RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11937
(302 letters)
>2ybx_A Phosphatidylinositol-5-phosphate 4-kinase type-2; transferase,
signalling; HET: PHD; 2.56A {Homo sapiens} PDB: 1bo1_A
Length = 394
Score = 244 bits (622), Expect = 8e-79
Identities = 163/301 (54%), Positives = 204/301 (67%), Gaps = 11/301 (3%)
Query: 1 MSWSQPIAVESPGKSGAKFYQSYDRLFIIKTLTSEEVERMHSFLKQYHPYIVERHGKTLL 60
++ S P+ +S +SGA+F+ SYD+ +IIKT+TSE+V MH+ LK+YH YIVE HG TLL
Sbjct: 105 LTRSAPLPNDSQARSGARFHTSYDKRYIIKTITSEDVAEMHNILKKYHQYIVECHGITLL 164
Query: 61 PQYLGMYRLTVDGVEHYVVAMRNVFSNHLTTHKKFDLKGSTVDREASEKEKEKDLPTFKD 120
PQ+LGMYRL VDGVE YV+ RNVFS+ L+ ++K+DLKGSTV REAS+KEK K+LPT KD
Sbjct: 165 PQFLGMYRLNVDGVEIYVIVTRNVFSHRLSVYRKYDLKGSTVAREASDKEKAKELPTLKD 224
Query: 121 NDFVQGGTKIVIGDEAKEKLLETLNADVEFLTNLHLMDYSLLVGIHDCARAEAEELANEN 180
NDF+ G KI I D K+ LE L DVEFL L LMDYSLLVGIHD RAE EE+ E
Sbjct: 225 NDFINEGQKIYIDDNNKKVFLEKLKKDVEFLAQLKLMDYSLLVGIHDVERAEQEEVECEE 284
Query: 181 NGGGGGADDEDEEDSEGVGDRIPWGTTPPDSPHTLNRETSLQYDGAIIPELDIYAIPSAE 240
N G + EG D TPPDSP + G P +D+Y I E
Sbjct: 285 NDG----------EEEGESDGTHPVGTPPDSPGNTLNSSPPLAPGEFDPNIDVYGIKCHE 334
Query: 241 NAPVKEIYFIALIDVLTHYGVKKQAAKAAKTLKHGANVDGISTCDPEQYGKRFIEFLSKA 300
N+P KE+YF+A+I +LTHY KK+AA AAKT+KHGA IST +PEQY KRF++F+
Sbjct: 335 NSPRKEVYFMAIIXILTHYDAKKKAAHAAKTVKHGAG-AEISTVNPEQYSKRFLDFIGHI 393
Query: 301 M 301
+
Sbjct: 394 L 394
>2gk9_A Phosphatidylinositol-4-phosphate 5-kinase, type II, gamma;
phosphoinositide, structural genomics, structural
genomics consortium, SGC, transferase; 2.80A {Homo
sapiens}
Length = 392
Score = 232 bits (592), Expect = 3e-74
Identities = 139/299 (46%), Positives = 185/299 (61%), Gaps = 4/299 (1%)
Query: 1 MSWSQPIAVESPGKSGAKFYQSYDRLFIIKTLTSEEVERMHSFLKQYHPYIVERHGKTLL 60
+S ++ ES G S +F SYDR +IK ++SE++ MHS L YH YIV+ HG TLL
Sbjct: 95 VSLTRNPPSESEG-SDGRFLISYDRTLVIKEVSSEDIADMHSNLSNYHQYIVKCHGNTLL 153
Query: 61 PQYLGMYRLTVDGVEHYVVAMRNVFSNHLTTHKKFDLKGSTVDREASEKEKEKDLPTFKD 120
PQ+LGMYR++VD + Y++ MRN+FS+ L H+K+DLKGS V REAS+KEK K+LPT +D
Sbjct: 154 PQFLGMYRVSVDNEDSYMLVMRNMFSHRLPVHRKYDLKGSLVSREASDKEKVKELPTLRD 213
Query: 121 NDFVQGGTKIVIGDEAKEKLLETLNADVEFLTNLHLMDYSLLVGIHDCARAEAEELANEN 180
DF+ K+ IG+E K+ LE L DVEFL L +MDYSLL+GIHD R E E
Sbjct: 214 MDFLNKNQKVYIGEEEKKIFLEKLKRDVEFLVQLKIMDYSLLLGIHDIIRGSEPE--EEA 271
Query: 181 NGGGGGADDEDEEDSEGVGDRIPWGTTPPDSPHTLNRETSLQYDGAIIPELDIYAIPSAE 240
++ + + G + T P+ G +D+YAI SAE
Sbjct: 272 PVREDESEVDGDCSLTGPPALVGSYGTSPEGIGGYIHSHRPLGPGEFESFIDVYAIRSAE 331
Query: 241 NAPVKEIYFIALIDVLTHYGVKKQAAKAAKTLKHGANVDGISTCDPEQYGKRFIEFLSK 299
AP KE+YF+ LID+LT Y KK+AA AAKT+KHGA IST PEQY KRF++F++
Sbjct: 332 GAPQKEVYFMGLIDILTQYDAKKKAAHAAKTVKHGAG-AEISTVHPEQYAKRFLDFITN 389
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.2 bits (106), Expect = 2e-05
Identities = 29/176 (16%), Positives = 52/176 (29%), Gaps = 36/176 (20%)
Query: 20 YQSYDRLFIIKTLTSEEVERMH-SFLKQYHPYIVERHGKTLLPQ--------YLGMYRLT 70
+K E +H S + Y+ L+P ++G + L
Sbjct: 426 ISIPSIYLELKVKLENEYA-LHRSIVDHYNI-PKTFDSDDLIPPYLDQYFYSHIG-HHLK 482
Query: 71 VDGVEHYVVAMRNVFSNHLTTHKKFDLKGSTVDREASEKEKEKDLPTFKDNDFVQGGTKI 130
+ R VF + +K + + S + L +K I
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY--------I 534
Query: 131 VIGDEAKEKLLETLNADVEFL----TNLHLMDYSLLVGIHDCARAEAEELANENNG 182
D E+L+ + ++FL NL Y+ L+ I L E+
Sbjct: 535 CDNDPKYERLVNAI---LDFLPKIEENLICSKYTDLLRI---------ALMAEDEA 578
Score = 42.5 bits (99), Expect = 2e-04
Identities = 30/189 (15%), Positives = 53/189 (28%), Gaps = 52/189 (27%)
Query: 30 KTL-TS---------EEVERMHSFLKQYHPYIVERHGKTLLPQYLGMY----RLTVDGVE 75
K L T+ H L + + K+LL +YL V
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 76 HYVVAM----------RNVFSNHLTTHKKFDLKGSTVDREASEKEKE--KDLPTFKDNDF 123
+++ H+ K + S+++ + ++ L F +
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS-- 384
Query: 124 VQGGTKIVIGDEAKEKLLETL-----NADVEFLTNLHLMDYSLL--------VGIHDCAR 170
I LL + +DV + N L YSL+ + I
Sbjct: 385 ----AHI------PTILLSLIWFDVIKSDVMVVVN-KLHKYSLVEKQPKESTISIPSIYL 433
Query: 171 AEAEELANE 179
+L NE
Sbjct: 434 ELKVKLENE 442
Score = 38.7 bits (89), Expect = 0.002
Identities = 22/144 (15%), Positives = 47/144 (32%), Gaps = 43/144 (29%)
Query: 102 VDREASEKE-KEKD-LPTFKDN---DF----VQGGTKIVIGDEAKEKLLETLNADV---- 148
+D E E + + KD L F+D +F VQ K ++ E + ++ + +A
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 149 --------------EFLTNLHLMDYSLLVGIHDCARAEAEELANENNGGGGGADDEDEED 194
+F+ + ++Y L + E E+
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFL----------MSPIKTEQRQPSMMTRMYIEQR 116
Query: 195 SEGVGDRIPWGTTPPDSPHTLNRE 218
DR+ + + + ++R
Sbjct: 117 -----DRL-YNDNQVFAKYNVSRL 134
Score = 31.4 bits (70), Expect = 0.40
Identities = 52/335 (15%), Positives = 102/335 (30%), Gaps = 88/335 (26%)
Query: 2 SW-SQPIAVESPGKSGAKFYQSYDRLFIIKTLTSEEVERMHSFLKQYHPYIVERHGKTL- 59
+ PI E S + Y E+ +R+++ + + Y V R L
Sbjct: 92 KFLMSPIKTEQRQPSMM--TRMY----------IEQRDRLYNDNQVFAKYNVSRLQPYLK 139
Query: 60 LPQYLGMYR----LTVDGV----EHYVVAMRNVFSNHLTTHKKFD-----LKGSTVDREA 106
L Q L R + +DGV + +V +V ++ K D L +
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVAL--DVCLSY-KVQCKMDFKIFWLNLKNCNSPE 196
Query: 107 SEKEKEKDLPTFKDNDFVQGG-----TKIVIGDEAKEKLLETL------NA-----DVEF 150
+ E + L D ++ K+ I + +L L N +V+
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI-HSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 151 LTNLHLMDYS--LLV-----GIHDCARAEAE-ELANENNGGGGGADDEDEEDSEGVGDRI 202
+ + S +L+ + D A ++ +++ ++ + + +
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT-----LTPDEVKSLLLK- 309
Query: 203 PW-GTTPPDSPHTLNRETSLQYDGAIIPELDIYAIPSAENAPVKEIYFIALIDVLTHYGV 261
+ P D P RE P + I +++ +A D H
Sbjct: 310 -YLDCRPQDLP----REVL-----TTNP-RRLSIIA----ESIRD--GLATWDNWKHVNC 352
Query: 262 KKQAAKAAKTLKHGANVDGISTCDPEQYGKRFIEF 296
K +L +P +Y K F
Sbjct: 353 DKLTTIIESSLNV---------LEPAEYRKMFDRL 378
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.44
Identities = 3/15 (20%), Positives = 9/15 (60%)
Query: 35 EEVERMHSFLKQYHP 49
+ ++++ + LK Y
Sbjct: 20 QALKKLQASLKLYAD 34
>2k1o_A Putative; repressor, transcriptional regulator, D binding,
ribbon-helix-helix, HP0564, JHP0511, unknown funct
regulation; NMR {Helicobacter pylori}
Length = 66
Score = 27.1 bits (59), Expect = 1.5
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 19 FYQSYDRLFIIKTLTSEEVERMHSFLKQY 47
FY S + +++ L EEVE ++SF+K++
Sbjct: 20 FYLSKEEHDVLRRLADEEVESVNSFVKRH 48
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane
protein, structural protein; 2.70A {Staphylococcus
epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Length = 729
Score = 28.8 bits (64), Expect = 2.5
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 116 PTFKDNDFVQGGTKIVIGDEAKEKLLETLNADVEFLTNLHLMDYSLL 162
PT++D++FV G + + L + L D L +H + + L
Sbjct: 545 PTWRDDEFVSKGKYLFELKIDLDNLYKELGDDYVILLRMHYLISNAL 591
>16vp_A Protein (VP16, VMW65, ATIF); transcriptional regulatory protein;
2.10A {Human herpesvirus 1} SCOP: d.180.1.1
Length = 366
Score = 28.6 bits (63), Expect = 2.7
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 23 YDRLFIIKTLTSEEVERMHSFLKQYHPYIVERHGKTLLPQYLGMYRLTVDGVEHYVVAMR 82
Y + TL S+ VE +++ + + HG P T DG+ Y A+
Sbjct: 53 YRECKFLSTLPSDVVEWGDAYVPERTQIDIRAHGDVAFPTLP----ATRDGLGLYYEALS 108
Query: 83 NVFSNHL 89
F L
Sbjct: 109 RFFHAEL 115
>3ac6_A Phosphoribosylformylglycinamidine synthase 2; purine metabolism,
ATP-binding, ligase, nucleotide-binding, biosynthesis;
HET: ADP; 2.35A {Thermus thermophilus} PDB: 3viu_A*
Length = 725
Score = 28.4 bits (64), Expect = 3.7
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 24/89 (26%)
Query: 99 GSTVDREASEKEKEKDLPTFKDNDFVQGGTKIVIGDEAKEKLLETLNADVEFLTNLHLMD 158
G+ ++EK +D P VQ +GD KLL +E L ++
Sbjct: 211 GAAFASRELKEEKAEDRPA------VQ------VGDPFLGKLL------MEAT--LEAIE 250
Query: 159 YSLLVGIHDCARA----EAEELANENNGG 183
L+ G+ D A ELA+++ G
Sbjct: 251 LDLVEGVQDMGAAGLTSSLSELAHKSGLG 279
>3tij_A NUPC family protein; membrane transporter, nucleoside transporter,
drug transport uridine, nucleosides, membrane protein;
HET: URI DMU; 2.44A {Vibrio cholerae}
Length = 424
Score = 27.3 bits (61), Expect = 7.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 247 IYFIALIDVLTHYGV 261
I+F ALI VL + GV
Sbjct: 112 IFFSALISVLYYLGV 126
>3pf7_A Benzoyl-COA oxygenase component B; DIIRON center, epoxidase,
benzoyl coenzyme A, oxidoreductase; 1.90A {Azoarcus
evansii} PDB: 3per_A 3pm5_A* 3q1g_A
Length = 481
Score = 27.1 bits (59), Expect = 9.7
Identities = 6/33 (18%), Positives = 10/33 (30%)
Query: 93 KKFDLKGSTVDREASEKEKEKDLPTFKDNDFVQ 125
G + + + LPT D +V
Sbjct: 405 VHVSPDGRLISEAEWTHQHKNWLPTESDRLYVH 437
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.134 0.388
Gapped
Lambda K H
0.267 0.0708 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,848,762
Number of extensions: 303424
Number of successful extensions: 562
Number of sequences better than 10.0: 1
Number of HSP's gapped: 558
Number of HSP's successfully gapped: 18
Length of query: 302
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 209
Effective length of database: 4,105,140
Effective search space: 857974260
Effective search space used: 857974260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (25.8 bits)