RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11937
         (302 letters)



>d1bo1a_ d.143.1.2 (A:) Phosphatidylinositol phosphate kinase
           IIbeta, PIPK IIbeta {Human (Homo sapiens) [TaxId: 9606]}
          Length = 383

 Score =  291 bits (745), Expect = 8e-98
 Identities = 167/296 (56%), Positives = 211/296 (71%), Gaps = 6/296 (2%)

Query: 4   SQPIAVESPGKSGAKFYQSYDRLFIIKTLTSEEVERMHSFLKQYHPYIVERHGKTLLPQY 63
           S PI  +S G+ G +F  +YDR F+IKT++SE+V  MH+ LK+YH +IVE HG TLLPQ+
Sbjct: 91  SAPINSDSQGRCGTRFLTTYDRRFVIKTVSSEDVAEMHNILKKYHQFIVECHGNTLLPQF 150

Query: 64  LGMYRLTVDGVEHYVVAMRNVFSNHLTTHKKFDLKGSTVDREASEKEKEKDLPTFKDNDF 123
           LGMYRLTVDGVE Y+V  RNVFS+ LT H+K+DLKGSTV REAS+KEK KDLPTFKDNDF
Sbjct: 151 LGMYRLTVDGVETYMVVTRNVFSHRLTVHRKYDLKGSTVAREASDKEKAKDLPTFKDNDF 210

Query: 124 VQGGTKIVIGDEAKEKLLETLNADVEFLTNLHLMDYSLLVGIHDCARAEAEELANENNGG 183
           +  G K+ +G+E+K+  LE L  DVEFL  L +MDYSLLVGIHD  RAE EE+  E    
Sbjct: 211 LNEGQKLHVGEESKKNFLEKLKRDVEFLAQLKIMDYSLLVGIHDVDRAEQEEMEVEER-- 268

Query: 184 GGGADDEDEEDSEGVGDRIPWGTTPPDSPHTLNRETSLQYDGAIIPELDIYAIPSAENAP 243
              A+DE+ E+    G+ +    TPPDSP  L         G   P +D+YA+ S E++P
Sbjct: 269 ---AEDEECENDGVGGNLLCSYGTPPDSPGNLLSFPRFFGPGEFDPSVDVYAMKSHESSP 325

Query: 244 VKEIYFIALIDVLTHYGVKKQAAKAAKTLKHGANVDGISTCDPEQYGKRFIEFLSK 299
            KE+YF+A+ID+LT Y  KK+AA AAKT+KHGA  + IST +PEQY KRF EF+S 
Sbjct: 326 KKEVYFMAIIDILTPYDTKKKAAHAAKTVKHGAGAE-ISTVNPEQYSKRFNEFMSN 380


>d2zjrm1 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 108

 Score = 26.7 bits (59), Expect = 1.6
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 105 EASEKEKEKDLPTFKDNDFVQGGTKIVIGDEAKEKLLE 142
              E++  + LP F+  D V+  TK+  G+  + +  E
Sbjct: 13  RGIEQDHTRQLPDFRPGDTVRVDTKVREGNRTRSQAFE 50


>d1li5a1 a.27.1.1 (A:316-402) Cysteinyl-tRNA synthetase (CysRS)
           {Escherichia coli [TaxId: 562]}
          Length = 87

 Score = 25.3 bits (55), Expect = 3.9
 Identities = 7/28 (25%), Positives = 12/28 (42%)

Query: 262 KKQAAKAAKTLKHGANVDGISTCDPEQY 289
              A   A  L+  + V G+   +PE +
Sbjct: 59  MAAANAMASHLRKLSAVLGLLEQEPEAF 86


>d2gycn1 b.34.5.6 (N:1-114) Ribosomal protein L19 {Escherichia coli
           [TaxId: 562]}
          Length = 114

 Score = 25.2 bits (55), Expect = 5.7
 Identities = 8/39 (20%), Positives = 23/39 (58%)

Query: 104 REASEKEKEKDLPTFKDNDFVQGGTKIVIGDEAKEKLLE 142
           ++  +++ ++D+P+F+  D V+    +V G + + +  E
Sbjct: 5   KQLEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFE 43


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0654    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,164,571
Number of extensions: 55134
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 7
Length of query: 302
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 217
Effective length of database: 1,240,546
Effective search space: 269198482
Effective search space used: 269198482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.3 bits)