RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11936
(548 letters)
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 107 bits (268), Expect = 5e-27
Identities = 48/225 (21%), Positives = 93/225 (41%), Gaps = 14/225 (6%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
+++ + +L + +G L+GP+G GKTT LR IA L+ P I
Sbjct: 4 VRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG--LEEPSRGQIY 61
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD 266
++ V + + + ++ + L + +L+ +
Sbjct: 62 IGDKLVADPEK---GIFVPPKDRDIAMVFQSYALYPHMTVYDNIAF----PLKLRKVPRQ 114
Query: 267 SAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN 326
+ R R + LG + + +R + SGG R RV+L RA+ +P + L+DEP ++LD
Sbjct: 115 EIDQRVREVAELLGLTELL-NRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK 173
Query: 327 AVIWLDNY----LQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
+ + + T + V+HDQ + + I +++ L
Sbjct: 174 LRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVL 218
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 104 bits (262), Expect = 3e-26
Identities = 57/227 (25%), Positives = 101/227 (44%), Gaps = 20/227 (8%)
Query: 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNID 204
V++K+EN + NL I +G L+GP+G GKTT LR IA L+ P
Sbjct: 5 VEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG--LEEPTEGR 62
Query: 205 ILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG 264
I + +++ + L + ++ + A + + ++K
Sbjct: 63 IYFGDRD---------VTYLPPKDRNISMVFQ----SYAVWPHMTVYENIAFPLKIKKFP 109
Query: 265 ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
D + R R L + +R SGG R RV++ARA+ +EP +LL+DEP ++LD
Sbjct: 110 KDEIDKRVRWAAELLQIEELL-NRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 168
Query: 325 LNAVIWLDNYLQ----GWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
+ + ++ K T + V+HDQ + + I +++ +L
Sbjct: 169 AKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQL 215
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 102 bits (256), Expect = 3e-25
Identities = 59/227 (25%), Positives = 101/227 (44%), Gaps = 8/227 (3%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
+ V + G+++ +L G ++G +G GK+T LR I L+ P I+
Sbjct: 3 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINF--LEKPSEGAII 60
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKL--EAADFSSEQ-QEQLKEIYEELKAI 263
Q + + + + L + +S E + E ++ +
Sbjct: 61 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL 120
Query: 264 GADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHL 323
A RA + LA +G Q + + SGG + RVS+ARAL +EP +LL DEPT+ L
Sbjct: 121 SKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSAL 180
Query: 324 DLNAVIWLDNYLQGWK---KTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
D V + +Q KT+++V+H+ F +V + +I L Q K+
Sbjct: 181 DPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 227
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 101 bits (252), Expect = 9e-25
Identities = 41/237 (17%), Positives = 85/237 (35%), Gaps = 29/237 (12%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA------------- 193
++ EN ++ + G ++GPNG GK+TL+ I
Sbjct: 5 LRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFE 64
Query: 194 SRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQL 253
++D+ ++ + ++ + + + + F + +
Sbjct: 65 NKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKE 124
Query: 254 KEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTL 313
+E+ E +A +IL L S + DR SGG V + RAL P +
Sbjct: 125 EEMVE------------KAFKILEFLKLSH-LYDRKAGELSGGQMKLVEIGRALMTNPKM 171
Query: 314 LLLDEPTNHLDLNAVIWLDNYLQGWKK---TLLIVSHDQSFLDNVCNEIIHLDQQKL 367
+++DEP + + N++ K T LI+ H + N + + + ++
Sbjct: 172 IVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQI 228
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 97.6 bits (243), Expect = 1e-23
Identities = 52/233 (22%), Positives = 98/233 (42%), Gaps = 23/233 (9%)
Query: 147 IKVENFSISAKGNDLFVNA----NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN 202
IK++N + + K + + A NL I G ++GP+G GK+T+L I L P
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC--LDKPTE 59
Query: 203 IDILYCEQEVVADDLTAVESVLKADV----KRTELLAECAKLEAADFSSEQQEQLKEIYE 258
++ + D + + + + ++ L+ ++ + +L I++
Sbjct: 60 GEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIP--------LLTALENVELPLIFK 111
Query: 259 ELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDE 318
A+ + RA L + SGG + RV++ARAL P ++L D+
Sbjct: 112 YRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQ 171
Query: 319 PTNHLDLNAVIWLDNYLQG----WKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
PT LD + L+ KT+++V+HD + II+L ++
Sbjct: 172 PTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEV 223
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 97.3 bits (242), Expect = 1e-23
Identities = 57/225 (25%), Positives = 102/225 (45%), Gaps = 20/225 (8%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
++++N + + + + NL I G VGP+G GK+TLLR IA L+ + D+
Sbjct: 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG--LETITSGDLF 58
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD 266
E+ + +D E + + L + E F + KE+ +
Sbjct: 59 IGEKRM--NDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQ------- 109
Query: 267 SAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN 326
R ++ L + + DR K SGG R RV++ R L EP++ LLDEP ++LD
Sbjct: 110 ----RVNQVAEVLQLAHLL-DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA 164
Query: 327 AVIWLDNY----LQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
+ + + +T++ V+HDQ + ++I+ LD ++
Sbjct: 165 LRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRV 209
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 98.0 bits (244), Expect = 1e-23
Identities = 50/233 (21%), Positives = 90/233 (38%), Gaps = 28/233 (12%)
Query: 146 DIKVENFSISAKGNDLFV--NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI 203
D++ N + + G ++ N NL I G+ LVG +G GK+T+ I
Sbjct: 13 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITR--FYDIDEG 70
Query: 204 DILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI 263
IL ++ + L + A + Y +
Sbjct: 71 HILMDGHDL-------------REYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEY 117
Query: 264 GADSAEPRARRILAGLGFSRAMQD-------RATKNFSGGWRMRVSLARALYIEPTLLLL 316
+ E A R+ + F M + SGG R R+++ARAL + +L+L
Sbjct: 118 SREQIE-EAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILIL 176
Query: 317 DEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHDQSFLDNVCNEIIHLDQQKL 367
DE T+ LD + + L +K T L+++H S ++ +EI+ ++ +
Sbjct: 177 DEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQ-ADEIVVVEDGII 228
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 97.2 bits (242), Expect = 2e-23
Identities = 40/224 (17%), Positives = 81/224 (36%), Gaps = 13/224 (5%)
Query: 147 IKVENFSIS-AKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDI 205
+ + + + + + GP+G GK+T+ + P +I
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLER--FYQPTAGEI 59
Query: 206 LYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA 265
Q + L S + V + + E + E +++++ L A
Sbjct: 60 TIDGQPIDNISLENWRSQI-GFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFA 118
Query: 266 DSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL 325
S + SGG R R+++ARA P +L+LDE T LD
Sbjct: 119 RS------FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDS 172
Query: 326 NAVIWLDNYLQGWKK--TLLIVSHDQSFLDNVCNEIIHLDQQKL 367
+ + L K T L+++H S + + ++I +++ ++
Sbjct: 173 ESESMVQKALDSLMKGRTTLVIAHRLSTIVD-ADKIYFIEKGQI 215
Score = 26.4 bits (58), Expect = 9.4
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 519 ILGLHNVTFAYEGMKPLLVDV 539
+L +V FAY+ + +L D+
Sbjct: 1 MLSARHVDFAYDDSEQILRDI 21
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 96.6 bits (240), Expect = 3e-23
Identities = 53/224 (23%), Positives = 93/224 (41%), Gaps = 18/224 (8%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
+ V++ ++ + I G +GL+GPNG GKTT LR I++ L P + +
Sbjct: 3 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIST--LIKPSSGIVT 60
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD 266
+ VV + K L E A + + Q + A +
Sbjct: 61 VFGKNVVEEP--------HEVRKLISYLPEEAGA----YRNMQGIEYLRFVAGFYASSSS 108
Query: 267 SAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN 326
E R G ++DR +S G ++ +ARAL + P L +LDEPT+ LD+
Sbjct: 109 EIEEMVERATEIAGLGEKIKDRV-STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVL 167
Query: 327 AVIWLDNYLQGWKK---TLLIVSHDQSFLDNVCNEIIHLDQQKL 367
+ L+ + T+L+ SH+ ++ +C+ I + +
Sbjct: 168 NAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTI 211
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 96.5 bits (240), Expect = 3e-23
Identities = 42/224 (18%), Positives = 80/224 (35%), Gaps = 16/224 (7%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
++V++ + +L + G+ L+G NG GKTT L IA L I+
Sbjct: 7 LEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIA--GLVRAQKGKII 64
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD 266
+ Q++ + + A V E E + +
Sbjct: 65 FNGQDITNKPAHVINRMGIALVP-----------EGRRIFPELTVYENLMMGAYNRKDKE 113
Query: 267 SAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN 326
+ I + + + SGG + +++ RAL P LL++DEP+ L
Sbjct: 114 GIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPI 173
Query: 327 AVIWLDNYLQGWKK---TLLIVSHDQSFLDNVCNEIIHLDQQKL 367
V + +Q + T+L+V + V + L+ ++
Sbjct: 174 LVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQI 217
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 96.4 bits (240), Expect = 4e-23
Identities = 50/226 (22%), Positives = 88/226 (38%), Gaps = 15/226 (6%)
Query: 146 DIKVENFSISAKGNDLFV--NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI 203
I +++ S N+ + + NL I G VG +G GK+TL+ I +
Sbjct: 16 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPR--FYDVTSG 73
Query: 204 DILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI 263
IL + ++ + + V++ +L E +E+ E K
Sbjct: 74 QILIDGHNIKDFLTGSLRNQI-GLVQQDNILFSDTVKENILLGRPTATD-EEVVEAAKMA 131
Query: 264 GADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHL 323
A + G SGG + R+S+AR P +L+LDE T+ L
Sbjct: 132 NAHD---FIMNLPQGY---DTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSAL 185
Query: 324 DLNAVIWLDNYLQGWKK--TLLIVSHDQSFLDNVCNEIIHLDQQKL 367
DL + + L K T LIV+H S + + ++I+ ++ +
Sbjct: 186 DLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVIENGHI 230
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 95.7 bits (238), Expect = 5e-23
Identities = 54/229 (23%), Positives = 98/229 (42%), Gaps = 19/229 (8%)
Query: 147 IKVENFSISAKGNDLFVNA----NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN 202
IK+ N + + A +L + G+ YG++G +G GK+TL+R + L+ P
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL--LERPTE 59
Query: 203 IDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA 262
+L Q +LT + +R + + S + EL
Sbjct: 60 GSVLVDGQ-----ELTTLSESELTKARRQ--IGMIFQHFNLLSSRTVFGNVALPL-ELDN 111
Query: 263 IGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNH 322
D + R +L+ +G D N SGG + RV++ARAL P +LL DE T+
Sbjct: 112 TPKDEVKRRVTELLSLVGLGDKH-DSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 323 LD----LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
LD + + L + + T+L+++H+ + +C+ + + +L
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 219
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 94.2 bits (234), Expect = 4e-22
Identities = 53/294 (18%), Positives = 101/294 (34%), Gaps = 51/294 (17%)
Query: 128 ISQMEKTGGQLAALENAVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTT 187
+ +++++ G + ++ + + GN + N NL I G + G G GKT+
Sbjct: 20 LEKVQQSNGDRKHSSDENNVSFSHLCLV--GNPVLKNINLNIEKGEMLAITGSTGSGKTS 77
Query: 188 LLRHIASRDLK-----VPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEA 242
LL I +L+ + + + +C Q T E+++ K
Sbjct: 78 LLMLIL-GELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQ 136
Query: 243 ADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302
+ + E + SGG R R+S
Sbjct: 137 LQ---QDITKFAEQDN-------------------------TVLGEGGVTLSGGQRARIS 168
Query: 303 LARALYIEPTLLLLDEPTNHLDL---NAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEI 359
LARA+Y + L LLD P +LD+ V KT ++V+ L ++I
Sbjct: 169 LARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRK-ADKI 227
Query: 360 IHLDQ---------QKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKA 404
+ L Q +L + ++ K+ + ++ E + + L+
Sbjct: 228 LILHQGSSYFYGTFSELQSLRPDF--SSKLMGYDTFDQFTEERRSSILTETLRR 279
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 90.7 bits (225), Expect = 3e-21
Identities = 51/226 (22%), Positives = 89/226 (39%), Gaps = 15/226 (6%)
Query: 146 DIKVENFSISAKGNDLFV--NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI 203
DI N K + + N NL I G G+VG +G GK+TL + I +P N
Sbjct: 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQR--FYIPENG 58
Query: 204 DILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI 263
+L ++ D + + ++ LL + + + +L
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 264 GADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHL 323
I + SGG R R+++ARAL P +L+ DE T+ L
Sbjct: 119 --------HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSAL 170
Query: 324 DLNAVIWLDNYLQGWKK--TLLIVSHDQSFLDNVCNEIIHLDQQKL 367
D + + + K T++I++H S + N + II +++ K+
Sbjct: 171 DYESEHVIMRNMHKICKGRTVIIIAHRLSTVKN-ADRIIVMEKGKI 215
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 89.6 bits (222), Expect = 1e-20
Identities = 53/239 (22%), Positives = 99/239 (41%), Gaps = 17/239 (7%)
Query: 136 GQLAALENAVDIKVENFSIS-AKGNDLFV--NANLLIANGRRYGLVGPNGHGKTTLLRHI 192
G L L ++ ++ S + D+ V + G LVGPNG GK+T+ +
Sbjct: 1 GLLTPLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALL 60
Query: 193 ASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQ 252
+ L P +L + + + + + A V + + + E + Q+
Sbjct: 61 QN--LYQPTGGQLLLDGKPLPQYEHRYLHRQV-AAVGQEPQVFGRSLQENIAYGLTQKPT 117
Query: 253 LKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPT 312
++EI GA I D A SGG R V+LARAL +P
Sbjct: 118 MEEITAAAVKSGAH------SFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPC 171
Query: 313 LLLLDEPTNHLDLNAVIW----LDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
+L+LD+ T+ LD N+ + L + + +++L+++ S ++ + I+ L+ +
Sbjct: 172 VLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQ-ADHILFLEGGAI 229
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 88.2 bits (218), Expect = 2e-20
Identities = 60/229 (26%), Positives = 104/229 (45%), Gaps = 17/229 (7%)
Query: 145 VDIKVENFSISAKGNDLFV--NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN 202
V I V+N S K + N N+ I NG R+G++GP+G GKTT +R IA L VP
Sbjct: 2 VRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG--LDVPST 59
Query: 203 IDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA 262
++ + ++ V ++ + ++ + ++ ++ + L + E
Sbjct: 60 GELYFDDRLVASNG----KLIVPPEDRKIGMVFQTWALYPNLTAFEN----IAFPLTNMK 111
Query: 263 IGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNH 322
+ + R + L + + + SG + RV+LARAL +P+LLLLDEP ++
Sbjct: 112 MSKEEIRKRVEEVAKILDIHHVL-NHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 323 LDLNAVIWLDNY----LQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
LD TLL+VSHD + + + + + L + KL
Sbjct: 171 LDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKL 219
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 87.3 bits (216), Expect = 4e-20
Identities = 51/232 (21%), Positives = 81/232 (34%), Gaps = 36/232 (15%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
+++++ + S + L + + G LVGPNG GK+TLL +A I
Sbjct: 4 MQLQDVAESTRLGPL----SGEVRAGEILHLVGPNGAGKSTLLARMAGM---TSGKGSIQ 56
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD 266
+ Q + A T + A A + ++ L D
Sbjct: 57 FAGQPLEAWSATKL-----------------ALHRAYLSQQQTPPFATPVWHYLTLHQHD 99
Query: 267 -SAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALY-------IEPTLLLLDE 318
+ + L + R+T SGG RV LA + LLLLDE
Sbjct: 100 KTRTELLNDVAGALALDDKL-GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDE 158
Query: 319 PTNHLDLNAVIWLDNYLQGWKK---TLLIVSHDQSFLDNVCNEIIHLDQQKL 367
P N LD+ LD L + +++ SHD + + L K+
Sbjct: 159 PMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKM 210
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 84.2 bits (208), Expect = 2e-19
Identities = 39/219 (17%), Positives = 71/219 (32%), Gaps = 29/219 (13%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
+++ + S+ + + I G GPNG GKTTLL+ I++ P +I+
Sbjct: 3 LEIRDLSVGY-DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTIST--YLKPLKGEII 59
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD 266
Y VK + S E + G
Sbjct: 60 YNGVP-------------ITKVKGKIFFLPEEIIVPRKISVEDY-----LKAVASLYGVK 101
Query: 267 SAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN 326
+ L + + S G RV LA L + + +LD+P +D +
Sbjct: 102 VNKNEIMDALESVEVLD--LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDED 159
Query: 327 AV--IW--LDNYLQGWKKTLLIVSHDQSFLDNVCNEIIH 361
+ + + L+ ++ + S+ D E +H
Sbjct: 160 SKHKVLKSILEILKEKGIVIISSREELSYCDVN--ENLH 196
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 75.9 bits (186), Expect = 3e-16
Identities = 56/225 (24%), Positives = 88/225 (39%), Gaps = 24/225 (10%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
I++E+ S K L N +L + +G + ++GP G GKT L IA VP + IL
Sbjct: 2 IEIESLSRKWKNFSLD-NLSLKVESGEYFVILGPTGAGKTLFLELIAG--FHVPDSGRIL 58
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD 266
++ + L + + + L + E + +
Sbjct: 59 LDGKD---------VTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD----- 104
Query: 267 SAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN 326
R L + DR SGG + RV+LARAL P +LLLDEP + LD
Sbjct: 105 --PKRVLDTARDLKI-EHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161
Query: 327 AVIWLDNY----LQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
+ K T+L ++HDQ+ + + I + KL
Sbjct: 162 TQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKL 206
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 71.2 bits (174), Expect = 1e-14
Identities = 47/213 (22%), Positives = 85/213 (39%), Gaps = 23/213 (10%)
Query: 159 NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLT 218
+ +N + + L+GP G GK+ L IA + P ++ ++
Sbjct: 12 GNFRLNVDFEM-GRDYCVLLGPTGAGKSVFLELIAG--IVKPDRGEVRLNGADI------ 62
Query: 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAG 278
+ L + + + + L L+ + + R R +
Sbjct: 63 ---TPLPPERRGIGFVPQDYALFPHLSVYRNIA------YGLRNVERVERDRRVREMAEK 113
Query: 279 LGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD---LNAVIWLDNYL 335
LG + + DR SGG R RV+LARAL I+P LLLLDEP + +D ++ ++
Sbjct: 114 LGIAHLL-DRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFV 172
Query: 336 QGW-KKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
Q +L V+HD + +E+ + ++
Sbjct: 173 QREFDVPILHVTHDLIEAAMLADEVAVMLNGRI 205
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 70.6 bits (171), Expect = 5e-14
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Query: 285 MQDRATKNFSGGWRMRVSLARALYI------EPTLLLLDEPTNHLDLNAVIWLDNYLQGW 338
++R SGG R+ + LA L + E +LL+LDEPT +LD L ++ +
Sbjct: 194 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERY 253
Query: 339 KK---TLLIVSHDQSFLDNVCNEIIHLD 363
K +++VSHD+ D + +I +
Sbjct: 254 LKKIPQVILVSHDEELKD-AADHVIRIS 280
Score = 38.6 bits (88), Expect = 0.001
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 8/47 (17%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA 193
+ V+NF + + G ++G NG GK++LL I
Sbjct: 6 VTVKNFRS-------HSDTVVEFKEGI-NLIIGQNGSGKSSLLDAIL 44
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 67.2 bits (162), Expect = 1e-12
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK---TLLIVSHDQ 349
+ G R++++ L E +LL+LDEPT +LD L ++ + K +++VSHD+
Sbjct: 285 IALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE 344
Query: 350 SFLDNVCNEIIHLDQQ 365
D + +I + +
Sbjct: 345 ELKD-AADHVIRISLE 359
Score = 31.7 bits (70), Expect = 0.19
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 176 GLVGPNGHGKTTLLRHI 192
++G NG GK++LL I
Sbjct: 27 LIIGQNGSGKSSLLDAI 43
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 59.2 bits (142), Expect = 7e-11
Identities = 20/197 (10%), Positives = 41/197 (20%), Gaps = 42/197 (21%)
Query: 174 RYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTEL 233
+ + G G GKTTL++ I L I E
Sbjct: 2 KIIITGEPGVGKTTLVKKIV-ERLG-KRAIGFWTEEVRDP-------------------- 39
Query: 234 LAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNF 293
E K + ++ + +
Sbjct: 40 -----------------ETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEE 82
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDL--NAVIWLDNYLQGWKKTLLIVSHDQSF 351
+ + A ++++DE + + ++ +
Sbjct: 83 LAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDV 142
Query: 352 LDNVCNEIIHLDQQKLY 368
+ EI L L
Sbjct: 143 HP-LVKEIRRLPGAVLI 158
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 34.6 bits (78), Expect = 0.016
Identities = 27/158 (17%), Positives = 44/158 (27%), Gaps = 6/158 (3%)
Query: 173 RRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYC-EQEVVADDLTAVESVLKADVKRT 231
R L GP G GKTTL+ + +D Y E + L
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 232 ELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATK 291
+ + Q +E+L R +G G + D K
Sbjct: 62 SRVGLEPPPGKRECRVGQYVVDLTSFEQLAL-----PVLRNADCSSGPGQRVCVIDEIGK 116
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVI 329
++ + L T++L P A++
Sbjct: 117 MELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPLALV 154
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 34.8 bits (79), Expect = 0.019
Identities = 35/264 (13%), Positives = 81/264 (30%), Gaps = 16/264 (6%)
Query: 171 NGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKR 230
N R G+ G G GK+T L ++ + ++ + + + + +
Sbjct: 53 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLA 112
Query: 231 TELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRAT 290
A + ++ ++ +E+ +A G D + M D
Sbjct: 113 RAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETEVARMVDCFI 172
Query: 291 KNFSGGW--------RMRVSLARALYI---EPTLLLLDEPTNHLDLNAVIWLDNYLQGWK 339
G + + +A + I + H+ +A+ L W+
Sbjct: 173 SLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQ 232
Query: 340 KTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRI 399
+L S + +EI H + + + Q S E +++ + +E+ +
Sbjct: 233 PRVLTCS---ALEKRGIDEIWHAIIDFKTALTASGRLQQVRQQQ-SVEWLRK-QTEEEVL 287
Query: 400 KELKAHGQSKKQAEKKTKEVLTRK 423
L A+ + + V
Sbjct: 288 NHLFANEDFDRYYRQTLLAVKNNT 311
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 33.2 bits (76), Expect = 0.063
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 162 FVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDI 205
V+ A G + GL G G GKT L+ + + K +
Sbjct: 58 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSV 101
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 32.7 bits (73), Expect = 0.078
Identities = 17/97 (17%), Positives = 29/97 (29%), Gaps = 26/97 (26%)
Query: 176 GLVGPNGHGKTTLLRHI-----------------ASRDLKVPPNIDILYCEQEVVADDLT 218
VG G GKTTL ++L P+ID+ +
Sbjct: 4 VFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDV---------REFV 54
Query: 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKE 255
VE +++ + E F+ + L+
Sbjct: 55 TVEEIMREGYGPNGAIVESYDRLMEKFNEYLNKILRL 91
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 32.1 bits (72), Expect = 0.093
Identities = 7/42 (16%), Positives = 15/42 (35%)
Query: 175 YGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD 216
+ +VG GKTTL+ + ++ + +
Sbjct: 4 WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPA 45
>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1
ATP synthase {Spinach (Spinacia oleracea), chloroplast
[TaxId: 3562]}
Length = 276
Score = 32.6 bits (74), Expect = 0.095
Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 5/90 (5%)
Query: 163 VNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222
++A + + G+R ++G GKT + D + + C + ++V
Sbjct: 58 IDAMIPVGRGQRELIIGDRQTGKTAVA-----TDTILNQQGQNVICVYVAIGQKASSVAQ 112
Query: 223 VLKADVKRTELLAECAKLEAADFSSEQQEQ 252
V+ +R + E AD + Q
Sbjct: 113 VVTNFQERGAMEYTIVVAETADSPATLQYL 142
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 31.9 bits (71), Expect = 0.10
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 172 GRRYGLVGPNGHGKTTLLRHIASRDLKV 199
GR L GP+ GK+T++R + R +
Sbjct: 2 GRVVVLSGPSAVGKSTVVRCLRERIPNL 29
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 31.5 bits (70), Expect = 0.13
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 176 GLVGPNGHGKTTLLRHIASR 195
+G GKTTLL+ +
Sbjct: 6 AFAAWSGTGKTTLLKKLIPA 25
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 31.2 bits (69), Expect = 0.20
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 169 IANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYC 208
I + + +VG GK+TL I +++ + I
Sbjct: 5 ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTR 44
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 31.1 bits (69), Expect = 0.27
Identities = 15/98 (15%), Positives = 25/98 (25%), Gaps = 2/98 (2%)
Query: 169 IANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADV 228
G G GKT L+ + E+ L D
Sbjct: 23 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEES--RAQLLRNAYSWGMDF 80
Query: 229 KRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD 266
+ E + A S+ ++ L+ I E+
Sbjct: 81 EEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPA 118
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 30.7 bits (68), Expect = 0.32
Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 1/92 (1%)
Query: 169 IANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADV 228
+ GR + G +G GKT + + +E D + S D+
Sbjct: 23 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARS-FGWDL 81
Query: 229 KRTELLAECAKLEAADFSSEQQEQLKEIYEEL 260
+ + L+A+ Q+ L
Sbjct: 82 AKLVDEGKLFILDASPDPEGQEVVGGFDLSAL 113
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 30.9 bits (68), Expect = 0.38
Identities = 10/75 (13%), Positives = 24/75 (32%)
Query: 165 ANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224
L ++G GK+++++ + +D+ E+ + +
Sbjct: 22 EKLKGLRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQ 81
Query: 225 KADVKRTELLAECAK 239
K K + L K
Sbjct: 82 KEINKLVKRLPSLLK 96
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 30.2 bits (67), Expect = 0.46
Identities = 4/20 (20%), Positives = 11/20 (55%)
Query: 177 LVGPNGHGKTTLLRHIASRD 196
L+G +G G+ + + ++
Sbjct: 8 LLGAHGVGRRHIKNTLITKH 27
>d1e7ua4 d.144.1.4 (A:726-1094) Phoshoinositide 3-kinase (PI3K),
catalytic domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 369
Score = 30.4 bits (68), Expect = 0.50
Identities = 15/109 (13%), Positives = 31/109 (28%), Gaps = 7/109 (6%)
Query: 389 MKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKAD--EDQGPTELIQK 446
+ +F +Q + I L+ K + +V ++ + K KL+ +
Sbjct: 4 LHDFTQQVQVIDMLQKVTIDIKSLSAEKYDVSSQVISQLKQKLENLQNLNLPQSFRVPYD 63
Query: 447 PREYVVKFSFPDPPPLQ----PPILGLHNV-TFAYEGMKPLLMSKADED 490
P + P L A ++ K +D
Sbjct: 64 PGLKAGALVIEKCKVMASKKKPLWLEFKCADPTALSNETIGIIFKHGDD 112
>d2glza1 d.81.3.1 (A:3-151) FwdE-like protein DSY1837 (Dhaf_2201)
{Desulfitobacterium hafniense [TaxId: 49338]}
Length = 149
Score = 29.4 bits (66), Expect = 0.50
Identities = 6/53 (11%), Positives = 20/53 (37%)
Query: 7 HIEEDKKQEIKPVKEEKISKKSKKKEKKDLLDEILSAPSKETPKVDDIPVPAS 59
+ ++ ++ +S + ++ + + + +L+ D IP S
Sbjct: 95 TVSPAVLDHLETLRHPDLSPRERQNKVLEGVQYVLTLEESAFCHYDKIPGQLS 147
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 30.1 bits (66), Expect = 0.55
Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 1/89 (1%)
Query: 169 IANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADV 228
I G + G GKT + +A ++P + + + + T L A
Sbjct: 20 IETGSITEMFGEFRTGKTQICHTLAVT-CQLPIDRGGGEGKAMYIDTEGTFRPERLLAVA 78
Query: 229 KRTELLAECAKLEAADFSSEQQEQLKEIY 257
+R L A + + ++
Sbjct: 79 ERYGLSGSDVLDNVAYARAFNTDHQTQLL 107
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 29.5 bits (65), Expect = 0.58
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 171 NGRRYGLVGPNGHGKTTLLRHIASR 195
G L G G GK+T+ +A+
Sbjct: 3 GGNILLLSGHPGSGKSTIAEALANL 27
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 29.5 bits (65), Expect = 0.67
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 177 LVGPNGHGKTTLLRHIASRD 196
L GP+G GK+TLL+ +
Sbjct: 5 LSGPSGAGKSTLLKKLFQEH 24
>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl
transferase subunit alpha, AccA {Escherichia coli
[TaxId: 562]}
Length = 316
Score = 30.1 bits (67), Expect = 0.72
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 391 EFEKQ----EKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQK 446
+FE+ E +I L A + ++ + E + R +EK+ +K D G ++ Q
Sbjct: 4 DFEQPIAELEAKIDSLTAGSRQDEKLDINIDEEVHRLREKSVELTRKIFADLGAWQIAQL 63
Query: 447 PRE 449
R
Sbjct: 64 ARH 66
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 29.1 bits (65), Expect = 0.74
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 13/61 (21%)
Query: 163 VNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222
++ L+ G + G +G GK+ + R + +VADD +
Sbjct: 6 LHGVLVDVYGVGVLITGDSGIGKSETALELIKRGHR-------------LVADDNVEIRE 52
Query: 223 V 223
+
Sbjct: 53 I 53
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 30.1 bits (66), Expect = 0.76
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKT---LLIVSHDQSFLDN 354
A Y +LDE LD+ V + Y++ + +++S + +
Sbjct: 347 FAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEK 401
Score = 28.9 bits (63), Expect = 1.8
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 176 GLVGPNGHGKTTLL 189
++GPNG GK+ ++
Sbjct: 29 SIIGPNGSGKSNMM 42
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 29.7 bits (65), Expect = 0.76
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 169 IANGRRYGLVGPNGHGKTTLLRHIA 193
+ G L G GK+ L +A
Sbjct: 31 VETGSITELFGEFRTGKSQLCHTLA 55
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 29.3 bits (64), Expect = 0.77
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 172 GRRYGLVGPNGHGKTTLLRHIASRDLKV 199
G + + G GK++LL +A R+ +
Sbjct: 1 GMKVVIAGRPNAGKSSLLNALAGREAAI 28
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1
ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
Length = 285
Score = 29.8 bits (67), Expect = 0.81
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 163 VNANLLIANGRRYGLVGPNGHGKTTLL 189
V++ + I G+R ++G GKT++
Sbjct: 59 VDSLVPIGRGQRELIIGDRQTGKTSIA 85
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 29.1 bits (64), Expect = 0.92
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 177 LVGPNGHGKTTLLRHIASRD 196
+ GP+G GK+TLL+ + +
Sbjct: 6 ISGPSGTGKSTLLKKLFAEY 25
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 29.0 bits (64), Expect = 1.0
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 172 GRRYGLVGPNGHGKTTLLRHIASRD 196
G Y + P+G GK++L++ +
Sbjct: 2 GTLYIVSAPSGAGKSSLIQALLKTQ 26
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 29.3 bits (64), Expect = 1.0
Identities = 32/233 (13%), Positives = 62/233 (26%), Gaps = 11/233 (4%)
Query: 169 IANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADV 228
I + G G GKT L H + +++PP L + + T ++
Sbjct: 33 IETQAITEVFGEFGSGKTQLA-HTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIA 91
Query: 229 KRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDR 288
+ L + + + ++ + + R + + S R
Sbjct: 92 QNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLN-TDRPVKLLIVDSLTSHFR 150
Query: 289 ATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHD 348
+ G R + L N V + G
Sbjct: 151 SEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFG----DPTRPIG 206
Query: 349 QSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKE 401
L + ++ L KG + + + A E F EK I++
Sbjct: 207 GHILAHSATLRVY-----LRKGKGGKRIARLIDAPHLPEGEAVFSITEKGIED 254
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 28.9 bits (64), Expect = 1.1
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 4/27 (14%)
Query: 177 LVGPNGHGKTT----LLRHIASRDLKV 199
LVG G GKTT L + + +
Sbjct: 15 LVGLQGSGKTTTAAKLALYYKGKGRRP 41
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 28.9 bits (63), Expect = 1.1
Identities = 5/29 (17%), Positives = 9/29 (31%), Gaps = 3/29 (10%)
Query: 168 LIANGR---RYGLVGPNGHGKTTLLRHIA 193
GR + G G L+ ++
Sbjct: 17 SYQAGRGHHALLIQALPGMGDDALIYALS 45
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 29.3 bits (65), Expect = 1.1
Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 177 LVGPNGHGKTTLLRHIASRDLKVP 200
++GP G GKT + R +A + P
Sbjct: 54 MIGPTGVGKTEIARRLA-KLANAP 76
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 28.5 bits (62), Expect = 1.3
Identities = 10/75 (13%), Positives = 22/75 (29%), Gaps = 1/75 (1%)
Query: 171 NGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKR 230
+ Y L+G +G GK+ + +A + L + + +
Sbjct: 5 DHHIYVLMGVSGSGKSAVASEVAHQ-LHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPW 63
Query: 231 TELLAECAKLEAADF 245
+ L + A
Sbjct: 64 LQALNDAAFAMQRTN 78
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 28.8 bits (63), Expect = 1.4
Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 8/87 (9%)
Query: 177 LVGPNGHGKTTLLRHIASR--------DLKVPPNIDILYCEQEVVADDLTAVESVLKADV 228
LV P G GK+ L +A++ ++ P ++Y E + L A +
Sbjct: 34 LVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHL 93
Query: 229 KRTELLAECAKLEAADFSSEQQEQLKE 255
E A L +
Sbjct: 94 SAEERQAVADGLLIQPLIGSLPNIMAP 120
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 28.8 bits (63), Expect = 1.4
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 177 LVGPNGHGKTTLLRHIASR 195
+ G G G TT +
Sbjct: 6 VTGVPGVGSTTSSQLAMDN 24
>d1ozja_ d.164.1.1 (A:) SMAD MH1 domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 126
Score = 27.8 bits (62), Expect = 1.5
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 12 KKQEIKPVKEEKISKKS-----KKKEKKDLLDEILSAPSKETPKVDDIPVPASDEVP 63
KK E +EEK +K+ KK +K LDE+ A + + I +P S +
Sbjct: 13 KKGEQNG-QEEKWCEKAVKSLVKKLKKTGQLDELEKAITTQNVNTKCITIPRSLDGR 68
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho,
ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 28.8 bits (64), Expect = 1.5
Identities = 16/60 (26%), Positives = 32/60 (53%)
Query: 169 IANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADV 228
I G+R +V P GKT LL++IA P+ ++ + +++T ++ ++K +V
Sbjct: 40 IGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEV 99
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 28.5 bits (63), Expect = 1.7
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 177 LVGPNGHGKTTLLRHIASR 195
+VG NG GKTT + +
Sbjct: 11 VVGVNGVGKTTTIAKLGRY 29
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 28.1 bits (61), Expect = 1.9
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 177 LVGPNGHGKTTLLRHIASR 195
L G + GK+ ++R + S
Sbjct: 8 LNGGSSAGKSGIVRCLQSV 26
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 28.3 bits (62), Expect = 2.0
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 173 RRYGLVGPNGHGKTTLLRHI 192
R LVG G GKTTL +
Sbjct: 3 RTVALVGHAGSGKTTLTEAL 22
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 28.1 bits (61), Expect = 2.1
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 177 LVGPNGHGKTTLLRHIASR 195
+ G G GK+T+L +
Sbjct: 6 VTGIPGVGKSTVLAKVKEI 24
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 28.0 bits (61), Expect = 2.1
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 177 LVGPNGHGKTTLLRHIASRDLKVPPNIDILYC 208
LVG G GK+T+ R +A L V +D
Sbjct: 6 LVGLPGSGKSTIGRRLAKA-LGV-GLLDTDVA 35
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 28.7 bits (63), Expect = 2.1
Identities = 27/283 (9%), Positives = 73/283 (25%), Gaps = 44/283 (15%)
Query: 171 NGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKR 230
R G+ G G GK+T + + S + +L
Sbjct: 50 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAV---------------------- 87
Query: 231 TELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRAT 290
+ + + ++ + + A S G + ++
Sbjct: 88 -----DPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTL-----GGVAAKTRETML 137
Query: 291 KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLL---IVSH 347
+ G+ + + +E + E + + L G + + I
Sbjct: 138 LCEAAGFDV-------ILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFEL 190
Query: 348 DQSFLDNVCNEI--IHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAH 405
N ++ Y+ + A + + K + L +
Sbjct: 191 ADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSR 250
Query: 406 GQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPR 448
+ + T E+ +++E++ + ++ L+
Sbjct: 251 IEDHRSKLTATGEIAGKRREQDVKWMWALVHERLHQRLVGSAE 293
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 28.5 bits (62), Expect = 2.1
Identities = 15/133 (11%), Positives = 35/133 (26%), Gaps = 2/133 (1%)
Query: 169 IANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADV 228
I + G GKT L + P + + + T L+
Sbjct: 34 IESMAITEAFGEFRTGKTQLSHTLCVTAQL-PGAGGYPGGKIIFIDTENTFRPDRLRDIA 92
Query: 229 KRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA-DSAEPRARRILAGLGFSRAMQD 287
R + + + E E+ + + A ++ + I + + R
Sbjct: 93 DRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFS 152
Query: 288 RATKNFSGGWRMR 300
+ ++
Sbjct: 153 GRGELAERQQKLA 165
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 27.9 bits (61), Expect = 2.3
Identities = 13/46 (28%), Positives = 18/46 (39%)
Query: 177 LVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222
VG G GK+T ++ V N D L Q V+ A+
Sbjct: 19 AVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAALRQ 64
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 28.2 bits (61), Expect = 2.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 175 YGLVGPNGHGKTTLLRHIASR 195
YG +G G GKTTL + R
Sbjct: 49 YGSIGRVGIGKTTLAKFTVKR 69
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 27.9 bits (62), Expect = 2.4
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 13/58 (22%)
Query: 163 VNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAV 220
++ L+ G + G +G GK+ + R + ++ADD V
Sbjct: 5 MHGVLVDIYGLGVLITGDSGVGKSETALELVQRGHR-------------LIADDRVDV 49
>d2c6ja1 a.264.1.1 (A:15-308) Duffy receptor, alpha form {Plasmodium
knowlesi [TaxId: 5850]}
Length = 294
Score = 28.1 bits (62), Expect = 2.4
Identities = 7/68 (10%), Positives = 23/68 (33%)
Query: 379 KMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQ 438
K Y Q + K+++ + +K + + ++L ++ K + + ++
Sbjct: 222 KSYDQWITRKKKQWDVLSTKFSSVKKTQKIGTENIATAYDILKQELNGFKEATFENEINK 281
Query: 439 GPTELIQK 446
Sbjct: 282 RDNLYNHL 289
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 27.7 bits (60), Expect = 2.5
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 173 RRYGLVGPNGHGKTTLLRHIASR 195
+ ++G GK+ L+ +A+
Sbjct: 8 KTVAILGGESSGKSVLVNKLAAV 30
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 27.8 bits (60), Expect = 2.5
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 176 GLVGPNGHGKTTLLRHIASRDLKV 199
+VG GK+TLL + + + +
Sbjct: 9 AIVGRPNVGKSTLLNKLLGQKISI 32
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId:
2336]}
Length = 308
Score = 28.1 bits (61), Expect = 2.6
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 177 LVGPNGHGKTTLL 189
+VGPNG GK+ ++
Sbjct: 29 IVGPNGSGKSNII 41
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 28.1 bits (62), Expect = 2.7
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 169 IANGRRYGLVGPNGHGKTTLLRHI 192
+ R G+ GKTT I
Sbjct: 3 LKRLRNIGIAAHIDAGKTTTTERI 26
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 27.7 bits (61), Expect = 2.8
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
Query: 177 LVGPNGHGKTT----LLRHIASRDLKV 199
+VG NG GKTT L R + V
Sbjct: 14 MVGVNGVGKTTTIGKLARQFEQQGKSV 40
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 27.4 bits (59), Expect = 3.2
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 176 GLVGPNGHGKTTLLRHIASRDL 197
+VG GK+TLL ++ +
Sbjct: 9 AIVGKPNVGKSTLLNNLLGVKV 30
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 27.3 bits (59), Expect = 3.2
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 177 LVGPNGHGKTTLLRHIAS 194
LVG GKTT + IAS
Sbjct: 7 LVGLQYSGKTTFVNVIAS 24
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 27.7 bits (60), Expect = 3.3
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 177 LVGPNGHGKTTLLRHIASRDLK 198
+ GP GKT+LL + + ++
Sbjct: 8 IAGPQNSGKTSLLTLLTTDSVR 29
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 27.4 bits (60), Expect = 3.3
Identities = 10/27 (37%), Positives = 11/27 (40%), Gaps = 4/27 (14%)
Query: 177 LVGPNGHGKTT----LLRHIASRDLKV 199
LVG G GK T L + KV
Sbjct: 17 LVGVQGTGKATTAGKLAYFYKKKGFKV 43
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi
[TaxId: 556]}
Length = 170
Score = 27.2 bits (59), Expect = 3.4
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 177 LVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQ 210
+VG G G TT+ R +A L +D Q
Sbjct: 7 MVGARGCGMTTVGRELARA-LGY-EFVDTDIFMQ 38
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 28.0 bits (61), Expect = 3.5
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 157 KGNDLFVNANLLIANGRRYG---LVGPNGHGKTTLLRHIAS 194
G + A LL A G + G G GK+T +R +A+
Sbjct: 10 VGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAA 50
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 222
Score = 27.6 bits (60), Expect = 3.6
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 177 LVGPNGHGKTTLLRHI--ASRDLKV 199
L G G GKTTLLRHI K+
Sbjct: 8 LTGFLGAGKTTLLRHILNEQHGYKI 32
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 27.4 bits (60), Expect = 3.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 177 LVGPNGHGKTTLLRHIASR 195
+VG NG GKTT +A
Sbjct: 16 VVGVNGTGKTTSCGKLAKM 34
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 27.3 bits (59), Expect = 3.7
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 173 RRYGLVGPNGHGKTTLLRHIASRD 196
R VG GKT L + +
Sbjct: 1 RAVLFVGLCDSGKTLLFVRLLTGQ 24
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 27.0 bits (58), Expect = 3.8
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 177 LVGPNGHGKTTLLRHIASRDLKVP 200
+G G GK+T R +++
Sbjct: 7 TIGCPGSGKSTWAREFIAKNPGFY 30
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 27.8 bits (61), Expect = 3.8
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 169 IANGRRYGLVGPNGHGKTTLLRHI 192
+ N R ++ HGK+TL +
Sbjct: 14 VTNVRNMSVIAHVDHGKSTLTDSL 37
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 27.2 bits (59), Expect = 3.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 176 GLVGPNGHGKTTLLRHIASRDLKV 199
GLVG GK+TLL ++S K+
Sbjct: 5 GLVGFPSVGKSTLLSVVSSAKPKI 28
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 27.2 bits (59), Expect = 3.9
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 177 LVGPNGHGKTTLLRHIASRD 196
L+G + GKTTLL+ +AS D
Sbjct: 21 LLGLDNAGKTTLLKQLASED 40
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 27.4 bits (59), Expect = 4.0
Identities = 6/35 (17%), Positives = 9/35 (25%)
Query: 177 LVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQE 211
L G GK + R + + L
Sbjct: 11 LTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 45
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 27.2 bits (60), Expect = 4.0
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 163 VNANLLIANGRRYGLVGPNGHGKTTLLRHIASR 195
++ LL G L G +G GK+ + ++
Sbjct: 6 IHGVLLEVFGVGVLLTGRSGIGKSECALDLINK 38
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 26.9 bits (58), Expect = 4.3
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 176 GLVGPNGHGKTTLLRHIASRDLKV 199
GLVG GK++LL + K+
Sbjct: 5 GLVGYPNAGKSSLLAAMTRAHPKI 28
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 27.0 bits (58), Expect = 4.5
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 176 GLVGPNGHGKTTLLRHI 192
G+ G HGKTTL + +
Sbjct: 9 GIFGHIDHGKTTLSKVL 25
>d1n7va_ b.126.1.1 (A:) Adsorption protein p2 {Bacteriophage prd1
[TaxId: 10658]}
Length = 555
Score = 27.4 bits (60), Expect = 4.8
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 55 PVPASDEVPNKEEVEPEVAAP 75
P+P SD P+ E +EP P
Sbjct: 154 PLPMSDTAPDPETLEPGQTEP 174
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 27.0 bits (58), Expect = 4.8
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 176 GLVGPNGHGKTTLLRHIASRDLKV 199
G + GK+TL+ + + ++
Sbjct: 4 IFAGRSNVGKSTLIYRLTGKKVRR 27
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 27.2 bits (59), Expect = 5.1
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 177 LVGPNGHGKTTLLRHIASRDLKVPPNID 204
L G G GKT+L I ID
Sbjct: 37 LGGQPGSGKTSLRSAIFEETQGNVIVID 64
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 26.8 bits (58), Expect = 5.4
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 177 LVGPNGHGKTTLLRHIASR 195
+G G GK+TL R +A
Sbjct: 5 FIGFMGSGKSTLARALAKD 23
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 26.6 bits (57), Expect = 5.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 177 LVGPNGHGKTTLLRHIASR 195
LVGP G GK+T+ R +A +
Sbjct: 7 LVGPMGAGKSTIGRQLAQQ 25
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 26.6 bits (57), Expect = 5.8
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 177 LVGPNGHGKTTLLRHIASRD 196
+G + GKTTLL + +
Sbjct: 5 FLGLDNAGKTTLLHMLKNDR 24
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 26.9 bits (58), Expect = 5.8
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 177 LVGPNGHGKTTLLRHIA 193
+ +G GK+T +R A
Sbjct: 40 VTSGSGMGKSTFVRQQA 56
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 26.5 bits (57), Expect = 5.9
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 177 LVGPNGHGKTTLLRHIASR 195
+ GP G GK+T + +A++
Sbjct: 7 ITGPAGVGKSTTCKRLAAQ 25
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 26.6 bits (57), Expect = 6.0
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 176 GLVGPNGHGKTTLLRHIASRD 196
+VG GK+TL + +
Sbjct: 4 LIVGRPNVGKSTLFNKLVKKK 24
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 26.5 bits (57), Expect = 6.6
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 174 RYGLVGPNGHGKTTLLRHIASRDLKV 199
R +VG GK+TLL + + D +
Sbjct: 2 RMVIVGKPNVGKSTLLNRLLNEDRAI 27
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 26.3 bits (56), Expect = 7.5
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 171 NGRRYGLVGPNGHGKTTLLRHIASRDLKV 199
G G + GK++ L + ++
Sbjct: 15 TGIEVAFAGRSNAGKSSALNTLTNQKSLA 43
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli
[TaxId: 562]}
Length = 222
Score = 26.5 bits (57), Expect = 8.0
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 177 LVGPNGHGKTTLLRHI 192
L G NG GK+T +
Sbjct: 29 LSGGNGAGKSTTMAAF 44
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 26.7 bits (58), Expect = 8.3
Identities = 12/56 (21%), Positives = 15/56 (26%), Gaps = 1/56 (1%)
Query: 217 LTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRA 272
LT E K ++ E E L LK + AE R
Sbjct: 706 LTK-ERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAEARG 760
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 26.2 bits (56), Expect = 8.5
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 177 LVGPNGHGKTTLLRHIASRD 196
++G + GKTT+L+ D
Sbjct: 7 MLGLDNAGKTTILKKFNGED 26
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 26.2 bits (56), Expect = 8.5
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 177 LVGPNGHGKTTLLRHIASRD 196
+G + GKTTLL +
Sbjct: 18 FLGLDNAGKTTLLHMLKDDR 37
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 26.3 bits (56), Expect = 8.7
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 177 LVGPNGHGKTTLLRHIAS--RDLKVPPNIDILYCE 209
L+G G GKT LR + +D + I
Sbjct: 48 LLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI 82
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 26.1 bits (56), Expect = 8.8
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 177 LVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
+VG GKT + + + +
Sbjct: 7 MVGLPARGKTYISKKLTRYLNFIGVPTREF 36
>d1zroa2 a.264.1.1 (A:283-596) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 314
Score = 26.6 bits (58), Expect = 9.0
Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 379 KMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADED 437
Y + ++ +E+ KQ K+ +E + K +E K+ + +K K + +
Sbjct: 241 NSYKEWISKKKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEV-YLKKYSEKCSNLNFE 298
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 222
Score = 26.3 bits (57), Expect = 9.1
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 173 RRYGLVGPNGHGKTTLLRHI 192
R+ G GK+TL+ +
Sbjct: 10 LRFLTCGNVDDGKSTLIGRL 29
>d1h6qa_ b.88.1.2 (A:) Translationally controlled tumor protein TCTP
(histamine-releasing factor) {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 168
Score = 25.8 bits (57), Expect = 9.6
Identities = 14/56 (25%), Positives = 23/56 (41%)
Query: 355 VCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKK 410
V N + + K +Y + K Y + K R++E + + E A G KK
Sbjct: 65 VNNLVYSFRLSPTSFDKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGFVKK 120
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 26.5 bits (57), Expect = 9.7
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 177 LVGPNGHGKTTLL 189
+VG NG GK+ +
Sbjct: 31 IVGANGSGKSNIG 43
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.131 0.368
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,955,297
Number of extensions: 95841
Number of successful extensions: 637
Number of sequences better than 10.0: 1
Number of HSP's gapped: 606
Number of HSP's successfully gapped: 170
Length of query: 548
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 458
Effective length of database: 1,171,896
Effective search space: 536728368
Effective search space used: 536728368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.7 bits)