RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11936
(548 letters)
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 254 bits (650), Expect = 1e-74
Identities = 89/409 (21%), Positives = 151/409 (36%), Gaps = 45/409 (11%)
Query: 34 KDLLDEILSAPSKETPKVDDIPVPASDEVPNKEEVEPEVAAPPQVKEDTKASKDKKLTHK 93
+ + + E D+ ++ V+ D
Sbjct: 323 RRVGNVGEDDAIPELSHAGDVSTTLQVVNELLKDETVAPRFKIVVEYIAAIGADLIDERI 382
Query: 94 EKKKMKKDMEFQKQVETITKKGGQGHSELGDNFTISQMEKTGGQLAALENAVDIKVENFS 153
++ + +K + + + + + D+ FS
Sbjct: 383 IDQQAWFTHITPYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFS 442
Query: 154 ISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK---VPPNIDILYCEQ 210
++ L L + RRYG+ GPNG GK+TL+R IA+ + +Y E
Sbjct: 443 LAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEH 502
Query: 211 EVVA--DDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSA 268
++ D + ++ V ++ V E
Sbjct: 503 DIDGTHSDTSVLDFVFESGVGTKE------------------------------------ 526
Query: 269 EPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAV 328
+ L GF+ M SGGW+M+++LARA+ +LLLDEPTNHLD V
Sbjct: 527 --AIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNV 584
Query: 329 IWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQ-KSKE 387
WL NYL T + +SHD FLDNVC II+ + KL YKGN++ F K K+ E
Sbjct: 585 AWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYE 644
Query: 388 RMKEFEKQEKRIKELKAHG-QSKKQAEKKTKEVLTRKQEKNKSKLQKAD 435
+ + + K + G ++K++A K + + +K ++ +
Sbjct: 645 ELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDIN 693
Score = 163 bits (413), Expect = 7e-43
Identities = 33/173 (19%), Positives = 71/173 (41%), Gaps = 10/173 (5%)
Query: 204 DILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI 263
+L + ++ + SV A + R EL+ +K+ ++
Sbjct: 821 FLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKM---------VAEVDMKEALASGQ 871
Query: 264 GADSAEPRARRILAGLGFS-RAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNH 322
+ LG + + SGG ++++ LA + P L++LDEPTN+
Sbjct: 872 FRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNY 931
Query: 323 LDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375
LD +++ L L+ ++ ++I++H F N+ E+ + ++ N+
Sbjct: 932 LDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGHNWV 984
Score = 50.0 bits (119), Expect = 1e-06
Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 11/123 (8%)
Query: 147 IKVENFSISAKGND--LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR------DLK 198
+KV N G + N + R ++GPNG GK+TL+ + ++
Sbjct: 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 731
Query: 199 VPPNIDILYCEQEVVA-DDLTAVESVLK--ADVKRTELLAECAKLEAADFSSEQQEQLKE 255
N I Y +Q A + ++ + +T E + E + +
Sbjct: 732 THENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNK 791
Query: 256 IYE 258
I++
Sbjct: 792 IFK 794
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 114 bits (288), Expect = 3e-27
Identities = 58/289 (20%), Positives = 113/289 (39%), Gaps = 39/289 (13%)
Query: 150 ENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA------SRDLKVPPNI 203
E+ N + ++ +G G+VGPNG GKTT ++ +A + +
Sbjct: 95 EDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDN 154
Query: 204 DILYCEQEVVADDLTAV-ESVLKADVK--RTELLAECAKLEAADFSSEQQEQLKEIYEEL 260
I + + + ++ VK +LL + K +++E+ +++
Sbjct: 155 VIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVK-----------GKVRELLKKV 203
Query: 261 KAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPT 320
+G + ++ L + DR SGG RV++A AL + DEP+
Sbjct: 204 DEVG------KFEEVVKELELENVL-DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPS 256
Query: 321 NHLDLNA---VIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377
++LD+ V + L K +L+V HD + LD + + I +Y G Y +F
Sbjct: 257 SYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIH-----VVYGEPGVYGIF 311
Query: 378 KKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEK 426
++ R E + +K+ + + K E + ++E
Sbjct: 312 ----SKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERET 356
Score = 102 bits (255), Expect = 5e-23
Identities = 53/232 (22%), Positives = 94/232 (40%), Gaps = 46/232 (19%)
Query: 141 LENAVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK-- 198
+E ++ G+ I G G+VGPNG GKTT ++ +A +
Sbjct: 352 VERETLVEYPRLVKD-YGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLA-GVEEPT 409
Query: 199 ---VPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKE 255
V ++ + Y Q + A+ V ELL++ ++++ +S
Sbjct: 410 EGKVEWDLTVAYKPQYIKAEYEGTVY----------ELLSK---IDSSKLNSNF------ 450
Query: 256 IYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLL 315
+L LG + DR ++ SGG RV++A L + + L
Sbjct: 451 ---------------YKTELLKPLGIID-LYDRNVEDLSGGELQRVAIAATLLRDADIYL 494
Query: 316 LDEPTNHLD----LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLD 363
LDEP+ +LD L + + ++ +KT L+V HD +D V + +I +
Sbjct: 495 LDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE 546
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 101 bits (254), Expect = 5e-23
Identities = 41/220 (18%), Positives = 79/220 (35%), Gaps = 34/220 (15%)
Query: 148 KVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILY 207
K L V+ N G G++GPNG GKTT R + ++ +
Sbjct: 271 KWTKIIKKLGDFQLVVD-NGEAKEGEIIGILGPNGIGKTTFARILV-GEIT-ADEGSVTP 327
Query: 208 CEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADS 267
+Q + + ++ Q+ L+ ++ + +
Sbjct: 328 EKQILSYKP----------------------QRIFPNYDGTVQQYLENASKDALSTSSWF 365
Query: 268 AEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN- 326
E + L R + + + SGG ++ +A L E L +LD+P+++LD+
Sbjct: 366 FE----EVTKRLNLHRLL-ESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEE 420
Query: 327 -AVIW--LDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLD 363
++ + + K I+ HD S D + + II
Sbjct: 421 RYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFK 460
Score = 93.2 bits (232), Expect = 3e-20
Identities = 55/281 (19%), Positives = 106/281 (37%), Gaps = 29/281 (10%)
Query: 162 FVNANLLIAN-GRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAV 220
F L G++G NG GKTT+L+ +A ++ PN +
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAG---EIIPNFGDP--------NSKVGK 62
Query: 221 ESVLKADVKRTELLAECAKLEAADFSS----EQQEQLKEIYEELKAIGADSAEPRAR--R 274
+ VLK + E+ +L + + + E + + + R +
Sbjct: 63 DEVLK-RFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDE 121
Query: 275 ILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNY 334
+ L + ++ SGG R+ +A +L E + + D+P+++LD+ + +
Sbjct: 122 VKELLNMTNLW-NKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKA 180
Query: 335 LQGWK--KTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEF 392
++ K +++V HD LD + + I +Y Y K YA ++ + F
Sbjct: 181 IRELLKNKYVIVVDHDLIVLDYLTDLIHI-----IYGESSVYGRVSKSYA--ARVGINNF 233
Query: 393 EKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQK 433
K + +K K K+ ++ K K K K K
Sbjct: 234 LKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTK 274
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 99.3 bits (248), Expect = 3e-22
Identities = 51/217 (23%), Positives = 78/217 (35%), Gaps = 61/217 (28%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIA----------SRDLKV---PPNIDILYCEQ 210
I G G+VGPNG GKTT ++ +A DL V P I Y +
Sbjct: 304 VEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADY--E 361
Query: 211 EVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEP 270
V ELL++ ++
Sbjct: 362 GTVY-----------------ELLSK------------------------IDASKLNSNF 380
Query: 271 RARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD----LN 326
+L LG DR SGG RV++A L + + LLDEP+ +LD L
Sbjct: 381 YKTELLKPLGIIDLY-DREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLA 439
Query: 327 AVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLD 363
+ + ++ +KT L+V HD +D V + ++ +
Sbjct: 440 VSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFE 476
Score = 80.8 bits (200), Expect = 3e-16
Identities = 46/220 (20%), Positives = 92/220 (41%), Gaps = 24/220 (10%)
Query: 150 ENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCE 209
E+ N + ++ G G+VGPNG GK+T ++ +A ++ PN
Sbjct: 25 EDCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAG---QLIPN------- 74
Query: 210 QEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQ------LKEIYEELKAI 263
+ D + + V++ + EL KL+ + + Q + ++ +
Sbjct: 75 ---LCGDNDSWDGVIR-AFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL 130
Query: 264 GADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHL 323
+ ++ L + +R ++ SGG RV++A AL T DEP+++L
Sbjct: 131 KKADETGKLEEVVKALELENVL-EREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYL 189
Query: 324 DLNAVIWLDNYLQGWK---KTLLIVSHDQSFLDNVCNEII 360
D+ + ++ K++L+V HD + LD + + I
Sbjct: 190 DIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIH 229
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 95.0 bits (237), Expect = 5e-22
Identities = 48/252 (19%), Positives = 90/252 (35%), Gaps = 61/252 (24%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIAS------------ 194
I+++ +G + + IA G ++ L G NG GKTTLL + +
Sbjct: 22 IQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLF 81
Query: 195 -RDL-KVPPNIDIL-----YCEQEVVAD---DLTAVESVLKADVKRTELLAECAKLEAAD 244
+ KV + + + + ++ ++ V+ K + +
Sbjct: 82 GKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQD-------- 133
Query: 245 FSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNF---SGGWRMRV 301
E + A ++L +G M +A + S G + RV
Sbjct: 134 IDDEIRN-------------------EAHQLLKLVG----MSAKAQQYIGYLSTGEKQRV 170
Query: 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYL-----QGWKKTLLIVSHDQSFLDNVC 356
+ARAL +P +L+LDEP LD A L + L ++ V+H +
Sbjct: 171 MIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANF 230
Query: 357 NEIIHLDQQKLY 368
++I+ L +
Sbjct: 231 SKILLLKDGQSI 242
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 94.7 bits (236), Expect = 1e-20
Identities = 42/234 (17%), Positives = 89/234 (38%), Gaps = 45/234 (19%)
Query: 157 KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA----SRDLKVPPNIDILYCEQEV 212
+G+ + ++ ++G NG GKTTL++ +A + + P +++ Q++
Sbjct: 363 QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKI 422
Query: 213 VADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRA 272
A F +++++ + K G
Sbjct: 423 -----------------------------APKF----PGTVRQLFFK-KIRGQFLNPQFQ 448
Query: 273 RRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD----LNAV 328
++ L + D+ ++ SGG RV++ AL I + L+DEP+ +LD +
Sbjct: 449 TDVVKPLRIDDII-DQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICS 507
Query: 329 IWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQ--KLYYYKGNYSMFKKM 380
+ ++ KKT IV HD + +++I + K + + S+
Sbjct: 508 KVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTGC 561
Score = 85.1 bits (211), Expect = 2e-17
Identities = 47/248 (18%), Positives = 92/248 (37%), Gaps = 33/248 (13%)
Query: 142 ENAVDIK------VENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR 195
+A+ I + + N ++ G+ GLVG NG GK+T L+ +A
Sbjct: 67 FDAIQIINLPTNLEAHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAG- 125
Query: 196 DLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQL-- 253
K PN+ E + + +EL K+ D + + Q
Sbjct: 126 --KQKPNLGRFDDPPEWQ---------EIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVD 174
Query: 254 ---KEIYEELKAIG------ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304
+ I ++ +G + + +R + L + R + SGG R ++
Sbjct: 175 NIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVL-KRDIEKLSGGELQRFAIG 233
Query: 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQSFLDNVCNEIIH 361
+ E + + DEP+++LD+ + ++ K ++ V HD S LD + + +
Sbjct: 234 MSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCI 293
Query: 362 LDQQKLYY 369
+ Y
Sbjct: 294 IYGVPSVY 301
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 85.3 bits (212), Expect = 6e-19
Identities = 52/239 (21%), Positives = 91/239 (38%), Gaps = 50/239 (20%)
Query: 147 IKVENFSIS-AKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPP---N 202
+ VEN N LF N + G ++G NG GK+TLL + + P
Sbjct: 5 LSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLL-GIHR--PIQGK 61
Query: 203 IDIL----YCEQEVVAD-DLTAVESVL---KADVKRTELLAECAKLEAADFSSEQQEQLK 254
I++ + Q + + ++ VL + F+ + +
Sbjct: 62 IEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINT--------------FAKPKSHDYQ 107
Query: 255 EIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLL 314
+ L + LA R + SGG R + +ARA+ E L+
Sbjct: 108 VAMQALDYLNLTH--------LA---------KREFTSLSGGQRQLILIARAIASECKLI 150
Query: 315 LLDEPTNHLDLN---AVI-WLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369
LLDEPT+ LDL V+ L + Q T++ +H + + + N+ + L++Q +
Sbjct: 151 LLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKF 209
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 84.3 bits (209), Expect = 2e-18
Identities = 46/241 (19%), Positives = 80/241 (33%), Gaps = 65/241 (26%)
Query: 147 IKVENFSISAKGNDLFVNA----NLLIANGRRYGLVGPNGHGKTTLLRHIA--------- 193
I+++N I+ G + NL + NG + ++GPNG GKTTLLR I+
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGLLPYSGNI 60
Query: 194 ---SRDL-KVPPNIDI------LYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAA 243
++ K+ I Y V D + E + D
Sbjct: 61 FINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDL------------- 107
Query: 244 DFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303
+L L + R S G + V
Sbjct: 108 ----------------------------FLEMLKALKLGEEILRRKLYKLSAGQSVLVRT 139
Query: 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLD 363
+ AL +P ++ LDEP ++D + Y++ + K ++V+H+ L+ +
Sbjct: 140 SLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFL 199
Query: 364 Q 364
Sbjct: 200 V 200
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 83.4 bits (207), Expect = 3e-18
Identities = 47/197 (23%), Positives = 64/197 (32%), Gaps = 38/197 (19%)
Query: 166 NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225
+ + G LVGPNG GK+TLL +A I + Q +
Sbjct: 20 SGEVRAGEILHLVGPNGAGKSTLLARMA-GMT--SGKGSIQFAGQPL------------- 63
Query: 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIY--EELKAIGADSAEPRA--RRILAGLGF 281
T+L A L QQ+ + + L
Sbjct: 64 EAWSATKLALHRAYLS-------QQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALAL 116
Query: 282 SRAMQDRATKNFSGGWRMRVSLARAL-------YIEPTLLLLDEPTNHLDLNAVIWLDNY 334
R+T SGG RV LA + LLLLDEP N LD+ LD
Sbjct: 117 D-DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKI 175
Query: 335 LQGWKK---TLLIVSHD 348
L + +++ SHD
Sbjct: 176 LSALSQQGLAIVMSSHD 192
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 83.0 bits (206), Expect = 5e-18
Identities = 46/224 (20%), Positives = 79/224 (35%), Gaps = 52/224 (23%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLR-------------HIASRDLKVPPNI---DILY 207
+ I G +GL+GPNG GKTT LR + +++ P+ I Y
Sbjct: 33 GISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY 92
Query: 208 CEQEVVAD-DLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD 266
+E A ++ +E + A +
Sbjct: 93 LPEEAGAYRNMQGIEYL-------------------------------RFVAGFYASSSS 121
Query: 267 SAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN 326
E R G +S G ++ +ARAL + P L +LDEPT+ LD+
Sbjct: 122 EIEEMVERATEIAGLGEK-IKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVL 180
Query: 327 AVIWLDNYLQGWK---KTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
+ L+ T+L+ SH+ ++ +C+ I + +
Sbjct: 181 NAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTI 224
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 72.5 bits (179), Expect = 1e-14
Identities = 33/229 (14%), Positives = 62/229 (27%), Gaps = 72/229 (31%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLR-------------HIASRDLK--------VPPN 202
+ I G GPNG GKTTLL+ + +P
Sbjct: 27 RITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEE 86
Query: 203 IDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA 262
I I+ ++ + + + L
Sbjct: 87 I-IVP-------RKISVEDYL-------------------------------KAVASLY- 106
Query: 263 IGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNH 322
G + L + + S G RV LA L + + +LD+P
Sbjct: 107 -GVKVNKNEIMDALESVEVLDL--KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVA 163
Query: 323 LDLNAV--IW--LDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
+D ++ + + L+ ++ + S C+ +L +
Sbjct: 164 IDEDSKHKVLKSILEILKEKGIVIISSREELS----YCDVNENLHKYST 208
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 72.9 bits (180), Expect = 1e-14
Identities = 40/226 (17%), Positives = 83/226 (36%), Gaps = 47/226 (20%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI-DILYCEQEVVA-------- 214
++ + G ++GPNG GK+TL+ I + + + +++
Sbjct: 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFL---KADEGRVYFENKDITNKEPAELYH 81
Query: 215 -------------DDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELK 261
++T +E++L ++ E + L + + ++ +E+ E
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEICPGE-----SPLNSLFYKKWIPKE-EEMVE--- 132
Query: 262 AIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPT- 320
+A +IL L S +A SGG V + RAL P ++++DEP
Sbjct: 133 ---------KAFKILEFLKLSHLYDRKA-GELSGGQMKLVEIGRALMTNPKMIVMDEPIA 182
Query: 321 --NHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQ 364
+ + L+ T LI+ H + N + + +
Sbjct: 183 GVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFN 228
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 65.6 bits (161), Expect = 3e-12
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 13/98 (13%)
Query: 260 LKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEP 319
L+ + + R R + LG + + DR SGG R RV+LARAL I+P LLLLDEP
Sbjct: 95 LRNVERVERDRRVREMAEKLGIA-HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEP 153
Query: 320 TNHLDLNAVIWLDNYLQGWKK--------TLLIVSHDQ 349
+ +DL L + +L V+HD
Sbjct: 154 LSAVDLK----TKGVLMEELRFVQREFDVPILHVTHDL 187
Score = 34.8 bits (81), Expect = 0.040
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 163 VNANLLIANGRRY-GLVGPNGHGKTTLLRHIA 193
N+ GR Y L+GP G GK+ L IA
Sbjct: 14 FRLNVDFEMGRDYCVLLGPTGAGKSVFLELIA 45
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 68.0 bits (165), Expect = 5e-12
Identities = 90/631 (14%), Positives = 192/631 (30%), Gaps = 191/631 (30%)
Query: 3 DAPTHIEEDKKQEIKPVKEEKISKKSKKKEKKDLLDEILSAPSKETPKVDDIPVPASDEV 62
D T + + ++I V E+ K+ +D+ ILS +E +D I
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS--KEE---IDHII-----MS 57
Query: 63 PNKEEVEPEVAAPPQVKE--DTKASKDKKLTHK-EKKKMKKDMEF--------QKQVETI 111
+ T SK +++ K ++ ++ + +F Q+Q +
Sbjct: 58 KDAVS---------GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108
Query: 112 TKKGGQGHSEL-GDN-----FTISQMEKTGGQLAALENAVDIKVENFSISAKGNDLFVNA 165
T+ + L DN + +S+++ L A+ +L
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQP----YLKLRQAL-------------LELRPAK 151
Query: 166 NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV---PPN----IDILYCEQEVVADDLT 218
N+LI G++ G GKT + KV +++ C
Sbjct: 152 NVLI-----DGVL---GSGKTWVALD-VCLSYKVQCKMDFKIFWLNLKNCNSP------- 195
Query: 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRA------ 272
E+VL+ +++ + +D SS + ++ I EL+ +
Sbjct: 196 --ETVLEM-LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 273 ---RRILAGLGFS-RAM---QDRATKNF-SGGWRMRVSL---ARALYIEPTLLLL----- 316
+ S + + + + +F S +SL + L + LL
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 317 ----DEPTNHLDLN----AVIW---------LDNYLQ--GWKKTLLIVSHDQSFLDNVCN 357
D P L N ++I DN+ K T +I +S L+ +
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII----ESSLNVLEP 368
Query: 358 EIIHLDQQKLYYYKGNYSMFKK----------MYAQKSKERMKEFEKQEKRIKELKAHGQ 407
+ +K++ S+F + + + +L +
Sbjct: 369 A----EYRKMFD---RLSVFPPSAHIPTILLSLIWFDVIK-----SDVMVVVNKLHKYSL 416
Query: 408 SKKQAEKKTKEV-----LTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFPDPPPL 462
+KQ ++ T + + + +N+ L + ++ Y + +F +
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHR--------SIVDH---YNIPKTFDSDDLI 465
Query: 463 QPPI-------LGLHNVTFAYEGMKPLLMSKADEDQGPTELIQKPREYVVKFSFPDPPPL 515
P + +G H + + + T + + F F L
Sbjct: 466 PPYLDQYFYSHIGHH-------------LKNIEHPERMTLF---RMVF-LDFRF-----L 503
Query: 516 QPPILGLHNVTFAYEGMKPLLVDVRKPQKAI 546
+ I A + L ++ + I
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 62.0 bits (150), Expect = 1e-10
Identities = 53/292 (18%), Positives = 99/292 (33%), Gaps = 29/292 (9%)
Query: 83 KASKDKKLTHKEKKKMKKDMEFQK--QVETITKKGGQGHSELGDNFTISQMEKTGGQLAA 140
K K + T + D+ F+K IT++ +G+S + + +
Sbjct: 54 KDIKKDEFTKVGARDTYIDLIFEKDGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTE 113
Query: 141 LENAVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVP 200
+ + F ++F+NA + L +
Sbjct: 114 PSSKA---ISAFMEKLIPYNIFLNAIYIRQGQIDAILESD--------------EAREKV 156
Query: 201 PNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEEL 260
+ + E L+ ++ + E + + L S+ E EI+ E
Sbjct: 157 VREVLNLDKFETAYKKLSELKGGSGGTEELIEKVKKYKALAREAALSKIGELASEIFAEF 216
Query: 261 KAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYI------EPTLL 314
RA L ++R SGG R+ + LA L + E +LL
Sbjct: 217 TEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLL 276
Query: 315 LLDEPTNHLDLNAVIWLDNYLQGWKK---TLLIVSHDQSFLDNVCNEIIHLD 363
+LDEPT +LD L ++ + K +++VSHD+ D + +I +
Sbjct: 277 ILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAA-DHVIRIS 327
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 59.5 bits (145), Expect = 4e-10
Identities = 60/220 (27%), Positives = 97/220 (44%), Gaps = 38/220 (17%)
Query: 166 NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225
+L G ++G +G GK+T LR I L+ P I+ Q + +L +
Sbjct: 26 SLQARAGDVISIIGSSGSGKSTFLRCINF--LEKPSEGAIIVNGQNI---NLVRDKDGQL 80
Query: 226 ADVKRTELLAECAKLEAADFSSEQQ----------EQLKEIYEELKAIGADSAEPRARRI 275
+ +L +L F Q E + E ++ + A RA +
Sbjct: 81 KVADKNQLRLLRTRL-TMVF---QHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKY 136
Query: 276 LAGLGFSRAMQDRATKNF----SGGWRMRVSLARALYIEPTLLLLDEPTNHLD------- 324
LA +G + +RA + SGG + RVS+ARAL +EP +LL DEPT+ LD
Sbjct: 137 LAKVG----IDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEV 192
Query: 325 LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQ 364
L + L +G T+++V+H+ F +V + +I L Q
Sbjct: 193 LRIMQQLAE--EGK--TMVVVTHEMGFARHVSSHVIFLHQ 228
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 59.9 bits (146), Expect = 7e-10
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 17/101 (16%)
Query: 259 ELKAIGADSAEPRARRILA--GLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLL 316
K + D + R R +L L + +R SGG + RV+LARAL P +LL
Sbjct: 113 REKRVPKDEMDARVRELLRFMRLE---SYANRFPHELSGGQQQRVALARALAPRPQVLLF 169
Query: 317 DEPTNHLDLNAVIWLDNYLQGWKK--------TLLIVSHDQ 349
DEP +D + L+ + + T + V+HDQ
Sbjct: 170 DEPFAAIDTQ----IRRELRTFVRQVHDEMGVTSVFVTHDQ 206
Score = 39.9 bits (94), Expect = 0.002
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 144 AVDIKVENFSISAKGNDLFV-NANLLIANGRRYGLVGPNGHGKTTLLRHIA 193
++ I+ G V + I G GL+GP+G GKTT+LR IA
Sbjct: 12 SMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIA 62
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 59.5 bits (145), Expect = 8e-10
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 19/102 (18%)
Query: 260 LKAIGADSAEPRAR--RILA--GLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLL 315
L +A+ R R +L G+ + R SGG + R +LARAL +P L+L
Sbjct: 105 LGNGKGRTAQERQRIEAMLELTGIS---ELAGRYPHELSGGQQQRAALARALAPDPELIL 161
Query: 316 LDEPTNHLDLNAVIWLDNYLQGWKK--------TLLIVSHDQ 349
LDEP + LD L ++ + + VSHD+
Sbjct: 162 LDEPFSALDEQ----LRRQIREDMIAALRANGKSAVFVSHDR 199
Score = 37.2 bits (87), Expect = 0.011
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 166 NLLIANGRRYGLVGPNGHGKTTLLRHIA 193
+L + G ++G +G GKTTLLR +A
Sbjct: 24 SLSLDPGEILFIIGASGCGKTTLLRCLA 51
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 57.2 bits (139), Expect = 2e-09
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 5/111 (4%)
Query: 256 IYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLL 315
I++ A+ + RA L + SGG + RV++ARAL P ++L
Sbjct: 109 IFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIIL 168
Query: 316 LDEPTNHLDL---NAVIWLDNYL-QGWKKTLLIVSHDQSFLDNVCNEIIHL 362
D+PT LD ++ L L + KT+++V+HD + + II+L
Sbjct: 169 ADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN-VARFGERIIYL 218
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 58.0 bits (141), Expect = 3e-09
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 14/99 (14%)
Query: 260 LKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEP 319
++ + R L + DR SGG + RV+LARAL P +LLLDEP
Sbjct: 97 MRMKKIKDPK-RVLDTARDLKIE-HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEP 154
Query: 320 TNHLDLNAVIWLDNYLQGWKK--------TLLIVSHDQS 350
+ LD + T+L ++HDQ+
Sbjct: 155 LSALDPR----TQENAREMLSVLHKKNKLTVLHITHDQT 189
Score = 35.6 bits (83), Expect = 0.037
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIA 193
N +L + +G + ++GP G GKT L IA
Sbjct: 18 NLSLKVESGEYFVILGPTGAGKTLFLELIA 47
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 52.8 bits (127), Expect = 1e-08
Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 9/114 (7%)
Query: 250 QEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYI 309
E EI+ E RA L ++R SGG R+ + LA L +
Sbjct: 15 GELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAM 74
Query: 310 ------EPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK---TLLIVSHDQSFLDN 354
E +LL+LDEPT +LD L ++ + K +++VSHD+ D
Sbjct: 75 SLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDA 128
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 54.5 bits (132), Expect = 2e-08
Identities = 28/135 (20%), Positives = 62/135 (45%), Gaps = 4/135 (2%)
Query: 271 RARRILAGLGFSR-AMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA-- 327
++ + +G + +DR SGG + RV++A + EP +L+LDEP LD
Sbjct: 116 LVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKT 175
Query: 328 -VIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSK 386
++ + + KT++++SHD + N + ++ L++ K + +K +
Sbjct: 176 DLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFT 235
Query: 387 ERMKEFEKQEKRIKE 401
+M + + ++
Sbjct: 236 SKMLVMRRLVLKGED 250
Score = 40.7 bits (96), Expect = 6e-04
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 146 DIKVENFSIS-AKGNDLFVNA----NLLIANGRRYGLVGPNGHGKTTLLRHI 192
I+V N S +G L A +L+I G + G G GK+TLL+ +
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIV 53
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 53.4 bits (129), Expect = 4e-08
Identities = 53/231 (22%), Positives = 96/231 (41%), Gaps = 72/231 (31%)
Query: 166 NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD--------- 216
N+ I G ++GP+G GK+T LR + L+ +I+ + A D
Sbjct: 44 NVHIREGEVVVVIGPSGSGKSTFLRCLNL--LEDFDEGEIIIDGINLKAKDTNLNKVREE 101
Query: 217 -------------LTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI 263
+T + ++ A +K ++
Sbjct: 102 VGMVFQRFNLFPHMTVLNNITLAPMK------------------------------VRKW 131
Query: 264 GADSAEPRARRILAGLGFSRAMQDRATK---NFSGGWRMRVSLARALYIEPTLLLLDEPT 320
+ AE +A +L +G ++D+A + SGG RV++ARAL +EP ++L DEPT
Sbjct: 132 PREKAEAKAMELLDKVG----LKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPT 187
Query: 321 NHLD-------LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQ 364
+ LD L+ + L N +G T+++V+H+ F V + ++ +D
Sbjct: 188 SALDPEMVGEVLSVMKQLAN--EG--MTMVVVTHEMGFAREVGDRVLFMDG 234
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 55.0 bits (133), Expect = 5e-08
Identities = 74/332 (22%), Positives = 120/332 (36%), Gaps = 85/332 (25%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTT----LLR---------HIASRDLKVPPNID------ 204
NL + +G+ LVG +G GK+T + R I +D++ I+
Sbjct: 408 GLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIR---TINVRYLRE 464
Query: 205 -ILYCEQEVVADDLTAVESVL--KADVKRTELLAECAKL-EAADFSSEQQEQLKEIYEEL 260
I QE V T E++ + DV + + + K A DF +L ++ L
Sbjct: 465 IIGVVSQEPVLFATTIAENIRYGREDVTM-DEIEKAVKEANAYDFIM----KLPHQFDTL 519
Query: 261 KAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPT 320
+G R Q SGG + R+++ARAL P +LLLDE T
Sbjct: 520 --VG-----------------ERGAQ------LSGGQKQRIAIARALVRNPKILLLDEAT 554
Query: 321 NHLD-------LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQ--------- 364
+ LD A LD +G +T ++++H S + N + I D
Sbjct: 555 SALDTESEAVVQAA---LDKAREG--RTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQGNH 608
Query: 365 QKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQ 424
+L KG Y + + + K + + K + L R++
Sbjct: 609 DELMREKGIYFKLVMT------QTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRR 662
Query: 425 EKNKSKLQKADEDQGPTELIQKPREYVVKFSF 456
KS D+D+ + E V SF
Sbjct: 663 STRKSICGPHDQDR-KLSTKEALDEDVPPASF 693
Score = 47.0 bits (112), Expect = 1e-05
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 12/62 (19%)
Query: 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL-------NAVIWLDNYLQGWKKTLLIV 345
SGG + R+++ARAL +P +LLLDE T+ LD A LD +G +T +++
Sbjct: 1172 LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEA---LDKAREG--RTCIVI 1226
Query: 346 SH 347
+H
Sbjct: 1227 AH 1228
Score = 28.8 bits (65), Expect = 6.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 166 NLLIANGRRYGLVGPNGHGKTTLL 189
+L + G+ LVG +G GK+T++
Sbjct: 1053 SLEVKKGQTLALVGSSGCGKSTVV 1076
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 53.3 bits (129), Expect = 5e-08
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 268 AEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD--- 324
R L G ++D+ T S G + RV++A L +EP +L+LDEPT LD
Sbjct: 120 IRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMG 178
Query: 325 ---LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQ 364
+ ++ + T++I +HD + C+ + + +
Sbjct: 179 VSEIMKLL--VEMQKELGITIIIATHDIDIVPLYCDNVFVMKE 219
Score = 41.0 bits (97), Expect = 5e-04
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 147 IKVENFSIS-AKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHI 192
+KVE + + + G N+ I G ++G NG GK+TL ++
Sbjct: 8 LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNF 54
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 52.9 bits (128), Expect = 5e-08
Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 11/106 (10%)
Query: 263 IGADSAEPRARRILAGLGFSRAMQDRAT---KNFSGGWRMRVSLARALYIEPTLLLLDEP 319
A+ R +L+ LG + D+ + SGG + RV++ARAL EP LL DEP
Sbjct: 112 KPKKEAKERGEYLLSELG----LGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEP 167
Query: 320 TNHLDL---NAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHL 362
T +LD V+ + + ++++V+H++ L + + + +
Sbjct: 168 TGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE-LAELTHRTLEM 212
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 53.1 bits (128), Expect = 7e-08
Identities = 31/148 (20%), Positives = 58/148 (39%), Gaps = 31/148 (20%)
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAV-------IWLDNYLQGW--KKTL 342
SGG R R+SLARA+Y + L LLD P + I+ ++ + KT
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSP-----FGYLDVLTEKEIF-ESCVCKLMANKTR 212
Query: 343 LIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKEL 402
++V+ L ++I+ L + Y+Y G +S + +F + L
Sbjct: 213 ILVTSKMEHLKK-ADKILILHEGSSYFY-GTFSELQN--------LRPDFSSK------L 256
Query: 403 KAHGQSKKQAEKKTKEVLTRKQEKNKSK 430
+ + ++ +LT + +
Sbjct: 257 MGCDSFDQFSAERRNSILTETLHRFSLE 284
Score = 28.8 bits (65), Expect = 4.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLL 189
+ N I G+ + G G GKT+LL
Sbjct: 56 DINFKIERGQLLAVAGSTGAGKTSLL 81
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 51.8 bits (125), Expect = 1e-07
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 19/113 (16%)
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD-------LNAVIWLDNYLQGWKKTLLI 344
N SGG + RVSLARA+Y + L D+P + +D VI L+ KT ++
Sbjct: 127 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKN--KTRIL 184
Query: 345 VSHDQSFLDNVCNEIIHLDQ---------QKLYYYKGNYSMFKKMYAQKSKER 388
V+H S+L + II + Q+L G ++ F + YA
Sbjct: 185 VTHSMSYLPQ-VDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTYASHHHHH 236
Score = 33.3 bits (77), Expect = 0.16
Identities = 11/47 (23%), Positives = 20/47 (42%)
Query: 143 NAVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLL 189
N++ ++ F+ + I G +VG G GK++LL
Sbjct: 2 NSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLL 48
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 50.6 bits (122), Expect = 3e-07
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD-------LNAVIWLDNYLQGWKKTLLI 344
SGG R R+SLARA+Y + L LLD P +LD + + + KT ++
Sbjct: 130 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV--CKLMAN--KTRIL 185
Query: 345 VSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375
V+ L ++I+ L + Y+ G +S
Sbjct: 186 VTSKMEHLKK-ADKILILHEGSS-YFYGTFS 214
Score = 32.5 bits (75), Expect = 0.27
Identities = 12/48 (25%), Positives = 19/48 (39%)
Query: 142 ENAVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLL 189
V ++ G + + N I G+ + G G GKT+LL
Sbjct: 4 TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLL 51
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 49.7 bits (119), Expect = 1e-06
Identities = 26/168 (15%), Positives = 58/168 (34%), Gaps = 26/168 (15%)
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG------WKKTLLIV 345
S G + + LAR++ + +LLLDEP+ HLD ++ T+++
Sbjct: 155 VLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPV----TYQIIRRTLKQAFADCTVILC 210
Query: 346 SHDQSFLDNV--CNEIIHLDQ---------QKLYYYKGNYSMFKKMYAQKSKERMKEFEK 394
++ + C++ + +++ +LY+Y F + K +
Sbjct: 211 EAR---IEAMLECDQFLVIEENKVRQYDSILELYHYPA--DRFVAGFIGSPKMNFLPVKV 265
Query: 395 QEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTE 442
I +++ + + Q L E P++
Sbjct: 266 TATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEHLLPSD 313
Score = 32.4 bits (74), Expect = 0.35
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 146 DIKVENFSISAKGNDLFV--NANLLIANGRRYGLVGPNGHGKTTLLR 190
+ V++ + + N + I+ G+R GL+G G GK+TLL
Sbjct: 19 QMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLS 65
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 47.9 bits (115), Expect = 3e-06
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 7/75 (9%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN--AVIW--LDNYLQGWKKTLLIVSHDQ 349
SGG R R+++ARAL P +L+ DE T+ LD VI + +G +T++I++H
Sbjct: 147 SGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKG--RTVIIIAHRL 204
Query: 350 SFLDNVCNEIIHLDQ 364
S + N + II +++
Sbjct: 205 STVKN-ADRIIVMEK 218
Score = 37.1 bits (87), Expect = 0.010
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 146 DIKVEN--FSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTL 188
DI N F + N NL I G G+VG +G GK+TL
Sbjct: 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTL 51
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 46.9 bits (112), Expect = 1e-05
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 287 DRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
+ + SG + RV+LARAL +P+LLLLDEP ++LD
Sbjct: 135 NHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
Score = 41.1 bits (97), Expect = 6e-04
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIA 193
N N+ I NG R+G++GP+G GKTT +R IA
Sbjct: 23 NVNINIENGERFGILGPSGAGKTTFMRIIA 52
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 44.4 bits (104), Expect = 2e-05
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 14/80 (17%)
Query: 382 AQKSKERMKEF-EKQEKRIKELKAHGQSKKQA--EKKTKEV------LTRKQEKNKSKLQ 432
+ E ++++ E+Q KR++EL A + +Q EK K++ + + EKNK +
Sbjct: 80 LTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNR 139
Query: 433 KADEDQGPTELIQKPREYVV 452
AD+ Q+P ++
Sbjct: 140 IADK-----AFYQQPDADII 154
Score = 35.1 bits (80), Expect = 0.031
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 377 FKKMYAQK-SKERMKEFEKQEKRIKELKA-HGQSKKQAEKKTKEVLTRKQEKNKSKLQKA 434
+K + + ++ E E +EK K+L+ + + +Q EK R + K+ Q+
Sbjct: 94 QRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN--NRIAD--KAFYQQP 149
Query: 435 DED 437
D D
Sbjct: 150 DAD 152
Score = 28.2 bits (62), Expect = 4.7
Identities = 9/67 (13%), Positives = 31/67 (46%), Gaps = 10/67 (14%)
Query: 72 VAAPPQVKEDTKASKDKKLTHKEKKKM-KKDMEFQKQVETITKKGGQGHSELGDNFTIS- 129
+A ++ ++ ++ +K +++K++ + D + + +K + +L + +
Sbjct: 74 IAQADRLTQEPESI--RKWREEQRKRLQELDAASKVMEQEWREKAKK---DL-EEWNQRQ 127
Query: 130 --QMEKT 134
Q+EK
Sbjct: 128 SEQVEKN 134
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 44.1 bits (105), Expect = 5e-05
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 10/61 (16%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN-------AVIWLDNYLQGWKKTLLIVS 346
SGG R V+LARAL +P LL+LD T+ LD L + +T+L+++
Sbjct: 158 SGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRL---LYESPEWASRTVLLIT 214
Query: 347 H 347
Sbjct: 215 Q 215
Score = 28.3 bits (64), Expect = 6.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 166 NLLIANGRRYGLVGPNGHGKTTL 188
+ G+ LVGPNG GK+T+
Sbjct: 39 TFTLYPGKVTALVGPNGSGKSTV 61
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 44.5 bits (106), Expect = 7e-05
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 12/61 (19%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDL-------NAVIWLDNYLQGWKKTLLIVS 346
SGG + R+++ARAL P +LLLDE T+ LD A LD + G +T+L+++
Sbjct: 485 SGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEA---LDRLMDG--RTVLVIA 539
Query: 347 H 347
H
Sbjct: 540 H 540
Score = 30.6 bits (70), Expect = 1.6
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 162 FVNANLLIANGRRYGLVGPNGHGKTT----LLR 190
F + +L I +G LVGP+G GK+T LLR
Sbjct: 360 FQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLR 392
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 43.7 bits (104), Expect = 1e-04
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 12/63 (19%)
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL-------NAVIWLDNYLQGWKKTLLI 344
+ SGG R RV++ARAL + +L+LDE T+ LD A LD + KT+L+
Sbjct: 480 SLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAA---LDELQKN--KTVLV 534
Query: 345 VSH 347
++H
Sbjct: 535 IAH 537
Score = 32.6 bits (75), Expect = 0.37
Identities = 11/45 (24%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 146 DIKVENFSISAKGNDLFV--NANLLIANGRRYGLVGPNGHGKTTL 188
++ V++ + + +G + + + I G+ LVG +G GK+T+
Sbjct: 341 EVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTI 385
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 43.1 bits (102), Expect = 2e-04
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 13/72 (18%)
Query: 260 LKAIGADSAE--PRARRILA--GLGFSRAMQDRATK---NFSGGWRMRVSLARALYIEPT 312
L+ E R +L+ GLG D+ N SGG + RV++ARAL P
Sbjct: 130 LELDNTPKDEVKRRVTELLSLVGLG------DKHDSYPSNLSGGQKQRVAIARALASNPK 183
Query: 313 LLLLDEPTNHLD 324
+LL D+ T+ LD
Sbjct: 184 VLLCDQATSALD 195
Score = 36.5 bits (85), Expect = 0.019
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 122 LGDNFTISQMEKTGGQLAALENAVDIKVENFSISAKGNDLFVNA----NLLIANGRRYGL 177
+G + + G + + + IK+ N + + A +L + G+ YG+
Sbjct: 1 MGHHHHHHHHHHSSGHIDDDDKHM-IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGV 59
Query: 178 VGPNGHGKTTLLRHI 192
+G +G GK+TL+R +
Sbjct: 60 IGASGAGKSTLIRCV 74
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 43.3 bits (103), Expect = 2e-04
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 12/63 (19%)
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL-------NAVIWLDNYLQGWKKTLLI 344
SGG R R+++ARAL + +L+LDE T+ LD A LD + +T L+
Sbjct: 480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAA---LDELQKN--RTSLV 534
Query: 345 VSH 347
++H
Sbjct: 535 IAH 537
Score = 32.6 bits (75), Expect = 0.37
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 146 DIKVENFSISAKGNDLFV--NANLLIANGRRYGLVGPNGHGKTTL 188
D++ N + + G ++ N NL I G+ LVG +G GK+T+
Sbjct: 341 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTI 385
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 42.9 bits (101), Expect = 2e-04
Identities = 26/156 (16%), Positives = 51/156 (32%), Gaps = 11/156 (7%)
Query: 209 EQEVVADDLTAVESVLKADVKRTELLAE--CAKLEAADFSSEQQEQLKEIYEELKAIGAD 266
+ +L + L V+ + + A + +++ E +
Sbjct: 195 ARLKEMSNLEKEKEKLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDL 254
Query: 267 SAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYI-------EPTLLLLDEP 319
+ N SGG ++ V+L+ L I ++LDEP
Sbjct: 255 PYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEP 314
Query: 320 TNHLDLNAVIWLDNYLQGWKKT--LLIVSHDQSFLD 353
T +LD N L + K ++I++H + D
Sbjct: 315 TVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELED 350
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 42.6 bits (101), Expect = 2e-04
Identities = 26/123 (21%), Positives = 53/123 (43%), Gaps = 25/123 (20%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLD-------LNAVIWLDNYLQGWKKTLLIVS 346
SGG + RV++AR + P ++LLDE T+ LD + L +T ++V+
Sbjct: 192 SGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQAS---LAKVCAN--RTTIVVA 246
Query: 347 HDQSFLDNVCNEIIHLDQ---------QKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEK 397
H S + N ++I+ + + L G Y+ M+ + + + + +
Sbjct: 247 HRLSTVVN-ADQILVIKDGCIVERGRHEALLSRGGVYA---DMWQLQQGQEETSEDTKPQ 302
Query: 398 RIK 400
++
Sbjct: 303 TME 305
Score = 32.6 bits (75), Expect = 0.29
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHI 192
+ + + G+ LVGP+G GK+T+LR +
Sbjct: 72 DVSFTVMPGQTLALVGPSGAGKSTILRLL 100
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 42.2 bits (100), Expect = 2e-04
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 25/111 (22%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLD-------LNAVIWLDNYLQGWKKTLLIVS 346
SGG R R+++AR L +P +++ DE T+ LD A +++ + +TL+I++
Sbjct: 157 SGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKA---VEDLRKN--RTLIIIA 211
Query: 347 HDQSFLDNVCNEIIHLDQ---------QKLYYYKGNYSMFKKMYAQKSKER 388
H S + + II L++ + L G Y+ +M+ +S
Sbjct: 212 HRLSTISS-AESIILLNKGKIVEKGTHKDLLKLNGEYA---EMWNMQSGGN 258
Score = 33.3 bits (77), Expect = 0.14
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHI 192
+ N I +G LVG G GK+T+ + +
Sbjct: 38 SINFFIPSGTTCALVGHTGSGKSTIAKLL 66
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 2e-04
Identities = 36/180 (20%), Positives = 65/180 (36%), Gaps = 60/180 (33%)
Query: 107 QVETITKKGGQ-------GHSELGDNFTISQMEKTGGQLAA------LENAVDIKVENFS 153
E + KG GHS LG E LA+ +E+ V++
Sbjct: 1743 AFEDLKSKGLIPADATFAGHS-LG--------EYAA--LASLADVMSIESLVEV------ 1785
Query: 154 ISAKGNDLFVNANLLIANGR-RYGL--VGPNGHGKT-------TLLRHIASRDLKV--PP 201
+ +G A GR YG+ + P + ++ + R +
Sbjct: 1786 VFYRGM-TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV 1844
Query: 202 NIDILY-CE--QEVVADDLTAVE---SVLKA-DVKRTELLAECAKLEAADFSSEQ-QEQL 253
N Y E Q V A DL A++ +VL +++ +++ +L+ + S E+ + L
Sbjct: 1845 N----YNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDII----ELQKS-LSLEEVEGHL 1895
Score = 37.3 bits (86), Expect = 0.015
Identities = 61/345 (17%), Positives = 110/345 (31%), Gaps = 116/345 (33%)
Query: 115 GGQGHS-----ELGDNFTISQ------MEKTGGQLAAL-ENAVDIKV---ENFSI----- 154
GGQG++ EL D + ++ + L+ L +D + + +I
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 155 ---SAKGNDLFVNANL---LI-----AN--------GRRYG-----LVGPNGHGKT---- 186
+ D ++ + LI A+ G G L G GH +
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 187 --------------------TLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE----- 221
T+L I R + PN + ++ D L E
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL---PPSILEDSLENNEGVPSP 337
Query: 222 --SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD----SAEPRARRI 275
S+ +++ + ++ K + + +Q + L GA S P++
Sbjct: 338 MLSI--SNLTQEQVQDYVNKTNSHLPAGKQ------VEISLV-NGAKNLVVSGPPQS--- 385
Query: 276 LAGLGFSRAMQDRATKNFSGGWRMRVSLA-RALYIEPTLLLLDEP--TNHL-DLNAVIWL 331
L GL + R K SG + R+ + R L L + P ++ L + +I
Sbjct: 386 LYGL----NLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINK 441
Query: 332 D---NYLQGWKKTLLI-VSH----------DQSFLDNVCNEIIHL 362
D N + K + I V S + + + II L
Sbjct: 442 DLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRL 486
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 42.6 bits (101), Expect = 2e-04
Identities = 20/38 (52%), Positives = 27/38 (71%)
Query: 287 DRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
+R SGG + RV++ARAL EP +LLLDEP ++LD
Sbjct: 128 NRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165
Score = 36.0 bits (84), Expect = 0.027
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIA 193
N NL I +G L+GP+G GK+TLL IA
Sbjct: 21 NINLKIKDGEFMALLGPSGSGKSTLLYTIA 50
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 42.5 bits (100), Expect = 2e-04
Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 13/115 (11%)
Query: 248 EQQEQLKEIYEELKAIGADSAEPRARRIL----AGLGFSRAMQDRATKNFSGGWRMRVSL 303
L+ + + KA R G +R + SGG R +S+
Sbjct: 231 FTGRVLEAVLKRTKAYLDILTNGRFDIDFDDEKGGFIIKDWGIERPARGLSGGERALISI 290
Query: 304 ARALYIEPTL------LLLDEPTNHLD---LNAVIWLDNYLQGWKKTLLIVSHDQ 349
+ A+ + +DE + LD + + L+ K ++ ++HD+
Sbjct: 291 SLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDR 345
Score = 28.3 bits (63), Expect = 6.9
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 175 YGLVGPNGHGKTTLL 189
+ GPNG GK++L
Sbjct: 26 TVVEGPNGAGKSSLF 40
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 41.7 bits (99), Expect = 3e-04
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 6/58 (10%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN--AVI--WLDNYLQGWKKTLLIVSH 347
SGG R R+++ARA P +L+LDE T LD +++ LD+ ++G +T L+++H
Sbjct: 141 SGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKG--RTTLVIAH 196
Score = 30.5 bits (70), Expect = 1.1
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLR 190
+ + GP+G GK+T+
Sbjct: 20 DISFEAQPNSIIAFAGPSGGGKSTIFS 46
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 41.4 bits (98), Expect = 7e-04
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 13/84 (15%)
Query: 291 KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN--AVIW--LDNYLQGWKKTLLIVS 346
+NFSGG + R+S+ARAL +P +L+LD+ T+ +D I L Y +G T I++
Sbjct: 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKG--CTTFIIT 535
Query: 347 HDQ---SFLDNVCNEIIHLDQQKL 367
Q + L ++I+ L + K+
Sbjct: 536 --QKIPTALL--ADKILVLHEGKV 555
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 41.1 bits (97), Expect = 7e-04
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 260 LKAIGADSAEPRAR-----RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLL 314
LK E R +L + + +R SGG R RV++ARA+ +EP +L
Sbjct: 108 LKIKKFPKDEIDKRVRWAAELL-QIE---ELLNRYPAQLSGGQRQRVAVARAIVVEPDVL 163
Query: 315 LLDEPTNHLD 324
L+DEP ++LD
Sbjct: 164 LMDEPLSNLD 173
Score = 35.3 bits (82), Expect = 0.051
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIA 193
NL I +G L+GP+G GKTT LR IA
Sbjct: 29 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIA 58
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 40.7 bits (96), Expect = 9e-04
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 260 LKAIGADSAEPRAR-----RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLL 314
L+A E R R L + + DR SGG + RV+LARAL +P +L
Sbjct: 100 LRARRISKDEVEKRVVEIARKL-LID---NLLDRKPTQLSGGQQQRVALARALVKQPKVL 155
Query: 315 LLDEPTNHLD 324
L DEP ++LD
Sbjct: 156 LFDEPLSNLD 165
Score = 34.9 bits (81), Expect = 0.052
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIA 193
+ + +G L+GP+G GKTT L +A
Sbjct: 21 GVSFEVKDGEFVALLGPSGCGKTTTLLMLA 50
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 40.3 bits (95), Expect = 0.001
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 260 LKAIGADSAEPRAR-----RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLL 314
LK E R +L GL + +R + SGG R RV+L RA+ +P +
Sbjct: 106 LKLRKVPRQEIDQRVREVAELL-GLT---ELLNRKPRELSGGQRQRVALGRAIVRKPQVF 161
Query: 315 LLDEPTNHLD 324
L+DEP ++LD
Sbjct: 162 LMDEPLSNLD 171
Score = 34.9 bits (81), Expect = 0.056
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIA 193
+L + +G L+GP+G GKTT LR IA
Sbjct: 21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIA 50
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 40.3 bits (95), Expect = 0.002
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 12/63 (19%)
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL-------NAVIWLDNYLQGWKKTLLI 344
SGG + R+S+AR P +L+LDE T+ LDL A LD + +T LI
Sbjct: 477 KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEA---LDVLSKD--RTTLI 531
Query: 345 VSH 347
V+H
Sbjct: 532 VAH 534
Score = 33.3 bits (77), Expect = 0.21
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 146 DIKVEN--FSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTL 188
I +++ F + + + NL I G VG +G GK+TL
Sbjct: 339 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTL 383
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 36.8 bits (86), Expect = 0.015
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 260 LKAIGADSAEPRAR-----RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLL 314
LK GA R +L L + DR K SGG R RV++ R L EP++
Sbjct: 100 LKLAGAKKEVINQRVNQVAEVL-QLA---HLLDRKPKALSGGQRQRVAIGRTLVAEPSVF 155
Query: 315 LLDEPTNHLD 324
LLDEP ++LD
Sbjct: 156 LLDEPLSNLD 165
Score = 33.7 bits (78), Expect = 0.15
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 177 LVGPNGHGKTTLLRHIA 193
VGP+G GK+TLLR IA
Sbjct: 34 FVGPSGCGKSTLLRMIA 50
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.065
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 248 EQQEQLKEIYEELKAIGADSAEPRARRILAGL 279
E+Q LK++ LK DSA P A I A +
Sbjct: 18 EKQ-ALKKLQASLKLYADDSA-P-ALAIKATM 46
Score = 29.1 bits (64), Expect = 2.1
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 20/50 (40%)
Query: 12 KKQEIKPVKEEKISKKSKKKEKKDLLDEILSAPSKETPKVDDIPVPASDE 61
+KQ +K K+ + S K D SAP+ + + A+ E
Sbjct: 18 EKQALK-----KL-QASLKLYADD------SAPA--------LAIKATME 47
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 34.4 bits (80), Expect = 0.067
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPT 320
SGG + +++ RAL P LL++DEP+
Sbjct: 141 SGGEQQMLAIGRALMSRPKLLMMDEPS 167
Score = 34.0 bits (79), Expect = 0.089
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 177 LVGPNGHGKTTLLRHIA 193
L+G NG GKTT L IA
Sbjct: 37 LIGANGAGKTTTLSAIA 53
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, binding; 1.70A {Thermus thermophilus} PDB:
2d2f_A*
Length = 250
Score = 32.5 bits (75), Expect = 0.28
Identities = 51/238 (21%), Positives = 96/238 (40%), Gaps = 51/238 (21%)
Query: 148 KVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILY 207
++ + S G + NL++ G + L+GPNG GK+TL + +A +IL
Sbjct: 5 EIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILL 64
Query: 208 CEQEVVADDL---------------TAVESVLKADVKRTELLAECAK-LEAADFSSEQQE 251
+ ++ V V A+ R L A+ + + A+F
Sbjct: 65 DGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEF------ 118
Query: 252 QLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKN--FSGGWRMRVSLARALYI 309
++ + L+ L + + R N FSGG + R + + L +
Sbjct: 119 -WTKVKKALEL----------------LDWDESYLSRYL-NEGFSGGEKKRNEILQLLVL 160
Query: 310 EPTLLLLDEPTNHLDLNAV------IWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIH 361
EPT +LDE + LD++A+ + N ++G L+++H Q L+ + + +H
Sbjct: 161 EPTYAVLDETDSGLDIDALKVVARGV---NAMRGPNFGALVITHYQRILNYIQPDKVH 215
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 31.1 bits (70), Expect = 0.53
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 174 RYGLVGPNGHGKTTLLRHIASR 195
+ + G G GKTTL++ I R
Sbjct: 2 KIIITGEPGVGKTTLVKKIVER 23
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 31.8 bits (73), Expect = 0.71
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
+ S G R +++ RA P +L+LDE T+++D
Sbjct: 491 DLSQGQRQLLAITRAFLANPKILILDEATSNVD 523
Score = 29.4 bits (67), Expect = 3.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTL 188
+ I G++ LVGP G GKTT+
Sbjct: 373 DITFHIKPGQKVALVGPTGSGKTTI 397
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I
2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V
3jyw_N
Length = 184
Score = 30.7 bits (69), Expect = 0.77
Identities = 8/42 (19%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 5 PTHIE---EDKKQEIKPVKEEKISKKSKKKEKKDLLDEILSA 43
P+HIE +K++ + E+K+ + + ++ + + ++A
Sbjct: 143 PSHIELVVTEKEEAVAKAAEKKVVRLTSRQRGRIAAQKRIAA 184
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 31.3 bits (72), Expect = 0.87
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 22/68 (32%)
Query: 267 SAEPRARRILA-----GLGFSRAMQDRATKNFSGGWRMRVSLA---------RALYIEPT 312
+ E R L GLG+ R Q AT SGG R+ LA +Y+
Sbjct: 702 ADESAIFRALDTLREVGLGYLRLGQ-PAT-ELSGGEAQRIKLATELRRSGRGGTVYV--- 756
Query: 313 LLLLDEPT 320
LDEPT
Sbjct: 757 ---LDEPT 761
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 30.2 bits (69), Expect = 1.3
Identities = 48/250 (19%), Positives = 95/250 (38%), Gaps = 71/250 (28%)
Query: 148 KVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILY 207
+++ +S + + +L + G + ++GPNG GK+TL +A R+ + +
Sbjct: 22 SIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEF 81
Query: 208 CEQEVVADDL----------------------------TAVESVLKADVKRTELLAECAK 239
++++A TA+ +V +
Sbjct: 82 KGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQ--------ET 133
Query: 240 LEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKN--FSGGW 297
L+ DF + E++ L + R+ N FSGG
Sbjct: 134 LDRFDF-------QDLMEEKIAL----------------LKMPEDLLTRSV-NVGFSGGE 169
Query: 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAV------IWLDNYLQGWKKTLLIVSHDQSF 351
+ R + + +EP L +LDE + LD++A+ + N L+ K++ +IV+H Q
Sbjct: 170 KKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGV---NSLRDGKRSFIIVTHYQRI 226
Query: 352 LDNVCNEIIH 361
LD + + +H
Sbjct: 227 LDYIKPDYVH 236
>3rj1_B Mediator of RNA polymerase II transcription subun; RNA polymeras
II, POL II, head module, head, regulator, helical
bundle; 4.30A {Saccharomyces cerevisiae}
Length = 583
Score = 30.7 bits (68), Expect = 1.3
Identities = 11/94 (11%), Positives = 30/94 (31%), Gaps = 7/94 (7%)
Query: 9 EEDKKQEIKPVKEEKISKKSKKKEKKDLLDEILSAPSKETPKVDDIPVPASDEVPNKEEV 68
E++ + EI ++ S S + + + ++ D +
Sbjct: 24 EKELQNEI----KQLGSDSSDGHNSEKKDTDGADENVQIGEDFMEVDYEDKDNPVDSRNE 79
Query: 69 EPEVAAPPQVKEDTKASKDKKLTHKEKKKMKKDM 102
+T + + +T ++ K ++DM
Sbjct: 80 TDH---KTNENGETDDNIETVMTQEQFVKRRRDM 110
>2kwb_A TCTP, translationally-controlled tumor protein homolog; structural
genomics, northeast structural genomics consortiu PSI-2;
NMR {Caenorhabditis elegans} PDB: 2loy_A
Length = 189
Score = 30.0 bits (67), Expect = 1.5
Identities = 9/67 (13%), Positives = 25/67 (37%), Gaps = 6/67 (8%)
Query: 361 HLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVL 420
L + Y + + K + + + M++ + + + KK+ + +L
Sbjct: 75 KLVEMNCYEDASMFKAYIKKFMKNVIDHMEKNNRDKADVDAF------KKKIQGWVVSLL 128
Query: 421 TRKQEKN 427
+ + KN
Sbjct: 129 AKDRFKN 135
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Length = 347
Score = 29.9 bits (68), Expect = 2.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 163 VNANLLIANGRRYGLVGPNGHGKTTLLRHIA 193
++ L G+R G+ +G GK+TLL I
Sbjct: 62 IDGLLTCGIGQRIGIFAGSGVGKSTLLGMIC 92
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z
3o58_V 3o5h_V 3u5e_W 3u5i_W 1s1i_S 2x7n_D
Length = 155
Score = 28.9 bits (64), Expect = 2.3
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 25 SKKSKKKEKKDLLDEILSAPSKETPKVD-DIPVPASDEVPNKEEVEPEVAAPPQVKEDTK 83
+ +K KK + +E+ S++T K I + D + + ++PEV +E K
Sbjct: 52 TVLFRKHHKKGITEEVAKKRSRKTVKAQRPITGASLDLIKERRSLKPEVRKA-NREEKLK 110
Query: 84 ASKDKKLTHKEKKKMKKDMEFQKQVETITKKGGQG 118
A+K+KK K +K +K Q +K+ +G
Sbjct: 111 ANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKG 145
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2;
I-BAR, protein binding; 2.25A {Mus musculus}
Length = 222
Score = 29.4 bits (65), Expect = 2.4
Identities = 10/91 (10%), Positives = 33/91 (36%), Gaps = 3/91 (3%)
Query: 344 IVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELK 403
+ S + + +++ ++ + Y + + R EK EL
Sbjct: 87 LNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSCQHYEIEYRHRAANLEKCMS---ELW 143
Query: 404 AHGQSKKQAEKKTKEVLTRKQEKNKSKLQKA 434
+ + + ++ KE + R + ++ + ++
Sbjct: 144 RMERKRDKNAREMKESVNRLHAQMQAFVSES 174
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A*
1us8_A*
Length = 149
Score = 28.9 bits (65), Expect = 2.4
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 176 GLVGPNGHGKTTLL 189
++G NG GK++LL
Sbjct: 27 LIIGQNGSGKSSLL 40
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI,
protein structure initiative, midwest center for struc
genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP:
a.4.1.9 a.121.1.1
Length = 180
Score = 29.2 bits (66), Expect = 2.6
Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 6/55 (10%)
Query: 241 EAADFSSEQQEQLKEIYEELKAIGADSAEPR--ARRILA----GLGFSRAMQDRA 289
E A +E L E + A+S E A L GL +RA+
Sbjct: 112 EVARLPEGFREVLSRHVEIMVTSLAESPEETDVALADLVLMIGGLALARALGPGE 166
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A
motif, P-loop, signature motif,
replication/recombination complex; HET: DNA; 1.61A
{Deinococcus radiodurans}
Length = 359
Score = 29.5 bits (67), Expect = 2.7
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 9/29 (31%)
Query: 177 LVGPNGHGKTTLL---------RHIASRD 196
+ G NG GKT LL + A R
Sbjct: 31 IYGENGAGKTNLLEAAYLALTGQTDAPRI 59
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP
binding, structure function project, S2F, unknown
function; 2.00A {Escherichia coli} SCOP: c.37.1.10
d.237.1.1
Length = 318
Score = 29.5 bits (67), Expect = 2.8
Identities = 10/11 (90%), Positives = 10/11 (90%)
Query: 182 GHGKTTLLRHI 192
G GKTTLLRHI
Sbjct: 14 GAGKTTLLRHI 24
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 29.3 bits (65), Expect = 2.8
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 3/86 (3%)
Query: 178 VGPNGHGKTTLLRHIAS--RDLKVPPNIDI-LYCEQEVVADDLTAVESVLKADVKRTELL 234
VG G GKTTL D +++ ++ + E V ++ R
Sbjct: 20 VGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYG 79
Query: 235 AECAKLEAADFSSEQQEQLKEIYEEL 260
A +E+ D E+ + L
Sbjct: 80 PNGAIVESYDRLMEKFNEYLNKILRL 105
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4,
structural genomics, ubiquitin biology, structural
genomics consortium, SGC; 1.25A {Homo sapiens}
Length = 127
Score = 28.2 bits (63), Expect = 2.9
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 264 GADSAEPRARRILAGLGFSRAMQDRATKNFSGG---WRMRV 301
G DS +A +IL L ++ + ++ GG W ++
Sbjct: 82 GNDSQ--KAVKILQSLSAAQELDPLTVRDVVGGLMAWAAKI 120
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 29.8 bits (67), Expect = 3.0
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 177 LVGPNGHGKTTLLRHIASR 195
L GP G GKT + R +A+
Sbjct: 243 LYGPPGTGKTLIARAVANE 261
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 29.3 bits (65), Expect = 3.0
Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 4/104 (3%)
Query: 177 LVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAE 236
LVG G GK+T+ + + + V D L V V + L
Sbjct: 29 LVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRL--KPMVNL--VDSLKTLQP 84
Query: 237 CAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLG 280
E + ++ ++++ + A ++ + G
Sbjct: 85 NKVAEMIENQGLFKDHVEDVNFQPVKYSALTSNNEECTAVVARG 128
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET:
BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Length = 341
Score = 29.4 bits (65), Expect = 3.3
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 179 GPNGHGKTTLLRHIASRDLKVPPNIDILY 207
G G GKTT P I ++
Sbjct: 19 GAYGIGKTTAAEEFLHHFAITPNRILLIG 47
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266,
NESG, PAR240, structural genomics, PSI-2; HET: FAD;
1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2
d.16.1.2 PDB: 2rgj_A*
Length = 410
Score = 29.2 bits (66), Expect = 3.3
Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 12/73 (16%)
Query: 255 EIYE---ELKAIGAD-SAEPRARRILAGLGFSRAMQDRATK-------NFSGGWRMRVSL 303
+ E E++ +G + +P A LA LG A+ A + SG
Sbjct: 32 TLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSGATVWSEPR 91
Query: 304 A-RALYIEPTLLL 315
A P +
Sbjct: 92 GVEAGNAYPQYSI 104
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase,
phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus
musculus}
Length = 302
Score = 29.3 bits (65), Expect = 3.7
Identities = 15/96 (15%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Query: 378 KKMYAQKSKERMKEFEKQEKRIKEL--KAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKAD 435
K+ + E +K FE+Q + ++ + + +++ +K + + E+ KS++ +
Sbjct: 51 KRTAIEAFNETIKIFEEQGQTQEKCSKEYLERFRREGNEKEMQRILLNSERLKSRIAEIH 110
Query: 436 EDQGPTELIQKPREYVVKFSFPDPPPLQPPILGLHN 471
E + E + + + L+P ++ L
Sbjct: 111 ESRTKLEQDLRAQASDNREIDKRMNSLKPDLMQLRK 146
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta
structure, hydrolase; HET: ADP; 2.40A {Salmonella
typhimurium}
Length = 438
Score = 29.2 bits (66), Expect = 3.9
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 163 VNANLLIANGRRYGLVGPNGHGKTTLLRHIA 193
+NA L + G+R GL +G GK+ LL +A
Sbjct: 148 INALLTVGRGQRMGLFAGSGVGKSVLLGMMA 178
>2yk0_A Erythrocyte membrane protein 1; adhesin, pfemp1; 2.80A {Plasmodium
falciparum}
Length = 790
Score = 29.5 bits (66), Expect = 4.0
Identities = 11/86 (12%), Positives = 23/86 (26%), Gaps = 3/86 (3%)
Query: 20 KEEKISKKSKKKEKKDLLDEILSAPSKETPKVDDIPVPASDEVPNKEEVEPEVAAPPQVK 79
+ + K + K E K DE P + +P P V+
Sbjct: 705 ELKDKIVSCKNQHKATKGKECCDKLPKIADGDTSDDEEQEDEAPAPPKPKPPSTPNPCVR 764
Query: 80 EDTKASKD---KKLTHKEKKKMKKDM 102
+D + + + + +
Sbjct: 765 KDQSGTHIVSVEDVAEWMQGVTHDRV 790
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 28.5 bits (63), Expect = 4.7
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 173 RRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCE 209
R L GP G GKTTL+ + +D Y E
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTE 38
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 29.1 bits (65), Expect = 5.0
Identities = 15/120 (12%), Positives = 31/120 (25%), Gaps = 4/120 (3%)
Query: 330 WLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERM 389
D + H + + I++ +QK + F M A S +
Sbjct: 492 ETDEKKLSAAENQQAFLHPMR-IQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAA 550
Query: 390 KEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPRE 449
K + K L+ +K K + N+ + + +
Sbjct: 551 KAY---YATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSS 607
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 28.0 bits (63), Expect = 5.7
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 175 YGLVGPNGHGKTTLL 189
++G NG GK++LL
Sbjct: 26 NLIIGQNGSGKSSLL 40
>2kjq_A DNAA-related protein; solution structure, NESG, structural
genomics, PSI-2, protei structure initiative; NMR
{Neisseria meningitidis serogroup B}
Length = 149
Score = 27.6 bits (62), Expect = 5.8
Identities = 10/46 (21%), Positives = 18/46 (39%)
Query: 179 GPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224
G G GK+ LL+ ++ L+ N + + D E +
Sbjct: 43 GEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLTDAAFEAEYLA 88
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2
function project, S2F, unknown function; HET: ADP; 1.70A
{Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Length = 158
Score = 27.6 bits (62), Expect = 5.9
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 165 ANLLIANGRRYG----LVGPNGHGKTTLLRHIASRDLKVPPNI 203
A +L+ L G G GKTTL R + + + N+
Sbjct: 22 AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGML-QGIGHQGNV 63
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 27.8 bits (61), Expect = 5.9
Identities = 8/77 (10%), Positives = 27/77 (35%)
Query: 377 FKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADE 436
+ S E + + + K+ +A ++ +KK ++ ++ ++
Sbjct: 80 VARAIVGISLEEINRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAA 139
Query: 437 DQGPTELIQKPREYVVK 453
+ T+ ++P
Sbjct: 140 KKAETKKTKQPVGAKGG 156
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 28.0 bits (63), Expect = 7.4
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 136 GQLAALENAVDIKVENFSISAKGNDLFVNAN--LLIANG-RRYGLVGPNGHGKTTLLRHI 192
G + + + + I N + N LL +G + +G G GKT L+ +
Sbjct: 1 GAMGGMHLVGVLDIAK-DILKA-NKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKL 58
Query: 193 ASRDLK 198
+LK
Sbjct: 59 I-DNLK 63
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 28.0 bits (62), Expect = 7.6
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 8/48 (16%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQE 211
N+N I + G GK+ + + R+ + I+ E+E
Sbjct: 35 NSNWTI--------LAKPGAGKSFTAKMLLLREYMQGSRVIIIDPERE 74
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 28.6 bits (65), Expect = 7.6
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
Query: 270 PRARRILA-----GLGFSRAMQDRATKNFSGGWRMRVSLARALYIEP---TLLLLDEPT 320
P +R L GLG+ + Q T SGG R+ LA L TL +LDEPT
Sbjct: 780 PSIKRTLQVLHDVGLGYVKLGQPATT--LSGGEAQRIKLASELRKRDTGRTLYILDEPT 836
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently
linked FAD, C4A-adduct, flavoprotein, oxidoreductase;
HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A*
3ljp_A*
Length = 546
Score = 28.3 bits (64), Expect = 7.6
Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 11/67 (16%)
Query: 167 LLIANGRRYGLVGPNGHGKT---TLLR-------HIASRDLKVPPNIDILYCEQEVVADD 216
N R+G +G + + + SRD + P +D Y D
Sbjct: 356 PFDMNTLRHGYPTT-ENGFSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDM 414
Query: 217 LTAVESV 223
V +
Sbjct: 415 RVMVAGI 421
>3r90_A Malignant T cell-amplified sequence 1; structural genomics
consortium, surface entropy reduction, S binding
protein; 1.70A {Homo sapiens}
Length = 188
Score = 27.6 bits (61), Expect = 7.8
Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 9/55 (16%)
Query: 17 KPVKEEKISKKS--KKKEKKDLLDEILSAPSKETPKVDDIPVPASDEVPNKEEVE 69
K ++E +S K K + ++++ P ++ I +P K+ V+
Sbjct: 4 KFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQI-------MPKKDPVK 51
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 28.1 bits (63), Expect = 8.0
Identities = 11/82 (13%), Positives = 27/82 (32%), Gaps = 2/82 (2%)
Query: 177 LVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAE 236
L+G G GK+ L + +A +L ++ + +++ +++V +R
Sbjct: 65 LIGEPGTGKSMLGQAMA--ELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIVEKYR 122
Query: 237 CAKLEAADFSSEQQEQLKEIYE 258
S +
Sbjct: 123 EKAKSQESVKSSNMRLKSTVLV 144
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 28.2 bits (62), Expect = 8.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 171 NGRRYGLVGPNGHGKTTLLRHIASRDLK 198
G R +VG + GKT+L R + S LK
Sbjct: 137 EGPRVVIVGGSQTGKTSLSRTLCSYALK 164
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Z
Length = 162
Score = 27.3 bits (60), Expect = 8.3
Identities = 10/73 (13%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 377 FKKMYAQKSKERMKEFEKQ---------EKRIKELKAHGQSKKQAEKKTKEVLTRKQEKN 427
+ + + E +++ + E ++E+K + K +K K + + Q+
Sbjct: 81 YSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVAKSQKTQ 140
Query: 428 KSKLQKADEDQGP 440
+GP
Sbjct: 141 SKGGATQRGAKGP 153
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 28.3 bits (64), Expect = 8.8
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 22/65 (33%)
Query: 270 PRARRILA-----GLGFSRAMQDRATKNFSGGWRMRVSLA---------RALYIEPTLLL 315
P+ +R L GLG+ + Q T SGG RV LA R LYI
Sbjct: 518 PKIKRKLETLYDVGLGYMKLGQPATT--LSGGEAQRVKLAAELHRRSNGRTLYI------ 569
Query: 316 LDEPT 320
LDEPT
Sbjct: 570 LDEPT 574
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 27.7 bits (61), Expect = 9.1
Identities = 5/40 (12%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 379 KMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKE 418
+Y + ++R+KE K + ++
Sbjct: 217 GLY-SLIQRSKCGPVGSDERVKEFKQSLIKYMETQRSYTA 255
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 27.5 bits (61), Expect = 9.2
Identities = 36/240 (15%), Positives = 67/240 (27%), Gaps = 37/240 (15%)
Query: 172 GRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRT 231
G L G G GKTT + + ++ +T E
Sbjct: 30 GTTVLLTGGTGTGKTTFAAQFIYKGAE-EYGEPGVF---------VTLEERA-------R 72
Query: 232 ELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATK 291
+L E A E++ ++ + +G S E + R K
Sbjct: 73 DLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVK 132
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVI-WLDNYLQGWKKTLLIVSHDQS 350
+ A+ L I+ + + V+ L+ L T ++ +
Sbjct: 133 AIN---------AKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPD 183
Query: 351 F----------LDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIK 400
+ + +I LD Q+ Y + +KM + + FE I
Sbjct: 184 PQHGKLSRYGIEEFIARGVIVLDLQEKNIELKRYVLIRKMRETRHSMKKYPFEIGPNGIV 243
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 27.6 bits (62), Expect = 9.9
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 159 NDLFVNAN--LLIANG-RRYGLVGPNGHGKTTLL 189
N N L +G ++G G GKT L+
Sbjct: 14 NKRLAEKNREALRESGTVAVNIMGAIGSGKTLLI 47
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.131 0.368
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,105,477
Number of extensions: 503727
Number of successful extensions: 1974
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1896
Number of HSP's successfully gapped: 268
Length of query: 548
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 450
Effective length of database: 3,965,535
Effective search space: 1784490750
Effective search space used: 1784490750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.6 bits)