), Expect = 3.7
Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 26/109 (23%)
Query: 250 QEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYI 309
+E LKEI E L L +G RA SGG R+ LA +
Sbjct: 459 EEVLKEIRERLG-------------FLIDVGLDYLSLSRAAGTLSGGEAQRIRLATQIGS 505
Query: 310 EPT--LLLLDEPT-------NHLDLNAVIWLDNYLQGWKKTLLIVSHDQ 349
T L +LDEP+ N +N + L + G TL++V HD+
Sbjct: 506 GLTGVLYVLDEPSIGLHQRDNRRLINTLKRLRD--LG--NTLIVVEHDE 550
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 35.8 bits (82), Expect = 0.041
Identities = 47/228 (20%), Positives = 98/228 (42%), Gaps = 31/228 (13%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
N +L + ++G G GK+T++ ++ + I Q +V D
Sbjct: 29 NTSLTFKKNKVTCVIGTTGSGKSTMI--------QLTNGLIISETGQTIVGD------YA 74
Query: 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA-----IGADSAE--PRARRIL 276
+ A++K+ + + K F + + +E E+ A +G + E + +L
Sbjct: 75 IPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELL 134
Query: 277 AGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD-------LNAVI 329
+ R+ SGG + RV+LA + ++ L+LDEPT LD +N
Sbjct: 135 KLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFE 194
Query: 330 WLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377
L+ + +KK +++V+H+ + + +E+I + + K+ + +F
Sbjct: 195 RLN---KEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIF 239
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 35.6 bits (82), Expect = 0.041
Identities = 44/164 (26%), Positives = 64/164 (39%), Gaps = 28/164 (17%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI-----DILYCEQEVVADDLT 218
+L I G L+G NG GKTTLL + I DI + + +
Sbjct: 23 EVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82
Query: 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQ--EQLKEIYEELKAIGADSAEPRARRIL 276
A+ + R + A F+ Q E++K +YE PR
Sbjct: 83 AIVPEGRRVFSRMTVEENLAM--GGFFAERDQFQERIKWVYELF---------PRL---- 127
Query: 277 AGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPT 320
R +Q T SGG + +++ RAL +P LLLLDEP+
Sbjct: 128 ----HERRIQRAGT--MSGGEQQMLAIGRALMSQPRLLLLDEPS 165
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 36.0 bits (83), Expect = 0.046
Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 26/170 (15%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPP----NIDILYCEQEVVADDLTA 219
+L + G GL G NG GK+TL++ ++ V P + +I + + A ++
Sbjct: 19 GIDLEVRPGECVGLCGENGAGKSTLMKILSG----VYPHGTWDGEIYWSGSPLKASNIRD 74
Query: 220 VESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIY--EELKAIGADSAEP----RAR 273
E V + L +L A+ I+ E+ G A RA+
Sbjct: 75 TER--AGIVIIHQELTLVPELSVAE----------NIFLGNEITLPGGRMAYNAMYLRAK 122
Query: 274 RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHL 323
+L L R ++ GG + V +A+AL + LL+LDEP++ L
Sbjct: 123 NLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSL 172
Score = 35.2 bits (81), Expect = 0.097
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 266 DSAEPRA-RRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
+AE + + L A SGG + + LA+ L P +L+LDEPT +D
Sbjct: 376 AAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVD 435
Query: 325 LNA 327
+ A
Sbjct: 436 VGA 438
>gnl|CDD|222104 pfam13401, AAA_22, AAA domain.
Length = 124
Score = 33.8 bits (78), Expect = 0.066
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 32/124 (25%)
Query: 177 LVGPNGHGKTTLLRHIASRDLKVPPNIDILYCE-------QEVVADDLTAVESVLK---- 225
L G +G GKTTLLR +A + PN ++Y E ++++ L A+ L
Sbjct: 9 LTGESGSGKTTLLRRLARQL----PNRRVVYVEAPSLGTPKDLLRKILRALGLPLSGGTT 64
Query: 226 ADVKRT--ELLAECAKL-----EAADFSSEQQEQLKEIYEELKA------IGADSAEPRA 272
A++ + L + EA S E E+L+++Y+ + +G P
Sbjct: 65 AELLEAILDALKRRGRPLLIIDEAQHLSLEALEELRDLYDLSEKGIQVILVG----TPEL 120
Query: 273 RRIL 276
R++L
Sbjct: 121 RKLL 124
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 35.6 bits (82), Expect = 0.074
Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 43/169 (25%)
Query: 177 LVGPNGHGKTTLLRHIASR--------DLKV---PPNIDIL-----YCEQ-EVVADDLTA 219
L+G +G GKTTL+ +A R D+++ P + YCEQ ++ + +T
Sbjct: 911 LMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTV 970
Query: 220 VESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELK-AIGADSAEPRARRILAG 278
ES++ + R L E +K E F E E L E+ + LK AI L G
Sbjct: 971 RESLIYSAFLR--LPKEVSKEEKMMFVDEVME-LVEL-DNLKDAIVG----------LPG 1016
Query: 279 LGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA 327
+ S R R+++A L P+++ +DEPT+ LD A
Sbjct: 1017 V-----------TGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1054
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 35.2 bits (82), Expect = 0.084
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 268 AEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHL 323
A R + + G D + S G + RV + +ALY LL+LDEPT L
Sbjct: 117 ARARIKELSERYGLPVDP-DAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVL 171
Score = 34.4 bits (80), Expect = 0.16
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 290 TKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYL-----QGWKKTLLI 344
++ SGG + ++ LAR L P LL+ +PT LD+ A+ ++ L G K +L+
Sbjct: 401 ARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAG--KAVLL 458
Query: 345 VSHDQSFLDNVCNEI 359
+S D + + + I
Sbjct: 459 ISEDLDEILELSDRI 473
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 35.0 bits (81), Expect = 0.085
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 285 MQDRATK---NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
M+D + SGG + RV++A L ++P +++LDE T+ LD
Sbjct: 130 MEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLD 172
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 34.4 bits (79), Expect = 0.11
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 9/114 (7%)
Query: 291 KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSH 347
K +S G R ++ + + + P +L++DE + D + + +K KT+ VSH
Sbjct: 142 KKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSH 201
Query: 348 DQSFLDNVCNEIIHLDQQKLYYYKG------NYSMFKKMYAQKSKERMKEFEKQ 395
+ + C +I ++ KL Y Y F + +KSK KEF +
Sbjct: 202 NLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKYEAFLNDFKKKSKAEQKEFRNK 255
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 33.8 bits (78), Expect = 0.11
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 298 RMRVSLARALYIEPTLLLLDEPTNHLD 324
R R+++ L +P++L LDEPT+ LD
Sbjct: 114 RKRLTIGVELAAKPSILFLDEPTSGLD 140
Score = 32.2 bits (74), Expect = 0.46
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 18/92 (19%)
Query: 151 NFSISAKGND--LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR--------DLKV- 199
N+++ KG L N + + G L+G +G GKTTLL +A R ++ +
Sbjct: 10 NYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILIN 69
Query: 200 --PPNIDIL----YCEQE-VVADDLTAVESVL 224
P + + Y EQ+ V + +LT E++
Sbjct: 70 GRPLDKNFQRSTGYVEQQDVHSPNLTVREALR 101
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 34.2 bits (79), Expect = 0.12
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 287 DRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA----VIWLDNYLQGWKKTL 342
D+ +N SGG + RV++A L + P +++ DE T+ LD + + + KKTL
Sbjct: 137 DKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTL 196
Query: 343 LIVSHD 348
+ ++HD
Sbjct: 197 ISITHD 202
Score = 29.6 bits (67), Expect = 4.1
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 147 IKVENFSISAKGNDLFV--NANLLIANGRRYGLVGPNGHGKTTL 188
IKVEN S S ++ N + I G ++G NG GK+T+
Sbjct: 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTI 51
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal. This
domain is found to the N-terminus of bacterial signal
peptidases of the S49 family (pfam01343).
Length = 154
Score = 33.3 bits (77), Expect = 0.12
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 382 AQKSKERMKEF------EKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKAD 435
AQK K + E E+ + + L+A KK E K E K EK K +
Sbjct: 32 AQKKKGKKGELEITDLNEEYKDLKESLEAALLDKK--ELKAWE----KAEKKAEKAKAKA 85
Query: 436 EDQGPTELIQKPREYVVKF 454
E + + KPR +V+ F
Sbjct: 86 EKKKAKKEEPKPRLFVLDF 104
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 34.3 bits (78), Expect = 0.13
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Query: 287 DRATKNFSGGWRMRVSLARALY---IEPTLLLLDEPTNHLDLNAVI----WLDNYLQGWK 339
K S G + ++L AL + +LLL+DEP N L + L +
Sbjct: 184 KLLIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEK-G 242
Query: 340 KTLLIVSHDQSFLD 353
L+ +H LD
Sbjct: 243 AQLIFTTHSPLLLD 256
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 34.4 bits (79), Expect = 0.14
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 300 RVSLARALYIEPTLLLLDEPTNHLD--LNAVIW--LDNYLQGWKKTLLIVSHDQSFLDNV 355
+V +A AL +P LL+ DEPTN ++ A I+ L Q T+L++SHD L
Sbjct: 166 KVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQW 225
Query: 356 CNEI 359
++I
Sbjct: 226 ADKI 229
>gnl|CDD|218719 pfam05729, NACHT, NACHT domain. This NTPase domain is found in
apoptosis proteins as well as those involved in MHC
transcription activation. This family is closely related
to pfam00931.
Length = 165
Score = 33.1 bits (76), Expect = 0.17
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 177 LVGPNGHGKTTLLRHIAS 194
L G G GKTTLL+ IA
Sbjct: 5 LQGEAGSGKTTLLQKIAL 22
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 34.3 bits (79), Expect = 0.17
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA---VIWLDNYLQGWKKTLLIVSHDQS 350
SGG + +V + R L +P +L+LDEPT +D+ A + L L K ++I+S +
Sbjct: 393 SGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP 452
Query: 351 FLDNVCNEII 360
L + + I+
Sbjct: 453 ELLGITDRIL 462
Score = 28.5 bits (64), Expect = 9.7
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 150 ENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLR 190
N S S G N NL + + L+G NG GK+TLL+
Sbjct: 2 SNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLK 42
>gnl|CDD|237802 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 767
Score = 34.0 bits (78), Expect = 0.21
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASR 195
+ + L+A G LVGP G GKTT +A+R
Sbjct: 177 DEDALLAQGGVLALVGPTGVGKTTTTAKLAAR 208
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 33.6 bits (77), Expect = 0.22
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 267 SAEPRARRILAGLGFSRAMQDRAT---KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHL 323
E R ++I+ L + D A+ + G + R+ LARAL + P +++ DE L
Sbjct: 121 EPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASL 180
Query: 324 DL 325
D+
Sbjct: 181 DM 182
>gnl|CDD|213210 cd03243, ABC_MutS_homologs, ATP-binding cassette domain of MutS
homologs. The MutS protein initiates DNA mismatch
repair by recognizing mispaired and unpaired bases
embedded in duplex DNA and activating endo- and
exonucleases to remove the mismatch. Members of the MutS
family also possess a conserved ATPase activity that
belongs to the ATP binding cassette (ABC) superfamily.
MutS homologs (MSH) have been identified in most
prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 202
Score = 33.0 bits (76), Expect = 0.24
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 152 FSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA 193
++ + FV ++ + +GR + GPN GK+T LR I
Sbjct: 9 VLLALTKGETFVPNDINLGSGRLLLITGPNMGGKSTYLRSIG 50
>gnl|CDD|223666 COG0593, DnaA, ATPase involved in DNA replication initiation [DNA
replication, recombination, and repair].
Length = 408
Score = 33.4 bits (77), Expect = 0.27
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 150 ENFSISAKGNDLFVNANLLIAN--GRRYG---LVGPNGHGKTTLLRHIASRDLKVPPNID 204
+NF + N L A +A G Y + G G GKT LL+ I + L PN
Sbjct: 87 DNFVVG-PSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNAR 145
Query: 205 ILY 207
++Y
Sbjct: 146 VVY 148
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 33.6 bits (77), Expect = 0.27
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA---VIWLDNYLQGWKKTLLIVSHDQS 350
SGG + +V +++ L P +++ DEPT +D+ A + + L K +L+VS +
Sbjct: 411 SGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP 470
Query: 351 FLDNVCNEII 360
+ VC+ I
Sbjct: 471 EIITVCDRIA 480
>gnl|CDD|235570 PRK05703, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 424
Score = 33.3 bits (77), Expect = 0.32
Identities = 40/200 (20%), Positives = 72/200 (36%), Gaps = 18/200 (9%)
Query: 8 IEEDKKQEIKPVK-EEKISKKSKKKEKKDLLDEILSAPSKETPKVDDIPVPASDEVPNKE 66
++ED+ + PV EEK + LL++ S + + + + ++
Sbjct: 51 VDEDETPKKNPVLREEKRKPAKSILSLQALLEKRPSRTNSQDALLQAENALPEWKKELEK 110
Query: 67 EVEPEVAAPPQVKEDTKASKDKKLTHKEKKKMKKDMEFQKQVETITKKGGQGHSELGDNF 126
EP+ P E K+ E K++K +E Q ++ +EL
Sbjct: 111 PSEPKEEEPKAAAESKVVQKELDELRDELKELKNLLEDQLSGLRQVERIPPEFAEL---- 166
Query: 127 TISQMEKTG------GQLAAL-----ENAVDIKVENFSISAKGNDLFVNANLLIANGRRY 175
+++++G +L L N + V ++ G
Sbjct: 167 -YKRLKRSGLSPEIAEKLLKLLLEHMPPRERTAWRYLLELLA-NMIPVRVEDILKQGGVV 224
Query: 176 GLVGPNGHGKTTLLRHIASR 195
LVGP G GKTT L +A+R
Sbjct: 225 ALVGPTGVGKTTTLAKLAAR 244
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional.
Length = 330
Score = 33.3 bits (77), Expect = 0.33
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 393 EKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVV 452
E+ ++ +ELKA KK+ + K +K+EK ++K KA KPR +V+
Sbjct: 47 EQYKEMKEELKAALLDKKELKAWHKA--QKKKEKQEAKAAKAK---------SKPRLFVL 95
Query: 453 KF 454
F
Sbjct: 96 DF 97
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 154
Score = 32.2 bits (73), Expect = 0.34
Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
Query: 177 LVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADV-KRTELLA 235
L GP+G GKT+LLR + L D A+ +L+ + + L
Sbjct: 29 LTGPSGTGKTSLLRELLEGLLVAAGKCDQAER--NPPYAFSQALRELLRQLLRELAAELL 86
Query: 236 ECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRIL 276
+ A +E E L+++ E L+ + RAR ++
Sbjct: 87 LLREALLAALGAELIEGLQDLVELLERL-----LARARPLV 122
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 33.3 bits (77), Expect = 0.34
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 268 AEPRARRILA-----GLGFSRAMQDRATKNFSGGWRMRVSLARALY---IEPTLLLLDEP 319
A P+ R L GLG+ + Q T SGG RV LA+ L TL +LDEP
Sbjct: 795 AIPKIARKLQTLVDVGLGYIKLGQPATT--LSGGEAQRVKLAKELSKRSTGKTLYILDEP 852
Query: 320 TNHL---DLNAVIWLDNYLQGWKKTLLIVSH 347
T L D+ ++ + + L T++++ H
Sbjct: 853 TTGLHFDDIKKLLEVLHRLVDKGNTVIVIEH 883
Score = 32.2 bits (74), Expect = 0.82
Identities = 36/130 (27%), Positives = 52/130 (40%), Gaps = 25/130 (19%)
Query: 238 AKLEAADFSSEQQEQLKEIYEELKAIGAD--SAEPRARRILAGLGFSRAMQD-------- 287
A A+ S E +E LK + AEP + I LGF + D
Sbjct: 419 AGKNIAEISEMSIADALEFFENLKLSEKEKKIAEPILKEIKERLGF---LVDVGLGYLTL 475
Query: 288 -RATKNFSGGWRMRVSLARALYIEPT--LLLLDEPTNHL---DLNAVIWLDNYLQGWKK- 340
R+ SGG R+ LA + T L +LDEP+ L D +I L+ +
Sbjct: 476 SRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLI---ETLKRLRDL 532
Query: 341 --TLLIVSHD 348
T+++V HD
Sbjct: 533 GNTVIVVEHD 542
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 33.6 bits (76), Expect = 0.36
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 9 EEDKKQEIKPVKEEKISKKSKKKEKKDLLDEILSAPSKETPKVDDIPVPASDEVPNKEEV 68
E+ K E K +E+K + ++KKK ++ + ++E K D ++E E
Sbjct: 1288 EKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEA 1347
Query: 69 ---EPEVAAPPQVKEDTKASKDKKLTHKEKKK---MKKDMEFQKQVETITKK 114
E E AA + KA +K + KKK KK E +K+ + KK
Sbjct: 1348 AKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKK 1399
Score = 33.2 bits (75), Expect = 0.41
Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 9/123 (7%)
Query: 1 KEDAPTHIEEDKKQEIKPVKEEKISKKSKKKEKKDLLDEILSAPSKETPKVDDIPVPASD 60
K E + + EEK KKKE+ + ++E K D+ A +
Sbjct: 1343 KAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEE 1402
Query: 61 EVPNKEEVEPEVAAPPQVKEDTKASKDKKLTHKEKKK---------MKKDMEFQKQVETI 111
+ +E++ AA + E K +++KK + KKK KK E K+ E
Sbjct: 1403 DKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEA 1462
Query: 112 TKK 114
KK
Sbjct: 1463 KKK 1465
Score = 33.2 bits (75), Expect = 0.45
Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 9 EEDKKQEIKPVKEEKISKKSKKKEKKDLLDEILSAPSKETPKVDDIPVPASDEVPNKEEV 68
EED+K+ + +K+E K ++ KK +E A +E K ++ ++E + E
Sbjct: 1684 EEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKA--EELKKAEEENKIKAEEAKKEAEE 1741
Query: 69 EPEVAAPPQVKEDTKASKDKKLTHKEKKKMKKDMEFQKQVETITKKG 115
+ + A + E+ K KK+ H +K++ KK E +K+ E + ++
Sbjct: 1742 DKKKAEEAKKDEEEK----KKIAHLKKEEEKKAEEIRKEKEAVIEEE 1784
Score = 32.0 bits (72), Expect = 1.0
Identities = 14/71 (19%), Positives = 34/71 (47%)
Query: 383 QKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTE 442
+K++E K+ + +K+ +E K ++ K + + +EK ++ +K +E + +
Sbjct: 1322 KKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKAD 1381
Query: 443 LIQKPREYVVK 453
+K E K
Sbjct: 1382 AAKKKAEEKKK 1392
Score = 30.9 bits (69), Expect = 2.2
Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 5/108 (4%)
Query: 9 EEDKKQEIKPVKEEKISKKSKKKEKKDLLDEILSAPSKETPKVDDIPVPASDEVPNKEEV 68
E K E + E + +++ E+K E + K D A ++ E
Sbjct: 1340 EAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKK--EEAKKKADAAKKKAEEKKKADEAK 1397
Query: 69 EPEVAAPPQVKEDTKASKDKKLTHKEKKK---MKKDMEFQKQVETITK 113
+ + E KA+ KK + KKK KK E +K+ E K
Sbjct: 1398 KKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKK 1445
Score = 30.5 bits (68), Expect = 2.9
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 11/117 (9%)
Query: 9 EEDKKQEIKPVKEEKISKKSKKKEKKDLLDEILSAPSKETPKVDDIPVPASDEVPNKEEV 68
EE KK E K E+ K + ++K E L ++E K +++ ++E EE+
Sbjct: 1665 EEAKKAEEDKKKAEEAKKAEEDEKKAA---EALKKEAEEAKKAEELKKKEAEEKKKAEEL 1721
Query: 69 EPEVAAPPQVKEDTKASKDKKLTHKEKKK---MKKDMEFQKQVETITKKGGQGHSEL 122
+ + + KA + KK ++KKK KKD E +K++ + K+ + E+
Sbjct: 1722 KKA-----EEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEI 1773
Score = 30.5 bits (68), Expect = 3.5
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 382 AQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTK-EVLTRKQEKNKSK---LQKADED 437
A+K E K+ E+ +K+ +E K ++KK+AE+ K + +K E+ K K +KA E
Sbjct: 1449 AKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEA 1508
Query: 438 QGPTELIQKPRE 449
+ + +K E
Sbjct: 1509 KKKADEAKKAEE 1520
Score = 30.1 bits (67), Expect = 3.6
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 378 KKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADED 437
K A+K + K+ +++K+ E K + K+A++ K+ K+ + K KA+E
Sbjct: 1412 KAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKK--KAEEA 1469
Query: 438 QGPTELIQKPRE 449
+ E +K E
Sbjct: 1470 KKADEAKKKAEE 1481
Score = 30.1 bits (67), Expect = 4.5
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 378 KKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQE--KNKSKLQKAD 435
KK + K + E E +A + + AEKK +E + K + +KAD
Sbjct: 1335 KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAD 1394
Query: 436 EDQGPTELIQKPREYVVK 453
E + E +K + + K
Sbjct: 1395 EAKKKAEEDKKKADELKK 1412
Score = 29.7 bits (66), Expect = 5.8
Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Query: 382 AQKSKERMKEFEKQEKRIKELKAHGQ--------SKKQAEKKTKEVLTRKQEKNKSKLQK 433
A+K+ E K+ E+ +K+ K + +K +AE E +++ ++ +K
Sbjct: 1314 AKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKK 1373
Query: 434 ADEDQGPTELIQKPRE 449
+ + +K E
Sbjct: 1374 EEAKKKADAAKKKAEE 1389
Score = 29.3 bits (65), Expect = 6.6
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 382 AQKSKERMKEFEKQEKRIKELKAHGQSKKQA-------EKKTKEVLTRKQEKNKSKLQKA 434
A+K+ E K+ E+ +K+ E K ++KK+A E K + + +E K+ K
Sbjct: 1482 AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKK 1541
Query: 435 DEDQGPTELIQKPRE 449
E++ + ++K E
Sbjct: 1542 AEEKKKADELKKAEE 1556
Score = 29.3 bits (65), Expect = 7.4
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 1 KEDAPTHIEEDKKQEIKPVKEEKISKKSKKKEKKDLLDEILSAPSK---ETPKVDDIPVP 57
+E+ EE KK E +K E++ K ++K+K + L + + K E K ++
Sbjct: 1602 EEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKI 1661
Query: 58 ASDEVPNKEEVEPEVAAPPQVKEDTKASKDKKLTHKEKKKMKKDMEFQKQVETITKKGGQ 117
+ E K E + + A + E+ + + L + ++ KK E +K+ KK +
Sbjct: 1662 KAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEA-KKAEELKKKEAEEKKKAEE 1720
Score = 29.3 bits (65), Expect = 7.7
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 383 QKSKERMKEFE--KQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQK-ADEDQG 439
+K E K+ E K+ + ++KA K+ E K K +K E+ K K+ E++
Sbjct: 1709 KKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEK 1768
Query: 440 PTELIQKPREYVVK 453
E I+K +E V++
Sbjct: 1769 KAEEIRKEKEAVIE 1782
Score = 29.3 bits (65), Expect = 7.9
Identities = 28/129 (21%), Positives = 52/129 (40%), Gaps = 11/129 (8%)
Query: 8 IEEDKKQEIKPVKEEKISKKS---KKKEKKDLLDEILSAPSKETPKVDDIPVPASDEVPN 64
EE + +E+ + EE+ K+ KK E+ + E L +E KV+ + ++E
Sbjct: 1589 AEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKK 1648
Query: 65 KEEVEPEVAAPPQVKEDTKASKDKKLTHKEKKKMKKDMEFQKQVETITKKGGQGHSELGD 124
EE++ E+ K + K ++ KK E +K E K E +
Sbjct: 1649 AEELKKA--------EEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEE 1700
Query: 125 NFTISQMEK 133
+++K
Sbjct: 1701 AKKAEELKK 1709
Score = 29.0 bits (64), Expect = 8.2
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 378 KKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAE---KKTKEVLTRKQEKNKSK--LQ 432
+ +K +E K+ + +K+ +E K ++KK+AE KK E+ K K+ +
Sbjct: 1366 AEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKK 1425
Query: 433 KADEDQGPTELIQKPRE 449
KA+E + E +K E
Sbjct: 1426 KAEEKKKADEAKKKAEE 1442
Score = 29.0 bits (64), Expect = 8.7
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 382 AQKSKERMKEFEKQEKRIKELKAHGQS-KKQAE--KKTKEVLTRKQEKNKSKLQKADEDQ 438
A+K E K+ ++ +K+ +E K + KK+AE KK E + E + + A+E
Sbjct: 1307 AKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKA 1366
Query: 439 GPTEL 443
E
Sbjct: 1367 EAAEK 1371
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 33.1 bits (75), Expect = 0.39
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 9/111 (8%)
Query: 1 KEDAPTHIEEDKKQEIKPVKE-EKISKKSKKKEK---KDLLDEILSAPSKETPKVDDIPV 56
K D P ++ KK + K KE EK K KKKE K LL + +P+ +
Sbjct: 189 KGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLLLALDDSPASAASVAEADEA 248
Query: 57 PASDEVPNKEEVEPEVAAPPQVKEDTKASKDKKLTHKEKKKMKKDMEFQKQ 107
++ V P +D +A + KK +KKK +K+ E +K+
Sbjct: 249 SLANTVSGTAPDSE-----PDEPKDAEAEETKKSPKHKKKKQRKEKEEKKK 294
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 32.9 bits (75), Expect = 0.44
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 300 RVSLARALYIEPTLLLLDEPTNHLD--LNAVIW--LDNYLQGWKKTLLIVSHDQSFLDNV 355
+V +A AL +P LL+ DEPTN ++ A I+ L Q T+L++SHD +
Sbjct: 166 KVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQW 225
Query: 356 CNEI 359
++I
Sbjct: 226 ADKI 229
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 32.2 bits (74), Expect = 0.53
Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 18/106 (16%)
Query: 270 PRARRIL-----AGLGFSRAMQDRATKNFSGGWRMRVSLARALYIE---PTLLLLDEPTN 321
P+ R L GLG+ + Q T SGG R+ LA+ L TL +LDEPT
Sbjct: 144 PKIARKLQTLCDVGLGYIKLGQPATT--LSGGEAQRIKLAKELSKRSTGKTLYILDEPTT 201
Query: 322 HLDLNAVIWLDNYLQGWKK---TLLIVSHDQSFLD--NVCNEIIHL 362
L + V L LQ T++++ H+ LD + II L
Sbjct: 202 GLHFHDVKKLLEVLQRLVDKGNTVVVIEHN---LDVIKCADWIIDL 244
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 32.1 bits (74), Expect = 0.55
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 8/46 (17%)
Query: 148 KVENFSISAKG----NDLFVNANLLIANGRRYGLVGPNGHGKTTLL 189
+E S+S G NDL +L + G ++GPNG GKTT++
Sbjct: 4 YLEGLSVSFDGFKALNDL----SLYVDPGELRVIIGPNGAGKTTMM 45
>gnl|CDD|220129 pfam09159, Ydc2-catalyt, Mitochondrial resolvase Ydc2 / RNA
splicing MRS1. Members of this family adopt a secondary
structure consisting of two beta sheets and one alpha
helix, arranged as a beta-alpha-beta motif. Each beta
sheet has five strands, arranged in a 32145 order, with
the second strand being antiparallel to the rest.
Mitochondrial resolvase Ydc2 is capable of resolving
Holliday junctions and cleaves DNA after 5'-CT-3' and
5'-TT-3' sequences. This family also contains the
mitochondrial RNA-splicing protein MRS1 which is
involved in the excision of group I introns.
Length = 254
Score = 32.0 bits (73), Expect = 0.66
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 11/87 (12%)
Query: 15 EIKPVKEEKISKKSKKKEKKDLLDEILSAPSKETPKVDDIPVPASDEVPNKEEVEPEVAA 74
E K + +K S K+ KK + DL+ E LS P + ++ A
Sbjct: 154 EKKKPRSKKKSSKNSKKLRIDLVGEWLSTAISPPD-----------SSPVSLDAREKLRA 202
Query: 75 PPQVKEDTKASKDKKLTHKEKKKMKKD 101
E +K +K+ K+
Sbjct: 203 YLPKWEGKTKNKKSLKEYKDLIKLLDS 229
>gnl|CDD|216420 pfam01298, Lipoprotein_5, Transferrin binding protein-like solute
binding protein. This family of proteins are distantly
related to other families of solute binding proteins.
Length = 554
Score = 32.1 bits (73), Expect = 0.79
Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 7/96 (7%)
Query: 42 SAPSKETPKVDDIPVPASDEVPNKEEVEPEVAAPPQVKEDTKASKDKKLTHKEKKKMKKD 101
SAP E PK D+P P K E+ A P + K + ++ + +KD
Sbjct: 11 SAPKAEAPKYQDVPSAK----PEKAELAKLDA--PALGFAMKLPRRNWGPEEKTELSEKD 64
Query: 102 MEFQKQVETITKKGGQGHSELGDNFTISQMEKTGGQ 137
+ I + + + E + ++ E
Sbjct: 65 WIKTSSLSKIENEVEKNNGEDETH-DKNRKEGAHDF 99
>gnl|CDD|216186 pfam00910, RNA_helicase, RNA helicase. This family includes RNA
helicases thought to be involved in duplex unwinding
during viral RNA replication. Members of this family are
found in a variety of single stranded RNA viruses.
Length = 105
Score = 30.3 bits (69), Expect = 0.81
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 15/61 (24%)
Query: 177 LVGPNGHGKTTLLRHIASRDLKV------------PPNIDIL--YCEQEVVA-DDLTAVE 221
L GP G GK+TL +++A LK P+ D Y Q VV DD
Sbjct: 3 LYGPPGCGKSTLAKYLARALLKHLGLPKKDSVYSRNPDDDFWDGYTGQPVVIIDDFGQNP 62
Query: 222 S 222
Sbjct: 63 D 63
>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 226
Score = 31.5 bits (72), Expect = 0.86
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 287 DRATKNFSGGWRMRVSLARALYIEPT--LLLLDEPTNHL---DLNAVIWLDNYLQGWKKT 341
R+ SGG R+ LA + T L +LDEP+ L D + +I L+ T
Sbjct: 132 SRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNT 191
Query: 342 LLIVSHDQ 349
+L+V HD+
Sbjct: 192 VLVVEHDE 199
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 32.1 bits (73), Expect = 0.90
Identities = 50/226 (22%), Positives = 83/226 (36%), Gaps = 27/226 (11%)
Query: 147 IKVENFSISAKGNDLFVN-ANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDI 205
+++ N + + N V NL I G L+G NG GK+TL + L P + +I
Sbjct: 323 LELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTG--LYQPQSGEI 380
Query: 206 LYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA 265
L + V A+ L + A L + E + QL E + + + A
Sbjct: 381 LLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEG-----KASPQLIEKWLQRLEL-A 434
Query: 266 DSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL 325
R S G + R++L AL E +L+LDE D
Sbjct: 435 HKTSLNDGRFS-------------NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDP 481
Query: 326 NAVIW----LDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
L L+ KT+ +SHD + + + ++ + +L
Sbjct: 482 AFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHA-DRLLEMRNGQL 526
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 31.4 bits (71), Expect = 0.97
Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYL-QGWKKTLLIVSHD--QS 350
S G + + LAR++ + +LLLDEP+ HLD + L Q + +I+S ++
Sbjct: 140 SHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEA 199
Query: 351 FLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKK 410
L+ C + +++ K+ Y +K+ +KS K+ R+K SK
Sbjct: 200 MLE--CQRFLVIEENKVR----QYDSIQKLLNEKS--HFKQAISPSDRLKLFPRRNSSKS 251
Query: 411 QAEKKTKEVLTRKQEKNKSKLQ 432
+ +K + + QE+ + ++Q
Sbjct: 252 K--RKPRPQIQALQEETEEEVQ 271
Score = 29.8 bits (67), Expect = 3.2
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 158 GNDLFVNANLLIANGRRYGLVGPNGHGKTTLL 189
GN + N + I+ G+R GL+G G GK+TLL
Sbjct: 16 GNAVLENISFSISPGQRVGLLGRTGSGKSTLL 47
>gnl|CDD|217066 pfam02492, cobW, CobW/HypB/UreG, nucleotide-binding domain. This
domain is found in HypB, a hydrogenase expression /
formation protein, and UreG a urease accessory protein.
Both these proteins contain a P-loop nucleotide binding
motif. HypB has GTPase activity and is a guanine
nucleotide binding protein. It is not known whether UreG
binds GTP or some other nucleotide. Both enzymes are
involved in nickel binding. HypB can store nickel and is
required for nickel dependent hydrogenase expression.
UreG is required for functional incorporation of the
urease nickel metallocenter. GTP hydrolysis may required
by these proteins for nickel incorporation into other
nickel proteins. This family of domains also contains
P47K, a Pseudomonas chlororaphis protein needed for
nitrile hydratase expression, and the cobW gene product,
which may be involved in cobalamin biosynthesis in
Pseudomonas denitrificans.
Length = 178
Score = 31.1 bits (71), Expect = 1.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 174 RYGLVGPNGHGKTTLLRHIASRD 196
L G G GKTTLL H+ ++
Sbjct: 2 VTVLTGFLGSGKTTLLEHLLEKN 24
>gnl|CDD|224337 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and
secretion].
Length = 407
Score = 31.5 bits (72), Expect = 1.0
Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 8/175 (4%)
Query: 21 EEKISKKSKKKEKKDLLDEILSAPSKETPKVDDIPVPASDEVPNKEEVEPEVAAPPQVKE 80
E + + + + KD ++L P E + + E +E + E
Sbjct: 60 ELRKFQTREAAKVKDAEAQLLKDP-AEKKREERKAA-KKIERSTPSLIERKTQEVKDSGE 117
Query: 81 DTKASKDKKLTHKEKKKMKKDMEFQKQVETITKKGGQGHSELGDNFTISQMEKTGGQLAA 140
+ + EK +++ E + + K+ Q + L + + ++
Sbjct: 118 EIAE-----MMRDEKVPIRELEEIPPEFVALYKQEIQSPTRLNLINELLRAG-LELEILD 171
Query: 141 LENAVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR 195
+++ + FS + L + NL++ R LVGP G GKTT L +A+R
Sbjct: 172 MKDESYEDLRYFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAAR 226
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 31.6 bits (72), Expect = 1.1
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 378 KKMYAQKSKE-RMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADE 436
+K AQ++KE R KE E++ K K+LK K + KE+ +K K++ +K ++
Sbjct: 277 RKTKAQRNKEKRRKELEREAKEEKQLK----KKLAQLARLKEIAKEVAQKEKARARKKEQ 332
Query: 437 DQGPTELIQKPREYVVKFSFPDPP 460
+ E + R + K +P+PP
Sbjct: 333 RKERGEKKKLKRRKLGKHKYPEPP 356
Score = 29.7 bits (67), Expect = 4.0
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 10 EDKKQEIKPVKEEKISKKSKKKEKKDLLDEILSAPSK--ETPKVDDIPVPASDEVPNKEE 67
E K+QE++ V+E+K+ K + + + D + E L S + DD E
Sbjct: 210 EKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEESDD-----ESAWEGFES 264
Query: 68 VEPEVAAPPQVKEDTKASKDKKLTHKEKKKMKKDMEFQKQ 107
+ P + K TKA ++K+ KE ++ K+ + K+
Sbjct: 265 EYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKK 304
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 31.8 bits (73), Expect = 1.1
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 287 DRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA 327
++ N SGG + + L R L + ++LLDEPT +D+ A
Sbjct: 391 EQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGA 431
Score = 29.1 bits (66), Expect = 7.0
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 172 GRRYGLVGPNGHGKTTLLR 190
G+ + L+G NG GK+TLL+
Sbjct: 30 GQVHALMGENGAGKSTLLK 48
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons, ATPase
subunits of proteases, helicases, or nucleic-acid
stimulated ATPases. The AAA+ proteins contain several
distinct features in addition to the conserved
alpha-beta-alpha core domain structure and the Walker A
and B motifs of the P-loop NTPases.
Length = 151
Score = 30.6 bits (69), Expect = 1.1
Identities = 31/94 (32%), Positives = 36/94 (38%), Gaps = 16/94 (17%)
Query: 177 LVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKAD----VKRTE 232
L GP G GKTTL R IA + P LY + A DL V + V+
Sbjct: 24 LYGPPGTGKTTLARAIA--NELFRPGAPFLY----LNASDLLEGLVVAELFGHFLVRLLF 77
Query: 233 LLAECAKL------EAADFSSEQQEQLKEIYEEL 260
LAE AK E S Q L + E L
Sbjct: 78 ELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETL 111
>gnl|CDD|217787 pfam03910, Adeno_PV, Adenovirus minor core protein PV.
Length = 336
Score = 31.3 bits (71), Expect = 1.1
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 65 KEE----VEPEVAAPPQVKEDTKASKDKKLTHKEKKKMKKDME 103
KEE + PE+ P VK++ K K K++ ++K++ K +++
Sbjct: 7 KEEMLQILAPEIYGPRPVKDEAKPRKIKRVKKRKKREEKDELD 49
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 31.4 bits (71), Expect = 1.2
Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 6/100 (6%)
Query: 1 KEDAPTHIEEDKKQEIKPVKEEKISKKSKKKEKKDLLDEILSAPSKETPKVDDIPVPASD 60
+++ EE KK++ KP +E K K ++ ++K E K+ + P
Sbjct: 107 EKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEE------PRDR 160
Query: 61 EVPNKEEVEPEVAAPPQVKEDTKASKDKKLTHKEKKKMKK 100
E K E + P + + +K K+ +EK++
Sbjct: 161 EEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAA 200
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 31.2 bits (70), Expect = 1.3
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 285 MQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
+ R SGG + RV++A + + P +++LDE T+ LD
Sbjct: 133 FKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLD 172
>gnl|CDD|211358 cd08352, Glo_EDI_BRP_like_1, This conserved domain belongs to a
superfamily including the bleomycin resistance protein,
glyoxalase I, and type I ring-cleaving dioxygenases.
This protein family belongs to a conserved domain
superfamily that is found in a variety of structurally
related metalloproteins, including the bleomycin
resistance protein, glyoxalase I, and type I
ring-cleaving dioxygenases. A bound metal ion is
required for protein activities for the members of this
superfamily. A variety of metal ions have been found in
the catalytic centers of these proteins including
Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein
superfamily contains members with or without domain
swapping. The proteins of this family share three
conserved metal binding amino acids with the type I
extradiol dioxygenases, which shows no domain swapping.
Length = 125
Score = 30.0 bits (68), Expect = 1.4
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 11/78 (14%)
Query: 447 PREYVVK-FSFPDPP--PLQPPILGLHNVTFAYEGMKPLLMSKAD-EDQG-PTELIQKPR 501
EY ++ FSFP+PP P P GL ++ FA E ++ + A+ + G E I+
Sbjct: 48 NGEYQIELFSFPNPPPRPSYPEACGLRHLAFAVEDIEA---AVAELKAHGVEVEPIRVDE 104
Query: 502 EYVVKFSF---PDPPPLQ 516
+F+F PD PL+
Sbjct: 105 FTGKRFTFFYDPDGLPLE 122
Score = 29.6 bits (67), Expect = 1.7
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 500 PREYVVK-FSFPDPP--PLQPPILGLHNVTFAYE 530
EY ++ FSFP+PP P P GL ++ FA E
Sbjct: 48 NGEYQIELFSFPNPPPRPSYPEACGLRHLAFAVE 81
>gnl|CDD|150430 pfam09755, DUF2046, Uncharacterized conserved protein H4 (DUF2046).
This is the conserved N-terminal 350 residues of a
family of proteins of unknown function possibly
containing a coiled-coil domain.
Length = 308
Score = 31.1 bits (70), Expect = 1.4
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 387 ERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADE 436
E+M+++ K+E++ +E Q K E + +E L R+ +++S L+ DE
Sbjct: 252 EKMEQYAKEERQTREENIRLQRKLLREVERREALCRQLSESESSLEMDDE 301
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 31.4 bits (71), Expect = 1.4
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 383 QKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTE 442
+K K+ K EK+ K++K + ++K QA++ + K+ + KS+ ++ ED+ P +
Sbjct: 20 RKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSR-KRDVEDENPED 78
Query: 443 LIQKP 447
I
Sbjct: 79 FIDPD 83
>gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1. All
proteins in this family for which functions are known
are cyclin dependent protein kinases that are components
of TFIIH, a complex that is involved in nucleotide
excision repair and transcription initiation. Also known
as MAT1 (menage a trois 1). This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 309
Score = 30.9 bits (70), Expect = 1.5
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 7 HIEEDKKQEIKPVKEEKISKKSKKKEKKDLLDEILSAPSKETPKVDDIPVPASDEVPNKE 66
EE ++ ++ KEE+ + +K+K K+ LLDE+ ++ + N
Sbjct: 156 EEEEQRRLLLQ--KEEEEQQMNKRKNKQALLDELETSTL-------PAAELIAQHKKNSV 206
Query: 67 EVEPEVAAPPQVKEDT 82
++E +V P K +T
Sbjct: 207 KLEMQVEKPKPEKPNT 222
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 31.3 bits (71), Expect = 1.6
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 11/77 (14%)
Query: 288 RATKNFSGGWRMRVSLARAL--------YIEPTLLLLDEPTNHLD---LNAVIWLDNYLQ 336
R K SGG R SLA L LL LDEP LD L + + L
Sbjct: 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELL 870
Query: 337 GWKKTLLIVSHDQSFLD 353
+ ++I+SH + +
Sbjct: 871 SDGRQIIIISHVEELKE 887
>gnl|CDD|184048 PRK13428, PRK13428, F0F1 ATP synthase subunit delta; Provisional.
Length = 445
Score = 31.2 bits (71), Expect = 1.7
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 199 VPPNIDILYCEQEVV----ADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLK 254
VPP ++ Q+ V A+ TA + + +AD T+ + + AK EAA E +E +
Sbjct: 23 VPPVRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVED-AKAEAARVVEEAREDAE 81
Query: 255 EIYEELKAIGADSAEPRARRI 275
I E+L+A A+ A RI
Sbjct: 82 RIAEQLRA----QADAEAERI 98
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 30.9 bits (71), Expect = 1.7
Identities = 14/54 (25%), Positives = 33/54 (61%)
Query: 383 QKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADE 436
++ +ER E +K EKR+ + + + K + +K +E L +K+++ + K Q+ ++
Sbjct: 75 KELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEK 128
>gnl|CDD|234608 PRK00064, recF, recombination protein F; Reviewed.
Length = 361
Score = 30.9 bits (71), Expect = 1.9
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 177 LVGPNGHGKTTLL 189
LVG NG GKT LL
Sbjct: 28 LVGENGQGKTNLL 40
>gnl|CDD|238540 cd01120, RecA-like_NTPases, RecA-like NTPases. This family includes
the NTP binding domain of F1 and V1 H+ATPases, DnaB and
related helicases as well as bacterial RecA and related
eukaryotic and archaeal recombinases. This group also
includes bacterial conjugation proteins and related DNA
transfer proteins involved in type II and type IV
secretion.
Length = 165
Score = 30.2 bits (68), Expect = 1.9
Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 7/123 (5%)
Query: 176 GLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLA 235
+ GP G GKTTL +A + + E+E+ + LK + ++
Sbjct: 3 LVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVF 62
Query: 236 ECAKLEAADFSSEQQEQLKE-------IYEELKAIGADSAEPRARRILAGLGFSRAMQDR 288
A AA + E+L+E I +EL + E R R + +R
Sbjct: 63 ATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLER 122
Query: 289 ATK 291
A K
Sbjct: 123 ARK 125
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 30.8 bits (70), Expect = 2.3
Identities = 27/108 (25%), Positives = 58/108 (53%), Gaps = 5/108 (4%)
Query: 1 KEDAPTHIEEDKKQEIKPVKEEKISKKSKKKEKKDLLDEILSAPSKETPKVDDIPVPASD 60
K D P+ + D K+E++ KEEK + K +K+ +K L + KE K++ +P ++
Sbjct: 538 KPDGPSVWKLDDKEELQREKEEKEALKEQKRLRK--LKKQEEKKKKELEKLEKAKIPPAE 595
Query: 61 EVPNKEEVEPEVAAPPQVKEDTKASKDKKLTHKEKKKMKKDMEFQKQV 108
+E+ + +A + T + ++++ KE+KK+ K+ + Q ++
Sbjct: 596 FFKRQED---KYSAFDETGLPTHDADGEEISKKERKKLSKEYDKQAKL 640
>gnl|CDD|215651 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family,
nucleotide-binding domain. This family includes the ATP
synthase alpha and beta subunits, the ATP synthase
associated with flagella and the termination factor Rho.
Length = 213
Score = 30.1 bits (69), Expect = 2.3
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 169 IANGRRYGLVGPNGHGKTTLLRHIA 193
I G+R G+ G +G GKT LL IA
Sbjct: 12 IGKGQRIGIFGGSGTGKTVLLGMIA 36
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 30.6 bits (69), Expect = 2.4
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 25 SKKSKKKEKKDLLDEILSAP---SKETPKVDDIPVPASDEVPNKEEVEPEVAAPPQVKED 81
KK K++K+ + +E+ K D I S E +E E E P +
Sbjct: 222 FKKKTKEKKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERS 281
Query: 82 TKASKDKKLTHKEKKKMKKDME 103
+ ++ +++K++KK ME
Sbjct: 282 DSEEETEEKEKEKRKRLKKMME 303
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 30.7 bits (70), Expect = 2.5
Identities = 9/67 (13%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 377 FKKMYAQKSKERMKEFEKQEKRIKE--LKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKA 434
KK+ + K+R +E ++++K+ K + +++ +K+ ++ ++ + + + ++
Sbjct: 412 IKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEE 471
Query: 435 DEDQGPT 441
+ + T
Sbjct: 472 KKKKQAT 478
Score = 29.9 bits (68), Expect = 3.6
Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
Query: 6 THIEEDKKQEIKPVKEEKISKKSKKKEKKDLLDEILSAPSKETPKVDDIPVPASDEVPNK 65
T ++ K+ K V++ + ++ +KKEKK +E + + K
Sbjct: 403 TGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEK-----------K 451
Query: 66 EEVEPEVAAPPQVKEDTKASKDKK 89
EE + E + +++ + K KK
Sbjct: 452 EEEKEEEEEEAEEEKEEEEEKKKK 475
Score = 29.5 bits (67), Expect = 4.5
Identities = 16/71 (22%), Positives = 30/71 (42%)
Query: 25 SKKSKKKEKKDLLDEILSAPSKETPKVDDIPVPASDEVPNKEEVEPEVAAPPQVKEDTKA 84
SKK+ KK KK + ++ K E +EE E + + +E+ +
Sbjct: 405 SKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEE 464
Query: 85 SKDKKLTHKEK 95
K+++ K+K
Sbjct: 465 EKEEEEEKKKK 475
>gnl|CDD|227478 COG5149, TOA1, Transcription initiation factor IIA, large chain
[Transcription].
Length = 293
Score = 30.4 bits (68), Expect = 2.6
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 391 EFEKQEKRIKELKAHG---QSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELI 444
+ E+ +R + H S+ A + T K E S L +D D G +E+
Sbjct: 186 DGERMRRRDGKQGIHQYERLSEGPAHAFKGKPTTAKDEGMFSDLDDSDVDSGDSEIE 242
>gnl|CDD|131688 TIGR02640, gas_vesic_GvpN, gas vesicle protein GvpN. Members of
this family are the GvpN protein associated with the
production of gas vesicles produced in some prokaryotes
to give cells buoyancy. This family belongs to a larger
family of ATPases (pfam07728) [Cellular processes,
Other].
Length = 262
Score = 30.1 bits (68), Expect = 2.9
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 172 GRRYGLVGPNGHGKTTLLRHIASRDLKVP 200
G L GP G GKTTL H+A R P
Sbjct: 21 GYPVHLRGPAGTGKTTLAMHVA-RKRDRP 48
>gnl|CDD|233256 TIGR01063, gyrA, DNA gyrase, A subunit. This model describes the
common type II DNA topoisomerase (DNA gyrase). Two
apparently independently arising families, one in the
Proteobacteria and one in Gram-positive lineages, are
both designated toposisomerase IV [DNA metabolism, DNA
replication, recombination, and repair].
Length = 800
Score = 30.4 bits (69), Expect = 3.1
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 217 LTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRIL 276
LT +E K + ELL A LE D + ++ L+ I EEL+ I +PR I+
Sbjct: 424 LTGLE-REKLQEEYKELLELIADLE--DILASEERVLEIIREELEEIKEQFGDPRRTEIV 480
Query: 277 AGLGFSRAMQD 287
++D
Sbjct: 481 YDESEDIDIED 491
>gnl|CDD|236408 PRK09200, PRK09200, preprotein translocase subunit SecA; Reviewed.
Length = 790
Score = 30.3 bits (69), Expect = 3.1
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 376 MFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKL 431
M KK+ K R+K++ K K+I +L+ S E + K + +++ + L
Sbjct: 1 MKKKLLGDIDKRRLKKYRKIVKQINKLEGKMSSLSDEELRQKTIEFKERLASGKTL 56
>gnl|CDD|191136 pfam04949, Transcrip_act, Transcriptional activator. This family
of proteins may act as a transcriptional activator. It
plays a role in stress response in plants.
Length = 160
Score = 29.0 bits (65), Expect = 3.3
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 390 KEFEKQEKRI----KELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQ 432
KE KRI +ELK GQ+ ++ EK+ KE L EKNK K Q
Sbjct: 84 KEVSMIRKRIDSVNRELKPLGQTCQKKEKEYKEALEAYNEKNKEKAQ 130
>gnl|CDD|223703 COG0630, VirB11, Type IV secretory pathway, VirB11 components, and
related ATPases involved in archaeal flagella
biosynthesis [Cell motility and secretion /
Intracellular trafficking and secretion].
Length = 312
Score = 30.0 bits (68), Expect = 3.4
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 167 LLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCE 209
L I + + G GKTTLL + +PP I+ E
Sbjct: 138 LAIEARKSIIICGGTASGKTTLLNALL---DFIPPEERIVTIE 177
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 30.4 bits (69), Expect = 3.6
Identities = 16/102 (15%), Positives = 28/102 (27%)
Query: 2 EDAPTHIEEDKKQEIKPVKEEKISKKSKKKEKKDLLDEILSAPSKETPKVDDIPVPASDE 61
+D + K + ++ S KS + + D++ + V S
Sbjct: 1227 DDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPP 1286
Query: 62 VPNKEEVEPEVAAPPQVKEDTKASKDKKLTHKEKKKMKKDME 103
P+K K K + K KK E
Sbjct: 1287 PPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSE 1328
>gnl|CDD|119417 cd00891, PI3Kc, Phosphoinositide 3-kinase (PI3K), catalytic domain;
The PI3K catalytic domain family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as the typical serine/threonine/tyrosine
protein kinases (PKs), aminoglycoside
phosphotransferase, choline kinase, and RIO kinases.
PI3Ks catalyze the transfer of the gamma-phosphoryl
group from ATP to the 3-hydroxyl of the inositol ring of
D-myo-phosphatidylinositol (PtdIns) or its derivatives.
PI3Ks play an important role in a variety of fundamental
cellular processes, including cell motility, the Ras
pathway, vesicle trafficking and secretion, immune cell
activation and apoptosis. They can be divided into three
main classes (I, II, and III), defined by their
substrate specificity, regulation, and domain structure.
Class I PI3Ks are the only enzymes capable of converting
PtdIns(4,5)P2 to the critical second messenger
PtdIns(3,4,5)P3. Class I enzymes are heterodimers and
exist in multiple isoforms consisting of one catalytic
subunit (out of four isoforms) and one of several
regulatory subunits. Class II PI3Ks comprise three
catalytic isoforms that do not associate with any
regulatory subunits. They selectively use PtdIns as a
susbtrate to produce PtsIns(3)P.
Length = 352
Score = 29.9 bits (68), Expect = 3.6
Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 23/115 (20%)
Query: 389 MKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPR 448
E KQ + I ELK + K+ + K++ ++E + +L+K + +
Sbjct: 1 RSELLKQVEVINELKTLAKKVKREKSKSQ-----RKELLREELKKLENNLPQE------- 48
Query: 449 EYVVKFSFPDPPPLQPPILGLHNVTFAY--EGMKPLL--MSKADEDQGPTELIQK 499
F+ P P L+ I GL KPL AD P ++I K
Sbjct: 49 -----FTLPLDPRLE--IKGLIIEKCKVMDSKKKPLWLVFKNADPSGEPIKVIFK 96
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 29.9 bits (68), Expect = 3.8
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 385 SKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELI 444
ER K +KQ K K+ + +++K A KK E +K + + +K D D +L
Sbjct: 408 PAERKKLRKKQRKAEKKAEKE-EAEKAAAKKKAEAAAKKAKGPDGETKKVDPDPLGEKLA 466
Query: 445 QKP 447
+
Sbjct: 467 RTE 469
>gnl|CDD|214697 smart00498, FH2, Formin Homology 2 Domain. FH proteins control
rearrangements of the actin cytoskeleton, especially in
the context of cytokinesis and cell polarisation.
Members of this family have been found to interact with
Rho-GTPases, profilin and other actin-assoziated
proteins. These interactions are mediated by the
proline-rich FH1 domain, usually located in front of FH2
(but not listed in SMART). Despite this cytosolic
function, vertebrate formins have been assigned
functions within the nucleus. A set of Formin-Binding
Proteins (FBPs) has been shown to bind FH1 with their WW
domain.
Length = 392
Score = 30.0 bits (68), Expect = 3.9
Identities = 16/62 (25%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 377 FKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADE 436
F K +++ ++E +K+ E++E+R K+L K+ E + +R++E+N S + +
Sbjct: 326 FLKEFSKAAEENIKKEEEEEERRKKLV-----KETTEYEQS--SSRQKERNPSMDFEVER 378
Query: 437 DQ 438
D
Sbjct: 379 DF 380
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 29.7 bits (67), Expect = 3.9
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 50 KVDDIPVPASDEVPNKEEVEPEVAAPPQVKEDTKASKDKKLTHKEKKKMKK 100
K + VP +E KEE + E +E+ ++K+ K+ KK+K+
Sbjct: 29 KEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKE 79
>gnl|CDD|218688 pfam05680, ATP-synt_E, ATP synthase E chain. This family consists
of several ATP synthase E chain sequences which are
components of the CF(0) subunit.
Length = 83
Score = 27.8 bits (62), Expect = 4.0
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 374 YSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKE 418
Y + +K +E+++E+E QEK I++ KA KKQA+++ K
Sbjct: 24 YGAKHQRSLKKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEAKS 68
>gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily). This Pfam
entry includes some of the AAA proteins not detected by
the pfam00004 model.
Length = 135
Score = 28.8 bits (65), Expect = 4.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 177 LVGPNGHGKTTLLRHIASR 195
LVGP G GK+ L +A+
Sbjct: 4 LVGPPGTGKSELAERLAAA 22
>gnl|CDD|222025 pfam13286, HD_assoc, Phosphohydrolase-associated domain. This
domain is found on bacterial and archaeal
metal-dependent phosphohydrolases.
Length = 91
Score = 27.8 bits (63), Expect = 4.3
Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 376 MFKKMYAQKSKERMKEFEKQEKRIKEL 402
+F+ +Y + E +E K + ++EL
Sbjct: 18 LFEYVY--RHPEVQREEYKARRIVREL 42
>gnl|CDD|144046 pfam00308, Bac_DnaA, Bacterial dnaA protein.
Length = 219
Score = 29.2 bits (66), Expect = 4.5
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 12/81 (14%)
Query: 150 ENFSISAKGNDLFVNANLLIAN--GRRYG---LVGPNGHGKTTLLRHIASRDLKVPPNID 204
ENF I N A L +A G+ Y + G G GKT LL I + L+ PN+
Sbjct: 8 ENFVIG-SSNRFAHAAALAVAEAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALRNFPNLR 66
Query: 205 ILYCEQEVVADDLT--AVESV 223
++Y + +++ V+++
Sbjct: 67 VVY----LTSEEFLNDFVDAL 83
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 29.8 bits (67), Expect = 4.6
Identities = 17/56 (30%), Positives = 33/56 (58%)
Query: 383 QKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQ 438
+ KE K+ + K++ E+K + ++AE K KE +++E K + ++ADED+
Sbjct: 369 ELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDK 424
>gnl|CDD|238542 cd01122, GP4d_helicase, GP4d_helicase is a homohexameric 5'-3'
helicases. Helicases couple NTP hydrolysis to the
unwinding of nucleic acid duplexes into their component
strands.
Length = 271
Score = 29.3 bits (66), Expect = 4.7
Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 4/26 (15%)
Query: 172 GRRYG----LVGPNGHGKTTLLRHIA 193
G R G L G GKTT LR A
Sbjct: 26 GLRKGELIILTAGTGVGKTTFLREYA 51
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 29.7 bits (67), Expect = 4.9
Identities = 45/190 (23%), Positives = 66/190 (34%), Gaps = 48/190 (25%)
Query: 160 DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR--------------------DLKV 199
D+ + LI G ++G G G +TLL+ IAS ++K
Sbjct: 75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKK 134
Query: 200 PPNIDILYC-EQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYE 258
D++Y E +V LT V T L+ A Q + +
Sbjct: 135 HYRGDVVYNAETDVHFPHLT---------VGET--------LDFAARCKTPQNRPDGVSR 177
Query: 259 ELKAIGADSAEPRARRILAGLGFSRAMQDRATKNF----SGGWRMRVSLARALYIEPTLL 314
E + A+ A +A G S + +F SGG R RVS+A A +
Sbjct: 178 E------EYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231
Query: 315 LLDEPTNHLD 324
D T LD
Sbjct: 232 CWDNATRGLD 241
Score = 28.9 bits (65), Expect = 8.2
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 298 RMRVSLARALYIEPTLLL-LDEPTNHLD 324
R R+++ L +P LLL LDEPT+ LD
Sbjct: 907 RKRLTIGVELVAKPKLLLFLDEPTSGLD 934
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 29.0 bits (65), Expect = 5.1
Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 12 KKQEIKPVKEEKISKKSKKKEKKDLLDEILSAPSKETPKVDDIPVPASDEVPNKEEVEPE 71
KK++ P K++ K KKK++K+ + E+ + ++ + ++ D+ + E + +
Sbjct: 52 KKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEEN-----DKKVDYELPKVQ 106
Query: 72 VAAPPQVKEDTKASKDKKLTHKEKKKMKKDM 102
A ED D KL + K K +
Sbjct: 107 NTAAEVNHEDVIDLSDLKLATENIIKDLKKI 137
>gnl|CDD|222689 pfam14335, DUF4391, Domain of unknown function (DUF4391). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and archaea.
Proteins in this family are typically between 220 and
257 amino acids in length.
Length = 221
Score = 29.1 bits (66), Expect = 5.2
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 12/101 (11%)
Query: 321 NHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLD------NVCNEIIHLDQQKLYYYKGNY 374
N D + V+ D + W + S L+ ++ N+II L+ G Y
Sbjct: 113 NQNDASKVVIEDYFATPWAFLDSLSLSLFSGLNLDALYESIVNQIIKLN---ASSNTGVY 169
Query: 375 SMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKK 415
++ ER+++ E+ EK I +LK + +KQ +K
Sbjct: 170 EKED---LKERVERLEQIEELEKEIAKLKKKLKKEKQFNRK 207
>gnl|CDD|221955 pfam13173, AAA_14, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily.
Length = 127
Score = 28.3 bits (64), Expect = 5.2
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 171 NGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILY 207
N + + GP GKTTLL L + +ILY
Sbjct: 1 NNKIIVITGPRQVGKTTLLLQFLKELL----SENILY 33
>gnl|CDD|221049 pfam11262, Tho2, Transcription factor/nuclear export subunit
protein 2. THO and TREX form a eukaryotic complex which
functions in messenger ribonucleoprotein metabolism and
plays a role in preventing the transcription-associated
genetic instability. Tho2, along with four other
subunits forms THO.
Length = 296
Score = 29.2 bits (66), Expect = 5.3
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 390 KEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQK--- 446
KE ++ + IK+L+ + + +KTK+ L E+ S D D+ + +Q
Sbjct: 55 KEKKRLKSLIKKLEEELKKHIEHNEKTKKRL---SEEKSSWFPSKDPDEINSAFLQLCIL 111
Query: 447 PR 448
PR
Sbjct: 112 PR 113
>gnl|CDD|220422 pfam09818, ABC_ATPase, Predicted ATPase of the ABC class. Members
of this family include various bacterial predicted ABC
class ATPases.
Length = 447
Score = 29.5 bits (67), Expect = 5.3
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 178 VGPNGHGKTTLLRHIAS 194
VG HGK+TLL +
Sbjct: 249 VGGGYHGKSTLLEALER 265
>gnl|CDD|226459 COG3950, COG3950, Predicted ATP-binding protein involved in
virulence [General function prediction only].
Length = 440
Score = 29.5 bits (66), Expect = 5.4
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 159 NDLFVNANLLIA--NGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNID 204
N+ NL I +VGPNG GKTT+L I + ID
Sbjct: 9 NNFRCFLNLDITFGESETTIIVGPNGSGKTTVLDAI---RNALNKFID 53
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 29.7 bits (67), Expect = 5.4
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
N S G + ++LAR L P +L+LDE T ++D
Sbjct: 476 NLSVGQKQLLALARVLVQTPQILILDEATANID 508
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 29.3 bits (66), Expect = 5.8
Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 27/107 (25%)
Query: 8 IEEDKKQEIKPVKEEKISKKSKKKEKKDLLDEILSAPSKETPKVDDIPVPASDEVPNKEE 67
++ K Q I + + EILS S+E KV A+ ++
Sbjct: 16 TQKSKLQPISYIYSNVLVLSK----------EILSTFSEEENKV------ATTSTKKDKK 59
Query: 68 VEPEVAAPPQVKEDTKASKDKKLTHKEKKKMKKDMEFQKQVETITKK 114
++ SK K K+KKK KK+ + + + + K
Sbjct: 60 -----------EDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKT 95
Score = 28.5 bits (64), Expect = 9.2
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 10 EDKKQEIKPVKEEKISKKSKKKEKKDLLDEILSAPSKETPKVDDIPVPASD 60
+ K++ + K++K KK K E + L SK+T K P P D
Sbjct: 64 NESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNED 114
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 28.9 bits (65), Expect = 5.8
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 14/89 (15%)
Query: 9 EEDKKQEIKPVKEEKISKKSKKKEKKDLLDEILSAPSKETPKVDDIPVPASDEVPNKEEV 68
EE+ + ++EE+ KK KKK+KK T K + A V +
Sbjct: 166 EEEVELLKARLEEERAKKKKKKKKKK-------------TKKNNATGSSAEATVSSAVPT 212
Query: 69 EPEVAAPPQVKEDTKASKDKKLTHKEKKK 97
E + QV E K K + + +K
Sbjct: 213 ELS-SGAGQVGEAKKLKKKRSIAPDNEKS 240
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 29.4 bits (67), Expect = 5.8
Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 19/98 (19%)
Query: 7 HIEEDKKQEIKPVKEEKISKKSKKKEKKDLLD--------------EILSAPSKETPKVD 52
H + ++ + E+K KK K+KEK++ L E+LS P + V
Sbjct: 607 HELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDEVKYLSLGQKGEVLSIPDDKEAIVQ 666
Query: 53 D----IPVPASD-EVPNKEEVEPEVAAPPQVKEDTKAS 85
+ VP SD E K + + + + S
Sbjct: 667 AGIMKMKVPLSDLEKIQKPKKKKKKKPKTVKPKPRTVS 704
>gnl|CDD|173184 PRK14721, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 420
Score = 29.1 bits (65), Expect = 5.9
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 168 LIANGRRYGLVGPNGHGKTTLLRHIASR 195
+I G Y L+GP G GKTT +A+R
Sbjct: 187 IIEQGGVYALIGPTGVGKTTTTAKLAAR 214
>gnl|CDD|214940 smart00962, SRP54, SRP54-type protein, GTPase domain. This entry
represents the GTPase domain of the 54 kDa SRP54
component, a GTP-binding protein that interacts with the
signal sequence when it emerges from the ribosome. SRP54
of the signal recognition particle has a three-domain
structure: an N-terminal helical bundle domain, a GTPase
domain, and the M-domain that binds the 7s RNA and also
binds the signal sequence. The extreme C-terminal region
is glycine-rich and lower in complexity and poorly
conserved between species. The GTPase domain is
evolutionary related to P-loop NTPase domains found in a
variety of other proteins.
Length = 197
Score = 28.5 bits (65), Expect = 6.1
Identities = 10/11 (90%), Positives = 10/11 (90%)
Query: 177 LVGPNGHGKTT 187
LVGPNG GKTT
Sbjct: 6 LVGPNGVGKTT 16
>gnl|CDD|233959 TIGR02639, ClpA, ATP-dependent Clp protease ATP-binding subunit
clpA. [Protein fate, Degradation of proteins, peptides,
and glycopeptides].
Length = 730
Score = 29.2 bits (66), Expect = 6.2
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 232 ELLAECAKLEAADFSSEQQEQLKEIYEELKAI--GADSAEPRARRILAGLGFSRA 284
++A+ AK+ SS+ +EQLK + + LKA G D A ++++ + SRA
Sbjct: 423 NVVAKMAKIPVKTVSSDDREQLKNLEKNLKAKIFGQDEA---IDQLVSAIKRSRA 474
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 29.6 bits (66), Expect = 6.3
Identities = 37/154 (24%), Positives = 55/154 (35%), Gaps = 35/154 (22%)
Query: 1 KEDAPTHIEEDKKQEIKPVKEEKISKKSKKKEKKDLLDEILSAPSKETPKVD-------- 52
KED +E DK ++ K +EE E + + E S P E +D
Sbjct: 3938 KEDDNKALE-DKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENEDLDLPEDLKLD 3996
Query: 53 -------------DIPVPASDEVPNKEEVEPEVAAPPQ----------VKEDTKASKDKK 89
D+ + A+DE NKEE + E P Q + ED +
Sbjct: 3997 EKEGDVSKDSDLEDMDMEAADE--NKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSD 4054
Query: 90 LTHKEKKKMKKDMEFQKQV-ETITKKGGQGHSEL 122
L ++K + E Q E T+ G + EL
Sbjct: 4055 LAEDDEKMNEDGFEENVQENEESTEDGVKSDEEL 4088
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 29.0 bits (65), Expect = 6.3
Identities = 20/76 (26%), Positives = 27/76 (35%)
Query: 25 SKKSKKKEKKDLLDEILSAPSKETPKVDDIPVPASDEVPNKEEVEPEVAAPPQVKEDTKA 84
+ E L +L+A E P + P P E K EPE P + +
Sbjct: 28 QEDFVGIELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEK 87
Query: 85 SKDKKLTHKEKKKMKK 100
K +K K K K K
Sbjct: 88 PKPEKKPKKPKPKPKP 103
Score = 28.6 bits (64), Expect = 7.7
Identities = 16/69 (23%), Positives = 20/69 (28%), Gaps = 9/69 (13%)
Query: 9 EEDKKQEIKPVKEEKISKKSKKKEKKDLLDEILSAPSKETPKVDDIPVPASDEVPNKEEV 68
E + + K EK KK K K K K PKV P P +
Sbjct: 78 EPTPPKPKEKPKPEKKPKKPKPKPK---------PKPKPKPKVKPQPKPKKPPSKTAAKA 128
Query: 69 EPEVAAPPQ 77
P +
Sbjct: 129 PAAPNQPAR 137
>gnl|CDD|183183 PRK11537, PRK11537, putative GTP-binding protein YjiA; Provisional.
Length = 318
Score = 28.9 bits (65), Expect = 6.5
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 177 LVGPNGHGKTTLLRHI 192
L G G GKTTLLRHI
Sbjct: 9 LTGFLGAGKTTLLRHI 24
>gnl|CDD|234175 TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of
this protein family are IcmF homologs and tend to be
associated with type VI secretion systems [Cellular
processes, Pathogenesis].
Length = 1169
Score = 29.2 bits (66), Expect = 6.7
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 175 YGLVGPNGHGKTTLLRH 191
Y ++GP G GKTTLL++
Sbjct: 114 YLVIGPPGSGKTTLLQN 130
>gnl|CDD|183704 PRK12726, PRK12726, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 407
Score = 28.9 bits (64), Expect = 6.7
Identities = 30/152 (19%), Positives = 68/152 (44%), Gaps = 10/152 (6%)
Query: 57 PASDEVPNKEEVEPEVAAPPQVKEDTKASKDKKLTHKEKKKMKKDME-FQKQVETITKKG 115
P +D++ KE++ +AA ++ + T +++K +E M+ ++ +++ ++
Sbjct: 81 PKTDDLLKKEKLLEMLAAGAELAQSTPLLEERKTQEEELSAMRLELAALNRELAVKMREE 140
Query: 116 GQGHSE---------LGDNFTISQMEKTGGQLAALENAVDIKVENFSISAKGNDLFVNAN 166
+ +S+ + D + M+ Q +E A + ++ + L V +
Sbjct: 141 REQNSDFVKFLKGRGISDTYVADFMQAGRKQFKQVETAHLDDITDWFVPYLSGKLAVEDS 200
Query: 167 LLIANGRRYGLVGPNGHGKTTLLRHIASRDLK 198
++N R L+G G GKTT L + + LK
Sbjct: 201 FDLSNHRIISLIGQTGVGKTTTLVKLGWQLLK 232
>gnl|CDD|213250 cd03283, ABC_MutS-like, ATP-binding cassette domain of MutS-like
homolog. The MutS protein initiates DNA mismatch repair
by recognizing mispaired and unpaired bases embedded in
duplex DNA and activating endo- and exonucleases to
remove the mismatch. Members of the MutS family possess
C-terminal domain with a conserved ATPase activity that
belongs to the ATP binding cassette (ABC) superfamily.
MutS homologs (MSH) have been identified in most
prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 199
Score = 28.4 bits (64), Expect = 6.7
Identities = 26/113 (23%), Positives = 40/113 (35%), Gaps = 27/113 (23%)
Query: 177 LVGPNGHGKTTLLRHIAS-------------RDLKVPPNIDILYCEQEVVADDLTAVESV 223
+ G N GK+T LR I ++PP I + V+DDL S
Sbjct: 30 ITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPV-KIFTSIR--VSDDLRDGISY 86
Query: 224 LKADVKRTELLAECAKLEAADF-----------SSEQQEQLKEIYEELKAIGA 265
A+++R + + E AK S E+Q + + LK
Sbjct: 87 FYAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNT 139
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 29.2 bits (65), Expect = 6.7
Identities = 14/58 (24%), Positives = 18/58 (31%)
Query: 44 PSKETPKVDDIPVPASDEVPNKEEVEPEVAAPPQVKEDTKASKDKKLTHKEKKKMKKD 101
+E +IP E E E + K K KKL K+ K D
Sbjct: 298 EEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDD 355
>gnl|CDD|184378 PRK13895, PRK13895, conjugal transfer protein TraM; Provisional.
Length = 144
Score = 28.1 bits (63), Expect = 7.0
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
Query: 243 ADFSSEQQEQLKEIYEELKAI----GADSAEPRARRIL-AGLGFSR-----AMQDRATKN 292
D + QQE L + EEL++I G D+ E +A RIL A L S+ MQ+ K
Sbjct: 38 QDSAKAQQEMLDQFKEELESIASRWGDDAKE-KAERILNAALAASKEAMAKGMQE-GAKA 95
Query: 293 FSGGWRMRVSLARALYIEPT 312
+ R +S + A P
Sbjct: 96 AAEAVRREISASLAELAAPV 115
>gnl|CDD|197777 smart00534, MUTSac, ATPase domain of DNA mismatch repair MUTS
family.
Length = 185
Score = 28.3 bits (64), Expect = 7.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 177 LVGPNGHGKTTLLRHIA 193
+ GPN GK+T LR +A
Sbjct: 4 ITGPNMGGKSTYLRQVA 20
>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 484
Score = 29.2 bits (66), Expect = 7.1
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 9/30 (30%)
Query: 175 YGLVGPNGHGKTT---------LLRHIASR 195
+ L+GP G GKTT ++RH AS+
Sbjct: 259 FALMGPTGVGKTTTTAKLAARCVMRHGASK 288
>gnl|CDD|235422 PRK05342, clpX, ATP-dependent protease ATP-binding subunit ClpX;
Provisional.
Length = 412
Score = 29.0 bits (66), Expect = 7.3
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 177 LVGPNGHGKTTLLRHIASRDLKVP 200
L+GP G GKT L + +A R L VP
Sbjct: 113 LIGPTGSGKTLLAQTLA-RILDVP 135
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 29.0 bits (65), Expect = 7.3
Identities = 11/55 (20%), Positives = 35/55 (63%)
Query: 382 AQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADE 436
A++++++ + ++K +++ A ++ KQAE+ K+ ++++ ++K ++A E
Sbjct: 77 AEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAE 131
>gnl|CDD|226999 COG4652, COG4652, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 657
Score = 28.9 bits (65), Expect = 7.5
Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 9/86 (10%)
Query: 93 KEKKKMKKDMEFQKQ------VETITKKGGQG--HSELGDNFTISQMEKTGGQLAALENA 144
E K++++ + +Q + Q + L F E+ G L +N
Sbjct: 310 TELKEIEESEKKWQQLDDYYTISFRGYDEKQSLQENMLWQTFLFKASEEEDG-LYLKDNN 368
Query: 145 VDIKVENFSISAKGNDLFVNANLLIA 170
D E+ GN L+VN N L A
Sbjct: 369 FDNPEEDNYSPDSGNVLYVNPNYLSA 394
>gnl|CDD|222194 pfam13521, AAA_28, AAA domain.
Length = 162
Score = 28.3 bits (64), Expect = 7.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 174 RYGLVGPNGHGKTTLLRHIASR 195
R + G GKTTLL +A+R
Sbjct: 1 RIVITGGPSTGKTTLLEALAAR 22
>gnl|CDD|216506 pfam01443, Viral_helicase1, Viral (Superfamily 1) RNA helicase.
Helicase activity for this family has been demonstrated
and NTPase activity. This helicase has multiple roles at
different stages of viral RNA replication, as dissected
by mutational analysis.
Length = 226
Score = 28.5 bits (64), Expect = 7.7
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 182 GHGKTTLLRHIASRDLKV--PPNIDILYCEQEVVADDLTAVESVLKADVKRTE---LLAE 236
G GK+TL+R + DL V P + ++ ++ V++ L A +K T +L E
Sbjct: 8 GCGKSTLIRKLLRTDLTVIRPTAELRTEGKPDLPNLNVRTVDTFLMALLKPTGKILILDE 67
Query: 237 CAKLEAA 243
L
Sbjct: 68 YTLLPPG 74
>gnl|CDD|233051 TIGR00611, recf, recF protein. All proteins in this family for
which functions are known are DNA binding proteins that
assist the filamentation of RecA onto DNA for the
initiation of recombination or recombinational repair.
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 365
Score = 28.9 bits (65), Expect = 7.8
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 177 LVGPNGHGKTTLLRHI 192
+VGPNG GKT LL I
Sbjct: 28 IVGPNGQGKTNLLEAI 43
>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO. Bacillus
spores are protected by a protein shell consisting of
over 50 different polypeptides, known as the coat. This
family of proteins has an important morphogenetic role
in coat assembly, it is involved in the assembly of at
least 5 different coat proteins including CotB, CotG,
CotS, CotSA and CotW. It is likely to act at a late
stage of coat assembly.
Length = 185
Score = 28.3 bits (63), Expect = 7.9
Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 16 IKPVKEEKISKKSKKKEKKDLLDEILSAPSKETPKVDDIPVPASDEVPNKEEVEPEVAAP 75
I +EK +K E +E +E K + P +++ ++E E E+A
Sbjct: 32 IIKKADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKE-EIAQE 90
Query: 76 PQVKEDTKASKDKKLTHKEKKKMKKDME 103
+ +E+ + K +++ ++KK K+M
Sbjct: 91 EEKEEEAEDVKQQEVFSFKRKKPFKEMN 118
>gnl|CDD|222258 pfam13604, AAA_30, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. There is a Walker A and
Walker B.
Length = 195
Score = 28.3 bits (64), Expect = 7.9
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 168 LIANGRRY-GLVGPNGHGKTTLLRHIA 193
++ +G R + GP G GKTT L+
Sbjct: 13 VLTSGDRVAVVQGPAGTGKTTSLKAAR 39
>gnl|CDD|213253 cd03286, ABC_MSH6_euk, ATP-binding cassette domain of eukaryotic
MutS6 homolog. The MutS protein initiates DNA mismatch
repair by recognizing mispaired and unpaired bases
embedded in duplex DNA and activating endo- and
exonucleases to remove the mismatch. Members of the MutS
family possess C-terminal domain with a conserved ATPase
activity that belongs to the ATP binding cassette (ABC)
superfamily. MutS homologs (MSH) have been identified in
most prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 218
Score = 28.5 bits (64), Expect = 8.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 177 LVGPNGHGKTTLLRHIA 193
L GPN GK+TLLR +
Sbjct: 35 LTGPNMGGKSTLLRTVC 51
>gnl|CDD|237202 PRK12788, flgH, flagellar basal body L-ring protein; Reviewed.
Length = 234
Score = 28.4 bits (63), Expect = 8.5
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 83 KASKDKKLTHKEKKKMKKDMEFQKQVETITKKGGQGHSELGDNFTISQMEKTGGQLAALE 142
KA+ D K + K +++ + + KG +L N + K G++ E
Sbjct: 90 KATLDNKTDRSRDSQTKFGLDYLAEFLPWSDKG-----KLTANVSSQTSTKGTGKIDRTE 144
Query: 143 NAVDIKVENFSISAKGNDLFVNANLLIA 170
++K FS++A D+ N NLLI+
Sbjct: 145 ---EVK---FSVAAIVVDVLPNGNLLIS 166
>gnl|CDD|152093 pfam11657, Activator-TraM, Transcriptional activator TraM. TraM is
required for quorum dependence. It binds to and
in-activates TraR which controls the replication of the
tumour-inducing virulence plasmid. TraM interacts in a
two-step process with DNA-TraR to form a large, stable
anti-activation complex.
Length = 144
Score = 27.8 bits (62), Expect = 8.6
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 11/58 (18%)
Query: 243 ADFSSEQQEQLKEIYEELKAI----GADSAEPRARRIL-AGLGFS-----RAMQDRAT 290
D + QQE L + EEL+ I G D+ E +A RIL A L S + +Q+ A
Sbjct: 38 QDSAKAQQEMLDQFKEELEGIASRWGDDAKE-KAERILNAALAASKEAMAKGLQESAK 94
>gnl|CDD|217884 pfam04086, SRP-alpha_N, Signal recognition particle, alpha subunit,
N-terminal. SRP is a complex of six distinct
polypeptides and a 7S RNA that is essential for
transferring nascent polypeptide chains that are
destined for export from the cell to the translocation
apparatus of the endoplasmic reticulum (ER) membrane.
SRP binds hydrophobic signal sequences as they emerge
from the ribosome, and arrests translation.
Length = 272
Score = 28.6 bits (64), Expect = 8.8
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 340 KTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM---FKKMYAQKSKERMKEFEKQE 396
+ +L +S+ LD+V L + +L K + F + + Q+ +E KE +KQ
Sbjct: 46 QKILHLSYIDKLLDDVRTIFRDLYKNQLRQEKARTTYDEEFDEYFDQQLRELEKESKKQA 105
Query: 397 KRIKELKAHGQSKKQAEKKTKEVL--TRKQEKNKSKLQKADEDQGPT 441
K K ++ +SKK KKT + + + +E + Q+ + T
Sbjct: 106 KSPKAMRTFEESKKS--KKTVDSMIERKPKEPGLKRKQRKKAQESAT 150
>gnl|CDD|221820 pfam12870, Lumazine_bd, Lumazine-binding domain. This is a family
of putative lipoproteins from bacteria. Many members of
the family are defined as having a lumazine-binding
domain. Lumazine is a fluorescent accessory protein
having 6,7-dimethyl-8-(1'-D-ribityl) lumazine (DMRL) as
its authentic chromophore; it modulates the emission of
bacterial luciferase to shorter wavelengths with
increasing luminous strength. The family is related to
the NTF2-like transpeptidase family.
Length = 108
Score = 27.1 bits (60), Expect = 8.9
Identities = 9/50 (18%), Positives = 23/50 (46%)
Query: 370 YKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEV 419
KG+Y K+ ++ + K E+ ++K + ++K + + K +
Sbjct: 19 KKGDYKDAVKLLTEEDRSPDKLKEQFAGKVKMMVDEMKAKIEKKGGVKII 68
>gnl|CDD|221803 pfam12846, AAA_10, AAA-like domain. This family of domains contain
a P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins.
Length = 316
Score = 28.5 bits (64), Expect = 8.9
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 8/35 (22%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK 198
N N+LI VGP+G GK+TLL+ +A R L
Sbjct: 1 NPNMLI--------VGPSGSGKSTLLKLLALRLLA 27
>gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G in
the GTP form binds to the ribosome, primarily through
the interaction of its EF-Tu-like domain with the 50S
subunit. The binding of EF-G to the ribosome in this
manner stimulates the GTPase activity of EF-G. On GTP
hydrolysis, EF-G undergoes a conformational change that
forces its arm deeper into the A site on the 30S
subunit. To accommodate this domain, the peptidyl-tRNA
in the A site moves to the P site, carrying the mRNA and
the deacylated tRNA with it. The ribosome may be
prepared for these rearrangements by the initial binding
of EF-G as well. The dissociation of EF-G leaves the
ribosome ready to accept the next aminoacyl-tRNA into
the A site. This group contains only bacterial members.
Length = 268
Score = 28.3 bits (64), Expect = 9.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 175 YGLVGPNGHGKTTLLRHIA 193
LVG +G GKTTL +
Sbjct: 2 IALVGHSGSGKTTLAEALL 20
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 28.7 bits (65), Expect = 9.6
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 386 KERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQ 445
+R+++ E++ +K+LKA +K+ K ++++KNK K K + L +
Sbjct: 375 LQRVEQLEQE---LKQLKAQPVGVAPEQKEKK----KEKKKNKKKKYKVPRGKIYKVLKE 427
Query: 446 KPREYV 451
R+ +
Sbjct: 428 ATRQDL 433
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 28.5 bits (64), Expect = 9.6
Identities = 12/51 (23%), Positives = 28/51 (54%)
Query: 383 QKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQK 433
+K +E++K + Q KR+K++ + ++K K R EK +++++
Sbjct: 280 EKLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKE 330
>gnl|CDD|226372 COG3854, SpoIIIAA, ncharacterized protein conserved in bacteria
[Function unknown].
Length = 308
Score = 28.3 bits (63), Expect = 9.6
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 177 LVGPNGHGKTTLLRHIA 193
++GP GKTTLLR IA
Sbjct: 142 IIGPPQVGKTTLLRDIA 158
>gnl|CDD|215949 pfam00496, SBP_bac_5, Bacterial extracellular solute-binding
proteins, family 5 Middle. The borders of this family
are based on the PDBSum definitions of the domain edges
for Salmonella typhimurium oppA.
Length = 362
Score = 28.6 bits (64), Expect = 9.8
Identities = 8/52 (15%), Positives = 16/52 (30%)
Query: 426 KNKSKLQKADEDQGPTELIQKPREYVVKFSFPDPPPLQPPILGLHNVTFAYE 477
+ A ++ +Y V+ + P PL P+L +
Sbjct: 49 DPDTPSPAASLLLADIVGVEAVDDYTVRITLKKPNPLFLPLLAALAAAIVKK 100
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.312 0.131 0.368
Gapped
Lambda K H
0.267 0.0889 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,937,076
Number of extensions: 2809854
Number of successful extensions: 6568
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6036
Number of HSP's successfully gapped: 1093
Length of query: 548
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 446
Effective length of database: 6,413,494
Effective search space: 2860418324
Effective search space used: 2860418324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (27.0 bits)