BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11941
(313 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9IAM7|MRE11_CHICK Double-strand break repair protein MRE11 OS=Gallus gallus GN=MRE11
PE=2 SV=1
Length = 700
Score = 315 bits (807), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 149/300 (49%), Positives = 209/300 (69%), Gaps = 4/300 (1%)
Query: 17 DDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKP 76
DD +T +I+IA+DIHLGYLE D RGND+FV+F EILE A EVD +LLGGDLFH NKP
Sbjct: 8 DDEDTFKILIATDIHLGYLEKDAVRGNDTFVTFNEILEHAQKNEVDFILLGGDLFHENKP 67
Query: 77 SPTTLKKCLETLRKYCIGDRSVFIDVISDPKL---VMCNDHVNYMDPNLNISLPVFTING 133
S T+ CLE+LRKYC+GDR V +V+SD + + VNY D NLNI +P+F+I+G
Sbjct: 68 SRKTIHTCLESLRKYCMGDRPVSFEVLSDQAVNFQLSKFPWVNYQDENLNIFMPIFSIHG 127
Query: 134 NHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVKDE 193
NHDDP+G + + ALDI+S +GL+N+FG+ T++ +I ++P++++K TK+A++GLG + DE
Sbjct: 128 NHDDPTGVDALCALDILSCAGLLNHFGRSTSVEKIDISPILLRKGRTKIALYGLGAIPDE 187
Query: 194 RLCNMIKHNKVKYMKPTDDKDIIY-ILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHEH 252
RL M + +V ++P +D+D + + V+HQNR + G I E + F + +WGHEH
Sbjct: 188 RLYRMFVNKQVTMLRPKEDEDSWFNMFVIHQNRSKHGATNYIPEQFLDDFINLAVWGHEH 247
Query: 253 ECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPRSLETVRPF 312
EC+I P N +Q F+V QPGS V TSL GEAV+K G+L + K+ +LETVR F
Sbjct: 248 ECKITPAQNEQQHFYVTQPGSSVVTSLSPGEAVKKHIGLLRVKGKKMKMQRIALETVRTF 307
>sp|Q9W6K1|MRE11_XENLA Double-strand break repair protein MRE11 OS=Xenopus laevis GN=mre11
PE=2 SV=1
Length = 711
Score = 310 bits (795), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 150/302 (49%), Positives = 210/302 (69%), Gaps = 8/302 (2%)
Query: 17 DDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKP 76
DD +T +I++A+DIHLG++E D RGNDSFV+F+EIL A D EVD +LLGGDLFH NKP
Sbjct: 9 DDEDTFKILVATDIHLGFMEKDAVRGNDSFVAFDEILRLAQDNEVDFLLLGGDLFHDNKP 68
Query: 77 SPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDH---VNYMDPNLNISLPVFTING 133
S TL CLE LRKYC+GDR + +V+SD + VNY D NLNISLPVF+++G
Sbjct: 69 SRRTLHICLEQLRKYCMGDRPIEFEVLSDQSVNFGYSKFPWVNYQDNNLNISLPVFSVHG 128
Query: 134 NHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVKDE 193
NHDDP+G + + ALDI+S++GLVN+FG+ T++ +I ++P+++QK +K+A++GLG + DE
Sbjct: 129 NHDDPTGADALCALDILSSAGLVNHFGRATSVEKIDISPVLLQKGHSKIALYGLGSIPDE 188
Query: 194 RLCNMIKHNKVKYMKPTDDKDIIY-ILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHEH 252
RL M + +V ++P +D+ + + V+HQNR + G I E + F ++WGHEH
Sbjct: 189 RLYRMFVNKQVMMLRPREDESSWFNLFVIHQNRSKHGPTNYIPEQFLDEFLDLVIWGHEH 248
Query: 253 ECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMC--NKQNYKLVPRSLETVR 310
EC+I P N +Q F+V QPGS VATSL GEA +K G+L K N + +P L+TVR
Sbjct: 249 ECKIAPTRNEQQLFYVSQPGSSVATSLSPGEAEKKHVGLLRIKGKKMNMQKIP--LQTVR 306
Query: 311 PF 312
F
Sbjct: 307 QF 308
>sp|Q61216|MRE11_MOUSE Double-strand break repair protein MRE11A OS=Mus musculus GN=Mre11a
PE=2 SV=1
Length = 706
Score = 307 bits (786), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 146/300 (48%), Positives = 205/300 (68%), Gaps = 4/300 (1%)
Query: 17 DDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKP 76
DD +T +I++A+DIHLG++E D RGND+FV+F+EIL AL+ EVD +LLGGDLFH NKP
Sbjct: 8 DDEDTFKILVATDIHLGFMEKDAVRGNDTFVTFDEILRLALENEVDFILLGGDLFHENKP 67
Query: 77 SPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDH---VNYMDPNLNISLPVFTING 133
S TL CLE LRKYC+GDR V +VISD + VNY D NLNIS+PVF+I+G
Sbjct: 68 SRKTLHSCLELLRKYCMGDRPVQFEVISDQSVNFGFSKFPWVNYQDGNLNISIPVFSIHG 127
Query: 134 NHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVKDE 193
NHDDP+G + + ALD++S +G VN+FG+ ++ ++ ++P+++QK TK+A++GLG + DE
Sbjct: 128 NHDDPTGADALCALDVLSCAGFVNHFGRSMSVEKVDISPVLLQKGSTKLALYGLGSIPDE 187
Query: 194 RLCNMIKHNKVKYMKPTDDKDIIY-ILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHEH 252
RL M + KV ++P +D++ + + V+HQNR + G I E + F ++WGHEH
Sbjct: 188 RLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGNTNFIPEQFLDDFIDLVIWGHEH 247
Query: 253 ECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPRSLETVRPF 312
EC+I P N +Q F+V QPGS V TSL GEAV+K G+L + + L TVR F
Sbjct: 248 ECKIGPIKNEQQLFYVSQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMQKLPLRTVRRF 307
>sp|P49959|MRE11_HUMAN Double-strand break repair protein MRE11A OS=Homo sapiens GN=MRE11A
PE=1 SV=3
Length = 708
Score = 306 bits (783), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 144/300 (48%), Positives = 204/300 (68%), Gaps = 4/300 (1%)
Query: 17 DDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKP 76
DD NT +I++A+DIHLG++E D RGND+FV+ +EIL A + EVD +LLGGDLFH NKP
Sbjct: 8 DDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGDLFHENKP 67
Query: 77 SPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDH---VNYMDPNLNISLPVFTING 133
S TL CLE LRKYC+GDR V +++SD + VNY D NLNIS+PVF+I+G
Sbjct: 68 SRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISIPVFSIHG 127
Query: 134 NHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVKDE 193
NHDDP+G + + ALDI+S +G VN+FG+ ++ +I ++P+++QK TK+A++GLG + DE
Sbjct: 128 NHDDPTGADALCALDILSCAGFVNHFGRSMSVEKIDISPVLLQKGSTKIALYGLGSIPDE 187
Query: 194 RLCNMIKHNKVKYMKPTDDKDIIY-ILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHEH 252
RL M + KV ++P +D++ + + V+HQNR + G+ I E + F ++WGHEH
Sbjct: 188 RLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDLVIWGHEH 247
Query: 253 ECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPRSLETVRPF 312
EC+I P N +Q F++ QPGS V TSL GEAV+K G+L + + L TVR F
Sbjct: 248 ECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIPLHTVRQF 307
>sp|Q9JIM0|MRE11_RAT Double-strand break repair protein MRE11A OS=Rattus norvegicus
GN=Mre11a PE=2 SV=1
Length = 706
Score = 306 bits (783), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 143/300 (47%), Positives = 205/300 (68%), Gaps = 4/300 (1%)
Query: 17 DDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKP 76
DD +T +I++A+DIHLG++E D RGND+FV+F+EIL AL+ EVD +LLGGDLFH NKP
Sbjct: 8 DDEDTFKILVATDIHLGFMEKDAVRGNDTFVTFDEILRLALENEVDFILLGGDLFHENKP 67
Query: 77 SPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDH---VNYMDPNLNISLPVFTING 133
S TL CLE LRKYC+GDR V ++ISD + VNY D NLNIS+PVF+I+G
Sbjct: 68 SRKTLHSCLELLRKYCMGDRPVQFEIISDQSVNFGFSKFPWVNYRDGNLNISIPVFSIHG 127
Query: 134 NHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVKDE 193
NHDDP+G + + ALD++S +G VN+FG+ ++ ++ ++P+++QK TK+A++GLG + DE
Sbjct: 128 NHDDPTGADALCALDVLSCAGFVNHFGRSMSVEKVDISPVLLQKGSTKLALYGLGSIPDE 187
Query: 194 RLCNMIKHNKVKYMKPTDDKDIIY-ILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHEH 252
RL M + KV ++P +D++ + + V+HQNR + G+ I E + F ++WGHEH
Sbjct: 188 RLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDLVIWGHEH 247
Query: 253 ECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPRSLETVRPF 312
EC+I P N +Q F+V QPGS V T+L GE V+K G+L + + L TVR F
Sbjct: 248 ECKIGPTRNEQQLFYVSQPGSSVVTALSPGETVKKHVGLLRVKGRKMNMQKLPLRTVRQF 307
>sp|Q60HE6|MRE11_MACFA Double-strand break repair protein MRE11A OS=Macaca fascicularis
GN=MRE11A PE=2 SV=1
Length = 707
Score = 306 bits (783), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 147/302 (48%), Positives = 206/302 (68%), Gaps = 8/302 (2%)
Query: 17 DDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKP 76
DD NT +I++A+DIHLG++E D RGND+FV+ +EIL A EVD +LLGGDLFH NKP
Sbjct: 8 DDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLARGNEVDFILLGGDLFHENKP 67
Query: 77 SPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDH---VNYMDPNLNISLPVFTING 133
S TL CLE LRKYC+GDR V +++SD + VNY D NLNIS+PVF+I+G
Sbjct: 68 SRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISIPVFSIHG 127
Query: 134 NHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVKDE 193
NHDDP+G + + ALDI+S +G VN+FG+ ++ +I ++P+++QK TK+A++GLG + DE
Sbjct: 128 NHDDPTGADALCALDILSCAGFVNHFGRSMSVEKIDISPVLLQKGSTKIALYGLGSIPDE 187
Query: 194 RLCNMIKHNKVKYMKPTDDKDIIY-ILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHEH 252
RL M + KV ++P +D++ + + V+HQNR + G+ I E + F ++WGHEH
Sbjct: 188 RLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDLVIWGHEH 247
Query: 253 ECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMC--NKQNYKLVPRSLETVR 310
EC+I P N +Q F++ QPGS V TSL GEAV+K G+L K N + +P L TVR
Sbjct: 248 ECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMQKIP--LHTVR 305
Query: 311 PF 312
F
Sbjct: 306 QF 307
>sp|Q09683|RAD32_SCHPO DNA repair protein rad32 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rad32 PE=1 SV=1
Length = 649
Score = 296 bits (759), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 146/305 (47%), Positives = 205/305 (67%), Gaps = 8/305 (2%)
Query: 15 EYDDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHIN 74
E + NTIRI+I+SD H+GY E D RGNDSFVSF EILE A +++VDM+LLGGD+FH N
Sbjct: 11 ELHNENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERDVDMILLGGDIFHDN 70
Query: 75 KPSPTTLKKCLETLRKYCIGDRSVFIDVISDPKL-----VMCNDHVNYMDPNLNISLPVF 129
KPS L + L +LR C+GD+ ++++SD L +CN +NY+DPN+N+++PVF
Sbjct: 71 KPSRKALYQALRSLRLNCLGDKPCELELLSDTSLTTGDTAVCN--INYLDPNINVAIPVF 128
Query: 130 TINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGY 189
+I+GNHDDPSG +ALDI+ +GLVNYFG+ + I ++P+++QK TK+A++G+
Sbjct: 129 SIHGNHDDPSGDGRYSALDILQVTGLVNYFGRVPENDNIVVSPILLQKGFTKLALYGISN 188
Query: 190 VKDERLCNMIKHNKVKYMKPTDDKDIIY-ILVLHQNRPERGTVKNIAEDSIPSFFHFILW 248
V+DERL + + NKVK+++P +D + +L +HQN + E I F+ F+LW
Sbjct: 189 VRDERLYHSFRENKVKFLRPDLYRDEWFNLLTVHQNHSAHTPTSYLPESFIQDFYDFVLW 248
Query: 249 GHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPRSLET 308
GHEHEC I YN Q+F V QPGS +ATSL GE K CGIL +++ L L T
Sbjct: 249 GHEHECLIDGSYNPTQKFTVVQPGSTIATSLSPGETAPKHCGILNITGKDFHLEKIRLRT 308
Query: 309 VRPFV 313
VRPF+
Sbjct: 309 VRPFI 313
>sp|Q9XGM2|MRE11_ARATH Double-strand break repair protein MRE11 OS=Arabidopsis thaliana
GN=MRE11 PE=2 SV=1
Length = 720
Score = 273 bits (698), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 142/308 (46%), Positives = 199/308 (64%), Gaps = 12/308 (3%)
Query: 17 DDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKP 76
D +T+R+++A+D HLGY+E D R +DSF +FEEI A +++VD +LLGGDLFH NKP
Sbjct: 5 DFSDTLRVLVATDCHLGYMEKDEIRRHDSFKAFEEICSIAEEKQVDFLLLGGDLFHENKP 64
Query: 77 SPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCN--DHVNYMDPNLNISLPVFTINGN 134
S TTL K +E LR++C+ D+ V V+SD + N VNY DP+ N+ LPVF+I+GN
Sbjct: 65 SRTTLVKAIEILRRHCLNDKPVQFQVVSDQTVNFQNAFGQVNYEDPHFNVGLPVFSIHGN 124
Query: 135 HDDPSGPELVAALDIVSNSGLVNYFGKC----TNLNEITLNPLIIQKNETKVAIFGLGYV 190
HDDP+G + ++A+DI+S LVNYFGK + + +ITL P++++K T VA++GLG +
Sbjct: 125 HDDPAGVDNLSAIDILSACNLVNYFGKMVLGGSGVGQITLYPILMKKGSTTVALYGLGNI 184
Query: 191 KDERLCNMIKH-NKVKYMKPT-----DDKDIIYILVLHQNRPERGTVKNIAEDSIPSFFH 244
+DERL M + + V++M+P D D ILVLHQNR + I+E +P F
Sbjct: 185 RDERLNRMFQTPHAVQWMRPEVQEGCDVSDWFNILVLHQNRVKSNPKNAISEHFLPRFLD 244
Query: 245 FILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPR 304
FI+WGHEHEC I P+ + FH+ QPGS VATSL GE+ K +L Y+
Sbjct: 245 FIVWGHEHECLIDPQEVSGMGFHITQPGSSVATSLIDGESKPKHVLLLEIKGNQYRPTKI 304
Query: 305 SLETVRPF 312
L +VRPF
Sbjct: 305 PLTSVRPF 312
>sp|Q9C291|MRE11_NEUCR Double-strand break repair protein mus-23 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=mus-23 PE=3 SV=3
Length = 739
Score = 271 bits (694), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 132/297 (44%), Positives = 194/297 (65%), Gaps = 3/297 (1%)
Query: 20 NTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPT 79
+TIRI++++D H+GY E R +DS+ +F+EI++ A Q+VDMVLLGGDLFH NKPS
Sbjct: 7 DTIRILVSTDNHVGYAERHPVRKDDSWRTFDEIMQIAKKQDVDMVLLGGDLFHENKPSRK 66
Query: 80 TLKKCLETLRKYCIGDRSVFIDVISDPKLVM--CNDHVNYMDPNLNISLPVFTINGNHDD 137
++ + + +LRK+C+G + ++ +SD V VNY DP++N+++PVF+I+GNHDD
Sbjct: 67 SMYQVMRSLRKHCLGMKPCELEFLSDAAEVFEGAFPFVNYEDPDINVAIPVFSIHGNHDD 126
Query: 138 PSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVKDERLCN 197
PSG +LD++ +GLVNYFG+ + I + P+++QK TK+A++GL V+DER+
Sbjct: 127 PSGDGHYCSLDLLQAAGLVNYFGRVPEADNIHVKPILLQKGRTKMALYGLSNVRDERMHR 186
Query: 198 MIKHNKVKYMKPTDDK-DIIYILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHEHECRI 256
+ NKV++ +P K D +L LHQN +AE+ +P F ++WGHEHEC I
Sbjct: 187 TFRDNKVRFYRPNQQKNDWFNLLALHQNHYAHTRTSYVAENMLPDFMDLVIWGHEHECLI 246
Query: 257 KPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPRSLETVRPFV 313
P N + FHV QPGS VATSL GEAV K IL + +++ L+TVRPFV
Sbjct: 247 DPVRNPETGFHVMQPGSSVATSLVPGEAVPKHVAILNITGRKFEVDKIPLKTVRPFV 303
>sp|Q9UVN9|MRE11_COPC7 Double-strand break repair protein MRE11 OS=Coprinopsis cinerea
(strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)
GN=MRE11 PE=3 SV=1
Length = 731
Score = 265 bits (676), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 132/312 (42%), Positives = 194/312 (62%), Gaps = 15/312 (4%)
Query: 17 DDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKP 76
D +TI+I++A+D H+GYLE D RG DS +F EIL+ A+ EVD +LL GDLFH NKP
Sbjct: 18 DPEDTIKILLATDNHIGYLERDPIRGQDSINTFREILQLAVKNEVDFILLAGDLFHENKP 77
Query: 77 SPTTLKKCLETLRKYCIGDRSVFIDVISDP----KLVMCNDHVNYMDPNLNISLPVFTIN 132
S L + L LR+Y +GD+ + ++++SDP +NY DPN NIS+PVF+I+
Sbjct: 78 SRDCLYQTLALLREYTLGDKPIQVELLSDPDEGKAAGFSFPAINYEDPNFNISIPVFSIH 137
Query: 133 GNHDDPSGPEL---VAALDIVSNSGLVNYFGKC--------TNLNEITLNPLIIQKNETK 181
GNHDDP GP + + ALD++S SGL+NY GK I + P++++K TK
Sbjct: 138 GNHDDPQGPGVNGALCALDVLSVSGLLNYMGKFDLPTSDADAATTGIAVRPVLLRKGSTK 197
Query: 182 VAIFGLGYVKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTVKNIAEDSIPS 241
+ ++G+G VKD+R+ ++ N+V+ P D + IL++HQNR + G + + E
Sbjct: 198 LGMYGVGNVKDQRMHFELRSNRVRMYMPKDKDEWFNILLVHQNRVKHGPQEYVPEGMFDD 257
Query: 242 FFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKL 301
++WGHEH+CRI PE + +++ QPGS VATSL GEA++K +L + ++L
Sbjct: 258 SVDLVVWGHEHDCRIIPEPVAGKNYYITQPGSSVATSLADGEAIEKHVALLEIKGKEFQL 317
Query: 302 VPRSLETVRPFV 313
P L TVRPFV
Sbjct: 318 TPIPLRTVRPFV 329
>sp|Q23255|MRE11_CAEEL Double-strand break repair protein mre-11 OS=Caenorhabditis elegans
GN=mre-11 PE=1 SV=2
Length = 728
Score = 253 bits (647), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 127/305 (41%), Positives = 189/305 (61%), Gaps = 14/305 (4%)
Query: 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTL 81
I+I++A+DIH GY E D+ +FEE+L+ A +Q+VDM+LLGGDLFH N PS
Sbjct: 66 IKILVATDIHCGYGENKANIHMDAVNTFEEVLQIATEQKVDMILLGGDLFHENNPSREVQ 125
Query: 82 KKCLETLRKYCIGDRSVFIDVISDPKLVMCND---HVNYMDPNLNISLPVFTINGNHDDP 138
+ + LR+YC+ + ++ +SD + HVNY D NLN+ LP+FTI+GNHDD
Sbjct: 126 HRVTQLLRQYCLNGNPIALEFLSDASVNFNQSVFGHVNYYDQNLNVGLPIFTIHGNHDDL 185
Query: 139 SGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVKDERLCNM 198
SG L ALD++ SGLVN FGK +N+ E ++P++++K ET++A++G+G +D+RL
Sbjct: 186 SGKGLT-ALDLLHESGLVNLFGKHSNIQEFIVSPILLRKGETRLALYGIGSQRDDRLVRA 244
Query: 199 IKHNKVKYMKP-TDDKDIIYILVLHQNRPERGTVKN----IAEDSIPSFFHFILWGHEHE 253
K+N + +++P +D + VLHQNRP R ++ + E IP FF ++WGHEHE
Sbjct: 245 FKNNSISFLRPNAGAEDWFNLFVLHQNRPRRAMHRSTGNFLPESLIPQFFDLLIWGHEHE 304
Query: 254 CRIKPEYNTKQR-----FHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPRSLET 308
C+ P+Y F++ QPGS VATSL EA+QK ++ + + P L+T
Sbjct: 305 CKPDPQYVASSEAVGDGFYILQPGSTVATSLTPEEALQKNAFLIKIKGRKFASKPIPLQT 364
Query: 309 VRPFV 313
VRP V
Sbjct: 365 VRPMV 369
>sp|P32829|MRE11_YEAST Double-strand break repair protein MRE11 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MRE11 PE=1
SV=2
Length = 692
Score = 246 bits (628), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 131/304 (43%), Positives = 187/304 (61%), Gaps = 5/304 (1%)
Query: 14 VEYDDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHI 73
++Y D +TIRI+I +D H+GY E D G+DS+ +F E++ A + VDMV+ GDLFH+
Sbjct: 1 MDYPDPDTIRILITTDNHVGYNENDPITGDDSWKTFHEVMMLAKNNNVDMVVQSGDLFHV 60
Query: 74 NKPSPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCND---HVNYMDPNLNISLPVFT 130
NKPS +L + L+TLR C+GD+ ++++SDP V D +VNY DPN NIS+PVF
Sbjct: 61 NKPSKKSLYQVLKTLRLCCMGDKPCELELLSDPSQVFHYDEFTNVNYEDPNFNISIPVFG 120
Query: 131 INGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYV 190
I+GNHDD SG L+ +DI+ +GL+N+FGK ++I + PL+ QK TK+A++GL V
Sbjct: 121 ISGNHDDASGDSLLCPMDILHATGLINHFGKVIESDKIKVVPLLFQKGSTKLALYGLAAV 180
Query: 191 KDERLCNMIKHNKVKYMKPT-DDKDIIYILVLHQNRPERGTVKNIAEDSIPSFFHFILWG 249
+DERL K V + PT + + ++ +HQN + E +P F ++WG
Sbjct: 181 RDERLFRTFKDGGVTFEVPTMREGEWFNLMCVHQNHTGHTNTAFLPEQFLPDFLDMVIWG 240
Query: 250 HEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGIL-MCNKQNYKLVPRSLET 308
HEHEC +N + F V QPGS VATSLC EA K IL + + K+ P LET
Sbjct: 241 HEHECIPNLVHNPIKNFDVLQPGSSVATSLCEAEAQPKYVFILDIKYGEAPKMTPIPLET 300
Query: 309 VRPF 312
+R F
Sbjct: 301 IRTF 304
>sp|Q8SRV0|MRE11_ENCCU Double-strand break repair protein MRE11 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=MRE11 PE=3 SV=1
Length = 567
Score = 209 bits (531), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 118/292 (40%), Positives = 175/292 (59%), Gaps = 17/292 (5%)
Query: 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTL 81
++I+I SD HLGY E+D +DS+ +FEEIL A + VD+VL GGDLFH N+PS + L
Sbjct: 1 MKILITSDNHLGYRESDPVLLDDSYDTFEEILGIAQRERVDLVLQGGDLFHENRPSRSCL 60
Query: 82 KKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGP 141
+ + R+YCIG+ + + N +N+ D N+ IS+PV +I+GNHDDPSG
Sbjct: 61 NRTIGLFRRYCIGN---------ERSGLRSNLALNFHDQNIGISIPVVSIHGNHDDPSGI 111
Query: 142 ELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVKDERLCNMIKH 201
+V+ +DI+ ++GLVNY GK ++ I + PL+++K E +VAI+GLG++KD RL M
Sbjct: 112 SMVSPIDILQSAGLVNYIGKYNLIDRIDVYPLLLEK-EYRVAIYGLGHIKDRRLYRMFCE 170
Query: 202 NKVKYMKPTDDKDIIYILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHEHECRIKPEYN 261
++ + +P D +L+LHQNR R ++ + D + FF I++GHEHE +
Sbjct: 171 GRIVFHRPEDYDSWYNVLILHQNRIPR-EKEHFSSDLVEGFFDLIVYGHEHESMV----- 224
Query: 262 TKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPRSLETVRPFV 313
K + QPGS V TSLC GE K IL ++ L L +VRP +
Sbjct: 225 VKGDCLILQPGSTVRTSLCEGERHDKYAYILRIGEE-CTLEHVKLRSVRPLL 275
>sp|Q8U1N9|MRE11_PYRFU DNA double-strand break repair protein Mre11 OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=mre11
PE=1 SV=2
Length = 426
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 88/313 (28%), Positives = 131/313 (41%), Gaps = 72/313 (23%)
Query: 28 SDIHLGYLETDRERGNDSFV-SFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLE 86
+DIHLGY + + + + F +F+ LE A+ + VD +L+ GDLFH ++PSP TLKK +
Sbjct: 7 ADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDLFHSSRPSPGTLKKAIA 66
Query: 87 TLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS-GPELVA 145
L+ + +H S+PVF I GNHD GP +
Sbjct: 67 LLQ--------------------IPKEH----------SIPVFAIEGNHDRTQRGP---S 93
Query: 146 ALDIVSNSGLVNYFG----KCTN---LNEITLNPLIIQKNETK-VAIFGLGYVKDERLCN 197
L+++ + GLV G K N +E N + K K + I G+ Y+
Sbjct: 94 VLNLLEDFGLVYVIGMRKEKVENEYLTSERLGNGEYLVKGVYKDLEIHGMKYMS----SA 149
Query: 198 MIKHNK---VKYMKPTDDKDIIYILVLHQNRPERGTVKN-----IAEDSIPSFFHFILWG 249
+ NK + +PTD+ IL+LHQ E + I +P + + G
Sbjct: 150 WFEANKEILKRLFRPTDNA----ILMLHQGVREVSEARGEDYFEIGLGDLPEGYLYYALG 205
Query: 250 HEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILM-----CNKQNY---KL 301
H H+ R + Y+ V PGS E + GI NK Y
Sbjct: 206 HIHK-RYETSYSGSP---VVYPGSLERWDFGDYEVRYEWDGIKFKERYGVNKGFYIVEDF 261
Query: 302 VPRSLE-TVRPFV 313
PR +E VRPF+
Sbjct: 262 KPRFVEIKVRPFI 274
>sp|O29231|MRE11_ARCFU DNA double-strand break repair protein Mre11 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=mre11 PE=3 SV=1
Length = 443
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 113/264 (42%), Gaps = 68/264 (25%)
Query: 28 SDIHLGYLETDR-ERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLE 86
+D+HLGY + ++ R D +F+ I E+A++ D V++ GDLFH + PSP T+K+ +E
Sbjct: 7 ADVHLGYEQYNQPWRAEDFAKAFKVIAEKAVESNADFVVIAGDLFHRSLPSPRTIKEAVE 66
Query: 87 TLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAA 146
TL +M NI PVF + GNHD S ++A
Sbjct: 67 TL----------------------------WMFRKENI--PVFAVEGNHDKTSRD--ISA 94
Query: 147 LDIVSNSGLVNYFG------KCTNLNEITL-NPLIIQKNETKVAIFGLGYVKDERLCNMI 199
++ + GL+N G + N+ + + N +++ V I G D
Sbjct: 95 YHLLESLGLLNVLGLRRNPVRGENVESLRIQNVYLVKGVVDDVEILG-----DRHRSKWQ 149
Query: 200 KHNKVKYMKPTDDKDIIYILVLHQNRPE----------RGTVKNIAEDSIPSFFHFILWG 249
+ +KP DK +LVLHQ E T+ ++ E S +F G
Sbjct: 150 LEKVLPLLKPQSDKS---VLVLHQAVKEVVDIDLDMAYELTINDLPEASYYAF------G 200
Query: 250 HEHECRIKPEYNTKQRFHVCQPGS 273
H H +I E++ K + PGS
Sbjct: 201 HIHLPKIY-EFDGKA---IAYPGS 220
>sp|Q9UZC9|MRE11_PYRAB DNA double-strand break repair protein Mre11 OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=mre11 PE=3 SV=2
Length = 415
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 104/227 (45%), Gaps = 47/227 (20%)
Query: 22 IRIMIASDIHLGYLETDRERGNDSFV-SFEEILEQALDQEVDMVLLGGDLFHINKPSPTT 80
I+ +D+HLGY + +R + + F +FE+ ++ +D++VD +++ GDLF+ ++PSP T
Sbjct: 3 IKFAHLADVHLGYEQFNRSQRAEEFAKAFEDAIKICVDEKVDFIVIAGDLFNSSRPSPGT 62
Query: 81 LKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS- 139
+K ++ L+ P N ++PVF I GNHD
Sbjct: 63 IKTAVKILQI-----------------------------PRDN-NIPVFAIEGNHDRTQR 92
Query: 140 GPELVAALDIVSNSGLVNYFG-KCTN---LNEITLNPLIIQKNETKVAIFGLGYVKDERL 195
GP ++ L+ + ++ K N +E T +++ V I G+ Y+
Sbjct: 93 GPSILHLLEDLGLLYVLGVRDEKVENEYLTSEKTKAGWLVKGMYKDVEIHGMKYMSAAWF 152
Query: 196 CNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTVKNIAEDSIPSF 242
I+ K + +P D ILVLHQ V+ I E++ P++
Sbjct: 153 EGNIELFKSMF-RPEGDA----ILVLHQG------VREITENNYPNY 188
>sp|Q8PUY5|MRE11_METMA DNA double-strand break repair protein Mre11 OS=Methanosarcina
mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM
11833 / OCM 88) GN=mre11 PE=3 SV=1
Length = 617
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 34/145 (23%)
Query: 22 IRIMIASDIHLGYLETDRE-RGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTT 80
IRI+ +D HLGY + E R D F +FE +++ A+D +VD V+ GDLF P T
Sbjct: 5 IRILHTADTHLGYRQYHSEVRRQDFFKAFETVIKDAVDMQVDAVVHAGDLFDSRNP---T 61
Query: 81 LKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSG 140
L+ LET+ +V+S +L + N +P F I GNH+
Sbjct: 62 LEDLLETM------------NVLS--RLKVAN-------------IPFFGIVGNHESKQS 94
Query: 141 PELVAALDIVSNSGLVNYFGKCTNL 165
+ LD+ GL GK +
Sbjct: 95 TQW---LDLFEEMGLAGRLGKAPKM 116
>sp|Q8TRL2|MRE11_METAC DNA double-strand break repair protein Mre11 OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=mre11 PE=3 SV=1
Length = 614
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 64/145 (44%), Gaps = 34/145 (23%)
Query: 22 IRIMIASDIHLGYLETDRE-RGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTT 80
IRI+ +D HLGY + E R D F +FE +++ A+D +VD V+ GDLF P T
Sbjct: 5 IRILHTADTHLGYRQYHSEVRRQDFFKAFETVIQDAVDMQVDAVVHAGDLFDSRNP---T 61
Query: 81 LKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSG 140
L+ LET+ +++S K V +P F I GNH+
Sbjct: 62 LEDLLETM------------NILSRLKAV---------------DIPFFGIVGNHESKQN 94
Query: 141 PELVAALDIVSNSGLVNYFGKCTNL 165
+ LD+ GL GK L
Sbjct: 95 TQW---LDLFEEMGLAERLGKTPKL 116
>sp|O58686|MRE11_PYRHO DNA double-strand break repair protein Mre11 OS=Pyrococcus
horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 /
NBRC 100139 / OT-3) GN=mre11 PE=3 SV=1
Length = 413
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 97/221 (43%), Gaps = 47/221 (21%)
Query: 28 SDIHLGYLETDRERGNDSFV-SFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLE 86
+D+HLGY + ++ + + F +F++ LE + + VD +++ GDLF+ ++PSP T+K ++
Sbjct: 7 ADVHLGYEQFNKPQRAEEFANTFKKALEMCVKESVDFIIIAGDLFNSSRPSPGTIKTAIK 66
Query: 87 TLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS-GPELVA 145
L+ P N ++PVF I GNHD GP ++
Sbjct: 67 LLQI-----------------------------PKEN-NIPVFAIEGNHDRTQRGPSVLH 96
Query: 146 ALDIVSNSGLVNYFGKCTN----LNEITLNPLIIQKNETKVAIFGLGYVKDERLCNMIKH 201
L+ + ++ + +E N +++ + I G+ Y+ +
Sbjct: 97 LLEDLGLLYVIGLRQERVENEYLTSERVGNYWLVKGVYDNLEIHGMKYMSSAWFEANLNF 156
Query: 202 NKVKYMKPTDDKDIIYILVLHQNRPERGTVKNIAEDSIPSF 242
K +P +D ILVLHQ +++I E PS+
Sbjct: 157 FK-GIFRPDEDA----ILVLHQG------IRDITEKVFPSY 186
>sp|P62132|MRE11_NANEQ DNA double-strand break repair protein Mre11 OS=Nanoarchaeum
equitans (strain Kin4-M) GN=mre11 PE=3 SV=1
Length = 361
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 126/301 (41%), Gaps = 60/301 (19%)
Query: 24 IMIASDIHLGYLETDRERGND-SFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLK 82
I SD+HLG + +++ + S+ + +I E+ L+ + D+VL+GGD+F NK S +
Sbjct: 2 IAFISDLHLGNIYANKKETEEHSYNALAKIEEKLLEYQPDLVLVGGDIFDKNKVSGKEI- 60
Query: 83 KCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHD------ 136
VFID I N M+ N ++ V +I+GNHD
Sbjct: 61 --------------GVFIDFI------------NKMNKN---NIGVVSISGNHDGKYWLK 91
Query: 137 ---DPSGPELVAALDIVSNSGLVNY-FGKCTNLNEITLNPLIIQKNETKVAIFGLGYVKD 192
D + P ++ I +G Y F N L + +++ ++I G +
Sbjct: 92 ESFDHAIPYILYKSGINPENGYEYYSFAGIYLKNSRDWKTLSMIEDKYDISIVGFSFYTK 151
Query: 193 ERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHEH 252
+RL + +Y+ D + YIL++HQ+ A D + + L+GH H
Sbjct: 152 DRLPEL-----YEYLSIIDREKSDYILLMHQSLKSLLPQDPAAIDLTIENYKYALFGHMH 206
Query: 253 ECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPRSLETVRPF 312
K + V P P + SL EA +K G + +K K V +E RPF
Sbjct: 207 MKY------YKDKIIVTPP--PYSISL--KEANTEK-GFWLIDK---KPVFVPIEDSRPF 252
Query: 313 V 313
+
Sbjct: 253 I 253
>sp|D4GUK0|MRE11_HALVD DNA double-strand break repair protein Mre11 OS=Haloferax volcanii
(strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 /
NCIMB 2012 / VKM B-1768 / DS2) GN=mre11 PE=1 SV=1
Length = 441
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 66/173 (38%), Gaps = 47/173 (27%)
Query: 23 RIMIASDIHLGYLETDR-ERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTL 81
R++ D HLGY + ER D +FE ++ ALD +VD V+ GDL+H +P L
Sbjct: 3 RVIHTGDTHLGYQQYHSPERRQDFLDAFERVVADALDGDVDAVVHAGDLYHDRRPELPDL 62
Query: 82 KKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGP 141
L LR+ + +P I GNH+ G
Sbjct: 63 LGTLAALRRLD------------------------------DAGIPFLAIVGNHESTRGG 92
Query: 142 ELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVKDER 194
+ LD+ GL G+ +P ++ VA +GL +V R
Sbjct: 93 QW---LDLFERLGLATRLGR---------DPHVVG----GVAFYGLDHVPRSR 129
>sp|Q96YR6|MRE11_SULTO DNA double-strand break repair protein Mre11 OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=mre11 PE=3 SV=1
Length = 387
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 94/245 (38%), Gaps = 64/245 (26%)
Query: 23 RIMIASDIHLGYLETDRE-RGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTL 81
+I+ SD HLG + + + R D + +F ++++ A+ + VD ++ GDLF IN P
Sbjct: 5 QILHISDTHLGKRQYNLDFREQDVYDTFSQLIDIAIKEHVDGIIHTGDLFDINDPPNKAE 64
Query: 82 KKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGP 141
+ L++ +P I G+HD P
Sbjct: 65 IVAIRELKRLK------------------------------EAGIPFIVIAGDHDSPKKF 94
Query: 142 ELVAALDIVSNSGLVNYFGKCTN---LNEITLNPLIIQKNETKVAIFGLGYVKD---ERL 195
+ I+ L+ + K L EIT I+G+ +V + ERL
Sbjct: 95 TAIYPQKILEEFDLIKFLSKPDTPYKLGEIT--------------IYGISHVPNVAKERL 140
Query: 196 CNMIKHNKVKYMKPTDDKDIIYILVLHQN----RPERGTVKNIAEDSIPSFFHFILWGHE 251
++ +KP + K IL+LHQ P G + I D +P F + GH
Sbjct: 141 KELLSR-----LKPENKKS---ILLLHQGLKEVLPYEGAWQ-IQIDDLPKAFSYYALGHF 191
Query: 252 HECRI 256
H R+
Sbjct: 192 HTRRV 196
>sp|Q9YFY8|MRE11_AERPE DNA double-strand break repair protein Mre11 OS=Aeropyrum pernix
(strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138
/ K1) GN=mre11 PE=3 SV=1
Length = 409
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/288 (20%), Positives = 102/288 (35%), Gaps = 59/288 (20%)
Query: 23 RIMIASDIHLGYLETD-RERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTL 81
+++ +D+HLG ER +D F SFE ++E AL D VL+ GDLF K +
Sbjct: 3 KVLHVADVHLGARPYGLEERRDDIFRSFEFVVETALKDRPDAVLIAGDLFDKPKLPLRDV 62
Query: 82 KKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGP 141
K+ +E +R + +PV +G HD PS
Sbjct: 63 KQAVELVRALT------------------------------DAGIPVLAAHGEHDTPS-- 90
Query: 142 ELVAALDIVSNSGLVNYF-----GKCTNLNEITLNP--LIIQKNETKVAIFGLGYVKDER 194
V + L++ G L + P ++ KVA+ V E
Sbjct: 91 --------VRDETLLSLMEASLDGFKAPLYRSGMRPGDFVVDLGSLKVAVVPFFKVPLEE 142
Query: 195 LCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTVKNIAEDS-IPSFFHFILWGHEHE 253
+ ++ + + +L+ H + +A S +PS + GH H
Sbjct: 143 RRRLTLRFLREFDQISRTSSGTLVLLAHMSLDAEMQFDAVASPSDLPSGAKYAALGHLHA 202
Query: 254 CRIKPEYNTKQRF----------HVCQPGSPVATSLCAGEAVQKKCGI 291
RI+ + T + + PGSP+ L + +K +
Sbjct: 203 PRIRLDAPTPYAYPGVLDPLKVEEINTPGSPLYVDLSGDAPIIEKVKV 250
>sp|Q8NKQ0|MRE11_SULAC DNA double-strand break repair protein Mre11 OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=mre11 PE=3 SV=1
Length = 382
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/239 (21%), Positives = 96/239 (40%), Gaps = 52/239 (21%)
Query: 22 IRIMIASDIHLGYLETDRE-RGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTT 80
++++ SD HLG + + E R D + +F ++++ A+++ V V+ GDLF +N P
Sbjct: 1 MQLLHISDTHLGKRQYNLESREKDVYDTFTQLIDIAINEHVKAVIHTGDLFDVNNPPNRA 60
Query: 81 LKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSG 140
++ L++ DH ++P I G+HD P
Sbjct: 61 KLHAIKELKR--------------------LKDH----------NIPFICIAGDHDSPKR 90
Query: 141 PELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVKDERLCNMIK 200
E + I+ L+ K N ++ V ++G+ ++ + + ++
Sbjct: 91 KEEIYPQRILEEFNLIKILQKIDNRVKL-----------ENVEVYGISHISNVSVNDL-- 137
Query: 201 HNKVKYMKPTDDKDIIYILVLHQN----RPERGTVKNIAEDSIPSFFHFILWGHEHECR 255
++ +KP K IL+LHQ P +G + I +P F GH H R
Sbjct: 138 KEQLSKVKPETRKS---ILMLHQGIRTYLPYQGAWQ-IELSDLPKGFSLYAVGHLHSRR 192
>sp|Q8TXI3|MRE11_METKA DNA double-strand break repair protein Mre11 OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=mre11 PE=3 SV=1
Length = 451
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 92/236 (38%), Gaps = 41/236 (17%)
Query: 22 IRIMIASDIHLGY-LETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTT 80
+R+ +D+HLG+ L R R +FE ++E+ + VD++++ GDLF +P
Sbjct: 1 MRMAHVADVHLGHALMNLRSREEAVMETFERLMEEVRECSVDVLVIAGDLFEHARPKTEA 60
Query: 81 LKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSG 140
L +E L + + D V + GNH+
Sbjct: 61 LYLAVEKLSE-------------------LKEDGVE-----------IVATAGNHEIRRR 90
Query: 141 PELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVKDERLCNMIK 200
V+ + ++ GLV + E + + +V GL Y+ K
Sbjct: 91 KGAVSPISVLERMGLVRHLYYSERRPE--RHRYTATFDGVRVTFHGLQYLPKNSFVERAK 148
Query: 201 HNKVKYMKPTDDKDIIYILVLHQNRPERGTVKNIAEDSIPSFF----HFILWGHEH 252
+ KY +P + D + + + HQ P GT+ + +E P++F + GH H
Sbjct: 149 VIRAKY-RPDPEAD-VNVAIFHQALP--GTIPDESEIVEPAYFPEGHDYYAMGHVH 200
>sp|P23479|SBCD_BACSU Nuclease SbcCD subunit D OS=Bacillus subtilis (strain 168) GN=sbcD
PE=3 SV=5
Length = 391
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 107/295 (36%), Gaps = 76/295 (25%)
Query: 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTL 81
+RI+ +D HLG R R ++ +E+ D+++D +++ GD F P
Sbjct: 1 MRILHTADWHLGKTLEGRSRLSEQADVLDELNTIVKDEQIDAIVMAGDAFDTVNPPALAE 60
Query: 82 KKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGP 141
+ E+L + DR P+ I GNHD+P
Sbjct: 61 QLFYESLS--ALSDRG---------------------------KRPIVVIAGNHDNPD-- 89
Query: 142 ELVAALDIVSNSG--LVNYFGKCTNLNEITLNPLIIQKNETK--VAIFGLGYVKDERLCN 197
L AA + +G L+ Y T P+ I+ +A+ L Y + RL
Sbjct: 90 RLSAASPLTHENGIHLIGY---------PTTEPIHIEVPSAGELLAVGALAYPSEARLNE 140
Query: 198 MIK----------HNKVK------YMKPTDDKDIIYILVLH----------QNRP-ERGT 230
++ H VK +M D + I H RP E G
Sbjct: 141 VLSDTFDEKLLRDHYDVKIRQAFEHMTSRFRTDAVKIAASHIYVAGGNQTDSERPIEVGG 200
Query: 231 VKNIAEDSIPSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLC-AGEA 284
+A +S+P+ ++ GH H +P+ + R GSP+A S AG A
Sbjct: 201 AYTVAAESLPADAAYVALGHLH----RPQTIKRARTLARYSGSPLAYSFSEAGYA 251
>sp|Q97WG9|MRE11_SULSO DNA double-strand break repair protein Mre11 OS=Sulfolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 /
P2) GN=mre11 PE=3 SV=1
Length = 381
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 101/236 (42%), Gaps = 53/236 (22%)
Query: 22 IRIMIASDIHLGYLETDR-ERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTT 80
++I+ SD HLG + ER D + F ++++ A+ + VD+++ GDLF ++ P+
Sbjct: 2 VQILHISDTHLGKRQYSLVEREKDIYDIFSQLVDIAIKEHVDVIIHSGDLFDVSSPTTNA 61
Query: 81 LKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSG 140
L ++ L++ ++++P +I G+HD P
Sbjct: 62 LVMAIKILKRLK------------------------------DVNIPFLSIPGDHDTPKR 91
Query: 141 PELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVKDERLCNMIK 200
+ +I+S L+ K N + P II+ + ++G+ ++ + I
Sbjct: 92 KGYLIPHNILSELDLI----KILNYEK----PYIIK----GIEVYGIPHI--PTVSKSIL 137
Query: 201 HNKVKYMKPTDDKDIIYILVLHQN----RPERGTVKNIAEDSIPSFFHFILWGHEH 252
+ + ++P + IL+LHQ P G+ + + S+P F + GH H
Sbjct: 138 VSALSALRPKSSRS---ILLLHQGVKQILPYDGSWQ-MELGSLPKGFGYYALGHIH 189
>sp|Q97C75|MRE11_THEVO DNA double-strand break repair protein Mre11 OS=Thermoplasma
volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 /
NBRC 15438 / GSS1) GN=mre11 PE=3 SV=1
Length = 374
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 31/118 (26%)
Query: 22 IRIMIASDIHLGYLE-TDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTT 80
+R + SD H+G T ER D + +F+E +E A+D++VD ++ GDLF P +
Sbjct: 2 VRFLHMSDTHIGAKSLTIEEREQDYYDTFQEAVEIAIDEKVDFIIHSGDLFDTWIPGNRS 61
Query: 81 LKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDP 138
+K VF D ++ ND +PVF + G+HD P
Sbjct: 62 MK---------------VFRDA-----MMKLNDR----------QIPVFYVFGDHDRP 89
>sp|P62131|MRE11_METMP DNA double-strand break repair protein Mre11 OS=Methanococcus
maripaludis (strain S2 / LL) GN=mre11 PE=3 SV=1
Length = 372
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 96/243 (39%), Gaps = 63/243 (25%)
Query: 28 SDIHLGYLETD-RERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLE 86
+D HLGY + + ER ND + SF E +++ ++ D V+ GDLF +P ++ +E
Sbjct: 7 ADNHLGYRQYNLDERENDIYESFLECIDKIIEIRPDFVIHSGDLFESPQPPVNAIRCAME 66
Query: 87 TLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDP----SGPE 142
L K + ++++ P++ I+GNHD P G
Sbjct: 67 GLLK--LKEKNI----------------------------PIYLIHGNHDIPKSQQKGKP 96
Query: 143 LVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVKDERL------C 196
I+ NS L FGK N + NE V I G+ YV ++
Sbjct: 97 FGLLKKILGNSLLT--FGK---------NKSHVFNNE--VFIGGIEYVSQNKIPKTYEDL 143
Query: 197 NMIKHNKVKYMKPTDDKDIIYILVLHQN-RPERGTVKNIAEDSIPSFFHFILWGHEHECR 255
I + Y K IL+ HQ+ P + P F++I GH H+
Sbjct: 144 EKINSDSKNYKKK--------ILLFHQSVNPFIPQSFEMQVTDFPDDFNYIAGGHIHQRA 195
Query: 256 IKP 258
+KP
Sbjct: 196 LKP 198
>sp|Q9HRW4|MRE11_HALSA DNA double-strand break repair protein Mre11 OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
GN=mre11 PE=3 SV=1
Length = 387
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 23 RIMIASDIHLGYLETDR-ERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTL 81
R++ D HLGY + +R D +F+ ++ A+D+ VD V+ GDL+H +P L
Sbjct: 3 RVIHTGDTHLGYQQYHAPQRRQDFLDAFDAVITDAIDEGVDAVVHAGDLYHDRQPG---L 59
Query: 82 KKCLETL 88
+ L+T+
Sbjct: 60 RDILDTI 66
>sp|O26641|MRE11_METTH DNA double-strand break repair protein Mre11 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=mre11 PE=3 SV=1
Length = 587
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 28 SDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLET 87
SD HLG + R F +F L+ AL ++VD +++ GDLFH N P+ T+K+
Sbjct: 177 SDCHLGAQKHPDLR-ELEFEAFRMALDDALQKDVDFMIIAGDLFHSNIPNMETVKRATLE 235
Query: 88 LRK 90
LR+
Sbjct: 236 LRR 238
>sp|Q9HLR7|MRE11_THEAC DNA double-strand break repair protein Mre11 OS=Thermoplasma
acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 /
NBRC 15155 / AMRC-C165) GN=mre11 PE=3 SV=1
Length = 376
Score = 38.1 bits (87), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 33/116 (28%)
Query: 25 MIASDIHLGYLE-TDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKK 83
M SD H+GY T ER D + +F E ++ AL+ VD V+ GDLF P +++
Sbjct: 1 MHFSDTHIGYRSLTLDEREQDFYDAFHEAIDIALENSVDFVIHTGDLFDTWVPGNRAIRE 60
Query: 84 CLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNI-SLPVFTINGNHDDP 138
+ K LN ++P+F I G+HD P
Sbjct: 61 FRNAVMK-------------------------------LNARNIPIFVIFGDHDRP 85
>sp|P0AG76|SBCD_ECOLI Nuclease SbcCD subunit D OS=Escherichia coli (strain K12) GN=sbcD
PE=1 SV=1
Length = 400
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 22 IRIMIASDIHLG--YLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKP 76
+RI+ SD HLG + RE + +F+ + +LE A +VD +++ GD+F P
Sbjct: 1 MRILHTSDWHLGQNFYSKSREAEHQAFLDW--LLETAQTHQVDAIIVAGDVFDTGSP 55
>sp|P0AG77|SBCD_ECO57 Nuclease SbcCD subunit D OS=Escherichia coli O157:H7 GN=sbcD PE=3
SV=1
Length = 400
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 22 IRIMIASDIHLG--YLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKP 76
+RI+ SD HLG + RE + +F+ + +LE A +VD +++ GD+F P
Sbjct: 1 MRILHTSDWHLGQNFYSKSREAEHQAFLDW--LLETAQTHQVDAIIVAGDVFDTGSP 55
>sp|A5GLK1|CPDA_SYNPW 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA
OS=Synechococcus sp. (strain WH7803) GN=cpdA PE=3 SV=1
Length = 265
Score = 36.2 bits (82), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 23 RIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFH 72
R++ SD HL R RG + F++ L QAL ++ D++L+ GD H
Sbjct: 3 RLIQLSDPHLVARAEGRVRGRSALSLFQKALAQALQEQPDLLLVTGDCCH 52
>sp|Q58719|MRE11_METJA DNA double-strand break repair protein Mre11 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=mre11 PE=1 SV=1
Length = 366
Score = 35.8 bits (81), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 28 SDIHLGYLE---TDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKC 84
+D HLGY + DRE+ D + SF+ +++ L+ + D+VL GDLF+ +P L+
Sbjct: 7 ADNHLGYRQYNLDDREK--DIYDSFKLCIKKILEIKPDVVLHSGDLFNDLRPPVKALRIA 64
Query: 85 LETLRKYCIGDRSVFI 100
++ +K + V+I
Sbjct: 65 MQAFKKLHENNIKVYI 80
>sp|Q49XE0|SBCD_STAS1 Nuclease SbcCD subunit D OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=sbcD
PE=3 SV=1
Length = 376
Score = 35.4 bits (80), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 51/115 (44%), Gaps = 29/115 (25%)
Query: 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTL 81
++I+ +D HLG + + D ++ +E ++ D++++ GDL+ + P+ +
Sbjct: 1 MKIIHTADWHLGRILNGKSLLEDQAYILDKFIEAMKLEQPDVIVIAGDLYDTSYPNKDAI 60
Query: 82 KKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHD 136
+ +T ID++ NL +S+P+ INGNHD
Sbjct: 61 QLLEQT------------IDIL-----------------NLEMSIPLIMINGNHD 86
>sp|Q7A5S7|SBCD_STAAN Nuclease SbcCD subunit D OS=Staphylococcus aureus (strain N315)
GN=sbcD PE=3 SV=1
Length = 373
Score = 34.7 bits (78), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 29/115 (25%)
Query: 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTL 81
++I+ +D HLG + ++ D + +E+ ++E D++++ GDL+ PS +
Sbjct: 1 MKIIHTADWHLGKILNGKQLLEDQAYILDMFVEKMKEEEPDIIVIAGDLYDTTYPSKDAI 60
Query: 82 KKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHD 136
L + IG KL NL + +P+ I+GNHD
Sbjct: 61 -----MLLEQAIG------------KL------------NLELRIPIIMISGNHD 86
>sp|Q99UD1|SBCD_STAAM Nuclease SbcCD subunit D OS=Staphylococcus aureus (strain Mu50 /
ATCC 700699) GN=sbcD PE=3 SV=1
Length = 373
Score = 34.7 bits (78), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 29/115 (25%)
Query: 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTL 81
++I+ +D HLG + ++ D + +E+ ++E D++++ GDL+ PS +
Sbjct: 1 MKIIHTADWHLGKILNGKQLLEDQAYILDMFVEKMKEEEPDIIVIAGDLYDTTYPSKDAI 60
Query: 82 KKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHD 136
L + IG KL NL + +P+ I+GNHD
Sbjct: 61 -----MLLEQAIG------------KL------------NLELRIPIIMISGNHD 86
>sp|A5ISM8|SBCD_STAA9 Nuclease SbcCD subunit D OS=Staphylococcus aureus (strain JH9)
GN=sbcD PE=3 SV=1
Length = 373
Score = 34.7 bits (78), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 29/115 (25%)
Query: 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTL 81
++I+ +D HLG + ++ D + +E+ ++E D++++ GDL+ PS +
Sbjct: 1 MKIIHTADWHLGKILNGKQLLEDQAYILDMFVEKMKEEEPDIIVIAGDLYDTTYPSKDAI 60
Query: 82 KKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHD 136
L + IG KL NL + +P+ I+GNHD
Sbjct: 61 -----MLLEQAIG------------KL------------NLELRIPIIMISGNHD 86
>sp|A6U1G6|SBCD_STAA2 Nuclease SbcCD subunit D OS=Staphylococcus aureus (strain JH1)
GN=sbcD PE=3 SV=1
Length = 373
Score = 34.7 bits (78), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 29/115 (25%)
Query: 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTL 81
++I+ +D HLG + ++ D + +E+ ++E D++++ GDL+ PS +
Sbjct: 1 MKIIHTADWHLGKILNGKQLLEDQAYILDMFVEKMKEEEPDIIVIAGDLYDTTYPSKDAI 60
Query: 82 KKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHD 136
L + IG KL NL + +P+ I+GNHD
Sbjct: 61 -----MLLEQAIG------------KL------------NLELRIPIIMISGNHD 86
>sp|A7X202|SBCD_STAA1 Nuclease SbcCD subunit D OS=Staphylococcus aureus (strain Mu3 /
ATCC 700698) GN=sbcD PE=3 SV=1
Length = 373
Score = 34.7 bits (78), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 29/115 (25%)
Query: 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTL 81
++I+ +D HLG + ++ D + +E+ ++E D++++ GDL+ PS +
Sbjct: 1 MKIIHTADWHLGKILNGKQLLEDQAYILDMFVEKMKEEEPDIIVIAGDLYDTTYPSKDAI 60
Query: 82 KKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHD 136
L + IG KL NL + +P+ I+GNHD
Sbjct: 61 -----MLLEQAIG------------KL------------NLELRIPIIMISGNHD 86
>sp|Q8NWV2|SBCD_STAAW Nuclease SbcCD subunit D OS=Staphylococcus aureus (strain MW2)
GN=sbcD PE=3 SV=1
Length = 373
Score = 34.7 bits (78), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 29/115 (25%)
Query: 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTL 81
++I+ +D HLG + ++ D + +E+ ++E D++++ GDL+ PS +
Sbjct: 1 MKIIHTADWHLGKILNGKQLLEDQAYILDMFVEKMKEEEPDIIVIAGDLYDTTYPSKDAI 60
Query: 82 KKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHD 136
L + IG KL NL + +P+ I+GNHD
Sbjct: 61 -----MLLEQAIG------------KL------------NLELRIPIIIISGNHD 86
>sp|P0C7L6|SBCD_STAAT Nuclease SbcCD subunit D OS=Staphylococcus aureus (strain USA300 /
TCH1516) GN=sbcD PE=3 SV=1
Length = 373
Score = 34.7 bits (78), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 29/115 (25%)
Query: 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTL 81
++I+ +D HLG + ++ D + +E+ ++E D++++ GDL+ PS +
Sbjct: 1 MKIIHTADWHLGKILNGKQLLEDQAYILDMFVEKMKEEEPDIIVIAGDLYDTTYPSKDAI 60
Query: 82 KKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHD 136
L + IG KL NL + +P+ I+GNHD
Sbjct: 61 -----MLLEQAIG------------KL------------NLELRIPIIIISGNHD 86
>sp|Q6G9L3|SBCD_STAAS Nuclease SbcCD subunit D OS=Staphylococcus aureus (strain MSSA476)
GN=sbcD PE=3 SV=1
Length = 373
Score = 34.7 bits (78), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 29/115 (25%)
Query: 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTL 81
++I+ +D HLG + ++ D + +E+ ++E D++++ GDL+ PS +
Sbjct: 1 MKIIHTADWHLGKILNGKQLLEDQAYILDMFVEKMKEEEPDIIVIAGDLYDTTYPSKDAI 60
Query: 82 KKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHD 136
L + IG KL NL + +P+ I+GNHD
Sbjct: 61 -----MLLEQAIG------------KL------------NLELRIPIIIISGNHD 86
>sp|A6QGP7|SBCD_STAAE Nuclease SbcCD subunit D OS=Staphylococcus aureus (strain Newman)
GN=sbcD PE=1 SV=1
Length = 373
Score = 34.7 bits (78), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 29/115 (25%)
Query: 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTL 81
++I+ +D HLG + ++ D + +E+ ++E D++++ GDL+ PS +
Sbjct: 1 MKIIHTADWHLGKILNGKQLLEDQAYILDMFVEKMKEEEPDIIVIAGDLYDTTYPSKDAI 60
Query: 82 KKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHD 136
L + IG KL NL + +P+ I+GNHD
Sbjct: 61 -----MLLEQAIG------------KL------------NLELRIPIIIISGNHD 86
>sp|Q5HG73|SBCD_STAAC Nuclease SbcCD subunit D OS=Staphylococcus aureus (strain COL)
GN=sbcD PE=3 SV=1
Length = 373
Score = 34.7 bits (78), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 29/115 (25%)
Query: 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTL 81
++I+ +D HLG + ++ D + +E+ ++E D++++ GDL+ PS +
Sbjct: 1 MKIIHTADWHLGKILNGKQLLEDQAYILDMFVEKMKEEEPDIIVIAGDLYDTTYPSKDAI 60
Query: 82 KKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHD 136
L + IG KL NL + +P+ I+GNHD
Sbjct: 61 -----MLLEQAIG------------KL------------NLELRIPIIIISGNHD 86
>sp|Q2FYT4|SBCD_STAA8 Nuclease SbcCD subunit D OS=Staphylococcus aureus (strain NCTC
8325) GN=sbcD PE=1 SV=1
Length = 373
Score = 34.7 bits (78), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 29/115 (25%)
Query: 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTL 81
++I+ +D HLG + ++ D + +E+ ++E D++++ GDL+ PS +
Sbjct: 1 MKIIHTADWHLGKILNGKQLLEDQAYILDMFVEKMKEEEPDIIVIAGDLYDTTYPSKDAI 60
Query: 82 KKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHD 136
L + IG KL NL + +P+ I+GNHD
Sbjct: 61 -----MLLEQAIG------------KL------------NLELRIPIIIISGNHD 86
>sp|Q2FH89|SBCD_STAA3 Nuclease SbcCD subunit D OS=Staphylococcus aureus (strain USA300)
GN=sbcD PE=3 SV=1
Length = 373
Score = 34.7 bits (78), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 29/115 (25%)
Query: 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTL 81
++I+ +D HLG + ++ D + +E+ ++E D++++ GDL+ PS +
Sbjct: 1 MKIIHTADWHLGKILNGKQLLEDQAYILDMFVEKMKEEEPDIIVIAGDLYDTTYPSKDAI 60
Query: 82 KKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHD 136
L + IG KL NL + +P+ I+GNHD
Sbjct: 61 -----MLLEQAIG------------KL------------NLELRIPIIIISGNHD 86
>sp|Q2YXX1|SBCD_STAAB Nuclease SbcCD subunit D OS=Staphylococcus aureus (strain bovine
RF122 / ET3-1) GN=sbcD PE=3 SV=1
Length = 373
Score = 34.7 bits (78), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 29/115 (25%)
Query: 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTL 81
++I+ +D HLG + ++ D + +E+ ++E D++++ GDL+ PS +
Sbjct: 1 MKIIHTADWHLGKILNGKQLLEDQTYILDMFVEKMKEEEPDIIVIAGDLYDTTYPSKDAI 60
Query: 82 KKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHD 136
L + IG KL NL + +P+ I+GNHD
Sbjct: 61 -----MLLEQAIG------------KL------------NLELRIPIIMISGNHD 86
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,392,192
Number of Sequences: 539616
Number of extensions: 5303272
Number of successful extensions: 12229
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 12111
Number of HSP's gapped (non-prelim): 89
length of query: 313
length of database: 191,569,459
effective HSP length: 117
effective length of query: 196
effective length of database: 128,434,387
effective search space: 25173139852
effective search space used: 25173139852
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)