BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11937
(302 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BO1|A Chain A, Phosphatidylinositol Phosphate Kinase Type Ii Beta
pdb|1BO1|B Chain B, Phosphatidylinositol Phosphate Kinase Type Ii Beta
Length = 416
Score = 283 bits (725), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 150/301 (49%), Positives = 191/301 (63%), Gaps = 6/301 (1%)
Query: 1 MSWSQPIAVESPGKSGAKFYQSYDRLFIIKTLTSEEVERMHSFLKQYHPYIVERHGKTLL 60
++ S PI +S G+ G +F +YDR F+IKT++SE+V MH+ LK+YH +IVE HG TLL
Sbjct: 121 VTRSAPINSDSQGRCGTRFLTTYDRRFVIKTVSSEDVAEMHNILKKYHQFIVECHGNTLL 180
Query: 61 PQYLGMYRLTVDGVEHYVVAMRNVFSNHLTTHKKFDLKGSTVDREASEKEKEKDLPTFKD 120
PQ+LGMYRLTVDGVE Y+V RNVFS+ LT H+K+DLKGSTV REAS+KEK KDLPTFKD
Sbjct: 181 PQFLGMYRLTVDGVETYMVVTRNVFSHRLTVHRKYDLKGSTVAREASDKEKAKDLPTFKD 240
Query: 121 NDFVQGGTKIVIGDEAKEKLLETLNADVEFLTNLHLMDYSLLVGIHDCXXXXXXXXXXXX 180
NDF+ G K+ +G+E+K+ LE L DVEFL L +MDYSLLVGIHD
Sbjct: 241 NDFLNEGQKLHVGEESKKNFLEKLKRDVEFLAQLKIMDYSLLVGIHDVDRAEQEEMEVEE 300
Query: 181 XXXXXXXXXXXXXXXXXXXXRIPWGTTPPDSPHTLNRETSLQYDGAIIPELDIYAIPSAE 240
+G TPPDSP L G P +D+YA+ S E
Sbjct: 301 RAEDEECENDGVGGNLL----CSYG-TPPDSPGNLLSFPRFFGPGEFDPSVDVYAMKSHE 355
Query: 241 NAPVKEIYFIALIDVLTHYGVXXXXXXXXXTLKHGANVDGISTCDPEQYGKRFIEFLSKA 300
++P KE+YF+A+ID+LT Y T+KHGA + IST +PEQY KRF EF+S
Sbjct: 356 SSPKKEVYFMAIIDILTPYDTKKKAAHAAKTVKHGAGAE-ISTVNPEQYSKRFNEFMSNI 414
Query: 301 M 301
+
Sbjct: 415 L 415
>pdb|2YBX|A Chain A, Crystal Structure Of Human
Phosphatidylinositol-5-Phosphate 4-Kinase Type-2 Alpha
pdb|2YBX|B Chain B, Crystal Structure Of Human
Phosphatidylinositol-5-Phosphate 4-Kinase Type-2 Alpha
Length = 394
Score = 272 bits (696), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 151/298 (50%), Positives = 189/298 (63%), Gaps = 13/298 (4%)
Query: 1 MSWSQPIAVESPGKSGAKFYQSYDRLFIIKTLTSEEVERMHSFLKQYHPYIVERHGKTLL 60
++ S P+ +S +SGA+F+ SYD+ +IIKT+TSE+V MH+ LK+YH YIVE HG TLL
Sbjct: 105 LTRSAPLPNDSQARSGARFHTSYDKRYIIKTITSEDVAEMHNILKKYHQYIVECHGITLL 164
Query: 61 PQYLGMYRLTVDGVEHYVVAMRNVFSNHLTTHKKFDLKGSTVDREASEKEKEKDLPTFKD 120
PQ+LGMYRL VDGVE YV+ RNVFS+ L+ ++K+DLKGSTV REAS+KEK K+LPT KD
Sbjct: 165 PQFLGMYRLNVDGVEIYVIVTRNVFSHRLSVYRKYDLKGSTVAREASDKEKAKELPTLKD 224
Query: 121 NDFVQGGTKIVIGDEAKEKLLETLNADVEFLTNLHLMDYSLLVGIHDCXXXXXXXXXXXX 180
NDF+ G KI I D K+ LE L DVEFL L LMDYSLLVGIHD
Sbjct: 225 NDFINEGQKIYIDDNNKKVFLEKLKKDVEFLAQLKLMDYSLLVGIHDVERAEQEEVECEE 284
Query: 181 XXXXXXXXXXXXXXXXXXXXRIPWGTTPPDSP-HTLNRETSLQYDGAIIPELDIYAIPSA 239
P G TPPDSP +TLN L G P +D+Y I
Sbjct: 285 NDGEEEGESDGTH---------PVG-TPPDSPGNTLNSSPPLA-PGEFDPNIDVYGIKCH 333
Query: 240 ENAPVKEIYFIALIDVLTHYGVXXXXXXXXXTLKHGANVDGISTCDPEQYGKRFIEFL 297
EN+P KE+YF+A+I +LTHY T+KHGA + IST +PEQY KRF++F+
Sbjct: 334 ENSPRKEVYFMAIIXILTHYDAKKKAAHAAKTVKHGAGAE-ISTVNPEQYSKRFLDFI 390
>pdb|2GK9|A Chain A, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|B Chain B, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|C Chain C, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|D Chain D, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
Length = 392
Score = 224 bits (571), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 129/289 (44%), Positives = 170/289 (58%), Gaps = 4/289 (1%)
Query: 10 ESPGKSGAKFYQSYDRLFIIKTLTSEEVERMHSFLKQYHPYIVERHGKTLLPQYLGMYRL 69
ES G G +F SYDR +IK ++SE++ MHS L YH YIV+ HG TLLPQ+LGMYR+
Sbjct: 104 ESEGSDG-RFLISYDRTLVIKEVSSEDIADMHSNLSNYHQYIVKCHGNTLLPQFLGMYRV 162
Query: 70 TVDGVEHYVVAMRNVFSNHLTTHKKFDLKGSTVDREASEKEKEKDLPTFKDNDFVQGGTK 129
+VD + Y++ MRN+FS+ L H+K+DLKGS V REAS+KEK K+LPT +D DF+ K
Sbjct: 163 SVDNEDSYMLVMRNMFSHRLPVHRKYDLKGSLVSREASDKEKVKELPTLRDMDFLNKNQK 222
Query: 130 IVIGDEAKEKLLETLNADVEFLTNLHLMDYSLLVGIHDCXXXXXXXXXXXXXXXXXXXXX 189
+ IG+E K+ LE L DVEFL L +MDYSLL+GIHD
Sbjct: 223 VYIGEEEKKIFLEKLKRDVEFLVQLKIMDYSLLLGIHDIIRGSEPEEEAPVREDESEVDG 282
Query: 190 XXXXXXXXXXXRIPWGTTPPDSPHTLNRETSLQYDGAIIPELDIYAIPSAENAPVKEIYF 249
+GT+P ++ L G +D+YAI SAE AP KE+YF
Sbjct: 283 DCSLTGPPALVG-SYGTSPEGIGGYIHSHRPLG-PGEFESFIDVYAIRSAEGAPQKEVYF 340
Query: 250 IALIDVLTHYGVXXXXXXXXXTLKHGANVDGISTCDPEQYGKRFIEFLS 298
+ LID+LT Y T+KHGA + IST PEQY KRF++F++
Sbjct: 341 MGLIDILTQYDAKKKAAHAAKTVKHGAGAE-ISTVHPEQYAKRFLDFIT 388
>pdb|1TA9|A Chain A, Crystal Structure Of Glycerol Dehydrogenase From
Schizosaccharomyces Pombe
pdb|1TA9|B Chain B, Crystal Structure Of Glycerol Dehydrogenase From
Schizosaccharomyces Pombe
Length = 450
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 6 PIAVESPGKSGAKFYQSYDRLFIIKTLTSEEVERMHSFLKQY 47
PI E+P K G +F +S DR+F T + V+ H+F + Y
Sbjct: 45 PIETETPHKVGVEFEESKDRIF---TSPQKYVQGRHAFTRSY 83
>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THD|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
Length = 654
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 201 RIPWGTTPPDSPHTLNRETSLQYDGAIIPELDIYAIPSAENAPVKEIYFIALIDVLTHYG 260
++P G PP +P + +L+ + LDI + P+K +Y + I V HYG
Sbjct: 336 KVPEGPIPPSTPKFAYGKVTLEKLKTVGAALDILC----PSGPIKSLYPLTFIQVKQHYG 391
>pdb|1YIF|A Chain A, Crystal Structure Of Beta-1,4-Xylosidase From Bacillus
Subtilis, New York Structural Genomics Consortium
pdb|1YIF|B Chain B, Crystal Structure Of Beta-1,4-Xylosidase From Bacillus
Subtilis, New York Structural Genomics Consortium
pdb|1YIF|C Chain C, Crystal Structure Of Beta-1,4-Xylosidase From Bacillus
Subtilis, New York Structural Genomics Consortium
pdb|1YIF|D Chain D, Crystal Structure Of Beta-1,4-Xylosidase From Bacillus
Subtilis, New York Structural Genomics Consortium
Length = 533
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 3 WSQPIAVESPGKSGAKFYQSYDRLFIIKTLTSEEVERMHSF 43
WS+PI + S G + F+ + + +++ L ++R HSF
Sbjct: 115 WSEPIKLNSSGFDASLFHDTDGKKYLLNMLWDHRIDR-HSF 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,327,911
Number of Sequences: 62578
Number of extensions: 315661
Number of successful extensions: 712
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 703
Number of HSP's gapped (non-prelim): 13
length of query: 302
length of database: 14,973,337
effective HSP length: 98
effective length of query: 204
effective length of database: 8,840,693
effective search space: 1803501372
effective search space used: 1803501372
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)