BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11941
(313 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FBK|A Chain A, Crystal Structure Of A Covalently Fused Nbs1-Mre11 Complex
With One Manganese Ion Per Active Site
pdb|4FBK|B Chain B, Crystal Structure Of A Covalently Fused Nbs1-Mre11 Complex
With One Manganese Ion Per Active Site
pdb|4FBQ|A Chain A, Crystal Structure Of A Covalently Fused Nbs1-Mre11 Complex
With Two Manganese Ions Per Active Site
pdb|4FBQ|B Chain B, Crystal Structure Of A Covalently Fused Nbs1-Mre11 Complex
With Two Manganese Ions Per Active Site
Length = 472
Score = 296 bits (758), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 147/319 (46%), Positives = 209/319 (65%), Gaps = 8/319 (2%)
Query: 1 MESQDSEEVKQEEVEYDDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQE 60
+ + S++V NTIRI+I+SD H+GY E D RGNDSFVSF EILE A +++
Sbjct: 56 FQKKASQKVDGSAGSAGSENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERD 115
Query: 61 VDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDVISDPKL-----VMCNDHV 115
VDM+LLGGD+FH NKPS L + L +LR C+GD+ ++++SD L +CN +
Sbjct: 116 VDMILLGGDIFHDNKPSRKALYQALRSLRLNCLGDKPCELELLSDTSLTTGDTAVCN--I 173
Query: 116 NYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLII 175
NY+DPN+N+++PVF+I+GNHDDPSG +ALDI+ +GLVNYFG+ + I ++P+++
Sbjct: 174 NYLDPNINVAIPVFSIHGNHDDPSGDGRYSALDILQVTGLVNYFGRVPENDNIVVSPILL 233
Query: 176 QKNETKVAIFGLGYVKDERLCNMIKHNKVKYMKPTDDKDIIY-ILVLHQNRPERGTVKNI 234
QK TK+A++G+ V+DERL + + NKVK+++P +D + +L +HQN +
Sbjct: 234 QKGFTKLALYGISNVRDERLYHSFRENKVKFLRPDLYRDEWFNLLTVHQNHSAHTPTSYL 293
Query: 235 AEDSIPSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMC 294
E I F+ F+LWGHEHEC I YN Q+F V QPGS +ATSL GE K CGIL
Sbjct: 294 PESFIQDFYDFVLWGHEHECLIDGSYNPTQKFTVVQPGSTIATSLSPGETAPKHCGILNI 353
Query: 295 NKQNYKLVPRSLETVRPFV 313
+++ L L TVRPF+
Sbjct: 354 TGKDFHLEKIRLRTVRPFI 372
>pdb|3T1I|A Chain A, Crystal Structure Of Human Mre11: Understanding
Tumorigenic Mutations
pdb|3T1I|B Chain B, Crystal Structure Of Human Mre11: Understanding
Tumorigenic Mutations
pdb|3T1I|C Chain C, Crystal Structure Of Human Mre11: Understanding
Tumorigenic Mutations
pdb|3T1I|D Chain D, Crystal Structure Of Human Mre11: Understanding
Tumorigenic Mutations
Length = 431
Score = 295 bits (755), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 146/302 (48%), Positives = 203/302 (67%), Gaps = 8/302 (2%)
Query: 17 DDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKP 76
DD NT +I++A+DIHLG+ E D RGND+FV+ +EIL A + EVD +LLGGDLFH NKP
Sbjct: 28 DDENTFKILVATDIHLGFXEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGDLFHENKP 87
Query: 77 SPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDH---VNYMDPNLNISLPVFTING 133
S TL CLE LRKYC GDR V +++SD + VNY D NLNIS+PVF+I+G
Sbjct: 88 SRKTLHTCLELLRKYCXGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISIPVFSIHG 147
Query: 134 NHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVKDE 193
NHDDP+G + + ALDI+S +G VN+FG+ ++ +I ++P+++QK TK+A++GLG + DE
Sbjct: 148 NHDDPTGADALCALDILSCAGFVNHFGRSXSVEKIDISPVLLQKGSTKIALYGLGSIPDE 207
Query: 194 RLCNMIKHNKVKYMKPTDDKDIIY-ILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHEH 252
RL + KV ++P +D++ + + V+HQNR + G+ I E + F ++WGHEH
Sbjct: 208 RLYRXFVNKKVTXLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDLVIWGHEH 267
Query: 253 ECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCN--KQNYKLVPRSLETVR 310
EC+I P N +Q F++ QPGS V TSL GEAV+K G+L K N +P L TVR
Sbjct: 268 ECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKXNXHKIP--LHTVR 325
Query: 311 PF 312
F
Sbjct: 326 QF 327
>pdb|4FBW|A Chain A, Crystal Structure Of An Unfused Mre11-Nbs1 Complex With
Two Manganese Ions Per Active Site
pdb|4FBW|B Chain B, Crystal Structure Of An Unfused Mre11-Nbs1 Complex With
Two Manganese Ions Per Active Site
Length = 417
Score = 295 bits (754), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 146/305 (47%), Positives = 205/305 (67%), Gaps = 8/305 (2%)
Query: 15 EYDDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHIN 74
E + NTIRI+I+SD H+GY E D RGNDSFVSF EILE A +++VDM+LLGGD+FH N
Sbjct: 7 ELHNENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERDVDMILLGGDIFHDN 66
Query: 75 KPSPTTLKKCLETLRKYCIGDRSVFIDVISDPKL-----VMCNDHVNYMDPNLNISLPVF 129
KPS L + L +LR C+GD+ ++++SD L +CN +NY+DPN+N+++PVF
Sbjct: 67 KPSRKALYQALRSLRLNCLGDKPCELELLSDTSLTTGDTAVCN--INYLDPNINVAIPVF 124
Query: 130 TINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGY 189
+I+GNHDDPSG +ALDI+ +GLVNYFG+ + I ++P+++QK TK+A++G+
Sbjct: 125 SIHGNHDDPSGDGRYSALDILQVTGLVNYFGRVPENDNIVVSPILLQKGFTKLALYGISN 184
Query: 190 VKDERLCNMIKHNKVKYMKPTDDKDIIY-ILVLHQNRPERGTVKNIAEDSIPSFFHFILW 248
V+DERL + + NKVK+++P +D + +L +HQN + E I F+ F+LW
Sbjct: 185 VRDERLYHSFRENKVKFLRPDLYRDEWFNLLTVHQNHSAHTPTSYLPESFIQDFYDFVLW 244
Query: 249 GHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPRSLET 308
GHEHEC I YN Q+F V QPGS +ATSL GE K CGIL +++ L L T
Sbjct: 245 GHEHECLIDGSYNPTQKFTVVQPGSTIATSLSPGETAPKHCGILNITGKDFHLEKIRLRT 304
Query: 309 VRPFV 313
VRPF+
Sbjct: 305 VRPFI 309
>pdb|4FCX|B Chain B, S.Pombe Mre11 Apoenzym
pdb|4FCX|A Chain A, S.Pombe Mre11 Apoenzym
Length = 404
Score = 293 bits (751), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 145/300 (48%), Positives = 203/300 (67%), Gaps = 8/300 (2%)
Query: 20 NTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPT 79
NTIRI+I+SD H+GY E D RGNDSFVSF EILE A +++VDM+LLGGD+FH NKPS
Sbjct: 7 NTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERDVDMILLGGDIFHDNKPSRK 66
Query: 80 TLKKCLETLRKYCIGDRSVFIDVISDPKL-----VMCNDHVNYMDPNLNISLPVFTINGN 134
L + L +LR C+GD+ ++++SD L +CN +NY+DPN+N+++PVF+I+GN
Sbjct: 67 ALYQALRSLRLNCLGDKPCELELLSDTSLTTGDTAVCN--INYLDPNINVAIPVFSIHGN 124
Query: 135 HDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVKDER 194
HDDPSG +ALDI+ +GLVNYFG+ + I ++P+++QK TK+A++G+ V+DER
Sbjct: 125 HDDPSGDGRYSALDILQVTGLVNYFGRVPENDNIVVSPILLQKGFTKLALYGISNVRDER 184
Query: 195 LCNMIKHNKVKYMKPTDDKDIIY-ILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHEHE 253
L + + NKVK+++P +D + +L +HQN + E I F+ F+LWGHEHE
Sbjct: 185 LYHSFRENKVKFLRPDLYRDEWFNLLTVHQNHSAHTPTSYLPESFIQDFYDFVLWGHEHE 244
Query: 254 CRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPRSLETVRPFV 313
C I YN Q+F V QPGS +ATSL GE K CGIL +++ L L TVRPF+
Sbjct: 245 CLIDGSYNPTQKFTVVQPGSTIATSLSPGETAPKHCGILNITGKDFHLEKIRLRTVRPFI 304
>pdb|3DSC|A Chain A, Crystal Structure Of P. Furiosus Mre11 Dna Synaptic
Complex
Length = 349
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 88/313 (28%), Positives = 131/313 (41%), Gaps = 72/313 (23%)
Query: 28 SDIHLGYLETDRERGNDSFV-SFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLE 86
+DIHLGY + + + + F +F+ LE A+ + VD +L+ GDLFH ++PSP TLKK +
Sbjct: 7 ADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDLFHSSRPSPGTLKKAIA 66
Query: 87 TLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS-GPELVA 145
L+ + +H S+PVF I GNHD GP +
Sbjct: 67 LLQ--------------------IPKEH----------SIPVFAIEGNHDRTQRGP---S 93
Query: 146 ALDIVSNSGLVNYFG----KCTN---LNEITLNPLIIQKNETK-VAIFGLGYVKDERLCN 197
L+++ + GLV G K N +E N + K K + I G+ Y+
Sbjct: 94 VLNLLEDFGLVYVIGMRKEKVENEYLTSERLGNGEYLVKGVYKDLEIHGMKYMS----SA 149
Query: 198 MIKHNK---VKYMKPTDDKDIIYILVLHQNRPERGTVKN-----IAEDSIPSFFHFILWG 249
+ NK + +PTD+ IL+LHQ E + I +P + + G
Sbjct: 150 WFEANKEILKRLFRPTDNA----ILMLHQGVREVSEARGEDYFEIGLGDLPEGYLYYALG 205
Query: 250 HEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILM-----CNKQNY---KL 301
H H+ R + Y+ V PGS E + GI NK Y
Sbjct: 206 HIHK-RYETSYSGSP---VVYPGSLERWDFGDYEVRYEWDGIKFKERYGVNKGFYIVEDF 261
Query: 302 VPRSLE-TVRPFV 313
PR +E VRPF+
Sbjct: 262 KPRFVEIKVRPFI 274
>pdb|1II7|A Chain A, Crystal Structure Of P. Furiosus Mre11 With Manganese And
Damp
pdb|1II7|B Chain B, Crystal Structure Of P. Furiosus Mre11 With Manganese And
Damp
Length = 333
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 88/313 (28%), Positives = 131/313 (41%), Gaps = 72/313 (23%)
Query: 28 SDIHLGYLETDRERGNDSFV-SFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLE 86
+DIHLGY + + + + F +F+ LE A+ + VD +L+ GDLFH ++PSP TLKK +
Sbjct: 7 ADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDLFHSSRPSPGTLKKAIA 66
Query: 87 TLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS-GPELVA 145
L+ + +H S+PVF I GNHD GP +
Sbjct: 67 LLQ--------------------IPKEH----------SIPVFAIEGNHDRTQRGP---S 93
Query: 146 ALDIVSNSGLVNYFG----KCTN---LNEITLNPLIIQKNETK-VAIFGLGYVKDERLCN 197
L+++ + GLV G K N +E N + K K + I G+ Y+
Sbjct: 94 VLNLLEDFGLVYVIGMRKEKVENEYLTSERLGNGEYLVKGVYKDLEIHGMKYMS----SA 149
Query: 198 MIKHNK---VKYMKPTDDKDIIYILVLHQNRPERGTVKN-----IAEDSIPSFFHFILWG 249
+ NK + +PTD+ IL+LHQ E + I +P + + G
Sbjct: 150 WFEANKEILKRLFRPTDNA----ILMLHQGVREVSEARGEDYFEIGLGDLPEGYLYYALG 205
Query: 250 HEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILM-----CNKQNY---KL 301
H H+ R + Y+ V PGS E + GI NK Y
Sbjct: 206 HIHK-RYETSYSGSP---VVYPGSLERWDFGDYEVRYEWDGIKFKERYGVNKGFYIVEDF 261
Query: 302 VPRSLE-TVRPFV 313
PR +E VRPF+
Sbjct: 262 KPRFVEIKVRPFI 274
>pdb|4HD0|A Chain A, Mre11 Atld1718 MUTATION RETAINS TEL1ATM ACTIVITY BUT
BLOCKS DNA Double-Strand Break Repair
pdb|4HD0|B Chain B, Mre11 Atld1718 MUTATION RETAINS TEL1ATM ACTIVITY BUT
BLOCKS DNA Double-Strand Break Repair
Length = 339
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 88/313 (28%), Positives = 131/313 (41%), Gaps = 72/313 (23%)
Query: 28 SDIHLGYLETDRERGNDSFV-SFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLE 86
+DIHLGY + + + + F +F+ LE A+ + VD +L+ GDLFH ++PSP TLKK +
Sbjct: 13 ADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDLFHSSRPSPGTLKKAIA 72
Query: 87 TLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS-GPELVA 145
L+ + +H S+PVF I GNHD GP +
Sbjct: 73 LLQ--------------------IPKEH----------SIPVFAIEGNHDRTQRGP---S 99
Query: 146 ALDIVSNSGLVNYFG----KCTN---LNEITLNPLIIQKNETK-VAIFGLGYVKDERLCN 197
L+++ + GLV G K N +E N + K K + I G+ Y+
Sbjct: 100 VLNLLEDFGLVYVIGMRKEKVENEYLTSERLGNGEYLVKGVYKDLEIHGMKYMS----SA 155
Query: 198 MIKHNK---VKYMKPTDDKDIIYILVLHQNRPERGTVKN-----IAEDSIPSFFHFILWG 249
+ NK + +PTD+ IL+LHQ E + I +P + + G
Sbjct: 156 WFEANKEILKRLFRPTDNA----ILMLHQGVREVSEARGEDYFEIGLGDLPEGYLYYARG 211
Query: 250 HEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILM-----CNKQNY---KL 301
H H+ R + Y+ V PGS E + GI NK Y
Sbjct: 212 HIHK-RYETSYSGSP---VVYPGSLERWDFGDYEVRYEWDGIKFKERYGVNKGFYIVEDF 267
Query: 302 VPRSLE-TVRPFV 313
PR +E VRPF+
Sbjct: 268 KPRFVEIKVRPFI 280
>pdb|3DSD|A Chain A, Crystal Structure Of P. Furiosus Mre11-H85s Bound To A
Branched Dna And Manganese
pdb|3DSD|B Chain B, Crystal Structure Of P. Furiosus Mre11-H85s Bound To A
Branched Dna And Manganese
Length = 349
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 87/313 (27%), Positives = 130/313 (41%), Gaps = 72/313 (23%)
Query: 28 SDIHLGYLETDRERGNDSFV-SFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLE 86
+DIHLGY + + + + F +F+ LE A+ + VD +L+ GDLFH ++PSP TLKK +
Sbjct: 7 ADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDLFHSSRPSPGTLKKAIA 66
Query: 87 TLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS-GPELVA 145
L+ + +H S+PVF I GN D GP +
Sbjct: 67 LLQ--------------------IPKEH----------SIPVFAIEGNSDRTQRGP---S 93
Query: 146 ALDIVSNSGLVNYFG----KCTN---LNEITLNPLIIQKNETK-VAIFGLGYVKDERLCN 197
L+++ + GLV G K N +E N + K K + I G+ Y+
Sbjct: 94 VLNLLEDFGLVYVIGMRKEKVENEYLTSERLGNGEYLVKGVYKDLEIHGMKYMS----SA 149
Query: 198 MIKHNK---VKYMKPTDDKDIIYILVLHQNRPERGTVKN-----IAEDSIPSFFHFILWG 249
+ NK + +PTD+ IL+LHQ E + I +P + + G
Sbjct: 150 WFEANKEILKRLFRPTDNA----ILMLHQGVREVSEARGEDYFEIGLGDLPEGYLYYALG 205
Query: 250 HEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILM-----CNKQNY---KL 301
H H+ R + Y+ V PGS E + GI NK Y
Sbjct: 206 HIHK-RYETSYSGSP---VVYPGSLERWDFGDYEVRYEWDGIKFKERYGVNKGFYIVEDF 261
Query: 302 VPRSLE-TVRPFV 313
PR +E VRPF+
Sbjct: 262 KPRFVEIKVRPFI 274
>pdb|1S8E|A Chain A, Crystal Structure Of Mre11-3
pdb|1S8E|B Chain B, Crystal Structure Of Mre11-3
Length = 333
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 86/313 (27%), Positives = 129/313 (41%), Gaps = 72/313 (23%)
Query: 28 SDIHLGYLETDRERGNDSFV-SFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLE 86
+DIHLGY + + + + F +F+ LE A+ + VD +L+ GDLFH ++PSP TLKK +
Sbjct: 7 ADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDLFHSSRPSPGTLKKAIA 66
Query: 87 TLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNH-DDPSGPELVA 145
L+ + +H S+PVF I GN GP +
Sbjct: 67 LLQ--------------------IPKEH----------SIPVFAIEGNLVRTQRGP---S 93
Query: 146 ALDIVSNSGLVNYFG----KCTN---LNEITLNPLIIQKNETK-VAIFGLGYVKDERLCN 197
L+++ + GLV G K N +E N + K K + I G+ Y+
Sbjct: 94 VLNLLEDFGLVYVIGMRKEKVENEYLTSERLGNGEYLVKGVYKDLEIHGMKYMS----SA 149
Query: 198 MIKHNK---VKYMKPTDDKDIIYILVLHQNRPERGTVKN-----IAEDSIPSFFHFILWG 249
+ NK + +PTD+ IL+LHQ E + I +P + + G
Sbjct: 150 WFEANKEILKRLFRPTDNA----ILMLHQGVREVSEARGEDYFEIGLGDLPEGYLYYALG 205
Query: 250 HEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILM-----CNKQNY---KL 301
H H+ R + Y+ V PGS E + GI NK Y
Sbjct: 206 HIHK-RYETSYSGSP---VVYPGSLERWDFGDYEVRYEWDGIKFKERYGVNKGFYIVEDF 261
Query: 302 VPRSLE-TVRPFV 313
PR +E VRPF+
Sbjct: 262 KPRFVEIKVRPFI 274
>pdb|2Q8U|A Chain A, Crystal Structure Of Mre11 From Thermotoga Maritima Msb8
(Tm1635) At 2.20 A Resolution
pdb|2Q8U|B Chain B, Crystal Structure Of Mre11 From Thermotoga Maritima Msb8
(Tm1635) At 2.20 A Resolution
Length = 336
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 22 IRIMIASDIHLGYLETDRERGNDSF----VSFEEILEQALDQEVDMVLLGGDLFHI-NKP 76
++I+ SD HLG R D + ++++E+A +EVD++LL GDL H N P
Sbjct: 19 LKILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKREVDLILLTGDLLHSRNNP 78
Query: 77 SPTTLKKCLETLRK 90
S L L+ L++
Sbjct: 79 SVVALHDLLDYLKR 92
>pdb|3THN|A Chain A, Crystal Structure Of Mre11 Core With Manganese
Length = 319
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 22 IRIMIASDIHLGYLETDRERGNDSF----VSFEEILEQALDQEVDMVLLGGDLFHI-NKP 76
++I+ SD HLG R D + ++++E+A +EVD++LL GDL H N P
Sbjct: 1 MKILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKREVDLILLTGDLLHSRNNP 60
Query: 77 SPTTLKKCLETLRK 90
S L L+ L++
Sbjct: 61 SVVALHDLLDYLKR 74
>pdb|3THO|B Chain B, Crystal Structure Of Mre11:rad50 In Its AtpADP BOUND
STATE
Length = 379
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 22 IRIMIASDIHLGYLETDRERGNDSF----VSFEEILEQALDQEVDMVLLGGDLFHI-NKP 76
++I+ SD HLG R D + ++++E+A +EVD++LL GDL H N P
Sbjct: 1 MKILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKREVDLILLTGDLLHSRNNP 60
Query: 77 SPTTLKKCLETLRK 90
S L L+ L++
Sbjct: 61 SVVALHDLLDYLKR 74
>pdb|3QG5|C Chain C, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|D Chain D, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 379
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 23 RIMIASDIHLGYLETDRERGNDSF----VSFEEILEQALDQEVDMVLLGGDLFHI-NKPS 77
+I+ SD HLG R D + ++++E+A +EVD++LL GDL H N PS
Sbjct: 2 KILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKREVDLILLTGDLLHSRNNPS 61
Query: 78 PTTLKKCLETLRK 90
L L+ L++
Sbjct: 62 VVALHDLLDYLKR 74
>pdb|3AUZ|A Chain A, Crystal Structure Of Mre11 With Manganese
Length = 333
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 28 SDIHLGYLE---TDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKC 84
+D HLGY + DRE+ D + SF+ +++ L+ + D+VL GDLF+ +P L+
Sbjct: 27 ADNHLGYRQYNLDDREK--DIYDSFKLCIKKILEIKPDVVLHSGDLFNDLRPPVKALRIA 84
Query: 85 LETLRKYCIGDRSVFI 100
++ +K + V+I
Sbjct: 85 MQAFKKLHENNIKVYI 100
>pdb|3AV0|A Chain A, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 386
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 28 SDIHLGYLE---TDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKC 84
+D HLGY + DRE+ D + SF+ +++ L+ + D+VL GDLF+ +P L+
Sbjct: 27 ADNHLGYRQYNLDDREK--DIYDSFKLCIKKILEIKPDVVLHSGDLFNDLRPPVKALRIA 84
Query: 85 LETLRKYCIGDRSVFI 100
++ +K + V+I
Sbjct: 85 MQAFKKLHENNIKVYI 100
>pdb|2ZUS|A Chain A, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase
pdb|2ZUS|B Chain B, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase
pdb|2ZUS|C Chain C, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase
pdb|2ZUS|D Chain D, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase
pdb|2ZUT|A Chain A, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Galnac
pdb|2ZUT|B Chain B, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Galnac
pdb|2ZUT|C Chain C, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Galnac
pdb|2ZUT|D Chain D, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Galnac
pdb|2ZUU|A Chain A, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac
pdb|2ZUU|B Chain B, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac
pdb|2ZUU|C Chain C, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac
pdb|2ZUU|D Chain D, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac
pdb|2ZUV|A Chain A, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac, Ethylene Glycol,
And Nitrate
pdb|2ZUV|B Chain B, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac, Ethylene Glycol,
And Nitrate
pdb|2ZUW|A Chain A, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac And Sulfate
pdb|2ZUW|B Chain B, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac And Sulfate
pdb|2ZUW|C Chain C, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac And Sulfate
pdb|2ZUW|D Chain D, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac And Sulfate
Length = 759
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 41 RGNDSFVSFEEILEQALDQEVDMVLLGGDL-FHINKPSPTTLKKCLETLRKYCIGDRSVF 99
R N F+SF+++L +D ++D+++ GG + T K +ET+R + G F
Sbjct: 481 RVNVRFISFDDVLAHGIDSDIDVIINGGPVDTAFTGGDVWTNPKLVETVRAWVRGG-GAF 539
Query: 100 IDV 102
+ V
Sbjct: 540 VGV 542
>pdb|2YY6|A Chain A, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
pdb|2YY6|B Chain B, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
Length = 213
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 64 VLLGGDLFHINKPSPTTLKKCLETL-----RKYCIGDRSVFIDVISDPKLVMCNDHVNYM 118
+++GGD F KPSPT + K LE L + +GD I+ Y+
Sbjct: 126 LIVGGDTFGEKKPSPTPVLKTLEILGEEPEKALIVGDTDADIEAGKRAGTKTALALWGYV 185
Query: 119 DPNLNISLPVFTINGNHD 136
LN +P FT++ D
Sbjct: 186 --KLNSQIPDFTLSRPSD 201
>pdb|2NYV|A Chain A, X-Ray Crystal Structure Of A Phosphoglycolate Phosphatase
From Aquifex Aeolicus
Length = 222
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 64 VLLGGDLFHINKPSPTTLKKCLETL-----RKYCIGDRSVFIDVISDPKLVMCNDHVNYM 118
+++GGD F KPSPT + K LE L + +GD I+ Y+
Sbjct: 128 LIVGGDTFGEKKPSPTPVLKTLEILGEEPEKALIVGDTDADIEAGKRAGTKTALALWGYV 187
Query: 119 DPNLNISLPVFTINGNHD 136
LN +P FT++ D
Sbjct: 188 --KLNSQIPDFTLSRPSD 203
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,646,271
Number of Sequences: 62578
Number of extensions: 409182
Number of successful extensions: 929
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 899
Number of HSP's gapped (non-prelim): 26
length of query: 313
length of database: 14,973,337
effective HSP length: 99
effective length of query: 214
effective length of database: 8,778,115
effective search space: 1878516610
effective search space used: 1878516610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)