RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11937
(302 letters)
>gnl|CDD|216538 pfam01504, PIP5K, Phosphatidylinositol-4-phosphate 5-Kinase. This
family contains a region from the common kinase core
found in the type I phosphatidylinositol-4-phosphate
5-kinase (PIP5K) family as described in. The family
consists of various type I, II and III PIP5K enzymes.
PIP5K catalyzes the formation of
phosphoinositol-4,5-bisphosphate via the phosphorylation
of phosphatidylinositol-4-phosphate a precursor in the
phosphinositide signaling pathway.
Length = 255
Score = 256 bits (656), Expect = 2e-85
Identities = 98/293 (33%), Positives = 137/293 (46%), Gaps = 53/293 (18%)
Query: 11 SPGKSGAKFYQSYDRLFIIKTLTSEEVERMHSFLKQYHPYIVERHGKTLLPQYLGMYRLT 70
S GKSG+ FY+S D FIIKT+ EV+ + FL Y + V+ + TLLP++ G+YR+
Sbjct: 14 SGGKSGSFFYKSRDDRFIIKTIKKSEVKFLLKFLPAYFEH-VKENPNTLLPKFYGLYRVK 72
Query: 71 V--DGVEHYVVAMRNVFSNHLTTHKKFDLKGSTVDREASEKEKEKDLPTFKDNDFVQGGT 128
+ Y V M N+F + H+++DLKGSTV R S KE KD DF++ G
Sbjct: 73 KKGGEKKIYFVVMENLFYSPRDIHRRYDLKGSTVGRSVSPKE---KEKVLKDLDFLEDGR 129
Query: 129 KIVIGDEAKEKLLETLNADVEFLTNLHLMDYSLLVGIHDCARAEAEELANENNGGGGGAD 188
I +G E K+ LLE L D EFL +L++MDYSLLVGIH ++EE
Sbjct: 130 PIFLGPEKKKLLLEQLKRDCEFLESLNIMDYSLLVGIHRVEDEDSEE------------- 176
Query: 189 DEDEEDSEGVGDRIPWGTTPPDSPHTLNRETSLQYDGAIIPELDIYAIPSAENAPVKEIY 248
A A + P EIY
Sbjct: 177 ---------------------------------GAAEASGEFDLDEGGIRAGDDPENEIY 203
Query: 249 FIALIDVLTHYGVKKQAAKAAKTLKHGANVDGISTCDPEQYGKRFIEFLSKAM 301
+I +ID+LT Y K+ K+L + IS P++Y KRF++F+ K
Sbjct: 204 YIGIIDILTPYTWDKKLEHFVKSLLYLDG-KTISIVPPKEYAKRFLKFIEKYF 255
>gnl|CDD|214623 smart00330, PIPKc, Phosphatidylinositol phosphate kinases.
Length = 342
Score = 249 bits (639), Expect = 1e-81
Identities = 101/293 (34%), Positives = 148/293 (50%), Gaps = 24/293 (8%)
Query: 11 SPGKSGAKFYQSYDRLFIIKTLTSEEVERMHSFLKQYHPYIVERHGKTLLPQYLGMYRLT 70
S GKSG+ FY S D FIIKT++ E++ + L Y+ +IV+ TLLP++ G+YR+
Sbjct: 68 SGGKSGSFFYLSLDDRFIIKTVSKSEIKSLLPMLPNYYEHIVQNP-NTLLPKFFGLYRVK 126
Query: 71 VDGVEH---YVVAMRNVFSNHLTTHKKFDLKGSTVDREASEKEKEKDLPTFKDNDFVQ-G 126
V G Y + M N+F + L H+K+DLKGST REA K+K K+LP KD D V+
Sbjct: 127 VKGGTEKKIYFLVMENLFYSDLKVHRKYDLKGSTRGREAD-KKKVKELPVLKDLDLVEMW 185
Query: 127 GTKIVIGDEAKEKLLETLNADVEFLTNLHLMDYSLLVGIHDCARAEAEELANENNGGGGG 186
I + AK+ LL+ + D EFL +L +MDYSLLVGIHD R + EE+
Sbjct: 186 NQPIYVDPLAKKALLKQIKRDCEFLESLKIMDYSLLVGIHDIERGQREEIELPPV----- 240
Query: 187 ADDEDEEDSEGVGDRIPWGTTPPDSPHTLNRETSLQYDGAIIPELDIYAIPSAENAPVKE 246
DE S + + + + + + G + AI +
Sbjct: 241 -YGSDESPSSESSNGGKAPDITGNLLVSNSPDGDGPFGG-----IPARAIRARR-----V 289
Query: 247 IYFIALIDVLTHYGVKKQAAKAAKTLKHGANVDGISTCDPEQYGKRFIEFLSK 299
+ ++ +ID+L Y K+ K++ H IS PEQY KRF +F+ K
Sbjct: 290 VLYLGIIDILQTYTWDKKLEHWVKSIGHDGKT--ISVVHPEQYAKRFRDFMDK 340
>gnl|CDD|238081 cd00139, PIPKc, Phosphatidylinositol phosphate kinases (PIPK)
catalyze the phosphorylation of phosphatidylinositol
phosphate on the fourth or fifth hydroxyl of the
inositol ring, to form phosphatidylinositol
bisphosphate. CD alignment includes type II
phosphatidylinositol phosphate kinases (PIPKII-beta),
type I andII PIPK (-alpha, -beta, and -gamma) kinases
and related yeast Fab1p and Mss4p kinases. Signaling by
phosphorylated species of phosphatidylinositol regulates
secretion, vesicular trafficking, membrane
translocation, cell adhesion, chemotaxis, DNA synthesis,
and cell cycling. The catalytic core domains of PIPKs
are structurally similar to PI3K, PI4K, and
cAMP-dependent protein kinases (PKA), the dimerization
region is a unique feature of the PIPKs.
Length = 313
Score = 201 bits (514), Expect = 3e-63
Identities = 73/171 (42%), Positives = 110/171 (64%), Gaps = 4/171 (2%)
Query: 1 MSWSQPIAVESPGKSGAKFYQSYDRLFIIKTLTSEEVERMHSFLKQYHPYIVERHGKTLL 60
+ S + S GKSG+ FY++ D FIIKT++ E+E + FL Y+ YI + TLL
Sbjct: 85 LCRSPLWELSSGGKSGSFFYKTLDDRFIIKTVSHSEIESLLKFLPNYYEYITQNPQNTLL 144
Query: 61 PQYLGMYRLTVD---GVEHYVVAMRNVFSNHLTTHKKFDLKGSTVDREASEKEKEKDLPT 117
P++ G+YR+ V G + + M N+F + L H+K+DLKGST +REAS+KEK+K+ P
Sbjct: 145 PKFFGLYRVKVKSGTGKKVDFLVMENLFYSRLKIHRKYDLKGSTRNREASKKEKQKENPV 204
Query: 118 FKDNDFVQGGT-KIVIGDEAKEKLLETLNADVEFLTNLHLMDYSLLVGIHD 167
KD + ++ + +G+ +K+ LL + D EFL +L++MDYSLLVGIHD
Sbjct: 205 LKDLNLLEMIEQPLFVGEHSKKALLTQIKRDCEFLESLNIMDYSLLVGIHD 255
Score = 58.5 bits (142), Expect = 7e-10
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 244 VKEIYFIALIDVLTHYGVKKQAAKAAKTLKHGANVDGISTCDPEQYGKRFIEFLSK 299
++ + ++ +ID+L Y K+ K+L H S PEQY KRF EF+ K
Sbjct: 256 IRLVLYLGIIDILRTYTWDKKLEHWVKSLGHDGG-KTPSVVSPEQYAKRFREFMDK 310
>gnl|CDD|215619 PLN03185, PLN03185, phosphatidylinositol phosphate kinase;
Provisional.
Length = 765
Score = 117 bits (295), Expect = 2e-29
Identities = 101/334 (30%), Positives = 156/334 (46%), Gaps = 59/334 (17%)
Query: 11 SPGKSGAKFYQSYDRLFIIKTLTSEEVERMHSFLKQYHPYIVERHGKTLLPQYLGMYRLT 70
SPGKSG+ F+ S D F+IKTL EV+ + L YH + V+ + TL+ ++ G++R+
Sbjct: 443 SPGKSGSVFFLSQDDRFMIKTLRKSEVKVLLRMLPDYHHH-VKTYENTLITKFFGLHRIK 501
Query: 71 VDGVEHY-VVAMRNVFSNHLTTHKKFDLKGSTVDREASEKEKEKDLPTFKDNDFVQGGTK 129
+ + V M N+F L H++FDLKGS++ R A + E +++ T KD D
Sbjct: 502 PSSGQKFRFVVMGNMFCTELRIHRRFDLKGSSLGRSADKVEIDEN-TTLKDLDL---NYS 557
Query: 130 IVIGDEAKEKLLETLNADVEFLTNLHLMDYSLLVGIHDCARAEAEELANENNGGGGGADD 189
+ ++ LL + D +FL +MDYSLL+G+H RA + L + D
Sbjct: 558 FYLEPSWRDALLRQIEIDSKFLEAQRIMDYSLLLGVH--FRA-PQHLRSLLPYSRSITAD 614
Query: 190 -----------EDEEDSEGVG-DRIPWG-----TTPPDSPHTLNRETSLQYDGAIIPELD 232
EDEE S G +P G T P PH R + L+ A E+D
Sbjct: 615 GLEVVAEEDTIEDEELSYPEGLVLVPRGADDGSTVP--GPHI--RGSRLRASAAGDEEVD 670
Query: 233 IYA-------------IPS-AENAPVKE-------------IYFIALIDVLTHYGVKKQA 265
+ +P+ AE P +E + ++ +ID+L Y + K+
Sbjct: 671 LLLPGTARLQIQLGVNMPARAERIPGREDKEKQSFHEVYDVVLYLGIIDILQEYNMSKKI 730
Query: 266 AKAAKTLKHGANVDGISTCDPEQYGKRFIEFLSK 299
A K+L+ + IS DP Y KRF+EF+ K
Sbjct: 731 EHAYKSLQFDSL--SISAVDPTFYSKRFLEFIQK 762
>gnl|CDD|227578 COG5253, MSS4, Phosphatidylinositol-4-phosphate 5-kinase [Signal
transduction mechanisms].
Length = 612
Score = 110 bits (277), Expect = 4e-27
Identities = 57/165 (34%), Positives = 87/165 (52%), Gaps = 11/165 (6%)
Query: 11 SPGKSGAKFYQSYDRLFIIKTLTSEEVERMHSFLKQYHPYIVERHGKTLLPQYLGMYRL- 69
+ GKSG+ F + D FIIKT++ E + +Y+ +++ + TLL + G YR+
Sbjct: 372 NGGKSGSFFLFTRDYKFIIKTISHSEHICFRPMIFEYYVHVLF-NPLTLLCKIFGFYRVK 430
Query: 70 ------TVDGVEHYVVAMRNVFSNHLTTHKKFDLKGSTVDREASEKEKEKD-LPTFKDND 122
+ + Y + M N+F H H+ FDLKGS +R K L D +
Sbjct: 431 SRSSISSSKSRKIYFIVMENLFYPHGI-HRIFDLKGSMRNRHVERTGKSMSVLLDMNDVE 489
Query: 123 FVQGGTKIVIGDEAKEKLLETLNADVEFLTNLHLMDYSLLVGIHD 167
+++ KIV G + K+ LL + DV FL+ L++MDYSLLVGI D
Sbjct: 490 WIRESPKIVFGLK-KKLLLSQVWNDVLFLSKLNIMDYSLLVGIDD 533
>gnl|CDD|99933 cd05501, Bromo_SP100C_like, Bromodomain, SP100C_like subfamily. The
SP100C protein is a splice variant of SP100, a major
component of PML-SP100 nuclear bodies (NBs), which are
poorly understood. It is covalently modified by SUMO-1
and may play a role in processes at the chromatin level.
Bromodomains are 110 amino acid long domains, that are
found in many chromatin associated proteins.
Bromodomains can interact specifically with acetylated
lysine.
Length = 102
Score = 30.1 bits (68), Expect = 0.39
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Query: 74 VEHYVVAMRNVFSNHLTTHKKFDLK--GSTVDREASEKEKEKDL 115
VE +V MR +F NH +K D G T+ EK+ EK+
Sbjct: 58 VEGFVRDMRLIFHNHKLFYKDDDFGQVGITL-----EKKFEKNF 96
>gnl|CDD|177859 PLN02209, PLN02209, serine carboxypeptidase.
Length = 437
Score = 30.0 bits (67), Expect = 1.6
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Query: 2 SWSQP---IAVESPGKSGAKFYQSYDRLFIIKTLTSEEVERMHSFLKQY---HPYIVERH 55
SW++ I ++ P SG SY + I +T + EV+++H FL+++ HP +
Sbjct: 113 SWTKTANIIFLDQPVGSGF----SYSKTPIERTSDTSEVKKIHEFLQKWLIKHPQFLSNP 168
Query: 56 GKTLLPQYLGM 66
+ Y GM
Sbjct: 169 FYVVGDSYSGM 179
>gnl|CDD|129611 TIGR00520, asnASE_II, L-asparaginase, type II. Two related
families of asparaginase (L-asparagine amidohydrolase,
EC 3.5.1.1) are designated type I and type II according
to the terminology in E. coli, which has both:
L-asparaginase I is a low-affinity enzyme found in the
cytoplasm, while L-asparaginase II is a high-affinity
periplasmic enzyme synthesized with a cleavable signal
sequence. This model describes L-asparaginases related
to type II of E. coli. Both the cytoplasmic and the cell
wall asparaginases of Saccharomyces cerevisiae belong to
this set. Members of this set from Acinetobacter
glutaminasificans and Pseudomonas fluorescens are
described as having both glutaminase and asparaginase
activitities. All members are homotetrameric [Energy
metabolism, Amino acids and amines].
Length = 349
Score = 28.6 bits (64), Expect = 3.7
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 208 PPDSPHTLNRETSLQYDGAIIPELDI-YAIPSAENAPVK 245
PP HT + S+ +P++DI YA +A V
Sbjct: 218 PPVRKHTCDTPFSVSNLDEPLPKVDIIYAYQNAPPLIVN 256
>gnl|CDD|233142 TIGR00826, EIIB_glc, PTS system, glucose-like IIB component. The
PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial
PTS transporters transport and concomitantly
phosphorylate their sugar substrates, and typically
consist of multiple subunits or protein domains. The Glc
family includes permeases specific for glucose,
N-acetylglucosamine and a large variety of a- and
b-glucosides. However, not all b-glucoside PTS permeases
are in this class, as the cellobiose (Cel) b-glucoside
PTS permease is in the Lac family (TC #4.A.3). These
permeases show limited sequence similarity with members
of the Fru family (TC #4.A.2). Several of the E. coli
PTS permeases in the Glc family lack their own IIA
domains and instead use the glucose IIA protein (IIAglc
or Crr). Most of these permeases have the B and C
domains linked together in a single polypeptide chain,
and a cysteyl residue in the IIB domain is
phosphorylated by direct phosphoryl transfer from
IIAglc(his~P). Those permeases which lack a IIA domain
include the maltose (Mal), arbutin-salicin-cellobiose
(ASC), trehalose (Tre), putative glucoside (Glv) and
sucrose (Scr) permeases of E. coli. Most, but not all
Scr permeases of other bacteria also lack a IIA domain.
This model is specific for the IIB domain of the Glc
family PTS transporters [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids, Signal
transduction, PTS].
Length = 88
Score = 26.5 bits (59), Expect = 6.2
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 93 KKFDLKGSTVDREASEKEKEKDLPTFKDNDFVQGGTKIVIG 133
+ LK T RE +++E K G + + G
Sbjct: 1 TRLRLK--TPGREKADEEAIAAGEGVKGVFTAAGQIQALGG 39
>gnl|CDD|188995 cd06456, M3A_DCP, Peptidase family M3 dipeptidyl carboxypeptidase
(DCP). Peptidase family M3 dipeptidyl carboxypeptidase
(DCP; Dcp II; peptidyl dipeptidase; EC 3.4.15.5). This
metal-binding M3A family also includes oligopeptidase A
(OpdA; EC 3.4.24.70) enzyme. DCP cleaves dipeptides off
the C-termini of various peptides and proteins, the
smallest substrate being N-blocked tripeptides and
unblocked tetrapeptides. DCP from E. coli is inhibited
by the anti-hypertensive drug captopril, an inhibitor of
the mammalian angiotensin converting enzyme (ACE, also
called peptidyl dipeptidase A). Oligopeptidase A (OpdA)
may play a specific role in the degradation of signal
peptides after they are released from precursor forms of
secreted proteins. It can also cleave N-acetyl-L-Ala.
Length = 654
Score = 27.8 bits (63), Expect = 7.8
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 17/78 (21%)
Query: 122 DFVQGGTKIVIGDEAKEKLLETLNADVEFLTN--------------LHLMDYSLLVGIHD 167
DFV+ G + DE K++ L +N ++ L+ L + D + L G+ +
Sbjct: 117 DFVRSGAAL---DEEKKERLREINEELAELSTKFSQNVLDATNAWALLVTDEADLAGLPE 173
Query: 168 CARAEAEELANENNGGGG 185
A A A E A E G GG
Sbjct: 174 SALAAAAEAAKERGGKGG 191
>gnl|CDD|130096 TIGR01024, rplS_bact, ribosomal protein L19, bacterial type. This
model describes bacterial ribosomoal protein L19 and its
chloroplast equivalent. Putative mitochondrial L19 are
found in several species (but not Saccharomyces
cerevisiae) and score between trusted and noise cutoffs
[Protein synthesis, Ribosomal proteins: synthesis and
modification].
Length = 113
Score = 26.5 bits (59), Expect = 9.6
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 104 REASEKEKEKDLPTFKDNDFVQGGTKIVIGDE 135
++ +++ +KDLP F+ D V+ KIV G +
Sbjct: 5 KQIEQEQLKKDLPDFRVGDTVRVHVKIVEGKK 36
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.134 0.388
Gapped
Lambda K H
0.267 0.0694 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,900,292
Number of extensions: 1562794
Number of successful extensions: 1273
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1254
Number of HSP's successfully gapped: 28
Length of query: 302
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 206
Effective length of database: 6,679,618
Effective search space: 1376001308
Effective search space used: 1376001308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (26.6 bits)