Query psy11941
Match_columns 313
No_of_seqs 138 out of 1730
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 22:53:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11941.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11941hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2310|consensus 100.0 3.6E-51 7.7E-56 384.3 23.2 295 19-313 11-309 (646)
2 TIGR00583 mre11 DNA repair pro 100.0 2.3E-50 4.9E-55 383.0 28.6 294 20-313 2-299 (405)
3 PRK10966 exonuclease subunit S 100.0 1.3E-32 2.9E-37 263.1 23.6 249 22-312 1-285 (407)
4 COG0420 SbcD DNA repair exonuc 100.0 3.2E-31 6.9E-36 253.7 21.6 250 22-309 1-264 (390)
5 PHA02546 47 endonuclease subun 100.0 5.8E-31 1.3E-35 247.2 22.8 227 22-312 1-237 (340)
6 TIGR00619 sbcd exonuclease Sbc 100.0 4.5E-29 9.7E-34 225.3 17.3 219 22-283 1-249 (253)
7 cd00840 MPP_Mre11_N Mre11 nucl 100.0 1.2E-27 2.6E-32 210.9 19.8 215 23-280 1-223 (223)
8 PRK11148 cyclic 3',5'-adenosin 99.9 2E-20 4.4E-25 171.0 16.2 227 19-308 12-263 (275)
9 cd07395 MPP_CSTP1 Homo sapiens 99.8 4.3E-18 9.4E-23 154.4 21.2 236 20-305 3-261 (262)
10 cd07385 MPP_YkuE_C Bacillus su 99.8 1E-18 2.3E-23 154.3 15.5 170 21-258 1-170 (223)
11 cd07402 MPP_GpdQ Enterobacter 99.8 2.3E-18 5E-23 153.8 17.5 190 23-276 1-212 (240)
12 PRK11340 phosphodiesterase Yae 99.8 3.5E-18 7.7E-23 155.9 16.0 171 18-257 46-217 (271)
13 cd07388 MPP_Tt1561 Thermus the 99.7 3E-17 6.6E-22 145.0 15.2 201 19-299 2-221 (224)
14 cd07400 MPP_YydB Bacillus subt 99.7 9.3E-18 2E-22 138.4 10.7 80 24-137 1-80 (144)
15 cd07396 MPP_Nbla03831 Homo sap 99.7 4.8E-17 1E-21 148.1 15.1 223 22-299 1-264 (267)
16 cd07383 MPP_Dcr2 Saccharomyces 99.7 2E-16 4.3E-21 137.8 14.1 86 21-136 2-87 (199)
17 PF12850 Metallophos_2: Calcin 99.7 1.1E-17 2.4E-22 139.1 5.9 155 22-297 1-156 (156)
18 cd07399 MPP_YvnB Bacillus subt 99.7 3.9E-15 8.4E-20 131.3 17.8 192 22-304 1-209 (214)
19 COG2129 Predicted phosphoester 99.7 3.2E-15 7E-20 129.4 15.7 198 20-304 2-224 (226)
20 PRK09453 phosphodiesterase; Pr 99.6 1.3E-15 2.9E-20 130.8 11.9 168 22-308 1-172 (182)
21 cd07392 MPP_PAE1087 Pyrobaculu 99.6 7.9E-16 1.7E-20 131.8 9.6 166 24-272 1-188 (188)
22 cd07393 MPP_DR1119 Deinococcus 99.6 9.3E-15 2E-19 130.4 16.1 81 24-139 1-85 (232)
23 cd07401 MPP_TMEM62_N Homo sapi 99.6 1.9E-14 4E-19 130.4 18.1 184 24-256 2-212 (256)
24 cd00841 MPP_YfcE Escherichia c 99.6 3E-15 6.6E-20 124.9 11.8 79 216-303 76-154 (155)
25 TIGR00040 yfcE phosphoesterase 99.6 3.5E-15 7.6E-20 125.2 12.0 77 216-300 79-156 (158)
26 cd07394 MPP_Vps29 Homo sapiens 99.6 1.7E-14 3.6E-19 123.7 15.4 89 216-308 79-168 (178)
27 COG1409 Icc Predicted phosphoh 99.6 6E-14 1.3E-18 128.2 16.0 80 22-140 1-80 (301)
28 PF00149 Metallophos: Calcineu 99.6 1.3E-15 2.7E-20 125.8 3.4 80 22-140 1-80 (200)
29 PRK05340 UDP-2,3-diacylglucosa 99.6 9E-14 1.9E-18 124.7 15.6 81 22-139 1-84 (241)
30 cd07378 MPP_ACP5 Homo sapiens 99.5 3.7E-13 7.9E-18 122.9 18.5 232 22-307 1-276 (277)
31 TIGR03729 acc_ester putative p 99.5 1.4E-13 3E-18 123.3 13.1 75 23-139 1-75 (239)
32 COG0622 Predicted phosphoester 99.5 2.6E-13 5.5E-18 115.1 13.5 166 21-308 1-167 (172)
33 cd00839 MPP_PAPs purple acid p 99.5 1.1E-12 2.5E-17 120.6 18.7 236 19-307 2-282 (294)
34 PF14582 Metallophos_3: Metall 99.5 6.5E-14 1.4E-18 121.1 8.2 207 21-302 5-253 (255)
35 KOG1432|consensus 99.5 6.2E-12 1.3E-16 114.5 18.8 244 16-297 48-351 (379)
36 COG1408 Predicted phosphohydro 99.4 1.9E-12 4.2E-17 118.4 12.8 82 17-142 40-122 (284)
37 cd07404 MPP_MS158 Microscilla 99.4 9.4E-13 2E-17 111.2 9.6 42 24-76 1-42 (166)
38 cd07379 MPP_239FB Homo sapiens 99.4 1.1E-12 2.5E-17 107.0 9.7 47 23-90 1-47 (135)
39 TIGR01854 lipid_A_lpxH UDP-2,3 99.4 2.6E-12 5.7E-17 114.5 11.7 77 25-139 2-82 (231)
40 cd07397 MPP_DevT Myxococcus xa 99.4 1.4E-11 3E-16 109.5 14.8 65 22-140 1-65 (238)
41 PTZ00422 glideosome-associated 99.3 1.3E-10 2.7E-15 110.0 18.9 241 17-305 22-315 (394)
42 cd07406 MPP_CG11883_N Drosophi 99.3 9E-11 2E-15 106.3 16.2 202 22-273 1-222 (257)
43 cd00845 MPP_UshA_N_like Escher 99.3 5.8E-11 1.3E-15 106.9 14.8 202 22-273 1-223 (252)
44 cd07384 MPP_Cdc1_like Saccharo 99.2 1.5E-10 3.2E-15 98.6 12.1 88 25-139 1-101 (171)
45 cd07386 MPP_DNA_pol_II_small_a 99.2 6.5E-10 1.4E-14 99.8 16.9 77 25-139 2-95 (243)
46 cd07410 MPP_CpdB_N Escherichia 99.2 1.7E-09 3.8E-14 98.9 18.2 204 22-273 1-246 (277)
47 cd07390 MPP_AQ1575 Aquifex aeo 99.2 2.5E-10 5.4E-15 96.9 11.6 77 25-139 2-83 (168)
48 cd00842 MPP_ASMase acid sphing 99.2 3.8E-10 8.3E-15 104.2 13.5 65 44-139 50-123 (296)
49 PRK04036 DNA polymerase II sma 99.2 1.9E-09 4.1E-14 106.5 18.8 83 19-139 241-344 (504)
50 COG2908 Uncharacterized protei 99.1 1.5E-10 3.3E-15 101.5 8.8 79 25-140 1-82 (237)
51 PLN02533 probable purple acid 99.1 7.8E-10 1.7E-14 107.1 14.7 183 17-256 135-336 (427)
52 cd07408 MPP_SA0022_N Staphyloc 99.1 8.3E-10 1.8E-14 100.0 13.9 210 22-273 1-231 (257)
53 cd07391 MPP_PF1019 Pyrococcus 99.1 1.4E-10 3.1E-15 98.7 8.4 84 25-139 1-89 (172)
54 cd07411 MPP_SoxB_N Thermus the 99.1 2.6E-09 5.7E-14 97.1 16.8 205 22-273 1-237 (264)
55 cd00838 MPP_superfamily metall 99.1 5.3E-10 1.1E-14 88.7 9.3 69 25-136 1-69 (131)
56 KOG2679|consensus 99.1 2.7E-09 5.9E-14 94.6 14.4 248 17-307 39-318 (336)
57 cd07405 MPP_UshA_N Escherichia 99.1 3.8E-09 8.3E-14 97.1 16.1 192 22-256 1-223 (285)
58 TIGR00024 SbcD_rel_arch putati 99.1 2.3E-10 4.9E-15 101.6 7.4 84 22-139 15-103 (225)
59 cd07412 MPP_YhcR_N Bacillus su 99.1 6.6E-09 1.4E-13 95.7 17.4 210 22-273 1-259 (288)
60 cd08163 MPP_Cdc1 Saccharomyces 99.1 4.6E-09 9.9E-14 95.1 15.3 60 50-140 34-99 (257)
61 cd07409 MPP_CD73_N CD73 ecto-5 99.0 3E-08 6.6E-13 91.0 17.5 190 22-256 1-220 (281)
62 cd07403 MPP_TTHA0053 Thermus t 99.0 2E-09 4.4E-14 87.3 7.6 33 25-71 1-33 (129)
63 PRK09418 bifunctional 2',3'-cy 98.9 1.1E-07 2.5E-12 97.8 20.4 58 18-75 36-98 (780)
64 cd08166 MPP_Cdc1_like_1 unchar 98.9 1E-08 2.2E-13 88.5 10.4 58 55-139 37-94 (195)
65 COG0737 UshA 5'-nucleotidase/2 98.9 8.1E-08 1.8E-12 95.5 17.4 219 17-273 22-267 (517)
66 cd08165 MPP_MPPE1 human MPPE1 98.9 3.9E-09 8.5E-14 88.5 6.8 87 25-139 1-90 (156)
67 cd07407 MPP_YHR202W_N Saccharo 98.8 7.6E-08 1.6E-12 88.3 13.1 57 19-75 3-65 (282)
68 PRK09558 ushA bifunctional UDP 98.8 1.4E-07 3E-12 94.5 15.1 191 18-256 31-259 (551)
69 PRK11907 bifunctional 2',3'-cy 98.8 4.2E-07 9.2E-12 93.8 18.5 58 19-76 113-175 (814)
70 cd08164 MPP_Ted1 Saccharomyces 98.8 1.4E-07 3.1E-12 81.2 12.8 33 49-81 32-65 (193)
71 PRK09419 bifunctional 2',3'-cy 98.8 3.1E-07 6.7E-12 99.4 18.3 204 20-273 659-897 (1163)
72 cd08162 MPP_PhoA_N Synechococc 98.7 1.4E-07 3.1E-12 87.8 12.8 48 22-75 1-53 (313)
73 PRK09420 cpdB bifunctional 2', 98.7 1.1E-06 2.5E-11 89.3 19.6 60 17-76 21-85 (649)
74 TIGR01390 CycNucDiestase 2',3' 98.7 3.9E-07 8.5E-12 92.4 16.2 56 21-76 2-62 (626)
75 PHA02239 putative protein phos 98.7 5.4E-08 1.2E-12 86.9 8.1 71 22-138 1-73 (235)
76 COG1407 Predicted ICC-like pho 98.6 7.4E-08 1.6E-12 84.9 7.2 88 21-140 19-112 (235)
77 PRK09419 bifunctional 2',3'-cy 98.6 9.9E-07 2.2E-11 95.5 17.1 56 20-75 40-100 (1163)
78 TIGR03767 P_acnes_RR metalloph 98.6 2.9E-06 6.4E-11 82.1 18.3 109 188-311 318-449 (496)
79 cd07398 MPP_YbbF-LpxH Escheric 98.6 9.1E-08 2E-12 83.9 6.7 78 25-139 1-83 (217)
80 TIGR01530 nadN NAD pyrophospha 98.6 1.2E-06 2.6E-11 87.7 15.4 191 22-255 1-219 (550)
81 cd07425 MPP_Shelphs Shewanella 98.5 3.3E-07 7.1E-12 80.5 7.1 73 25-139 1-81 (208)
82 COG4186 Predicted phosphoester 98.5 3.1E-06 6.7E-11 69.4 12.1 84 20-140 2-88 (186)
83 COG1311 HYS2 Archaeal DNA poly 98.5 2.3E-06 5E-11 82.0 13.2 86 17-140 221-323 (481)
84 PRK00166 apaH diadenosine tetr 98.5 2.8E-07 6.1E-12 84.1 6.8 68 22-138 1-69 (275)
85 cd00844 MPP_Dbr1_N Dbr1 RNA la 98.5 1E-06 2.2E-11 80.0 9.7 18 59-76 27-44 (262)
86 cd07423 MPP_PrpE Bacillus subt 98.4 5.2E-07 1.1E-11 80.6 6.9 52 22-85 1-62 (234)
87 cd07387 MPP_PolD2_C PolD2 (DNA 98.4 2.2E-05 4.8E-10 70.9 17.0 80 23-140 1-109 (257)
88 cd07424 MPP_PrpA_PrpB PrpA and 98.3 1.1E-06 2.4E-11 77.0 5.8 44 22-77 1-45 (207)
89 PRK13625 bis(5'-nucleosyl)-tet 98.3 1.5E-06 3.2E-11 78.3 6.8 54 22-87 1-63 (245)
90 KOG1378|consensus 98.2 1.5E-05 3.2E-10 76.4 12.0 183 18-257 144-347 (452)
91 PRK11439 pphA serine/threonine 98.2 1.9E-06 4.1E-11 76.2 5.2 53 18-82 13-66 (218)
92 cd00144 MPP_PPP_family phospho 98.2 2.8E-06 6.1E-11 74.9 6.3 69 25-139 1-69 (225)
93 COG1768 Predicted phosphohydro 98.2 1.1E-05 2.5E-10 67.7 9.0 41 216-256 160-201 (230)
94 cd07382 MPP_DR1281 Deinococcus 98.2 8.2E-05 1.8E-09 67.2 14.9 171 23-257 1-181 (255)
95 PRK09968 serine/threonine-spec 98.1 3.5E-06 7.6E-11 74.5 5.7 49 21-81 14-63 (218)
96 cd07422 MPP_ApaH Escherichia c 98.1 5E-06 1.1E-10 75.2 6.4 66 25-139 2-68 (257)
97 cd07413 MPP_PA3087 Pseudomonas 98.1 6.4E-06 1.4E-10 73.0 6.7 51 25-87 2-60 (222)
98 TIGR00668 apaH bis(5'-nucleosy 98.1 6.6E-06 1.4E-10 74.9 6.3 49 22-82 1-50 (279)
99 cd07421 MPP_Rhilphs Rhilph pho 98.0 1.6E-05 3.5E-10 72.7 8.0 52 23-86 3-60 (304)
100 KOG3662|consensus 97.9 5.1E-05 1.1E-09 72.1 9.8 94 18-141 45-147 (410)
101 smart00156 PP2Ac Protein phosp 97.8 7.9E-05 1.7E-09 68.1 7.7 73 22-139 28-100 (271)
102 cd07381 MPP_CapA CapA and rela 97.6 0.00073 1.6E-08 60.4 11.2 124 124-257 76-222 (239)
103 cd07416 MPP_PP2B PP2B, metallo 97.6 0.00022 4.8E-09 66.2 7.6 71 23-138 44-114 (305)
104 TIGR00282 metallophosphoestera 97.5 0.0038 8.2E-08 56.8 13.9 184 22-272 1-199 (266)
105 cd07415 MPP_PP2A_PP4_PP6 PP2A, 97.4 0.00039 8.5E-09 63.9 7.2 72 23-139 43-114 (285)
106 cd07420 MPP_RdgC Drosophila me 97.4 0.00057 1.2E-08 63.8 8.1 73 22-139 51-124 (321)
107 cd07414 MPP_PP1_PPKL PP1, PPKL 97.4 0.00043 9.3E-09 63.9 6.9 72 23-139 51-122 (293)
108 smart00854 PGA_cap Bacterial c 97.4 0.0022 4.8E-08 57.3 11.4 127 124-257 72-220 (239)
109 PF09587 PGA_cap: Bacterial ca 97.4 0.0015 3.2E-08 58.9 10.2 129 123-258 73-232 (250)
110 PTZ00480 serine/threonine-prot 97.4 0.00042 9E-09 64.6 6.6 72 23-139 60-131 (320)
111 PTZ00239 serine/threonine prot 97.3 0.0007 1.5E-08 62.7 7.1 72 23-139 44-115 (303)
112 cd07418 MPP_PP7 PP7, metalloph 97.2 0.00088 1.9E-08 63.6 7.2 72 23-139 67-139 (377)
113 KOG3325|consensus 97.2 0.00055 1.2E-08 55.9 4.9 81 214-298 78-160 (183)
114 cd07419 MPP_Bsu1_C Arabidopsis 97.2 0.0014 3.1E-08 61.0 7.7 72 23-139 49-128 (311)
115 PF04042 DNA_pol_E_B: DNA poly 97.1 0.00033 7.1E-09 61.2 3.1 45 24-75 1-46 (209)
116 cd07417 MPP_PP5_C PP5, C-termi 97.1 0.0016 3.5E-08 60.8 7.8 53 21-85 59-112 (316)
117 PTZ00244 serine/threonine-prot 97.1 0.0011 2.4E-08 61.2 6.1 71 24-139 54-124 (294)
118 KOG3770|consensus 96.9 0.004 8.6E-08 61.6 8.1 95 20-139 137-264 (577)
119 KOG4419|consensus 96.7 0.0096 2.1E-07 58.9 9.3 57 18-74 39-101 (602)
120 KOG3947|consensus 96.5 0.02 4.4E-07 51.6 9.5 71 18-140 58-128 (305)
121 TIGR03768 RPA4764 metallophosp 96.3 0.017 3.7E-07 56.0 8.2 110 19-139 34-171 (492)
122 PTZ00235 DNA polymerase epsilo 95.8 0.064 1.4E-06 49.1 9.1 92 17-139 23-123 (291)
123 cd07380 MPP_CWF19_N Schizosacc 95.2 0.071 1.5E-06 44.3 6.7 19 58-76 24-42 (150)
124 KOG0372|consensus 93.7 0.18 4E-06 44.8 6.1 71 24-139 45-115 (303)
125 KOG0373|consensus 93.5 0.26 5.7E-06 43.2 6.7 71 24-139 48-118 (306)
126 COG1692 Calcineurin-like phosp 91.6 9.9 0.00021 34.1 14.8 44 22-75 1-45 (266)
127 KOG0374|consensus 90.8 0.34 7.4E-06 45.5 4.6 73 23-140 60-133 (331)
128 KOG2863|consensus 90.6 1.1 2.4E-05 42.2 7.5 64 49-139 16-89 (456)
129 TIGR03768 RPA4764 metallophosp 90.0 1 2.2E-05 44.1 7.0 59 242-308 399-465 (492)
130 KOG0371|consensus 87.7 1.3 2.9E-05 39.8 5.7 89 23-157 61-151 (319)
131 PF13277 YmdB: YmdB-like prote 86.9 22 0.00049 32.0 13.0 158 45-257 11-179 (253)
132 cd07398 MPP_YbbF-LpxH Escheric 85.3 0.67 1.5E-05 40.1 2.6 30 240-273 187-216 (217)
133 KOG3818|consensus 84.6 4.6 0.0001 39.1 7.9 90 21-140 282-371 (525)
134 KOG0375|consensus 84.4 2.1 4.6E-05 40.2 5.5 71 24-139 90-160 (517)
135 TIGR01769 GGGP geranylgeranylg 77.4 12 0.00026 32.7 7.5 57 47-139 11-67 (205)
136 PRK09968 serine/threonine-spec 73.9 2.9 6.4E-05 36.7 2.9 30 242-275 179-208 (218)
137 PF06874 FBPase_2: Firmicute f 69.9 5 0.00011 40.6 3.7 34 52-89 176-209 (640)
138 cd07424 MPP_PrpA_PrpB PrpA and 68.7 4.5 9.8E-05 35.0 2.9 29 242-274 168-196 (207)
139 KOG2476|consensus 64.4 21 0.00045 35.0 6.4 43 22-75 6-49 (528)
140 TIGR01768 GGGP-family geranylg 62.1 33 0.00071 30.4 7.0 53 50-139 17-69 (223)
141 COG1646 Predicted phosphate-bi 61.2 35 0.00075 30.4 6.8 56 49-140 30-85 (240)
142 PF09423 PhoD: PhoD-like phosp 57.2 29 0.00062 34.0 6.4 42 19-73 103-145 (453)
143 PF07451 SpoVAD: Stage V sporu 56.7 5.7 0.00012 36.8 1.3 50 26-76 36-87 (329)
144 TIGR02667 moaB_proteo molybden 54.7 65 0.0014 26.8 7.3 41 44-84 46-88 (163)
145 cd02067 B12-binding B12 bindin 54.4 57 0.0012 25.2 6.6 38 49-90 39-76 (119)
146 PF10686 DUF2493: Protein of u 52.4 32 0.0007 24.6 4.4 40 20-70 2-41 (71)
147 PRK09982 universal stress prot 50.0 45 0.00097 26.7 5.5 19 49-68 92-110 (142)
148 PRK04169 geranylgeranylglycery 48.6 71 0.0015 28.5 6.9 50 54-140 26-75 (232)
149 PF01884 PcrB: PcrB family; I 48.4 50 0.0011 29.4 5.8 52 50-139 22-73 (230)
150 COG1911 RPL30 Ribosomal protei 47.6 1E+02 0.0022 23.6 6.5 50 49-137 24-73 (100)
151 PHA03008 hypothetical protein; 46.1 20 0.00042 31.1 2.8 40 216-255 162-205 (234)
152 cd00886 MogA_MoaB MogA_MoaB fa 45.7 1.4E+02 0.0031 24.3 8.0 38 47-84 47-86 (152)
153 cd02071 MM_CoA_mut_B12_BD meth 45.6 75 0.0016 24.9 6.0 38 49-90 39-76 (122)
154 TIGR00640 acid_CoA_mut_C methy 44.0 75 0.0016 25.6 5.8 39 48-90 41-79 (132)
155 PF13727 CoA_binding_3: CoA-bi 42.5 35 0.00075 27.8 3.8 66 18-89 100-165 (175)
156 cd07423 MPP_PrpE Bacillus subt 41.1 36 0.00078 30.0 3.9 29 242-274 181-209 (234)
157 COG2248 Predicted hydrolase (m 40.7 39 0.00085 30.6 3.9 60 19-92 174-235 (304)
158 cd02812 PcrB_like PcrB_like pr 40.4 99 0.0022 27.3 6.5 54 50-139 15-68 (219)
159 TIGR03568 NeuC_NnaA UDP-N-acet 39.6 1.1E+02 0.0024 28.9 7.2 25 47-71 80-104 (365)
160 PRK15005 universal stress prot 39.0 59 0.0013 25.6 4.6 18 49-66 96-113 (144)
161 PRK11439 pphA serine/threonine 38.9 29 0.00063 30.3 2.9 29 242-274 179-207 (218)
162 TIGR01501 MthylAspMutase methy 38.8 1.4E+02 0.003 24.2 6.6 39 48-90 40-78 (134)
163 cd07391 MPP_PF1019 Pyrococcus 38.1 31 0.00067 28.8 2.9 29 216-255 107-135 (172)
164 KOG3325|consensus 37.9 77 0.0017 26.4 4.9 41 22-71 1-41 (183)
165 PF13481 AAA_25: AAA domain; P 36.5 71 0.0015 26.7 4.9 45 48-92 128-175 (193)
166 cd00408 DHDPS-like Dihydrodipi 36.5 1.9E+02 0.0041 26.0 8.0 46 46-91 17-62 (281)
167 TIGR00977 LeuA_rel 2-isopropyl 35.7 79 0.0017 31.8 5.7 62 26-89 103-164 (526)
168 COG3855 Fbp Uncharacterized pr 35.2 57 0.0012 32.1 4.3 30 56-89 186-215 (648)
169 TIGR03249 KdgD 5-dehydro-4-deo 35.0 2E+02 0.0044 26.3 8.0 46 46-91 25-70 (296)
170 PF07355 GRDB: Glycine/sarcosi 34.2 1.8E+02 0.004 27.5 7.5 49 19-77 48-96 (349)
171 TIGR03413 GSH_gloB hydroxyacyl 34.1 55 0.0012 29.2 4.0 29 63-91 120-151 (248)
172 cd03770 SR_TndX_transposase Se 32.7 1.9E+02 0.0042 23.1 6.7 21 48-68 56-76 (140)
173 cd07945 DRE_TIM_CMS Leptospira 32.6 1.2E+02 0.0025 27.8 5.9 67 21-89 90-157 (280)
174 PF00582 Usp: Universal stress 32.2 1E+02 0.0022 23.2 4.9 22 48-69 90-111 (140)
175 PRK03170 dihydrodipicolinate s 31.7 2.4E+02 0.0052 25.6 7.9 46 46-91 21-66 (292)
176 PRK01018 50S ribosomal protein 31.7 2.1E+02 0.0046 21.6 6.4 21 50-70 22-42 (99)
177 TIGR00674 dapA dihydrodipicoli 31.5 2.5E+02 0.0054 25.5 7.9 46 46-91 18-63 (285)
178 cd02072 Glm_B12_BD B12 binding 31.3 1.3E+02 0.0028 24.2 5.3 39 48-90 38-76 (128)
179 PF03437 BtpA: BtpA family; I 31.1 1.9E+02 0.0042 26.1 6.9 54 24-84 141-195 (254)
180 TIGR01319 glmL_fam conserved h 31.0 1.1E+02 0.0024 30.1 5.7 36 53-91 113-148 (463)
181 TIGR01917 gly_red_sel_B glycin 30.8 2.2E+02 0.0048 27.8 7.6 49 18-76 43-91 (431)
182 TIGR03884 sel_bind_Methan sele 30.6 77 0.0017 22.9 3.4 24 43-66 25-48 (74)
183 PLN02417 dihydrodipicolinate s 30.6 2.6E+02 0.0055 25.4 7.8 45 46-90 21-65 (280)
184 PRK13600 putative ribosomal pr 30.5 2.3E+02 0.0049 21.0 6.1 23 49-71 18-40 (84)
185 TIGR01918 various_sel_PB selen 30.3 2.3E+02 0.005 27.7 7.5 50 17-76 42-91 (431)
186 cd00951 KDGDH 5-dehydro-4-deox 30.1 2.8E+02 0.0061 25.2 8.1 45 47-91 21-65 (289)
187 PF00072 Response_reg: Respons 29.8 2.2E+02 0.0048 20.7 6.5 25 49-73 32-56 (112)
188 cd00950 DHDPS Dihydrodipicolin 29.8 2.5E+02 0.0054 25.3 7.7 46 46-91 20-65 (284)
189 PRK10116 universal stress prot 29.6 1.3E+02 0.0029 23.5 5.2 18 49-66 91-108 (142)
190 cd07389 MPP_PhoD Bacillus subt 29.2 1.5E+02 0.0032 25.6 5.9 19 124-142 88-106 (228)
191 TIGR00683 nanA N-acetylneurami 29.2 2.9E+02 0.0062 25.3 7.9 46 46-91 20-66 (290)
192 PF02350 Epimerase_2: UDP-N-ac 28.7 1.3E+02 0.0029 28.3 5.7 35 47-88 54-88 (346)
193 PF03465 eRF1_3: eRF1 domain 3 28.5 40 0.00087 26.3 1.9 27 49-75 26-52 (113)
194 TIGR03190 benz_CoA_bzdN benzoy 28.4 1.8E+02 0.0039 27.8 6.6 55 46-135 299-353 (377)
195 PF07555 NAGidase: beta-N-acet 27.9 1.9E+02 0.0041 26.9 6.5 49 42-92 51-101 (306)
196 PRK11475 DNA-binding transcrip 27.7 1.7E+02 0.0038 25.2 5.9 32 49-82 26-57 (207)
197 PRK00976 hypothetical protein; 27.7 1.4E+02 0.003 28.1 5.5 17 123-139 102-119 (326)
198 cd03786 GT1_UDP-GlcNAc_2-Epime 27.6 2.2E+02 0.0049 26.1 7.1 26 46-71 74-99 (363)
199 PRK10799 metal-binding protein 27.3 86 0.0019 28.0 4.0 21 52-73 178-198 (247)
200 PRK02228 V-type ATP synthase s 27.2 2.4E+02 0.0052 21.4 5.9 53 22-74 1-58 (100)
201 PRK02261 methylaspartate mutas 26.9 2.9E+02 0.0063 22.2 6.7 39 48-90 42-80 (137)
202 cd00952 CHBPH_aldolase Trans-o 26.8 3.1E+02 0.0066 25.4 7.7 46 46-91 28-73 (309)
203 PRK04147 N-acetylneuraminate l 26.8 3.1E+02 0.0066 25.0 7.7 46 46-91 23-69 (293)
204 PRK03620 5-dehydro-4-deoxygluc 26.5 3.5E+02 0.0075 24.9 8.0 45 46-90 27-71 (303)
205 TIGR02313 HpaI-NOT-DapA 2,4-di 25.7 3.6E+02 0.0078 24.6 8.0 45 46-90 20-64 (294)
206 PF14639 YqgF: Holliday-juncti 25.5 1.5E+02 0.0032 24.4 4.8 39 49-91 52-90 (150)
207 PRK10241 hydroxyacylglutathion 25.4 90 0.0019 27.9 3.8 28 64-91 122-152 (251)
208 PRK14039 ADP-dependent glucoki 25.0 2.1E+02 0.0046 28.2 6.4 61 20-91 179-246 (453)
209 COG3207 DIT1 Pyoverdine/dityro 24.9 79 0.0017 28.8 3.2 56 19-74 103-162 (330)
210 KOG0377|consensus 24.5 55 0.0012 32.0 2.2 43 64-139 196-238 (631)
211 PF00701 DHDPS: Dihydrodipicol 24.4 2.6E+02 0.0057 25.3 6.8 46 46-91 21-66 (289)
212 KOG2756|consensus 24.3 1.3E+02 0.0029 27.6 4.5 60 10-70 179-252 (349)
213 PLN02219 probable galactinol-- 24.0 61 0.0013 33.9 2.6 15 125-139 502-518 (775)
214 COG1358 RPL8A Ribosomal protei 23.9 3.1E+02 0.0067 21.6 6.1 22 49-70 32-53 (116)
215 TIGR02260 benz_CoA_red_B benzo 23.3 2.7E+02 0.0058 27.1 6.8 27 48-74 338-364 (413)
216 TIGR03395 sphingomy sphingomye 23.0 2.1E+02 0.0044 26.2 5.7 64 24-89 134-203 (283)
217 PF07318 DUF1464: Protein of u 22.5 3.1E+02 0.0067 26.0 6.8 49 17-66 4-53 (343)
218 TIGR00486 YbgI_SA1388 dinuclea 22.4 1.6E+02 0.0034 26.4 4.7 21 52-73 180-200 (249)
219 COG0329 DapA Dihydrodipicolina 22.2 4.4E+02 0.0096 24.2 7.8 48 45-92 23-70 (299)
220 KOG0093|consensus 21.7 1.8E+02 0.004 24.3 4.5 72 17-91 17-122 (193)
221 PLN02355 probable galactinol-- 21.7 66 0.0014 33.6 2.4 15 125-139 510-526 (758)
222 TIGR00236 wecB UDP-N-acetylglu 21.6 3.3E+02 0.0071 25.3 7.0 26 46-71 72-97 (365)
223 TIGR00259 thylakoid_BtpA membr 21.6 3.6E+02 0.0077 24.5 6.8 46 23-74 139-185 (257)
224 PF01248 Ribosomal_L7Ae: Ribos 21.5 2.9E+02 0.0062 20.2 5.4 25 49-73 20-44 (95)
225 cd04120 Rab12 Rab12 subfamily. 21.5 93 0.002 26.8 3.0 30 58-89 70-99 (202)
226 PF05902 4_1_CTD: 4.1 protein 21.3 1.3E+02 0.0028 23.7 3.4 34 21-65 70-103 (114)
227 PTZ00063 histone deacetylase; 21.1 4E+02 0.0086 26.2 7.5 49 42-90 231-287 (436)
228 TIGR03677 rpl7ae 50S ribosomal 21.1 3.4E+02 0.0073 21.3 5.9 23 50-72 32-54 (117)
229 COG2875 CobM Precorrin-4 methy 21.0 3.4E+02 0.0074 24.4 6.3 11 123-133 101-111 (254)
230 COG0381 WecB UDP-N-acetylgluco 20.9 3.5E+02 0.0076 26.1 6.9 26 46-71 78-103 (383)
231 PLN02746 hydroxymethylglutaryl 20.8 1.6E+02 0.0034 28.0 4.6 38 25-64 142-179 (347)
232 KOG1625|consensus 20.8 2.8E+02 0.006 28.1 6.3 45 24-75 343-387 (600)
233 PRK12344 putative alpha-isopro 20.8 2.5E+02 0.0055 28.2 6.3 61 26-88 107-167 (524)
234 PF12404 DUF3663: Peptidase ; 20.8 1.8E+02 0.0038 21.3 3.8 29 45-73 36-64 (77)
235 PF12683 DUF3798: Protein of u 20.7 1.2E+02 0.0026 27.7 3.5 50 8-73 50-99 (275)
236 cd02068 radical_SAM_B12_BD B12 20.5 3.6E+02 0.0078 20.8 6.1 36 50-90 28-64 (127)
237 PLN02684 Probable galactinol-- 20.4 80 0.0017 32.9 2.6 15 125-139 501-517 (750)
238 PRK10773 murF UDP-N-acetylmura 20.3 3.5E+02 0.0077 26.3 7.1 74 23-138 355-439 (453)
239 cd00954 NAL N-Acetylneuraminic 20.2 5.1E+02 0.011 23.5 7.8 45 47-91 21-66 (288)
240 PLN02982 galactinol-raffinose 20.2 84 0.0018 33.1 2.7 15 125-139 614-630 (865)
No 1
>KOG2310|consensus
Probab=100.00 E-value=3.6e-51 Score=384.35 Aligned_cols=295 Identities=54% Similarity=0.964 Sum_probs=283.9
Q ss_pred CCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCce
Q psy11941 19 RNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSV 98 (313)
Q Consensus 19 ~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~ 98 (313)
.+.||||+++|.|+|+..++..|++|.+.+|++|++.|.++++|+|++.|||||...||..++.++++.|+++|.++.-+
T Consensus 11 entirILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L~~~i~lLRryClgdkP~ 90 (646)
T KOG2310|consen 11 ENTIRILVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQENDVDMILLGGDLFHENKPSRKTLHRCLELLRRYCLGDKPV 90 (646)
T ss_pred ccceEEEEeecCccccccCCcccccchHHHHHHHHHHHHhcCCcEEEecCcccccCCccHHHHHHHHHHHHHHccCCCce
Confidence 77999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccCcccccccC---CCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEecccccCCceeeecEEE
Q psy11941 99 FIDVISDPKLVMCND---HVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLII 175 (313)
Q Consensus 99 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 175 (313)
++|++||.+-.|.+. .|||.||++..++|||.|-||||.+.+.+.++++++|...|++++||++..++.+.+.|+++
T Consensus 91 ~le~lSD~s~~f~~~~f~~VNY~DpNlNIsIPVFsIHGNHDDpSG~~~lsalDIL~~~GLVNyFGk~~~id~I~vsPiLl 170 (646)
T KOG2310|consen 91 QLEILSDQSVNFGNSVFGNVNYEDPNLNISIPVFSIHGNHDDPSGDGRLSALDILSAAGLVNYFGKVSEIDKIDVSPILL 170 (646)
T ss_pred eeEEecccceeccccccceecccCCCcceeeeeEEeecCCCCCccccccchHHHHHhcchhhhhccccCcceEEEEeeee
Confidence 999999999999987 79999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCeEEEEEecCCCchHHHHHHhhhcchhccCCCC-CCCcceEEEeeccccCCCCcCccccccCCCcccEEEeCCccCc
Q psy11941 176 QKNETKVAIFGLGYVKDERLCNMIKHNKVKYMKPTD-DKDIIYILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHEHEC 254 (313)
Q Consensus 176 ~~~~~~~~i~gl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Ilv~H~~~~~~~~~~~~~~~~~~~~~d~v~~GH~H~~ 254 (313)
++|..++++||++.+.++++-.+..+.++.++.|.. ..+.+++++.|++...+++..++++.+++.++|+|+|||.|.+
T Consensus 171 qKG~tklALYGLg~irDeRL~R~Fk~~~V~f~rPe~~e~dWFNllvlHQNr~~h~~tn~lpE~flp~F~DlviWGHEHEC 250 (646)
T KOG2310|consen 171 QKGSTKLALYGLGSIRDERLYRMFKNGKVTFLRPEEYEDDWFNLLVLHQNRSKHRPTNFLPEQFLPDFLDLVIWGHEHEC 250 (646)
T ss_pred ccCceeEEEeeccccchHHHHHHHHhCceEEecCccccccceeeEEEeecccCCCCcccCcHhHhhhhhhheeecccccc
Confidence 999999999999999999999999999999999875 4678999999999988887789999999999999999999999
Q ss_pred cccCCCCCCCcccEEecCCCceeccccCccccccEEEEEEeCCceeEEEEeCCCCCCCC
Q psy11941 255 RIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPRSLETVRPFV 313 (313)
Q Consensus 255 ~~~~~~~~~~~~~i~~~GS~~~~~~~e~~~~~~g~~vv~~~~~~~~~~~i~l~~~r~~~ 313 (313)
...+..+...+++|.+|||..++|+++++..+|-+.++++.++.+..+.|||.++|||+
T Consensus 251 ~i~p~~n~~~~F~i~QPGSsVaTSL~~gEa~~Khv~lL~Ikg~~~~l~~IpL~TVRpf~ 309 (646)
T KOG2310|consen 251 KIDPQYNAIQGFYILQPGSSVATSLSPGEAKPKHVGLLRIKGRKFKLEKIPLRTVRPFV 309 (646)
T ss_pred ccCcccccccceeeecCCCccccccCcccccCceEEEEEecCCcccccccccceeccee
Confidence 99998888899999999999999999999899999999999999999999999999996
No 2
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=100.00 E-value=2.3e-50 Score=383.02 Aligned_cols=294 Identities=49% Similarity=0.880 Sum_probs=258.1
Q ss_pred CeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCcee
Q psy11941 20 NTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVF 99 (313)
Q Consensus 20 ~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 99 (313)
++|||+|+||+|+|....+..|..+.+.+|+++++.|+++++|+||++||+||...|+.+++.++++.|+++|.++.-++
T Consensus 2 ~~mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD~VLiaGDLFd~~~Ps~~~~~~~~~~lr~~~~g~~p~~ 81 (405)
T TIGR00583 2 DTIRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVDMILLGGDLFHENKPSRKSLYQVLRSLRLYCLGDKPCE 81 (405)
T ss_pred CceEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHhhccCCccc
Confidence 68999999999999877778888999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCccccccc---CCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEecccccCCceeeecEEEe
Q psy11941 100 IDVISDPKLVMCN---DHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQ 176 (313)
Q Consensus 100 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 176 (313)
+|+|+|.+..|.+ ..+||+||+++.++|||+|.||||.+.+.+..+++++|...|+++++++....+.+.+.|+.++
T Consensus 82 ~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p~~~~~~~~l~lL~~~Glvnifgk~~~~~~i~~~Pvll~ 161 (405)
T TIGR00583 82 LEFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDPSGDGLLCALDLLHATGLVNYFGKVPEIDNIIVSPILLQ 161 (405)
T ss_pred hhhccchhhhcccccccccccccccccCCCCEEEEcCCCCCccccccccHHHHHHhCCCEEEeccccccccceeeeEEEe
Confidence 9999998877754 4789999999999999999999999987655678899999999888888766777788899999
Q ss_pred eCCeEEEEEecCCCchHHHHHHhhhcchhccCCC-CCCCcceEEEeeccccCCCCcCccccccCCCcccEEEeCCccCcc
Q psy11941 177 KNETKVAIFGLGYVKDERLCNMIKHNKVKYMKPT-DDKDIIYILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHEHECR 255 (313)
Q Consensus 177 ~~~~~~~i~gl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Ilv~H~~~~~~~~~~~~~~~~~~~~~d~v~~GH~H~~~ 255 (313)
+++.++.+||+||..++++.+...+.++.+..|. ...+.++|+++|+++...+...+++..+++.++|||+|||+|.++
T Consensus 162 kg~~~valyGl~~~~d~rl~~~f~~~~v~~~~p~~~~~~~fnIlv~Hq~~~~~~~~~~ipe~llp~~fDYValGHiH~~~ 241 (405)
T TIGR00583 162 KGETKLALYGISNVRDERLVRTFKDNKVSFLRPNAGAEDWFNLLVLHQNHAAHTSTSFLPESFIPDFFDLVIWGHEHECL 241 (405)
T ss_pred cCCeeEEEecCCCCCHHHHHHHhhccchhhhccccCCCCceEEEEeCceecCCCCcccCchhhhhccCcEEEeccccccc
Confidence 9999999999999998888777666566655553 223568999999998665544677788888899999999999998
Q ss_pred ccCCCCCCCcccEEecCCCceeccccCccccccEEEEEEeCCceeEEEEeCCCCCCCC
Q psy11941 256 IKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPRSLETVRPFV 313 (313)
Q Consensus 256 ~~~~~~~~~~~~i~~~GS~~~~~~~e~~~~~~g~~vv~~~~~~~~~~~i~l~~~r~~~ 313 (313)
..+......+..++||||+.+++|++++..+|||.+++++++.++++++||+++|||+
T Consensus 242 ~~p~~~~~~~~~V~ypGS~v~tSf~e~E~~~Kgv~lVeI~~~~~~~~~IpL~~vRpf~ 299 (405)
T TIGR00583 242 PDPVYNPSDGFYVLQPGSTVATSLTPGEALPKHVFILNIKGRKFASKPIPLQTVRPFV 299 (405)
T ss_pred ccccccCCCCceEEECCCcccccccccccCCCEEEEEEEcCCeeEEEEeeCCCcccEE
Confidence 7654333356789999999999999877789999999999989999999999999985
No 3
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=100.00 E-value=1.3e-32 Score=263.13 Aligned_cols=249 Identities=16% Similarity=0.280 Sum_probs=175.5
Q ss_pred EEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeee
Q psy11941 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFID 101 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 101 (313)
|||+|+||||+|....+..+..+....++++++.+.++++|+||++||+||...++......+.+++.++.
T Consensus 1 mkilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~--------- 71 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQ--------- 71 (407)
T ss_pred CEEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCCEEEECCccccCCCCcHHHHHHHHHHHHHHH---------
Confidence 79999999999987666666667777889999999999999999999999998776555555556666543
Q ss_pred eccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEecccccCCceeeecEEEee--CC
Q psy11941 102 VISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQK--NE 179 (313)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~ 179 (313)
..++||++|+||||...... ....++...|+. +++.... .....++.+.. |.
T Consensus 72 ---------------------~~~~~v~~I~GNHD~~~~l~--~~~~~l~~~gi~-vl~~~~~--~~~~~~v~l~~~~g~ 125 (407)
T PRK10966 72 ---------------------QTGCQLVVLAGNHDSVATLN--ESRDLLAFLNTT-VIASASD--DLGHQVIILPRRDGT 125 (407)
T ss_pred ---------------------hcCCcEEEEcCCCCChhhhh--hHHHHHHHCCcE-EEecccc--cCCcceEEEecCCCC
Confidence 34689999999999977532 234666666643 5543211 11223455543 23
Q ss_pred eEEEEEecCCCchHHHHHHh------------hhc--c-hh-------ccCCCCCCCcceEEEeeccccC----------
Q psy11941 180 TKVAIFGLGYVKDERLCNMI------------KHN--K-VK-------YMKPTDDKDIIYILVLHQNRPE---------- 227 (313)
Q Consensus 180 ~~~~i~gl~~~~~~~~~~~~------------~~~--~-~~-------~~~~~~~~~~~~Ilv~H~~~~~---------- 227 (313)
..+.|+++||..+..+.... .+. . .+ .....-.++.++|+++|..+..
T Consensus 126 ~~~~i~~lPy~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~I~~aH~~v~g~~~~~sEr~~ 205 (407)
T PRK10966 126 PGAVLCAIPFLRPRDVITSQAGQSGIEKQQALQAAIADHYQQLYQLACELRDELGQPLPIIATGHLTTVGASKSDSVRDI 205 (407)
T ss_pred eeeEEEECCCCCHHHHhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEeEEEcCCcccCCeeEe
Confidence 45679999999886554321 000 0 00 0000012245799999977542
Q ss_pred -CCCcCccccccCCCcccEEEeCCccCccccCCCCCCCcccEEecCCCceeccccCccccccEEEEEEeCC-ceeEEEEe
Q psy11941 228 -RGTVKNIAEDSIPSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQ-NYKLVPRS 305 (313)
Q Consensus 228 -~~~~~~~~~~~~~~~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS~~~~~~~e~~~~~~g~~vv~~~~~-~~~~~~i~ 305 (313)
.|+...++.+.++. +|||++||+|++|.+. +..+++|+|||.+++|+|.+ ..||+++|+++.+ .+.++.+|
T Consensus 206 ~vGg~~~v~~~~f~~-~dYvALGHlH~~Q~v~-----~~~~vrYsGSpl~~sFsE~~-~~K~v~lVel~~~~~~~v~~i~ 278 (407)
T PRK10966 206 YIGTLDAFPAQAFPP-ADYIALGHIHRAQKVG-----GTEHIRYSGSPIPLSFDELG-KSKSVHLVEFDQGKLQSVTPLP 278 (407)
T ss_pred eecCCceecHHHCCc-cCeeeccccccCcCCC-----CCCcEEEcCCCCCCCccccC-CCCeEEEEEEcCCccceEEEEE
Confidence 13334455556654 7999999999999862 34579999999999999964 5799999999865 57999999
Q ss_pred CCCCCCC
Q psy11941 306 LETVRPF 312 (313)
Q Consensus 306 l~~~r~~ 312 (313)
++..||+
T Consensus 279 l~~~~~l 285 (407)
T PRK10966 279 VPVFQPM 285 (407)
T ss_pred CCCCcee
Confidence 9998886
No 4
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=99.98 E-value=3.2e-31 Score=253.69 Aligned_cols=250 Identities=30% Similarity=0.445 Sum_probs=174.8
Q ss_pred EEEEEeeccccC-cccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceee
Q psy11941 22 IRIMIASDIHLG-YLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFI 100 (313)
Q Consensus 22 mkilh~SD~Hlg-~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 100 (313)
|||||+|||||| .......|.++.+.+|.++++.|++.++|+||++||+||+..|+..++..+.+.|++++
T Consensus 1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~-------- 72 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLK-------- 72 (390)
T ss_pred CeeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCCEEEEccccccCCCCCHHHHHHHHHHHHHhc--------
Confidence 899999999999 67778889999999999999999999999999999999999999999999999999886
Q ss_pred eeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEecc-cc-cCCc-eeeecEEEee
Q psy11941 101 DVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGK-CT-NLNE-ITLNPLIIQK 177 (313)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~-~~-~~~~-~~~~~~~l~~ 177 (313)
..++|||+|+||||...+......+..+...+.....+. .. .... ....+..+..
T Consensus 73 ----------------------~~~Ipv~~I~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (390)
T COG0420 73 ----------------------DAGIPVVVIAGNHDSPSRLSEASPLLLLNNLGLHGVVGRLVHEIRPPEIVAAPWLIPG 130 (390)
T ss_pred ----------------------cCCCcEEEecCCCCchhccccccchHHHHcCCceeecccceecccccchhcceeeecc
Confidence 568999999999999997655444444555554433321 00 0000 0022344443
Q ss_pred CCeEEE-EEecCCCchHHHHHHhhhcchhccCCCCCCCcceEEEeecccc--CCCCcC---ccc--cccCCCc-ccEEEe
Q psy11941 178 NETKVA-IFGLGYVKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRP--ERGTVK---NIA--EDSIPSF-FHFILW 248 (313)
Q Consensus 178 ~~~~~~-i~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~--~~~~~~---~~~--~~~~~~~-~d~v~~ 248 (313)
...... +++..+.................+.+ . +...|++.|.... ..+... .-. ...++.+ +|||++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~Il~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YvAL 207 (390)
T COG0420 131 PDPDVVFFLGLNGLEKEQFELLLHKGLLSALDP--D-DDPSILVLHQSIDALTSGAERDLALGTVDLSLLPKGGFDYVAL 207 (390)
T ss_pred CCCcceeeeccCCchHHHHHHHHhHhHHhhcCC--c-cCceeeehhhhhcccccCCccceEEcccccccccCCCcceEEc
Confidence 233344 77777776655444331111111122 1 4599999999643 111111 111 2334444 899999
Q ss_pred CCccCccccCCCCCCCcccEEecCCCceeccccCccccccEEEEEEeCC-ceeEEEEeCCCC
Q psy11941 249 GHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQ-NYKLVPRSLETV 309 (313)
Q Consensus 249 GH~H~~~~~~~~~~~~~~~i~~~GS~~~~~~~e~~~~~~g~~vv~~~~~-~~~~~~i~l~~~ 309 (313)
||+|.++..+. ....++|||||.+.+|+|.+ ..+++.+|+++++ .+.++.++++..
T Consensus 208 GHiH~~~~~~~----~~~~i~y~GS~~~~~f~E~~-~~k~~~~v~~~~~~~~~~~~~~~~~~ 264 (390)
T COG0420 208 GHIHKRQVIPK----EDPPIVYPGSPERYSFGEEG-ERKGVVLVEFSGGKLWRFEELFVPLF 264 (390)
T ss_pred CCcccccccCC----CCCceecCCCceecchhHcC-CcccEEEEEecCCceeeecccccccc
Confidence 99999998742 22567899999999999864 7899999999987 455555555543
No 5
>PHA02546 47 endonuclease subunit; Provisional
Probab=99.98 E-value=5.8e-31 Score=247.20 Aligned_cols=227 Identities=16% Similarity=0.142 Sum_probs=157.9
Q ss_pred EEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCC-CCHHHHHHHHH-HHHHhccCCCcee
Q psy11941 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINK-PSPTTLKKCLE-TLRKYCIGDRSVF 99 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~-~~~~~~~~~~~-~l~~l~~~~~~~~ 99 (313)
|||+|+||||+|.......+.++...+|+++++.++++++|+|+++||+||... ++..+...+.+ +++++.
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~------- 73 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGITTWIQLGDTFDVRKAITQNTMNFVREKIFDLLK------- 73 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHHH-------
Confidence 899999999999876556666778889999999999999999999999999963 44444444444 344332
Q ss_pred eeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCC-c-CchHHHHhhCCCeeEecccccCCceeeecEEEee
Q psy11941 100 IDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPE-L-VAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQK 177 (313)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~-~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 177 (313)
+.++||++|+||||...... . .+...++...+++.+++.. ..+..
T Consensus 74 -----------------------~~gi~v~~I~GNHD~~~~~~~~~~~~~~ll~~~~~v~v~~~~----------~~v~i 120 (340)
T PHA02546 74 -----------------------EAGITLHVLVGNHDMYYKNTIRPNAPTELLGQYDNITVIDEP----------TTVDF 120 (340)
T ss_pred -----------------------HCCCeEEEEccCCCcccccccccCchHHHHhhCCCEEEeCCc----------eEEEE
Confidence 45789999999999864211 1 1234556655555555432 22222
Q ss_pred CCeEEEEEecCCCchHHHHHHhhhcchhccCCCCCCCcceEEEeeccccCC----CC--cCccccccCCCcccEEEeCCc
Q psy11941 178 NETKVAIFGLGYVKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPER----GT--VKNIAEDSIPSFFHFILWGHE 251 (313)
Q Consensus 178 ~~~~~~i~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~----~~--~~~~~~~~~~~~~d~v~~GH~ 251 (313)
++ +.++++||.++......... +++ +..+|+++|..+... |. ...++...+ ..+|||++||+
T Consensus 121 ~g--~~i~~lP~~~~~~~~~~~~~-----l~~----~~~~ill~H~~v~g~~~~~g~~~~~~~~~~~~-~~fdyvALGHi 188 (340)
T PHA02546 121 DG--CSIDLIPWICKENTEEILEF-----IKN----SKSEYCVGHWELNGFYFYKGMKSDHGLDPDFL-KKYKQVWSGHF 188 (340)
T ss_pred CC--EEEEECCCCCHHHHHHHHHH-----hcc----CCCcEEEEeeEEecCcccCCCccccCCChhHh-ccCCEEeeccc
Confidence 33 46788899887655443322 222 347899999754321 11 112333344 46899999999
Q ss_pred cCccccCCCCCCCcccEEecCCCceeccccCccccccEEEEEEeCCceeEEEEeCCCCCCC
Q psy11941 252 HECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPRSLETVRPF 312 (313)
Q Consensus 252 H~~~~~~~~~~~~~~~i~~~GS~~~~~~~e~~~~~~g~~vv~~~~~~~~~~~i~l~~~r~~ 312 (313)
|+++.. ..++|||||++++|+|.+ .+|||++++++.. +++|+|++. |+|
T Consensus 189 H~~~~~--------~~i~Y~GSp~~~sf~E~~-~~KG~~~vd~~~~--~~efip~~~-~~~ 237 (340)
T PHA02546 189 HTISEK--------GNVTYIGTPYTLTAGDEN-DPRGFWVFDTETH--KLEFIANPT-TWH 237 (340)
T ss_pred ccCccc--------CCEEEeCCceeeCccccC-CCCeEEEEECCCC--ceEEEeCCC-ceE
Confidence 998642 369999999999999843 5899999988865 578999875 776
No 6
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=4.5e-29 Score=225.28 Aligned_cols=219 Identities=22% Similarity=0.293 Sum_probs=142.7
Q ss_pred EEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeee
Q psy11941 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFID 101 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 101 (313)
|||+|+||||+|.......+..+...+|+++++.++++++|+|+++||+||...++..+...+.++|+++.
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~--------- 71 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQIDALLVAGDVFDTANPPAEAQELFNAFFRNLS--------- 71 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHHH---------
Confidence 89999999999998777777778888999999999999999999999999999887777777777887764
Q ss_pred eccCcccccccCCCccCCCCCCCC-CcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEecccccCCceeeecEEEee--C
Q psy11941 102 VISDPKLVMCNDHVNYMDPNLNIS-LPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQK--N 178 (313)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~-~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~--~ 178 (313)
+.. +||++|+||||....... ...++...+ +.+++..... ..++.+.. +
T Consensus 72 ---------------------~~~~i~v~~i~GNHD~~~~~~~--~~~l~~~~~-v~i~~~~~~~----~~~~~l~~~~~ 123 (253)
T TIGR00619 72 ---------------------DANPIPIVVISGNHDSAQRLSA--AKKLLIELG-VFVVGFPVGD----PQILLLKDTAN 123 (253)
T ss_pred ---------------------hcCCceEEEEccCCCChhhccc--chhHHHhCC-eEEEEecccC----ceEEEeccCCC
Confidence 334 899999999999875332 223444443 4455443221 11234432 1
Q ss_pred CeEEEEEecCCCchHHHHHH-------------hhh---cchhccCCCCCCCcceEEEeeccccCC-----------CCc
Q psy11941 179 ETKVAIFGLGYVKDERLCNM-------------IKH---NKVKYMKPTDDKDIIYILVLHQNRPER-----------GTV 231 (313)
Q Consensus 179 ~~~~~i~gl~~~~~~~~~~~-------------~~~---~~~~~~~~~~~~~~~~Ilv~H~~~~~~-----------~~~ 231 (313)
+..+.+...++......... ..+ ..++.+.....++.++|+++|..+... |+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il~~H~~v~g~~~~~se~~~~~g~~ 203 (253)
T TIGR00619 124 GELLIVGLPLLPREALLTRAGLDGFGLELLLLHLDVKLRQALEGLIRRLDPDLPKILLAHLFTAGATKSATERRIYIGFT 203 (253)
T ss_pred CceEEEEeccCCHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcceeccCCCcCceEEeeECCc
Confidence 22233333333222111100 000 001111111123458999999987421 222
Q ss_pred CccccccCCCcccEEEeCCccCccccCCCCCCCcccEEecCCCceeccccCc
Q psy11941 232 KNIAEDSIPSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGE 283 (313)
Q Consensus 232 ~~~~~~~~~~~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS~~~~~~~e~~ 283 (313)
..++...++. +|||++||+|++|... +...++|+|||.+++|+|.+
T Consensus 204 ~~v~~~~~~~-~dYvALGHiH~~q~~~-----~~~~i~YsGSp~~~sf~E~~ 249 (253)
T TIGR00619 204 YAVPLINFPE-ADYVALGHHHIHKISK-----GRERVRYSGSPFPLSFDEAG 249 (253)
T ss_pred cccCHHHCCc-cchhhccccccccccC-----CCCCEEECCCCccCCcCccc
Confidence 2333444444 7999999999988652 45689999999999999854
No 7
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.96 E-value=1.2e-27 Score=210.94 Aligned_cols=215 Identities=34% Similarity=0.559 Sum_probs=147.7
Q ss_pred EEEEeeccccCcccCCcC---ccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCcee
Q psy11941 23 RIMIASDIHLGYLETDRE---RGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVF 99 (313)
Q Consensus 23 kilh~SD~Hlg~~~~~~~---~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 99 (313)
||+|+||+|+|....... +..+...+|+++++.+++.++|+||++||+|+...++...+..+.+.|+++.
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~------- 73 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVDFVLIAGDLFDSNNPSPEALELLIEALRRLK------- 73 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHH-------
Confidence 799999999998654333 4678889999999999999999999999999998777777888888888653
Q ss_pred eeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEecccccCCceeeecEEEeeCC
Q psy11941 100 IDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNE 179 (313)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 179 (313)
..++|+++++||||.+....... ..... ..+....... ....+..+..+.
T Consensus 74 -----------------------~~~~~v~~~~GNHD~~~~~~~~~--~~~~~-~~~~~~~~~~----~~~~~~~~~~~~ 123 (223)
T cd00840 74 -----------------------EAGIPVFIIAGNHDSPSRLGALS--PLLAL-SGLHLVGVEE----DVLTPLLLPKGG 123 (223)
T ss_pred -----------------------HCCCCEEEecCCCCCcccccccc--chHhh-CcEEEEcccC----cceeEEEeccCC
Confidence 24689999999999988543221 11111 1121211000 011123344456
Q ss_pred eEEEEEecCCCchHHHHHHhhhcchhccCCCCCCCcceEEEeeccccCCCCcC-----ccccccCCCcccEEEeCCccCc
Q psy11941 180 TKVAIFGLGYVKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTVK-----NIAEDSIPSFFHFILWGHEHEC 254 (313)
Q Consensus 180 ~~~~i~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~~~-----~~~~~~~~~~~d~v~~GH~H~~ 254 (313)
.++.|+|+||................ .. ....+.++|+++|+++....... .....+...++||+++||+|.+
T Consensus 124 ~~v~i~g~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~Il~~H~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~GH~H~~ 201 (223)
T cd00840 124 TGVAIYGLPYLRRSRLRDLLADAELR-PR-PLDPDDFNILLLHGGVAGAGPSDSERAPFVPEALLPAGFDYVALGHIHRP 201 (223)
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHH-hh-ccCCCCcEEEEEeeeeecCCCCcccccccCcHhhcCcCCCEEECCCcccC
Confidence 78999999998876544332110000 01 11234589999999976543221 2233455678999999999999
Q ss_pred cccCCCCCCCcccEEecCCCceeccc
Q psy11941 255 RIKPEYNTKQRFHVCQPGSPVATSLC 280 (313)
Q Consensus 255 ~~~~~~~~~~~~~i~~~GS~~~~~~~ 280 (313)
+... ..+..++|||||.+++|+
T Consensus 202 ~~~~----~~~~~~~ypGS~~~~~f~ 223 (223)
T cd00840 202 QIIL----GGGPPIVYPGSPEGLSFS 223 (223)
T ss_pred eeec----CCCceEEeCCCccccCCC
Confidence 9752 357899999999999984
No 8
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.85 E-value=2e-20 Score=171.02 Aligned_cols=227 Identities=18% Similarity=0.243 Sum_probs=135.6
Q ss_pred CCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhc--CCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCC
Q psy11941 19 RNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQ--EVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDR 96 (313)
Q Consensus 19 ~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~--~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~ 96 (313)
.++|||+|+||+|+.........+.+....|+++++.++++ ++|+||++||+++.+. .+.++.+.+.|++
T Consensus 12 ~~~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~--~~~~~~~~~~l~~------ 83 (275)
T PRK11148 12 EARVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHS--SEAYQHFAEGIAP------ 83 (275)
T ss_pred CCCEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCC--HHHHHHHHHHHhh------
Confidence 36799999999999654333333456778899999998765 6999999999999764 3678888888774
Q ss_pred ceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCe---eEecccccCCceeeecE
Q psy11941 97 SVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLV---NYFGKCTNLNEITLNPL 173 (313)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~ 173 (313)
.+.|+++|+||||.... ..+.+...+.. .++ ....+.+ +
T Consensus 84 ---------------------------l~~Pv~~v~GNHD~~~~-----~~~~~~~~~~~~~~~~~----~~~~~~~--i 125 (275)
T PRK11148 84 ---------------------------LRKPCVWLPGNHDFQPA-----MYSALQDAGISPAKHVL----IGEHWQI--L 125 (275)
T ss_pred ---------------------------cCCcEEEeCCCCCChHH-----HHHHHhhcCCCccceEE----ecCCEEE--E
Confidence 35799999999998542 11223221110 000 0001111 2
Q ss_pred EEeeCCeEEEEEe--cCCCchHHHHHHhhhcchhccCCCCCCCcceEEEeeccccCCCCc--C--ccc-----cccC-C-
Q psy11941 174 IIQKNETKVAIFG--LGYVKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTV--K--NIA-----EDSI-P- 240 (313)
Q Consensus 174 ~l~~~~~~~~i~g--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~~--~--~~~-----~~~~-~- 240 (313)
.+.. .+.| -+++.++++.|+.+.+.. .+++..++++||++...+.. + .+. .+++ +
T Consensus 126 ~Lds-----~~~g~~~G~l~~~ql~wL~~~L~~-------~~~~~~vv~~hH~P~~~~~~~~d~~~l~n~~~l~~ll~~~ 193 (275)
T PRK11148 126 LLDS-----QVFGVPHGELSEYQLEWLERKLAD-------APERHTLVLLHHHPLPAGCAWLDQHSLRNAHELAEVLAKF 193 (275)
T ss_pred EecC-----CCCCCcCCEeCHHHHHHHHHHHhh-------CCCCCeEEEEcCCCCCCCcchhhccCCCCHHHHHHHHhcC
Confidence 2211 1122 345678899988765421 12346677788765433210 0 000 1222 3
Q ss_pred CcccEEEeCCccCccccCCCCCCCcccEEecCCCc-ee-----ccccCccccccEEEEEEeC-CceeEEEEeCCC
Q psy11941 241 SFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPV-AT-----SLCAGEAVQKKCGILMCNK-QNYKLVPRSLET 308 (313)
Q Consensus 241 ~~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS~~-~~-----~~~e~~~~~~g~~vv~~~~-~~~~~~~i~l~~ 308 (313)
.+++++++||+|...... .++..++.++|+. +. .|.. ...+.||.++++.+ +.+..+.+.++.
T Consensus 194 ~~v~~vl~GH~H~~~~~~----~~gi~~~~~ps~~~q~~~~~~~~~~-~~~~~g~~~~~l~~~g~~~~~~~~~~~ 263 (275)
T PRK11148 194 PNVKAILCGHIHQELDLD----WNGRRLLATPSTCVQFKPHCTNFTL-DTVAPGWRELELHADGSLETEVHRLAD 263 (275)
T ss_pred CCceEEEecccChHHhce----ECCEEEEEcCCCcCCcCCCCCcccc-ccCCCcEEEEEEcCCCcEEEEEEEcCC
Confidence 368999999999976532 1333444444433 11 1111 12457999999974 568888877765
No 9
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.81 E-value=4.3e-18 Score=154.38 Aligned_cols=236 Identities=11% Similarity=0.079 Sum_probs=135.5
Q ss_pred CeEEEEEeeccccCcccCC----cCccchhHHHHHHHHHHHHhc--CCCEEEEcCCcCCCCCCCH---HHHHHHHHHHHH
Q psy11941 20 NTIRIMIASDIHLGYLETD----RERGNDSFVSFEEILEQALDQ--EVDMVLLGGDLFHINKPSP---TTLKKCLETLRK 90 (313)
Q Consensus 20 ~~mkilh~SD~Hlg~~~~~----~~~~~~~~~~l~~ii~~~~~~--~~d~vv~~GDlf~~~~~~~---~~~~~~~~~l~~ 90 (313)
+.++|+++||+|+|..... ..+..+....++.+++.+.+. ++|+|+++||+++...... +..+.+.+.+++
T Consensus 3 ~~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~~ 82 (262)
T cd07395 3 GPFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDVLSL 82 (262)
T ss_pred CCEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHHHHHhh
Confidence 5789999999999974332 122344455788999999887 9999999999999875421 223444455543
Q ss_pred hccCCCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHH-hhCCCeeEecccccCCcee
Q psy11941 91 YCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIV-SNSGLVNYFGKCTNLNEIT 169 (313)
Q Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~ 169 (313)
+ ..++|+++++||||....... ..+..+ ...+.-.+... ...+.
T Consensus 83 ~-------------------------------~~~vp~~~i~GNHD~~~~~~~-~~~~~f~~~~g~~~y~~~---~~~~~ 127 (262)
T cd07395 83 L-------------------------------DPDIPLVCVCGNHDVGNTPTE-ESIKDYRDVFGDDYFSFW---VGGVF 127 (262)
T ss_pred c-------------------------------cCCCcEEEeCCCCCCCCCCCh-hHHHHHHHHhCCcceEEE---ECCEE
Confidence 2 246899999999998542211 112222 12221100000 01111
Q ss_pred eecEEEeeCCeEEEEEecCCCchHHHHHHhhhcchhccCCCCCCCcceEEEeeccccCCCCc---Cc--c--------cc
Q psy11941 170 LNPLIIQKNETKVAIFGLGYVKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTV---KN--I--------AE 236 (313)
Q Consensus 170 ~~~~~l~~~~~~~~i~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~~---~~--~--------~~ 236 (313)
+ +.+.... ...-.+.++...+++.|+.+.++.. . ..+++..|+++|+|+...+.. .+ + ..
T Consensus 128 ~--i~lds~~-~~~~~~~~~~~~~ql~WL~~~L~~~--~--~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~~~l~~ 200 (262)
T cd07395 128 F--IVLNSQL-FFDPSEVPELAQAQDVWLEEQLEIA--K--ESDCKHVIVFQHIPWFLEDPDEEDSYFNIPKSVRKPLLD 200 (262)
T ss_pred E--EEecccc-ccCccccccchHHHHHHHHHHHHHH--H--hccCCcEEEEECcCCccCCCCCCcccCCcCHHHHHHHHH
Confidence 1 2221100 0000122356678888887664321 0 123458899999997532211 11 1 01
Q ss_pred ccCCCcccEEEeCCccCccccCCCCCCCcccEEecCCCceeccccCccccccEEEEEEeCCceeEEEEe
Q psy11941 237 DSIPSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPRS 305 (313)
Q Consensus 237 ~~~~~~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS~~~~~~~e~~~~~~g~~vv~~~~~~~~~~~i~ 305 (313)
.+.+.+++++++||+|...... ..+...+.++++. ..++ ..+.||.++++++++++.++..
T Consensus 201 ll~~~~V~~v~~GH~H~~~~~~----~~g~~~~~~~~~~-~~~~---~~~~g~~~~~v~~~~~~~~~~~ 261 (262)
T cd07395 201 KFKKAGVKAVFSGHYHRNAGGR----YGGLEMVVTSAIG-AQLG---NDKSGLRIVKVTEDKIVHEYYS 261 (262)
T ss_pred HHHhcCceEEEECccccCCceE----ECCEEEEEcCcee-cccC---CCCCCcEEEEECCCceeeeeee
Confidence 1223689999999999877642 2334444455543 2333 2579999999998888777654
No 10
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.80 E-value=1e-18 Score=154.30 Aligned_cols=170 Identities=27% Similarity=0.337 Sum_probs=110.9
Q ss_pred eEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceee
Q psy11941 21 TIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFI 100 (313)
Q Consensus 21 ~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 100 (313)
.|||+|+||+|++.... ...++++++.++++++|+|+++||+++...... ..+.+.++++
T Consensus 1 ~~~i~~~sDlH~~~~~~--------~~~~~~~~~~~~~~~~d~vl~~GD~~~~~~~~~---~~~~~~l~~l--------- 60 (223)
T cd07385 1 GLRIAHLSDLHLGPFVS--------RERLERLVEKINALKPDLVVLTGDLVDGSVDVL---ELLLELLKKL--------- 60 (223)
T ss_pred CCEEEEEeecCCCccCC--------HHHHHHHHHHHhccCCCEEEEcCcccCCcchhh---HHHHHHHhcc---------
Confidence 48999999999987532 135788999999999999999999999875532 4455566543
Q ss_pred eeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEecccccCCceeeecEEEeeCCe
Q psy11941 101 DVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNET 180 (313)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (313)
....|+++++||||....... ...+.+...++. ++.. +...+..++.
T Consensus 61 ----------------------~~~~~v~~v~GNHD~~~~~~~-~~~~~l~~~~v~-~L~~---------~~~~~~~~~~ 107 (223)
T cd07385 61 ----------------------KAPLGVYAVLGNHDYYSGDEE-NWIEALESAGIT-VLRN---------ESVEISVGGA 107 (223)
T ss_pred ----------------------CCCCCEEEECCCcccccCchH-HHHHHHHHcCCE-Eeec---------CcEEeccCCe
Confidence 245799999999999774322 113555555543 2211 1244555667
Q ss_pred EEEEEecCCCchHHHHHHhhhcchhccCCCCCCCcceEEEeeccccCCCCcCccccccCCCcccEEEeCCccCccccC
Q psy11941 181 KVAIFGLGYVKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHEHECRIKP 258 (313)
Q Consensus 181 ~~~i~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~~~~~~~~~~~~~~d~v~~GH~H~~~~~~ 258 (313)
.+.++|+.+.... ...+... +. ...++.++|+++|.|.. . ......++||+++||+|.+|...
T Consensus 108 ~i~i~G~~~~~~~-~~~~~~~-----~~-~~~~~~~~I~l~H~P~~-------~-~~~~~~~~dl~l~GHtHggqi~~ 170 (223)
T cd07385 108 TIGIAGVDDGLGR-RPDLEKA-----LK-GLDEDDPNILLAHQPDT-------A-EEAAAWGVDLQLSGHTHGGQIRL 170 (223)
T ss_pred EEEEEeccCcccc-CCCHHHH-----Hh-CCCCCCCEEEEecCCCh-------h-HHhcccCccEEEeccCCCCEEec
Confidence 8888886543221 0111111 11 11234599999999632 1 11234679999999999999754
No 11
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.80 E-value=2.3e-18 Score=153.76 Aligned_cols=190 Identities=20% Similarity=0.175 Sum_probs=118.2
Q ss_pred EEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhc--CCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceee
Q psy11941 23 RIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQ--EVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFI 100 (313)
Q Consensus 23 kilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~--~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 100 (313)
||+|+||+|++.......+..+....|+++++.+++. ++|+||++||+++.+.+ ..++.+.+.|++
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~--~~~~~~~~~l~~---------- 68 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGSP--ESYERLRELLAA---------- 68 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCCH--HHHHHHHHHHhh----------
Confidence 6999999999975432334456677899999999987 99999999999998654 567777777764
Q ss_pred eeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEecccccCCceeeecEEEeeCCe
Q psy11941 101 DVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNET 180 (313)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (313)
.++|+++|+||||.... ....+...... ... ....+..+
T Consensus 69 -----------------------~~~p~~~v~GNHD~~~~-----~~~~~~~~~~~-----~~~------~~~~~~~~-- 107 (240)
T cd07402 69 -----------------------LPIPVYLLPGNHDDRAA-----MRAVFPELPPA-----PGF------VQYVVDLG-- 107 (240)
T ss_pred -----------------------cCCCEEEeCCCCCCHHH-----HHHhhcccccc-----ccc------cceeEecC--
Confidence 35799999999998542 11122111000 000 00122222
Q ss_pred EEEEEecC---------CCchHHHHHHhhhcchhccCCCCCCCcceEEEeeccccCCCC---cC-------ccccccCCC
Q psy11941 181 KVAIFGLG---------YVKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGT---VK-------NIAEDSIPS 241 (313)
Q Consensus 181 ~~~i~gl~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~---~~-------~~~~~~~~~ 241 (313)
++.++++. +..+.++.|+.+.+.. ..++..|+++|+++...+. .. .+...+...
T Consensus 108 ~~~~i~lds~~~~~~~~~~~~~ql~wL~~~L~~-------~~~~~~il~~H~pp~~~~~~~~~~~~~~~~~~~~~~l~~~ 180 (240)
T cd07402 108 GWRLILLDSSVPGQHGGELCAAQLDWLEAALAE-------APDKPTLVFLHHPPFPVGIAWMDAIGLRNAEALAAVLARH 180 (240)
T ss_pred CEEEEEEeCCCCCCcCCEECHHHHHHHHHHHHh-------CCCCCEEEEECCCCccCCchhhhhhhCCCHHHHHHHHhcC
Confidence 23344432 3456777777655321 1245899999998754321 00 011112233
Q ss_pred -cccEEEeCCccCccccCCCCCCCcccEEecCCCce
Q psy11941 242 -FFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVA 276 (313)
Q Consensus 242 -~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS~~~ 276 (313)
+++++++||+|...... .++..++++||...
T Consensus 181 ~~v~~v~~GH~H~~~~~~----~~g~~~~~~gs~~~ 212 (240)
T cd07402 181 PNVRAILCGHVHRPIDGS----WGGIPLLTAPSTCH 212 (240)
T ss_pred CCeeEEEECCcCchHHeE----ECCEEEEEcCccee
Confidence 78999999999977653 25566667777433
No 12
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.79 E-value=3.5e-18 Score=155.89 Aligned_cols=171 Identities=18% Similarity=0.342 Sum_probs=109.1
Q ss_pred CCCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCc
Q psy11941 18 DRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRS 97 (313)
Q Consensus 18 ~~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~ 97 (313)
...+|||+|+||+|++.... ...++++++.+++.++|+|+++||+++.... .....+.+.|+++.
T Consensus 46 ~~~~~rI~~lSDlH~~~~~~--------~~~l~~~v~~i~~~~pDlVli~GD~~d~~~~--~~~~~~~~~L~~L~----- 110 (271)
T PRK11340 46 NAAPFKILFLADLHYSRFVP--------LSLISDAIALGIEQKPDLILLGGDYVLFDMP--LNFSAFSDVLSPLA----- 110 (271)
T ss_pred CCCCcEEEEEcccCCCCcCC--------HHHHHHHHHHHHhcCCCEEEEccCcCCCCcc--ccHHHHHHHHHHHh-----
Confidence 44579999999999875321 2357889999999999999999999984322 23345556666553
Q ss_pred eeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcC-chHHHHhhCCCeeEecccccCCceeeecEEEe
Q psy11941 98 VFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELV-AALDIVSNSGLVNYFGKCTNLNEITLNPLIIQ 176 (313)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 176 (313)
...|+|+++||||+..+.... ...+.++..|+. ++.. +...+.
T Consensus 111 --------------------------~~~pv~~V~GNHD~~~~~~~~~~~~~~l~~~gi~-lL~n---------~~~~i~ 154 (271)
T PRK11340 111 --------------------------ECAPTFACFGNHDRPVGTEKNHLIGETLKSAGIT-VLFN---------QATVIA 154 (271)
T ss_pred --------------------------hcCCEEEecCCCCcccCccchHHHHHHHHhcCcE-EeeC---------CeEEEe
Confidence 236999999999986532211 133456655543 3321 114444
Q ss_pred eCCeEEEEEecCCCchHHHHHHhhhcchhccCCCCCCCcceEEEeeccccCCCCcCccccccCCCcccEEEeCCccCccc
Q psy11941 177 KNETKVAIFGLGYVKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHEHECRI 256 (313)
Q Consensus 177 ~~~~~~~i~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~~~~~~~~~~~~~~d~v~~GH~H~~~~ 256 (313)
.++..+.++|++....... ... +.+ .++.++|+++|.|.. .. .....++|++++||+|.+|.
T Consensus 155 ~~~~~i~i~G~~d~~~~~~-~~~-----~~~----~~~~~~IlL~H~P~~-------~~-~~~~~~~dL~lsGHTHGGQi 216 (271)
T PRK11340 155 TPNRQFELVGTGDLWAGQC-KPP-----PAS----EANLPRLVLAHNPDS-------KE-VMRDEPWDLMLCGHTHGGQL 216 (271)
T ss_pred eCCcEEEEEEecchhccCC-Chh-----Hhc----CCCCCeEEEEcCCCh-------hH-hhccCCCCEEEeccccCCeE
Confidence 5566788999864211100 000 001 124599999999732 21 22335789999999999997
Q ss_pred c
Q psy11941 257 K 257 (313)
Q Consensus 257 ~ 257 (313)
.
T Consensus 217 ~ 217 (271)
T PRK11340 217 R 217 (271)
T ss_pred E
Confidence 4
No 13
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.75 E-value=3e-17 Score=145.01 Aligned_cols=201 Identities=16% Similarity=0.180 Sum_probs=117.3
Q ss_pred CCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCce
Q psy11941 19 RNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSV 98 (313)
Q Consensus 19 ~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~ 98 (313)
...+||+.+||+|- ...+++++++.++++++|+||++||+.+.+. ..+.+..+++.|.+
T Consensus 2 ~~~~kIl~iSDiHg------------n~~~le~l~~~~~~~~~D~vv~~GDl~~~g~-~~~~~~~~l~~l~~-------- 60 (224)
T cd07388 2 RTVRYVLATSNPKG------------DLEALEKLVGLAPETGADAIVLIGNLLPKAA-KSEDYAAFFRILGE-------- 60 (224)
T ss_pred CceeEEEEEEecCC------------CHHHHHHHHHHHhhcCCCEEEECCCCCCCCC-CHHHHHHHHHHHHh--------
Confidence 35799999999992 3456889999998899999999999999863 23556666666653
Q ss_pred eeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhh----CCCeeEecccccCCceeeecEE
Q psy11941 99 FIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSN----SGLVNYFGKCTNLNEITLNPLI 174 (313)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~ 174 (313)
.+.|+++++||||... ... ..+.+.. ++.+++.+++ ..
T Consensus 61 -------------------------l~~pv~~V~GNhD~~v-~~~--l~~~~~~~~~~p~~~~lh~~~----------~~ 102 (224)
T cd07388 61 -------------------------AHLPTFYVPGPQDAPL-WEY--LREAYNAELVHPEIRNVHETF----------AF 102 (224)
T ss_pred -------------------------cCCceEEEcCCCChHH-HHH--HHHHhcccccCccceecCCCe----------EE
Confidence 3579999999999752 100 0011110 1112222211 11
Q ss_pred EeeCCeEEEEEecCCCch-------HHH----HHHhhhcchhccCCCCCCCcceEEEeeccccCCCC----cCccccccC
Q psy11941 175 IQKNETKVAIFGLGYVKD-------ERL----CNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGT----VKNIAEDSI 239 (313)
Q Consensus 175 l~~~~~~~~i~gl~~~~~-------~~~----~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~----~~~~~~~~~ 239 (313)
+ ...+.|+|++.... ++. .|+.... .+.+.. ......|+++|+|+...+. ...+..-+-
T Consensus 103 ~---~g~~~~~GlGGs~~~~~e~sE~e~~~~~~~~~~~~-l~~~~~--~~~~~~VLv~H~PP~g~g~~h~GS~alr~~I~ 176 (224)
T cd07388 103 W---RGPYLVAGVGGEIADEGEPEEHEALRYPAWVAEYR-LKALWE--LKDYRKVFLFHTPPYHKGLNEQGSHEVAHLIK 176 (224)
T ss_pred e---cCCeEEEEecCCcCCCCCcCHHHHhhhhhhHHHHH-HHHHHh--CCCCCeEEEECCCCCCCCCCccCHHHHHHHHH
Confidence 1 11345666543322 111 2211110 111111 1234899999999865421 111111122
Q ss_pred CCcccEEEeCCccCccccCCCCCCCcccEEecCCCceeccccCccccccEEEEEEeCCce
Q psy11941 240 PSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNY 299 (313)
Q Consensus 240 ~~~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS~~~~~~~e~~~~~~g~~vv~~~~~~~ 299 (313)
...+.+++|||+|.... ..+.+.++|||+ +. ...|.++++++..+
T Consensus 177 ~~~P~l~i~GHih~~~~-----~~g~t~vvNpg~-----~~-----~g~~a~i~~~~~~v 221 (224)
T cd07388 177 THNPLVVLVGGKGQKHE-----LLGASWVVVPGD-----LS-----EGRYALLDLRARKL 221 (224)
T ss_pred HhCCCEEEEcCCceeEE-----EeCCEEEECCCc-----cc-----CCcEEEEEecCcce
Confidence 34568999999993332 358889999998 22 23578999986543
No 14
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.75 E-value=9.3e-18 Score=138.39 Aligned_cols=80 Identities=25% Similarity=0.356 Sum_probs=60.7
Q ss_pred EEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeeeec
Q psy11941 24 IMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDVI 103 (313)
Q Consensus 24 ilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 103 (313)
|+|+||+|++........ .....|.++++.+.+.++|+|+++||+++.+.+ +.+..+.++++++.
T Consensus 1 il~isD~Hl~~~~~~~~~--~~~~~l~~~~~~~~~~~~d~vi~~GDl~~~~~~--~~~~~~~~~~~~l~----------- 65 (144)
T cd07400 1 ILHLSDLHFGPERKPELL--ALLSLLDRLLAEIKALDPDLVVITGDLTQRGLP--EEFEEAREFLDALP----------- 65 (144)
T ss_pred CeEeCccCCCCCcchhHH--HHHHHHHHHHHHHhccCCCEEEECCCCCCCCCH--HHHHHHHHHHHHcc-----------
Confidence 689999999986443221 111227778888989999999999999998654 66778888888653
Q ss_pred cCcccccccCCCccCCCCCCCCCcEEEEcCCCCC
Q psy11941 104 SDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDD 137 (313)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~ 137 (313)
....|+++++||||.
T Consensus 66 -------------------~~~~~~~~v~GNHD~ 80 (144)
T cd07400 66 -------------------APLEPVLVVPGNHDV 80 (144)
T ss_pred -------------------ccCCcEEEeCCCCeE
Confidence 112599999999997
No 15
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.74 E-value=4.8e-17 Score=148.10 Aligned_cols=223 Identities=17% Similarity=0.212 Sum_probs=129.4
Q ss_pred EEEEEeeccccCcccCC-cCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCC-CHHHHHHHHHHHHHhccCCCcee
Q psy11941 22 IRIMIASDIHLGYLETD-RERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKP-SPTTLKKCLETLRKYCIGDRSVF 99 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~-~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~-~~~~~~~~~~~l~~l~~~~~~~~ 99 (313)
+||+++||+|++..... .....+....++++++.+++.++|+||++||+++.+.+ +.+.+..+.+.+.+
T Consensus 1 ~r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d~vv~~GDlv~~~~~~~~~~~~~~~~~l~~--------- 71 (267)
T cd07396 1 FRFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLDFVVQLGDIIDGDNARAEEALDAVLAILDR--------- 71 (267)
T ss_pred CeEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCCEEEECCCeecCCCchHHHHHHHHHHHHHh---------
Confidence 48999999998875432 22234566789999999999999999999999987754 22456666666663
Q ss_pred eeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCe-eEecccccCCceeeecEEEeeC
Q psy11941 100 IDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLV-NYFGKCTNLNEITLNPLIIQKN 178 (313)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~ 178 (313)
.++|+++++||||.................+.. ..+. ...+.+ +.+.
T Consensus 72 ------------------------l~~p~~~v~GNHD~~~~~~~~~~~~~~~~~~~~yysf~----~~~~~~--i~ld-- 119 (267)
T cd07396 72 ------------------------LKGPVHHVLGNHDLYNPSREYLLLYTLLGLGAPYYSFS----PGGIRF--IVLD-- 119 (267)
T ss_pred ------------------------cCCCEEEecCccccccccHhhhhcccccCCCCceEEEe----cCCcEE--EEEe--
Confidence 458999999999997642211000000011110 0110 011111 2222
Q ss_pred CeEEEEE-----------------------------ecCCCchHHHHHHhhhcchhccCCCCCCCcceEEEeeccccCCC
Q psy11941 179 ETKVAIF-----------------------------GLGYVKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERG 229 (313)
Q Consensus 179 ~~~~~i~-----------------------------gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~ 229 (313)
+...... ..+.+.++++.|+.++++.. . ..+...|+++|+++...+
T Consensus 120 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~Ql~WL~~~L~~~--~---~~~~~viV~~Hhp~~~~~ 194 (267)
T cd07396 120 GYDISALGRPEDTPKAENADDNSNLGLYLSEPRFVDWNGGIGEEQLQWLRNELQEA--D---ANGEKVIIFSHFPLHPES 194 (267)
T ss_pred CCccccccCCCCChhhhhHHHhchhhhhccCccceeccCcCCHHHHHHHHHHHHHH--H---hcCCeEEEEEeccCCCCC
Confidence 1111111 13456778888887654321 1 123467999999875432
Q ss_pred CcCc--c-c----cccC-C-CcccEEEeCCccCccccCCCCCCCcccEEecCCCceeccccCccccccEEEEEEeCCce
Q psy11941 230 TVKN--I-A----EDSI-P-SFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNY 299 (313)
Q Consensus 230 ~~~~--~-~----~~~~-~-~~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS~~~~~~~e~~~~~~g~~vv~~~~~~~ 299 (313)
.... . . ..++ + .+++++++||+|...... .++.....+||+... . ...+.|.+|.+-++..
T Consensus 195 ~~~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~~~~----~~gi~~~~~~a~~~~--~---~~~~~~~~~~~~~~~~ 264 (267)
T cd07396 195 TSPHGLLWNHEEVLSILRAYGCVKACISGHDHEGGYAQ----RHGIHFLTLEGMVET--P---PESNAFGVVIVYEDRL 264 (267)
T ss_pred CCccccccCHHHHHHHHHhCCCEEEEEcCCcCCCCccc----cCCeeEEEechhhcC--C---CCCCceEEEEEeCCce
Confidence 1000 0 0 1222 2 468999999999998643 244455556664443 2 2457788888876543
No 16
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.71 E-value=2e-16 Score=137.83 Aligned_cols=86 Identities=21% Similarity=0.262 Sum_probs=59.0
Q ss_pred eEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceee
Q psy11941 21 TIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFI 100 (313)
Q Consensus 21 ~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 100 (313)
.+||+|+||+|++..............+++.+.+.+++.++|+||++||+++...+.......+.++++.+.
T Consensus 2 ~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~-------- 73 (199)
T cd07383 2 KFKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENTNDNSTSALDKAVSPMI-------- 73 (199)
T ss_pred ceEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCCchHHHHHHHHHHHHHH--------
Confidence 589999999999986533211122233455555556678999999999999987664324455555554432
Q ss_pred eeccCcccccccCCCccCCCCCCCCCcEEEEcCCCC
Q psy11941 101 DVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHD 136 (313)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD 136 (313)
..++|+++++||||
T Consensus 74 ----------------------~~~~p~~~~~GNHD 87 (199)
T cd07383 74 ----------------------DRKIPWAATFGNHD 87 (199)
T ss_pred ----------------------HcCCCEEEECccCC
Confidence 34689999999999
No 17
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.71 E-value=1.1e-17 Score=139.07 Aligned_cols=155 Identities=26% Similarity=0.373 Sum_probs=96.6
Q ss_pred EEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeee
Q psy11941 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFID 101 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 101 (313)
|||+++||+|++.. .++++++.+ .++|.|+++||+++. +.+.+.+++
T Consensus 1 Mki~~~sD~H~~~~------------~~~~~~~~~--~~~d~vi~~GDi~~~--------~~~~~~~~~----------- 47 (156)
T PF12850_consen 1 MKIAVISDLHGNLD------------ALEAVLEYI--NEPDFVIILGDIFDP--------EEVLELLRD----------- 47 (156)
T ss_dssp EEEEEEE--TTTHH------------HHHHHHHHH--TTESEEEEES-SCSH--------HHHHHHHHH-----------
T ss_pred CEEEEEeCCCCChh------------HHHHHHHHh--cCCCEEEECCCchhH--------HHHHHHHhc-----------
Confidence 89999999998653 367888888 469999999999982 444555552
Q ss_pred eccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEecccccCCceeeecEEEeeCCeE
Q psy11941 102 VISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETK 181 (313)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (313)
.|+++|+||||... +.. .... . .
T Consensus 48 ------------------------~~~~~v~GNHD~~~----------~~~-----~~~~--~--------~-------- 70 (156)
T PF12850_consen 48 ------------------------IPVYVVRGNHDNWA----------FPN-----ENDE--E--------Y-------- 70 (156)
T ss_dssp ------------------------HEEEEE--CCHSTH----------HHS-----EECT--C--------S--------
T ss_pred ------------------------CCEEEEeCCccccc----------chh-----hhhc--c--------c--------
Confidence 39999999999533 100 0000 0 0
Q ss_pred EEEEecCCCchHHHHHHhhhcchhccCCCCCCCcceEEEeeccccCCCC-cCccccccCCCcccEEEeCCccCccccCCC
Q psy11941 182 VAIFGLGYVKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGT-VKNIAEDSIPSFFHFILWGHEHECRIKPEY 260 (313)
Q Consensus 182 ~~i~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~-~~~~~~~~~~~~~d~v~~GH~H~~~~~~~~ 260 (313)
+...... ..+..+++++|+....... ...+...+....++++++||+|.++...
T Consensus 71 ----------------~~~~~~~-------~~~~~~i~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~-- 125 (156)
T PF12850_consen 71 ----------------LLDALRL-------TIDGFKILLSHGHPYDVQWDPAELREILSRENVDLVLHGHTHRPQVFK-- 125 (156)
T ss_dssp ----------------SHSEEEE-------EETTEEEEEESSTSSSSTTTHHHHHHHHHHTTSSEEEESSSSSEEEEE--
T ss_pred ----------------cccceee-------eecCCeEEEECCCCcccccChhhhhhhhcccCCCEEEcCCcccceEEE--
Confidence 0000000 0124789999997654321 1122222335678999999999999863
Q ss_pred CCCCcccEEecCCCceeccccCccccccEEEEEEeCC
Q psy11941 261 NTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQ 297 (313)
Q Consensus 261 ~~~~~~~i~~~GS~~~~~~~e~~~~~~g~~vv~~~~~ 297 (313)
.++..++||||....... .+++|++++++++
T Consensus 126 --~~~~~~~~~Gs~~~~~~~----~~~~~~i~~~~~~ 156 (156)
T PF12850_consen 126 --IGGIHVINPGSIGGPRHG----DQSGYAILDIEDK 156 (156)
T ss_dssp --ETTEEEEEE-GSSS-SSS----SSEEEEEEEETTT
T ss_pred --ECCEEEEECCcCCCCCCC----CCCEEEEEEEecC
Confidence 256889999997777654 2789999999864
No 18
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.67 E-value=3.9e-15 Score=131.28 Aligned_cols=192 Identities=17% Similarity=0.076 Sum_probs=117.2
Q ss_pred EEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeee
Q psy11941 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFID 101 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 101 (313)
++|+++||+|.+.... .......++++++.+.+.++|+|+++||+++.+.. ...+..+.+.++++.
T Consensus 1 f~~~~~~D~q~~~~~~----~~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~-~~~~~~~~~~~~~l~--------- 66 (214)
T cd07399 1 FTLAVLPDTQYYTESY----PEVFDAQTDWIVDNAEALNIAFVLHLGDIVDDGDN-DAEWEAADKAFARLD--------- 66 (214)
T ss_pred CEEEEecCCCcCCcCC----HHHHHHHHHHHHHHHHHcCCCEEEECCCccCCCCC-HHHHHHHHHHHHHHH---------
Confidence 4899999999876522 22344567889999989999999999999998752 256777777777653
Q ss_pred eccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEecccccCCceeeecEEEeeCCeE
Q psy11941 102 VISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETK 181 (313)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (313)
+.++|+++++||||... .++ +
T Consensus 67 ---------------------~~~~p~~~~~GNHD~~~------------------~ld-~------------------- 87 (214)
T cd07399 67 ---------------------KAGIPYSVLAGNHDLVL------------------ALE-F------------------- 87 (214)
T ss_pred ---------------------HcCCcEEEECCCCcchh------------------hCC-C-------------------
Confidence 24689999999999211 000 0
Q ss_pred EEEEecCCCchHHHHHHhhhcchhccCCCCCCCcceEEEeeccccCCCC-cCc------------cccccCC--CcccEE
Q psy11941 182 VAIFGLGYVKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGT-VKN------------IAEDSIP--SFFHFI 246 (313)
Q Consensus 182 ~~i~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~-~~~------------~~~~~~~--~~~d~v 246 (313)
....+++.|+.+.++. .+++..|+++|+++...+. .+. ...+++. .+++.|
T Consensus 88 -------~~~~~ql~WL~~~L~~-------~~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~V~~v 153 (214)
T cd07399 88 -------GPRDEVLQWANEVLKK-------HPDRPAILTTHAYLNCDDSRPDSIDYDSDVNDGQQIWDKLVKKNDNVFMV 153 (214)
T ss_pred -------CCCHHHHHHHHHHHHH-------CCCCCEEEEecccccCCCCcCcccccccccccHHHHHHHHHhCCCCEEEE
Confidence 0236778887665431 1245789999998753321 010 0112332 368999
Q ss_pred EeCCccCccccCC--CCCCCcccEEecCCCceeccccCccccccEEEEEEeCCceeEEEE
Q psy11941 247 LWGHEHECRIKPE--YNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPR 304 (313)
Q Consensus 247 ~~GH~H~~~~~~~--~~~~~~~~i~~~GS~~~~~~~e~~~~~~g~~vv~~~~~~~~~~~i 304 (313)
++||+|....... .+..++. +.+.=+ ...+.. ..+...+.+++++.++-++...
T Consensus 154 ~~GH~H~~~~~~~~~~~~~g~~-v~~~~~--~~q~~~-~~g~~~~r~~~f~~~~~~i~~~ 209 (214)
T cd07399 154 LSGHVHGAGRTTLVSVGDAGRT-VHQMLA--DYQGEP-NGGNGFLRLLEFDPDNNKIDVR 209 (214)
T ss_pred EccccCCCceEEEcccCCCCCE-eeEEee--cccCCC-CCCcceEEEEEEecCCCEEEEE
Confidence 9999998765422 1111111 111101 111221 1245668899998764444433
No 19
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=99.66 E-value=3.2e-15 Score=129.36 Aligned_cols=198 Identities=23% Similarity=0.384 Sum_probs=119.8
Q ss_pred CeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcC--CCCCCCHHHHHHH--HHHHHHhccCC
Q psy11941 20 NTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLF--HINKPSPTTLKKC--LETLRKYCIGD 95 (313)
Q Consensus 20 ~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf--~~~~~~~~~~~~~--~~~l~~l~~~~ 95 (313)
++||++.+||+|.+. ..|.++++.+.+.++|+++++||+. +.+.+ ...... .+.++
T Consensus 2 ~~mkil~vtDlHg~~------------~~~~k~~~~~~~~~~D~lviaGDlt~~~~~~~--~~~~~~~~~e~l~------ 61 (226)
T COG2129 2 KKMKILAVTDLHGSE------------DSLKKLLNAAADIRADLLVIAGDLTYFHFGPK--EVAEELNKLEALK------ 61 (226)
T ss_pred CcceEEEEeccccch------------HHHHHHHHHHhhccCCEEEEecceehhhcCch--HHHHhhhHHHHHH------
Confidence 589999999999555 3578899999999999999999999 77654 333332 34444
Q ss_pred CceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEecccccCCceeeecEEE
Q psy11941 96 RSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLII 175 (313)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 175 (313)
+.++||+++|||+|.+.. .+.++..+. ++.++ ..
T Consensus 62 ---------------------------~~~~~v~avpGNcD~~~v------~~~l~~~~~-~v~~~------------v~ 95 (226)
T COG2129 62 ---------------------------ELGIPVLAVPGNCDPPEV------IDVLKNAGV-NVHGR------------VV 95 (226)
T ss_pred ---------------------------hcCCeEEEEcCCCChHHH------HHHHHhccc-ccccc------------eE
Confidence 457899999999999873 244444432 23332 12
Q ss_pred eeCCeEEEEEec------CCCch-----HHHHHHhhhcchhccCCCCCCCcceEEEeeccccCCCCc-----Cccc----
Q psy11941 176 QKNETKVAIFGL------GYVKD-----ERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTV-----KNIA---- 235 (313)
Q Consensus 176 ~~~~~~~~i~gl------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~~-----~~~~---- 235 (313)
+.++ +.+.|+ ||... ..+....+. +-. ......+|+++|.|+...... ...-
T Consensus 96 ~i~~--~~~~G~Ggsn~tp~nt~~e~~E~~I~s~l~~-----~v~-~~~~~~~Il~~HaPP~gt~~d~~~g~~hvGS~~v 167 (226)
T COG2129 96 EIGG--YGFVGFGGSNPTPFNTPREFSEDEIYSKLKS-----LVK-KADNPVNILLTHAPPYGTLLDTPSGYVHVGSKAV 167 (226)
T ss_pred EecC--cEEEEecccCCCCCCCccccCHHHHHHHHHH-----HHh-cccCcceEEEecCCCCCccccCCCCccccchHHH
Confidence 2222 223333 33222 222221111 111 111213499999997532110 0000
Q ss_pred cccC-CCcccEEEeCCccCccccCCCCCCCcccEEecCCCceeccccCccccccEEEEEEeCCceeEEEE
Q psy11941 236 EDSI-PSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPR 304 (313)
Q Consensus 236 ~~~~-~~~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS~~~~~~~e~~~~~~g~~vv~~~~~~~~~~~i 304 (313)
.+++ +-..-+.++||+|..+-+ ...|.+.++|||+ + +...|+++++++..++.+..
T Consensus 168 r~~ieefqP~l~i~GHIHEs~G~---d~iG~TivVNPG~-----~-----~~g~yA~i~l~~~~Vk~~~~ 224 (226)
T COG2129 168 RKLIEEFQPLLGLHGHIHESRGI---DKIGNTIVVNPGP-----L-----GEGRYALIELEKEVVKLEQF 224 (226)
T ss_pred HHHHHHhCCceEEEeeecccccc---cccCCeEEECCCC-----c-----cCceEEEEEecCcEEEEEEe
Confidence 0111 122349999999976654 2468899999998 2 34679999999886666653
No 20
>PRK09453 phosphodiesterase; Provisional
Probab=99.65 E-value=1.3e-15 Score=130.82 Aligned_cols=168 Identities=21% Similarity=0.212 Sum_probs=103.9
Q ss_pred EEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCC----HHHHHHHHHHHHHhccCCCc
Q psy11941 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPS----PTTLKKCLETLRKYCIGDRS 97 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~----~~~~~~~~~~l~~l~~~~~~ 97 (313)
|||+++||+|... .+++++++.+++.++|.|+++||+++.+... ......+.+.|++
T Consensus 1 mri~viSD~Hg~~------------~~~~~~l~~~~~~~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~------- 61 (182)
T PRK09453 1 MKLMFASDTHGSL------------PATEKALELFAQSGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNA------- 61 (182)
T ss_pred CeEEEEEeccCCH------------HHHHHHHHHHHhcCCCEEEEcccccccCcCCCCccccCHHHHHHHHHh-------
Confidence 7999999999432 2578888888889999999999999864311 1113445556653
Q ss_pred eeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEecccccCCceeeecEEEee
Q psy11941 98 VFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQK 177 (313)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 177 (313)
.+.++++|+||||.... ..+. + ... ..
T Consensus 62 --------------------------~~~~v~~V~GNhD~~~~-------~~~~--~-------~~~---------~~-- 88 (182)
T PRK09453 62 --------------------------YADKIIAVRGNCDSEVD-------QMLL--H-------FPI---------MA-- 88 (182)
T ss_pred --------------------------cCCceEEEccCCcchhh-------hhcc--C-------Ccc---------cC--
Confidence 34689999999997431 0000 0 000 00
Q ss_pred CCeEEEEEecCCCchHHHHHHhhhcchhccCCCCCCCcceEEEeeccccCCCCcCccccccCCCcccEEEeCCccCcccc
Q psy11941 178 NETKVAIFGLGYVKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHEHECRIK 257 (313)
Q Consensus 178 ~~~~~~i~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~~~~~~~~~~~~~~d~v~~GH~H~~~~~ 257 (313)
++. . + ...+ .+|+++|+..... ... ......|++++||+|.+...
T Consensus 89 ----------~~~----------~--~------~l~g-~~i~l~HG~~~~~---~~~---~~~~~~d~vi~GHtH~p~~~ 133 (182)
T PRK09453 89 ----------PYQ----------Q--V------LLEG-KRLFLTHGHLYGP---ENL---PALHDGDVLVYGHTHIPVAE 133 (182)
T ss_pred ----------ceE----------E--E------EECC-eEEEEECCCCCCh---hhc---ccccCCCEEEECCCCCCcce
Confidence 000 0 0 0113 6789999854321 111 11245799999999998764
Q ss_pred CCCCCCCcccEEecCCCceeccccCccccccEEEEEEeCCceeEEEEeCCC
Q psy11941 258 PEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPRSLET 308 (313)
Q Consensus 258 ~~~~~~~~~~i~~~GS~~~~~~~e~~~~~~g~~vv~~~~~~~~~~~i~l~~ 308 (313)
. .++..++||||..... + ..+..|.+++++ .++.+++..
T Consensus 134 ~----~~~~~~iNpGs~~~p~-~---~~~~s~~il~~~----~~~~~~~~~ 172 (182)
T PRK09453 134 K----QGGIILFNPGSVSLPK-G---GYPASYGILDDN----VLSVIDLEG 172 (182)
T ss_pred E----ECCEEEEECCCccccC-C---CCCCeEEEEECC----cEEEEECCC
Confidence 3 2567899999976554 2 245678888874 334445443
No 21
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.64 E-value=7.9e-16 Score=131.82 Aligned_cols=166 Identities=25% Similarity=0.311 Sum_probs=94.2
Q ss_pred EEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeeeec
Q psy11941 24 IMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDVI 103 (313)
Q Consensus 24 ilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 103 (313)
|+++||+|.+.. .++. ..+++.++|+||++||+++.+.. +.+..+ +.|+
T Consensus 1 i~~~sD~H~~~~------------~~~~--~~~~~~~~D~vv~~GDl~~~~~~--~~~~~~-~~l~-------------- 49 (188)
T cd07392 1 ILAISDIHGDVE------------KLEA--IILKAEEADAVIVAGDITNFGGK--EAAVEI-NLLL-------------- 49 (188)
T ss_pred CEEEEecCCCHH------------HHHH--HHhhccCCCEEEECCCccCcCCH--HHHHHH-HHHH--------------
Confidence 689999997652 2333 45567899999999999998754 334443 5555
Q ss_pred cCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEecccccCCceeeecEEEeeCCeEEE
Q psy11941 104 SDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVA 183 (313)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (313)
..++|+++|+||||..... ..+. .+.....+. .+.+ ++ +.
T Consensus 50 -------------------~~~~p~~~v~GNHD~~~~~------~~~~-~~~~~~~~~----------~~~~--~~--~~ 89 (188)
T cd07392 50 -------------------AIGVPVLAVPGNCDTPEIL------GLLT-SAGLNLHGK----------VVEV--GG--YT 89 (188)
T ss_pred -------------------hcCCCEEEEcCCCCCHHHH------Hhhh-cCcEecCCC----------EEEE--CC--EE
Confidence 3467999999999975421 1111 111111110 0111 22 44
Q ss_pred EEecCC-----------CchHHHHHHhhhcchhccCCCCCCCcceEEEeeccccCC--CC--------cCccccccC-CC
Q psy11941 184 IFGLGY-----------VKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPER--GT--------VKNIAEDSI-PS 241 (313)
Q Consensus 184 i~gl~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~--~~--------~~~~~~~~~-~~ 241 (313)
++|++. ..+.++.++ .. +. ...++..|+++|+++... .. ...+ ..++ ..
T Consensus 90 ~~g~~~~~~~~~~~~~~~~~~~l~~~-~~-----l~--~~~~~~~ilv~H~pp~~~~~d~~~~~~~~g~~~l-~~li~~~ 160 (188)
T cd07392 90 FVGIGGSNPTPFNTPIELSEEEIVSD-GR-----LN--NLLAKNLILVTHAPPYGTAVDRVSGGFHVGSKAI-RKFIEER 160 (188)
T ss_pred EEEeCCCCCCCCCCccccCHHHHHHh-hh-----hh--ccCCCCeEEEECCCCcCCcccccCCCCccCCHHH-HHHHHHh
Confidence 555431 122333332 00 11 122458999999997541 10 0011 1122 34
Q ss_pred cccEEEeCCccCccccCCCCCCCcccEEecC
Q psy11941 242 FFHFILWGHEHECRIKPEYNTKQRFHVCQPG 272 (313)
Q Consensus 242 ~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~G 272 (313)
.++++++||+|...... ..+.++++|||
T Consensus 161 ~~~~~l~GH~H~~~~~~---~~~~~~~~n~G 188 (188)
T cd07392 161 QPLLCICGHIHESRGVD---KIGNTLVVNPG 188 (188)
T ss_pred CCcEEEEecccccccee---eeCCeEEecCC
Confidence 57999999999986432 23667888887
No 22
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.63 E-value=9.3e-15 Score=130.41 Aligned_cols=81 Identities=26% Similarity=0.185 Sum_probs=51.4
Q ss_pred EEEeeccccCcccC--CcCccchhHHHHHHHHHHHHhc--CCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCcee
Q psy11941 24 IMIASDIHLGYLET--DRERGNDSFVSFEEILEQALDQ--EVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVF 99 (313)
Q Consensus 24 ilh~SD~Hlg~~~~--~~~~~~~~~~~l~~ii~~~~~~--~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 99 (313)
|.++||+|++.... ....++...+.++++.+.+... ++|+||++||+++.... +.....+++|++
T Consensus 1 ~~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~~~~--~~~~~~l~~l~~--------- 69 (232)
T cd07393 1 IFAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVAPEDIVLIPGDISWAMKL--EEAKLDLAWIDA--------- 69 (232)
T ss_pred CeEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCCCCCEEEEcCCCccCCCh--HHHHHHHHHHHh---------
Confidence 46899999996421 1222333333344444444444 89999999999965533 344455556653
Q ss_pred eeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCC
Q psy11941 100 IDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~ 139 (313)
...|+++|+||||.+.
T Consensus 70 ------------------------l~~~v~~V~GNHD~~~ 85 (232)
T cd07393 70 ------------------------LPGTKVLLKGNHDYWW 85 (232)
T ss_pred ------------------------CCCCeEEEeCCccccC
Confidence 2348999999999853
No 23
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.63 E-value=1.9e-14 Score=130.35 Aligned_cols=184 Identities=16% Similarity=0.066 Sum_probs=98.2
Q ss_pred EEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCC-------HHHHHHHHHHHHHhccCCC
Q psy11941 24 IMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPS-------PTTLKKCLETLRKYCIGDR 96 (313)
Q Consensus 24 ilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~-------~~~~~~~~~~l~~l~~~~~ 96 (313)
|+|+||+|+|....... ....+.+++.+++.++|+||++||+++..... ......+.+.+.....
T Consensus 2 ~~~iSDlH~g~~~~~~~-----~~~~~~~~~~i~~~~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 73 (256)
T cd07401 2 FVHISDIHVSSFHPPNR-----AQDETFCSNFIDVIKPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILKESSV--- 73 (256)
T ss_pred EEEecccccCCcCchhh-----hhHHHHHHHHHHhhCCCEEEEccccccccccCCCcccccHHHHHHHHHHHHHhCC---
Confidence 79999999997543211 11135677888889999999999999875421 1112233343332110
Q ss_pred ceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEecccccCCceeeecEEEe
Q psy11941 97 SVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQ 176 (313)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 176 (313)
....|++.++||||.............+... . +.+..... +....
T Consensus 74 --------------------------~~~~p~~~v~GNHD~~~~~~~~~~~~~~~~y--~---~~~~~~~~----~~~~~ 118 (256)
T cd07401 74 --------------------------INKEKWFDIRGNHDLFNIPSLDSENNYYRKY--S---ATGRDGSF----SFSHT 118 (256)
T ss_pred --------------------------CCcceEEEeCCCCCcCCCCCccchhhHHHHh--h---eecCCCcc----ceEEE
Confidence 1147999999999997532211112222110 0 00000000 00000
Q ss_pred eCCeEEEEEe---------------cCCCchHHHHHHhhhcchhccCCCCCCCcceEEEeeccccCCCCcC-----cccc
Q psy11941 177 KNETKVAIFG---------------LGYVKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTVK-----NIAE 236 (313)
Q Consensus 177 ~~~~~~~i~g---------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~~~-----~~~~ 236 (313)
....++.+++ .+...++++.|+.+.+.. . ...+..|+++|+|+....... .+..
T Consensus 119 ~~~~~~~~I~Ldt~~~~~~~~~~~~~g~l~~~ql~wL~~~L~~----~--~~~~~~IV~~HhP~~~~~~~~~~~~~~~~~ 192 (256)
T cd07401 119 TRFGNYSFIGVDPTLFPGPKRPFNFFGSLDKKLLDRLEKELEK----S--TNSNYTIWFGHYPTSTIISPSAKSSSKFKD 192 (256)
T ss_pred ecCCCEEEEEEcCccCCCCCCCCceeccCCHHHHHHHHHHHHh----c--ccCCeEEEEEcccchhccCCCcchhHHHHH
Confidence 0001122222 245667788887554321 1 123479999999974321100 0112
Q ss_pred ccCCCcccEEEeCCccCccc
Q psy11941 237 DSIPSFFHFILWGHEHECRI 256 (313)
Q Consensus 237 ~~~~~~~d~v~~GH~H~~~~ 256 (313)
.+...+++++++||+|..+.
T Consensus 193 ll~~~~v~~vl~GH~H~~~~ 212 (256)
T cd07401 193 LLKKYNVTAYLCGHLHPLGG 212 (256)
T ss_pred HHHhcCCcEEEeCCccCCCc
Confidence 23346799999999999887
No 24
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=99.63 E-value=3e-15 Score=124.93 Aligned_cols=79 Identities=15% Similarity=0.032 Sum_probs=52.4
Q ss_pred ceEEEeeccccCCCCcCccccccCCCcccEEEeCCccCccccCCCCCCCcccEEecCCCceeccccCccccccEEEEEEe
Q psy11941 216 IYILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCN 295 (313)
Q Consensus 216 ~~Ilv~H~~~~~~~~~~~~~~~~~~~~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS~~~~~~~e~~~~~~g~~vv~~~ 295 (313)
.+|+++|++.............+...++|++++||+|.+.... .++..++||||+..... .++++|.+++++
T Consensus 76 ~~i~v~Hg~~~~~~~~~~~~~~~~~~~~d~vi~GHtH~~~~~~----~~~~~~inpGs~~~~~~----~~~~~~~i~~~~ 147 (155)
T cd00841 76 KRIFLTHGHLYGVKNGLDRLYLAKEGGADVVLYGHTHIPVIEK----IGGVLLLNPGSLSLPRG----GGPPTYAILEID 147 (155)
T ss_pred EEEEEECCcccccccchhhhhhhhhcCCCEEEECcccCCccEE----ECCEEEEeCCCccCcCC----CCCCeEEEEEec
Confidence 6788888865322110000111223568999999999998652 35678999999776544 257899999999
Q ss_pred CCceeEEE
Q psy11941 296 KQNYKLVP 303 (313)
Q Consensus 296 ~~~~~~~~ 303 (313)
+ ..++++
T Consensus 148 ~-~~~~~~ 154 (155)
T cd00841 148 D-KGEVEI 154 (155)
T ss_pred C-CCcEEE
Confidence 7 566554
No 25
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=99.63 E-value=3.5e-15 Score=125.23 Aligned_cols=77 Identities=17% Similarity=0.164 Sum_probs=49.7
Q ss_pred ceEEEeecccc-CCCCcCccccccCCCcccEEEeCCccCccccCCCCCCCcccEEecCCCceeccccCccccccEEEEEE
Q psy11941 216 IYILVLHQNRP-ERGTVKNIAEDSIPSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMC 294 (313)
Q Consensus 216 ~~Ilv~H~~~~-~~~~~~~~~~~~~~~~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS~~~~~~~e~~~~~~g~~vv~~ 294 (313)
.+|+++|+... .......+.........|++++||+|.+.... .++..++||||+.....+ .+++|.++++
T Consensus 79 ~~i~l~Hg~~~~~~~~~~~l~~~~~~~~~d~vi~GHtH~~~~~~----~~~~~~iNpGs~~~~~~~----~~~~~~il~~ 150 (158)
T TIGR00040 79 IDFGLVHGDLVYPRGDLLVLEYLAKELGVDVLIFGHTHIPVAEE----LRGILLINPGSLTGPRNG----NTPSYAILDV 150 (158)
T ss_pred EEEEEEeCcccccCCCHHHHHHHHhccCCCEEEECCCCCCccEE----ECCEEEEECCccccccCC----CCCeEEEEEe
Confidence 67888888631 11110111111113467999999999987642 256788999998765432 2578999999
Q ss_pred eCCcee
Q psy11941 295 NKQNYK 300 (313)
Q Consensus 295 ~~~~~~ 300 (313)
+++.++
T Consensus 151 ~~~~~~ 156 (158)
T TIGR00040 151 DKDKVT 156 (158)
T ss_pred cCCeEE
Confidence 887654
No 26
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=99.62 E-value=1.7e-14 Score=123.65 Aligned_cols=89 Identities=12% Similarity=0.039 Sum_probs=56.1
Q ss_pred ceEEEeeccccCCC-CcCccccccCCCcccEEEeCCccCccccCCCCCCCcccEEecCCCceeccccCccccccEEEEEE
Q psy11941 216 IYILVLHQNRPERG-TVKNIAEDSIPSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMC 294 (313)
Q Consensus 216 ~~Ilv~H~~~~~~~-~~~~~~~~~~~~~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS~~~~~~~e~~~~~~g~~vv~~ 294 (313)
.+|+++|+...... ....+........+|++++||+|.+.... .++..++||||+....-........+|+++++
T Consensus 79 ~~i~l~HG~~~~~~~~~~~~~~~~~~~~~dvii~GHTH~p~~~~----~~g~~viNPGSv~~~~~~~~~~~~~syail~~ 154 (178)
T cd07394 79 FKIGLIHGHQVVPWGDPDSLAALQRQLDVDILISGHTHKFEAFE----HEGKFFINPGSATGAFSPLDPNVIPSFVLMDI 154 (178)
T ss_pred EEEEEEECCcCCCCCCHHHHHHHHHhcCCCEEEECCCCcceEEE----ECCEEEEECCCCCCCCCCCCCCCCCeEEEEEe
Confidence 77888887532111 11111111123567999999999987643 25689999999753321111123468999999
Q ss_pred eCCceeEEEEeCCC
Q psy11941 295 NKQNYKLVPRSLET 308 (313)
Q Consensus 295 ~~~~~~~~~i~l~~ 308 (313)
+++.+.++.+.|.-
T Consensus 155 ~~~~~~~~~~~l~~ 168 (178)
T cd07394 155 QGSKVVTYVYQLID 168 (178)
T ss_pred cCCeEEEEEEEEEC
Confidence 98888888887643
No 27
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.58 E-value=6e-14 Score=128.24 Aligned_cols=80 Identities=31% Similarity=0.477 Sum_probs=65.9
Q ss_pred EEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeee
Q psy11941 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFID 101 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 101 (313)
|||+|+||+|++. ........+..+++.++..++|+||++|||.+.+.+ ..++.+.++|++.
T Consensus 1 ~~i~~isD~H~~~------~~~~~~~~~~~~~~~i~~~~~D~~v~tGDl~~~~~~--~~~~~~~~~l~~~---------- 62 (301)
T COG1409 1 MRIAHISDLHLGA------LGVDSEELLEALLAAIEQLKPDLLVVTGDLTNDGEP--EEYRRLKELLARL---------- 62 (301)
T ss_pred CeEEEEecCcccc------cccchHHHHHHHHHHHhcCCCCEEEEccCcCCCCCH--HHHHHHHHHHhhc----------
Confidence 6899999999996 123455678888999989999999999999999644 7888888888732
Q ss_pred eccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCC
Q psy11941 102 VISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSG 140 (313)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~ 140 (313)
....|++++|||||....
T Consensus 63 ---------------------~~~~~~~~vpGNHD~~~~ 80 (301)
T COG1409 63 ---------------------ELPAPVIVVPGNHDARVV 80 (301)
T ss_pred ---------------------cCCCceEeeCCCCcCCch
Confidence 345799999999999884
No 28
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.56 E-value=1.3e-15 Score=125.79 Aligned_cols=80 Identities=34% Similarity=0.495 Sum_probs=56.9
Q ss_pred EEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeee
Q psy11941 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFID 101 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 101 (313)
|||+++||+|++..... . .+..+.+.+.+.++|+||++||+++....+..............
T Consensus 1 ~ri~~isD~H~~~~~~~-------~-~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~---------- 62 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDS-------D-AFRKLDEIAAENKPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLL---------- 62 (200)
T ss_dssp EEEEEEEBBTTTHHHHC-------H-HHHHHHHHHHHTTTSEEEEESTSSSSSSHHHHHHHHHHHHHHHH----------
T ss_pred CeEEEEcCCCCCCcchh-------H-HHHHHHHHhccCCCCEEEeeccccccccccccchhhhccchhhh----------
Confidence 89999999999885432 2 45677788889999999999999999875433333221011111
Q ss_pred eccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCC
Q psy11941 102 VISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSG 140 (313)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~ 140 (313)
....|+++++||||....
T Consensus 63 ---------------------~~~~~~~~~~GNHD~~~~ 80 (200)
T PF00149_consen 63 ---------------------NPKIPVYFILGNHDYYSG 80 (200)
T ss_dssp ---------------------HTTTTEEEEE-TTSSHHH
T ss_pred ---------------------hcccccccccccccccee
Confidence 356899999999999863
No 29
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=99.56 E-value=9e-14 Score=124.75 Aligned_cols=81 Identities=20% Similarity=0.307 Sum_probs=54.7
Q ss_pred EEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCC---CCHHHHHHHHHHHHHhccCCCce
Q psy11941 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINK---PSPTTLKKCLETLRKYCIGDRSV 98 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~---~~~~~~~~~~~~l~~l~~~~~~~ 98 (313)
||++++||+|++.... +....|.+.++. .+.++|.|+++||+||... ........+.+.|+++.
T Consensus 1 M~i~~iSDlHl~~~~~------~~~~~~~~~l~~-~~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~------ 67 (241)
T PRK05340 1 MPTLFISDLHLSPERP------AITAAFLRFLRG-EARQADALYILGDLFEAWIGDDDPSPFAREIAAALKALS------ 67 (241)
T ss_pred CcEEEEeecCCCCCCh------hHHHHHHHHHHh-hhccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHH------
Confidence 7999999999987422 222334444432 3568999999999998521 11133455566666553
Q ss_pred eeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCC
Q psy11941 99 FIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~ 139 (313)
..++||++++||||...
T Consensus 68 ------------------------~~g~~v~~v~GNHD~~~ 84 (241)
T PRK05340 68 ------------------------DSGVPCYFMHGNRDFLL 84 (241)
T ss_pred ------------------------HcCCeEEEEeCCCchhh
Confidence 34589999999999865
No 30
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=99.55 E-value=3.7e-13 Score=122.90 Aligned_cols=232 Identities=15% Similarity=0.076 Sum_probs=121.7
Q ss_pred EEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCC-CCCCCHHHHHHHHHHHHHhccCCCceee
Q psy11941 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFH-INKPSPTTLKKCLETLRKYCIGDRSVFI 100 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 100 (313)
++|++++|+=.+.. .......+.+.+.+.+.++|+||++||++. .+... +....+.+.+..+.
T Consensus 1 ~~f~~~gD~g~~~~-------~~~~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~-~~~~~~~~~~~~~~-------- 64 (277)
T cd07378 1 LRFLALGDWGGGGT-------AGQKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGS-VDDPRFETTFEDVY-------- 64 (277)
T ss_pred CeEEEEeecCCCCC-------HHHHHHHHHHHHHHHhcCCCEEEeCCCccccCCCCC-CcchHHHHHHHHHc--------
Confidence 47899999876511 122344556666677789999999999973 33221 11111211222110
Q ss_pred eeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEecccccCCceeeecEEEeeC--
Q psy11941 101 DVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKN-- 178 (313)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 178 (313)
+ .+..++|+++++||||........ ....... ...++..... .+.+..+
T Consensus 65 ---~----------------~~~~~~P~~~v~GNHD~~~~~~~~--~~~~~~~----~~~~~~~~~~----~y~~~~~~~ 115 (277)
T cd07378 65 ---S----------------APSLQVPWYLVLGNHDYSGNVSAQ--IDYTKRP----NSPRWTMPAY----YYRVSFPFP 115 (277)
T ss_pred ---c----------------chhhcCCeEEecCCcccCCCchhe--eehhccC----CCCCccCcch----heEEEeecC
Confidence 0 002368999999999998632211 0011100 0000100000 0111111
Q ss_pred --CeEEEEEecC--------------------CCchHHHHHHhhhcchhccCCCCCCCcceEEEeeccccCCCCcCc---
Q psy11941 179 --ETKVAIFGLG--------------------YVKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTVKN--- 233 (313)
Q Consensus 179 --~~~~~i~gl~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~~~~--- 233 (313)
+..+.++++. ....+++.|+.+.++. ..+..+|+++|+|+...+....
T Consensus 116 ~~~~~~~~i~LDt~~~~~~~~~~~~~~~~~~~~~~~~Q~~wL~~~L~~-------~~~~~~iv~~H~P~~~~~~~~~~~~ 188 (277)
T cd07378 116 SSDTTVEFIMIDTVPLCGNSDDIASPYGPPNGKLAEEQLAWLEKTLAA-------STADWKIVVGHHPIYSSGEHGPTSC 188 (277)
T ss_pred CCCCEEEEEEEeChhHcCccccccccccCcchhhHHHHHHHHHHHHHh-------cCCCeEEEEeCccceeCCCCCCcHH
Confidence 1233344332 2345677777655321 1225899999999764332110
Q ss_pred ----cccccCCCcccEEEeCCccCccccCCCCCCCcccEEecCCCceec--ccc----------CccccccEEEEEEeCC
Q psy11941 234 ----IAEDSIPSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATS--LCA----------GEAVQKKCGILMCNKQ 297 (313)
Q Consensus 234 ----~~~~~~~~~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS~~~~~--~~e----------~~~~~~g~~vv~~~~~ 297 (313)
+...+.+.+++++++||.|..+..... ..+...+.+|+..... ... ......||.++++..+
T Consensus 189 ~~~~l~~l~~~~~v~~vl~GH~H~~~~~~~~--~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~Gy~~i~v~~~ 266 (277)
T cd07378 189 LVDRLLPLLKKYKVDAYLSGHDHNLQHIKDD--GSGTSFVVSGAGSKARPSVKHIDKVPQFFSGFTSSGGGFAYLELTKE 266 (277)
T ss_pred HHHHHHHHHHHcCCCEEEeCCcccceeeecC--CCCcEEEEeCCCcccCCCCCccCcccccccccccCCCCEEEEEEecC
Confidence 111122356899999999998865421 1245555566543211 000 0113589999999999
Q ss_pred ceeEEEEeCC
Q psy11941 298 NYKLVPRSLE 307 (313)
Q Consensus 298 ~~~~~~i~l~ 307 (313)
.+.++++..+
T Consensus 267 ~l~~~~~~~~ 276 (277)
T cd07378 267 ELTVRFYDAD 276 (277)
T ss_pred EEEEEEECCC
Confidence 9999988654
No 31
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.52 E-value=1.4e-13 Score=123.31 Aligned_cols=75 Identities=23% Similarity=0.309 Sum_probs=54.0
Q ss_pred EEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeeee
Q psy11941 23 RIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDV 102 (313)
Q Consensus 23 kilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 102 (313)
||+++||+|+..... .....++++++.+.+.++|+||++||+++... +. ..+++.+.++
T Consensus 1 ki~~iSDlH~~~~~~------~~~~~l~~~~~~~~~~~~d~vv~~GDl~~~~~---~~-~~~~~~l~~~----------- 59 (239)
T TIGR03729 1 KIAFSSDLHIDLNHF------DTEEMLETLAQYLKKQKIDHLHIAGDISNDFQ---RS-LPFIEKLQEL----------- 59 (239)
T ss_pred CEEEEEeecCCCCCC------CHHHHHHHHHHHHHhcCCCEEEECCccccchh---hH-HHHHHHHHHh-----------
Confidence 699999999863211 22335788999998999999999999998642 22 2333444421
Q ss_pred ccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCC
Q psy11941 103 ISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~ 139 (313)
.+.|+++|+||||...
T Consensus 60 ---------------------~~~pv~~v~GNHD~~~ 75 (239)
T TIGR03729 60 ---------------------KGIKVTFNAGNHDMLK 75 (239)
T ss_pred ---------------------cCCcEEEECCCCCCCC
Confidence 3579999999999873
No 32
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=99.52 E-value=2.6e-13 Score=115.10 Aligned_cols=166 Identities=16% Similarity=0.167 Sum_probs=108.6
Q ss_pred eEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceee
Q psy11941 21 TIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFI 100 (313)
Q Consensus 21 ~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 100 (313)
||||+.+||+|.... .-.+..+.....++|+||++||+...... . .|..
T Consensus 1 ~m~ilviSDtH~~~~------------~~~~~~~~~~~~~~d~vih~GD~~~~~~~-----~----~l~~---------- 49 (172)
T COG0622 1 MMKILVISDTHGPLR------------AIEKALKIFNLEKVDAVIHAGDSTSPFTL-----D----ALEG---------- 49 (172)
T ss_pred CcEEEEEeccCCChh------------hhhHHHHHhhhcCCCEEEECCCcCCccch-----H----Hhhc----------
Confidence 699999999996553 12456666678899999999999876532 1 1211
Q ss_pred eeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEecccccCCceeeecEEEeeCCe
Q psy11941 101 DVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNET 180 (313)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (313)
....++++|.||+|....... +. +. ..+
T Consensus 50 ----------------------~~~~~i~~V~GN~D~~~~~~~---------------~p-~~---------~~~----- 77 (172)
T COG0622 50 ----------------------GLAAKLIAVRGNCDGEVDQEE---------------LP-EE---------LVL----- 77 (172)
T ss_pred ----------------------ccccceEEEEccCCCcccccc---------------CC-hh---------HeE-----
Confidence 014689999999999762100 00 00 000
Q ss_pred EEEEEecCCCchHHHHHHhhhcchhccCCCCCCCcceEEEeeccccCCC-CcCccccccCCCcccEEEeCCccCccccCC
Q psy11941 181 KVAIFGLGYVKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERG-TVKNIAEDSIPSFFHFILWGHEHECRIKPE 259 (313)
Q Consensus 181 ~~~i~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~-~~~~~~~~~~~~~~d~v~~GH~H~~~~~~~ 259 (313)
...+ .+|+++|+...... ....+.......++|.++.||+|.+....
T Consensus 78 ------------------------------~~~g-~ki~l~HGh~~~~~~~~~~l~~la~~~~~Dvli~GHTH~p~~~~- 125 (172)
T COG0622 78 ------------------------------EVGG-VKIFLTHGHLYFVKTDLSLLEYLAKELGADVLIFGHTHKPVAEK- 125 (172)
T ss_pred ------------------------------EECC-EEEEEECCCccccccCHHHHHHHHHhcCCCEEEECCCCcccEEE-
Confidence 0124 88999998543211 10111111123568999999999999764
Q ss_pred CCCCCcccEEecCCCceeccccCccccccEEEEEEeCCceeEEEEeCCC
Q psy11941 260 YNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPRSLET 308 (313)
Q Consensus 260 ~~~~~~~~i~~~GS~~~~~~~e~~~~~~g~~vv~~~~~~~~~~~i~l~~ 308 (313)
.++..++||||+.....+ .+++|.++++++..+.+.+.....
T Consensus 126 ---~~~i~~vNPGS~s~pr~~----~~~sy~il~~~~~~~~~~~~~~~~ 167 (172)
T COG0622 126 ---VGGILLVNPGSVSGPRGG----NPASYAILDVDNLEVEVLFLERDR 167 (172)
T ss_pred ---ECCEEEEcCCCcCCCCCC----CCcEEEEEEcCCCEEEEEEeeccc
Confidence 256789999998777543 356999999998888777765543
No 33
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=99.51 E-value=1.1e-12 Score=120.62 Aligned_cols=236 Identities=12% Similarity=0.074 Sum_probs=124.6
Q ss_pred CCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCC-CHHHHHHHHHHHHHhccCCCc
Q psy11941 19 RNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKP-SPTTLKKCLETLRKYCIGDRS 97 (313)
Q Consensus 19 ~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~-~~~~~~~~~~~l~~l~~~~~~ 97 (313)
...+||++++|+|.+.. ....+++++.+. ..++|+||++||+...... ..+....+.+.++.+
T Consensus 2 ~~~~~f~v~gD~~~~~~--------~~~~~~~~l~~~--~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~------ 65 (294)
T cd00839 2 DTPFKFAVFGDMGQNTN--------NSTNTLDHLEKE--LGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPL------ 65 (294)
T ss_pred CCcEEEEEEEECCCCCC--------CcHHHHHHHHhc--cCCccEEEEcCchhhhcCCccchhHHHHHHHHHHH------
Confidence 35789999999997621 122344444443 4789999999999965432 113455566666654
Q ss_pred eeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEecccccCCceeeecEEEee
Q psy11941 98 VFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQK 177 (313)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 177 (313)
...+|+++++||||.............+...... ... ...... ....+..
T Consensus 66 -------------------------~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~---~~Ysf~~ 115 (294)
T cd00839 66 -------------------------ASYVPYMVTPGNHEADYNFSFYKIKAFFPRFRFP-HSP-SGSTSN---LWYSFDV 115 (294)
T ss_pred -------------------------HhcCCcEEcCcccccccCCCCccccccccccccc-CCC-CCCCCC---ceEEEee
Confidence 2358999999999997643221100000000000 000 000000 0122333
Q ss_pred CCeEEEEEecC--------CCchHHHHHHhhhcchhccCCCCCCCcceEEEeeccccCCCCcCc-------c---ccccC
Q psy11941 178 NETKVAIFGLG--------YVKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTVKN-------I---AEDSI 239 (313)
Q Consensus 178 ~~~~~~i~gl~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~~~~-------~---~~~~~ 239 (313)
++ +.++++. ....+++.|+.+.+.. . . .......|+++|+|+...+.... . ...++
T Consensus 116 g~--v~fi~Lds~~~~~~~~~~~~q~~WL~~~L~~--~-~-~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~ll 189 (294)
T cd00839 116 GP--VHFVSLSTEVDFYGDGPGSPQYDWLEADLAK--V-D-RSKTPWIIVMGHRPMYCSNTDHDDCIEGEKMRAALEDLF 189 (294)
T ss_pred CC--EEEEEEecccccccCCCCcHHHHHHHHHHHH--h-c-ccCCCeEEEEeccCcEecCccccccchhHHHHHHHHHHH
Confidence 32 3344432 4567888888766432 1 1 11223688899998754322110 0 01222
Q ss_pred -CCcccEEEeCCccCccccCC-------------CCCCCcccEEecCCC---ceeccccC--------ccccccEEEEEE
Q psy11941 240 -PSFFHFILWGHEHECRIKPE-------------YNTKQRFHVCQPGSP---VATSLCAG--------EAVQKKCGILMC 294 (313)
Q Consensus 240 -~~~~d~v~~GH~H~~~~~~~-------------~~~~~~~~i~~~GS~---~~~~~~e~--------~~~~~g~~vv~~ 294 (313)
+.+++++++||.|..+.... .+..+...|+ .|+. ........ .....||.++++
T Consensus 190 ~~~~v~~vl~GH~H~y~r~~p~~~~~~~~~~~~~~~~~g~~yiv-~G~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 268 (294)
T cd00839 190 YKYGVDLVLSGHVHAYERTCPVYNGTVVGDCNPYSNPKGPVHIV-IGAGGNDEGLDPFSAPPPAWSAFRESDYGFGRLTV 268 (294)
T ss_pred HHhCCCEEEEccceeeEeechhhCCEeccccccccCCCccEEEE-ECCCccccCcCcccCCCCCceEEEeccCCEEEEEE
Confidence 46799999999999875321 0112222332 4432 22111110 123578999999
Q ss_pred eCC-ceeEEEEeCC
Q psy11941 295 NKQ-NYKLVPRSLE 307 (313)
Q Consensus 295 ~~~-~~~~~~i~l~ 307 (313)
.++ .++++++...
T Consensus 269 ~~~t~l~~~~~~~~ 282 (294)
T cd00839 269 HNSTHLHFEWIRND 282 (294)
T ss_pred EecCeEEEEEEECC
Confidence 876 7888887644
No 34
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=99.49 E-value=6.5e-14 Score=121.07 Aligned_cols=207 Identities=21% Similarity=0.294 Sum_probs=101.2
Q ss_pred eEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHH------------------
Q psy11941 21 TIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLK------------------ 82 (313)
Q Consensus 21 ~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~------------------ 82 (313)
.=|||-+||+| ..++.++++++.+.+.++|+|+++||+......+ ..+.
T Consensus 5 ~~kilA~s~~~------------g~~e~l~~l~~~~~e~~~D~~v~~G~~~~~~a~~-~e~~~a~~~~r~p~k~~i~~e~ 71 (255)
T PF14582_consen 5 VRKILAISNFR------------GDFELLERLVEVIPEKGPDAVVFVGDLLKAEARS-DEYERAQEEQREPDKSEINEEE 71 (255)
T ss_dssp --EEEEEE--T------------T-HHHHHHHHHHHHHHT-SEEEEES-SS-TCHHH-HHHHHHHHTT----THHHHHHH
T ss_pred chhheeecCcc------------hHHHHHHHHHhhccccCCCEEEEeccccccchhh-hHHHHHhhhccCcchhhhhhhh
Confidence 45899999999 3345688889999999999999999998765332 2222
Q ss_pred -----HHHHHHHHhccCCCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCC---
Q psy11941 83 -----KCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSG--- 154 (313)
Q Consensus 83 -----~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~--- 154 (313)
.+..+|+.|. ..++|+++||||||.+... .+....+..
T Consensus 72 ~~~~e~~~~ff~~L~------------------------------~~~~p~~~vPG~~Dap~~~----~lr~a~~~e~v~ 117 (255)
T PF14582_consen 72 CYDSEALDKFFRILG------------------------------ELGVPVFVVPGNMDAPERF----FLREAYNAEIVT 117 (255)
T ss_dssp HHHHHHHHHHHHHHH------------------------------CC-SEEEEE--TTS-SHHH----HHHHHHHCCCC-
T ss_pred hhhHHHHHHHHHHHH------------------------------hcCCcEEEecCCCCchHHH----HHHHHhccceec
Confidence 2334555443 5789999999999998731 111111111
Q ss_pred -CeeEecccccCCceeeecEEEeeCCeEEEEEecC-----C--CchHHHH---HHhhhcchhccCCCCCCCcceEEEeec
Q psy11941 155 -LVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLG-----Y--VKDERLC---NMIKHNKVKYMKPTDDKDIIYILVLHQ 223 (313)
Q Consensus 155 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~gl~-----~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Ilv~H~ 223 (313)
.++... +. +....| .+.|.|++ + .....+. | ..+..++.++. .++...|+++|.
T Consensus 118 p~~~~vH-----~s-----f~~~~g--~y~v~G~GGeI~~~~~~~~~~LrYP~w-eaey~lk~l~e--lk~~r~IlLfht 182 (255)
T PF14582_consen 118 PHIHNVH-----ES-----FFFWKG--EYLVAGMGGEITDDQREEEFKLRYPAW-EAEYSLKFLRE--LKDYRKILLFHT 182 (255)
T ss_dssp TTEEE-C-----TC-----EEEETT--TEEEEEE-SEEESSS-BCSSS-EEEHH-HHHHHHGGGGG--CTSSEEEEEESS
T ss_pred cceeeee-----ee-----ecccCC--cEEEEecCccccCCCccccccccchHH-HHHHHHHHHHh--cccccEEEEEec
Confidence 111110 11 111111 23344433 0 0000000 1 00111122222 334488999999
Q ss_pred cc-cCCC----CcCccccccCCCcccEEEeCCccCccccCCCCCCCcccEEecCCCceeccccCccccccEEEEEEeCCc
Q psy11941 224 NR-PERG----TVKNIAEDSIPSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQN 298 (313)
Q Consensus 224 ~~-~~~~----~~~~~~~~~~~~~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS~~~~~~~e~~~~~~g~~vv~~~~~~ 298 (313)
++ ...+ +...+..-+-....+++++||+|..+... ..+++.+++||| +++ .+|.+|++..+.
T Consensus 183 pPd~~kg~~h~GS~~V~dlIk~~~P~ivl~Ghihe~~~~e---~lG~TlVVNPGs-----L~~-----G~yAvI~l~~~~ 249 (255)
T PF14582_consen 183 PPDLHKGLIHVGSAAVRDLIKTYNPDIVLCGHIHESHGKE---SLGKTLVVNPGS-----LAE-----GDYAVIDLEQDK 249 (255)
T ss_dssp -BTBCTCTBTTSBHHHHHHHHHH--SEEEE-SSS-EE--E---EETTEEEEE--B-----GGG-----TEEEEEETTTTE
T ss_pred CCccCCCcccccHHHHHHHHHhcCCcEEEecccccchhhH---HhCCEEEecCcc-----ccc-----CceeEEEecccc
Confidence 98 3222 11222222223567999999999987432 348899999999 332 469999999876
Q ss_pred eeEE
Q psy11941 299 YKLV 302 (313)
Q Consensus 299 ~~~~ 302 (313)
+...
T Consensus 250 v~~g 253 (255)
T PF14582_consen 250 VEFG 253 (255)
T ss_dssp EEEE
T ss_pred cccC
Confidence 6543
No 35
>KOG1432|consensus
Probab=99.46 E-value=6.2e-12 Score=114.52 Aligned_cols=244 Identities=16% Similarity=0.285 Sum_probs=131.5
Q ss_pred CCCCCeEEEEEeeccccCcccCCcCc-----------cchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHH
Q psy11941 16 YDDRNTIRIMIASDIHLGYLETDRER-----------GNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKC 84 (313)
Q Consensus 16 ~~~~~~mkilh~SD~Hlg~~~~~~~~-----------~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~ 84 (313)
+.....+||+++||+|+|.....+.+ .......+++++ ..++||+||++||+....+ ...+...+
T Consensus 48 ~~~~g~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL---~sE~PDlVVfTGD~i~g~~-t~Da~~sl 123 (379)
T KOG1432|consen 48 FREDGTFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVL---ASEKPDLVVFTGDNIFGHS-TQDAATSL 123 (379)
T ss_pred ecCCCceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHH---hccCCCEEEEeCCcccccc-cHhHHHHH
Confidence 46778999999999999986332221 111222333443 4689999999999998843 23344555
Q ss_pred HHHHHHhccCCCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCC---------
Q psy11941 85 LETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGL--------- 155 (313)
Q Consensus 85 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~--------- 155 (313)
++++. |+++.++|+.++.||||......+.....++...++
T Consensus 124 ~kAva------------------------------P~I~~~IPwA~~lGNHDdes~ltr~ql~~~i~~lP~s~~~v~p~d 173 (379)
T KOG1432|consen 124 MKAVA------------------------------PAIDRKIPWAAVLGNHDDESDLTRLQLMKFISKLPYSLSQVNPPD 173 (379)
T ss_pred HHHhh------------------------------hHhhcCCCeEEEecccccccccCHHHHHHHHhcCCCccccCCCcc
Confidence 66665 555789999999999999875433222222222221
Q ss_pred -----------ee--Eeccccc-CCc-eeeecEEEeeCCeEE---EEEecCCCchHHHHHHhhhcchhccCCCCCCC-cc
Q psy11941 156 -----------VN--YFGKCTN-LNE-ITLNPLIIQKNETKV---AIFGLGYVKDERLCNMIKHNKVKYMKPTDDKD-II 216 (313)
Q Consensus 156 -----------~~--~~~~~~~-~~~-~~~~~~~l~~~~~~~---~i~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 216 (313)
.+ +.+.... ... -.+..+.+..+.... ..++..++...+..|+..... +...+..... .+
T Consensus 174 g~~~~~~g~gnyn~~i~~~~ds~~~~~sv~~lyfld~~~~~s~~~~~~~Ydwik~sq~~wl~~~~~-~~~~~~~~~~P~p 252 (379)
T KOG1432|consen 174 GHMYIIDGFGNYNLQIEGAIDSELENKSVFNLYFLDSSSYTSVPPLLPGYDWIKESQLEWLSDTSK-EFKEPNSKYNPQP 252 (379)
T ss_pred cceeeeecccceEEEeccCCCcccccCceeeEEEEecCCcccccccccCccchhhhhHHHHhhhhh-hhhcccCccCCCC
Confidence 10 0000000 000 000112222221111 123445666666666544321 1111111111 27
Q ss_pred eEEEeeccccCCC---------C--cC---------ccccccC-CCcccEEEeCCccCccccCCCCCCCcccEEecCCCc
Q psy11941 217 YILVLHQNRPERG---------T--VK---------NIAEDSI-PSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPV 275 (313)
Q Consensus 217 ~Ilv~H~~~~~~~---------~--~~---------~~~~~~~-~~~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS~~ 275 (313)
-+++.|.|..+.. + .+ .....+. ...++.|++||-|..-.=- ...+..+.||.|+..
T Consensus 253 ~La~~HIP~~E~~~~~~~tp~~g~~~E~~~~~~~~sg~~~~L~~r~~Vk~vf~GHdHvNDfC~--~~k~~~wlCygGgaG 330 (379)
T KOG1432|consen 253 GLAFFHIPLPEFLELESKTPLIGVFQEGVSASKHNSGFLTTLVNRGNVKGVFCGHDHVNDFCG--ELKGELWLCYGGGAG 330 (379)
T ss_pred ceEEEEcccHHHhhccCCCcccceeeccccccccccHHHHHHHhccCcceEEeccccccceec--ccCCeEEEEecCCCc
Confidence 7899999864211 0 00 0011122 4568999999999744311 112448999999966
Q ss_pred eeccccCccccccEEEEEEeCC
Q psy11941 276 ATSLCAGEAVQKKCGILMCNKQ 297 (313)
Q Consensus 276 ~~~~~e~~~~~~g~~vv~~~~~ 297 (313)
-..++-++ +.++.-+++++..
T Consensus 331 yggYg~~g-w~Rr~Rv~e~d~~ 351 (379)
T KOG1432|consen 331 YGGYGIGG-WERRARVFELDLN 351 (379)
T ss_pred cCCcCcCC-cccceEEEEcccc
Confidence 55555333 6788888888853
No 36
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=99.42 E-value=1.9e-12 Score=118.38 Aligned_cols=82 Identities=22% Similarity=0.236 Sum_probs=59.4
Q ss_pred CCCCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCC-CCCCHHHHHHHHHHHHHhccCC
Q psy11941 17 DDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHI-NKPSPTTLKKCLETLRKYCIGD 95 (313)
Q Consensus 17 ~~~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~-~~~~~~~~~~~~~~l~~l~~~~ 95 (313)
......||+|+||+|+.... ....+.+..+.++.+|+|+++||+++. .. +....+.+.|++|
T Consensus 40 ~~~~~~~iv~lSDlH~~~~~----------~~~~~~~~~i~~~~~DlivltGD~~~~~~~---~~~~~~~~~L~~L---- 102 (284)
T COG1408 40 ASLQGLKIVQLSDLHSLPFR----------EEKLALLIAIANELPDLIVLTGDYVDGDRP---PGVAALALFLAKL---- 102 (284)
T ss_pred cccCCeEEEEeehhhhchhh----------HHHHHHHHHHHhcCCCEEEEEeeeecCCCC---CCHHHHHHHHHhh----
Confidence 44457889999999987743 223445555556667999999999996 33 3455666667665
Q ss_pred CceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCC
Q psy11941 96 RSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPE 142 (313)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~ 142 (313)
....++|+|.||||+.....
T Consensus 103 ---------------------------~~~~gv~av~GNHd~~~~~~ 122 (284)
T COG1408 103 ---------------------------KAPLGVFAVLGNHDYGVDRS 122 (284)
T ss_pred ---------------------------hccCCEEEEecccccccccc
Confidence 35679999999999988543
No 37
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.41 E-value=9.4e-13 Score=111.21 Aligned_cols=42 Identities=24% Similarity=0.479 Sum_probs=29.9
Q ss_pred EEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCC
Q psy11941 24 IMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKP 76 (313)
Q Consensus 24 ilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~ 76 (313)
|+++||+|++...... .+.+.+.+.++|+|+++||+++....
T Consensus 1 ~~~iSDlH~~~~~~~~-----------~~~~~~~~~~~d~li~~GDi~~~~~~ 42 (166)
T cd07404 1 IQYLSDLHLEFEDNLA-----------DLLNFPIAPDADILVLAGDIGYLTDA 42 (166)
T ss_pred CceEccccccCccccc-----------cccccCCCCCCCEEEECCCCCCCcch
Confidence 5789999998743211 11144567789999999999987643
No 38
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.41 E-value=1.1e-12 Score=107.04 Aligned_cols=47 Identities=26% Similarity=0.280 Sum_probs=35.3
Q ss_pred EEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHH
Q psy11941 23 RIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRK 90 (313)
Q Consensus 23 kilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~ 90 (313)
||+++||+|.... .....++|+|+++||+++.+.+ +.+..+.+++++
T Consensus 1 ~i~~isD~H~~~~-------------------~~~~~~~D~vi~~GD~~~~~~~--~~~~~~~~~l~~ 47 (135)
T cd07379 1 RFVCISDTHSRHR-------------------TISIPDGDVLIHAGDLTERGTL--EELQKFLDWLKS 47 (135)
T ss_pred CEEEEeCCCCCCC-------------------cCcCCCCCEEEECCCCCCCCCH--HHHHHHHHHHHh
Confidence 6899999996542 1134679999999999987654 556777777774
No 39
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=99.40 E-value=2.6e-12 Score=114.54 Aligned_cols=77 Identities=23% Similarity=0.375 Sum_probs=49.1
Q ss_pred EEeeccccCcccCCcCccchhHH-HHHHHHHHHHhcCCCEEEEcCCcCCCC---CCCHHHHHHHHHHHHHhccCCCceee
Q psy11941 25 MIASDIHLGYLETDRERGNDSFV-SFEEILEQALDQEVDMVLLGGDLFHIN---KPSPTTLKKCLETLRKYCIGDRSVFI 100 (313)
Q Consensus 25 lh~SD~Hlg~~~~~~~~~~~~~~-~l~~ii~~~~~~~~d~vv~~GDlf~~~---~~~~~~~~~~~~~l~~l~~~~~~~~~ 100 (313)
+++||+|++.... +..+ .++.+.+.+ .++|.|+++||+|+.. .........+.+.|+++.
T Consensus 2 ~~iSDlHl~~~~~------~~~~~~l~~l~~~~--~~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~-------- 65 (231)
T TIGR01854 2 LFISDLHLSPERP------DITALFLDFLREEA--RKADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVS-------- 65 (231)
T ss_pred eEEEecCCCCCCh------hHHHHHHHHHHhhh--ccCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHH--------
Confidence 7999999996421 1111 222332222 2799999999999852 111233455666666553
Q ss_pred eeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCC
Q psy11941 101 DVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~ 139 (313)
..++||++|+||||...
T Consensus 66 ----------------------~~~~~v~~v~GNHD~~~ 82 (231)
T TIGR01854 66 ----------------------DQGVPCYFMHGNRDFLI 82 (231)
T ss_pred ----------------------HCCCeEEEEcCCCchhh
Confidence 34689999999999864
No 40
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=99.37 E-value=1.4e-11 Score=109.48 Aligned_cols=65 Identities=28% Similarity=0.342 Sum_probs=45.8
Q ss_pred EEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeee
Q psy11941 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFID 101 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 101 (313)
+||+++||+|..... ...+.+.+.++|+|+++||+.+.. ..+.+.|++
T Consensus 1 ~rIa~isDiHg~~~~--------------~~~~~l~~~~pD~Vl~~GDi~~~~-------~~~~~~l~~----------- 48 (238)
T cd07397 1 LRIAIVGDVHGQWDL--------------EDIKALHLLQPDLVLFVGDFGNES-------VQLVRAISS----------- 48 (238)
T ss_pred CEEEEEecCCCCchH--------------HHHHHHhccCCCEEEECCCCCcCh-------HHHHHHHHh-----------
Confidence 589999999954321 123455667899999999998542 234445553
Q ss_pred eccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCC
Q psy11941 102 VISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSG 140 (313)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~ 140 (313)
...|++++.||||....
T Consensus 49 ----------------------l~~p~~~V~GNHD~~~~ 65 (238)
T cd07397 49 ----------------------LPLPKAVILGNHDAWYD 65 (238)
T ss_pred ----------------------CCCCeEEEcCCCccccc
Confidence 34689999999999774
No 41
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=99.32 E-value=1.3e-10 Score=110.02 Aligned_cols=241 Identities=12% Similarity=0.067 Sum_probs=132.2
Q ss_pred CCCCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCC
Q psy11941 17 DDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDR 96 (313)
Q Consensus 17 ~~~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~ 96 (313)
.-...++++.++||=-| ...+....+.+-+.|.+.++|+|+-+||-|..+-.+ ..-.++.+.+...
T Consensus 22 ~~~~~l~F~~vGDwG~g--------~~~Q~~VA~~M~~~~~~~~~~FVls~GDNF~~Gv~s-v~Dp~f~~~FE~v----- 87 (394)
T PTZ00422 22 SVKAQLRFASLGNWGTG--------SKQQKLVASYLKQYAKNERVTFLVSPGSNFPGGVDG-LNDPKWKHCFENV----- 87 (394)
T ss_pred ccCCeEEEEEEecCCCC--------chhHHHHHHHHHHHHHhCCCCEEEECCccccCCCCC-ccchhHHhhHhhh-----
Confidence 45568899999998632 235556677788888899999999999999654332 2334455555432
Q ss_pred ceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhC------------C-CeeEecccc
Q psy11941 97 SVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNS------------G-LVNYFGKCT 163 (313)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~------------~-~~~~~~~~~ 163 (313)
|+.++=..++|++++.||||+.+.... .++..... . ......+|.
T Consensus 88 --------------------Y~~~s~~L~~Pwy~vLGNHDy~Gn~~A--Qi~r~~~~y~~~~~~~~~~y~~~~~~~~RW~ 145 (394)
T PTZ00422 88 --------------------YSEESGDMQIPFFTVLGQADWDGNYNA--ELLKGQNVYLNGHGQTDIEYDSNNDIYPKWI 145 (394)
T ss_pred --------------------ccCcchhhCCCeEEeCCcccccCCchh--hhccccccccccccccccccccccccCCCcc
Confidence 233320146899999999999764221 00000000 0 000112232
Q ss_pred cCCceee--ecEE-------Eee--CCeEEEEEec---------CC--CchHHHHHHhhhcchhccCCCCCCCcceEEEe
Q psy11941 164 NLNEITL--NPLI-------IQK--NETKVAIFGL---------GY--VKDERLCNMIKHNKVKYMKPTDDKDIIYILVL 221 (313)
Q Consensus 164 ~~~~~~~--~~~~-------l~~--~~~~~~i~gl---------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~ 221 (313)
-...+.. .++. +.. .+..+.++-+ +| ..+.+..++.+++.. . ......+|++.
T Consensus 146 mP~~yY~~~~~f~~~~~~~~~~~~~~~~~v~fifiDT~~l~~~~~~~~~~~~~w~~L~~~L~~---a--~k~a~WkIVvG 220 (394)
T PTZ00422 146 MPNYWYHYFTHFTDTSGPSLLKSGHKDMSVAFIFIDTWILSSSFPYKKVSERAWQDLKATLEY---A--PKIADYIIVVG 220 (394)
T ss_pred CCchhheeeeeeecccccccccccCCCCEEEEEEEECchhcccCCccccCHHHHHHHHHHHHh---h--ccCCCeEEEEe
Confidence 1111100 0000 000 1122333322 12 233445555444321 1 12234999999
Q ss_pred eccccCCCC---cC----ccccccCCCcccEEEeCCccCccccCCCCCCCcccEEecCCCce-----------eccccCc
Q psy11941 222 HQNRPERGT---VK----NIAEDSIPSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVA-----------TSLCAGE 283 (313)
Q Consensus 222 H~~~~~~~~---~~----~~~~~~~~~~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS~~~-----------~~~~e~~ 283 (313)
|+|+...|. .. .+.+-+.+.++|++++||.|..+.... ++...+.+|+-.. ..|.
T Consensus 221 HhPIySsG~hg~~~~L~~~L~PLL~ky~VdlYisGHDH~lq~i~~----~gt~yIvSGaGs~~~~~~~~~~~~s~F~--- 293 (394)
T PTZ00422 221 DKPIYSSGSSKGDSYLSYYLLPLLKDAQVDLYISGYDRNMEVLTD----EGTAHINCGSGGNSGRKSIMKNSKSLFY--- 293 (394)
T ss_pred cCceeecCCCCCCHHHHHHHHHHHHHcCcCEEEEccccceEEecC----CCceEEEeCccccccCCCCCCCCCccee---
Confidence 999875543 11 112222346899999999999988742 3344445665211 1121
Q ss_pred cccccEEEEEEeCCceeEEEEe
Q psy11941 284 AVQKKCGILMCNKQNYKLVPRS 305 (313)
Q Consensus 284 ~~~~g~~vv~~~~~~~~~~~i~ 305 (313)
.+..||..+++..+.+.++++.
T Consensus 294 ~~~~GF~~~~l~~~~l~~~fid 315 (394)
T PTZ00422 294 SEDIGFCIHELNAEGMVTKFVS 315 (394)
T ss_pred cCCCCEEEEEEecCEEEEEEEe
Confidence 2457899999999999888884
No 42
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=99.30 E-value=9e-11 Score=106.32 Aligned_cols=202 Identities=19% Similarity=0.270 Sum_probs=109.5
Q ss_pred EEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCC-EEEEcCCcCCCCCCCHH-HHHHHHHHHHHhccCCCcee
Q psy11941 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVD-MVLLGGDLFHINKPSPT-TLKKCLETLRKYCIGDRSVF 99 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d-~vv~~GDlf~~~~~~~~-~~~~~~~~l~~l~~~~~~~~ 99 (313)
++|+|++|+| +.... .......+..+..+++..++++++ +++.+||+|+....+.. .-+...+.|+.
T Consensus 1 ~~il~~nd~~-~~~~~-~~~~~gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~--------- 69 (257)
T cd07406 1 FTILHFNDVY-EIAPL-DGGPVGGAARFATLRKQLRKENPNTLVLFSGDVLSPSLLSTATKGKQMVPVLNA--------- 69 (257)
T ss_pred CeEEEEccce-eeccc-CCCCcCCHHHHHHHHHHHHhcCCCEEEEECCCccCCccchhhcCCccHHHHHHh---------
Confidence 4899999999 33221 112233567788999999988888 77779999987533111 11334455553
Q ss_pred eeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCe----eEeccc--ccCCceeeecE
Q psy11941 100 IDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLV----NYFGKC--TNLNEITLNPL 173 (313)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~----~~~~~~--~~~~~~~~~~~ 173 (313)
.+. -++++||||+..+... ....+...++- ++.... ..... ...+.
T Consensus 70 ------------------------l~~-d~~~~GNHefd~g~~~--l~~~~~~~~~~~L~aNi~~~~~~~~~~~-~~~~~ 121 (257)
T cd07406 70 ------------------------LGV-DLACFGNHEFDFGEDQ--LQKRLGESKFPWLSSNVFDATGGGPLPN-GKESA 121 (257)
T ss_pred ------------------------cCC-cEEeecccccccCHHH--HHHHHhhCCCCEEEEEEEECCCCcccCC-CCCeE
Confidence 233 3567899999664322 22334444322 111110 01110 11235
Q ss_pred EEeeCCeEEEEEecCCCchH--------HH--HHHhhh--cchhccCCCCCCCcceEEEeeccccCCCCcCccccccCCC
Q psy11941 174 IIQKNETKVAIFGLGYVKDE--------RL--CNMIKH--NKVKYMKPTDDKDIIYILVLHQNRPERGTVKNIAEDSIPS 241 (313)
Q Consensus 174 ~l~~~~~~~~i~gl~~~~~~--------~~--~~~~~~--~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~~~~~~~~~~~~ 241 (313)
+++.++.++.|+|+...... .+ ....+. ..++.++. ...+ +-|+++|.+.... ..+... + .
T Consensus 122 i~~~~g~kIgviG~~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~~~~-~~~D-~iVvl~H~g~~~d---~~la~~-~-~ 194 (257)
T cd07406 122 IIERAGVKIGLLGLVEEEWLETLTIDPEYVRYRDYVETARELVDELRE-QGAD-LIIALTHMRLPND---KRLARE-V-P 194 (257)
T ss_pred EEEECCeEEEEEEEecccccccccCCCCcceEcCHHHHHHHHHHHHHh-CCCC-EEEEEeccCchhh---HHHHHh-C-C
Confidence 66778899999996432110 00 000000 00111121 2334 8999999965311 112122 2 5
Q ss_pred cccEEEeCCccCccccCCCCCCCcccEEecCC
Q psy11941 242 FFHFILWGHEHECRIKPEYNTKQRFHVCQPGS 273 (313)
Q Consensus 242 ~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS 273 (313)
++|+|+.||.|..+.. ..+...++++|+
T Consensus 195 ~iD~IlgGH~H~~~~~----~~~~t~vv~~g~ 222 (257)
T cd07406 195 EIDLILGGHDHEYILV----QVGGTPIVKSGS 222 (257)
T ss_pred CCceEEecccceeEee----eECCEEEEeCCc
Confidence 7999999999998743 235567777776
No 43
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=99.30 E-value=5.8e-11 Score=106.93 Aligned_cols=202 Identities=18% Similarity=0.263 Sum_probs=110.7
Q ss_pred EEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCC-EEEEcCCcCCCCCCCH-HHHHHHHHHHHHhccCCCcee
Q psy11941 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVD-MVLLGGDLFHINKPSP-TTLKKCLETLRKYCIGDRSVF 99 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d-~vv~~GDlf~~~~~~~-~~~~~~~~~l~~l~~~~~~~~ 99 (313)
++|+|+||+|...... -....+..+..+++..+++.+| +++.+||+++....+. ..-....+.|+.
T Consensus 1 l~i~~~sD~hg~~~~~---~~~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~--------- 68 (252)
T cd00845 1 LTILHTNDLHGHFEPA---GGVGGAARLATLIKEERAENENTLLLDAGDNFDGSPPSTATKGEANIELMNA--------- 68 (252)
T ss_pred CEEEEecccccCcccc---CCcCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchhccCCcHHHHHHHh---------
Confidence 5899999999333211 1224566788999999999898 6677999998865421 112334455542
Q ss_pred eeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEecccc-----cCCceeeecEE
Q psy11941 100 IDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCT-----NLNEITLNPLI 174 (313)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~ 174 (313)
.+. .+++.||||+..+... ....+...++..+..... ..........+
T Consensus 69 ------------------------~g~-d~~~~GNHe~d~g~~~--l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~~~i 121 (252)
T cd00845 69 ------------------------LGY-DAVTIGNHEFDYGLDA--LAELYKDANFPVLSANLYDKDTGTGPPWAKPYKI 121 (252)
T ss_pred ------------------------cCC-CEEeeccccccccHHH--HHHHHHhCCCCEEEEeeeccCCCCCCCCcCCeEE
Confidence 333 4456699998764332 223444444221111100 00111111245
Q ss_pred EeeCCeEEEEEecCCCchH--------------HHHHHhhhcchhccCCCCCCCcceEEEeeccccCCCCcCccccccCC
Q psy11941 175 IQKNETKVAIFGLGYVKDE--------------RLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTVKNIAEDSIP 240 (313)
Q Consensus 175 l~~~~~~~~i~gl~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~~~~~~~~~~~ 240 (313)
++.++.++.|+|+...... .....+.+ .... . ....+ +.|+++|.+.... ..+... +
T Consensus 122 ~~~~g~kIgiiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~-~~~~D-~vIvl~H~g~~~~---~~la~~-~- 192 (252)
T cd00845 122 IEVDGVKIGVIGLTTPDTPTYTPLGWIIGLPFEDLAEAVAV-AEEL-L-AEGAD-VIILLSHLGLDDD---EELAEE-V- 192 (252)
T ss_pred EEECCEEEEEEEeccccceeecCCCcccCceecCHHHHHHH-HHHH-H-hCCCC-EEEEEeccCccch---HHHHhc-C-
Confidence 6677889999886432110 00111100 0001 1 12334 9999999975431 111111 1
Q ss_pred CcccEEEeCCccCccccCCCCCCCcccEEecCC
Q psy11941 241 SFFHFILWGHEHECRIKPEYNTKQRFHVCQPGS 273 (313)
Q Consensus 241 ~~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS 273 (313)
.++|+|++||.|..+..+. ..++..++++|+
T Consensus 193 ~giDlvlggH~H~~~~~~~--~~~~~~v~~~g~ 223 (252)
T cd00845 193 PGIDVILGGHTHHLLEEPE--VVNGTLIVQAGK 223 (252)
T ss_pred CCccEEEcCCcCcccCCCc--ccCCEEEEeCCh
Confidence 5799999999999875421 235667777776
No 44
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=99.22 E-value=1.5e-10 Score=98.59 Aligned_cols=88 Identities=18% Similarity=0.214 Sum_probs=52.8
Q ss_pred EEeeccccCcccCCcCcc---------chhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCH-HHHHHHHHHHHHhccC
Q psy11941 25 MIASDIHLGYLETDRERG---------NDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSP-TTLKKCLETLRKYCIG 94 (313)
Q Consensus 25 lh~SD~Hlg~~~~~~~~~---------~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~-~~~~~~~~~l~~l~~~ 94 (313)
|.+||+|++....-+.++ ......++.+-..+.+.++|+|+++||+||...... .......+.++++..
T Consensus 1 llvaDpql~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~i~~~~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~- 79 (171)
T cd07384 1 LLVADPQILDETSYPPRPKIALRLTRFYTDAYMRRAFKTALQRLKPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFF- 79 (171)
T ss_pred CcccCccccCCCCCCCCchhhhHHHHHhHHHHHHHHHHHHHHhcCCCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhc-
Confidence 468999998754322211 111122334444455789999999999999876432 234434444433210
Q ss_pred CCceeeeeccCcccccccCCCccCCCCCC---CCCcEEEEcCCCCCCC
Q psy11941 95 DRSVFIDVISDPKLVMCNDHVNYMDPNLN---ISLPVFTINGNHDDPS 139 (313)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~pv~~I~GNHD~~~ 139 (313)
... .++|+++|+||||...
T Consensus 80 --------------------------~~~~~~~~~~~~~v~GNHD~g~ 101 (171)
T cd07384 80 --------------------------LPSNGLEDIPVYYVPGNHDIGY 101 (171)
T ss_pred --------------------------ccccccCCceEEEECCccccCC
Confidence 001 2579999999999965
No 45
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=99.22 E-value=6.5e-10 Score=99.85 Aligned_cols=77 Identities=23% Similarity=0.326 Sum_probs=50.3
Q ss_pred EEeeccccCcccCCcCccchhHHHHHHHHHHHHh-----cCCCEEEEcCCcCCCCCC------------CHHHHHHHHHH
Q psy11941 25 MIASDIHLGYLETDRERGNDSFVSFEEILEQALD-----QEVDMVLLGGDLFHINKP------------SPTTLKKCLET 87 (313)
Q Consensus 25 lh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~-----~~~d~vv~~GDlf~~~~~------------~~~~~~~~~~~ 87 (313)
+++||+|++..... .. .++.+++.... .++|.||++||+|+.... ..+.+..+.++
T Consensus 2 ~~iSDlHl~~~~~~----~~---~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (243)
T cd07386 2 VFISDVHVGSKTFL----ED---AFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEY 74 (243)
T ss_pred EEecccCCCchhhh----HH---HHHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHH
Confidence 78999999874321 12 23344444333 367999999999997321 01234556666
Q ss_pred HHHhccCCCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCC
Q psy11941 88 LRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 88 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~ 139 (313)
|+++ ..++||++++||||...
T Consensus 75 l~~L-------------------------------~~~~~v~~ipGNHD~~~ 95 (243)
T cd07386 75 LSDV-------------------------------PSHIKIIIIPGNHDAVR 95 (243)
T ss_pred HHhc-------------------------------ccCCeEEEeCCCCCccc
Confidence 6654 34689999999999864
No 46
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=99.18 E-value=1.7e-09 Score=98.92 Aligned_cols=204 Identities=20% Similarity=0.300 Sum_probs=111.6
Q ss_pred EEEEEeeccccCcccCCc----CccchhHHHHHHHHHHHHhcCCCEEEE-cCCcCCCCCCCHHH-------HHHHHHHHH
Q psy11941 22 IRIMIASDIHLGYLETDR----ERGNDSFVSFEEILEQALDQEVDMVLL-GGDLFHINKPSPTT-------LKKCLETLR 89 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~----~~~~~~~~~l~~ii~~~~~~~~d~vv~-~GDlf~~~~~~~~~-------~~~~~~~l~ 89 (313)
++|+|+||+|-....... ....-.+..+..++++.++++++.+++ +||+|+....+... -....+.|+
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~gg~~~l~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~~~~~~~~~~~~~~~~~ln 80 (277)
T cd07410 1 LRILATSDLHGNLLPYDYYTDKPDASGGLARVATLIKKARAENPNTLLIDNGDTIQGSPLADYYAKIEDGDPHPMIAAMN 80 (277)
T ss_pred CeEEEEeccccceeCccccCCCcCCccCHHHHHHHHHHHHhcCCCeEEEeCCccCCccHHHHHhhhcccCCCChHHHHHH
Confidence 589999999944322110 111245677889999999999999888 99999875321110 123455555
Q ss_pred HhccCCCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCe----eEecccccC
Q psy11941 90 KYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLV----NYFGKCTNL 165 (313)
Q Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~ 165 (313)
. .+.. +++.||||+..+... ....+...++- ++......
T Consensus 81 ~---------------------------------~g~d-~~~lGNHe~d~g~~~--l~~~~~~~~~~~l~aNv~~~~~~- 123 (277)
T cd07410 81 A---------------------------------LGYD-AGTLGNHEFNYGLDY--LDKVIKQANFPVLSANVIDADTG- 123 (277)
T ss_pred h---------------------------------cCCC-EEeecccCcccCHHH--HHHHHHhCCCCEEEEEEEeCCCC-
Confidence 3 3444 455699998764322 22334444321 11111000
Q ss_pred Cceeeec-EEEeeC-CeEEEEEecCCCc--h----H------------HHHHHhhhcchhccCCCCCCCcceEEEeeccc
Q psy11941 166 NEITLNP-LIIQKN-ETKVAIFGLGYVK--D----E------------RLCNMIKHNKVKYMKPTDDKDIIYILVLHQNR 225 (313)
Q Consensus 166 ~~~~~~~-~~l~~~-~~~~~i~gl~~~~--~----~------------~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~ 225 (313)
.. .+.| .+++.+ +.++.|+|+-... . . .+.+... .++. ...+ +-|+++|.+.
T Consensus 124 ~~-~~~~~~i~~~~~g~kVgviG~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~-----~lr~-~~~D-~IIvl~H~g~ 195 (277)
T cd07410 124 EP-FLKPYVILERDVGVKVGIIGLTTPQIPNWEKPNLIGGLKFTDPVETAKKYVP-----KLRA-EGAD-VVVVLAHGGF 195 (277)
T ss_pred Cc-ccCCEEEEEecCCCEEEEEecCCcccccccCcccCCCcEEcCHHHHHHHHHH-----HHHH-cCCC-EEEEEecCCc
Confidence 11 1233 455677 8999999963211 0 0 1111111 1221 1345 9999999976
Q ss_pred cCCC----CcCccccccCC--CcccEEEeCCccCccccCCCCCCCcccEEecCC
Q psy11941 226 PERG----TVKNIAEDSIP--SFFHFILWGHEHECRIKPEYNTKQRFHVCQPGS 273 (313)
Q Consensus 226 ~~~~----~~~~~~~~~~~--~~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS 273 (313)
.... ........+.+ .++|+|+.||.|.....+ ..+...++.+|+
T Consensus 196 ~~~~~~~~~~~~~~~~la~~~~~vD~IlgGHsH~~~~~~---~~~~~~v~q~g~ 246 (277)
T cd07410 196 ERDLEESLTGENAAYELAEEVPGIDAILTGHQHRRFPGP---TVNGVPVVQPGN 246 (277)
T ss_pred CCCcccccCCccHHHHHHhcCCCCcEEEeCCCccccccC---CcCCEEEEcCCh
Confidence 5321 00000011221 579999999999877532 124566777775
No 47
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=99.18 E-value=2.5e-10 Score=96.85 Aligned_cols=77 Identities=29% Similarity=0.283 Sum_probs=49.4
Q ss_pred EEeeccccCcccCCc--Ccc-chhHHHHHHHHHHHHhc--CCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCcee
Q psy11941 25 MIASDIHLGYLETDR--ERG-NDSFVSFEEILEQALDQ--EVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVF 99 (313)
Q Consensus 25 lh~SD~Hlg~~~~~~--~~~-~~~~~~l~~ii~~~~~~--~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 99 (313)
..+||+|+|....-+ .+. .......+++++...+. ++|.|+++||+++.+... .. .+.|++
T Consensus 2 ~~isD~Hlg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~vi~~GDl~~~~~~~--~~---~~~l~~--------- 67 (168)
T cd07390 2 YFTSDTHFGHANILRFCNRPFDDVEEMDEALIRNWNETVGPDDTVYHLGDFSFGGKAG--TE---LELLSR--------- 67 (168)
T ss_pred eEecccccCCHHHHccCCCCCCCHHHHHHHHHHHHhhhcCCCCEEEEeCCCCCCCChH--HH---HHHHHh---------
Confidence 478999999863211 111 11222334556555553 789999999999987542 22 445553
Q ss_pred eeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCC
Q psy11941 100 IDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~ 139 (313)
.+.|+++|+||||...
T Consensus 68 ------------------------~~~~~~~v~GNHD~~~ 83 (168)
T cd07390 68 ------------------------LNGRKHLIKGNHDSSL 83 (168)
T ss_pred ------------------------CCCCeEEEeCCCCchh
Confidence 2458999999999765
No 48
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.18 E-value=3.8e-10 Score=104.15 Aligned_cols=65 Identities=26% Similarity=0.361 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHHHhc--CCCEEEEcCCcCCCCCCCHH-------HHHHHHHHHHHhccCCCceeeeeccCcccccccCC
Q psy11941 44 DSFVSFEEILEQALDQ--EVDMVLLGGDLFHINKPSPT-------TLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDH 114 (313)
Q Consensus 44 ~~~~~l~~ii~~~~~~--~~d~vv~~GDlf~~~~~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 114 (313)
.-...++.+++.+++. ++|+||++||+..+...... ..+.+.+.+++.
T Consensus 50 ~p~~l~~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~----------------------- 106 (296)
T cd00842 50 SPWRLVESALEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKA----------------------- 106 (296)
T ss_pred CcHHHHHHHHHHHHHhCCCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHh-----------------------
Confidence 3467899999999988 99999999999988653211 123344444432
Q ss_pred CccCCCCCCCCCcEEEEcCCCCCCC
Q psy11941 115 VNYMDPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 115 ~~~~~~~~~~~~pv~~I~GNHD~~~ 139 (313)
..++||+.++||||...
T Consensus 107 --------~~~~pv~~~~GNHD~~p 123 (296)
T cd00842 107 --------FPDTPVYPALGNHDSYP 123 (296)
T ss_pred --------CCCCCEEEcCCCCCCCc
Confidence 24689999999999975
No 49
>PRK04036 DNA polymerase II small subunit; Validated
Probab=99.17 E-value=1.9e-09 Score=106.48 Aligned_cols=83 Identities=20% Similarity=0.284 Sum_probs=58.1
Q ss_pred CCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHH---------hcCCCEEEEcCCcCCCCCC--C----------
Q psy11941 19 RNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQAL---------DQEVDMVLLGGDLFHINKP--S---------- 77 (313)
Q Consensus 19 ~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~---------~~~~d~vv~~GDlf~~~~~--~---------- 77 (313)
...++++++||+|+|.... ....++.+++.+. +.+++.||++||+++...+ .
T Consensus 241 ~~~~~i~~ISDlHlgs~~~-------~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~ 313 (504)
T PRK04036 241 DEKVYAVFISDVHVGSKEF-------LEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDI 313 (504)
T ss_pred CCccEEEEEcccCCCCcch-------hHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhh
Confidence 3468999999999997532 1223555666555 6789999999999986321 1
Q ss_pred HHHHHHHHHHHHHhccCCCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCC
Q psy11941 78 PTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 78 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~ 139 (313)
.+.+..+.++|+++ ...+||+++|||||...
T Consensus 314 ~~~~~~l~~~L~~L-------------------------------~~~i~V~~ipGNHD~~~ 344 (504)
T PRK04036 314 YEQYEAAAEYLKQI-------------------------------PEDIKIIISPGNHDAVR 344 (504)
T ss_pred HHHHHHHHHHHHhh-------------------------------hcCCeEEEecCCCcchh
Confidence 12245566677654 24689999999999864
No 50
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.15 E-value=1.5e-10 Score=101.46 Aligned_cols=79 Identities=25% Similarity=0.389 Sum_probs=55.3
Q ss_pred EEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCC---CCCHHHHHHHHHHHHHhccCCCceeee
Q psy11941 25 MIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHIN---KPSPTTLKKCLETLRKYCIGDRSVFID 101 (313)
Q Consensus 25 lh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~---~~~~~~~~~~~~~l~~l~~~~~~~~~~ 101 (313)
+.|||+|||...+ +..+.|-..++.- +.++|.+++.||+|+.- ...++..+.+.+.|.+++
T Consensus 1 lFISDlHL~~~~p------~~t~~fl~Fl~~~-a~~ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~a--------- 64 (237)
T COG2908 1 LFISDLHLGPKRP------ALTAFFLDFLREE-AAQADALYILGDIFDGWIGDDEPPQLHRQVAQKLLRLA--------- 64 (237)
T ss_pred CeeeccccCCCCc------HHHHHHHHHHHhc-cccCcEEEEechhhhhhhcCCcccHHHHHHHHHHHHHH---------
Confidence 4799999996543 3334444444332 22669999999999872 234466777777777665
Q ss_pred eccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCC
Q psy11941 102 VISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSG 140 (313)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~ 140 (313)
..+.+||+++||||...+
T Consensus 65 ---------------------~~G~~v~~i~GN~Dfll~ 82 (237)
T COG2908 65 ---------------------RKGTRVYYIHGNHDFLLG 82 (237)
T ss_pred ---------------------hcCCeEEEecCchHHHHH
Confidence 568999999999997653
No 51
>PLN02533 probable purple acid phosphatase
Probab=99.15 E-value=7.8e-10 Score=107.10 Aligned_cols=183 Identities=14% Similarity=0.119 Sum_probs=97.0
Q ss_pred CCCCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCC
Q psy11941 17 DDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDR 96 (313)
Q Consensus 17 ~~~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~ 96 (313)
+.....||++++|+|.+.. ...+++.+.+.++|+||++||+...... ......+.+.+..+
T Consensus 135 p~~~~~~f~v~GDlG~~~~-------------~~~tl~~i~~~~pD~vl~~GDl~y~~~~-~~~wd~f~~~i~~l----- 195 (427)
T PLN02533 135 PSKFPIKFAVSGDLGTSEW-------------TKSTLEHVSKWDYDVFILPGDLSYANFY-QPLWDTFGRLVQPL----- 195 (427)
T ss_pred CCCCCeEEEEEEeCCCCcc-------------cHHHHHHHHhcCCCEEEEcCccccccch-HHHHHHHHHHhhhH-----
Confidence 4446899999999874321 1235555667899999999999876432 12234444555443
Q ss_pred ceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCC----CcCchH-HHHhhCCCeeEecccccCCceeee
Q psy11941 97 SVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGP----ELVAAL-DIVSNSGLVNYFGKCTNLNEITLN 171 (313)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~----~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~ 171 (313)
...+|+++++||||..... .....+ ..+.-+. ........ .
T Consensus 196 --------------------------~s~~P~m~~~GNHE~~~~~~~~~~~f~~y~~rf~mP~-----~~~g~~~~---~ 241 (427)
T PLN02533 196 --------------------------ASQRPWMVTHGNHELEKIPILHPEKFTAYNARWRMPF-----EESGSTSN---L 241 (427)
T ss_pred --------------------------hhcCceEEeCccccccccccccCcCccchhhcccCCc-----cccCCCCC---c
Confidence 2458999999999986421 011100 0000000 00000000 0
Q ss_pred cEEEeeCCeEEEEEec--CC-CchHHHHHHhhhcchhccCCCCCCCcceEEEeeccccCCCCc---C--------ccccc
Q psy11941 172 PLIIQKNETKVAIFGL--GY-VKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTV---K--------NIAED 237 (313)
Q Consensus 172 ~~~l~~~~~~~~i~gl--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~~---~--------~~~~~ 237 (313)
...++.|+..+.++.. ++ ....|..|+.++++.. . .......|++.|+|+...+.. . .+...
T Consensus 242 yYSfd~g~vhfI~Lds~~~~~~~~~Q~~WLe~dL~~~--~--r~~~pwiIv~~H~P~y~s~~~~~~~~~~~~~r~~le~L 317 (427)
T PLN02533 242 YYSFNVYGVHIIMLGSYTDFEPGSEQYQWLENNLKKI--D--RKTTPWVVAVVHAPWYNSNEAHQGEKESVGMKESMETL 317 (427)
T ss_pred eEEEEECCEEEEEEeCCccccCchHHHHHHHHHHHhh--c--ccCCCEEEEEeCCCeeecccccCCcchhHHHHHHHHHH
Confidence 1334444433222221 11 2357888887664321 1 112235788899987533211 0 01111
Q ss_pred cCCCcccEEEeCCccCccc
Q psy11941 238 SIPSFFHFILWGHEHECRI 256 (313)
Q Consensus 238 ~~~~~~d~v~~GH~H~~~~ 256 (313)
+.+.++|++++||.|.+..
T Consensus 318 l~~~~VdlvlsGH~H~YeR 336 (427)
T PLN02533 318 LYKARVDLVFAGHVHAYER 336 (427)
T ss_pred HHHhCCcEEEecceecccc
Confidence 2246899999999998764
No 52
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=99.14 E-value=8.3e-10 Score=99.99 Aligned_cols=210 Identities=15% Similarity=0.177 Sum_probs=109.0
Q ss_pred EEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHH-HHHHHHHHHHHhccCCCceee
Q psy11941 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPT-TLKKCLETLRKYCIGDRSVFI 100 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~-~~~~~~~~l~~l~~~~~~~~~ 100 (313)
++|+|+||+|....... ...-.+..+..++++.++...++++.+||+|+....+.. .-+...+.|+
T Consensus 1 i~il~~~D~H~~~~~~~--~~~~g~~~l~~~i~~~~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln----------- 67 (257)
T cd07408 1 ITILHTNDIHGRIDEDD--NNGIGYAKLATYKKEMNKLDNDLLVDAGDAIQGLPISDLDKGETIIKIMN----------- 67 (257)
T ss_pred CEEEEeccCcccccCCC--CccccHHHHHHHHHHHHhcCCEEEEeCCCcCCCchhhhhcCCcHHHHHHH-----------
Confidence 58999999996553321 112345667888888877666788889999987543111 1123444554
Q ss_pred eeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEecccccC--Cceeeec-EEEee
Q psy11941 101 DVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNL--NEITLNP-LIIQK 177 (313)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~-~~l~~ 177 (313)
..+..+. +.||||+..+... ....+...++-.+....... ..-.+.| .+++.
T Consensus 68 ----------------------~~g~d~~-~~GNHefd~G~~~--l~~~~~~~~~~~l~aNv~~~~~~~~~~~py~i~~~ 122 (257)
T cd07408 68 ----------------------AVGYDAV-TPGNHEFDYGLDR--LKELSKEADFPFLSANVYDNDTGKRVFKPYKIKEL 122 (257)
T ss_pred ----------------------hcCCcEE-ccccccccCCHHH--HHHHHhhCCCCEEEEEEEEcCCCCcccCCEEEEEc
Confidence 3455665 4699998764322 22333333322111111000 0011233 34456
Q ss_pred C-CeEEEEEecCCCc------hHH---H-----HHHhhhcchhccCCCCCCCcceEEEeeccccCCCCcCccccccC--C
Q psy11941 178 N-ETKVAIFGLGYVK------DER---L-----CNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTVKNIAEDSI--P 240 (313)
Q Consensus 178 ~-~~~~~i~gl~~~~------~~~---~-----~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~~~~~~~~~~--~ 240 (313)
+ +.++.++|+-... +.. + ...+.+..+..++. ...+ +.|+++|.+...... .+....+. -
T Consensus 123 ~~G~kIgviG~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~-~~~D-~iIvl~H~G~~~~~~-~~~~~~la~~~ 199 (257)
T cd07408 123 GNGVKVGVIGLTTPETATKTHPKNVKDVTFEDPIEEAKKVIVAALKA-KGAD-VIVALGHLGVDRTSS-PWTSTELAANV 199 (257)
T ss_pred CCCCEEEEEeecCcCcccccCccccCCcEEecHHHHHHHHHHHHHHh-CCCC-EEEEEeCcCcCCCCC-CccHHHHHHhC
Confidence 6 8899999853210 000 0 00011100111111 2345 999999998654311 11111111 2
Q ss_pred CcccEEEeCCccCccccCCCCCCCcccEEecCC
Q psy11941 241 SFFHFILWGHEHECRIKPEYNTKQRFHVCQPGS 273 (313)
Q Consensus 241 ~~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS 273 (313)
.++|+|+.||.|.....+. ...++..++.+|+
T Consensus 200 ~giDvIigGH~H~~~~~~~-~~~~~~~ivq~g~ 231 (257)
T cd07408 200 TGIDLIIDGHSHTTIEIGK-KDGNNVLLTQTGA 231 (257)
T ss_pred CCceEEEeCCCcccccCcc-cccCCeEEEcCCh
Confidence 5799999999999875421 0124556666664
No 53
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=99.14 E-value=1.4e-10 Score=98.70 Aligned_cols=84 Identities=21% Similarity=0.218 Sum_probs=57.3
Q ss_pred EEeeccccCcccC----C-cCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCcee
Q psy11941 25 MIASDIHLGYLET----D-RERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVF 99 (313)
Q Consensus 25 lh~SD~Hlg~~~~----~-~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 99 (313)
|++||+|+|.... + .....+..+.++++.+.+.+.++|.|+++||+||...............+. +.
T Consensus 1 l~isDlHlG~~~~~~~~g~~~p~~~~~~~~~~l~~~~~~~~~d~lii~GDl~~~~~~~~~~~~~~~~~~~-~~------- 72 (172)
T cd07391 1 LVVADLHLGKEEELRRRGILLPRGQTEDTLERLDRLIEEYGPERLIILGDLKHSFGGLSRQEFEEVAFLR-LL------- 72 (172)
T ss_pred CEeEeeccchHHHHHhcCCcCCcccHHHHHHHHHHHHHhcCCCEEEEeCcccccccccCHHHHHHHHHHH-hc-------
Confidence 5899999998532 1 122333446788899999999999999999999876543222222222222 11
Q ss_pred eeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCC
Q psy11941 100 IDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~ 139 (313)
..++++++|+||||...
T Consensus 73 -----------------------~~~~~v~~i~GNHD~~~ 89 (172)
T cd07391 73 -----------------------AKDVDVILIRGNHDGGL 89 (172)
T ss_pred -----------------------cCCCeEEEEcccCccch
Confidence 35689999999999865
No 54
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=99.13 E-value=2.6e-09 Score=97.10 Aligned_cols=205 Identities=19% Similarity=0.263 Sum_probs=109.8
Q ss_pred EEEEEeeccccCcccCCc----------CccchhHHHHHHHHHHHHhc-CCCEEEE-cCCcCCCCCCCHHHH---HHHHH
Q psy11941 22 IRIMIASDIHLGYLETDR----------ERGNDSFVSFEEILEQALDQ-EVDMVLL-GGDLFHINKPSPTTL---KKCLE 86 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~----------~~~~~~~~~l~~ii~~~~~~-~~d~vv~-~GDlf~~~~~~~~~~---~~~~~ 86 (313)
++|+|++|+|-....... ....-.+..+..+++++++. ++|.+++ +||+|+.... ..+ ....+
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~~~~~~~gG~~r~~~~v~~~~~~~~~~~l~l~~GD~~~gs~~--~~~~~g~~~~~ 78 (264)
T cd07411 1 LTLLHINDLHGQLIPHYELEPSNLLARVFGMAGGFAHIATLIKRIRAERNPNTLLLDGGDTWQGSGE--ALYTRGQAMVD 78 (264)
T ss_pred CEEEEEcccccCccccccccccccccccccccCcHHHHHHHHHHHHHhcCCCeEEEeCCCccCCChH--HhhcCChhHHH
Confidence 479999999977543211 01223577889999999988 9998854 9999987543 222 23444
Q ss_pred HHHHhccCCCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEecccc--c
Q psy11941 87 TLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCT--N 164 (313)
Q Consensus 87 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~~--~ 164 (313)
.|+ . +++.++.||||+..+... ....++..++-.+..... .
T Consensus 79 ~l~---------------------------------~--~g~da~~GNHefd~g~~~--l~~~~~~~~~~~l~aN~~~~~ 121 (264)
T cd07411 79 ALN---------------------------------A--LGVDAMVGHWEFTYGPER--VRELFGRLNWPFLAANVYDDE 121 (264)
T ss_pred HHH---------------------------------h--hCCeEEecccccccCHHH--HHHHHhhCCCCEEEEEEEeCC
Confidence 444 2 333333399998764322 223444444221111100 0
Q ss_pred CCceeeecE-EEeeCCeEEEEEecCCCchHHH--------------HHHhhhcchhccCCCCCCCcceEEEeeccccCCC
Q psy11941 165 LNEITLNPL-IIQKNETKVAIFGLGYVKDERL--------------CNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERG 229 (313)
Q Consensus 165 ~~~~~~~~~-~l~~~~~~~~i~gl~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~ 229 (313)
-....+.|+ +.+.++.++.|+|+........ ...+.+. +..+......+ +.|+++|.+....
T Consensus 122 ~~~~~~~~~~i~~~~g~kVgviG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D-~iI~l~H~g~~~~- 198 (264)
T cd07411 122 AGERVFPPYRIKEVGGVKIGVIGQTFPYVPIANPPRFTPGLTFGIREEELQEV-VVKLRREEGVD-VVVLLSHNGLPVD- 198 (264)
T ss_pred CCCcccCCEEEEEECCEEEEEEEeccCCcccccCcCCCCCcEECCHHHHHHHH-HHHHHHhCCCC-EEEEEecCCchhh-
Confidence 000112333 4567889999999753211000 0000000 01111112334 9999999975321
Q ss_pred CcCccccccCCCcccEEEeCCccCccccCCCCCCCcccEEecCC
Q psy11941 230 TVKNIAEDSIPSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGS 273 (313)
Q Consensus 230 ~~~~~~~~~~~~~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS 273 (313)
..+... + .++|+|+.||.|.....+. ...++..++++|+
T Consensus 199 --~~la~~-~-~~iDlilgGH~H~~~~~~~-~~~~~t~v~~~g~ 237 (264)
T cd07411 199 --VELAER-V-PGIDVILSGHTHERTPKPI-IAGGGTLVVEAGS 237 (264)
T ss_pred --HHHHhc-C-CCCcEEEeCcccccccCcc-cccCCEEEEEcCc
Confidence 111111 2 5799999999997654331 1125567777776
No 55
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=99.10 E-value=5.3e-10 Score=88.68 Aligned_cols=69 Identities=29% Similarity=0.374 Sum_probs=46.8
Q ss_pred EEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeeeecc
Q psy11941 25 MIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDVIS 104 (313)
Q Consensus 25 lh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 104 (313)
+++||+|.+...... . .......+.++|+|+++||+++...............+.
T Consensus 1 ~~~gD~h~~~~~~~~---------~-~~~~~~~~~~~~~vi~~GD~~~~~~~~~~~~~~~~~~~~--------------- 55 (131)
T cd00838 1 AVISDIHGNLEALEA---------V-LEAALAAAEKPDFVLVLGDLVGDGPDPEEVLAAALALLL--------------- 55 (131)
T ss_pred CeeecccCCccchHH---------H-HHHHHhcccCCCEEEECCcccCCCCCchHHHHHHHHHhh---------------
Confidence 579999988754311 0 014556678999999999999998764333222111111
Q ss_pred CcccccccCCCccCCCCCCCCCcEEEEcCCCC
Q psy11941 105 DPKLVMCNDHVNYMDPNLNISLPVFTINGNHD 136 (313)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD 136 (313)
....|+++++||||
T Consensus 56 ------------------~~~~~~~~~~GNHD 69 (131)
T cd00838 56 ------------------LLGIPVYVVPGNHD 69 (131)
T ss_pred ------------------cCCCCEEEeCCCce
Confidence 45789999999999
No 56
>KOG2679|consensus
Probab=99.10 E-value=2.7e-09 Score=94.58 Aligned_cols=248 Identities=13% Similarity=0.117 Sum_probs=122.8
Q ss_pred CCCCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCC
Q psy11941 17 DDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDR 96 (313)
Q Consensus 17 ~~~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~ 96 (313)
.....++|+.++||=.... -.+-.....+-+.+.+.++|+||-+||-|-...+....-.++-+.+..
T Consensus 39 ~~dgslsflvvGDwGr~g~-------~nqs~va~qmg~ige~l~idfvlS~GDNfYd~G~~~~~Dp~Fq~sF~n------ 105 (336)
T KOG2679|consen 39 KSDGSLSFLVVGDWGRRGS-------FNQSQVALQMGEIGEKLDIDFVLSTGDNFYDTGLTSENDPRFQDSFEN------ 105 (336)
T ss_pred CCCCceEEEEEcccccCCc-------hhHHHHHHHHHhHHHhccceEEEecCCcccccCCCCCCChhHHhhhhh------
Confidence 3456899999999962221 122234456777788999999999999875543322222333334442
Q ss_pred ceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEecccc-------cCCcee
Q psy11941 97 SVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCT-------NLNEIT 169 (313)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~~~ 169 (313)
.|++|++ +.|+|.|.||||+.+.-... .-.++...+..=++-+.- ++-..+
T Consensus 106 -------------------IYT~pSL--QkpWy~vlGNHDyrGnV~AQ-ls~~l~~~d~RW~c~rsf~~~ae~ve~f~v~ 163 (336)
T KOG2679|consen 106 -------------------IYTAPSL--QKPWYSVLGNHDYRGNVEAQ-LSPVLRKIDKRWICPRSFYVDAEIVEMFFVD 163 (336)
T ss_pred -------------------cccCccc--ccchhhhccCccccCchhhh-hhHHHHhhccceecccHHhhcceeeeeeccc
Confidence 3667754 56999999999999842221 111222222110000000 000000
Q ss_pred eecEEEeeC-CeEEEEEecCCCch--HHHHHHhhhcchhccCCCCCCCcceEEEeeccccC---CCCcCcc----ccccC
Q psy11941 170 LNPLIIQKN-ETKVAIFGLGYVKD--ERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPE---RGTVKNI----AEDSI 239 (313)
Q Consensus 170 ~~~~~l~~~-~~~~~i~gl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~---~~~~~~~----~~~~~ 239 (313)
..|+++..= ...=.++-..-..+ ..++..+..+... ++ ...++++|++.|+++-. +|+..-+ .+.+.
T Consensus 164 ~~~f~~d~~~~~~~~~ydw~~v~PR~~~~~~~l~~le~~-L~--~S~a~wkiVvGHh~i~S~~~HG~T~eL~~~LlPiL~ 240 (336)
T KOG2679|consen 164 TTPFMDDTFTLCTDDVYDWRGVLPRVKYLRALLSWLEVA-LK--ASRAKWKIVVGHHPIKSAGHHGPTKELEKQLLPILE 240 (336)
T ss_pred cccchhhheecccccccccccCChHHHHHHHHHHHHHHH-HH--HhhcceEEEecccceehhhccCChHHHHHHHHHHHH
Confidence 011110000 00000111100111 1111111111111 11 13356999999999753 3442222 22333
Q ss_pred CCcccEEEeCCccCccccCCCCCCCcccEEecCCC---------------ceeccccCccccccEEEEEEeCCceeEEEE
Q psy11941 240 PSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSP---------------VATSLCAGEAVQKKCGILMCNKQNYKLVPR 304 (313)
Q Consensus 240 ~~~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS~---------------~~~~~~e~~~~~~g~~vv~~~~~~~~~~~i 304 (313)
..++|+.++||-|.-|-+... ......+-+|.- .-+.|.= +.+||..+++...+.++.+.
T Consensus 241 ~n~VdlY~nGHDHcLQhis~~--e~~iqf~tSGagSkaw~g~~~~~~~~p~~lkF~Y---dgqGfmsv~is~~e~~vvfy 315 (336)
T KOG2679|consen 241 ANGVDLYINGHDHCLQHISSP--ESGIQFVTSGAGSKAWRGTDHNPEVNPKELKFYY---DGQGFMSVEISHSEARVVFY 315 (336)
T ss_pred hcCCcEEEecchhhhhhccCC--CCCeeEEeeCCcccccCCCccCCccChhheEEee---CCCceEEEEEecceeEEEEE
Confidence 478999999999987766431 122222223321 1111211 23589999999888888776
Q ss_pred eCC
Q psy11941 305 SLE 307 (313)
Q Consensus 305 ~l~ 307 (313)
...
T Consensus 316 D~~ 318 (336)
T KOG2679|consen 316 DVS 318 (336)
T ss_pred ecc
Confidence 653
No 57
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=99.09 E-value=3.8e-09 Score=97.12 Aligned_cols=192 Identities=17% Similarity=0.256 Sum_probs=99.6
Q ss_pred EEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhc----CCCE-EEEcCCcCCCCCCCHHH-HHHHHHHHHHhccCC
Q psy11941 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQ----EVDM-VLLGGDLFHINKPSPTT-LKKCLETLRKYCIGD 95 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~----~~d~-vv~~GDlf~~~~~~~~~-~~~~~~~l~~l~~~~ 95 (313)
++|+|++|+|-....... ..-.+..+..+++.++++ +.+. ++-+||+|.....+... -....+.|+
T Consensus 1 ltIl~tnD~Hg~l~~~~~--~~gG~ar~a~~i~~~r~~~~~~~~~~l~ld~GD~~~Gs~~~~~~~g~~~~~~~n------ 72 (285)
T cd07405 1 ITILHTNDHHGHFWPNGT--GEYGLAAQKTLVDGVRREVAAQGGYVLLLSGGDINTGVPESDLQDAEPDFRGMN------ 72 (285)
T ss_pred CEEEEEcccccccccCCC--CCccHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCchhHHhcCcchHHHHHH------
Confidence 479999999977644321 223566677778777754 5554 55599999654321100 122233444
Q ss_pred CceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhC--CCe--eEecccccCCceeee
Q psy11941 96 RSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNS--GLV--NYFGKCTNLNEITLN 171 (313)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~--~~~--~~~~~~~~~~~~~~~ 171 (313)
..++.+..+ ||||+..+...+. ..+... +++ ++... .-+.+ +.
T Consensus 73 ---------------------------~~g~Da~~~-GNHEfD~G~~~L~--~~~~~~~fp~l~aNv~~~--~g~~~-~~ 119 (285)
T cd07405 73 ---------------------------LVGYDAMAV-GNHEFDNPLEVLR--QQMKWANFPLLSANIYQE--SGERL-FK 119 (285)
T ss_pred ---------------------------hhCCcEEee-cccccccCHHHHH--HHHhhCCCCEEEEEEEec--CCCCc-cC
Confidence 346677666 9999987643221 222222 221 12111 00111 23
Q ss_pred c-EEEeeCCeEEEEEecCCCchHHH-----------HHHhhh--cchhccCCCCCCCcceEEEeeccccCCC---C---c
Q psy11941 172 P-LIIQKNETKVAIFGLGYVKDERL-----------CNMIKH--NKVKYMKPTDDKDIIYILVLHQNRPERG---T---V 231 (313)
Q Consensus 172 ~-~~l~~~~~~~~i~gl~~~~~~~~-----------~~~~~~--~~~~~~~~~~~~~~~~Ilv~H~~~~~~~---~---~ 231 (313)
| .+++.++.++.|+|+-....... ...... ..++.++. ...+ +.|+++|....... . .
T Consensus 120 p~~i~~~~G~kIgviG~t~~~~~~~~~~~~~~~~~f~d~~~~~~~~v~~lk~-~~~D-~VI~lsH~G~~~~~~~~~~~~~ 197 (285)
T cd07405 120 PYALFDLGGLKIAVIGLTTDDTAKIGNPAYFEGIEFRPPIHEAKEVVPELKQ-EKPD-IVIAATHMGHYDNGEHGSNAPG 197 (285)
T ss_pred CeEEEEECCEEEEEEEecccccccccCcCCcCCcEEcCHHHHHHHHHHHHHH-cCCC-EEEEEecccccCCccccccCch
Confidence 3 45567888999988743211100 000000 00111222 1334 89999999864321 0 0
Q ss_pred C-ccccccCCCcccEEEeCCccCccc
Q psy11941 232 K-NIAEDSIPSFFHFILWGHEHECRI 256 (313)
Q Consensus 232 ~-~~~~~~~~~~~d~v~~GH~H~~~~ 256 (313)
+ .+...+...++|+|+.||.|....
T Consensus 198 ~~~lA~~~~~~giD~IigGHsH~~~~ 223 (285)
T cd07405 198 DVEMARALPAGGLDLIVGGHSQDPVC 223 (285)
T ss_pred HHHHHHhcCCCCCCEEEeCCCCcccc
Confidence 0 111122236799999999999774
No 58
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=99.09 E-value=2.3e-10 Score=101.56 Aligned_cols=84 Identities=23% Similarity=0.211 Sum_probs=63.6
Q ss_pred EEEEEeeccccCcccCCc-----CccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCC
Q psy11941 22 IRIMIASDIHLGYLETDR-----ERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDR 96 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~-----~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~ 96 (313)
-+.+++||+|+|....-+ ....+..++++++.+.+.+.++|.||++||++|..... .+.+.+.++++.+
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~~~-~~~~~~~~~l~~~----- 88 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKHEFKKG-LEWRFIREFIEVT----- 88 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCccccccCCh-HHHHHHHHHHHhc-----
Confidence 467999999999743211 11234556788888888899999999999999986553 5677777777742
Q ss_pred ceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCC
Q psy11941 97 SVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~ 139 (313)
..++++|+||||...
T Consensus 89 ----------------------------~~~v~~V~GNHD~~~ 103 (225)
T TIGR00024 89 ----------------------------FRDLILIRGNHDALI 103 (225)
T ss_pred ----------------------------CCcEEEECCCCCCcc
Confidence 358999999999654
No 59
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=99.09 E-value=6.6e-09 Score=95.69 Aligned_cols=210 Identities=18% Similarity=0.243 Sum_probs=108.7
Q ss_pred EEEEEeeccccCcccCCc--CccchhHHHHHHHHHHHHhcCCC-EEEEcCCcCCCCCCCHHHH---HHHHHHHHHhccCC
Q psy11941 22 IRIMIASDIHLGYLETDR--ERGNDSFVSFEEILEQALDQEVD-MVLLGGDLFHINKPSPTTL---KKCLETLRKYCIGD 95 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~--~~~~~~~~~l~~ii~~~~~~~~d-~vv~~GDlf~~~~~~~~~~---~~~~~~l~~l~~~~ 95 (313)
++|+|+||+|-....... ......+..+..+++..+++.++ +++.+||+|..... .+.+ +...+.++
T Consensus 1 i~il~tnD~Hg~~~~~~~~~~~~~gG~arl~~~i~~~r~~~~~~l~ld~GD~~~gs~~-~s~~~~g~~~~~~~n------ 73 (288)
T cd07412 1 VQILAINDFHGRLEPPGKVVTVPAGGAAYLAAYLDEARAQNPNSLFVSAGDLIGASPF-ESALLQDEPTIEALN------ 73 (288)
T ss_pred CeEEEEeccccCccCCCCccccccccHHHHHHHHHHHHhcCCCeEEEeCCcccccccc-hhhcccCCcHHHHHH------
Confidence 589999999944332211 11223567788999999887776 66669999965432 1111 23344554
Q ss_pred CceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhh------------------CCCe-
Q psy11941 96 RSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSN------------------SGLV- 156 (313)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~------------------~~~~- 156 (313)
..++.+ ++.||||+..+... ..+.++. ..++
T Consensus 74 ---------------------------~~g~Da-~t~GNHefd~G~~~--l~~~~~~~~~~~~~~~~~~~~~~a~fp~l~ 123 (288)
T cd07412 74 ---------------------------AMGVDA-SAVGNHEFDEGYAE--LLRRINGGCHPTTGCQAGYPFPGANFPYLA 123 (288)
T ss_pred ---------------------------hhCCee-eeecccccccCHHH--HHHHHhccCCccccccccccCcCCCCCEEE
Confidence 345565 45599999765322 1222221 1111
Q ss_pred -eEecccccCCceeeec-EEEeeCCeEEEEEecCC--Cc----hH-----HHHHHhhh--cchhccCCCCCCCcceEEEe
Q psy11941 157 -NYFGKCTNLNEITLNP-LIIQKNETKVAIFGLGY--VK----DE-----RLCNMIKH--NKVKYMKPTDDKDIIYILVL 221 (313)
Q Consensus 157 -~~~~~~~~~~~~~~~~-~~l~~~~~~~~i~gl~~--~~----~~-----~~~~~~~~--~~~~~~~~~~~~~~~~Ilv~ 221 (313)
++....+. ... +.| .+++.++.++.|+|+-. .. +. ......+. ..++.++. ...+ +.|+++
T Consensus 124 aNv~~~~~~-~~~-~~py~i~~~~G~kIgviGl~~~~~~~~~~~~~~~g~~f~d~~e~~~~~v~~lr~-~~~D-~IIvL~ 199 (288)
T cd07412 124 ANVYDKGTG-TPA-LPPYTIKDVGGVKVGFIGAVTKDTPNLVSPDGVAGLEFTDEVEAINAVAPELKA-GGVD-AIVVLA 199 (288)
T ss_pred EeEEecCCC-Ccc-cCCEEEEEECCEEEEEEeecCCCccceeccccccCceEcCHHHHHHHHHHHHHH-CCCC-EEEEEe
Confidence 11111100 111 223 44567889999999721 10 00 00000000 00111221 2345 999999
Q ss_pred eccccCCCCcC---c---cccc---cCCCcccEEEeCCccCccccCCCCCCCcccEEecCC
Q psy11941 222 HQNRPERGTVK---N---IAED---SIPSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGS 273 (313)
Q Consensus 222 H~~~~~~~~~~---~---~~~~---~~~~~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS 273 (313)
|.......... . ...+ .+..++|+|+.||.|.....+. ...++..++.+|+
T Consensus 200 H~G~~~~~~~~~~~~~~~~~~~l~~~~~~~iD~IlgGHsH~~~~~~~-~~~~~~~v~q~g~ 259 (288)
T cd07412 200 HEGGSTKGGDDTCSAASGPIADIVNRLDPDVDVVFAGHTHQAYNCTV-PAGNPRLVTQAGS 259 (288)
T ss_pred CCCCCCCCCCccccccChhHHHHHhhcCCCCCEEEeCccCccccccc-cCcCCEEEEecCh
Confidence 99865321100 0 0011 1235799999999999875321 1235567777776
No 60
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.07 E-value=4.6e-09 Score=95.12 Aligned_cols=60 Identities=18% Similarity=0.165 Sum_probs=37.7
Q ss_pred HHHHHHHH-hcCCCEEEEcCCcCCCCCCC-HH----HHHHHHHHHHHhccCCCceeeeeccCcccccccCCCccCCCCCC
Q psy11941 50 EEILEQAL-DQEVDMVLLGGDLFHINKPS-PT----TLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLN 123 (313)
Q Consensus 50 ~~ii~~~~-~~~~d~vv~~GDlf~~~~~~-~~----~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (313)
++....+. ..+||+||++||||+.+... .+ .+.++.+.|..+ .
T Consensus 34 r~~~~~~~~~l~PD~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i~~~~-------------------------------~ 82 (257)
T cd08163 34 RRNWRYMQKQLKPDSTIFLGDLFDGGRDWADEYWKKEYNRFMRIFDPS-------------------------------P 82 (257)
T ss_pred HHHHHHHHHhcCCCEEEEecccccCCeeCcHHHHHHHHHHHHHHhcCC-------------------------------C
Confidence 33444333 46899999999999987642 12 233333333211 1
Q ss_pred CCCcEEEEcCCCCCCCC
Q psy11941 124 ISLPVFTINGNHDDPSG 140 (313)
Q Consensus 124 ~~~pv~~I~GNHD~~~~ 140 (313)
...|++.||||||....
T Consensus 83 ~~~pv~~VpGNHDig~~ 99 (257)
T cd08163 83 GRKMVESLPGNHDIGFG 99 (257)
T ss_pred ccceEEEeCCCcccCCC
Confidence 24799999999998653
No 61
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=98.99 E-value=3e-08 Score=90.99 Aligned_cols=190 Identities=20% Similarity=0.260 Sum_probs=103.5
Q ss_pred EEEEEeeccccCcccCCc---------CccchhHHHHHHHHHHHHhcCCCEEEE-cCCcCCCCCCCHHH-HHHHHHHHHH
Q psy11941 22 IRIMIASDIHLGYLETDR---------ERGNDSFVSFEEILEQALDQEVDMVLL-GGDLFHINKPSPTT-LKKCLETLRK 90 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~---------~~~~~~~~~l~~ii~~~~~~~~d~vv~-~GDlf~~~~~~~~~-~~~~~~~l~~ 90 (313)
++|+|++|+|-....... ......+..+..+++..++.+++.+++ +||+|+....+... -+...+.|+
T Consensus 1 l~il~tnD~Hg~l~~~~~~~~~~~~~~~~~~gG~ar~~~~v~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln- 79 (281)
T cd07409 1 LTILHTNDHHSRFEETNPSGGVKDAATEKCYGGFARVATLVKELRAENPNVLFLNAGDAFQGTLWYTLYKGNADAEFMN- 79 (281)
T ss_pred CEEEEeccccccccccCccccccccccccccCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCcchhhhcCChHHHHHHH-
Confidence 479999999976533221 112235678889999998888886666 99999875432110 133344444
Q ss_pred hccCCCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCe----eEecccc--c
Q psy11941 91 YCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLV----NYFGKCT--N 164 (313)
Q Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~----~~~~~~~--~ 164 (313)
..+..+..+ ||||+..+...+ ...+....+- ++..... .
T Consensus 80 --------------------------------~~g~D~~~l-GNHefd~G~~~l--~~~~~~~~~p~l~aNv~~~~~~~~ 124 (281)
T cd07409 80 --------------------------------LLGYDAMTL-GNHEFDDGVEGL--APFLNNLKFPVLSANIDTSNEPPL 124 (281)
T ss_pred --------------------------------hcCCCEEEe-ccccccCCHHHH--HHHHHhCCCCEEEEeeecCCCccc
Confidence 345666655 999998754321 2333333321 1111100 0
Q ss_pred CCceeeec-EEEeeCCeEEEEEecCCCchHHHH------------HHhhhcchhccCCCCCCCcceEEEeeccccCCCCc
Q psy11941 165 LNEITLNP-LIIQKNETKVAIFGLGYVKDERLC------------NMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTV 231 (313)
Q Consensus 165 ~~~~~~~~-~~l~~~~~~~~i~gl~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~~ 231 (313)
... .+.| .+++.++.++.|+|+-........ ..+. ..++.++. ...+ +.|+++|.+....
T Consensus 125 ~~~-~~~p~~i~~~~G~kIgviG~~~~~~~~~~~~~~~~~~~d~~~~~~-~~v~~lr~-~~~D-~II~l~H~G~~~d--- 197 (281)
T cd07409 125 LDG-LLKPSTILTVGGEKIGIIGYTTPDTTELSSPGGKVKFLDEIEAAQ-KEADKLKA-QGVN-KIIALSHSGYEVD--- 197 (281)
T ss_pred ccc-ccCCeEEEEECCEEEEEEEEecCcccccccCCCceEECCHHHHHH-HHHHHHHh-cCCC-EEEEEeccCchhH---
Confidence 011 1233 456778899999986321110000 0000 01111222 1234 8999999975421
Q ss_pred CccccccCCCcccEEEeCCccCccc
Q psy11941 232 KNIAEDSIPSFFHFILWGHEHECRI 256 (313)
Q Consensus 232 ~~~~~~~~~~~~d~v~~GH~H~~~~ 256 (313)
..+... + .++|+|+.||.|....
T Consensus 198 ~~la~~-~-~giD~IiggH~H~~~~ 220 (281)
T cd07409 198 KEIARK-V-PGVDVIVGGHSHTFLY 220 (281)
T ss_pred HHHHHc-C-CCCcEEEeCCcCcccc
Confidence 111122 2 5799999999999763
No 62
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.96 E-value=2e-09 Score=87.33 Aligned_cols=33 Identities=30% Similarity=0.303 Sum_probs=22.5
Q ss_pred EEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcC
Q psy11941 25 MIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLF 71 (313)
Q Consensus 25 lh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf 71 (313)
+.+||+| +... .+.++... +.++|.++++||+.
T Consensus 1 ~viSDtH-~~~~-----------~~~~~~~~--~~~~d~ii~~GD~~ 33 (129)
T cd07403 1 LVISDTE-SPAL-----------YSPEIKVR--LEGVDLILSAGDLP 33 (129)
T ss_pred Ceecccc-Cccc-----------cchHHHhh--CCCCCEEEECCCCC
Confidence 4789999 4311 23444432 68899999999973
No 63
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.92 E-value=1.1e-07 Score=97.76 Aligned_cols=58 Identities=19% Similarity=0.346 Sum_probs=41.0
Q ss_pred CCCeEEEEEeeccccCcccCC----cCccchhHHHHHHHHHHHHhcCCCE-EEEcCCcCCCCC
Q psy11941 18 DRNTIRIMIASDIHLGYLETD----RERGNDSFVSFEEILEQALDQEVDM-VLLGGDLFHINK 75 (313)
Q Consensus 18 ~~~~mkilh~SD~Hlg~~~~~----~~~~~~~~~~l~~ii~~~~~~~~d~-vv~~GDlf~~~~ 75 (313)
....++|||++|+|......+ .....-.+..+..++++++++.... +|-+||++....
T Consensus 36 ~~~~L~IL~TnDiHg~l~~~dy~~~~~~~~~Glar~AtlI~~~R~e~~ntlllD~GD~iqGsp 98 (780)
T PRK09418 36 STVNLRILETSDIHVNLMNYDYYQTKTDNKVGLVQTATLVNKAREEAKNSVLFDDGDALQGTP 98 (780)
T ss_pred CceEEEEEEEeecCCCCcCcCccccCCcCCCCHHHHHHHHHHHHHhCCCeEEEECCCCCCCch
Confidence 345899999999998764332 1112235677888899998877655 445999998754
No 64
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=98.91 E-value=1e-08 Score=88.45 Aligned_cols=58 Identities=12% Similarity=0.150 Sum_probs=38.9
Q ss_pred HHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCC
Q psy11941 55 QALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGN 134 (313)
Q Consensus 55 ~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GN 134 (313)
.+...+||+|+++|||||.+... ..+++.+.++++.. +| .. ..++|+++||||
T Consensus 37 a~~~l~PD~Vi~lGDL~D~G~~~--~~~e~~e~l~Rf~~---------------If-------~~---~~~~~~~~VpGN 89 (195)
T cd08166 37 ALNFVQPDIVIFLGDLMDEGSIA--NDDEYYSYVQRFIN---------------IF-------EV---PNGTKIIYLPGD 89 (195)
T ss_pred HHhccCCCEEEEeccccCCCCCC--CHHHHHHHHHHHHH---------------Hh-------cC---CCCCcEEEECCC
Confidence 33456899999999999998753 23344555554420 11 01 236899999999
Q ss_pred CCCCC
Q psy11941 135 HDDPS 139 (313)
Q Consensus 135 HD~~~ 139 (313)
||...
T Consensus 90 HDIG~ 94 (195)
T cd08166 90 NDIGG 94 (195)
T ss_pred CCcCC
Confidence 99765
No 65
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=98.88 E-value=8.1e-08 Score=95.50 Aligned_cols=219 Identities=17% Similarity=0.219 Sum_probs=114.7
Q ss_pred CCCCeEEEEEeeccccCcccCCcCcc---chhHHHHHHHHHHHHhcCCCEEE-EcCCcCCCCCCCHH--HHHHHHHHHHH
Q psy11941 17 DDRNTIRIMIASDIHLGYLETDRERG---NDSFVSFEEILEQALDQEVDMVL-LGGDLFHINKPSPT--TLKKCLETLRK 90 (313)
Q Consensus 17 ~~~~~mkilh~SD~Hlg~~~~~~~~~---~~~~~~l~~ii~~~~~~~~d~vv-~~GDlf~~~~~~~~--~~~~~~~~l~~ 90 (313)
+....++|+|++|+|-.......... ...+.....++++.+++..+.++ -+||+++....+.. .-+...+.|+
T Consensus 22 ~~~~~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~~~~g~~~~~~mN- 100 (517)
T COG0737 22 AETVKLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDYLTKGEPTVDLLN- 100 (517)
T ss_pred cCceeEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcCCeEEEeCCcccCCccccccccCCChHHHHHh-
Confidence 55668999999999987763322222 23666777888888887776544 49999998654322 1233444555
Q ss_pred hccCCCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCC--e--eEecccccCC
Q psy11941 91 YCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGL--V--NYFGKCTNLN 166 (313)
Q Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~--~--~~~~~~~~~~ 166 (313)
..+..+..+ |||++..+...+ .+.+....+ + |+........
T Consensus 101 --------------------------------~m~yDa~ti-GNHEFd~g~~~l--~~~~~~~~fp~l~aNv~~~~~~~~ 145 (517)
T COG0737 101 --------------------------------ALGYDAMTL-GNHEFDYGLEAL--ARLLDEAKFPVLSANVYDKNSTGP 145 (517)
T ss_pred --------------------------------hcCCcEEee-cccccccCHHHH--HHHHhccCCceEEeeeEecCCCCc
Confidence 345566666 999998864322 122222211 1 2222211111
Q ss_pred ceeeecEEEeeCCeEEEEEecC--CCchHHHHH---------Hhh--hcchhccCCCCCCCcceEEEeeccccCCCCcC-
Q psy11941 167 EITLNPLIIQKNETKVAIFGLG--YVKDERLCN---------MIK--HNKVKYMKPTDDKDIIYILVLHQNRPERGTVK- 232 (313)
Q Consensus 167 ~~~~~~~~l~~~~~~~~i~gl~--~~~~~~~~~---------~~~--~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~~~- 232 (313)
....++.+++.++.++.++|+- +........ ... ...+..++.+. .+ ..|+++|.+........
T Consensus 146 ~~~~Py~I~~~~g~KIgiIG~~~~~~~~~~~~~~~~~~~f~d~~e~~~~~i~elk~~~-vD-~iI~LsH~G~~~d~~~~~ 223 (517)
T COG0737 146 PFFKPYAIKEVGGVKIGIIGLTTPTIPTWEKPNAIEGVTFRDPIEAAKKYIPELKGEG-VD-VIIALSHLGIEDDLELAS 223 (517)
T ss_pred cCcCCeEEEecCCeEEEEEEecCCcccccccccccCCcEEcCHHHHHHHHHHHHHhcC-CC-EEEEEeccCcCccccccc
Confidence 1112334566788999999964 222111110 000 00111122211 34 89999999875321100
Q ss_pred cccc--ccCCCcccEEEeCCccCccccCC-CCCCCcccEEecCC
Q psy11941 233 NIAE--DSIPSFFHFILWGHEHECRIKPE-YNTKQRFHVCQPGS 273 (313)
Q Consensus 233 ~~~~--~~~~~~~d~v~~GH~H~~~~~~~-~~~~~~~~i~~~GS 273 (313)
..+. .....++|.++.||.|....... ....+...++.+|+
T Consensus 224 ~~~~~~~~~~~~iD~i~~GH~H~~~~~~~~~~~~~~t~ivqag~ 267 (517)
T COG0737 224 EVPGDVDVAVPGIDLIIGGHSHTVFPGGDKPGTVNGTPIVQAGE 267 (517)
T ss_pred cccccccccccCcceEeccCCcccccCCcccCccCCEEEEccCh
Confidence 0000 01113399999999995433211 00123455666665
No 66
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=98.88 E-value=3.9e-09 Score=88.47 Aligned_cols=87 Identities=23% Similarity=0.185 Sum_probs=48.3
Q ss_pred EEeeccccCcccCCcCcc--chhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCC-HHHHHHHHHHHHHhccCCCceeee
Q psy11941 25 MIASDIHLGYLETDRERG--NDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPS-PTTLKKCLETLRKYCIGDRSVFID 101 (313)
Q Consensus 25 lh~SD~Hlg~~~~~~~~~--~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~-~~~~~~~~~~l~~l~~~~~~~~~~ 101 (313)
+.+||+||+......... .......+.+.+.+.+.+||+|+++||+|+.+... ........+.+.++..
T Consensus 1 ~~isD~HL~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~-------- 72 (156)
T cd08165 1 MFLADTHLLGSILGHWLDKLRREWQMERSFQTSLWLLQPDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFG-------- 72 (156)
T ss_pred CccccchhcCCcccHHHHHHhhhHHHHHHHHHHHHhcCCCEEEECCCCCCCCccCCHHHHHHHHHHHHHHhc--------
Confidence 468999996533221100 00001122333445567899999999999986532 2333333333332210
Q ss_pred eccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCC
Q psy11941 102 VISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~ 139 (313)
...+.|+++|+||||...
T Consensus 73 --------------------~~~~~~i~~v~GNHD~~~ 90 (156)
T cd08165 73 --------------------HPPDLPLHVVVGNHDIGF 90 (156)
T ss_pred --------------------cCCCCeEEEEcCCCCcCC
Confidence 012579999999999854
No 67
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=98.81 E-value=7.6e-08 Score=88.32 Aligned_cols=57 Identities=28% Similarity=0.277 Sum_probs=32.3
Q ss_pred CCeEEEEEeeccccCcccCCc----CccchhHHHH-HHHHHHHHhcCCCEEE-EcCCcCCCCC
Q psy11941 19 RNTIRIMIASDIHLGYLETDR----ERGNDSFVSF-EEILEQALDQEVDMVL-LGGDLFHINK 75 (313)
Q Consensus 19 ~~~mkilh~SD~Hlg~~~~~~----~~~~~~~~~l-~~ii~~~~~~~~d~vv-~~GDlf~~~~ 75 (313)
...++|+|++|+|-....... ...-..++++ +++.+.+++.+++.++ -+||+|+...
T Consensus 3 ~~~ltILhtnD~Hg~l~~~~~~~~~~~~~gg~a~~i~~~~~~~~~~~~~~Llld~GD~~qGs~ 65 (282)
T cd07407 3 WGDINFLHTTDTHGWLGGHLNDPNYSADWGDFASFVEHMREKADQKGVDLLLVDTGDLHDGNG 65 (282)
T ss_pred cceEEEEEEcccccCCcCcCCcccccCCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCccCCee
Confidence 357899999999965432211 0111222222 3333444555677554 5999998753
No 68
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=98.78 E-value=1.4e-07 Score=94.50 Aligned_cols=191 Identities=19% Similarity=0.299 Sum_probs=101.4
Q ss_pred CCCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhc----CCCE-EEEcCCcCCCCCCCHHHH---HHHHHHHH
Q psy11941 18 DRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQ----EVDM-VLLGGDLFHINKPSPTTL---KKCLETLR 89 (313)
Q Consensus 18 ~~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~----~~d~-vv~~GDlf~~~~~~~~~~---~~~~~~l~ 89 (313)
....++|+|++|+|-....... ....+..+..+++..+++ +++. ++.+||+|..... ..+ ....++++
T Consensus 31 ~~~~ltil~tnD~Hg~~~~~~~--~~~G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs~~--s~~~~g~~~i~~mN 106 (551)
T PRK09558 31 KTYKITILHTNDHHGHFWRNEY--GEYGLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGVPE--SDLQDAEPDFRGMN 106 (551)
T ss_pred CceEEEEEEecccCCCcccccc--CCccHHHHHHHHHHHHHHhhccCCCEEEEcCCccccceEh--hhhcCCchhHHHHh
Confidence 4558999999999976543221 112566777788777743 5555 4449999986532 122 12233343
Q ss_pred HhccCCCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhC--CCe--eEecccccC
Q psy11941 90 KYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNS--GLV--NYFGKCTNL 165 (313)
Q Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~--~~~--~~~~~~~~~ 165 (313)
..+..+.++ ||||+..+...+ ...+... +++ ++....+.
T Consensus 107 ---------------------------------~~g~Da~tl-GNHEFD~G~~~L--~~~~~~a~fp~l~aNv~~~~~g- 149 (551)
T PRK09558 107 ---------------------------------LIGYDAMAV-GNHEFDNPLSVL--RKQEKWAKFPFLSANIYQKSTG- 149 (551)
T ss_pred ---------------------------------cCCCCEEcc-cccccCcCHHHH--HHhhccCCCCEEEEEEEECCCC-
Confidence 456666665 999998864321 1222222 211 12111100
Q ss_pred Cceeeec-EEEeeCCeEEEEEecCCCc------hH------------HHHHHhhhcchhccCCCCCCCcceEEEeecccc
Q psy11941 166 NEITLNP-LIIQKNETKVAIFGLGYVK------DE------------RLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRP 226 (313)
Q Consensus 166 ~~~~~~~-~~l~~~~~~~~i~gl~~~~------~~------------~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~ 226 (313)
+.. +.| .+++.++.++.|+|+-... +. ...+. +..++.+...+ .-|+++|....
T Consensus 150 ~~~-~~py~i~~~~G~kIgiiG~~t~~~~~~~~~~~~~~~~f~d~~e~a~~~-----v~~Lk~~~~~D-~IV~LsH~G~~ 222 (551)
T PRK09558 150 ERL-FKPYAIFDRQGLKIAVIGLTTEDTAKIGNPEYFTDIEFRDPAEEAKKV-----IPELKQTEKPD-VIIALTHMGHY 222 (551)
T ss_pred Ccc-cCCeEEEEECCEEEEEEEEeccccccccCCCCcCCceECCHHHHHHHH-----HHHHHhccCCC-EEEEEeccccc
Confidence 111 233 4457788999999963211 10 01111 11222112344 89999999874
Q ss_pred CCCC------cCccccccCC-CcccEEEeCCccCccc
Q psy11941 227 ERGT------VKNIAEDSIP-SFFHFILWGHEHECRI 256 (313)
Q Consensus 227 ~~~~------~~~~~~~~~~-~~~d~v~~GH~H~~~~ 256 (313)
.... .+......++ .++|+|+.||.|....
T Consensus 223 ~~~~~~~~~~~d~~la~~~~~~~IDvIlgGHsH~~~~ 259 (551)
T PRK09558 223 DDGEHGSNAPGDVEMARSLPAGGLDMIVGGHSQDPVC 259 (551)
T ss_pred cCCccCCCCccHHHHHHhCCccCceEEEeCCCCcccc
Confidence 2211 0110011122 3799999999998653
No 69
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.77 E-value=4.2e-07 Score=93.83 Aligned_cols=58 Identities=17% Similarity=0.288 Sum_probs=40.5
Q ss_pred CCeEEEEEeeccccCcccCC----cCccchhHHHHHHHHHHHHhcCCCEE-EEcCCcCCCCCC
Q psy11941 19 RNTIRIMIASDIHLGYLETD----RERGNDSFVSFEEILEQALDQEVDMV-LLGGDLFHINKP 76 (313)
Q Consensus 19 ~~~mkilh~SD~Hlg~~~~~----~~~~~~~~~~l~~ii~~~~~~~~d~v-v~~GDlf~~~~~ 76 (313)
...++|||++|+|......+ .....-.+..+..++++++++....| |.+||+|.....
T Consensus 113 ~~~LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~~Rae~~NtLllD~GD~iQGSpl 175 (814)
T PRK11907 113 TVDVRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEEAKKENPNVVLVDNGDTIQGTPL 175 (814)
T ss_pred ceEEEEEEEEeecCCcccccccccCccccccHHHHHHHHHHHHHhCCCEEEEecCCCCCCCcc
Confidence 34799999999997754322 11122356778888999988777654 459999998543
No 70
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=98.77 E-value=1.4e-07 Score=81.25 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=24.3
Q ss_pred HHHHHHHHHh-cCCCEEEEcCCcCCCCCCCHHHH
Q psy11941 49 FEEILEQALD-QEVDMVLLGGDLFHINKPSPTTL 81 (313)
Q Consensus 49 l~~ii~~~~~-~~~d~vv~~GDlf~~~~~~~~~~ 81 (313)
|.++...+.. .+||.|++.||||+....+.+..
T Consensus 32 L~~~~~~~~~~l~Pd~V~fLGDLfd~~w~~D~ef 65 (193)
T cd08164 32 LGHIVSMMQFWLKPDAVVVLGDLFSSQWIDDEEF 65 (193)
T ss_pred HHHHHHHHHHhcCCCEEEEeccccCCCcccHHHH
Confidence 5566666554 58999999999999876554444
No 71
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.76 E-value=3.1e-07 Score=99.37 Aligned_cols=204 Identities=19% Similarity=0.204 Sum_probs=109.0
Q ss_pred CeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEE-cCCcCCCCCCCHH-HHHHHHHHHHHhccCCCc
Q psy11941 20 NTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLL-GGDLFHINKPSPT-TLKKCLETLRKYCIGDRS 97 (313)
Q Consensus 20 ~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~-~GDlf~~~~~~~~-~~~~~~~~l~~l~~~~~~ 97 (313)
..++|+|+||+|... .....+..+++..++.+++.|++ +||+|+....+.. .-....+.|+
T Consensus 659 ~~l~Il~~nD~Hg~l---------~g~~r~~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln-------- 721 (1163)
T PRK09419 659 WELTILHTNDFHGHL---------DGAAKRVTKIKEVKEENPNTILVDAGDVYQGSLYSNLLKGLPVLKMMK-------- 721 (1163)
T ss_pred eEEEEEEEeecccCC---------CCHHHHHHHHHHHHhhCCCeEEEecCCCCCCcchhhhcCChHHHHHHh--------
Confidence 469999999999433 23456788899999889998888 9999987632110 1133444554
Q ss_pred eeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCC------------C--e--eEecc
Q psy11941 98 VFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSG------------L--V--NYFGK 161 (313)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~------------~--~--~~~~~ 161 (313)
..+.. +++.||||+..+... ....+...+ + + |+...
T Consensus 722 -------------------------~lg~d-~~~~GNHEfd~g~~~--l~~~l~~~~~~~~~~~~~~~~fp~l~aNv~~~ 773 (1163)
T PRK09419 722 -------------------------EMGYD-ASTFGNHEFDWGPDV--LPDWLKGGGDPKNRHQFEKPDFPFVASNIYVK 773 (1163)
T ss_pred -------------------------CcCCC-EEEecccccccChHH--HHHHHHhcccccccccccCCCCCEEEEEEEeC
Confidence 23333 457799999875432 223333322 1 1 22111
Q ss_pred -cccCCceeeecEEEeeCCeEEEEEecCCC--c----hH-----HHHHHhh--hcchhccCCCCCCCcceEEEeeccccC
Q psy11941 162 -CTNLNEITLNPLIIQKNETKVAIFGLGYV--K----DE-----RLCNMIK--HNKVKYMKPTDDKDIIYILVLHQNRPE 227 (313)
Q Consensus 162 -~~~~~~~~~~~~~l~~~~~~~~i~gl~~~--~----~~-----~~~~~~~--~~~~~~~~~~~~~~~~~Ilv~H~~~~~ 227 (313)
..........+.+++.++.++.|+|+--. . +. ....... ...++.++.....+ ..|+++|.+...
T Consensus 774 ~~~~~~~~~~py~I~e~~G~kIgiiGltt~~~~~~~~p~~~~~l~f~d~~e~~~~~v~~Lr~~~~~D-~VV~LsH~G~~~ 852 (1163)
T PRK09419 774 KTGKLVSWAKPYILVEVNGKKVGFIGLTTPETAYKTSPGNVKNLEFKDPAEAAKKWVKELKEKEKVD-AIIALTHLGSNQ 852 (1163)
T ss_pred CCCccccccCCEEEEEECCEEEEEEEecccccccccCCCCcCCcEEcCHHHHHHHHHHHHHhhcCCC-EEEEEecCCccc
Confidence 11110111123455778899999996311 0 00 0000000 00111222112334 899999998653
Q ss_pred CCCc-CccccccCC--CcccEEEeCCccCccccCCCCCCCcccEEecCC
Q psy11941 228 RGTV-KNIAEDSIP--SFFHFILWGHEHECRIKPEYNTKQRFHVCQPGS 273 (313)
Q Consensus 228 ~~~~-~~~~~~~~~--~~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS 273 (313)
.... ......+.+ .++|+|+.||.|...... .++..++.+|+
T Consensus 853 d~~~~~~~~~~lA~~v~gIDvIigGHsH~~~~~~----v~~~~ivqag~ 897 (1163)
T PRK09419 853 DRTTGEITGLELAKKVKGVDAIISAHTHTLVDKV----VNGTPVVQAYK 897 (1163)
T ss_pred cccccccHHHHHHHhCCCCCEEEeCCCCcccccc----CCCEEEEeCCh
Confidence 2110 000011211 469999999999876432 24566777775
No 72
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=98.74 E-value=1.4e-07 Score=87.76 Aligned_cols=48 Identities=23% Similarity=0.349 Sum_probs=32.0
Q ss_pred EEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhc----CCC-EEEEcCCcCCCCC
Q psy11941 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQ----EVD-MVLLGGDLFHINK 75 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~----~~d-~vv~~GDlf~~~~ 75 (313)
++|+|++|+|-.... ...+..+..+++..+++ +.+ +++.+||+|+.+.
T Consensus 1 l~IlhtnD~Hg~~~~------~gg~ar~a~~i~~~r~~~~~~~~~~l~ldaGD~~qGs~ 53 (313)
T cd08162 1 LQLLHTSDGESGLLA------EDDAPNFSALVNALKDEAAAEYDNTLTLSSGDNFIPGP 53 (313)
T ss_pred CeEEEecccccCccc------cCCHHHHHHHHHHHHHhhhccCCCeEEEecCccccCch
Confidence 479999999966432 12344566667776654 444 5566999998753
No 73
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=98.72 E-value=1.1e-06 Score=89.30 Aligned_cols=60 Identities=22% Similarity=0.339 Sum_probs=42.0
Q ss_pred CCCCeEEEEEeeccccCcccCC----cCccchhHHHHHHHHHHHHhcCCCEEEE-cCCcCCCCCC
Q psy11941 17 DDRNTIRIMIASDIHLGYLETD----RERGNDSFVSFEEILEQALDQEVDMVLL-GGDLFHINKP 76 (313)
Q Consensus 17 ~~~~~mkilh~SD~Hlg~~~~~----~~~~~~~~~~l~~ii~~~~~~~~d~vv~-~GDlf~~~~~ 76 (313)
.....++|+|++|+|......+ .....-.+..+..++++++++....+++ +||+|+....
T Consensus 21 ~~~~~L~IL~TnDlHg~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~n~llvD~GD~~qGsp~ 85 (649)
T PRK09420 21 AATVDLRIMETTDLHSNMMDFDYYKDKPTEKFGLVRTASLIKAARAEAKNSVLVDNGDLIQGSPL 85 (649)
T ss_pred CCCceEEEEEEcccccCccCCccccCCcccccCHHHHHHHHHHHHHhCCCEEEEECCCcCCCchh
Confidence 4466899999999997754322 1112235677888999998876665554 9999987643
No 74
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=98.72 E-value=3.9e-07 Score=92.40 Aligned_cols=56 Identities=21% Similarity=0.328 Sum_probs=39.0
Q ss_pred eEEEEEeeccccCcccCC----cCccchhHHHHHHHHHHHHhcCCCEEE-EcCCcCCCCCC
Q psy11941 21 TIRIMIASDIHLGYLETD----RERGNDSFVSFEEILEQALDQEVDMVL-LGGDLFHINKP 76 (313)
Q Consensus 21 ~mkilh~SD~Hlg~~~~~----~~~~~~~~~~l~~ii~~~~~~~~d~vv-~~GDlf~~~~~ 76 (313)
.++|+|++|+|......+ .....-.+..+..++++++++....|+ -+||+|+....
T Consensus 2 ~l~Il~TnDlH~~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~n~lllD~GD~~qGsp~ 62 (626)
T TIGR01390 2 DLRIVETTDLHTNLMDYDYYKDKPTDKFGLTRTATLIKQARAEVKNSVLVDNGDLIQGSPL 62 (626)
T ss_pred eEEEEEEcCCccCccCCcccCCCCCCCcCHHHHHHHHHHHHhhCCCeEEEECCCcCCCccc
Confidence 589999999997764332 111123567788889998877665544 49999997643
No 75
>PHA02239 putative protein phosphatase
Probab=98.69 E-value=5.4e-08 Score=86.93 Aligned_cols=71 Identities=24% Similarity=0.380 Sum_probs=53.0
Q ss_pred EEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhc--CCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCcee
Q psy11941 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQ--EVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVF 99 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~--~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 99 (313)
||++++||+|... ..|.++++.+... ..|.++++||+.|.+..+.+.+..+++.+.
T Consensus 1 m~~~~IsDIHG~~------------~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s~~v~~~l~~~~~---------- 58 (235)
T PHA02239 1 MAIYVVPDIHGEY------------QKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFDLMS---------- 58 (235)
T ss_pred CeEEEEECCCCCH------------HHHHHHHHHHhhcCCCCCEEEEecCcCCCCCChHHHHHHHHHHhh----------
Confidence 6899999999322 3477888887543 369999999999998776666665555432
Q ss_pred eeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCC
Q psy11941 100 IDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDP 138 (313)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~ 138 (313)
...++++++||||..
T Consensus 59 ------------------------~~~~~~~l~GNHE~~ 73 (235)
T PHA02239 59 ------------------------NDDNVVTLLGNHDDE 73 (235)
T ss_pred ------------------------cCCCeEEEECCcHHH
Confidence 235799999999974
No 76
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=98.64 E-value=7.4e-08 Score=84.92 Aligned_cols=88 Identities=25% Similarity=0.255 Sum_probs=55.9
Q ss_pred eEEEEEeeccccCcccCCcCccc-----hhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCC-HHHHHHHHHHHHHhccC
Q psy11941 21 TIRIMIASDIHLGYLETDRERGN-----DSFVSFEEILEQALDQEVDMVLLGGDLFHINKPS-PTTLKKCLETLRKYCIG 94 (313)
Q Consensus 21 ~mkilh~SD~Hlg~~~~~~~~~~-----~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~-~~~~~~~~~~l~~l~~~ 94 (313)
.-+.+.+||+|+|....-..++. .....++.+-+.+..++|+.+|+.||++|....+ .+....+..++..+
T Consensus 19 ~~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~--- 95 (235)
T COG1407 19 LGRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKSLRQEKEEVREFLELL--- 95 (235)
T ss_pred cCcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCccccccCccccccHHHHHHHHHHh---
Confidence 44689999999998543211111 2222333333466789999999999999997653 33333333333322
Q ss_pred CCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCC
Q psy11941 95 DRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSG 140 (313)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~ 140 (313)
....|++|+||||....
T Consensus 96 -----------------------------~~~evi~i~GNHD~~i~ 112 (235)
T COG1407 96 -----------------------------DEREVIIIRGNHDNGIE 112 (235)
T ss_pred -----------------------------ccCcEEEEeccCCCccc
Confidence 12369999999999873
No 77
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.63 E-value=9.9e-07 Score=95.50 Aligned_cols=56 Identities=21% Similarity=0.428 Sum_probs=41.8
Q ss_pred CeEEEEEeeccccCcccCC----cCccchhHHHHHHHHHHHHhcCCCEEEE-cCCcCCCCC
Q psy11941 20 NTIRIMIASDIHLGYLETD----RERGNDSFVSFEEILEQALDQEVDMVLL-GGDLFHINK 75 (313)
Q Consensus 20 ~~mkilh~SD~Hlg~~~~~----~~~~~~~~~~l~~ii~~~~~~~~d~vv~-~GDlf~~~~ 75 (313)
..++|+|++|+|......+ .....-.+..+..+++.++++.++.|++ +||+|+...
T Consensus 40 ~~l~il~tnD~Hg~l~~~~y~~~~~~~~~Glar~at~i~~~r~~~~n~llld~GD~~qGs~ 100 (1163)
T PRK09419 40 VNIQILATTDLHGNFMDYDYASDKETTGFGLAQTATLIKKARKENPNTLLVDNGDLIQGNP 100 (1163)
T ss_pred eEEEEEEEecccccccccccccCCCCCCcCHHHHHHHHHHHHHhCCCeEEEeCCCccCCCh
Confidence 4799999999997754321 1111235677889999999888888777 999998763
No 78
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=98.63 E-value=2.9e-06 Score=82.09 Aligned_cols=109 Identities=13% Similarity=0.179 Sum_probs=66.8
Q ss_pred CCCchHHHHHHhhhcchhccCCCCCCCcceEEEeeccccCCCC--c-------Cccc----cccC-C-CcccEEEeCCcc
Q psy11941 188 GYVKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGT--V-------KNIA----EDSI-P-SFFHFILWGHEH 252 (313)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~--~-------~~~~----~~~~-~-~~~d~v~~GH~H 252 (313)
++++++++.|+.++++. ..++..|+++|+++...+. . .... .+++ . .++.++++||+|
T Consensus 318 G~L~eeQL~WLeqeLa~-------a~~k~VVVf~HHPp~s~g~~~~Dp~~pg~~~~n~~eLldLL~~ypnV~aVfsGHvH 390 (496)
T TIGR03767 318 GSLGQTQFKWIKDTLRA-------SSDTLFVLFSHHTSWSMVNELTDPVDPGEKRHLGTELVSLLLEHPNVLAWVNGHTH 390 (496)
T ss_pred CccCHHHHHHHHHHHhc-------CCCCCEEEEECCCCccccccccccccccccccCHHHHHHHHhcCCCceEEEECCcC
Confidence 45678899998776532 2245899999998653321 0 0000 1122 2 368899999999
Q ss_pred CccccCCCCC-----CCcccEEecCCCceeccccCccccccEEEEEEe---CCceeEEEEeCCCCCC
Q psy11941 253 ECRIKPEYNT-----KQRFHVCQPGSPVATSLCAGEAVQKKCGILMCN---KQNYKLVPRSLETVRP 311 (313)
Q Consensus 253 ~~~~~~~~~~-----~~~~~i~~~GS~~~~~~~e~~~~~~g~~vv~~~---~~~~~~~~i~l~~~r~ 311 (313)
.......... ..+.+-+.++|.. +.|+.|-++++. ++.+++...-++++-|
T Consensus 391 ~n~i~~~~~~~~~~p~~gfweI~TaSlv--------dfPq~~Ri~Ei~~n~dgt~si~tt~vd~~~~ 449 (496)
T TIGR03767 391 SNKITAHRRVEGVGKDKGFWEINTASHI--------DFPQQGRIIELADNQDGTVSIFTTLIESAAP 449 (496)
T ss_pred CCccccccCCCCCCCcCCeEEEeccccc--------cCCCCceEEEEEeCCCCcEEEEEEecccCCC
Confidence 8875432111 1245555666611 367888899986 3567888777766554
No 79
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=98.60 E-value=9.1e-08 Score=83.94 Aligned_cols=78 Identities=26% Similarity=0.267 Sum_probs=47.1
Q ss_pred EEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCC----CCHHHHHHH-HHHHHHhccCCCcee
Q psy11941 25 MIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINK----PSPTTLKKC-LETLRKYCIGDRSVF 99 (313)
Q Consensus 25 lh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~----~~~~~~~~~-~~~l~~l~~~~~~~~ 99 (313)
+++||+|+|...... ...+...++...+.++|.|+++||+||... ......... ...++.+
T Consensus 1 ~~iSDlHlg~~~~~~------~~~~~~~~~~~~~~~~~~lvl~GDi~d~~~~~~~~~~~~~~~~~~~l~~~~-------- 66 (217)
T cd07398 1 LFISDLHLGDGGPAA------DFLLLFLLAALALGEADALYLLGDIFDLWFGDDEVVPPAAHEVLAALLRLA-------- 66 (217)
T ss_pred CEeeeecCCCCCCCH------HHHHHHHHhhhccCCCCEEEEeccEEEEEecCCCCCChHHHHHHHHHHHHH--------
Confidence 479999999854321 112333333222468999999999998521 111222222 2233221
Q ss_pred eeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCC
Q psy11941 100 IDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~ 139 (313)
..+.+|++++||||...
T Consensus 67 -----------------------~~~~~v~~v~GNHD~~~ 83 (217)
T cd07398 67 -----------------------DRGTRVYYVPGNHDFLL 83 (217)
T ss_pred -----------------------HCCCeEEEECCCchHHH
Confidence 35689999999999876
No 80
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=98.59 E-value=1.2e-06 Score=87.71 Aligned_cols=191 Identities=18% Similarity=0.186 Sum_probs=98.0
Q ss_pred EEEEEeeccccCcccCCcC---------ccchhHHHHHHHHHHHHhcCCCE-EEEcCCcCCCCCCCHHH-HHHHHHHHHH
Q psy11941 22 IRIMIASDIHLGYLETDRE---------RGNDSFVSFEEILEQALDQEVDM-VLLGGDLFHINKPSPTT-LKKCLETLRK 90 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~~---------~~~~~~~~l~~ii~~~~~~~~d~-vv~~GDlf~~~~~~~~~-~~~~~~~l~~ 90 (313)
++|||++|+|-........ .....+..+..+++..++..+.. ++.+||.|.....+.-. =+...++++
T Consensus 1 ltILhtND~Hg~l~~~~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~~n~l~ldaGD~~~gs~~~~~~~g~~~i~~~N- 79 (550)
T TIGR01530 1 LSIIHINDHHSHLEPEELEIALAGEQLKAAIGGFAALNAEINKLRAESKNALVLHAGDAIIGTLYFTLFGGRADAALMN- 79 (550)
T ss_pred CEEEEEccccccccCcccccccCCCccccccCCHHHHHHHHHHHHhhCCCeEEEECCCCCCCccchhhcCCHHHHHHHh-
Confidence 4799999999664332110 01236778888999988776654 55599999875332111 012233333
Q ss_pred hccCCCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCC--e--eEecccc-cC
Q psy11941 91 YCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGL--V--NYFGKCT-NL 165 (313)
Q Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~--~--~~~~~~~-~~ 165 (313)
..++.+. +.||||+..+...+ ...+....+ + ++..... ..
T Consensus 80 --------------------------------~~g~Da~-~lGNHEFd~G~~~l--~~~~~~~~fp~l~aNv~~~~~~~~ 124 (550)
T TIGR01530 80 --------------------------------AAGFDFF-TLGNHEFDAGNEGL--KEFLEPLEIPVLSANVIPDAASIL 124 (550)
T ss_pred --------------------------------ccCCCEE-EeccccccCCHHHH--HHHHHhCCCCEEEEeeecCCCccc
Confidence 3444544 55999998754322 233333322 1 1211100 01
Q ss_pred CceeeecEEEeeCCeEEEEEecCC--CchH------HHH--HHhh--hcchhccCCCCCCCcceEEEeeccccCCCCcCc
Q psy11941 166 NEITLNPLIIQKNETKVAIFGLGY--VKDE------RLC--NMIK--HNKVKYMKPTDDKDIIYILVLHQNRPERGTVKN 233 (313)
Q Consensus 166 ~~~~~~~~~l~~~~~~~~i~gl~~--~~~~------~~~--~~~~--~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~~~~ 233 (313)
.....+..++..++.++.|+|+-- .... .+. ...+ ...++.++. ...+ .-|+++|...... ..
T Consensus 125 ~~~~~p~~i~~~~g~kIgiiGl~~~~~~~~~~~~~~~~~f~d~~~~~~~~v~~Lk~-~g~D-~II~lsH~g~~~d---~~ 199 (550)
T TIGR01530 125 HGKWKPSAIFERAGEKIAIIGLDTVKKTVESSSPGKDIKFIDEIAAAQIAANALKQ-QGIN-KIILLSHAGFEKN---CE 199 (550)
T ss_pred ccCcCceEEEEECCeEEEEEEeecCcccccccCCCCceEECCHHHHHHHHHHHHHh-CCCC-EEEEEecCCcHHH---HH
Confidence 111112345567889999999731 1000 000 0000 001112222 1234 8899999864310 01
Q ss_pred cccccCCCcccEEEeCCccCcc
Q psy11941 234 IAEDSIPSFFHFILWGHEHECR 255 (313)
Q Consensus 234 ~~~~~~~~~~d~v~~GH~H~~~ 255 (313)
+. ..+ .++|+|+.||.|...
T Consensus 200 la-~~~-~~iD~IigGHsH~~~ 219 (550)
T TIGR01530 200 IA-QKI-NDIDVIVSGDSHYLL 219 (550)
T ss_pred HH-hcC-CCCCEEEeCCCCccc
Confidence 11 112 469999999999965
No 81
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=98.49 E-value=3.3e-07 Score=80.46 Aligned_cols=73 Identities=21% Similarity=0.164 Sum_probs=52.5
Q ss_pred EEeeccccCcccCCcCccchhHHHHHHHHHHHH--------hcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCC
Q psy11941 25 MIASDIHLGYLETDRERGNDSFVSFEEILEQAL--------DQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDR 96 (313)
Q Consensus 25 lh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~--------~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~ 96 (313)
+.+||+|-. +.+|+++++.+. ..+.|.++++||+++.+..+.+.++.+++.-.+..
T Consensus 1 ~vi~DIHG~------------~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~---- 64 (208)
T cd07425 1 VAIGDLHGD------------LDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAA---- 64 (208)
T ss_pred CEEeCccCC------------HHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHH----
Confidence 478999933 456888888775 45789999999999998765555555444322211
Q ss_pred ceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCC
Q psy11941 97 SVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~ 139 (313)
..+.++++++||||...
T Consensus 65 --------------------------~~~~~v~~l~GNHE~~~ 81 (208)
T cd07425 65 --------------------------KAGGKVHFLLGNHELMN 81 (208)
T ss_pred --------------------------hcCCeEEEeeCCCcHHH
Confidence 24568999999999765
No 82
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=98.48 E-value=3.1e-06 Score=69.45 Aligned_cols=84 Identities=18% Similarity=0.114 Sum_probs=51.6
Q ss_pred CeEEEEEeeccccCcccCCcCccchhHHHHHHHHHH--HHhcCC-CEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCC
Q psy11941 20 NTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQ--ALDQEV-DMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDR 96 (313)
Q Consensus 20 ~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~--~~~~~~-d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~ 96 (313)
+|..+-.+||+|+|...--..+.....+-+++++=. -+--++ |.+.+.||+.-+.+. -..+.+.+.+|
T Consensus 2 sm~mmyfisDtHfgh~nvi~~~pfsn~~ehd~vil~N~nntv~p~D~lwhLGDl~~~~n~----~~~a~~IlerL----- 72 (186)
T COG4186 2 SMTMMYFISDTHFGHKNVISMRPFSNPDEHDEVILSNWNNTVGPDDVLWHLGDLSSGANR----ERAAGLILERL----- 72 (186)
T ss_pred ceeEEEEecccccCCcceeecCCCCCHHHHhHHHHHhHHhcCCccceEEEecccccccch----hhHHHHHHHHc-----
Confidence 466788999999998654333333333334433311 112234 788899999877654 23333445543
Q ss_pred ceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCC
Q psy11941 97 SVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSG 140 (313)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~ 140 (313)
+-.+.+|+||||.-..
T Consensus 73 ----------------------------nGrkhlv~GNhDk~~~ 88 (186)
T COG4186 73 ----------------------------NGRKHLVPGNHDKCHP 88 (186)
T ss_pred ----------------------------CCcEEEeeCCCCCCcc
Confidence 2366999999998763
No 83
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=98.48 E-value=2.3e-06 Score=82.02 Aligned_cols=86 Identities=23% Similarity=0.321 Sum_probs=57.6
Q ss_pred CCCCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHH-----hcCCCEEEEcCCcCCCCC--C----------CHH
Q psy11941 17 DDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQAL-----DQEVDMVLLGGDLFHINK--P----------SPT 79 (313)
Q Consensus 17 ~~~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~-----~~~~d~vv~~GDlf~~~~--~----------~~~ 79 (313)
.....++++.+||+|.|...... ..|..+++... +.++..++++||+.|.-. | ..+
T Consensus 221 ~~~e~v~v~~isDih~GSk~F~~-------~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~ 293 (481)
T COG1311 221 TGDERVYVALISDIHRGSKEFLE-------DEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYE 293 (481)
T ss_pred CCCcceEEEEEeeeecccHHHHH-------HHHHHHHHHhcCCcccccceEEEEEecccccccccccCcccccccccchH
Confidence 44557899999999999865422 23344444433 446789999999998421 1 123
Q ss_pred HHHHHHHHHHHhccCCCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCC
Q psy11941 80 TLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSG 140 (313)
Q Consensus 80 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~ 140 (313)
.++.+.+.|... ...+.|++.|||||....
T Consensus 294 qy~~~A~~L~~v-------------------------------p~~I~v~i~PGnhDa~r~ 323 (481)
T COG1311 294 QYEELAEFLDQV-------------------------------PEHIKVFIMPGNHDAVRQ 323 (481)
T ss_pred HHHHHHHHHhhC-------------------------------CCCceEEEecCCCCcccc
Confidence 466666666643 345789999999999763
No 84
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=98.48 E-value=2.8e-07 Score=84.15 Aligned_cols=68 Identities=25% Similarity=0.326 Sum_probs=51.2
Q ss_pred EEEEEeeccccCcccCCcCccchhHHHHHHHHHHHH-hcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceee
Q psy11941 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQAL-DQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFI 100 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~-~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 100 (313)
|+++++||+|-. +..|+++++.+. +.++|.++++||+++.+..+.+.++ .+.+
T Consensus 1 M~~~vIGDIHG~------------~~~l~~ll~~~~~~~~~D~li~lGDlVdrGp~s~~vl~----~l~~---------- 54 (275)
T PRK00166 1 MATYAIGDIQGC------------YDELQRLLEKIDFDPAKDTLWLVGDLVNRGPDSLEVLR----FVKS---------- 54 (275)
T ss_pred CcEEEEEccCCC------------HHHHHHHHHhcCCCCCCCEEEEeCCccCCCcCHHHHHH----HHHh----------
Confidence 689999999933 346888888775 3578999999999999866544333 4442
Q ss_pred eeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCC
Q psy11941 101 DVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDP 138 (313)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~ 138 (313)
.+.++++|.||||..
T Consensus 55 -----------------------l~~~~~~VlGNHD~~ 69 (275)
T PRK00166 55 -----------------------LGDSAVTVLGNHDLH 69 (275)
T ss_pred -----------------------cCCCeEEEecChhHH
Confidence 234789999999974
No 85
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=98.46 E-value=1e-06 Score=80.01 Aligned_cols=18 Identities=22% Similarity=0.497 Sum_probs=14.6
Q ss_pred cCCCEEEEcCCcCCCCCC
Q psy11941 59 QEVDMVLLGGDLFHINKP 76 (313)
Q Consensus 59 ~~~d~vv~~GDlf~~~~~ 76 (313)
.++|+||++||++...+.
T Consensus 27 ~~~D~lI~~GDf~~~~~~ 44 (262)
T cd00844 27 TKVDLLICCGDFQAVRNE 44 (262)
T ss_pred CCCcEEEEcCCCCCcCCc
Confidence 579999999999866543
No 86
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=98.42 E-value=5.2e-07 Score=80.58 Aligned_cols=52 Identities=27% Similarity=0.332 Sum_probs=39.3
Q ss_pred EEEEEeeccccCcccCCcCccchhHHHHHHHHHHHH----h------cCCCEEEEcCCcCCCCCCCHHHHHHHH
Q psy11941 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQAL----D------QEVDMVLLGGDLFHINKPSPTTLKKCL 85 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~----~------~~~d~vv~~GDlf~~~~~~~~~~~~~~ 85 (313)
|||+++||+|- .+.+|+++++.+. + .+.|.++++||+++.+..+.+.++.+.
T Consensus 1 ~~i~vigDIHG------------~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~evl~~l~ 62 (234)
T cd07423 1 GPFDIIGDVHG------------CYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVM 62 (234)
T ss_pred CCeEEEEECCC------------CHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHHHHHHHH
Confidence 68999999993 3456888888873 1 147899999999999877666665443
No 87
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=98.40 E-value=2.2e-05 Score=70.88 Aligned_cols=80 Identities=18% Similarity=0.236 Sum_probs=54.3
Q ss_pred EEEEeeccccCcccCCcCccchhHHHHHHHHHHHH-----------hcCCCEEEEcCCcCCCCCC---------------
Q psy11941 23 RIMIASDIHLGYLETDRERGNDSFVSFEEILEQAL-----------DQEVDMVLLGGDLFHINKP--------------- 76 (313)
Q Consensus 23 kilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~-----------~~~~d~vv~~GDlf~~~~~--------------- 76 (313)
+|+.+||+|+|..... ...|+.+++... ..++..+|++||+.+....
T Consensus 1 ~i~~vSgL~ig~~~~~-------~~~l~ll~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~~~~~~~~~~~~~~~~~ 73 (257)
T cd07387 1 YIALVSGLGLGGNAES-------SLSLQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKSTQGKDSQTKARYLTKKS 73 (257)
T ss_pred CEEEEcccccCCCccc-------hHHHHHHHHHhcCCCCCccccccccceEEEEEECCcccccccccchhhhhhcccccc
Confidence 4789999999986322 123444444443 2355679999999986431
Q ss_pred ---CHHHHHHHHHHHHHhccCCCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCC
Q psy11941 77 ---SPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSG 140 (313)
Q Consensus 77 ---~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~ 140 (313)
..+.++.+.++|.++. ..+||.++|||||....
T Consensus 74 ~~~~~~~~~~ld~~l~~l~-------------------------------~~i~V~imPG~~Dp~~~ 109 (257)
T cd07387 74 SAASVEAVKELDNFLSQLA-------------------------------SSVPVDLMPGEFDPANH 109 (257)
T ss_pred chhhHHHHHHHHHHHHhhh-------------------------------cCCeEEECCCCCCcccc
Confidence 2344666667776552 46899999999999774
No 88
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=98.30 E-value=1.1e-06 Score=77.01 Aligned_cols=44 Identities=23% Similarity=0.230 Sum_probs=34.5
Q ss_pred EEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHh-cCCCEEEEcCCcCCCCCCC
Q psy11941 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALD-QEVDMVLLGGDLFHINKPS 77 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~-~~~d~vv~~GDlf~~~~~~ 77 (313)
.||+++||+|-. +..|+++++.+.. .++|.++++||+++.+..+
T Consensus 1 ~ri~~isDiHg~------------~~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~~ 45 (207)
T cd07424 1 GRDFVVGDIHGH------------YSLLQKALDAVGFDPARDRLISVGDLIDRGPES 45 (207)
T ss_pred CCEEEEECCCCC------------HHHHHHHHHHcCCCCCCCEEEEeCCcccCCCCH
Confidence 379999999922 3467888887764 4799999999999987654
No 89
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=98.29 E-value=1.5e-06 Score=78.27 Aligned_cols=54 Identities=20% Similarity=0.218 Sum_probs=40.0
Q ss_pred EEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHh---------cCCCEEEEcCCcCCCCCCCHHHHHHHHHH
Q psy11941 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALD---------QEVDMVLLGGDLFHINKPSPTTLKKCLET 87 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~---------~~~d~vv~~GDlf~~~~~~~~~~~~~~~~ 87 (313)
||+.++||+|-. +..|.++++.+.- .+-|.+++.||+.|.+..|.+.++.+++.
T Consensus 1 ~~~~vIGDIHG~------------~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~~~ 63 (245)
T PRK13625 1 MKYDIIGDIHGC------------YQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWEL 63 (245)
T ss_pred CceEEEEECccC------------HHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHHHH
Confidence 689999999933 3457777776542 13578999999999998777766665554
No 90
>KOG1378|consensus
Probab=98.22 E-value=1.5e-05 Score=76.36 Aligned_cols=183 Identities=16% Similarity=0.056 Sum_probs=97.5
Q ss_pred CCCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCc
Q psy11941 18 DRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRS 97 (313)
Q Consensus 18 ~~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~ 97 (313)
+....++++++|+=....... .....+. ..++|+|++.|||.....-....-..+.+++..+
T Consensus 144 ~~~~~~~~i~GDlG~~~~~~s----------~~~~~~~--~~k~d~vlhiGDlsYa~~~~n~~wD~f~r~vEp~------ 205 (452)
T KOG1378|consen 144 QDSPTRAAIFGDMGCTEPYTS----------TLRNQEE--NLKPDAVLHIGDLSYAMGYSNWQWDEFGRQVEPI------ 205 (452)
T ss_pred ccCceeEEEEccccccccccc----------hHhHHhc--ccCCcEEEEecchhhcCCCCccchHHHHhhhhhh------
Confidence 446889999999865553321 1122211 2269999999999876443323445555555554
Q ss_pred eeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEeccccc-CCceeeecEEEe
Q psy11941 98 VFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTN-LNEITLNPLIIQ 176 (313)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~ 176 (313)
...+|..++.|||+....... .|.. +.+.+..+.. -+...--...++
T Consensus 206 -------------------------As~vPymv~~GNHE~d~~~~~-----~F~~--y~~Rf~mP~~~s~s~~~l~YSfd 253 (452)
T KOG1378|consen 206 -------------------------ASYVPYMVCSGNHEIDWPPQP-----CFVP--YSARFNMPGNSSESDSNLYYSFD 253 (452)
T ss_pred -------------------------hccCceEEecccccccCCCcc-----cccc--cceeeccCCCcCCCCCceeEEEe
Confidence 356899999999999874211 0110 0001111100 000000012333
Q ss_pred eCCeEEEEEecCC-------CchHHHHHHhhhcchhccCCCCCC-CcceEEEeeccccCCCC-------c--C---cccc
Q psy11941 177 KNETKVAIFGLGY-------VKDERLCNMIKHNKVKYMKPTDDK-DIIYILVLHQNRPERGT-------V--K---NIAE 236 (313)
Q Consensus 177 ~~~~~~~i~gl~~-------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~H~~~~~~~~-------~--~---~~~~ 236 (313)
.|. +.+++++- ....|..|+.++++.- +.. ....|++.|-|...... . . .+..
T Consensus 254 ~G~--vhfv~lsse~~~~~~~~~~QY~WL~~dL~~v-----~r~~tPWlIv~~HrP~Y~S~~~~~~reG~~~~~~~~LE~ 326 (452)
T KOG1378|consen 254 VGG--VHFVVLSTETYYNFLKGTAQYQWLERDLASV-----DRKKTPWLIVQGHRPMYCSSNDAHYREGEFESMREGLEP 326 (452)
T ss_pred ecc--EEEEEEeccccccccccchHHHHHHHHHHHh-----cccCCCeEEEEecccceecCCchhhccCcchhhHHHHHH
Confidence 333 33433321 2335667776654321 111 34789999998753211 0 0 1223
Q ss_pred ccCCCcccEEEeCCccCcccc
Q psy11941 237 DSIPSFFHFILWGHEHECRIK 257 (313)
Q Consensus 237 ~~~~~~~d~v~~GH~H~~~~~ 257 (313)
.+...++|+|++||.|.+-..
T Consensus 327 l~~~~~VDvvf~GHvH~YER~ 347 (452)
T KOG1378|consen 327 LFVKYKVDVVFWGHVHRYERF 347 (452)
T ss_pred HHHHhceeEEEeccceehhcc
Confidence 345688999999999987553
No 91
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=98.20 E-value=1.9e-06 Score=76.16 Aligned_cols=53 Identities=23% Similarity=0.213 Sum_probs=40.6
Q ss_pred CCCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhc-CCCEEEEcCCcCCCCCCCHHHHH
Q psy11941 18 DRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQ-EVDMVLLGGDLFHINKPSPTTLK 82 (313)
Q Consensus 18 ~~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~-~~d~vv~~GDlf~~~~~~~~~~~ 82 (313)
...-.|+..+||+|-. +..|+++++.+... +.|.++++||+.|.+..+.++++
T Consensus 13 ~~~~~ri~vigDIHG~------------~~~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s~~vl~ 66 (218)
T PRK11439 13 GHQWRHIWLVGDIHGC------------FEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSLRCLQ 66 (218)
T ss_pred CCCCCeEEEEEcccCC------------HHHHHHHHHhcCCCcccCEEEEcCcccCCCcCHHHHHH
Confidence 3334589999999943 45688899888654 78999999999999876655444
No 92
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=98.20 E-value=2.8e-06 Score=74.91 Aligned_cols=69 Identities=22% Similarity=0.220 Sum_probs=50.4
Q ss_pred EEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeeeecc
Q psy11941 25 MIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDVIS 104 (313)
Q Consensus 25 lh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 104 (313)
+++||+|-. +..|.++++.+.....|.+|++||+++.+..+.+.+. .+..+.
T Consensus 1 ~~igDiHg~------------~~~l~~~l~~~~~~~~d~li~lGD~vdrg~~~~~~l~----~l~~~~------------ 52 (225)
T cd00144 1 YVIGDIHGC------------LDDLLRLLEKIGFPPNDKLIFLGDYVDRGPDSVEVID----LLLALK------------ 52 (225)
T ss_pred CEEeCCCCC------------HHHHHHHHHHhCCCCCCEEEEECCEeCCCCCcHHHHH----HHHHhc------------
Confidence 368999933 2457888888877789999999999999876554444 333321
Q ss_pred CcccccccCCCccCCCCCCCCCcEEEEcCCCCCCC
Q psy11941 105 DPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~ 139 (313)
....+++++.||||...
T Consensus 53 ------------------~~~~~~~~l~GNHe~~~ 69 (225)
T cd00144 53 ------------------ILPDNVILLRGNHEDML 69 (225)
T ss_pred ------------------CCCCcEEEEccCchhhh
Confidence 11458999999999865
No 93
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=98.18 E-value=1.1e-05 Score=67.69 Aligned_cols=41 Identities=22% Similarity=0.189 Sum_probs=27.0
Q ss_pred ceEEEeeccccCC-CCcCccccccCCCcccEEEeCCccCccc
Q psy11941 216 IYILVLHQNRPER-GTVKNIAEDSIPSFFHFILWGHEHECRI 256 (313)
Q Consensus 216 ~~Ilv~H~~~~~~-~~~~~~~~~~~~~~~d~v~~GH~H~~~~ 256 (313)
--|+++|.|+... ++...+.+-+-...++.++.||+|+...
T Consensus 160 ~fivM~HYPP~s~~~t~~~~sevlee~rv~~~lyGHlHgv~~ 201 (230)
T COG1768 160 KFIVMTHYPPFSDDGTPGPFSEVLEEGRVSKCLYGHLHGVPR 201 (230)
T ss_pred eEEEEEecCCCCCCCCCcchHHHHhhcceeeEEeeeccCCCC
Confidence 5788999987643 2222222222246789999999999873
No 94
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.15 E-value=8.2e-05 Score=67.24 Aligned_cols=171 Identities=18% Similarity=0.167 Sum_probs=95.1
Q ss_pred EEEEeeccccCcccCCcCccchhHHHHHHHHHHHHh-cCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeee
Q psy11941 23 RIMIASDIHLGYLETDRERGNDSFVSFEEILEQALD-QEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFID 101 (313)
Q Consensus 23 kilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~-~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 101 (313)
|||+++|+=- . .....+...+...++ +++|+++..||.+..+.... ....+.|.
T Consensus 1 ~ilfigdi~g-~---------~G~~~~~~~l~~lk~~~~~D~vi~NgEn~~gg~gl~---~~~~~~L~------------ 55 (255)
T cd07382 1 KILFIGDIVG-K---------PGRKAVKEHLPKLKKEYKIDFVIANGENAAGGKGIT---PKIAKELL------------ 55 (255)
T ss_pred CEEEEEeCCC-H---------HHHHHHHHHHHHHHHHCCCCEEEECCccccCCCCCC---HHHHHHHH------------
Confidence 5788888852 2 233456677777664 58999999999998763211 34444555
Q ss_pred eccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEecccccCCceeee-cEEEeeCCe
Q psy11941 102 VISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLN-PLIIQKNET 180 (313)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~ 180 (313)
..++.++.+ |||++..+ .....+......-........ .... ..+++.++.
T Consensus 56 ---------------------~~G~D~iTl-GNH~fD~g----el~~~l~~~~~~l~~aN~~~~--~pg~~~~i~~~~G~ 107 (255)
T cd07382 56 ---------------------SAGVDVITM-GNHTWDKK----EILDFIDEEPRLLRPANYPPG--TPGRGYGVVEVNGK 107 (255)
T ss_pred ---------------------hcCCCEEEe-cccccCcc----hHHHHHhcCcCceEeeecCCC--CCCCCeEEEEECCE
Confidence 457788877 99998775 123444333211111111100 0011 244566788
Q ss_pred EEEEEecC---CC----chHH-HHHHhhhcchhccCCCCCCCcceEEEeeccccCCCCcCccccccCCCcccEEEeCCcc
Q psy11941 181 KVAIFGLG---YV----KDER-LCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHEH 252 (313)
Q Consensus 181 ~~~i~gl~---~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~~~~~~~~~~~~~~d~v~~GH~H 252 (313)
++.|+++- +. ++.+ ..+.++ .++. ..+ +.|+.+|...... +......++.++|+|+.||.|
T Consensus 108 kIaVigl~g~~~~~~~~~P~~~~~~~v~-----~lk~--~~D-~IIV~~H~g~tsE---k~ala~~ldg~VdvIvGtHTH 176 (255)
T cd07382 108 KIAVINLMGRVFMPPLDNPFRAADELLE-----ELKE--EAD-IIFVDFHAEATSE---KIALGWYLDGRVSAVVGTHTH 176 (255)
T ss_pred EEEEEEEecccCCCcCCCHHHHHHHHHH-----HHhc--CCC-EEEEEECCCCCHH---HHHHHHhCCCCceEEEeCCCC
Confidence 88887753 11 2211 112221 1222 234 8999999964310 111112334569999999999
Q ss_pred Ccccc
Q psy11941 253 ECRIK 257 (313)
Q Consensus 253 ~~~~~ 257 (313)
.....
T Consensus 177 v~t~d 181 (255)
T cd07382 177 VQTAD 181 (255)
T ss_pred ccCCc
Confidence 98754
No 95
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=98.14 E-value=3.5e-06 Score=74.51 Aligned_cols=49 Identities=24% Similarity=0.261 Sum_probs=38.0
Q ss_pred eEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHH-hcCCCEEEEcCCcCCCCCCCHHHH
Q psy11941 21 TIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQAL-DQEVDMVLLGGDLFHINKPSPTTL 81 (313)
Q Consensus 21 ~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~-~~~~d~vv~~GDlf~~~~~~~~~~ 81 (313)
.=|++++||+|- .+..|+++++.+. ..++|.++++||+.+.+..+.+.+
T Consensus 14 ~~ri~visDiHg------------~~~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~~~~l 63 (218)
T PRK09968 14 YRHIWVVGDIHG------------EYQLLQSRLHQLSFCPETDLLISVGDNIDRGPESLNVL 63 (218)
T ss_pred CCeEEEEEeccC------------CHHHHHHHHHhcCCCCCCCEEEECCCCcCCCcCHHHHH
Confidence 348999999993 3456888888876 468999999999999986654433
No 96
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=98.13 E-value=5e-06 Score=75.22 Aligned_cols=66 Identities=26% Similarity=0.242 Sum_probs=49.2
Q ss_pred EEeeccccCcccCCcCccchhHHHHHHHHHHHHh-cCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeeeec
Q psy11941 25 MIASDIHLGYLETDRERGNDSFVSFEEILEQALD-QEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDVI 103 (313)
Q Consensus 25 lh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~-~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 103 (313)
..+||+|-. +..|+++++.+.. .+.|.++++||+++.+..+.+++ +.+.++
T Consensus 2 yvIGDIHG~------------~~~L~~LL~~i~~~~~~D~Li~lGDlVdRGp~s~evl----~~l~~l------------ 53 (257)
T cd07422 2 YAIGDIQGC------------YDELQRLLEKINFDPAKDRLWLVGDLVNRGPDSLETL----RFVKSL------------ 53 (257)
T ss_pred EEEECCCCC------------HHHHHHHHHhcCCCCCCCEEEEecCcCCCCcCHHHHH----HHHHhc------------
Confidence 679999943 3468899988764 47899999999999987654443 355532
Q ss_pred cCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCC
Q psy11941 104 SDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~ 139 (313)
+..+++|.||||...
T Consensus 54 ---------------------~~~v~~VlGNHD~~l 68 (257)
T cd07422 54 ---------------------GDSAKTVLGNHDLHL 68 (257)
T ss_pred ---------------------CCCeEEEcCCchHHH
Confidence 247889999999753
No 97
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=98.11 E-value=6.4e-06 Score=73.05 Aligned_cols=51 Identities=20% Similarity=0.094 Sum_probs=38.0
Q ss_pred EEeeccccCcccCCcCccchhHHHHHHHHHHHHhc--------CCCEEEEcCCcCCCCCCCHHHHHHHHHH
Q psy11941 25 MIASDIHLGYLETDRERGNDSFVSFEEILEQALDQ--------EVDMVLLGGDLFHINKPSPTTLKKCLET 87 (313)
Q Consensus 25 lh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~--------~~d~vv~~GDlf~~~~~~~~~~~~~~~~ 87 (313)
..+||+|- .+..|+++++.+... ..|.+|++||+.|.+..|.+.++.+++.
T Consensus 2 ~vIGDIHG------------~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~vl~~l~~l 60 (222)
T cd07413 2 DFIGDIHG------------HAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSM 60 (222)
T ss_pred EEEEeccC------------CHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHHHHHHHHHHh
Confidence 57999993 345688888876432 4689999999999998777766655443
No 98
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=98.08 E-value=6.6e-06 Score=74.87 Aligned_cols=49 Identities=24% Similarity=0.377 Sum_probs=39.0
Q ss_pred EEEEEeeccccCcccCCcCccchhHHHHHHHHHHHH-hcCCCEEEEcCCcCCCCCCCHHHHH
Q psy11941 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQAL-DQEVDMVLLGGDLFHINKPSPTTLK 82 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~-~~~~d~vv~~GDlf~~~~~~~~~~~ 82 (313)
|++..+||+|- .+..|+++++.+. +.+.|.++++||+.+.+..|.++++
T Consensus 1 m~~YvIGDIHG------------c~daL~~LL~~i~f~~~~D~l~~lGDlVdRGP~slevL~ 50 (279)
T TIGR00668 1 MATYLIGDLHG------------CYDELQALLERVEFDPGQDTLWLTGDLVARGPGSLEVLR 50 (279)
T ss_pred CcEEEEEcccC------------CHHHHHHHHHHhCcCCCCCEEEEeCCccCCCCCHHHHHH
Confidence 57899999994 3456889999886 4578999999999999876655554
No 99
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=98.04 E-value=1.6e-05 Score=72.67 Aligned_cols=52 Identities=12% Similarity=0.142 Sum_probs=36.6
Q ss_pred EEEEeeccccCcccCCcCccchhHHHHHHHHHHHHh------cCCCEEEEcCCcCCCCCCCHHHHHHHHH
Q psy11941 23 RIMIASDIHLGYLETDRERGNDSFVSFEEILEQALD------QEVDMVLLGGDLFHINKPSPTTLKKCLE 86 (313)
Q Consensus 23 kilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~------~~~d~vv~~GDlf~~~~~~~~~~~~~~~ 86 (313)
+++.+||+|-.. ..|+++++.+.+ ...+.+|++||+.|.+..+.+.+..+.+
T Consensus 3 ~iyaIGDIHG~~------------d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~eVld~L~~ 60 (304)
T cd07421 3 VVICVGDIHGYI------------SKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLIS 60 (304)
T ss_pred eEEEEEeccCCH------------HHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHHHHHHHHH
Confidence 689999999433 356666665442 2467899999999999776665554444
No 100
>KOG3662|consensus
Probab=97.95 E-value=5.1e-05 Score=72.08 Aligned_cols=94 Identities=24% Similarity=0.308 Sum_probs=60.5
Q ss_pred CCCeEEEEEeeccccCcccCCc-------CccchhHHHHHHHHHHHHh-cCCCEEEEcCCcCCCCC-CCHHHHHHHHHHH
Q psy11941 18 DRNTIRIMIASDIHLGYLETDR-------ERGNDSFVSFEEILEQALD-QEVDMVLLGGDLFHINK-PSPTTLKKCLETL 88 (313)
Q Consensus 18 ~~~~mkilh~SD~Hlg~~~~~~-------~~~~~~~~~l~~ii~~~~~-~~~d~vv~~GDlf~~~~-~~~~~~~~~~~~l 88 (313)
+.+..|++.++|.|+--....+ ....|. -+++..+.+.. .+||.+++.|||||.+. ...++.+.-.+-|
T Consensus 45 ~~n~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~--~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~~eEf~~~~~Rf 122 (410)
T KOG3662|consen 45 NENSTKILLVADPQILGNWPKKFLVSWLDKYGNDW--YLRRSFDMSQWRLKPDVVFFLGDLFDEGQWAGDEEFKKRYERF 122 (410)
T ss_pred CCCceEEEEecCchhcCCCCCccccchHHhhhhHH--HHHHHHHHHHhccCCCEEEEeccccccCccCChHHHHHHHHHH
Confidence 3678999999999974321111 112232 35666666654 58999999999999653 3344444444445
Q ss_pred HHhccCCCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCC
Q psy11941 89 RKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGP 141 (313)
Q Consensus 89 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~ 141 (313)
+++... ...++++.+|||||.-...
T Consensus 123 kkIf~~----------------------------k~~~~~~~i~GNhDIGf~~ 147 (410)
T KOG3662|consen 123 KKIFGR----------------------------KGNIKVIYIAGNHDIGFGN 147 (410)
T ss_pred HHhhCC----------------------------CCCCeeEEeCCcccccccc
Confidence 543210 2468999999999997754
No 101
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=97.77 E-value=7.9e-05 Score=68.06 Aligned_cols=73 Identities=15% Similarity=0.147 Sum_probs=54.4
Q ss_pred EEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeee
Q psy11941 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFID 101 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 101 (313)
.++.++||+|-.. ..|.++++.+.....+.+++.||++|.+..+.+.+..+... +.
T Consensus 28 ~~i~vvGDiHG~~------------~~l~~ll~~~~~~~~~~~vfLGD~VDrG~~s~e~l~~l~~l-k~----------- 83 (271)
T smart00156 28 APVTVCGDIHGQF------------DDLLRLFDLNGPPPDTNYVFLGDYVDRGPFSIEVILLLFAL-KI----------- 83 (271)
T ss_pred CCEEEEEeCcCCH------------HHHHHHHHHcCCCCCceEEEeCCccCCCCChHHHHHHHHHH-Hh-----------
Confidence 5799999999433 45777777776677889999999999998876666654432 21
Q ss_pred eccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCC
Q psy11941 102 VISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~ 139 (313)
..+-.++++.||||...
T Consensus 84 ---------------------~~p~~v~llrGNHE~~~ 100 (271)
T smart00156 84 ---------------------LYPNRVVLLRGNHESRS 100 (271)
T ss_pred ---------------------cCCCCEEEEeccccHHH
Confidence 12346999999999964
No 102
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=97.60 E-value=0.00073 Score=60.40 Aligned_cols=124 Identities=25% Similarity=0.296 Sum_probs=70.1
Q ss_pred CCCcEEEEcCCCCCCCCCCcC-chHHHHhhCCCeeEecccccCCceeeecEEEeeCCeEEEEEecCCCch----------
Q psy11941 124 ISLPVFTINGNHDDPSGPELV-AALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVKD---------- 192 (313)
Q Consensus 124 ~~~pv~~I~GNHD~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~gl~~~~~---------- 192 (313)
.+..++.+.+||++..+...+ ..++.+...++. ..+.....+. ...+.+++.++.++.++|+.....
T Consensus 76 ~G~d~~tlaNNH~fD~G~~gl~~t~~~l~~~~i~-~~g~~~~~~~-~~~~~i~~~~g~kVg~ig~t~~~~~~~~~~~~~~ 153 (239)
T cd07381 76 AGFDVVSLANNHTLDYGEEGLLDTLDALDEAGIA-HAGAGRNLEE-ARRPAILEVNGIKVAFLAYTYGTNGIPLAAGARP 153 (239)
T ss_pred hCCCEEEcccccccccchHHHHHHHHHHHHcCCc-eeECCCCHHH-hcCcEEEEECCEEEEEEEEECCCCCCcCcccCCc
Confidence 467888887799998864432 234555555544 2332211111 123566777888999988643211
Q ss_pred --------HHHHHHhhhcchhccCCCCCCCcceEEEeeccccCCCCcC----ccccccCCCcccEEEeCCccCcccc
Q psy11941 193 --------ERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTVK----NIAEDSIPSFFHFILWGHEHECRIK 257 (313)
Q Consensus 193 --------~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~~~----~~~~~~~~~~~d~v~~GH~H~~~~~ 257 (313)
+.+... ++.++. ..+ +.|+++|.+........ .+-..+...++|+|+.||.|..|.+
T Consensus 154 ~~~~~~~~~~~~~~-----i~~lr~--~~D-~vIv~~H~G~e~~~~p~~~~~~la~~l~~~G~D~IiG~H~Hv~q~~ 222 (239)
T cd07381 154 GGVNPLDLERIAAD-----IAEAKK--KAD-IVIVSLHWGVEYSYYPTPEQRELARALIDAGADLVIGHHPHVLQGI 222 (239)
T ss_pred cccCccCHHHHHHH-----HHHHhh--cCC-EEEEEecCcccCCCCCCHHHHHHHHHHHHCCCCEEEcCCCCcCCCe
Confidence 111111 222222 245 99999999764321101 1112334568999999999998865
No 103
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=97.57 E-value=0.00022 Score=66.22 Aligned_cols=71 Identities=17% Similarity=0.155 Sum_probs=52.9
Q ss_pred EEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeeee
Q psy11941 23 RIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDV 102 (313)
Q Consensus 23 kilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 102 (313)
++.+++|+|-.. ..|.++++.+.....+.+++.||++|.+..+.+++..+....-
T Consensus 44 ~i~ViGDIHG~~------------~dL~~l~~~~g~~~~~~ylFLGDyVDRG~~s~Evi~lL~~lki------------- 98 (305)
T cd07416 44 PVTVCGDIHGQF------------YDLLKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKI------------- 98 (305)
T ss_pred CEEEEEeCCCCH------------HHHHHHHHhcCCCCCceEEEECCccCCCCChHHHHHHHHHHHh-------------
Confidence 689999999433 3567777777666779999999999999887776665543211
Q ss_pred ccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCC
Q psy11941 103 ISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDP 138 (313)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~ 138 (313)
.....++++.||||..
T Consensus 99 --------------------~~p~~v~lLRGNHE~~ 114 (305)
T cd07416 99 --------------------LYPKTLFLLRGNHECR 114 (305)
T ss_pred --------------------hcCCCEEEEeCCCcHH
Confidence 1234699999999985
No 104
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=97.46 E-value=0.0038 Score=56.77 Aligned_cols=184 Identities=21% Similarity=0.220 Sum_probs=99.9
Q ss_pred EEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHh-cCCCEEEEcCCcCCCCC-CCHHHHHHHHHHHHHhccCCCcee
Q psy11941 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALD-QEVDMVLLGGDLFHINK-PSPTTLKKCLETLRKYCIGDRSVF 99 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~-~~~d~vv~~GDlf~~~~-~~~~~~~~~~~~l~~l~~~~~~~~ 99 (313)
||||+++|+= |. .....+...+..+++ .++|++|..||.+..+. .+ ....+.|.
T Consensus 1 m~ilfiGDi~-G~---------~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~----~~~~~~L~---------- 56 (266)
T TIGR00282 1 IKFLFIGDVY-GK---------AGRKIVKNNLPQLKSKYQADLVIANGENTTHGKGLT----LKIYEFLK---------- 56 (266)
T ss_pred CeEEEEEecC-CH---------HHHHHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCC----HHHHHHHH----------
Confidence 7999999996 22 234467777777775 57899999999997652 22 33334554
Q ss_pred eeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCC-CeeEeccc--ccCCceeeecEEEe
Q psy11941 100 IDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSG-LVNYFGKC--TNLNEITLNPLIIQ 176 (313)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~-~~~~~~~~--~~~~~~~~~~~~l~ 176 (313)
+.++.++.+ |||.+..+. .+..+.... .+..+.-. .+-.. +..+.
T Consensus 57 -----------------------~~GvDviT~-GNH~~Dkge----~~~~i~~~~~~lrpanyp~~~pG~g----~~i~~ 104 (266)
T TIGR00282 57 -----------------------QSGVNYITM-GNHTWFQKL----ILDVVINQKDLVRPLNFDTSFAGKG----SLVFE 104 (266)
T ss_pred -----------------------hcCCCEEEc-cchhccCcH----HHHHHhccccccccCCCCCCCCCCC----cEEEE
Confidence 467888888 999998752 222222211 11100000 01011 13445
Q ss_pred eCCeEEEEEecC---CCc------hHH-HHHHhhhcchhccCCCCCCCcceEEEeeccccCCCCcCccccccCCCcccEE
Q psy11941 177 KNETKVAIFGLG---YVK------DER-LCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTVKNIAEDSIPSFFHFI 246 (313)
Q Consensus 177 ~~~~~~~i~gl~---~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~~~~~~~~~~~~~~d~v 246 (313)
.++.++.|..+. +.. +.+ ..+. ++.++. ..+ +.|+.+|..-... +......++.++|+|
T Consensus 105 ~nG~kiaVinl~G~~fm~~~~~~~Pf~~~d~~-----i~~lk~--~~d-~IIVd~HaeatsE---K~a~~~~ldg~vsaV 173 (266)
T TIGR00282 105 FNGAKIAVTNLQGTSVNLPFKTTNPFKVLKEL-----INMLKK--DCD-LIFVDFHAETTSE---KNAFGMAFDGYVTAV 173 (266)
T ss_pred ECCEEEEEEECCCcccCCccccCCHHHHHHHH-----HHhhhc--CCC-EEEEEeCCCCHHH---HHHHHHHhCCCccEE
Confidence 566677666542 111 111 1111 111121 223 8899999964311 112223456789999
Q ss_pred EeCCccCccccCCCCCCCcccEEecC
Q psy11941 247 LWGHEHECRIKPEYNTKQRFHVCQPG 272 (313)
Q Consensus 247 ~~GH~H~~~~~~~~~~~~~~~i~~~G 272 (313)
+.-|+|-...-.+.-+.+..++.=.|
T Consensus 174 vGtHtHV~TaD~~il~~gtayitD~G 199 (266)
T TIGR00282 174 VGTHTHVPTADLRILPKGTAYITDVG 199 (266)
T ss_pred EeCCCCCCCCcceeCCCCCEEEecCC
Confidence 99999987754322223444443333
No 105
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=97.43 E-value=0.00039 Score=63.91 Aligned_cols=72 Identities=21% Similarity=0.240 Sum_probs=50.8
Q ss_pred EEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeeee
Q psy11941 23 RIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDV 102 (313)
Q Consensus 23 kilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 102 (313)
++.+++|+|-.. ..|.++++.+.....+.+++.||++|.+..+.+.+..+. .|+-
T Consensus 43 ~i~vvGDIHG~~------------~dL~~ll~~~~~~~~~~~lfLGDyVDRG~~s~evl~ll~-~lk~------------ 97 (285)
T cd07415 43 PVTVCGDIHGQF------------YDLLELFRVGGDPPDTNYLFLGDYVDRGYYSVETFLLLL-ALKV------------ 97 (285)
T ss_pred CEEEEEeCCCCH------------HHHHHHHHHcCCCCCCeEEEEeEECCCCcCHHHHHHHHH-HHhh------------
Confidence 589999999433 346677776655566789999999999987666555443 2221
Q ss_pred ccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCC
Q psy11941 103 ISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~ 139 (313)
.....++++.||||...
T Consensus 98 --------------------~~p~~v~llrGNHE~~~ 114 (285)
T cd07415 98 --------------------RYPDRITLLRGNHESRQ 114 (285)
T ss_pred --------------------cCCCcEEEEecccchHh
Confidence 12347999999999854
No 106
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=97.41 E-value=0.00057 Score=63.77 Aligned_cols=73 Identities=19% Similarity=0.136 Sum_probs=51.2
Q ss_pred EEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhc-CCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceee
Q psy11941 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQ-EVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFI 100 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~-~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 100 (313)
.++.+++|+|-.. ..|.++++..... .-+.+++.||+.|.+..+.+++..++..--
T Consensus 51 ~~~~vvGDiHG~~------------~dL~~il~~~g~~~~~~~~lFLGDyVDRG~~s~Evl~ll~~lk~----------- 107 (321)
T cd07420 51 KQVTICGDLHGKL------------DDLFLIFYKNGLPSPENPYVFNGDFVDRGKRSIEILIILFAFFL----------- 107 (321)
T ss_pred CCeEEEEeCCCCH------------HHHHHHHHHcCCCCccceEEEeccccCCCCCcHHHHHHHHHHhh-----------
Confidence 4689999999433 3466666655432 236799999999999888777665544321
Q ss_pred eeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCC
Q psy11941 101 DVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~ 139 (313)
..+-.++++.|||+...
T Consensus 108 ----------------------~~p~~v~llRGNHE~~~ 124 (321)
T cd07420 108 ----------------------VYPNEVHLNRGNHEDHI 124 (321)
T ss_pred ----------------------cCCCcEEEecCchhhhh
Confidence 12346999999999876
No 107
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=97.39 E-value=0.00043 Score=63.92 Aligned_cols=72 Identities=25% Similarity=0.262 Sum_probs=52.1
Q ss_pred EEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeeee
Q psy11941 23 RIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDV 102 (313)
Q Consensus 23 kilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 102 (313)
++..++|+|-.. ..|.++++.......+.+|+.||++|.+..+.+.+..+.. ++-
T Consensus 51 ~i~viGDIHG~~------------~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s~e~i~ll~~-lk~------------ 105 (293)
T cd07414 51 PLKICGDIHGQY------------YDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLA-YKI------------ 105 (293)
T ss_pred ceEEEEecCCCH------------HHHHHHHHhcCCCCcceEEEEeeEecCCCCcHHHHHHHHH-hhh------------
Confidence 589999999333 3566777776666678899999999999887766655442 221
Q ss_pred ccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCC
Q psy11941 103 ISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~ 139 (313)
..+-.++++.||||...
T Consensus 106 --------------------~~p~~i~llrGNHE~~~ 122 (293)
T cd07414 106 --------------------KYPENFFLLRGNHECAS 122 (293)
T ss_pred --------------------hCCCcEEEEecccchhh
Confidence 12346999999999964
No 108
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=97.38 E-value=0.0022 Score=57.33 Aligned_cols=127 Identities=19% Similarity=0.272 Sum_probs=71.1
Q ss_pred CCCcEEEEcCCCCCCCCCCcC-chHHHHhhCCCeeEecccccCCceeeecEEEeeCCeEEEEEecCCCchH---------
Q psy11941 124 ISLPVFTINGNHDDPSGPELV-AALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVKDE--------- 193 (313)
Q Consensus 124 ~~~pv~~I~GNHD~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~gl~~~~~~--------- 193 (313)
.+..++.+.+||++..+...+ ..++.+...++. +.+.....+. ...+.+++.++.++.++|+.+....
T Consensus 72 ~G~d~~~laNNH~fD~G~~gl~~t~~~l~~a~i~-~~g~~~~~~~-~~~~~i~~~~g~kIg~ig~t~~~~~~~~~~~~~~ 149 (239)
T smart00854 72 AGFDVVSLANNHSLDYGEEGLLDTLAALDAAGIA-HVGAGRNLAE-ARKPAIVEVKGIKIALLAYTYGTNNGWAASKDRP 149 (239)
T ss_pred hCCCEEEeccCcccccchHHHHHHHHHHHHCCCC-EeeCCCChHH-hhCcEEEEECCEEEEEEEEEcCCCCCcccCCCCC
Confidence 467888887799998865432 244555555554 3332222111 1235677778889988886432110
Q ss_pred --------HHHHHhhhcchhccCCCCCCCcceEEEeeccccCCCC-cC---ccccccCCCcccEEEeCCccCcccc
Q psy11941 194 --------RLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGT-VK---NIAEDSIPSFFHFILWGHEHECRIK 257 (313)
Q Consensus 194 --------~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~-~~---~~~~~~~~~~~d~v~~GH~H~~~~~ 257 (313)
....+. ..++.++. ..+ +.|+++|.+...... .. .+-..++..++|+|+.||.|..+..
T Consensus 150 g~~~~~~~~~~~i~--~~i~~lr~--~~D-~vIv~~H~G~e~~~~p~~~~~~~A~~l~~~G~DvIiG~H~H~~~~~ 220 (239)
T smart00854 150 GVALLPDLDREKIL--ADIARARK--KAD-VVIVSLHWGVEYQYEPTDEQRELAHALIDAGADVVIGHHPHVLQPI 220 (239)
T ss_pred CeeecCcCCHHHHH--HHHHHHhc--cCC-EEEEEecCccccCCCCCHHHHHHHHHHHHcCCCEEEcCCCCcCCce
Confidence 011111 11222232 344 899999998653211 01 1112334568999999999998865
No 109
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=97.38 E-value=0.0015 Score=58.90 Aligned_cols=129 Identities=21% Similarity=0.300 Sum_probs=76.2
Q ss_pred CCCCcEEEEcCCCCCCCCCCc-CchHHHHhhCCCeeEecccccCCceeeecEEEeeCCeEEEEEecCCCchH--------
Q psy11941 123 NISLPVFTINGNHDDPSGPEL-VAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVKDE-------- 193 (313)
Q Consensus 123 ~~~~pv~~I~GNHD~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~gl~~~~~~-------- 193 (313)
..+..++.+..||-+..+... ...++.|...++. ..|.....+ -...|.+++.++.++.+++..+....
T Consensus 73 ~~G~d~vslANNH~~D~G~~gl~~Tl~~L~~~gi~-~~Gag~~~~-~a~~p~i~~~~g~kia~l~~t~~~~~~~~~~~~~ 150 (250)
T PF09587_consen 73 DAGFDVVSLANNHIFDYGEEGLLDTLEALDKAGIP-YVGAGRNLE-EARRPAIIEVNGVKIAFLGYTDGENGYSSANGNR 150 (250)
T ss_pred HcCCCEEEecCCCCccccHHHHHHHHHHHHHCCCc-EeECcCChH-HhcCeEEEEECCEEEEEEEEEcCCCCCccccccc
Confidence 357889999999988765332 2356777777754 445222211 12346788888889988886432210
Q ss_pred ------------------HHHHHhhhcchhccCCCCCCCcceEEEeeccccCCC-Cc---CccccccCCCcccEEEeCCc
Q psy11941 194 ------------------RLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERG-TV---KNIAEDSIPSFFHFILWGHE 251 (313)
Q Consensus 194 ------------------~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~-~~---~~~~~~~~~~~~d~v~~GH~ 251 (313)
....+... ++.++ ...+ +.|+.+|....... +. ..+-..++..++|+|+.+|-
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~i~~~--i~~~r--~~~D-~vIv~~HwG~e~~~~p~~~q~~~a~~lidaGaDiIiG~Hp 225 (250)
T PF09587_consen 151 PYGFSYRPDKAGLNPNRPGIERIKED--IREAR--KKAD-VVIVSLHWGIEYENYPTPEQRELARALIDAGADIIIGHHP 225 (250)
T ss_pred cccccccccccccccccchHHHHHHH--HHHHh--cCCC-EEEEEeccCCCCCCCCCHHHHHHHHHHHHcCCCEEEeCCC
Confidence 00111111 22222 2334 99999999754221 11 11223455689999999999
Q ss_pred cCccccC
Q psy11941 252 HECRIKP 258 (313)
Q Consensus 252 H~~~~~~ 258 (313)
|..|.+.
T Consensus 226 Hv~q~~E 232 (250)
T PF09587_consen 226 HVIQPVE 232 (250)
T ss_pred CcccceE
Confidence 9999764
No 110
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=97.36 E-value=0.00042 Score=64.61 Aligned_cols=72 Identities=24% Similarity=0.271 Sum_probs=51.1
Q ss_pred EEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeeee
Q psy11941 23 RIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDV 102 (313)
Q Consensus 23 kilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 102 (313)
++..++|+|-.. ..|.++++.+.....+.+|+.||++|.+..+.+.+..+.. ++-
T Consensus 60 ~i~vvGDIHG~~------------~dL~~l~~~~g~~~~~~ylfLGDyVDRG~~s~evl~ll~~-lki------------ 114 (320)
T PTZ00480 60 PLKICGDVHGQY------------FDLLRLFEYGGYPPESNYLFLGDYVDRGKQSLETICLLLA-YKI------------ 114 (320)
T ss_pred CeEEEeecccCH------------HHHHHHHHhcCCCCcceEEEeceecCCCCCcHHHHHHHHH-hcc------------
Confidence 589999999333 3466777766655667899999999999877666554432 110
Q ss_pred ccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCC
Q psy11941 103 ISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~ 139 (313)
..+..++++.||||...
T Consensus 115 --------------------~~p~~v~llRGNHE~~~ 131 (320)
T PTZ00480 115 --------------------KYPENFFLLRGNHECAS 131 (320)
T ss_pred --------------------cCCCceEEEecccchhh
Confidence 12346999999999864
No 111
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=97.28 E-value=0.0007 Score=62.73 Aligned_cols=72 Identities=17% Similarity=0.241 Sum_probs=50.9
Q ss_pred EEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeeee
Q psy11941 23 RIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDV 102 (313)
Q Consensus 23 kilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 102 (313)
++.+++|+|-.. ..|.++++.+.....+.+++.||++|.+..+.+.+..+... +-
T Consensus 44 ~i~vvGDIHG~~------------~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s~evl~ll~~l-k~------------ 98 (303)
T PTZ00239 44 PVNVCGDIHGQF------------YDLQALFKEGGDIPNANYIFIGDFVDRGYNSVETMEYLLCL-KV------------ 98 (303)
T ss_pred CEEEEEeCCCCH------------HHHHHHHHhcCCCCCceEEEeeeEcCCCCCHHHHHHHHHHh-hh------------
Confidence 488999999433 34667776665556778999999999998776666554322 10
Q ss_pred ccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCC
Q psy11941 103 ISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~ 139 (313)
.....++++.||||...
T Consensus 99 --------------------~~p~~v~llrGNHE~~~ 115 (303)
T PTZ00239 99 --------------------KYPGNITLLRGNHESRQ 115 (303)
T ss_pred --------------------cCCCcEEEEecccchHH
Confidence 12346999999999854
No 112
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=97.22 E-value=0.00088 Score=63.65 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=49.5
Q ss_pred EEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCC-CEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeee
Q psy11941 23 RIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEV-DMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFID 101 (313)
Q Consensus 23 kilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~-d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 101 (313)
++.+++|+|-. +..|.++++.+.-... +.+|+.||+.|.+..+.+.+..+.. |+ +
T Consensus 67 ~i~VvGDIHG~------------~~dL~~ll~~~g~~~~~~~ylFLGDyVDRGp~SlEvl~lL~~-lk-i---------- 122 (377)
T cd07418 67 EVVVVGDVHGQ------------LHDVLFLLEDAGFPDQNRFYVFNGDYVDRGAWGLETFLLLLS-WK-V---------- 122 (377)
T ss_pred CEEEEEecCCC------------HHHHHHHHHHhCCCCCCceEEEeccccCCCCChHHHHHHHHH-Hh-h----------
Confidence 57999999933 3456677766543333 4589999999999887666654442 22 0
Q ss_pred eccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCC
Q psy11941 102 VISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~ 139 (313)
...-.|+++.||||...
T Consensus 123 ---------------------~~p~~v~lLRGNHE~~~ 139 (377)
T cd07418 123 ---------------------LLPDRVYLLRGNHESKF 139 (377)
T ss_pred ---------------------ccCCeEEEEeeeccccc
Confidence 12346999999999865
No 113
>KOG3325|consensus
Probab=97.22 E-value=0.00055 Score=55.86 Aligned_cols=81 Identities=15% Similarity=0.138 Sum_probs=52.7
Q ss_pred CcceEEEeecccc-CCCCcCccccccCCCcccEEEeCCccCccccCCCCCCCcccEEecCCC-ceeccccCccccccEEE
Q psy11941 214 DIIYILVLHQNRP-ERGTVKNIAEDSIPSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSP-VATSLCAGEAVQKKCGI 291 (313)
Q Consensus 214 ~~~~Ilv~H~~~~-~~~~~~~~~~~~~~~~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS~-~~~~~~e~~~~~~g~~v 291 (313)
+.++|.++|+... +.|..+.+......-.+|+.++||+|+..... .++.-+++|||. ...+..+.+.-.++|.+
T Consensus 78 GqfkIG~chGhqViP~gd~~sL~~LaRqldvDILl~G~Th~f~Aye----~eg~ffvnPGSaTGAfn~~~t~~~~PSFvL 153 (183)
T KOG3325|consen 78 GQFKIGLCHGHQVIPWGDPESLALLARQLDVDILLTGHTHKFEAYE----HEGKFFVNPGSATGAFNVSDTDIIVPSFVL 153 (183)
T ss_pred ccEEEEeecCcEeecCCCHHHHHHHHHhcCCcEEEeCCceeEEEEE----eCCcEEeCCCcccCCCcccccCCCCCceEE
Confidence 4589999998632 33332222111112468999999999988764 255668899994 44455554435678999
Q ss_pred EEEeCCc
Q psy11941 292 LMCNKQN 298 (313)
Q Consensus 292 v~~~~~~ 298 (313)
+++++..
T Consensus 154 mDiqg~~ 160 (183)
T KOG3325|consen 154 MDIQGST 160 (183)
T ss_pred EEecCCE
Confidence 9988653
No 114
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=97.15 E-value=0.0014 Score=61.05 Aligned_cols=72 Identities=22% Similarity=0.222 Sum_probs=47.9
Q ss_pred EEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcC--------CCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccC
Q psy11941 23 RIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQE--------VDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIG 94 (313)
Q Consensus 23 kilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~--------~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~ 94 (313)
.+..++|+|-.. ..|.++++.+.... -.-+|+.||++|.+..+.+.+..+... +-
T Consensus 49 ~~~viGDIHG~~------------~~L~~ll~~~g~~~~~~~~~~~~~~~vfLGDyVDRGp~s~evl~ll~~l-k~---- 111 (311)
T cd07419 49 PIKIFGDIHGQF------------GDLMRLFDEYGSPVTEAAGDIEYIDYLFLGDYVDRGSNSLETICLLLAL-KV---- 111 (311)
T ss_pred CEEEEEeccCCH------------HHHHHHHHHcCCCcccccCCCcCceEEEECCccCCCCChHHHHHHHHHh-hh----
Confidence 478899999333 34666666543211 124789999999998877766655432 21
Q ss_pred CCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCC
Q psy11941 95 DRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~ 139 (313)
..+-.++++.||||...
T Consensus 112 ----------------------------~~p~~v~lLRGNHE~~~ 128 (311)
T cd07419 112 ----------------------------KYPNQIHLIRGNHEDRD 128 (311)
T ss_pred ----------------------------cCCCcEEEeccccchHH
Confidence 22457999999999854
No 115
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=97.13 E-value=0.00033 Score=61.23 Aligned_cols=45 Identities=20% Similarity=0.244 Sum_probs=33.8
Q ss_pred EEEeeccccCcccCCcCccchhHHHHHHHHHHHH-hcCCCEEEEcCCcCCCCC
Q psy11941 24 IMIASDIHLGYLETDRERGNDSFVSFEEILEQAL-DQEVDMVLLGGDLFHINK 75 (313)
Q Consensus 24 ilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~-~~~~d~vv~~GDlf~~~~ 75 (313)
|+.+||+|++... ..+..|+++++.+. +..++.+|++|++.+...
T Consensus 1 Iv~~Sg~~~~~~~-------~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~ 46 (209)
T PF04042_consen 1 IVFASGPFLDSDN-------LSLEPLRDLLSGVEDASKPDVLILMGPFIDSPH 46 (209)
T ss_dssp EEEEES--CTTT--------HHHHHHHHHHHCCCHCTTECEEEEES-SCBTTS
T ss_pred CEEEecCccCCCH-------hHHHHHHHHHHhccccCCCcEEEEeCCCcCccc
Confidence 6899999998532 34677888888888 889999999999998744
No 116
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=97.13 E-value=0.0016 Score=60.76 Aligned_cols=53 Identities=19% Similarity=0.210 Sum_probs=37.8
Q ss_pred eEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhc-CCCEEEEcCCcCCCCCCCHHHHHHHH
Q psy11941 21 TIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQ-EVDMVLLGGDLFHINKPSPTTLKKCL 85 (313)
Q Consensus 21 ~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~-~~d~vv~~GDlf~~~~~~~~~~~~~~ 85 (313)
..++.+++|+|-.. ..|.++++...-. .-|.+++.||++|.+..+.+.+..++
T Consensus 59 ~~~~~VvGDIHG~~------------~dL~~ll~~~g~~~~~~~ylFLGDyVDRG~~S~Evl~ll~ 112 (316)
T cd07417 59 GEKITVCGDTHGQF------------YDLLNIFELNGLPSETNPYLFNGDFVDRGSFSVEVILTLF 112 (316)
T ss_pred CceeEEeecccCCH------------HHHHHHHHhcCCCCccCeEEEEeeEecCCCChHHHHHHHH
Confidence 45799999999433 3456666655422 23579999999999988877776554
No 117
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=97.07 E-value=0.0011 Score=61.23 Aligned_cols=71 Identities=23% Similarity=0.257 Sum_probs=50.1
Q ss_pred EEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeeeec
Q psy11941 24 IMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDVI 103 (313)
Q Consensus 24 ilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 103 (313)
+.+++|+|-.. ..|.++++.+.....+.+++.||++|.+..+.+.+..+. .++ +
T Consensus 54 ~~ViGDIHG~~------------~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s~evl~ll~-~lk-~------------ 107 (294)
T PTZ00244 54 VRVCGDTHGQY------------YDLLRIFEKCGFPPYSNYLFLGDYVDRGKHSVETITLQF-CYK-I------------ 107 (294)
T ss_pred ceeeccCCCCH------------HHHHHHHHHcCCCCcccEEEeeeEecCCCCHHHHHHHHH-HHh-h------------
Confidence 68899999433 356777777665566678899999999987766655433 222 1
Q ss_pred cCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCC
Q psy11941 104 SDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~ 139 (313)
..+..++++.||||...
T Consensus 108 -------------------~~p~~v~llrGNHE~~~ 124 (294)
T PTZ00244 108 -------------------VYPENFFLLRGNHECAS 124 (294)
T ss_pred -------------------ccCCeEEEEecccchHh
Confidence 12346999999999754
No 118
>KOG3770|consensus
Probab=96.86 E-value=0.004 Score=61.57 Aligned_cols=95 Identities=21% Similarity=0.308 Sum_probs=59.1
Q ss_pred CeEEEEEeeccccCcccC------------------------------CcC-ccchhHHHHHHHHHHHHhc--CCCEEEE
Q psy11941 20 NTIRIMIASDIHLGYLET------------------------------DRE-RGNDSFVSFEEILEQALDQ--EVDMVLL 66 (313)
Q Consensus 20 ~~mkilh~SD~Hlg~~~~------------------------------~~~-~~~~~~~~l~~ii~~~~~~--~~d~vv~ 66 (313)
-..|++|++|+|...... +.. ..+--..+++.+++.+++. ++|+|+.
T Consensus 137 p~~rvlhltDiH~D~~Y~~gs~a~c~~p~ccr~s~~~p~~~~~~Ag~wG~y~~CD~P~~lies~L~~ike~~~~iD~I~w 216 (577)
T KOG3770|consen 137 PTFRVLHLTDIHLDPDYSEGSDADCDCPMCCRNSDGTPSGTKVAAGPWGDYGKCDSPKRLIESALDHIKENHKDIDYIIW 216 (577)
T ss_pred CceeEEEeeccccCcccccCCcccccCccccccCCCCCCCccccCCCCCCcCCCCCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 369999999999976321 000 1233456788888887763 4899999
Q ss_pred cCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCC
Q psy11941 67 GGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 67 ~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~ 139 (313)
+||.-.+- .-..+.+..++.+.++. +.|+. - -.+.|||...||||..-
T Consensus 217 TGD~~~H~-~w~~t~~~~l~~~~~l~--------~~~~e---~-------------FpdvpvypalGNhe~~P 264 (577)
T KOG3770|consen 217 TGDNVAHD-VWAQTEEENLSMLSRLT--------SLLSE---Y-------------FPDVPVYPALGNHEIHP 264 (577)
T ss_pred eCCCCccc-chhhhHHHHHHHHHHHH--------HHHHH---h-------------CCCCceeeecccCCCCc
Confidence 99998764 22233333333333322 01110 0 24789999999999865
No 119
>KOG4419|consensus
Probab=96.69 E-value=0.0096 Score=58.85 Aligned_cols=57 Identities=21% Similarity=0.112 Sum_probs=38.8
Q ss_pred CCCeEEEEEeeccccCcccCCc----C-ccchhHHHHHHHHHHHHhcCCCEEEE-cCCcCCCC
Q psy11941 18 DRNTIRIMIASDIHLGYLETDR----E-RGNDSFVSFEEILEQALDQEVDMVLL-GGDLFHIN 74 (313)
Q Consensus 18 ~~~~mkilh~SD~Hlg~~~~~~----~-~~~~~~~~l~~ii~~~~~~~~d~vv~-~GDlf~~~ 74 (313)
....++++|++|+|-+.....+ . .--+..+.+.++-++|+..++|.+++ +||+-+..
T Consensus 39 ~~~~~nf~hTtdthG~~~~h~~~~~~~~~~G~f~~f~~~~k~~a~~~~~dvl~~dtGD~hdGt 101 (602)
T KOG4419|consen 39 NWGQPNFIHTTDTHGWLGSHLRDARYDADFGDFAAFALRMKELADRKGVDVLLVDTGDLHDGT 101 (602)
T ss_pred ccccccceeeccccccccccccchhhhhhhhhHHHHHHHHHHHHhccCCCEEEEecccccCCc
Confidence 3457899999999977642211 1 11233445566667788899999888 99987764
No 120
>KOG3947|consensus
Probab=96.54 E-value=0.02 Score=51.57 Aligned_cols=71 Identities=23% Similarity=0.217 Sum_probs=47.6
Q ss_pred CCCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCc
Q psy11941 18 DRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRS 97 (313)
Q Consensus 18 ~~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~ 97 (313)
.....|++++||.|--... + + .-..=|.++.+||.+.-+.+ +++..+-+.+..|
T Consensus 58 ~~~~~r~VcisdtH~~~~~---------------i-~--~~p~gDvlihagdfT~~g~~--~ev~~fn~~~gsl------ 111 (305)
T KOG3947|consen 58 GPGYARFVCISDTHELTFD---------------I-N--DIPDGDVLIHAGDFTNLGLP--EEVIKFNEWLGSL------ 111 (305)
T ss_pred CCCceEEEEecCcccccCc---------------c-c--cCCCCceEEeccCCccccCH--HHHHhhhHHhccC------
Confidence 3457899999999932211 0 0 12345888999999987765 6677776666532
Q ss_pred eeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCC
Q psy11941 98 VFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSG 140 (313)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~ 140 (313)
.-.--++|.|||++...
T Consensus 112 --------------------------ph~yKIVIaGNHELtFd 128 (305)
T KOG3947|consen 112 --------------------------PHEYKIVIAGNHELTFD 128 (305)
T ss_pred --------------------------cceeeEEEeeccceeec
Confidence 11246788999998764
No 121
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=96.28 E-value=0.017 Score=56.02 Aligned_cols=110 Identities=18% Similarity=0.244 Sum_probs=65.0
Q ss_pred CCeEEEEEeeccccCcccCC------------------cCccchh--HHHHHHHHHHHHh----cCCCEEEEcCCcCCCC
Q psy11941 19 RNTIRIMIASDIHLGYLETD------------------RERGNDS--FVSFEEILEQALD----QEVDMVLLGGDLFHIN 74 (313)
Q Consensus 19 ~~~mkilh~SD~Hlg~~~~~------------------~~~~~~~--~~~l~~ii~~~~~----~~~d~vv~~GDlf~~~ 74 (313)
..-.+|++++|+|+.-.... ..+-.+. ...|+.+++.++. ...|++|-+||..|+.
T Consensus 34 ~~l~~f~~~tDvHi~D~esP~r~~~l~~~~~~~~~~~s~y~P~~~~t~~v~~AaVqtvNal~~~~p~df~is~GD~~nn~ 113 (492)
T TIGR03768 34 KRLLRFFTISDVHITDKESPNQLIYLQQTEPAAAPNTSIYSPVMLYSTQVLDAAVQTVNDLHKRDRFDFGISLGDACNST 113 (492)
T ss_pred chheeeeeeeeeeeccccCchhhhhhcccccccCCCccccChhHHHHHHHHHHHHHHHHHhhcCCCceEEEeccccccch
Confidence 34578999999999764321 0111222 2356666666553 4779999999999986
Q ss_pred CCCHHHHHHHHHHHHHhccCCCceeeeeccCcccccccCCCccCC----CCCCCCCcEEEEcCCCCCCC
Q psy11941 75 KPSPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMD----PNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 75 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~pv~~I~GNHD~~~ 139 (313)
.. .+++..++.|..=. +-.+--+----+-+.|.. +.+...+|+|.+.||||...
T Consensus 114 ~~--nElrWyidvldG~~---------I~p~SG~~~~~e~v~~~~p~~a~GL~~~iPWY~v~GNHD~~~ 171 (492)
T TIGR03768 114 QY--NELRWYIDVLDGKP---------ITPSSGAHAGADTIDYQKPFQAAGLDKSIPWYQVLGNHDHFW 171 (492)
T ss_pred hH--HHHHHHHHHhcCCe---------eccCCCCCCCccCCCCCCcccccccCCCCceEEeecCCcccc
Confidence 54 57888888876310 111000000001123333 23334489999999999865
No 122
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=95.80 E-value=0.064 Score=49.08 Aligned_cols=92 Identities=16% Similarity=0.146 Sum_probs=58.8
Q ss_pred CCCCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHH-h----cCCCEEEEcCCcCCCC----CCCHHHHHHHHHH
Q psy11941 17 DDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQAL-D----QEVDMVLLGGDLFHIN----KPSPTTLKKCLET 87 (313)
Q Consensus 17 ~~~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~-~----~~~d~vv~~GDlf~~~----~~~~~~~~~~~~~ 87 (313)
+.....+|+++||+||... ..+.+|+++++.-. . .-+-++|+.|++.... ....+.++.-.+.
T Consensus 23 ~~~~~~~~VilSDV~LD~p--------~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~ 94 (291)
T PTZ00235 23 KNDKRHNWIIMHDVYLDSP--------YTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFDYNRNFHKVYIKGFEK 94 (291)
T ss_pred cCCCceEEEEEEeeccCCH--------HHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCcccCCCCchHHHHHHHHH
Confidence 5666788899999999874 45667788877653 2 2378899999998764 2222334444444
Q ss_pred HHHhccCCCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCC
Q psy11941 88 LRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 88 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~ 139 (313)
|..+ +++ .=|.+.....+++|||-.|...
T Consensus 95 La~l----------lls-------------~fp~L~~~s~fVFVPGpnDPw~ 123 (291)
T PTZ00235 95 LSVM----------LIS-------------KFKLILEHCYLIFIPGINDPCA 123 (291)
T ss_pred HHHH----------HHH-------------hChHHHhcCeEEEECCCCCCCc
Confidence 4321 000 0023344568999999999865
No 123
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=95.17 E-value=0.071 Score=44.28 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=15.6
Q ss_pred hcCCCEEEEcCCcCCCCCC
Q psy11941 58 DQEVDMVLLGGDLFHINKP 76 (313)
Q Consensus 58 ~~~~d~vv~~GDlf~~~~~ 76 (313)
+...|++|+.||+|.....
T Consensus 24 ~gpFd~~ic~Gdff~~~~~ 42 (150)
T cd07380 24 KGPFDALLCVGDFFGDDED 42 (150)
T ss_pred cCCeeEEEEecCccCCccc
Confidence 4578999999999987654
No 124
>KOG0372|consensus
Probab=93.68 E-value=0.18 Score=44.82 Aligned_cols=71 Identities=23% Similarity=0.250 Sum_probs=45.5
Q ss_pred EEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeeeec
Q psy11941 24 IMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDVI 103 (313)
Q Consensus 24 ilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 103 (313)
+.+++|+|--. ..+-++.+....-.-.--++.||+.|.+..|-+++-.++ .|+.
T Consensus 45 vtvcGDIHGQf------------~Dllelf~igG~~~~t~YLFLGDyVDRG~~SvEt~lLLl-~lK~------------- 98 (303)
T KOG0372|consen 45 VTVCGDIHGQF------------YDLLELFRIGGDVPETNYLFLGDYVDRGYYSVETFLLLL-ALKV------------- 98 (303)
T ss_pred cEEeecccchH------------HHHHHHHHhCCCCCCCceEeecchhccccchHHHHHHHH-HHhh-------------
Confidence 57899999322 223344444333333447899999999988766654332 2221
Q ss_pred cCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCC
Q psy11941 104 SDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~ 139 (313)
..+-.|..|.|||+.+.
T Consensus 99 -------------------rYP~ritLiRGNHEsRq 115 (303)
T KOG0372|consen 99 -------------------RYPDRITLIRGNHESRQ 115 (303)
T ss_pred -------------------cCcceeEEeeccchhhh
Confidence 23457999999999876
No 125
>KOG0373|consensus
Probab=93.51 E-value=0.26 Score=43.15 Aligned_cols=71 Identities=18% Similarity=0.212 Sum_probs=47.9
Q ss_pred EEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeeeec
Q psy11941 24 IMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDVI 103 (313)
Q Consensus 24 ilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 103 (313)
+-+++|+|-- +-.|-++......------|+.||+.|.+..|-++...++-...
T Consensus 48 VTvCGDIHGQ------------FyDL~eLFrtgG~vP~tnYiFmGDfVDRGyySLEtfT~l~~Lka-------------- 101 (306)
T KOG0373|consen 48 VTVCGDIHGQ------------FYDLLELFRTGGQVPDTNYIFMGDFVDRGYYSLETFTLLLLLKA-------------- 101 (306)
T ss_pred eeEeeccchh------------HHHHHHHHHhcCCCCCcceEEeccccccccccHHHHHHHHHHhh--------------
Confidence 4678999932 22344555554443223368899999999888777776655443
Q ss_pred cCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCC
Q psy11941 104 SDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~ 139 (313)
+.+..+..+.|||+.+.
T Consensus 102 -------------------ryP~~ITLlRGNHEsRq 118 (306)
T KOG0373|consen 102 -------------------RYPAKITLLRGNHESRQ 118 (306)
T ss_pred -------------------cCCceeEEeeccchhhh
Confidence 23457999999999876
No 126
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=91.59 E-value=9.9 Score=34.12 Aligned_cols=44 Identities=20% Similarity=0.211 Sum_probs=29.6
Q ss_pred EEEEEeeccccCcccCCcCccchhHHHHHHHHHHHH-hcCCCEEEEcCCcCCCCC
Q psy11941 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQAL-DQEVDMVLLGGDLFHINK 75 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~-~~~~d~vv~~GDlf~~~~ 75 (313)
||+|.++|+=-.. ...++.+-+...+ +.++|++|+-|--.-++.
T Consensus 1 mriLfiGDvvGk~----------Gr~~v~~~Lp~lk~kyk~dfvI~N~ENaa~G~ 45 (266)
T COG1692 1 MRILFIGDVVGKP----------GRKAVKEHLPQLKSKYKIDFVIVNGENAAGGF 45 (266)
T ss_pred CeEEEEecccCcc----------hHHHHHHHhHHHHHhhcCcEEEEcCccccCCc
Confidence 7999999986322 2234445554444 578999999888766543
No 127
>KOG0374|consensus
Probab=90.82 E-value=0.34 Score=45.50 Aligned_cols=73 Identities=22% Similarity=0.249 Sum_probs=47.2
Q ss_pred EEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCC-CEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeee
Q psy11941 23 RIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEV-DMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFID 101 (313)
Q Consensus 23 kilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~-d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 101 (313)
-|.+++|+|--.. -|-++++.+....+ .-.+++||..|.+..+.+++-.+.. ++
T Consensus 60 PV~i~GDiHGq~~------------DLlrlf~~~g~~pp~~~ylFLGDYVDRG~~slE~i~LL~a-~K------------ 114 (331)
T KOG0374|consen 60 PVKIVGDIHGQFG------------DLLRLFDLLGSFPPDQNYVFLGDYVDRGKQSLETICLLFA-LK------------ 114 (331)
T ss_pred CEEEEccCcCCHH------------HHHHHHHhcCCCCCcccEEEecccccCCccceEEeehhhh-hh------------
Confidence 4788999994432 34456655552223 3478899999999876555443211 11
Q ss_pred eccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCC
Q psy11941 102 VISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSG 140 (313)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~ 140 (313)
+..+-.++.+.|||+....
T Consensus 115 --------------------i~yp~~~~lLRGNHE~~~i 133 (331)
T KOG0374|consen 115 --------------------IKYPENVFLLRGNHECASI 133 (331)
T ss_pred --------------------hhCCceEEEeccccccccc
Confidence 1234579999999999874
No 128
>KOG2863|consensus
Probab=90.64 E-value=1.1 Score=42.20 Aligned_cols=64 Identities=19% Similarity=0.398 Sum_probs=39.7
Q ss_pred HHHHHHHHHhc---CCCEEEEcCCcCCCCCC-------CHHHHHHHHHHHHHhccCCCceeeeeccCcccccccCCCccC
Q psy11941 49 FEEILEQALDQ---EVDMVLLGGDLFHINKP-------SPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYM 118 (313)
Q Consensus 49 l~~ii~~~~~~---~~d~vv~~GDlf~~~~~-------~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (313)
+-+.+..+.+. .+|+++++||+=-.++. -+.-++++-++++=++ +
T Consensus 16 iYkti~~~ek~~~tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYs-g------------------------ 70 (456)
T KOG2863|consen 16 IYKTISLIEKRGNTKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYS-G------------------------ 70 (456)
T ss_pred HHHHHHHHHHcCCCCccEEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhC-C------------------------
Confidence 44444555555 89999999997322211 1235677777776332 1
Q ss_pred CCCCCCCCcEEEEcCCCCCCC
Q psy11941 119 DPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 119 ~~~~~~~~pv~~I~GNHD~~~ 139 (313)
...++++.++|-|||+...
T Consensus 71 --e~~APVlTIFIGGNHEAsn 89 (456)
T KOG2863|consen 71 --EIKAPVLTIFIGGNHEASN 89 (456)
T ss_pred --cccCceeEEEecCchHHHH
Confidence 1146778899999997643
No 129
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=89.97 E-value=1 Score=44.07 Aligned_cols=59 Identities=10% Similarity=0.111 Sum_probs=33.7
Q ss_pred cccEEEeCCccCccccCCCCC-----CCcccEEecCCCceeccccCccccccEEEEEEe---CCceeEEEEeCCC
Q psy11941 242 FFHFILWGHEHECRIKPEYNT-----KQRFHVCQPGSPVATSLCAGEAVQKKCGILMCN---KQNYKLVPRSLET 308 (313)
Q Consensus 242 ~~d~v~~GH~H~~~~~~~~~~-----~~~~~i~~~GS~~~~~~~e~~~~~~g~~vv~~~---~~~~~~~~i~l~~ 308 (313)
++-.+++||.|.......... ..++|-+.+.|. + +.+..+-++++- ++.+.+...-++.
T Consensus 399 nVla~LsGHvHrn~v~a~~~p~~~~pe~gFWeveTaSl--~------DfPQq~R~~Ei~~n~d~tvsi~tt~vd~ 465 (492)
T TIGR03768 399 NLLMWIAGHRHLNTVKAFPSPDPARPEYGFWQVETASL--R------DFPQQFRTFEIYLNSDDTVSIEAVNVDV 465 (492)
T ss_pred CeEEEEcCCcccccccccCCCCCCCCcCceEEEeehhh--c------cchhhceEEEEEeCCCCeEEEEEEecch
Confidence 567899999998776532111 124444444331 1 245556666664 3567777666654
No 130
>KOG0371|consensus
Probab=87.72 E-value=1.3 Score=39.78 Aligned_cols=89 Identities=18% Similarity=0.199 Sum_probs=50.7
Q ss_pred EEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCE-EEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeee
Q psy11941 23 RIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDM-VLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFID 101 (313)
Q Consensus 23 kilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~-vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 101 (313)
-+.+++|+|--. .-|-++++ +.-..+|. .++.||..|.+..|.+++..+... +
T Consensus 61 pvtvcGDvHGqf------------~dl~ELfk-iGG~~pdtnylfmGDyvdrGy~SvetVS~lva~-K------------ 114 (319)
T KOG0371|consen 61 PVTVCGDVHGQF------------HDLIELFK-IGGLAPDTNYLFMGDYVDRGYYSVETVSLLVAL-K------------ 114 (319)
T ss_pred ceEEecCcchhH------------HHHHHHHH-ccCCCCCcceeeeeeecccccchHHHHHHHHHh-h------------
Confidence 357899999322 22333332 22333443 688999999998777766644322 1
Q ss_pred eccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcC-chHHHHhhCCCee
Q psy11941 102 VISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELV-AALDIVSNSGLVN 157 (313)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~-~~~~~l~~~~~~~ 157 (313)
+ +..-.|.+++|||+...-...+ ...+.+...|..+
T Consensus 115 -------------v-------ry~~rvtilrGNHEsrqitqvygfydeclRkyg~an 151 (319)
T KOG0371|consen 115 -------------V-------RYPDRVTILRGNHESRQITQVYGFYDECLRKYGNAN 151 (319)
T ss_pred -------------c-------cccceeEEecCchHHHHHHHHHhhHHHHHhhccccc
Confidence 1 2334799999999986621111 1224555565543
No 131
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=86.89 E-value=22 Score=32.02 Aligned_cols=158 Identities=18% Similarity=0.154 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHH-hcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeeeeccCcccccccCCCccCCCCCC
Q psy11941 45 SFVSFEEILEQAL-DQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLN 123 (313)
Q Consensus 45 ~~~~l~~ii~~~~-~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (313)
...++.+.+...+ ++++|+||.-|.-.-++.- =+.+.+.++++
T Consensus 11 Gr~~v~~~Lp~L~~~~~~DfVIaNgENaa~G~G--it~~~~~~L~~---------------------------------- 54 (253)
T PF13277_consen 11 GRRAVKEHLPELKEEYGIDFVIANGENAAGGFG--ITPKIAEELFK---------------------------------- 54 (253)
T ss_dssp HHHHHHHHHHHHGG--G-SEEEEE-TTTTTTSS----HHHHHHHHH----------------------------------
T ss_pred HHHHHHHHHHHHHhhcCCCEEEECCcccCCCCC--CCHHHHHHHHh----------------------------------
Confidence 3445666666555 5799999999987766542 12232333332
Q ss_pred CCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCe-eEecccc-cCCceeeecEEEeeCCeEEEEEec---CCCch----H-
Q psy11941 124 ISLPVFTINGNHDDPSGPELVAALDIVSNSGLV-NYFGKCT-NLNEITLNPLIIQKNETKVAIFGL---GYVKD----E- 193 (313)
Q Consensus 124 ~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~-~~~~~~~-~~~~~~~~~~~l~~~~~~~~i~gl---~~~~~----~- 193 (313)
.++.|+.. |||=+... ..++++.....+ +-+..+. ....- ..+++.++.++.|.-+ -+..+ .
T Consensus 55 ~GvDviT~-GNH~wdkk----ei~~~i~~~~~ilRPaN~p~~~pG~G---~~i~~~~g~kv~ViNl~Gr~fm~~~~~PF~ 126 (253)
T PF13277_consen 55 AGVDVITM-GNHIWDKK----EIFDFIDKEPRILRPANYPPGTPGRG---YRIFEKNGKKVAVINLMGRVFMPPIDCPFR 126 (253)
T ss_dssp HT-SEEE---TTTTSST----THHHHHHH-SSEE--TTS-TT-SSBS---EEEEEETTEEEEEEEEE--TTS---S-HHH
T ss_pred cCCCEEec-CcccccCc----HHHHHHhcCCCcEECCCCCCCCCcCc---EEEEEECCEEEEEEECcccccCCCCCChHH
Confidence 47788776 99977653 345555553322 1111011 01110 1455567777765443 23322 2
Q ss_pred HHHHHhhhcchhccCCCCCCCcceEEEeeccccCCCCcCccccccCCCcccEEEeCCccCcccc
Q psy11941 194 RLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHEHECRIK 257 (313)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~~~~~~~~~~~~~~d~v~~GH~H~~~~~ 257 (313)
.+.+++++ ++ ....+.|+=+|..-.+. +....-.++..+..|+-=|+|-+..-
T Consensus 127 ~~d~~l~~-----l~---~~~~~iiVDFHAEaTSE---K~A~g~~lDGrvsaV~GTHTHVqTaD 179 (253)
T PF13277_consen 127 AADRLLEE-----LK---EETDIIIVDFHAEATSE---KQAMGWYLDGRVSAVVGTHTHVQTAD 179 (253)
T ss_dssp HHHHHHHH-------------SEEEEEEE-S-HHH---HHHHHHHHBTTBSEEEEESSSS-BS-
T ss_pred HHHHHHHh-----cc---ccCCEEEEEeecCcHHH---HHHHHHHhCCcEEEEEeCCCCccCch
Confidence 12223222 11 12337888889842210 00001123456899999999988754
No 132
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=85.32 E-value=0.67 Score=40.15 Aligned_cols=30 Identities=13% Similarity=0.085 Sum_probs=22.7
Q ss_pred CCcccEEEeCCccCccccCCCCCCCcccEEecCC
Q psy11941 240 PSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGS 273 (313)
Q Consensus 240 ~~~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS 273 (313)
..+++++++||+|.+..... ++..++++||
T Consensus 187 ~~~~~~~i~GH~H~~~~~~~----~~~~~~n~G~ 216 (217)
T cd07398 187 RKGVDGVICGHTHRPALHEL----DGKLYINLGD 216 (217)
T ss_pred hcCCCEEEECCCCCCCeEEE----CCEEEEECCC
Confidence 46789999999999987532 3456777776
No 133
>KOG3818|consensus
Probab=84.62 E-value=4.6 Score=39.06 Aligned_cols=90 Identities=11% Similarity=0.167 Sum_probs=61.7
Q ss_pred eEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceee
Q psy11941 21 TIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFI 100 (313)
Q Consensus 21 ~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 100 (313)
.-+++++||+||... ..+.+|++++..-...-|-+||+.|.+....... .+..++.+.|+.|+..
T Consensus 282 d~~fVfLSdV~LD~~--------~vm~aL~kifqgy~~~pP~~iIlcG~FtS~p~~~-~s~~~~k~~f~~LA~~------ 346 (525)
T KOG3818|consen 282 DTSFVFLSDVFLDDK--------KVMEALRKIFQGYKDAPPTAIILCGSFTSSPRQT-SSSDQLKDGFRWLAAQ------ 346 (525)
T ss_pred CceEEEEehhccccH--------HHHHHHHHHHhhccCCCCeEEEEecccccccccc-chHHHHHHHHHHHHhh------
Confidence 445788899998874 4556778888777777889999999998775432 3566777777766521
Q ss_pred eeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCC
Q psy11941 101 DVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSG 140 (313)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~ 140 (313)
++ ...+. -.+...++|||-.|....
T Consensus 347 --l~------------~~~~~-~ekT~fIFVPGP~Dp~~~ 371 (525)
T KOG3818|consen 347 --LT------------CFRKD-YEKTQFIFVPGPNDPWVD 371 (525)
T ss_pred --cc------------ccccc-cccceEEEecCCCCCCcC
Confidence 10 00111 134679999999999884
No 134
>KOG0375|consensus
Probab=84.40 E-value=2.1 Score=40.25 Aligned_cols=71 Identities=20% Similarity=0.235 Sum_probs=46.6
Q ss_pred EEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeeeec
Q psy11941 24 IMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDVI 103 (313)
Q Consensus 24 ilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 103 (313)
|-+++|+|--. -.|-++.+.-..-.----++.||..|.+..|.+.+-.+... + +
T Consensus 90 iTVCGDIHGQf------------~DLmKLFEVGG~PA~t~YLFLGDYVDRGyFSiECvlYLwsL-K-i------------ 143 (517)
T KOG0375|consen 90 ITVCGDIHGQF------------FDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWSL-K-I------------ 143 (517)
T ss_pred eeEecccchHH------------HHHHHHHHccCCcccceeEeeccccccceeeeehHHHHHHH-h-c------------
Confidence 57899999332 22445555544433344789999999998887876654322 1 1
Q ss_pred cCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCC
Q psy11941 104 SDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~ 139 (313)
......+++.|||++..
T Consensus 144 -------------------~yp~tl~lLRGNHECrH 160 (517)
T KOG0375|consen 144 -------------------NYPKTLFLLRGNHECRH 160 (517)
T ss_pred -------------------CCCCeEEEecCCcchhh
Confidence 22346889999999976
No 135
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=77.39 E-value=12 Score=32.72 Aligned_cols=57 Identities=28% Similarity=0.458 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeeeeccCcccccccCCCccCCCCCCCCC
Q psy11941 47 VSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISL 126 (313)
Q Consensus 47 ~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (313)
+.+.+++..+.+.+.|++++.|=. ....+.+..+.+.+++ ..++
T Consensus 11 e~~~~ia~~v~~~gtDaI~VGGS~----gvt~~~~~~~v~~ik~--------------------------------~~~l 54 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMVGGSL----GIVESNLDQTVKKIKK--------------------------------ITNL 54 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcC----CCCHHHHHHHHHHHHh--------------------------------hcCC
Confidence 446667778888899999998862 1233567777777774 2468
Q ss_pred cEEEEcCCCCCCC
Q psy11941 127 PVFTINGNHDDPS 139 (313)
Q Consensus 127 pv~~I~GNHD~~~ 139 (313)
||++-|||++.-.
T Consensus 55 Pvilfp~~~~~i~ 67 (205)
T TIGR01769 55 PVILFPGNVNGLS 67 (205)
T ss_pred CEEEECCCccccC
Confidence 9999999999766
No 136
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=73.93 E-value=2.9 Score=36.73 Aligned_cols=30 Identities=20% Similarity=0.213 Sum_probs=22.4
Q ss_pred cccEEEeCCccCccccCCCCCCCcccEEecCCCc
Q psy11941 242 FFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPV 275 (313)
Q Consensus 242 ~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS~~ 275 (313)
+.++|++||+|.+.... .+...++++||..
T Consensus 179 ~~~~vv~GHTh~~~~~~----~~~~i~IDtGs~~ 208 (218)
T PRK09968 179 GADYFIFGHMMFDNIQT----FANQIYIDTGSPK 208 (218)
T ss_pred CCCEEEECCCCcCccee----ECCEEEEECCCCC
Confidence 45899999999876542 2456788999843
No 137
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=69.86 E-value=5 Score=40.59 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=23.2
Q ss_pred HHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHH
Q psy11941 52 ILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLR 89 (313)
Q Consensus 52 ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~ 89 (313)
+...+++.-+|-+=+.||+||.++.+ ..+++.|.
T Consensus 176 l~~lIqrL~VDhLHIvGDIyDRGp~p----d~ImD~Lm 209 (640)
T PF06874_consen 176 LSELIQRLAVDHLHIVGDIYDRGPRP----DKIMDRLM 209 (640)
T ss_pred HHHHHHHHhhhheeecccccCCCCCh----hHHHHHHh
Confidence 33444566799999999999998653 33444554
No 138
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=68.65 E-value=4.5 Score=35.03 Aligned_cols=29 Identities=14% Similarity=0.037 Sum_probs=21.9
Q ss_pred cccEEEeCCccCccccCCCCCCCcccEEecCCC
Q psy11941 242 FFHFILWGHEHECRIKPEYNTKQRFHVCQPGSP 274 (313)
Q Consensus 242 ~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS~ 274 (313)
+.++|++||+|.+.... .+...+++|||.
T Consensus 168 ~~~~iV~GHTh~~~~~~----~~~~i~ID~Gsv 196 (207)
T cd07424 168 GVDAVVHGHTPVKRPLR----LGNVLYIDTGAV 196 (207)
T ss_pred CCCEEEECCCCCCcceE----ECCEEEEECCCC
Confidence 35899999999987543 245678899984
No 139
>KOG2476|consensus
Probab=64.38 E-value=21 Score=34.98 Aligned_cols=43 Identities=14% Similarity=0.298 Sum_probs=29.8
Q ss_pred EEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcC-CCEEEEcCCcCCCCC
Q psy11941 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQE-VDMVLLGGDLFHINK 75 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~-~d~vv~~GDlf~~~~ 75 (313)
.|||.++|.--.. ...++++-+.-++.+ .|++++.|++|.+..
T Consensus 6 ~kILv~Gd~~Gr~-----------~eli~rI~~v~Kk~GpFd~liCvGnfF~~~~ 49 (528)
T KOG2476|consen 6 AKILVCGDVEGRF-----------DELIKRIQKVNKKSGPFDLLICVGNFFGHDT 49 (528)
T ss_pred ceEEEEcCccccH-----------HHHHHHHHHHhhcCCCceEEEEecccCCCcc
Confidence 6899999976222 223455555555667 699999999999743
No 140
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=62.11 E-value=33 Score=30.43 Aligned_cols=53 Identities=26% Similarity=0.422 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeeeeccCcccccccCCCccCCCCCCCCCcEE
Q psy11941 50 EEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVF 129 (313)
Q Consensus 50 ~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~ 129 (313)
.+.++.+.+.+.|++++.|=.= .+.+.+..+.+.+++ ..+|++
T Consensus 17 ~~~~~~~~~~gtdai~vGGS~~----vt~~~~~~~v~~ik~---------------------------------~~lPvi 59 (223)
T TIGR01768 17 DEIAKAAAESGTDAILIGGSQG----VTYEKTDTLIEALRR---------------------------------YGLPII 59 (223)
T ss_pred HHHHHHHHhcCCCEEEEcCCCc----ccHHHHHHHHHHHhc---------------------------------cCCCEE
Confidence 3577777788999999999551 222456666667764 348999
Q ss_pred EEcCCCCCCC
Q psy11941 130 TINGNHDDPS 139 (313)
Q Consensus 130 ~I~GNHD~~~ 139 (313)
+-|||++.-.
T Consensus 60 lfp~~~~~i~ 69 (223)
T TIGR01768 60 LFPSNPTNVS 69 (223)
T ss_pred EeCCCccccC
Confidence 9999999766
No 141
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=61.24 E-value=35 Score=30.44 Aligned_cols=56 Identities=23% Similarity=0.417 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeeeeccCcccccccCCCccCCCCCCCCCcE
Q psy11941 49 FEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPV 128 (313)
Q Consensus 49 l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv 128 (313)
-.++++.+.+-+-|+|++.|=. ..+.+.+..+.+.++. +..+|+
T Consensus 30 ~~ei~~~~~~~GTDaImIGGS~----gvt~~~~~~~v~~ik~--------------------------------~~~lPv 73 (240)
T COG1646 30 ADEIAEAAAEAGTDAIMIGGSD----GVTEENVDNVVEAIKE--------------------------------RTDLPV 73 (240)
T ss_pred cHHHHHHHHHcCCCEEEECCcc----cccHHHHHHHHHHHHh--------------------------------hcCCCE
Confidence 4577888888999999999854 2233566777777773 356899
Q ss_pred EEEcCCCCCCCC
Q psy11941 129 FTINGNHDDPSG 140 (313)
Q Consensus 129 ~~I~GNHD~~~~ 140 (313)
+.-||||..-..
T Consensus 74 ilfP~~~~~is~ 85 (240)
T COG1646 74 ILFPGSPSGISP 85 (240)
T ss_pred EEecCChhccCc
Confidence 999999988663
No 142
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=57.22 E-value=29 Score=33.97 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=18.1
Q ss_pred CCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHh-cCCCEEEEcCCcCCC
Q psy11941 19 RNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALD-QEVDMVLLGGDLFHI 73 (313)
Q Consensus 19 ~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~-~~~d~vv~~GDlf~~ 73 (313)
...+||+..|+-+..... +.+++. +.+ .++|++|++||..-.
T Consensus 103 ~~~~r~a~~SC~~~~~~~---------~~~~~~----~a~~~~~D~~l~lGD~IY~ 145 (453)
T PF09423_consen 103 PDPFRFAFGSCQNYEDGY---------FPAYRR----IAERDDPDFVLHLGDQIYE 145 (453)
T ss_dssp ---EEEEEE----CCC------------HHHHH----HTT-S--SEEEE-S-SS--
T ss_pred CCceEEEEECCCCcccCh---------HHHHHh----hhccCCCcEEEEeCCeeec
Confidence 346999999999864321 223333 334 689999999997644
No 143
>PF07451 SpoVAD: Stage V sporulation protein AD (SpoVAD); InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation [].; PDB: 3LMA_D 3LM6_A.
Probab=56.69 E-value=5.7 Score=36.78 Aligned_cols=50 Identities=22% Similarity=0.244 Sum_probs=26.7
Q ss_pred EeeccccCcccCCcCccchhHHHHHHHHHHHH--hcCCCEEEEcCCcCCCCCC
Q psy11941 26 IASDIHLGYLETDRERGNDSFVSFEEILEQAL--DQEVDMVLLGGDLFHINKP 76 (313)
Q Consensus 26 h~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~--~~~~d~vv~~GDlf~~~~~ 76 (313)
...|.++|.+.+.+--..-...+.+.+++++. +.++| ++++|||.+.-..
T Consensus 36 ~~~D~~~Ge~swEkAE~~m~~~A~~~al~Ka~l~~~dId-~~~aGDLlnQ~i~ 87 (329)
T PF07451_consen 36 IYEDDYFGEKSWEKAESKMQKEAVELALKKAGLKKEDID-YLFAGDLLNQIIS 87 (329)
T ss_dssp E-SSTTTTSSSHHHHHHHHHHHHHHHHHHHTT--GGG-S-EEEEEETTCCCCH
T ss_pred cccccccCcccHHHHHHHHHHHHHHHHHHHcCCCHHHCe-EEEehhhhhhhHH
Confidence 44566666654432111122234444454443 46888 6899999998643
No 144
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=54.73 E-value=65 Score=26.85 Aligned_cols=41 Identities=15% Similarity=0.278 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHh-cCCCEEEEcCCcCCCC-CCCHHHHHHH
Q psy11941 44 DSFVSFEEILEQALD-QEVDMVLLGGDLFHIN-KPSPTTLKKC 84 (313)
Q Consensus 44 ~~~~~l~~ii~~~~~-~~~d~vv~~GDlf~~~-~~~~~~~~~~ 84 (313)
|..+.+.+.++.+.+ .++|+||.+|=.--.. +...+.+..+
T Consensus 46 Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~~D~t~eal~~l 88 (163)
T TIGR02667 46 DDIYQIRAQVSAWIADPDVQVILITGGTGFTGRDVTPEALEPL 88 (163)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCCcHHHHHHH
Confidence 444556677766653 6899999999875443 3444555554
No 145
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=54.39 E-value=57 Score=25.20 Aligned_cols=38 Identities=34% Similarity=0.434 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHH
Q psy11941 49 FEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRK 90 (313)
Q Consensus 49 l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~ 90 (313)
.+++++.+.+.++|+|.++.=...+ ......+.+.+++
T Consensus 39 ~~~l~~~~~~~~pdvV~iS~~~~~~----~~~~~~~i~~l~~ 76 (119)
T cd02067 39 PEEIVEAAKEEDADAIGLSGLLTTH----MTLMKEVIEELKE 76 (119)
T ss_pred HHHHHHHHHHcCCCEEEEecccccc----HHHHHHHHHHHHH
Confidence 5688899999999999998764433 2566777777775
No 146
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=52.42 E-value=32 Score=24.56 Aligned_cols=40 Identities=20% Similarity=0.251 Sum_probs=27.7
Q ss_pred CeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCc
Q psy11941 20 NTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDL 70 (313)
Q Consensus 20 ~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDl 70 (313)
..|||++++.-.+... ..+...++.+.++.++.+|+.|.-
T Consensus 2 ~g~rVli~GgR~~~D~-----------~~i~~~Ld~~~~~~~~~~lvhGga 41 (71)
T PF10686_consen 2 EGMRVLITGGRDWTDH-----------ELIWAALDKVHARHPDMVLVHGGA 41 (71)
T ss_pred CCCEEEEEECCccccH-----------HHHHHHHHHHHHhCCCEEEEECCC
Confidence 5789999887665431 135556677777779998888843
No 147
>PRK09982 universal stress protein UspD; Provisional
Probab=50.03 E-value=45 Score=26.65 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCCCEEEEcC
Q psy11941 49 FEEILEQALDQEVDMVLLGG 68 (313)
Q Consensus 49 l~~ii~~~~~~~~d~vv~~G 68 (313)
-+.+++.|.+.++|+||+ |
T Consensus 92 ~~~I~~~A~~~~aDLIVm-G 110 (142)
T PRK09982 92 PETLLEIMQKEQCDLLVC-G 110 (142)
T ss_pred HHHHHHHHHHcCCCEEEE-e
Confidence 367888888999997666 5
No 148
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=48.57 E-value=71 Score=28.48 Aligned_cols=50 Identities=20% Similarity=0.367 Sum_probs=36.0
Q ss_pred HHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcC
Q psy11941 54 EQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTING 133 (313)
Q Consensus 54 ~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~G 133 (313)
+.+.+.+.|+|++.|=.= ...+.+..+.+.+++ .++|++.-||
T Consensus 26 ~~~~~~gtdai~vGGS~~----vt~~~~~~~v~~ik~---------------------------------~~lPvilfp~ 68 (232)
T PRK04169 26 EAICESGTDAIIVGGSDG----VTEENVDELVKAIKE---------------------------------YDLPVILFPG 68 (232)
T ss_pred HHHHhcCCCEEEEcCCCc----cchHHHHHHHHHHhc---------------------------------CCCCEEEeCC
Confidence 556678999999998551 122456666666663 3589999999
Q ss_pred CCCCCCC
Q psy11941 134 NHDDPSG 140 (313)
Q Consensus 134 NHD~~~~ 140 (313)
|++.-..
T Consensus 69 ~~~~i~~ 75 (232)
T PRK04169 69 NIEGISP 75 (232)
T ss_pred CccccCc
Confidence 9998663
No 149
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=48.40 E-value=50 Score=29.44 Aligned_cols=52 Identities=29% Similarity=0.461 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeeeeccCcccccccCCCccCCCCCCCCCcEE
Q psy11941 50 EEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVF 129 (313)
Q Consensus 50 ~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~ 129 (313)
++.++.+.+.+.|++++.|=. .. .+++.+.+.+++. .++|++
T Consensus 22 ~~~~~~~~~~gtDai~VGGS~-~~-----~~~d~vv~~ik~~--------------------------------~~lPvi 63 (230)
T PF01884_consen 22 EEALEAACESGTDAIIVGGSD-TG-----VTLDNVVALIKRV--------------------------------TDLPVI 63 (230)
T ss_dssp HHHHHHHHCTT-SEEEEE-ST-HC-----HHHHHHHHHHHHH--------------------------------SSS-EE
T ss_pred HHHHHHHHhcCCCEEEECCCC-Cc-----cchHHHHHHHHhc--------------------------------CCCCEE
Confidence 456666678999999999977 11 4677777777763 368999
Q ss_pred EEcCCCCCCC
Q psy11941 130 TINGNHDDPS 139 (313)
Q Consensus 130 ~I~GNHD~~~ 139 (313)
.-|||.+.-.
T Consensus 64 lfPg~~~~vs 73 (230)
T PF01884_consen 64 LFPGSPSQVS 73 (230)
T ss_dssp EETSTCCG--
T ss_pred EeCCChhhcC
Confidence 9999998876
No 150
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=47.65 E-value=1e+02 Score=23.55 Aligned_cols=50 Identities=16% Similarity=0.357 Sum_probs=37.7
Q ss_pred HHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeeeeccCcccccccCCCccCCCCCCCCCcE
Q psy11941 49 FEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPV 128 (313)
Q Consensus 49 l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv 128 (313)
+.+.++.++.-++.+||++++. | ..++.-++....| .++||
T Consensus 24 ~k~tiK~lk~gkaKliiiAsN~-----P--~~~k~~ieyYAkL--------------------------------s~ipV 64 (100)
T COG1911 24 SKRTIKSLKLGKAKLIIIASNC-----P--KELKEDIEYYAKL--------------------------------SDIPV 64 (100)
T ss_pred hHHHHHHHHcCCCcEEEEecCC-----C--HHHHHHHHHHHHH--------------------------------cCCcE
Confidence 4577888888899999999875 3 5666666666655 26899
Q ss_pred EEEcCCCCC
Q psy11941 129 FTINGNHDD 137 (313)
Q Consensus 129 ~~I~GNHD~ 137 (313)
|.-+||.--
T Consensus 65 ~~y~Gt~~e 73 (100)
T COG1911 65 YVYEGTSVE 73 (100)
T ss_pred EEecCCcee
Confidence 999998633
No 151
>PHA03008 hypothetical protein; Provisional
Probab=46.11 E-value=20 Score=31.08 Aligned_cols=40 Identities=10% Similarity=-0.046 Sum_probs=26.2
Q ss_pred ceEEEeeccccCCCCc----CccccccCCCcccEEEeCCccCcc
Q psy11941 216 IYILVLHQNRPERGTV----KNIAEDSIPSFFHFILWGHEHECR 255 (313)
Q Consensus 216 ~~Ilv~H~~~~~~~~~----~~~~~~~~~~~~d~v~~GH~H~~~ 255 (313)
..|+++|+|+...+.. ..+...+.+-.+.|.+.||.-.+.
T Consensus 162 tDILITHgPP~GhLD~~vGC~~Ll~~I~rVKPKyHVFGh~~~~~ 205 (234)
T PHA03008 162 CDILITASPPFAILDDDLACGDLFSKVIKIKPKFHIFNGLTQFS 205 (234)
T ss_pred CCEEEeCCCCccccccccCcHHHHHHHHHhCCcEEEeCCccccC
Confidence 7799999998765421 223333344467999999955443
No 152
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=45.71 E-value=1.4e+02 Score=24.31 Aligned_cols=38 Identities=21% Similarity=0.222 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhc-CCCEEEEcCCcCCCC-CCCHHHHHHH
Q psy11941 47 VSFEEILEQALDQ-EVDMVLLGGDLFHIN-KPSPTTLKKC 84 (313)
Q Consensus 47 ~~l~~ii~~~~~~-~~d~vv~~GDlf~~~-~~~~~~~~~~ 84 (313)
+.+.+.++.+.+. +.|+||.+|=.--.. +...+.+..+
T Consensus 47 ~~i~~~l~~~~~~~~~DlVittGG~s~g~~D~t~~al~~~ 86 (152)
T cd00886 47 DEIREALIEWADEDGVDLILTTGGTGLAPRDVTPEATRPL 86 (152)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCcCCCCCcCcHHHHHHH
Confidence 4455656555443 799999999876543 3344555554
No 153
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=45.62 E-value=75 Score=24.89 Aligned_cols=38 Identities=32% Similarity=0.333 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHH
Q psy11941 49 FEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRK 90 (313)
Q Consensus 49 l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~ 90 (313)
.+++++.+.+.++|+|.+++-.... .+.+..+.+.|++
T Consensus 39 ~e~~~~~a~~~~~d~V~iS~~~~~~----~~~~~~~~~~L~~ 76 (122)
T cd02071 39 PEEIVEAAIQEDVDVIGLSSLSGGH----MTLFPEVIELLRE 76 (122)
T ss_pred HHHHHHHHHHcCCCEEEEcccchhh----HHHHHHHHHHHHh
Confidence 5689999999999999999876322 2456666666664
No 154
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=44.00 E-value=75 Score=25.56 Aligned_cols=39 Identities=26% Similarity=0.143 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHH
Q psy11941 48 SFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRK 90 (313)
Q Consensus 48 ~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~ 90 (313)
.-+++++.+.++++|.|.+++=+..+. +....+.+.|++
T Consensus 41 s~e~~v~aa~e~~adii~iSsl~~~~~----~~~~~~~~~L~~ 79 (132)
T TIGR00640 41 TPEEIARQAVEADVHVVGVSSLAGGHL----TLVPALRKELDK 79 (132)
T ss_pred CHHHHHHHHHHcCCCEEEEcCchhhhH----HHHHHHHHHHHh
Confidence 456899999999999999998774332 556777777764
No 155
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=42.51 E-value=35 Score=27.83 Aligned_cols=66 Identities=15% Similarity=0.169 Sum_probs=33.0
Q ss_pred CCCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHH
Q psy11941 18 DRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLR 89 (313)
Q Consensus 18 ~~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~ 89 (313)
...+++++-+-|.+-..... ...+...+..++++.+.++++++|.|+++=+..+ .+.++++.+.++
T Consensus 100 ~~~g~~vvg~~d~~~~~~~~-~~~~~~~lg~~~~l~~~~~~~~id~v~ial~~~~-----~~~i~~ii~~~~ 165 (175)
T PF13727_consen 100 PRLGYRVVGFVDDDPSDRGP-EIDGVPVLGDLDDLPELVREHDIDEVIIALPWSE-----EEQIKRIIEELE 165 (175)
T ss_dssp -SSSEEEEEEE-S-GGGTT--EETTEEEE--GGGHHHHHHHHT--EEEE--TTS------HHHHHHHHHHHH
T ss_pred hhcCceEEEEEeCchhhccC-cccCceeEcCHHHHHHHHHhCCCCEEEEEcCccC-----HHHHHHHHHHHH
Confidence 34466666665555332111 0011122335678889999999999999965532 256677777766
No 156
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=41.11 E-value=36 Score=30.02 Aligned_cols=29 Identities=10% Similarity=-0.003 Sum_probs=20.5
Q ss_pred cccEEEeCCccCccccCCCCCCCcccEEecCCC
Q psy11941 242 FFHFILWGHEHECRIKPEYNTKQRFHVCQPGSP 274 (313)
Q Consensus 242 ~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS~ 274 (313)
+.+++++||+|...... .+....+.+||.
T Consensus 181 ~~~~vv~GHt~~~~~~~----~~~~i~IDtGav 209 (234)
T cd07423 181 GDALVVYGHTPVPEPRW----LNNTINIDTGCV 209 (234)
T ss_pred CCeEEEECCCCCccceE----eCCEEEEECCCC
Confidence 34799999999876542 244567788884
No 157
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=40.73 E-value=39 Score=30.62 Aligned_cols=60 Identities=25% Similarity=0.401 Sum_probs=40.2
Q ss_pred CCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCC--CCCCHHHHHHHHHHHHHhc
Q psy11941 19 RNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHI--NKPSPTTLKKCLETLRKYC 92 (313)
Q Consensus 19 ~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~--~~~~~~~~~~~~~~l~~l~ 92 (313)
....+|+|+||+.--. .++.++.+.+.+|+.+++.|=.+-- .......++...+.|+++.
T Consensus 174 dg~~~i~faSDvqGp~--------------~~~~l~~i~e~~P~v~ii~GPpty~lg~r~~~~~~E~~irNl~~ii 235 (304)
T COG2248 174 DGKSSIVFASDVQGPI--------------NDEALEFILEKRPDVLIIGGPPTYLLGYRVGPKSLEKGIRNLERII 235 (304)
T ss_pred cCCeEEEEcccccCCC--------------ccHHHHHHHhcCCCEEEecCCchhHhhhhcChHHHHHHHHHHHHHH
Confidence 3466899999998322 1245566667799999999987611 1233466777777887653
No 158
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=40.39 E-value=99 Score=27.30 Aligned_cols=54 Identities=26% Similarity=0.386 Sum_probs=36.9
Q ss_pred HHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeeeeccCcccccccCCCccCCCCCCCCCcEE
Q psy11941 50 EEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVF 129 (313)
Q Consensus 50 ~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~ 129 (313)
.++.+.+.+.+.|++++.|=.=- + +++..+.+.+++.. + .+|++
T Consensus 15 ~~~~~~~~~~gtdai~vGGS~~v----~-~~~~~~~~~ik~~~------------------------------~-~~Pvi 58 (219)
T cd02812 15 EEIAKLAEESGTDAIMVGGSDGV----S-STLDNVVRLIKRIR------------------------------R-PVPVI 58 (219)
T ss_pred HHHHHHHHhcCCCEEEECCccch----h-hhHHHHHHHHHHhc------------------------------C-CCCEE
Confidence 34555566688999999995521 1 35566666676532 2 48999
Q ss_pred EEcCCCCCCC
Q psy11941 130 TINGNHDDPS 139 (313)
Q Consensus 130 ~I~GNHD~~~ 139 (313)
.-|||++.-.
T Consensus 59 lfp~~~~~i~ 68 (219)
T cd02812 59 LFPSNPEAVS 68 (219)
T ss_pred EeCCCccccC
Confidence 9999999765
No 159
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=39.62 E-value=1.1e+02 Score=28.93 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCcC
Q psy11941 47 VSFEEILEQALDQEVDMVLLGGDLF 71 (313)
Q Consensus 47 ~~l~~ii~~~~~~~~d~vv~~GDlf 71 (313)
..+.++.+...+.+||+|++.||-+
T Consensus 80 ~~~~~~~~~~~~~~Pd~vlv~GD~~ 104 (365)
T TIGR03568 80 LTIIGFSDAFERLKPDLVVVLGDRF 104 (365)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCch
Confidence 4556667777889999999999987
No 160
>PRK15005 universal stress protein F; Provisional
Probab=38.99 E-value=59 Score=25.60 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=13.9
Q ss_pred HHHHHHHHHhcCCCEEEE
Q psy11941 49 FEEILEQALDQEVDMVLL 66 (313)
Q Consensus 49 l~~ii~~~~~~~~d~vv~ 66 (313)
.+.+++.+.+.++|+||+
T Consensus 96 ~~~I~~~a~~~~~DLIV~ 113 (144)
T PRK15005 96 KDRILELAKKIPADMIII 113 (144)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 456777888889997777
No 161
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=38.87 E-value=29 Score=30.31 Aligned_cols=29 Identities=14% Similarity=0.103 Sum_probs=20.7
Q ss_pred cccEEEeCCccCccccCCCCCCCcccEEecCCC
Q psy11941 242 FFHFILWGHEHECRIKPEYNTKQRFHVCQPGSP 274 (313)
Q Consensus 242 ~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS~ 274 (313)
+.++|++||+|...... .++...+.+||.
T Consensus 179 ~~~~vv~GHT~~~~~~~----~~~~i~IDtGav 207 (218)
T PRK11439 179 GADHFWFGHTPLRHRVD----IGNLHYIDTGAV 207 (218)
T ss_pred CCCEEEECCccCCCccc----cCCEEEEECCCC
Confidence 45789999999876542 245567788873
No 162
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=38.81 E-value=1.4e+02 Score=24.19 Aligned_cols=39 Identities=18% Similarity=0.202 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHH
Q psy11941 48 SFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRK 90 (313)
Q Consensus 48 ~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~ 90 (313)
..+++++.|+++++|+|.++.=+.++- ..+..+.+.|++
T Consensus 40 ~~e~~v~aa~~~~adiVglS~l~~~~~----~~~~~~~~~l~~ 78 (134)
T TIGR01501 40 PQEEFIKAAIETKADAILVSSLYGHGE----IDCKGLRQKCDE 78 (134)
T ss_pred CHHHHHHHHHHcCCCEEEEecccccCH----HHHHHHHHHHHH
Confidence 467899999999999999987665442 467777777774
No 163
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=38.11 E-value=31 Score=28.77 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=18.9
Q ss_pred ceEEEeeccccCCCCcCccccccCCCcccEEEeCCccCcc
Q psy11941 216 IYILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHEHECR 255 (313)
Q Consensus 216 ~~Ilv~H~~~~~~~~~~~~~~~~~~~~~d~v~~GH~H~~~ 255 (313)
-.++++|++.. . .. ...|++++||+|-..
T Consensus 107 ~~~~~~HG~~~-------~-~~---~~~~~~i~GH~HP~~ 135 (172)
T cd07391 107 GGFLFFHGHKP-------P-PP---LDAELVIIGHEHPAI 135 (172)
T ss_pred CCEEEEeCCCC-------C-Cc---CCCCEEEEccCCCcE
Confidence 47888898522 1 11 235899999999444
No 164
>KOG3325|consensus
Probab=37.91 E-value=77 Score=26.36 Aligned_cols=41 Identities=22% Similarity=0.475 Sum_probs=28.6
Q ss_pred EEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcC
Q psy11941 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLF 71 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf 71 (313)
|-++.++|+|+-.+. .+.-..|++++ .--++..|+.+|++.
T Consensus 1 mLvL~lgD~HiP~Ra------~~Lp~KFkklL---vPgki~hilctGNlc 41 (183)
T KOG3325|consen 1 MLVLVLGDLHIPHRA------NDLPAKFKKLL---VPGKIQHILCTGNLC 41 (183)
T ss_pred CEEEEeccccCCccc------cccCHHHHhcc---CCCceeEEEEeCCcc
Confidence 457899999986543 33445566666 345678899999974
No 165
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=36.46 E-value=71 Score=26.65 Aligned_cols=45 Identities=16% Similarity=0.273 Sum_probs=28.1
Q ss_pred HHHHHHHHHHh-cCCCEEEE--cCCcCCCCCCCHHHHHHHHHHHHHhc
Q psy11941 48 SFEEILEQALD-QEVDMVLL--GGDLFHINKPSPTTLKKCLETLRKYC 92 (313)
Q Consensus 48 ~l~~ii~~~~~-~~~d~vv~--~GDlf~~~~~~~~~~~~~~~~l~~l~ 92 (313)
.++++.+.+.+ .++++||+ ..++......+......+++.|++++
T Consensus 128 ~~~~l~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la 175 (193)
T PF13481_consen 128 DLEELEAALKELYGPDLVVIDPLQSLHDGDENSNSAVAQLMQELKRLA 175 (193)
T ss_dssp HHHHHHHHHTT----SEEEEE-GGGG--S-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCcEEEEcCHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 46778888888 78999998 78888764444455577888888764
No 166
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=36.45 E-value=1.9e+02 Score=26.03 Aligned_cols=46 Identities=13% Similarity=0.166 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 46 FVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 46 ~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
+..+++.++...+.+++.|++.|-.=....-+.++..++.+...+.
T Consensus 17 ~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~ 62 (281)
T cd00408 17 LDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEA 62 (281)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHH
Confidence 3468889999999999999999987777777778888888877754
No 167
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=35.68 E-value=79 Score=31.80 Aligned_cols=62 Identities=13% Similarity=0.088 Sum_probs=39.3
Q ss_pred EeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHH
Q psy11941 26 IASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLR 89 (313)
Q Consensus 26 h~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~ 89 (313)
-+||+|+....+. ..++.++.+.++++.+++++.+..+.+-++||....+.+.+..+.+.+.
T Consensus 103 ~~Sd~h~~~~l~~--s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~ 164 (526)
T TIGR00977 103 KSWDLHVLEALQT--TLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYKANPEYALATLATAQ 164 (526)
T ss_pred CCCHHHHHHHhCC--CHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHHH
Confidence 3589998764432 2356666777888888888877666677777765444444444444443
No 168
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=35.16 E-value=57 Score=32.11 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=21.3
Q ss_pred HHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHH
Q psy11941 56 ALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLR 89 (313)
Q Consensus 56 ~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~ 89 (313)
+.+.-+|.+=+.||++|.++.+ ...++.|-
T Consensus 186 iqrLvVDhLHiVGDIyDRGP~p----d~Imd~L~ 215 (648)
T COG3855 186 IQRLVVDHLHIVGDIYDRGPYP----DKIMDTLI 215 (648)
T ss_pred HHHHhhhheeeecccccCCCCc----hHHHHHHh
Confidence 3355799999999999998754 33444554
No 169
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=35.05 E-value=2e+02 Score=26.26 Aligned_cols=46 Identities=13% Similarity=0.169 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 46 FVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 46 ~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
...++++++...+.++|.|++.|=.=....-+.++..++.+...+.
T Consensus 25 ~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~ 70 (296)
T TIGR03249 25 EAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVST 70 (296)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHH
Confidence 3468899999999999999998887777777778888888876653
No 170
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=34.20 E-value=1.8e+02 Score=27.52 Aligned_cols=49 Identities=18% Similarity=0.294 Sum_probs=37.2
Q ss_pred CCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCC
Q psy11941 19 RNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPS 77 (313)
Q Consensus 19 ~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~ 77 (313)
..-+--+.++|--++. ...++.+++++.+++.++| ++++|=-|+.++..
T Consensus 48 ~eIv~TiiCGDnyf~e---------n~eea~~~i~~mv~~~~pD-~viaGPaFnagrYG 96 (349)
T PF07355_consen 48 AEIVATIICGDNYFNE---------NKEEALKKILEMVKKLKPD-VVIAGPAFNAGRYG 96 (349)
T ss_pred CEEEEEEEECcchhhh---------CHHHHHHHHHHHHHhcCCC-EEEEcCCcCCchHH
Confidence 4455667777766554 2345788999999999999 78999999998753
No 171
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=34.06 E-value=55 Score=29.18 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=16.3
Q ss_pred EEEEcCCcCCCC---CCCHHHHHHHHHHHHHh
Q psy11941 63 MVLLGGDLFHIN---KPSPTTLKKCLETLRKY 91 (313)
Q Consensus 63 ~vv~~GDlf~~~---~~~~~~~~~~~~~l~~l 91 (313)
-++++||.+-.. .........+.+.|+++
T Consensus 120 ~~lftGDtl~~~g~g~~~~~~~~~~~~Sl~~l 151 (248)
T TIGR03413 120 PALFCGDTLFSAGCGRLFEGTPEQMYDSLQRL 151 (248)
T ss_pred CEEEEcCccccCCcCCCCCCCHHHHHHHHHHH
Confidence 489999975432 11112355556666654
No 172
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=32.71 E-value=1.9e+02 Score=23.10 Aligned_cols=21 Identities=19% Similarity=0.510 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhcCCCEEEEcC
Q psy11941 48 SFEEILEQALDQEVDMVLLGG 68 (313)
Q Consensus 48 ~l~~ii~~~~~~~~d~vv~~G 68 (313)
.|.++++.+++.++|.||+.-
T Consensus 56 ~l~~ll~~~~~g~vd~vvv~~ 76 (140)
T cd03770 56 GFNRMIEDIEAGKIDIVIVKD 76 (140)
T ss_pred HHHHHHHHHHcCCCCEEEEec
Confidence 588999999999999888854
No 173
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=32.55 E-value=1.2e+02 Score=27.84 Aligned_cols=67 Identities=15% Similarity=0.210 Sum_probs=42.0
Q ss_pred eEEEEE-eeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHH
Q psy11941 21 TIRIMI-ASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLR 89 (313)
Q Consensus 21 ~mkilh-~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~ 89 (313)
.+.+.. +||+|.....+. ..++.+..+.++++.+++.+....+-.-|+......+.+.+..+.+.+.
T Consensus 90 ~i~i~~~~S~~h~~~~~~~--t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~ 157 (280)
T cd07945 90 VLNLLTKGSLKHCTEQLRK--TPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLS 157 (280)
T ss_pred EEEEEEeCCHHHHHHHHCc--CHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHH
Confidence 444433 688887665332 2356777788999999999988777778843332333444555544444
No 174
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=32.22 E-value=1e+02 Score=23.21 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhcCCCEEEEcCC
Q psy11941 48 SFEEILEQALDQEVDMVLLGGD 69 (313)
Q Consensus 48 ~l~~ii~~~~~~~~d~vv~~GD 69 (313)
..+.+++.+.+.++|+||+.--
T Consensus 90 ~~~~i~~~~~~~~~dliv~G~~ 111 (140)
T PF00582_consen 90 VADAIIEFAEEHNADLIVMGSR 111 (140)
T ss_dssp HHHHHHHHHHHTTCSEEEEESS
T ss_pred cchhhhhccccccceeEEEecc
Confidence 4578999999999998888544
No 175
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=31.69 E-value=2.4e+02 Score=25.64 Aligned_cols=46 Identities=7% Similarity=0.142 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 46 FVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 46 ~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
+..+++.++...+.+++.+++.|-.=....-+.++..++.+...+.
T Consensus 21 ~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~ 66 (292)
T PRK03170 21 FAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEA 66 (292)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHH
Confidence 3568899999999999999998888777677778888888877754
No 176
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=31.69 E-value=2.1e+02 Score=21.61 Aligned_cols=21 Identities=5% Similarity=0.178 Sum_probs=17.6
Q ss_pred HHHHHHHHhcCCCEEEEcCCc
Q psy11941 50 EEILEQALDQEVDMVLLGGDL 70 (313)
Q Consensus 50 ~~ii~~~~~~~~d~vv~~GDl 70 (313)
.++++.+++.++.+|+++.|.
T Consensus 22 ~~v~kai~~gkaklViiA~D~ 42 (99)
T PRK01018 22 KRTIKAIKLGKAKLVIVASNC 42 (99)
T ss_pred HHHHHHHHcCCceEEEEeCCC
Confidence 467777788899999999995
No 177
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=31.51 E-value=2.5e+02 Score=25.48 Aligned_cols=46 Identities=17% Similarity=0.283 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 46 FVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 46 ~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
...+++.++...+.++|.|++.|-.=.....+.++..++.+...+.
T Consensus 18 ~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~ 63 (285)
T TIGR00674 18 FAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDL 63 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHH
Confidence 3468889999889999999998877666667778888888777654
No 178
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=31.33 E-value=1.3e+02 Score=24.18 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHH
Q psy11941 48 SFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRK 90 (313)
Q Consensus 48 ~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~ 90 (313)
..+++++.|.++++|+|.+++=+..+- ...+.+.+.|++
T Consensus 38 ~~e~~v~aa~~~~adiVglS~L~t~~~----~~~~~~~~~l~~ 76 (128)
T cd02072 38 PQEEFIDAAIETDADAILVSSLYGHGE----IDCKGLREKCDE 76 (128)
T ss_pred CHHHHHHHHHHcCCCEEEEeccccCCH----HHHHHHHHHHHH
Confidence 357899999999999999987666553 567777777775
No 179
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=31.09 E-value=1.9e+02 Score=26.10 Aligned_cols=54 Identities=26% Similarity=0.364 Sum_probs=33.3
Q ss_pred EEEeeccccCcccCCcCccchhHHHHHHHHHHH-HhcCCCEEEEcCCcCCCCCCCHHHHHHH
Q psy11941 24 IMIASDIHLGYLETDRERGNDSFVSFEEILEQA-LDQEVDMVLLGGDLFHINKPSPTTLKKC 84 (313)
Q Consensus 24 ilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~-~~~~~d~vv~~GDlf~~~~~~~~~~~~~ 84 (313)
+.+++|+|......-..+ .+++..+.+ ....+|.|++||.-+-.. ++.+.++++
T Consensus 141 v~ilaDV~~kh~~~l~~~------~~~~~~~~a~~~~~aDaviVtG~~TG~~-~~~~~l~~v 195 (254)
T PF03437_consen 141 VKILADVHVKHSSPLATR------DLEEAAKDAVERGGADAVIVTGKATGEP-PDPEKLKRV 195 (254)
T ss_pred eEEEeeechhhcccCCCC------CHHHHHHHHHHhcCCCEEEECCcccCCC-CCHHHHHHH
Confidence 667779987764432211 134445444 567899999999988664 333445543
No 180
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=30.99 E-value=1.1e+02 Score=30.12 Aligned_cols=36 Identities=14% Similarity=0.195 Sum_probs=25.0
Q ss_pred HHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 53 LEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 53 i~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
++.+.+.+||.|+++|=. |.++. +......+.|.++
T Consensus 113 l~~I~~~~PDIILLaGGt-DGG~~--e~~l~NA~~La~~ 148 (463)
T TIGR01319 113 IEAIEESNLDIILFAGGT-DGGEE--ECGIHNAKMLAEH 148 (463)
T ss_pred HHHHhhcCCCEEEEeCCc-CCCch--HHHHHHHHHHHhc
Confidence 344556799999999975 44443 5667777777754
No 181
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=30.80 E-value=2.2e+02 Score=27.76 Aligned_cols=49 Identities=16% Similarity=0.307 Sum_probs=37.2
Q ss_pred CCCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCC
Q psy11941 18 DRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKP 76 (313)
Q Consensus 18 ~~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~ 76 (313)
+..-+.-+.++|=-++. ...++.+++++.+++.++| ++++|=-|+.++.
T Consensus 43 ~~eVvaTiiCGDnYf~e---------n~eea~~~i~~mv~k~~pD-v~iaGPaFNagrY 91 (431)
T TIGR01917 43 DAEIVATVVCGDSFFGE---------NLEEAKAKVLEMIKGANPD-IFIAGPAFNAGRY 91 (431)
T ss_pred CCEEEEEEEECchhhhh---------CHHHHHHHHHHHHHhcCCC-EEEEcCccCCccH
Confidence 44456667777766554 2345678899999999999 7999999999865
No 182
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=30.62 E-value=77 Score=22.91 Aligned_cols=24 Identities=8% Similarity=-0.032 Sum_probs=20.3
Q ss_pred chhHHHHHHHHHHHHhcCCCEEEE
Q psy11941 43 NDSFVSFEEILEQALDQEVDMVLL 66 (313)
Q Consensus 43 ~~~~~~l~~ii~~~~~~~~d~vv~ 66 (313)
++...+++++.+.|++.++++||=
T Consensus 25 ~d~d~Al~eM~e~A~~lGAnAVVG 48 (74)
T TIGR03884 25 DNVDEIVENLREKVKAKGGMGLIA 48 (74)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEE
Confidence 356678999999999999998763
No 183
>PLN02417 dihydrodipicolinate synthase
Probab=30.61 E-value=2.6e+02 Score=25.42 Aligned_cols=45 Identities=7% Similarity=0.097 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHH
Q psy11941 46 FVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRK 90 (313)
Q Consensus 46 ~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~ 90 (313)
++.+++.++...+.+++.|++.|=.=....-+.++..++.+...+
T Consensus 21 ~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~ 65 (280)
T PLN02417 21 LEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVN 65 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHH
Confidence 346889999999999999999887766666777788888776654
No 184
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=30.54 E-value=2.3e+02 Score=21.02 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=19.2
Q ss_pred HHHHHHHHHhcCCCEEEEcCCcC
Q psy11941 49 FEEILEQALDQEVDMVLLGGDLF 71 (313)
Q Consensus 49 l~~ii~~~~~~~~d~vv~~GDlf 71 (313)
..+.++.+++..+..+++++|.-
T Consensus 18 ~kqt~Kai~kg~~~~v~iA~Da~ 40 (84)
T PRK13600 18 LKETLKALKKDQVTSLIIAEDVE 40 (84)
T ss_pred HHHHHHHHhcCCceEEEEeCCCC
Confidence 45677778888999999999985
No 185
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=30.26 E-value=2.3e+02 Score=27.67 Aligned_cols=50 Identities=20% Similarity=0.405 Sum_probs=38.2
Q ss_pred CCCCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCC
Q psy11941 17 DDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKP 76 (313)
Q Consensus 17 ~~~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~ 76 (313)
++..-+.-+.++|=-++. ...++.+++++.+++.++| ++++|=-|+.++.
T Consensus 42 ~~~eVvaTiiCGDnYf~e---------n~eea~~~i~~mv~k~~pD-v~iaGPaFNagrY 91 (431)
T TIGR01918 42 EDAEVVHTVVCGDSFFGE---------NLEEAVARVLEMLKDKEPD-IFIAGPAFNAGRY 91 (431)
T ss_pred cCCEEEEEEEECchhhhh---------CHHHHHHHHHHHHHhcCCC-EEEEcCccCCccH
Confidence 445566677777776554 2345678899999999999 7999999999865
No 186
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=30.14 E-value=2.8e+02 Score=25.24 Aligned_cols=45 Identities=9% Similarity=0.089 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 47 VSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 47 ~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
..++++++...+.+++.|++.|=.=....-+.++..++.+...+.
T Consensus 21 ~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~ 65 (289)
T cd00951 21 DAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEE 65 (289)
T ss_pred HHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHH
Confidence 468899999999999999999987777677778888887766653
No 187
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=29.83 E-value=2.2e+02 Score=20.70 Aligned_cols=25 Identities=24% Similarity=0.189 Sum_probs=19.7
Q ss_pred HHHHHHHHHhcCCCEEEEcCCcCCC
Q psy11941 49 FEEILEQALDQEVDMVLLGGDLFHI 73 (313)
Q Consensus 49 l~~ii~~~~~~~~d~vv~~GDlf~~ 73 (313)
..++++.+.+..+|++++-.++.+.
T Consensus 32 ~~~~~~~~~~~~~d~iiid~~~~~~ 56 (112)
T PF00072_consen 32 GEEALELLKKHPPDLIIIDLELPDG 56 (112)
T ss_dssp HHHHHHHHHHSTESEEEEESSSSSS
T ss_pred HHHHHHHhcccCceEEEEEeeeccc
Confidence 3467777788899999998887763
No 188
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=29.76 E-value=2.5e+02 Score=25.32 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 46 FVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 46 ~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
+..+++.++...+.+++.+++.|-.=.....+.++..++.+...+.
T Consensus 20 ~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~ 65 (284)
T cd00950 20 FDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEA 65 (284)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHH
Confidence 3467889999999999999999887666667778888888877754
No 189
>PRK10116 universal stress protein UspC; Provisional
Probab=29.59 E-value=1.3e+02 Score=23.46 Aligned_cols=18 Identities=33% Similarity=0.445 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCCCEEEE
Q psy11941 49 FEEILEQALDQEVDMVLL 66 (313)
Q Consensus 49 l~~ii~~~~~~~~d~vv~ 66 (313)
.+.+++.+++.++|+||+
T Consensus 91 ~~~I~~~a~~~~~DLiV~ 108 (142)
T PRK10116 91 SEHILEVCRKHHFDLVIC 108 (142)
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 356777777788887666
No 190
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=29.24 E-value=1.5e+02 Score=25.57 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=15.7
Q ss_pred CCCcEEEEcCCCCCCCCCC
Q psy11941 124 ISLPVFTINGNHDDPSGPE 142 (313)
Q Consensus 124 ~~~pv~~I~GNHD~~~~~~ 142 (313)
..+|++++.-+||.....+
T Consensus 88 ~~~p~~~iwDDHDi~~n~~ 106 (228)
T cd07389 88 AQVPTIGIWDDHDIGDNWG 106 (228)
T ss_pred hcCCEEEeccccccccccc
Confidence 4579999999999987543
No 191
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=29.18 E-value=2.9e+02 Score=25.25 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhcC-CCEEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 46 FVSFEEILEQALDQE-VDMVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 46 ~~~l~~ii~~~~~~~-~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
...+++.++...+.+ +|.|++.|=.=....-+.++..++.+...+.
T Consensus 20 ~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~ 66 (290)
T TIGR00683 20 EKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDE 66 (290)
T ss_pred HHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHH
Confidence 346888999989999 9999999877666666778888888877654
No 192
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=28.70 E-value=1.3e+02 Score=28.27 Aligned_cols=35 Identities=23% Similarity=0.287 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHH
Q psy11941 47 VSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETL 88 (313)
Q Consensus 47 ~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l 88 (313)
..+.++-+...+++||+|++.||-+ +++..++.+.
T Consensus 54 ~~~~~~~~~~~~~~Pd~Vlv~GD~~-------~~la~alaA~ 88 (346)
T PF02350_consen 54 LAIIELADVLEREKPDAVLVLGDRN-------EALAAALAAF 88 (346)
T ss_dssp HHHHHHHHHHHHHT-SEEEEETTSH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCc-------hHHHHHHHHH
Confidence 3555666667788999999999986 5566555554
No 193
>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination but this awaits experimental verification.; PDB: 3OBY_A 3E1Y_D 1DT9_A 2KTU_A 2KTV_A 3IR9_A 3E20_H 3OBW_A 3AGJ_F 3MCA_B ....
Probab=28.53 E-value=40 Score=26.32 Aligned_cols=27 Identities=26% Similarity=0.398 Sum_probs=20.8
Q ss_pred HHHHHHHHHhcCCCEEEEcCCcCCCCC
Q psy11941 49 FEEILEQALDQEVDMVLLGGDLFHINK 75 (313)
Q Consensus 49 l~~ii~~~~~~~~d~vv~~GDlf~~~~ 75 (313)
++++.+.+..-.++.++++=|++....
T Consensus 26 ~~eV~~Al~~GaV~~LlI~d~l~~~~~ 52 (113)
T PF03465_consen 26 IEEVKKALEMGAVETLLISDDLFRSRD 52 (113)
T ss_dssp HHHHHHHHHTT-EEEEEEEHHHHTESC
T ss_pred HHHHHHHHHhCCCcEEEEecccccccc
Confidence 456777777778999999999998764
No 194
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=28.43 E-value=1.8e+02 Score=27.78 Aligned_cols=55 Identities=11% Similarity=0.128 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeeeeccCcccccccCCCccCCCCCCCC
Q psy11941 46 FVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNIS 125 (313)
Q Consensus 46 ~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (313)
...++.+.+.+++.++|.||...--|=+... -....+.+.|+ +.+
T Consensus 299 ~~R~~~i~~lv~~~~~DGVI~~~~kfC~~~~--~e~~~lk~~l~---------------------------------e~G 343 (377)
T TIGR03190 299 HTRYDHVLGLAKEYNVQGAIFLQQKFCDPHE--GDYPDLKRHLE---------------------------------ANG 343 (377)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecccCCCcch--hhhHHHHHHHH---------------------------------HCC
Confidence 3467888899999999999998877754322 34444556665 458
Q ss_pred CcEEEEcCCC
Q psy11941 126 LPVFTINGNH 135 (313)
Q Consensus 126 ~pv~~I~GNH 135 (313)
+|++.|-|..
T Consensus 344 IP~L~iE~D~ 353 (377)
T TIGR03190 344 IPTLFLEFDI 353 (377)
T ss_pred CCEEEEecCC
Confidence 9999998854
No 195
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=27.88 E-value=1.9e+02 Score=26.91 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=35.4
Q ss_pred cchhHHHHHHHHHHHHhcCCCEEEE--cCCcCCCCCCCHHHHHHHHHHHHHhc
Q psy11941 42 GNDSFVSFEEILEQALDQEVDMVLL--GGDLFHINKPSPTTLKKCLETLRKYC 92 (313)
Q Consensus 42 ~~~~~~~l~~ii~~~~~~~~d~vv~--~GDlf~~~~~~~~~~~~~~~~l~~l~ 92 (313)
.++.++.|+++++.+++.++++++- .|..+... +.+.++.+.+.|.++.
T Consensus 51 p~~el~~l~~L~~~a~~~~V~Fv~aisPg~~~~~s--~~~d~~~L~~K~~ql~ 101 (306)
T PF07555_consen 51 PEEELAELKELADAAKANGVDFVYAISPGLDICYS--SEEDFEALKAKFDQLY 101 (306)
T ss_dssp -HHHHHHHHHHHHHHHHTT-EEEEEEBGTTT--TS--HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEECcccccccC--cHHHHHHHHHHHHHHH
Confidence 3566778999999999999999866 66665543 4578888888888765
No 196
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=27.67 E-value=1.7e+02 Score=25.25 Aligned_cols=32 Identities=9% Similarity=0.087 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHH
Q psy11941 49 FEEILEQALDQEVDMVLLGGDLFHINKPSPTTLK 82 (313)
Q Consensus 49 l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~ 82 (313)
.+++++.+.+..+|.+|+ |+.+-.-|....+.
T Consensus 26 ~~~~l~~~~~~~pd~vl~--dl~d~~mp~~~Gl~ 57 (207)
T PRK11475 26 QSSFQDAMSRISFSAVIF--SLSAMRSERREGLS 57 (207)
T ss_pred HHHHHHHhccCCCCEEEe--eccccCCCCCCHHH
Confidence 345666667778998776 77665433323444
No 197
>PRK00976 hypothetical protein; Provisional
Probab=27.66 E-value=1.4e+02 Score=28.14 Aligned_cols=17 Identities=29% Similarity=0.638 Sum_probs=14.1
Q ss_pred CCCCcEEEEcCCC-CCCC
Q psy11941 123 NISLPVFTINGNH-DDPS 139 (313)
Q Consensus 123 ~~~~pv~~I~GNH-D~~~ 139 (313)
+.++|+++|||=| +.+.
T Consensus 102 ~s~ip~~~iPGvh~~~~t 119 (326)
T PRK00976 102 ESGIPAVVIPGLHRGSPT 119 (326)
T ss_pred hCCCCEEEeCceecCCCC
Confidence 5689999999999 5555
No 198
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=27.57 E-value=2.2e+02 Score=26.10 Aligned_cols=26 Identities=23% Similarity=0.196 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcC
Q psy11941 46 FVSFEEILEQALDQEVDMVLLGGDLF 71 (313)
Q Consensus 46 ~~~l~~ii~~~~~~~~d~vv~~GDlf 71 (313)
...+.++.+.+++.++|+|+..||.+
T Consensus 74 ~~~~~~l~~~l~~~~pDvV~~~g~~~ 99 (363)
T cd03786 74 AGLLIGLEAVLLEEKPDLVLVLGDTN 99 (363)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCch
Confidence 34556677777888999999999753
No 199
>PRK10799 metal-binding protein; Provisional
Probab=27.25 E-value=86 Score=28.02 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=16.3
Q ss_pred HHHHHHhcCCCEEEEcCCcCCC
Q psy11941 52 ILEQALDQEVDMVLLGGDLFHI 73 (313)
Q Consensus 52 ii~~~~~~~~d~vv~~GDlf~~ 73 (313)
+++.|.+.++| +++|||+-++
T Consensus 178 ~i~~a~~~gaD-~~ITGd~k~h 198 (247)
T PRK10799 178 FIDSAARFGVD-AFITGEVSEQ 198 (247)
T ss_pred HHHHHHHcCCC-EEEECCcchH
Confidence 56667778999 5899998643
No 200
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=27.22 E-value=2.4e+02 Score=21.39 Aligned_cols=53 Identities=13% Similarity=0.186 Sum_probs=28.4
Q ss_pred EEEEEeeccc--cCcccCCcC--ccchhHHHHHHHHHHH-HhcCCCEEEEcCCcCCCC
Q psy11941 22 IRIMIASDIH--LGYLETDRE--RGNDSFVSFEEILEQA-LDQEVDMVLLGGDLFHIN 74 (313)
Q Consensus 22 mkilh~SD~H--lg~~~~~~~--~~~~~~~~l~~ii~~~-~~~~~d~vv~~GDlf~~~ 74 (313)
|||..++|-- +|....+-. .....-.-+.+.++.+ .+.++..|+++-+++..-
T Consensus 1 mkIaVIGD~dtv~GFrLaGi~~~~~~~~~ee~~~~l~~l~~~~d~gII~Ite~~~~~i 58 (100)
T PRK02228 1 MEIAVIGSPEFTTGFRLAGIRKVYEVPDDEKLDEAVEEVLEDDDVGILVMHDDDLEKL 58 (100)
T ss_pred CEEEEEeCHHHHHHHHHcCCceEEeeCCHHHHHHHHHHHhhCCCEEEEEEehhHhHhh
Confidence 7888999832 222222111 0001112234444443 577899999999988653
No 201
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=26.91 E-value=2.9e+02 Score=22.23 Aligned_cols=39 Identities=21% Similarity=0.225 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHH
Q psy11941 48 SFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRK 90 (313)
Q Consensus 48 ~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~ 90 (313)
..+++++.|.++++|+|.++-=+.++ ......+.+.|++
T Consensus 42 p~e~i~~~a~~~~~d~V~lS~~~~~~----~~~~~~~~~~L~~ 80 (137)
T PRK02261 42 SQEEFIDAAIETDADAILVSSLYGHG----EIDCRGLREKCIE 80 (137)
T ss_pred CHHHHHHHHHHcCCCEEEEcCccccC----HHHHHHHHHHHHh
Confidence 36789999999999999997655533 2456777777774
No 202
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=26.84 E-value=3.1e+02 Score=25.35 Aligned_cols=46 Identities=13% Similarity=0.093 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 46 FVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 46 ~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
+..+++.++...+.+++.|++.|=.=....-+.++..++.+...+.
T Consensus 28 ~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~ 73 (309)
T cd00952 28 LDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVET 73 (309)
T ss_pred HHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHH
Confidence 3568899999999999999998877666666778888887776653
No 203
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=26.76 E-value=3.1e+02 Score=25.00 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHh-cCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 46 FVSFEEILEQALD-QEVDMVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 46 ~~~l~~ii~~~~~-~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
...+++.++...+ .+++.|++.|=.=....-+.++...+.+...+.
T Consensus 23 ~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~ 69 (293)
T PRK04147 23 EQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEE 69 (293)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 3568899999999 999999999976666666777888887766654
No 204
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=26.48 E-value=3.5e+02 Score=24.86 Aligned_cols=45 Identities=11% Similarity=0.101 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHH
Q psy11941 46 FVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRK 90 (313)
Q Consensus 46 ~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~ 90 (313)
+..+++.++...+.++|.|++.|=.=....-+.++..++.+...+
T Consensus 27 ~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~ 71 (303)
T PRK03620 27 EAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVE 71 (303)
T ss_pred HHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHH
Confidence 346889999999999999999887766666667788888776664
No 205
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=25.70 E-value=3.6e+02 Score=24.64 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHH
Q psy11941 46 FVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRK 90 (313)
Q Consensus 46 ~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~ 90 (313)
+..+++.++...+.+++.|++.|=.=....-+.++..++.+...+
T Consensus 20 ~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~ 64 (294)
T TIGR02313 20 EEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAID 64 (294)
T ss_pred HHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHH
Confidence 346889999999999999999887666666677888888776654
No 206
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=25.49 E-value=1.5e+02 Score=24.44 Aligned_cols=39 Identities=13% Similarity=0.235 Sum_probs=20.3
Q ss_pred HHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 49 FEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 49 l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
.+.+.+.+.+++||.|+++|.-.+ +....+.+.+.++++
T Consensus 52 ~~~l~~~i~~~kP~vI~v~g~~~~----s~~l~~~v~~~v~~~ 90 (150)
T PF14639_consen 52 MERLKKFIEKHKPDVIAVGGNSRE----SRKLYDDVRDIVEEL 90 (150)
T ss_dssp HHHHHHHHHHH--SEEEE--SSTH----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCeEEEEcCCChh----HHHHHHHHHHHHHHh
Confidence 344555666889999999884322 224455556666543
No 207
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=25.40 E-value=90 Score=27.89 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=15.7
Q ss_pred EEEcCCcCCCC---CCCHHHHHHHHHHHHHh
Q psy11941 64 VLLGGDLFHIN---KPSPTTLKKCLETLRKY 91 (313)
Q Consensus 64 vv~~GDlf~~~---~~~~~~~~~~~~~l~~l 91 (313)
++++||.+-.+ ..-..+...+.+.|+++
T Consensus 122 ~lFtGDtlf~~g~gr~f~g~~~~~~~Sl~kl 152 (251)
T PRK10241 122 YLFCGDTLFSGGCGRLFEGTASQMYQSLKKI 152 (251)
T ss_pred cEEEcCeeccCCcCCCCCCCHHHHHHHHHHH
Confidence 69999955332 11122455566666655
No 208
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=25.00 E-value=2.1e+02 Score=28.20 Aligned_cols=61 Identities=20% Similarity=0.205 Sum_probs=33.4
Q ss_pred CeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhc--CCCEEEEcC-----CcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 20 NTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQ--EVDMVLLGG-----DLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 20 ~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~--~~d~vv~~G-----Dlf~~~~~~~~~~~~~~~~l~~l 91 (313)
..=|+|..+|.+-..- ...+++-+.+.+. ++|.+|++| |-+-.+....+.++++.+.|+.+
T Consensus 179 RaNRfI~s~D~~N~~l-----------~i~e~f~~~l~e~~~~~D~avlSG~q~l~d~y~dg~~~~e~l~~~~~~i~~l 246 (453)
T PRK14039 179 RENRFIATFDHLNFRL-----------FINPAFEQYALEHAGEMDGALISGFHLLLETYPDGSTYREKLEDSLAQLKWW 246 (453)
T ss_pred CCCeEEEecCCCCccc-----------eecHHHHHHHHhhccCCCEEEEechhhhhhhcCCcccHHHHHHHHHHHHHHH
Confidence 3447788888773321 1222333333343 799999999 33322222234566666666654
No 209
>COG3207 DIT1 Pyoverdine/dityrosine biosynthesis protein [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.93 E-value=79 Score=28.84 Aligned_cols=56 Identities=14% Similarity=0.080 Sum_probs=40.1
Q ss_pred CCeEEEEEeeccccCcccCC--cCccchhHHHHHHHHHHHHhcCCCEEEEcCCc--CCCC
Q psy11941 19 RNTIRIMIASDIHLGYLETD--RERGNDSFVSFEEILEQALDQEVDMVLLGGDL--FHIN 74 (313)
Q Consensus 19 ~~~mkilh~SD~Hlg~~~~~--~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDl--f~~~ 74 (313)
.-+|||-++||=|.=...-+ ..--.+...+|+++++.+...+++.|+..||. |...
T Consensus 103 ~PG~ki~I~SDghvFsD~I~Vdddh~s~Y~d~Lr~m~~~i~~~~i~kI~n~e~~d~F~~~ 162 (330)
T COG3207 103 APGAKITICSDGHVFSDLIRVDDDHISAYQDALRLMIEEIGATHIGKIFNLEDVDAFEAQ 162 (330)
T ss_pred CCCCEEEEEeCCceehhhccccchhHHHHHHHHHHHHHHcCCCCccceeecchhHHHhhc
Confidence 34789999999996553321 11123455689999999999999999999974 5443
No 210
>KOG0377|consensus
Probab=24.47 E-value=55 Score=32.01 Aligned_cols=43 Identities=23% Similarity=0.233 Sum_probs=29.5
Q ss_pred EEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCC
Q psy11941 64 VLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 64 vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~ 139 (313)
-|+-||+.|.+..+.+.+--+...+- -.+..++.-.|||+...
T Consensus 196 YvFNGDFVDRGk~siEvLmiL~a~~l---------------------------------v~P~~~~LNRGNHED~m 238 (631)
T KOG0377|consen 196 YVFNGDFVDRGKRSIEVLMILFALYL---------------------------------VYPNAVHLNRGNHEDHM 238 (631)
T ss_pred eeecCchhhccccchhhHHHHHHHHh---------------------------------cCchhhhccCCchHHHH
Confidence 47899999999876655544333322 23457899999998754
No 211
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=24.38 E-value=2.6e+02 Score=25.29 Aligned_cols=46 Identities=13% Similarity=0.133 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 46 FVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 46 ~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
+..+++.++...+.++|.++++|=.=+...-+.++..++.+...+.
T Consensus 21 ~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~ 66 (289)
T PF00701_consen 21 EDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEA 66 (289)
T ss_dssp HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHH
Confidence 4568899999999999999998877666666777888877776653
No 212
>KOG2756|consensus
Probab=24.29 E-value=1.3e+02 Score=27.56 Aligned_cols=60 Identities=22% Similarity=0.352 Sum_probs=31.4
Q ss_pred HhhcccCCCCCeEEEEEeecc------------ccCcccCC-cCccchhHHHHHHHHHHHHhcCCC-EEEEcCCc
Q psy11941 10 KQEEVEYDDRNTIRIMIASDI------------HLGYLETD-RERGNDSFVSFEEILEQALDQEVD-MVLLGGDL 70 (313)
Q Consensus 10 ~~~~~~~~~~~~mkilh~SD~------------Hlg~~~~~-~~~~~~~~~~l~~ii~~~~~~~~d-~vv~~GDl 70 (313)
+++..++....|||-|.|.-. ||-....+ +.|.+-+-..++++-+.+.. .|. .|++.||+
T Consensus 179 s~~~i~F~NS~M~R~L~I~Ev~v~G~Kl~l~tsHLEStr~h~P~r~~qF~~~~~k~~EaIe~-lPnA~ViFGGD~ 252 (349)
T KOG2756|consen 179 SQEIIPFPNSKMMRNLLIVEVNVSGNKLCLMTSHLESTRGHAPERMNQFKMVLKKMQEAIES-LPNATVIFGGDT 252 (349)
T ss_pred ccceeccCcchhhheeEEEEEeecCceEEEEeccccCCCCCChHHHHHHHHHHHHHHHHHHh-CCCceEEEcCcc
Confidence 556677777778877666554 54433222 22222222233443333333 354 47779997
No 213
>PLN02219 probable galactinol--sucrose galactosyltransferase 2
Probab=23.96 E-value=61 Score=33.87 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=12.3
Q ss_pred CCcEEE--EcCCCCCCC
Q psy11941 125 SLPVFT--INGNHDDPS 139 (313)
Q Consensus 125 ~~pv~~--I~GNHD~~~ 139 (313)
+.|||+ -||+||+..
T Consensus 502 GGPIYvSD~PG~Hdf~L 518 (775)
T PLN02219 502 GCAIYVSDKPGNHNFDL 518 (775)
T ss_pred CCcEEEecCCCCccHHH
Confidence 569887 799999865
No 214
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=23.90 E-value=3.1e+02 Score=21.62 Aligned_cols=22 Identities=14% Similarity=0.289 Sum_probs=18.7
Q ss_pred HHHHHHHHHhcCCCEEEEcCCc
Q psy11941 49 FEEILEQALDQEVDMVLLGGDL 70 (313)
Q Consensus 49 l~~ii~~~~~~~~d~vv~~GDl 70 (313)
..++...+.+..+.+|+++.|.
T Consensus 32 ~~e~~Kai~~g~a~LVviA~Dv 53 (116)
T COG1358 32 TNEVTKAIERGKAKLVVIAEDV 53 (116)
T ss_pred HHHHHHHHHcCCCcEEEEecCC
Confidence 4577777888899999999997
No 215
>TIGR02260 benz_CoA_red_B benzoyl-CoA reductase, bcr type, subunit B. This model describes B, or beta, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA.
Probab=23.32 E-value=2.7e+02 Score=27.07 Aligned_cols=27 Identities=11% Similarity=-0.011 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCcCCCC
Q psy11941 48 SFEEILEQALDQEVDMVLLGGDLFHIN 74 (313)
Q Consensus 48 ~l~~ii~~~~~~~~d~vv~~GDlf~~~ 74 (313)
.++.+.+.+++.++|.||+..--|=+.
T Consensus 338 R~~~l~~l~ke~~aDGVI~~~~~~C~~ 364 (413)
T TIGR02260 338 RVDLLEKYINEYEADGLLINSIKSCNS 364 (413)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCCCc
Confidence 577888999999999999988877553
No 216
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=22.97 E-value=2.1e+02 Score=26.16 Aligned_cols=64 Identities=20% Similarity=0.182 Sum_probs=33.8
Q ss_pred EEEeeccccCcccCCcC--c-cchhHHHHHHHHHHHHhcC---CCEEEEcCCcCCCCCCCHHHHHHHHHHHH
Q psy11941 24 IMIASDIHLGYLETDRE--R-GNDSFVSFEEILEQALDQE---VDMVLLGGDLFHINKPSPTTLKKCLETLR 89 (313)
Q Consensus 24 ilh~SD~Hlg~~~~~~~--~-~~~~~~~l~~ii~~~~~~~---~d~vv~~GDlf~~~~~~~~~~~~~~~~l~ 89 (313)
-+|+--+||........ . ......-++++.+.+.+.+ -+-+|++||+=.... + .+++.++..|.
T Consensus 134 ~~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i~~~~~~~~~pvIl~GDfN~~~~-s-~~~~~ml~~l~ 203 (283)
T TIGR03395 134 KFHVIGTHLQAQDSMCSKLGPASIRANQLNEIQDFIDSKNIPKDETVLIGGDLNVNKG-S-NEYHDMFKTLN 203 (283)
T ss_pred EEEEEEeCCCCCcccccccccHHHHHHHHHHHHHHHhhccCCCCceEEEEeeCCCCCC-C-HHHHHHHHHhc
Confidence 47888889986432110 0 1223333445555554332 245899999754432 2 55665554443
No 217
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=22.51 E-value=3.1e+02 Score=26.00 Aligned_cols=49 Identities=8% Similarity=-0.021 Sum_probs=26.1
Q ss_pred CCCCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhc-CCCEEEE
Q psy11941 17 DDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQ-EVDMVLL 66 (313)
Q Consensus 17 ~~~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~-~~d~vv~ 66 (313)
+..+.|.++.+.| +-................=..+++.+++. ++|+|..
T Consensus 4 pGT~s~dv~~~dd-~g~v~~~~~ipt~~v~~~p~~iv~~l~~~~~~dlIa~ 53 (343)
T PF07318_consen 4 PGTKSFDVCGLDD-DGKVIFYFSIPTEEVAKNPSIIVEELEEFGDIDLIAG 53 (343)
T ss_pred CCCCcEEEEEEcc-CCcEEEEeeccHHHhhhCHHHHHHHHHhccCCCEEEe
Confidence 4567889999999 21111111111111111223466777776 9998877
No 218
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=22.36 E-value=1.6e+02 Score=26.38 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=16.7
Q ss_pred HHHHHHhcCCCEEEEcCCcCCC
Q psy11941 52 ILEQALDQEVDMVLLGGDLFHI 73 (313)
Q Consensus 52 ii~~~~~~~~d~vv~~GDlf~~ 73 (313)
+++.+.+.++| +++|||+-++
T Consensus 180 ~~~~a~~~gaD-~~ITGd~k~h 200 (249)
T TIGR00486 180 FIMKALREGVD-AYITGDLSHH 200 (249)
T ss_pred HHHHHHHcCCC-EEEecCCchH
Confidence 56667788999 6899998655
No 219
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=22.22 E-value=4.4e+02 Score=24.23 Aligned_cols=48 Identities=15% Similarity=0.099 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhc
Q psy11941 45 SFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYC 92 (313)
Q Consensus 45 ~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~ 92 (313)
-+++++++++...+.++|.|++.|=.=....-+.++..++.+...+..
T Consensus 23 D~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~ 70 (299)
T COG0329 23 DEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAV 70 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHH
Confidence 345789999999999999999988776666667788888877777643
No 220
>KOG0093|consensus
Probab=21.72 E-value=1.8e+02 Score=24.26 Aligned_cols=72 Identities=8% Similarity=0.111 Sum_probs=42.2
Q ss_pred CCCCeEEEEEeeccccCcccCC----------------------------------cCccchhHHHHHHHHHHHHhcCCC
Q psy11941 17 DDRNTIRIMIASDIHLGYLETD----------------------------------RERGNDSFVSFEEILEQALDQEVD 62 (313)
Q Consensus 17 ~~~~~mkilh~SD~Hlg~~~~~----------------------------------~~~~~~~~~~l~~ii~~~~~~~~d 62 (313)
+-.=|.|+++++|-|.|....- ..+..+..+.++ .+-.+--++++
T Consensus 17 nFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryr-tiTTayyRgam 95 (193)
T KOG0093|consen 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYR-TITTAYYRGAM 95 (193)
T ss_pred cccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhh-HHHHHHhhccc
Confidence 3344889999999999963210 011222223322 33445567899
Q ss_pred EEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 63 MVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 63 ~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
.+|+.=|+.+..+ ..+++.+.-.++.+
T Consensus 96 gfiLmyDitNeeS--f~svqdw~tqIkty 122 (193)
T KOG0093|consen 96 GFILMYDITNEES--FNSVQDWITQIKTY 122 (193)
T ss_pred eEEEEEecCCHHH--HHHHHHHHHHheee
Confidence 9999989887632 24455555455443
No 221
>PLN02355 probable galactinol--sucrose galactosyltransferase 1
Probab=21.70 E-value=66 Score=33.60 Aligned_cols=15 Identities=20% Similarity=0.332 Sum_probs=12.3
Q ss_pred CCcEEE--EcCCCCCCC
Q psy11941 125 SLPVFT--INGNHDDPS 139 (313)
Q Consensus 125 ~~pv~~--I~GNHD~~~ 139 (313)
+.|||+ -||+||+..
T Consensus 510 GGPIYvSD~PG~hdf~L 526 (758)
T PLN02355 510 GCAIYVSDKPGQHDFNL 526 (758)
T ss_pred CCcEEEecCCCCccHHH
Confidence 569887 799998865
No 222
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=21.63 E-value=3.3e+02 Score=25.27 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcC
Q psy11941 46 FVSFEEILEQALDQEVDMVLLGGDLF 71 (313)
Q Consensus 46 ~~~l~~ii~~~~~~~~d~vv~~GDlf 71 (313)
...+.++.+..++.++|+|+.-||.+
T Consensus 72 ~~~~~~l~~~l~~~~pDiv~~~gd~~ 97 (365)
T TIGR00236 72 SNMLEGLEELLLEEKPDIVLVQGDTT 97 (365)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCch
Confidence 34556777778889999999999874
No 223
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=21.59 E-value=3.6e+02 Score=24.46 Aligned_cols=46 Identities=20% Similarity=0.233 Sum_probs=30.5
Q ss_pred EEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcC-CCEEEEcCCcCCCC
Q psy11941 23 RIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQE-VDMVLLGGDLFHIN 74 (313)
Q Consensus 23 kilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~-~d~vv~~GDlf~~~ 74 (313)
.+.+++|+|......... ..+++....+.... +|.|++||--+-..
T Consensus 139 ~v~i~adV~~kh~~~l~~------~~~~e~a~~~~~~~~aDavivtG~~TG~~ 185 (257)
T TIGR00259 139 EVKILADIVVKHAVHLGN------RDLESIALDTVERGLADAVILSGKTTGTE 185 (257)
T ss_pred CcEEEeceeecccCcCCC------CCHHHHHHHHHHhcCCCEEEECcCCCCCC
Confidence 477889999876542111 13556666655554 99999999877654
No 224
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=21.51 E-value=2.9e+02 Score=20.24 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=20.5
Q ss_pred HHHHHHHHHhcCCCEEEEcCCcCCC
Q psy11941 49 FEEILEQALDQEVDMVLLGGDLFHI 73 (313)
Q Consensus 49 l~~ii~~~~~~~~d~vv~~GDlf~~ 73 (313)
+.++.+.++..++.++|++.|.-..
T Consensus 20 ~~~v~k~l~~~~~~lvilA~d~~~~ 44 (95)
T PF01248_consen 20 IKEVLKALKKGKAKLVILAEDCSPD 44 (95)
T ss_dssp HHHHHHHHHTTCESEEEEETTSSSG
T ss_pred hHHHHHHHHcCCCcEEEEcCCCChh
Confidence 4577888888899999999998643
No 225
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=21.49 E-value=93 Score=26.75 Aligned_cols=30 Identities=13% Similarity=0.141 Sum_probs=18.8
Q ss_pred hcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHH
Q psy11941 58 DQEVDMVLLGGDLFHINKPSPTTLKKCLETLR 89 (313)
Q Consensus 58 ~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~ 89 (313)
-+++|.+|+.=|+.+.. +.+.+..+.+.++
T Consensus 70 ~~~ad~iIlVfDvtd~~--Sf~~l~~w~~~i~ 99 (202)
T cd04120 70 YRSAKGIILVYDITKKE--TFDDLPKWMKMID 99 (202)
T ss_pred hcCCCEEEEEEECcCHH--HHHHHHHHHHHHH
Confidence 34799999988887653 2244444444444
No 226
>PF05902 4_1_CTD: 4.1 protein C-terminal domain (CTD); InterPro: IPR008379 There is a unique sequence domain at the C terminus of all known 4.1 proteins, known as the C-terminal domain (CTD). Mammalian CTDs are associated with a growing number of protein-protein interactions, although such activities have yet to be associated with invertebrate CTDs. Mammalian CTDs are generally defined by sequence alignment as encoded by exons 18-21. Comparison of known vertebrate 4.1 proteins with invertebrate 4.1 proteins indicates that mammalian 4.1 exon 19 represents a vertebrate adaptation that extends the sequence of the CTD with a Ser/Thr-rich sequence. The CTD was first described as a 22/24 kDa domain by chymotryptic digestion of erythrocyte 4.1 (4.1R). CTD is thought to represent an independent folding structure which has gained function since the divergence of vertebrates from invertebrates [].; GO: 0003779 actin binding, 0005198 structural molecule activity, 0005856 cytoskeleton
Probab=21.28 E-value=1.3e+02 Score=23.69 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=24.8
Q ss_pred eEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEE
Q psy11941 21 TIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVL 65 (313)
Q Consensus 21 ~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv 65 (313)
.-||++.+|--+.. -.+|..++..|+++.||+-+
T Consensus 70 EKRIvITGD~DIDh-----------DqaLa~aI~eAk~q~Pdm~V 103 (114)
T PF05902_consen 70 EKRIVITGDADIDH-----------DQALAQAIKEAKEQHPDMSV 103 (114)
T ss_pred EEEEEEecCCCcch-----------HHHHHHHHHHHHHhCCCceE
Confidence 45777777765433 34688999999999999754
No 227
>PTZ00063 histone deacetylase; Provisional
Probab=21.09 E-value=4e+02 Score=26.21 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=31.6
Q ss_pred cchhHHHHHHHHHHH-HhcCCCEEEE-cC-Cc-----CCCCCCCHHHHHHHHHHHHH
Q psy11941 42 GNDSFVSFEEILEQA-LDQEVDMVLL-GG-DL-----FHINKPSPTTLKKCLETLRK 90 (313)
Q Consensus 42 ~~~~~~~l~~ii~~~-~~~~~d~vv~-~G-Dl-----f~~~~~~~~~~~~~~~~l~~ 90 (313)
..+...+|+.++..+ .+.+||+||+ +| |. .-.-+.+.+.+.++.+.+++
T Consensus 231 D~~Y~~~f~~ii~~~i~~f~Pd~IvvqaG~D~~~~DpLg~l~Lt~~g~~~~~~~~~~ 287 (436)
T PTZ00063 231 DDSFVDLFKPVISKCVEVYRPGAIVLQCGADSLTGDRLGRFNLTIKGHAACVEFVRS 287 (436)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEECCccccCCCCCCCcccCHHHHHHHHHHHHh
Confidence 345667888887654 4579999987 33 33 33334456777777777763
No 228
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=21.07 E-value=3.4e+02 Score=21.25 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=18.9
Q ss_pred HHHHHHHHhcCCCEEEEcCCcCC
Q psy11941 50 EEILEQALDQEVDMVLLGGDLFH 72 (313)
Q Consensus 50 ~~ii~~~~~~~~d~vv~~GDlf~ 72 (313)
+++++.+++..+.+||+++|.-.
T Consensus 32 ~~v~kaikkgka~LVilA~D~s~ 54 (117)
T TIGR03677 32 NEVTKAVERGIAKLVVIAEDVEP 54 (117)
T ss_pred HHHHHHHHcCCccEEEEeCCCCc
Confidence 46777777889999999999853
No 229
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=20.99 E-value=3.4e+02 Score=24.39 Aligned_cols=11 Identities=18% Similarity=0.519 Sum_probs=9.5
Q ss_pred CCCCcEEEEcC
Q psy11941 123 NISLPVFTING 133 (313)
Q Consensus 123 ~~~~pv~~I~G 133 (313)
+.++|..++||
T Consensus 101 ~~gI~yevvPG 111 (254)
T COG2875 101 ALGIPYEVVPG 111 (254)
T ss_pred HcCCCeEEeCC
Confidence 46899999999
No 230
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=20.94 E-value=3.5e+02 Score=26.06 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcC
Q psy11941 46 FVSFEEILEQALDQEVDMVLLGGDLF 71 (313)
Q Consensus 46 ~~~l~~ii~~~~~~~~d~vv~~GDlf 71 (313)
-.++..+-+...+.+||+|++-||..
T Consensus 78 ~~~i~~~~~vl~~~kPD~VlVhGDT~ 103 (383)
T COG0381 78 GNIIEGLSKVLEEEKPDLVLVHGDTN 103 (383)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcc
Confidence 34555555666688999999999975
No 231
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=20.84 E-value=1.6e+02 Score=28.01 Aligned_cols=38 Identities=16% Similarity=0.073 Sum_probs=25.7
Q ss_pred EEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEE
Q psy11941 25 MIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMV 64 (313)
Q Consensus 25 lh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~v 64 (313)
+-+||+|.....+ ...++.+..+.++++.+++.+..+.
T Consensus 142 ~s~Sd~h~~~n~~--~t~~e~l~~~~~~v~~Ak~~Gl~v~ 179 (347)
T PLN02746 142 ASASESFSKSNIN--CSIEESLVRYREVALAAKKHSIPVR 179 (347)
T ss_pred EecCHHHHHHHhC--CCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 3467888665432 1235666677899999999887764
No 232
>KOG1625|consensus
Probab=20.84 E-value=2.8e+02 Score=28.11 Aligned_cols=45 Identities=20% Similarity=0.251 Sum_probs=33.4
Q ss_pred EEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCC
Q psy11941 24 IMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINK 75 (313)
Q Consensus 24 ilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~ 75 (313)
|+++|-.-.... +-.+.-|.++++.++++++|.+|++|=+.|...
T Consensus 343 ivvasGPyt~sD-------nl~yepL~dll~~v~~~~pdvLIL~GPFlD~~h 387 (600)
T KOG1625|consen 343 IVVASGPYTASD-------NLSYEPLCDLLDYVNAERPDVLILFGPFLDSKH 387 (600)
T ss_pred EEEEecCccCcc-------ccchhHHHHHHHHHhcCCCCEEEEeccccCccC
Confidence 677765543322 234456889999999999999999999988754
No 233
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=20.77 E-value=2.5e+02 Score=28.17 Aligned_cols=61 Identities=10% Similarity=0.112 Sum_probs=33.8
Q ss_pred EeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHH
Q psy11941 26 IASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETL 88 (313)
Q Consensus 26 h~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l 88 (313)
-+||+|+....+ ...++.++.+.+.++.+++.+.+..+-+=++|+....+.+.+..+.+.+
T Consensus 107 ~~Sd~h~~~~l~--~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~ 167 (524)
T PRK12344 107 KSWDLHVTEALR--TTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAA 167 (524)
T ss_pred CCCHHHHHHHcC--CCHHHHHHHHHHHHHHHHHcCCeEEEccccccccccCCHHHHHHHHHHH
Confidence 457888654332 1124556667788888888887754445555565433333333333333
No 234
>PF12404 DUF3663: Peptidase ; InterPro: IPR008330 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family represents the peptidase B group of leucyl aminopeptidases, which are restricted to the gammaproteobacteria. They contain a C-terminal aminopeptidase catalytic domain and an N-terminal domain of unknown function. They are zinc-dependent exopeptidases (3.4.11.1 from EC) and belong to MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF). They selectively release N-terminal amino acid residues from polypeptides and proteins and are involved in the processing, catabolism and degradation of intracellular proteins [, , ]. Leucyl aminopeptidase forms a homohexamer containing two trimers stacked on top of one another []. Each monomer binds two zinc ions. The zinc-binding and catalytic sites are located within the C-terminal catalytic domain []. The same catalytic aminopeptidase domain is found in the other M17 peptidases IPR011356 from INTERPRO. These two groups of aminopeptidases differ by their N-terminal domains. The N-terminal domain in members of IPR011356 from INTERPRO has been implicated in DNA binding [, ] and it is not associated with members of this family which have a different N-terminal domain and therefore are not expected to bind DNA or be involved in transcriptional regulation. In addition, there are related proteins with the same catalytic domain and unique N-terminal sequences unrelated to any of the two N-terminal domains discussed above. For additional information please see [, , , ]. ; GO: 0004177 aminopeptidase activity, 0008235 metalloexopeptidase activity, 0030145 manganese ion binding, 0005737 cytoplasm
Probab=20.76 E-value=1.8e+02 Score=21.29 Aligned_cols=29 Identities=14% Similarity=0.245 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEcCCcCCC
Q psy11941 45 SFVSFEEILEQALDQEVDMVLLGGDLFHI 73 (313)
Q Consensus 45 ~~~~l~~ii~~~~~~~~d~vv~~GDlf~~ 73 (313)
.+...++.-.++..+++..|-++||-++-
T Consensus 36 ~l~~IQrAaRkLd~qGI~~V~L~G~~W~l 64 (77)
T PF12404_consen 36 DLRAIQRAARKLDGQGIKNVALAGEGWDL 64 (77)
T ss_pred chHHHHHHHHHHhhCCCceEEEecCCcCH
Confidence 34567777788888999999999998864
No 235
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=20.72 E-value=1.2e+02 Score=27.73 Aligned_cols=50 Identities=14% Similarity=0.284 Sum_probs=27.8
Q ss_pred HHHhhcccCCCCCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCC
Q psy11941 8 EVKQEEVEYDDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHI 73 (313)
Q Consensus 8 ~~~~~~~~~~~~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~ 73 (313)
-+.|.. ++.+...||.++++---=| ..+.++.+++.++|.++++|+.-+.
T Consensus 50 tIskI~-~lAdDp~mKaIVv~q~vpG---------------t~~af~kIkekRpDIl~ia~~~~ED 99 (275)
T PF12683_consen 50 TISKIV-SLADDPDMKAIVVSQAVPG---------------TAEAFRKIKEKRPDILLIAGEPHED 99 (275)
T ss_dssp HHHHHH-GGGG-TTEEEEEEE-SS------------------HHHHHHHHHH-TTSEEEESS--S-
T ss_pred HHHHHH-HhccCCCccEEEEeCCCcc---------------hHHHHHHHHhcCCCeEEEcCCCcCC
Confidence 345555 4444446666665533222 2356777888899999999998654
No 236
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=20.52 E-value=3.6e+02 Score=20.84 Aligned_cols=36 Identities=11% Similarity=0.103 Sum_probs=23.6
Q ss_pred HHHHHHHHh-cCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHH
Q psy11941 50 EEILEQALD-QEVDMVLLGGDLFHINKPSPTTLKKCLETLRK 90 (313)
Q Consensus 50 ~~ii~~~~~-~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~ 90 (313)
++.++.+.+ .++|+|.++. ++.. ......+.+.+++
T Consensus 28 ~~~~~~~~~~~~pdiv~~S~-~~~~----~~~~~~~~~~ik~ 64 (127)
T cd02068 28 DDIVEDIKELLKPDVVGISL-MTSA----IYEALELAKIAKE 64 (127)
T ss_pred HHHHHHHHHhcCCCEEEEee-cccc----HHHHHHHHHHHHH
Confidence 556666666 8999999996 3322 1345666667775
No 237
>PLN02684 Probable galactinol--sucrose galactosyltransferase
Probab=20.40 E-value=80 Score=32.94 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=12.3
Q ss_pred CCcEEE--EcCCCCCCC
Q psy11941 125 SLPVFT--INGNHDDPS 139 (313)
Q Consensus 125 ~~pv~~--I~GNHD~~~ 139 (313)
+.|||+ -||+||+..
T Consensus 501 GGPIYvSD~PG~Hdf~L 517 (750)
T PLN02684 501 GGPLYVSDAPGKHNFEL 517 (750)
T ss_pred CCceEEecCCCCccHHH
Confidence 569887 799999865
No 238
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=20.26 E-value=3.5e+02 Score=26.32 Aligned_cols=74 Identities=20% Similarity=0.258 Sum_probs=0.0
Q ss_pred EEEEeec-cccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcC----------CCCCCCHHHHHHHHHHHHHh
Q psy11941 23 RIMIASD-IHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLF----------HINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 23 kilh~SD-~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf----------~~~~~~~~~~~~~~~~l~~l 91 (313)
||++++| .++|. .....-+++.+.+.+.++|.+++.|+.. .......+..+.+...++
T Consensus 355 ~i~VlG~m~elG~---------~~~~~h~~~~~~~~~~~~d~v~~~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 423 (453)
T PRK10773 355 RVMVVGDMAELGA---------ESEACHRQVGEAAKAAGIDKVLSVGKLSHAISEASGVGEHFADKTALIARLKALLA-- 423 (453)
T ss_pred EEEEECChhhcch---------HHHHHHHHHHHHHHHcCCCEEEEEChhHHHHHHhcCCCeeECCHHHHHHHHHHhhc--
Q ss_pred ccCCCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCC
Q psy11941 92 CIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDP 138 (313)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~ 138 (313)
...+-++++.|.+...
T Consensus 424 -------------------------------~gd~~~vL~Kgsr~~~ 439 (453)
T PRK10773 424 -------------------------------EHQVITILVKGSRSAA 439 (453)
T ss_pred -------------------------------CCCceEEEEEeCCcCC
No 239
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=20.22 E-value=5.1e+02 Score=23.48 Aligned_cols=45 Identities=16% Similarity=0.087 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhc-CCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 47 VSFEEILEQALDQ-EVDMVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 47 ~~l~~ii~~~~~~-~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
..+++.++...+. +++.|++.|=.=....-+.++...+.+...+.
T Consensus 21 ~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~ 66 (288)
T cd00954 21 DVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEA 66 (288)
T ss_pred HHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHH
Confidence 4688899998888 99999999866666666677888887766653
No 240
>PLN02982 galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds
Probab=20.19 E-value=84 Score=33.12 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=12.4
Q ss_pred CCcEEE--EcCCCCCCC
Q psy11941 125 SLPVFT--INGNHDDPS 139 (313)
Q Consensus 125 ~~pv~~--I~GNHD~~~ 139 (313)
+.|||+ -||+||+..
T Consensus 614 GGPIYvSD~pG~Hdf~l 630 (865)
T PLN02982 614 GGPVYVSDSVGGHDFDL 630 (865)
T ss_pred CCCEEEeeCCCCccHHH
Confidence 569887 899999865
Done!