Query psy11941
Match_columns 313
No_of_seqs 138 out of 1730
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 22:53:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11941.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11941hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t1i_A Double-strand break rep 100.0 7.7E-47 2.6E-51 361.4 29.1 298 16-313 27-328 (431)
2 4fbk_A DNA repair and telomere 100.0 1.7E-46 6E-51 360.1 30.2 299 15-313 70-372 (472)
3 4fbw_A DNA repair protein RAD3 100.0 2.2E-46 7.7E-51 356.8 28.0 298 16-313 8-309 (417)
4 2q8u_A Exonuclease, putative; 100.0 8.5E-32 2.9E-36 251.1 22.5 243 18-312 15-284 (336)
5 3tho_B Exonuclease, putative; 100.0 1.1E-31 3.7E-36 254.6 19.2 240 22-312 1-266 (379)
6 1ii7_A MRE11 nuclease; RAD50, 100.0 2.3E-31 7.8E-36 248.1 20.9 245 22-312 1-273 (333)
7 3av0_A DNA double-strand break 100.0 3.6E-31 1.2E-35 251.6 18.9 246 17-312 16-269 (386)
8 3ib7_A ICC protein; metallopho 99.9 2.9E-22 1E-26 184.6 21.1 234 17-310 21-282 (330)
9 3d03_A Phosphohydrolase; glyce 99.9 1.7E-22 5.7E-27 181.3 16.6 232 22-313 1-264 (274)
10 1uf3_A Hypothetical protein TT 99.8 8.3E-21 2.9E-25 165.5 11.7 201 20-306 4-227 (228)
11 2yvt_A Hypothetical protein AQ 99.8 1E-19 3.5E-24 162.3 14.9 208 20-303 4-258 (260)
12 2xmo_A LMO2642 protein; phosph 99.8 2.3E-18 7.9E-23 165.6 20.3 240 17-307 35-333 (443)
13 1z2w_A Vacuolar protein sortin 99.8 2.8E-19 9.7E-24 153.5 8.3 175 15-309 4-180 (192)
14 2nxf_A Putative dimetal phosph 99.8 4.5E-18 1.6E-22 155.2 13.3 238 19-311 3-318 (322)
15 2a22_A Vacuolar protein sortin 99.8 3E-18 1E-22 149.8 10.4 89 216-309 114-204 (215)
16 2kkn_A Uncharacterized protein 99.7 1.5E-17 5E-22 141.4 11.2 76 216-306 103-178 (178)
17 1ute_A Protein (II purple acid 99.7 2E-17 6.9E-22 150.4 11.4 242 19-308 4-292 (313)
18 1s3l_A Hypothetical protein MJ 99.7 3.9E-17 1.4E-21 140.1 11.9 162 21-301 25-187 (190)
19 1su1_A Hypothetical protein YF 99.7 1.3E-15 4.3E-20 132.5 14.5 179 10-307 14-196 (208)
20 1nnw_A Hypothetical protein; s 99.6 2.1E-16 7.1E-21 140.6 8.6 212 21-308 1-226 (252)
21 3qfm_A SAPH, putative uncharac 99.6 8.5E-16 2.9E-20 138.8 12.0 208 19-306 9-229 (270)
22 3ck2_A Conserved uncharacteriz 99.6 5.7E-15 2E-19 124.7 15.5 89 216-312 78-167 (176)
23 3rqz_A Metallophosphoesterase; 99.6 2.4E-15 8.1E-20 133.8 8.7 197 20-307 2-221 (246)
24 3rl5_A Metallophosphoesterase 99.6 3.4E-14 1.2E-18 129.4 15.4 209 18-295 56-291 (296)
25 3tgh_A Glideosome-associated p 99.6 2.6E-14 8.7E-19 133.2 13.3 237 20-305 2-292 (342)
26 1xm7_A Hypothetical protein AQ 99.4 1.1E-13 3.7E-18 118.7 6.3 81 22-139 2-85 (195)
27 1xzw_A Purple acid phosphatase 99.3 2.3E-11 7.9E-16 116.4 12.8 184 19-257 124-329 (426)
28 2qfp_A Purple acid phosphatase 99.2 6.1E-11 2.1E-15 113.3 13.2 184 19-257 117-322 (424)
29 1hp1_A 5'-nucleotidase; metall 99.2 1.6E-10 5.6E-15 113.2 13.3 191 18-256 5-233 (516)
30 3qfk_A Uncharacterized protein 99.1 9.4E-10 3.2E-14 108.1 17.3 207 18-273 16-266 (527)
31 3ive_A Nucleotidase; structura 99.1 5.4E-10 1.9E-14 109.4 14.2 206 19-273 4-254 (509)
32 2z1a_A 5'-nucleotidase; metal- 99.0 1.1E-09 3.7E-14 108.3 12.4 189 18-256 26-244 (552)
33 2wdc_A SOXB, sulfur oxidation 99.0 2.1E-09 7.3E-14 106.3 13.8 175 45-273 103-307 (562)
34 4h2g_A 5'-nucleotidase; dimer, 99.0 1.6E-09 5.4E-14 107.0 11.9 189 18-255 22-245 (546)
35 3jyf_A 2',3'-cyclic nucleotide 99.0 3.9E-08 1.3E-12 91.3 19.7 56 19-74 6-66 (339)
36 3gve_A YFKN protein; alpha-bet 98.9 2.6E-08 9E-13 92.5 15.9 56 19-74 9-69 (341)
37 3ztv_A NAD nucleotidase, NADN; 98.9 2.2E-08 7.5E-13 99.4 15.5 188 18-255 9-231 (579)
38 4h1s_A 5'-nucleotidase; hydrol 98.6 1.7E-07 5.9E-12 92.0 12.5 185 21-255 3-223 (530)
39 3c9f_A 5'-nucleotidase; 2',3'- 98.6 8.2E-08 2.8E-12 94.8 7.9 57 18-74 12-74 (557)
40 1g5b_A Serine/threonine protei 98.5 3.9E-08 1.3E-12 85.5 2.5 46 19-76 10-56 (221)
41 2z06_A Putative uncharacterize 98.5 5.8E-06 2E-10 73.2 15.8 169 22-258 1-178 (252)
42 2yeq_A Apased, PHOD, alkaline 98.4 1.8E-05 6E-10 77.7 19.9 41 20-73 115-155 (527)
43 1t71_A Phosphatase, conserved 98.4 5E-06 1.7E-10 74.9 14.7 174 20-258 3-191 (281)
44 2qjc_A Diadenosine tetraphosph 98.4 1.9E-07 6.3E-12 83.6 4.4 44 22-77 19-63 (262)
45 2dfj_A Diadenosinetetraphospha 98.3 3.5E-07 1.2E-11 82.7 4.0 69 22-139 1-70 (280)
46 1t70_A Phosphatase; crystal, X 98.2 2.7E-05 9.3E-10 69.1 15.2 170 22-258 1-181 (255)
47 2ie4_C PP2A-alpha;, serine/thr 98.1 3E-06 1E-10 77.5 6.5 74 21-139 49-122 (309)
48 3h63_A Serine/threonine-protei 98.1 5.7E-06 2E-10 75.7 8.1 78 17-139 55-133 (315)
49 2z72_A Protein-tyrosine-phosph 98.1 2.8E-06 9.7E-11 78.8 5.6 53 20-84 69-129 (342)
50 1fjm_A Protein serine/threonin 98.1 5E-06 1.7E-10 76.6 6.5 74 21-139 56-129 (330)
51 1wao_1 Serine/threonine protei 98.0 7.2E-06 2.4E-10 79.2 7.3 78 17-139 208-286 (477)
52 3icf_A PPT, serine/threonine-p 98.0 1.4E-05 4.7E-10 73.7 7.9 75 20-139 62-137 (335)
53 3e7a_A PP-1A, serine/threonine 98.0 8.9E-06 3E-10 73.9 6.5 73 22-139 56-128 (299)
54 3ll8_A Serine/threonine-protei 97.9 1.6E-05 5.5E-10 73.7 6.4 74 21-139 69-142 (357)
55 1aui_A Calcineurin, serine/thr 97.8 2.2E-05 7.7E-10 75.8 6.4 74 21-139 82-155 (521)
56 3e0j_A DNA polymerase subunit 97.5 0.00022 7.4E-09 68.5 8.3 84 20-140 199-311 (476)
57 3flo_A DNA polymerase alpha su 95.4 0.033 1.1E-06 53.2 7.7 49 20-75 146-195 (460)
58 1g5b_A Serine/threonine protei 72.2 1.2 4.1E-05 37.5 1.2 30 241-274 177-206 (221)
59 3w01_A Heptaprenylglyceryl pho 64.8 20 0.00069 30.8 7.4 49 54-139 30-78 (235)
60 3vzx_A Heptaprenylglyceryl pho 59.0 18 0.00061 30.9 6.1 50 53-139 24-73 (228)
61 4dpp_A DHDPS 2, dihydrodipicol 55.5 35 0.0012 31.2 7.7 80 12-91 22-124 (360)
62 2pjk_A 178AA long hypothetical 55.2 21 0.00072 29.1 5.7 42 43-84 63-106 (178)
63 3pzy_A MOG; ssgcid, seattle st 54.5 29 0.00098 27.8 6.3 38 47-84 53-91 (164)
64 3men_A Acetylpolyamine aminohy 49.1 49 0.0017 30.3 7.6 49 42-90 273-328 (362)
65 3q9b_A Acetylpolyamine amidohy 40.0 51 0.0017 29.9 6.2 49 42-90 255-310 (341)
66 1mjh_A Protein (ATP-binding do 39.5 1E+02 0.0034 23.4 7.3 19 49-67 109-127 (162)
67 3ew8_A HD8, histone deacetylas 37.4 1.1E+02 0.0037 28.2 8.0 48 43-90 238-293 (388)
68 1jmv_A USPA, universal stress 37.1 51 0.0017 24.5 5.1 21 49-69 91-111 (141)
69 4e7p_A Response regulator; DNA 36.4 30 0.001 26.1 3.6 56 17-72 16-78 (150)
70 2qjc_A Diadenosine tetraphosph 35.1 29 0.001 29.8 3.7 42 242-297 196-239 (262)
71 3j21_Z 50S ribosomal protein L 33.8 1.3E+02 0.0044 21.5 6.9 21 49-69 20-40 (99)
72 1qv9_A F420-dependent methylen 32.8 1.3E+02 0.0043 26.0 7.0 71 44-159 48-118 (283)
73 3cpr_A Dihydrodipicolinate syn 30.8 2E+02 0.0067 25.2 8.5 46 46-91 36-81 (304)
74 3aon_B V-type sodium ATPase su 29.9 55 0.0019 24.6 4.0 51 20-74 1-58 (115)
75 4hwg_A UDP-N-acetylglucosamine 29.8 85 0.0029 28.5 6.1 28 45-72 79-106 (385)
76 1xky_A Dihydrodipicolinate syn 29.0 1.7E+02 0.0059 25.5 7.8 46 46-91 32-77 (301)
77 3cpq_A 50S ribosomal protein L 28.8 1.1E+02 0.0038 22.5 5.5 22 49-70 26-47 (110)
78 2dum_A Hypothetical protein PH 28.7 1.8E+02 0.0063 22.1 7.3 19 49-67 106-124 (170)
79 1w41_A 50S ribosomal protein L 28.6 1.5E+02 0.0052 21.2 6.2 21 49-69 21-41 (101)
80 3fdx_A Putative filament prote 28.4 1.4E+02 0.0049 21.8 6.4 20 48-67 94-113 (143)
81 3iz5_H 60S ribosomal protein L 28.4 1.1E+02 0.0036 26.5 5.9 35 49-89 132-166 (258)
82 3tnj_A Universal stress protei 28.3 85 0.0029 23.4 5.1 19 49-67 98-116 (150)
83 3l21_A DHDPS, dihydrodipicolin 27.9 2E+02 0.0068 25.2 8.0 46 46-91 35-80 (304)
84 2wkj_A N-acetylneuraminate lya 27.6 1.8E+02 0.006 25.5 7.6 46 46-91 31-76 (303)
85 4a69_A Histone deacetylase 3,; 27.6 1.8E+02 0.0062 26.5 7.8 49 42-90 229-285 (376)
86 3flu_A DHDPS, dihydrodipicolin 27.2 1.9E+02 0.0067 25.1 7.8 46 46-91 27-72 (297)
87 3ngf_A AP endonuclease, family 26.3 1E+02 0.0035 25.9 5.7 49 42-92 88-137 (269)
88 2yxg_A DHDPS, dihydrodipicolin 26.3 2E+02 0.0067 24.9 7.6 46 46-91 20-65 (289)
89 2ehh_A DHDPS, dihydrodipicolin 26.2 1.9E+02 0.0066 25.1 7.5 46 46-91 20-65 (294)
90 2ojp_A DHDPS, dihydrodipicolin 26.1 1.9E+02 0.0064 25.1 7.5 46 46-91 21-66 (292)
91 3max_A HD2, histone deacetylas 25.7 2.4E+02 0.0082 25.7 8.2 48 43-90 229-284 (367)
92 3ot5_A UDP-N-acetylglucosamine 25.5 1.5E+02 0.005 27.0 6.9 27 45-71 99-125 (403)
93 2z08_A Universal stress protei 25.5 2E+02 0.0067 20.9 6.8 19 49-67 88-106 (137)
94 3b4u_A Dihydrodipicolinate syn 25.5 1.9E+02 0.0065 25.1 7.4 46 46-91 23-68 (294)
95 1o5k_A DHDPS, dihydrodipicolin 25.3 1.8E+02 0.0063 25.4 7.3 46 46-91 32-77 (306)
96 2lbw_A H/ACA ribonucleoprotein 24.8 1.3E+02 0.0046 22.4 5.4 23 50-72 26-48 (121)
97 3a5f_A Dihydrodipicolinate syn 24.8 1.9E+02 0.0065 25.1 7.2 46 46-91 21-66 (291)
98 4a17_F RPL7A, 60S ribosomal pr 24.5 1.8E+02 0.0062 25.1 6.7 23 49-71 129-151 (255)
99 2vqm_A HD4, histone deacetylas 24.4 1.5E+02 0.0052 27.4 6.8 49 43-91 261-319 (413)
100 3vk5_A MOEO5; TIM barrel, tran 24.3 1.5E+02 0.0053 26.0 6.3 57 48-139 54-114 (286)
101 3daq_A DHDPS, dihydrodipicolin 24.3 2E+02 0.0067 25.0 7.2 45 47-91 23-67 (292)
102 3fkr_A L-2-keto-3-deoxyarabona 24.2 1.6E+02 0.0055 25.9 6.7 46 46-91 28-73 (309)
103 1f6k_A N-acetylneuraminate lya 24.1 2.2E+02 0.0075 24.7 7.5 46 46-91 23-69 (293)
104 3v7e_A Ribosome-associated pro 24.0 1.1E+02 0.0037 21.2 4.5 23 49-71 16-38 (82)
105 2v9d_A YAGE; dihydrodipicolini 23.9 1.9E+02 0.0066 25.8 7.2 46 46-91 51-96 (343)
106 3qze_A DHDPS, dihydrodipicolin 23.8 1.8E+02 0.0062 25.6 7.0 46 46-91 43-88 (314)
107 2r8w_A AGR_C_1641P; APC7498, d 23.7 1.9E+02 0.0064 25.8 7.1 46 46-91 54-99 (332)
108 2f6u_A GGGPS, (S)-3-O-geranylg 23.5 2.5E+02 0.0086 23.7 7.5 50 51-137 24-73 (234)
109 3qfe_A Putative dihydrodipicol 23.4 2E+02 0.0069 25.4 7.2 46 46-91 31-76 (318)
110 3tak_A DHDPS, dihydrodipicolin 23.2 2.3E+02 0.0079 24.5 7.5 46 46-91 21-66 (291)
111 1zz1_A Histone deacetylase-lik 22.9 1.7E+02 0.0057 26.7 6.6 51 42-92 238-296 (369)
112 3s5o_A 4-hydroxy-2-oxoglutarat 22.8 1.9E+02 0.0065 25.3 6.9 46 46-91 34-79 (307)
113 3jyw_G 60S ribosomal protein L 22.4 1E+02 0.0034 23.1 4.2 23 49-71 30-52 (113)
114 3m5v_A DHDPS, dihydrodipicolin 22.3 2.1E+02 0.0071 25.0 7.0 46 46-91 27-72 (301)
115 2xzm_U Ribosomal protein L7AE 22.0 2.4E+02 0.0082 21.3 6.4 22 50-71 30-51 (126)
116 3iz5_f 60S ribosomal protein L 21.8 2.2E+02 0.0074 21.0 6.0 21 50-70 32-52 (112)
117 1iv0_A Hypothetical protein; r 21.7 2.2E+02 0.0076 20.4 5.9 45 44-90 35-83 (98)
118 3si9_A DHDPS, dihydrodipicolin 21.7 2E+02 0.0068 25.4 6.8 46 46-91 42-87 (315)
119 2yxb_A Coenzyme B12-dependent 21.6 1.6E+02 0.0055 23.1 5.6 39 48-90 57-95 (161)
120 3e96_A Dihydrodipicolinate syn 21.6 1.2E+02 0.0041 26.8 5.3 46 46-91 32-77 (316)
121 3nkl_A UDP-D-quinovosamine 4-d 21.5 1.6E+02 0.0055 21.8 5.5 51 50-138 55-105 (141)
122 3dzc_A UDP-N-acetylglucosamine 21.5 1.8E+02 0.0062 26.2 6.7 27 45-71 96-122 (396)
123 3na8_A Putative dihydrodipicol 21.0 1.7E+02 0.0059 25.8 6.2 46 46-91 44-89 (315)
124 2vo9_A EAD500, L-alanyl-D-glut 20.9 79 0.0027 25.7 3.6 28 41-68 33-60 (179)
125 2jz7_A Selenium binding protei 20.9 92 0.0032 21.9 3.4 22 44-65 32-53 (81)
126 1viz_A PCRB protein homolog; s 20.6 3E+02 0.01 23.3 7.4 34 51-91 24-57 (240)
127 3rcm_A TATD family hydrolase; 20.4 1.8E+02 0.006 25.3 6.1 36 49-91 19-54 (287)
128 2rfg_A Dihydrodipicolinate syn 20.2 1.9E+02 0.0063 25.3 6.2 46 46-91 20-65 (297)
129 2g2c_A Putative molybdenum cof 20.0 82 0.0028 25.0 3.5 27 45-71 54-80 (167)
No 1
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=100.00 E-value=7.7e-47 Score=361.44 Aligned_cols=298 Identities=48% Similarity=0.877 Sum_probs=246.9
Q ss_pred CCCCCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCC
Q psy11941 16 YDDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGD 95 (313)
Q Consensus 16 ~~~~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~ 95 (313)
.+..++|||+|+||+|+|.......+..+...+|+++++.++++++|+||++||+||...++.+++..+.+.|++++.++
T Consensus 27 ~~~~~~mrilhiSDlHLg~~~~~~~~~~d~~~~l~~ll~~~~~~~~D~VliaGDlfd~~~~~~~~~~~~~~~L~r~~~~~ 106 (431)
T 3t1i_A 27 LDDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGDLFHENKPSRKTLHTCLELLRKYCMGD 106 (431)
T ss_dssp CCGGGEEEEEEECCCCBTTTSSCTTTTTHHHHHHHHHHHHHHHTTCSEEEECSCCBSSSSCCHHHHHHHHHHHHHHHBCS
T ss_pred CCCCCCEEEEEEeccCCCCcccccchhhhHHHHHHHHHHHHhhcCCCEEEEcCccccCCCCCHHHHHHHHHHHHHHhccC
Confidence 36677999999999999998777778889999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeeccCccccccc---CCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEecccccCCceeeec
Q psy11941 96 RSVFIDVISDPKLVMCN---DHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNP 172 (313)
Q Consensus 96 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 172 (313)
..+++|+++|.+.+|.+ ..|||+||+++.++|||+|+||||.+.+.+..++++++...++++++++....+.+.+.|
T Consensus 107 ~~~~~~~lsd~~~~~~~~~~~~~ny~d~n~~~~ipV~~I~GNHD~~~g~~~l~~~~lL~~~glv~~fg~~~~~e~i~~~P 186 (431)
T 3t1i_A 107 RPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISIPVFSIHGNHDDPTGADALCALDILSCAGFVNHFGRSMSVEKIDISP 186 (431)
T ss_dssp SCCCCEECSCC------------------CCBCSCEEECCCSSSCCBTTTTBCHHHHHHHHTSEEECCCCCCSSCEEECC
T ss_pred CcccceeccchhhccccccccccccccccccCCCcEEEEccCCCCcccccccCHHHHhccCCcEEEECCcCcccceeeEE
Confidence 99999999998777764 579999999999999999999999998766677889999999999998877777777889
Q ss_pred EEEeeCCeEEEEEecCCCchHHHHHHhhhcchhccCCC-CCCCcceEEEeeccccCCCCcCccccccCCCcccEEEeCCc
Q psy11941 173 LIIQKNETKVAIFGLGYVKDERLCNMIKHNKVKYMKPT-DDKDIIYILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHE 251 (313)
Q Consensus 173 ~~l~~~~~~~~i~gl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Ilv~H~~~~~~~~~~~~~~~~~~~~~d~v~~GH~ 251 (313)
+.+++++.++.+||+||..+.++.....+..++++.|. ..++.++|+++|+.....+...+++..+++.++|||++||+
T Consensus 187 v~l~~g~~~valyGl~~~~~~~l~~~~~~~~v~~~~p~~~~~~~~~Ilv~H~~~~~~g~~~~ip~~l~~~~~Dyv~lGH~ 266 (431)
T 3t1i_A 187 VLLQKGSTKIALYGLGSIPDERLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDLVIWGHE 266 (431)
T ss_dssp EEEEETTEEEEEEEECCCCHHHHHHHHHTTCEEECCCSSCGGGEEEEEEECSCCSCSSSSSSCCGGGSCTTCCEEEECSC
T ss_pred EEEecCCEeEEEEeCCCCCHHHHhhhhccccceeecccccCCCceEEEEECCCccCCCccccCCHhHhhCCCCEEEeccc
Confidence 99999999999999999999888877665555555553 12345899999998876666678888888889999999999
Q ss_pred cCccccCCCCCCCcccEEecCCCceeccccCccccccEEEEEEeCCceeEEEEeCCCCCCCC
Q psy11941 252 HECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPRSLETVRPFV 313 (313)
Q Consensus 252 H~~~~~~~~~~~~~~~i~~~GS~~~~~~~e~~~~~~g~~vv~~~~~~~~~~~i~l~~~r~~~ 313 (313)
|.++..+..+..++.+++||||+.+++|++++.++++|++++++++.++++++|++++|||+
T Consensus 267 H~~~~~~~~~~~~~~~i~yPGS~~~~s~~e~E~~~k~~~lvei~~~~~~ve~i~l~~~R~f~ 328 (431)
T 3t1i_A 267 HECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIPLHTVRQFF 328 (431)
T ss_dssp CSCEEEEEECTTTCCEEEECCCSSCCSCCHHHHSCCEEEEEEEETTEEEEEEEECSSSCCEE
T ss_pred ccccccccccCCCCEEEEeCCCCcccCcCcccCCCCEEEEEEEECCEEEEEEEECCCcceEE
Confidence 99998643223356799999999999999765578999999999999999999999999984
No 2
>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A*
Probab=100.00 E-value=1.7e-46 Score=360.14 Aligned_cols=299 Identities=47% Similarity=0.852 Sum_probs=252.3
Q ss_pred cCCCCCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccC
Q psy11941 15 EYDDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIG 94 (313)
Q Consensus 15 ~~~~~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~ 94 (313)
+.++.++|||+|+||+|+|....+..+..+...+|+++++.+.++++|+||++||+||...++.+++..+++.|++++.+
T Consensus 70 ~~~~~~~mrilhiSDlHLG~~~~~~~~~~d~~~~l~~lv~~~~~~~~D~VliaGDLfd~~~ps~~a~~~~~~~Lr~~~~g 149 (472)
T 4fbk_A 70 SAGSENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERDVDMILLGGDIFHDNKPSRKALYQALRSLRLNCLG 149 (472)
T ss_dssp ---CTTCEEEEEECCCCBTTTTTCTTTTTHHHHHHHHHHHHHHHTTCSEEEECSCSBSSSSCCHHHHHHHHHHHHHHHBS
T ss_pred CCCCCCCeEEEEEecccCCCcccCcccchhHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCHHHHHHHHHHHHHhccc
Confidence 34677899999999999998877777788999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeeccCcccccc---cCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEecccccCCceeee
Q psy11941 95 DRSVFIDVISDPKLVMC---NDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLN 171 (313)
Q Consensus 95 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 171 (313)
+.-+.||+|+|...+|. -..+||+||+++.++|||+|+||||.+.+....++.++|...+++++++.+...+.+.+.
T Consensus 150 ~~~~~~e~L~d~~~~~~~~~~~~vn~~dp~~~~gIpVf~I~GNHD~~~~~~~~s~~~LL~~~g~v~l~g~~~~~d~i~~~ 229 (472)
T 4fbk_A 150 DKPCELELLSDTSLTTGDTAVCNINYLDPNINVAIPVFSIHGNHDDPSGDGRYSALDILQVTGLVNYFGRVPENDNIVVS 229 (472)
T ss_dssp SCCCCCEEEEEC-----CCCSCSSSTTCTTBCBSSCEEECCCCCCSCCC--CCCHHHHHHHTTSCEECCCCSCSSSEEEC
T ss_pred CCcchheecchhhhhcccccccccccccccccCCCcEEEEecCCCCccccccccHHHHhccCCcEEEeCCcccCCceeEE
Confidence 99999999998876652 246899999999999999999999998865445688999999999899887766777888
Q ss_pred cEEEeeCCeEEEEEecCCCchHHHHHHhhhcchhccCCC-CCCCcceEEEeeccccCCCCcCccccccCCCcccEEEeCC
Q psy11941 172 PLIIQKNETKVAIFGLGYVKDERLCNMIKHNKVKYMKPT-DDKDIIYILVLHQNRPERGTVKNIAEDSIPSFFHFILWGH 250 (313)
Q Consensus 172 ~~~l~~~~~~~~i~gl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Ilv~H~~~~~~~~~~~~~~~~~~~~~d~v~~GH 250 (313)
|+.+++|+.++.|||+||..++++.....+..+.+..|. ...+.++|+++|++....+...+++..+++.++|||++||
T Consensus 230 pv~l~kg~~~valyGl~y~~d~rl~r~~~e~~v~~~~p~~~~~~~~nIlvlH~~~~~~~~~~yipe~ll~~g~DyValGH 309 (472)
T 4fbk_A 230 PILLQKGFTKLALYGISNVRDERLYHSFRENKVKFLRPDLYRDEWFNLLTVHQNHSAHTPTSYLPESFIQDFYDFVLWGH 309 (472)
T ss_dssp CEEEEETTEEEEEEECCCCCHHHHHHHHHTTCEEEEEESTTGGGEEEEEEEESCSCCSSTTSSCCGGGSCTTCSEEEEES
T ss_pred EEEEEeCCceEEEEecCCCchhhhhhhhhhhhhhhhCcccccCCceEEEEecCCccCCCccccCChhhhhcCCCEEEecC
Confidence 999999999999999999998887766665555554442 1235689999999987766667888888888999999999
Q ss_pred ccCccccCCCCCCCcccEEecCCCceeccccCccccccEEEEEEeCCceeEEEEeCCCCCCCC
Q psy11941 251 EHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPRSLETVRPFV 313 (313)
Q Consensus 251 ~H~~~~~~~~~~~~~~~i~~~GS~~~~~~~e~~~~~~g~~vv~~~~~~~~~~~i~l~~~r~~~ 313 (313)
+|.++..+..+..++.+++|||||.++++++++.++++|++++++++.++++++|++++|||+
T Consensus 310 ~H~~~~~~~~~~~~g~~ivyPGS~~~~s~~e~E~~~kg~~lveI~~~~v~ve~I~L~t~Rpf~ 372 (472)
T 4fbk_A 310 EHECLIDGSYNPTQKFTVVQPGSTIATSLSPGETAPKHCGILNITGKDFHLEKIRLRTVRPFI 372 (472)
T ss_dssp CCSCEEEEEEETTTTEEEEECCCSSCSSCCGGGCSCCEEEEEEEETTEEEEEEEECSSSCCEE
T ss_pred cccceeeecccCCCCeEEEECCCccccccCccCCCCCEEEEEEEECCEEEEEEEECCCcccEE
Confidence 999998642223356789999999999998766679999999999999999999999999984
No 3
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*
Probab=100.00 E-value=2.2e-46 Score=356.85 Aligned_cols=298 Identities=48% Similarity=0.860 Sum_probs=245.1
Q ss_pred CCCCCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCC
Q psy11941 16 YDDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGD 95 (313)
Q Consensus 16 ~~~~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~ 95 (313)
..+.++|||+|+||+|+|....+..+..+...+|+++++.+.++++|+||++||+||...++.+++..+++.|+++|.++
T Consensus 8 ~~~~~~mrilhiSDlHLg~~~~~~~~~~d~~~~l~~lv~~~~~~~~D~VliaGDLfd~~~p~~~~~~~~~~~lr~~~~g~ 87 (417)
T 4fbw_A 8 LHNENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERDVDMILLGGDIFHDNKPSRKALYQALRSLRLNCLGD 87 (417)
T ss_dssp --CTTCEEEEEECCCCBTTTTTCTTTTTHHHHHHHHHHHHHHHTTCSEEEECSCCBSSSSCCHHHHHHHHHHHHHHHBSS
T ss_pred CCCCCCeEEEEEEcCCCCCcccccccchhHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCHHHHHHHHHHHHHhcccC
Confidence 35567999999999999988777777888999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeeccCcccccc---cCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEecccccCCceeeec
Q psy11941 96 RSVFIDVISDPKLVMC---NDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNP 172 (313)
Q Consensus 96 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 172 (313)
.-++||+|+|...+|. -..+||+||+++.++|||+|+||||...+....++.+++...+++++++.+...+.+.+.|
T Consensus 88 ~~~~~e~L~d~~~~~~~~~~~~~n~~d~~~~~gIpV~~I~GNHD~~~~~~~~s~~~lL~~~g~v~l~g~~~~~~~i~~~p 167 (417)
T 4fbw_A 88 KPCELELLSDTSLTTGDTAVCNINYLDPNINVAIPVFSIHGNHDDPSGDGRYSALDILQVTGLVNYFGRVPENDNIVVSP 167 (417)
T ss_dssp CCCCCEECC------------CCGGGCTTBCBSSCEEECCCGGGC-----CCCHHHHHHHTTSCEECCCCC---CEEECC
T ss_pred CcccceeccchhhhcccccccccccccccccCCCeEEEEecCCCCccccccccHHHHhccCCeEEEeCCcccCCceeEEe
Confidence 9999999998876652 2479999999999999999999999988654456788999999998998876667777888
Q ss_pred EEEeeCCeEEEEEecCCCchHHHHHHhhhcchhccCCC-CCCCcceEEEeeccccCCCCcCccccccCCCcccEEEeCCc
Q psy11941 173 LIIQKNETKVAIFGLGYVKDERLCNMIKHNKVKYMKPT-DDKDIIYILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHE 251 (313)
Q Consensus 173 ~~l~~~~~~~~i~gl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Ilv~H~~~~~~~~~~~~~~~~~~~~~d~v~~GH~ 251 (313)
+.+++|+.++.+||+||..++++.....+..+++..+. ...+.++|+++|++....+...+++..+++.++|||++||+
T Consensus 168 v~l~~g~~~valyG~~~~~d~rl~r~~~~~~v~~~~p~~~~~~~~nIlvlH~~~~~~~~~~yip~~l~~~~~DyvalGH~ 247 (417)
T 4fbw_A 168 ILLQKGFTKLALYGISNVRDERLYHSFRENKVKFLRPDLYRDEWFNLLTVHQNHSAHTPTSYLPESFIQDFYDFVLWGHE 247 (417)
T ss_dssp EEEEETTEEEEEEEECCCCHHHHHHHHHTTCEEEEEESTTTTTSEEEEEEESCSSCSSSSSSCCGGGSCTTCSEEEEESC
T ss_pred EEEEecCceEEEEeccCCchhhhhhhhhhhhhhhcCcccccCCceEEEEecCCccCCCCcccCchhHhhcCCCEEEecCc
Confidence 99999999999999999998887766666555555443 23456999999999877666678888888899999999999
Q ss_pred cCccccCCCCCCCcccEEecCCCceeccccCccccccEEEEEEeCCceeEEEEeCCCCCCCC
Q psy11941 252 HECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPRSLETVRPFV 313 (313)
Q Consensus 252 H~~~~~~~~~~~~~~~i~~~GS~~~~~~~e~~~~~~g~~vv~~~~~~~~~~~i~l~~~r~~~ 313 (313)
|.++..+..+..++.+++||||+.++++++++.++++|++++++++.++++++|+++.|||+
T Consensus 248 H~~~~~~~~~~~~g~~i~~PGS~~~~s~~e~E~~~kg~~lvei~~~~~~~e~i~l~~~Rpf~ 309 (417)
T 4fbw_A 248 HECLIDGSYNPTQKFTVVQPGSTIATSLSPGETAPKHCGILNITGKDFHLEKIRLRTVRPFI 309 (417)
T ss_dssp CSCEEEEEEETTTTEEEEECCCSSCSSCCHHHHSCCEEEEEEEETTEEEEEEEECSSSCCEE
T ss_pred cccceeccccCCCCEEEEECCCCCcCCCccccCCCCEEEEEEEECCEEEEEEEECCCcccEE
Confidence 99997642223356799999999999998655578999999999999999999999999984
No 4
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=100.00 E-value=8.5e-32 Score=251.13 Aligned_cols=243 Identities=21% Similarity=0.271 Sum_probs=167.0
Q ss_pred CCCeEEEEEeeccccC----cccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCC-cCCCCCCCHHHHHHHHHHHHHhc
Q psy11941 18 DRNTIRIMIASDIHLG----YLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGD-LFHINKPSPTTLKKCLETLRKYC 92 (313)
Q Consensus 18 ~~~~mkilh~SD~Hlg----~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GD-lf~~~~~~~~~~~~~~~~l~~l~ 92 (313)
..++|||+|+||||+| ....+..|.++...+|+++++.++++++|+||++|| +||...++.+++..+.++|+++.
T Consensus 15 ~~~~mrilh~SD~HlG~~~~~~~~~~~r~~~~~~~l~~lv~~~~~~~~D~vliaGD~l~d~~~~~~~~~~~~~~~l~~L~ 94 (336)
T 2q8u_A 15 NLKELKILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKREVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMM 94 (336)
T ss_dssp TCCEEEEEEEECCCBTCEECTTTCCEECHHHHHHHHHHHHHHHHHHTCSEEEEESCSBSCSSCCCHHHHHHHHHHHHHHH
T ss_pred ecCceEEEEECcccCCCCccccccCcChhHHHHHHHHHHHHHHHHhCCCEEEECCccccCCCCCCHHHHHHHHHHHHHHH
Confidence 4568999999999999 444455667788899999999999999999999999 99998888888888888888763
Q ss_pred cCCCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCC-CeeEecccccCCceeee
Q psy11941 93 IGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSG-LVNYFGKCTNLNEITLN 171 (313)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~ 171 (313)
.. +||++|+||||... .. ....++...+ ++.+++..... .
T Consensus 95 ------------------------------~~-~pv~~i~GNHD~~~-~~--~~~~~l~~~g~nv~v~~~~~~~---~-- 135 (336)
T 2q8u_A 95 ------------------------------RT-APVVVLPGNHDWKG-LK--LFGNFVTSISSDITFVMSFEPV---D-- 135 (336)
T ss_dssp ------------------------------HH-SCEEECCC-------CH--HHHHHHHHHCSSEEECCSSSCE---E--
T ss_pred ------------------------------hc-CCEEEECCCCCccc-cc--cHHHHHHhcCCEEEEEeccccc---C--
Confidence 22 79999999999976 22 1234454443 34455443221 0
Q ss_pred cEEEeeCCeEEEEEecCCCchHH------------HHHHhhhcchhccCCCCCCCcceEEEeeccccCCCC---c-----
Q psy11941 172 PLIIQKNETKVAIFGLGYVKDER------------LCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGT---V----- 231 (313)
Q Consensus 172 ~~~l~~~~~~~~i~gl~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~---~----- 231 (313)
+..+. +..+.++|+||..+.. +.++....... .. ..+.++|+++|+++..... .
T Consensus 136 ~~~~~--~~~v~i~glp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~---~~~~~~Ill~H~~~~~~~~~~~~~~~~~ 209 (336)
T 2q8u_A 136 VEAKR--GQKVRILPFPYPDESEALRKNEGDFRFFLESRLNKLYEE-AL---KKEDFAIFMGHFTVEGLAGYAGIEQGRE 209 (336)
T ss_dssp EECTT--SCEEEEEEECCC-------CCSSHHHHHHHHHHHHHHHH-HH---TCSSEEEEEEESEETTCC--------CC
T ss_pred ceEEe--CCCEEEEECCCCCHHHHHHHhhHHHHHHHHHHHHHHHHh-cc---CCCCCEEEEECccccCCCCCCCccchhh
Confidence 12222 3468899999976532 22332221110 00 1245899999999753211 0
Q ss_pred CccccccCCCcccEEEeCCccCccccCCCCCCCcccEEecCCCceeccccCccccccEEEEEEeCC-ceeEEEEeCCCCC
Q psy11941 232 KNIAEDSIPSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQ-NYKLVPRSLETVR 310 (313)
Q Consensus 232 ~~~~~~~~~~~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS~~~~~~~e~~~~~~g~~vv~~~~~-~~~~~~i~l~~~r 310 (313)
..++..+++.++||+++||+|.++... +...++|||||.+.+|+|.+ .++||++++++++ .++++++|++. |
T Consensus 210 ~~v~~~l~~~~~d~v~~GH~H~~~~~~-----~~~~i~y~GS~~~~s~~e~~-~~~~~~lv~i~~~~~~~v~~i~~~~-r 282 (336)
T 2q8u_A 210 IIINRALIPSVVDYAALGHIHSFREIQ-----KQPLTIYPGSLIRIDFGEEA-DEKGAVFVELKRGEPPRYERIDASP-L 282 (336)
T ss_dssp CEECGGGSCTTSSEEEEESCSSCEEEE-----ETTEEEECCCSSCCSGGGTT-CCCEEEEEEEETTSCCEEEEEECCC-C
T ss_pred cccCHHHccccCCEEEEccccCceEeC-----CCccEEECCCCcCCCccccC-CCCEEEEEEEeCCCccEEEEEECCC-E
Confidence 123344566689999999999999863 23579999999999999743 4799999999975 58999999998 9
Q ss_pred CC
Q psy11941 311 PF 312 (313)
Q Consensus 311 ~~ 312 (313)
||
T Consensus 283 ~~ 284 (336)
T 2q8u_A 283 PL 284 (336)
T ss_dssp CE
T ss_pred EE
Confidence 87
No 5
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=99.98 E-value=1.1e-31 Score=254.64 Aligned_cols=240 Identities=21% Similarity=0.282 Sum_probs=168.7
Q ss_pred EEEEEeeccccCcc----cCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcC-CCCCCCHHHHHHHHHHHHHhccCCC
Q psy11941 22 IRIMIASDIHLGYL----ETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLF-HINKPSPTTLKKCLETLRKYCIGDR 96 (313)
Q Consensus 22 mkilh~SD~Hlg~~----~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf-~~~~~~~~~~~~~~~~l~~l~~~~~ 96 (313)
|||+|+||||+|.. ..+..+..+...+|+++++.++++++|+||++||+| +...++.+++..+.+.|.++.
T Consensus 1 mrilh~SD~Hlg~~~~~~~~g~~~~~~~~~~l~~l~~~~~~~~~D~vliaGDl~hd~~~~~~~~~~~~~~~l~~l~---- 76 (379)
T 3tho_B 1 MKILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKREVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMM---- 76 (379)
T ss_dssp CEEEEECCCCBTCEECSSSSCEECHHHHHHHHHHHHHHHHHHTCSEEEECSCCBSCSSSCCHHHHHHHHHHHHHHH----
T ss_pred CeEEEEcccCCCCCccccccCcChhHHHHHHHHHHHHHHHhcCCCEEEECCCccccCCCCCHHHHHHHHHHHHHHH----
Confidence 89999999999997 556667778889999999999999999999999999 777788888888888888764
Q ss_pred ceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhh--CCCeeEecccccCCceeeecEE
Q psy11941 97 SVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSN--SGLVNYFGKCTNLNEITLNPLI 174 (313)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~ 174 (313)
.. +||++|+||||... ......+.. .+.+.++..+ .++.
T Consensus 77 --------------------------~~-~~v~~i~GNHD~~~----~~~~~~~~~~~~~~~~~~~~~--------~~v~ 117 (379)
T 3tho_B 77 --------------------------RT-APVVVLPGNQDWKG----LKLFGNFVTSISSDITFVMSF--------EPVD 117 (379)
T ss_dssp --------------------------HH-SCEEECCCTTSCTT----HHHHHHHHHTTCSSEEECCSS--------CCEE
T ss_pred --------------------------hC-CCEEEEcCCCcccc----CccccccccccCCcceeeccc--------ceEE
Confidence 23 79999999999543 111222211 2233222211 2344
Q ss_pred Eee-CCeEEEEEecCCCchHH---------HHHHhhhcchhccCCCCCCCcceEEEeeccccCCCC----c----Ccccc
Q psy11941 175 IQK-NETKVAIFGLGYVKDER---------LCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGT----V----KNIAE 236 (313)
Q Consensus 175 l~~-~~~~~~i~gl~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~----~----~~~~~ 236 (313)
+.. .+..+.|+|+||..+.. ..|+...... .......++.++|+++|+++..... . ..+..
T Consensus 118 l~~~~G~~v~i~glp~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~I~l~H~~v~g~~~~~~se~~~~~~v~~ 196 (379)
T 3tho_B 118 VEAKRGQKVRILPFPYPDESEALRKNEGDFRFFLESRLNK-LYEEALKKEDFAIFMGHFTVEGLAGYAGIEQGREIIINR 196 (379)
T ss_dssp EECTTCCEEEEEEECCCCCC----CHHHHHHHHHHHHHHH-HHHHHHTCSSEEEEEEESCBSCCCC-------CSCCBCG
T ss_pred EEcCCCCEEEEEECCCCCHHHHhhhhccchHHHHHHHHHH-HHHHhcCCCCCeEEEEeccccCCccCCCCccccccccCH
Confidence 442 34478999999976532 2222222110 0000001345899999998753211 1 12334
Q ss_pred ccCCCcccEEEeCCccCccccCCCCCCCcccEEecCCCceeccccCccccccEEEEEEeCC-ceeEEEEeCCCCCCC
Q psy11941 237 DSIPSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQ-NYKLVPRSLETVRPF 312 (313)
Q Consensus 237 ~~~~~~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS~~~~~~~e~~~~~~g~~vv~~~~~-~~~~~~i~l~~~r~~ 312 (313)
.+++.++|||++||+|.++.+. +..+++|||||.+++|+|.+ .++||++|+++++ .++++++| .+.|||
T Consensus 197 ~~~~~~~dyvalGH~H~~q~~~-----~~~~i~y~GS~~~~~f~E~~-~~k~~~lv~~~~~~~~~v~~i~-~~~r~~ 266 (379)
T 3tho_B 197 ALIPSVVDYAALGHIHSFREIQ-----KQPLTIYPGSLIRIDFGEEA-DEKGAVFVELKRGEPPRYERID-ASPLPL 266 (379)
T ss_dssp GGSCTTSSEEEEESCSSCEEEE-----ETTEEEECCCSSCCSGGGSS-SCCEEEEEECCSSSCCEEEEEE-CCCCCE
T ss_pred HHcCcCCCEEEcccccCCeEeC-----CCCcEEecCCCCCCCccccc-CCCEEEEEEEcCCCcceEEEeC-CCCeee
Confidence 5666789999999999998762 33589999999999999853 5799999999865 58999999 767886
No 6
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=99.98 E-value=2.3e-31 Score=248.05 Aligned_cols=245 Identities=28% Similarity=0.417 Sum_probs=169.7
Q ss_pred EEEEEeeccccCccc-CCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceee
Q psy11941 22 IRIMIASDIHLGYLE-TDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFI 100 (313)
Q Consensus 22 mkilh~SD~Hlg~~~-~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 100 (313)
|||+|+||+|+|... ....+..+...+|+++++.++++++|+||++||+||...++.+++..+.+.|+++.
T Consensus 1 mkilh~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vl~~GDl~d~~~~~~~~~~~~~~~l~~l~-------- 72 (333)
T 1ii7_A 1 MKFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDLFHSSRPSPGTLKKAIALLQIPK-------- 72 (333)
T ss_dssp CEEEEECCCCBTCCGGGCHHHHHHHHHHHHHHHHHHHHTTCSEEEEESCSBSSSSCCHHHHHHHHHHHHHHH--------
T ss_pred CEEEEEcccCCCCcccCCchhhHHHHHHHHHHHHHHHhcCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHH--------
Confidence 799999999999743 33445667788999999999999999999999999998787778888888888764
Q ss_pred eeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEeccccc-CC--ceee-----ec
Q psy11941 101 DVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTN-LN--EITL-----NP 172 (313)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~--~~~~-----~~ 172 (313)
..++||++|+||||..... .+..+++...+++++++.... .+ .+.. .+
T Consensus 73 ----------------------~~~~~v~~v~GNHD~~~~~--~~~~~~l~~~g~v~vl~~~~~~~~~~~~~~~~~~~~~ 128 (333)
T 1ii7_A 73 ----------------------EHSIPVFAIEGNHDRTQRG--PSVLNLLEDFGLVYVIGMRKEKVENEYLTSERLGNGE 128 (333)
T ss_dssp ----------------------TTTCCEEEECCTTTCCSSS--CCHHHHHHHTTSCEECEEESSCCCSSSEEEEECTTSC
T ss_pred ----------------------HCCCcEEEeCCcCCCccCC--cCHHHHHHHcCCcEEecccccccccceeeecccCCCc
Confidence 3468999999999997542 245677888887556552111 11 1110 01
Q ss_pred EEEeeCCeEEEEEecCCCchHHHHHHhhhcchhccCCCCCCCcceEEEeeccccCCC---C--cCccccccCCCcccEEE
Q psy11941 173 LIIQKNETKVAIFGLGYVKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERG---T--VKNIAEDSIPSFFHFIL 247 (313)
Q Consensus 173 ~~l~~~~~~~~i~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~---~--~~~~~~~~~~~~~d~v~ 247 (313)
+.+......+.++|++|.....+....... .+.+.+ +..+|+++|+++.... . ...+....+..++|||+
T Consensus 129 ~~~~~~~~~v~i~g~~~~~~~~~~~~~~~l-~~~~~~----~~~~Ill~H~~~~~~~~~~~~~~~~~~~~~l~~~~dyva 203 (333)
T 1ii7_A 129 YLVKGVYKDLEIHGMKYMSSAWFEANKEIL-KRLFRP----TDNAILMLHQGVREVSEARGEDYFEIGLGDLPEGYLYYA 203 (333)
T ss_dssp EEEEEEETTEEEEEECCCCHHHHHSSTTHH-HHHCCC----CSSEEEEEECCBHHHHHTTTCCCCSBCGGGSCTTCSEEE
T ss_pred eeeccCcCCEEEEecCCcCHHHHHHHHHHH-HHhhCC----CCCeEEEEcCChhhcccccccccceecHHHCCccCCEEE
Confidence 222110135789999998765433210000 011122 2369999999864210 0 01111222335799999
Q ss_pred eCCccCccccCCCCCCCcccEEecCCCceeccccCc--------------cccccEEEEEEeCCceeEEEEeCCCCCCC
Q psy11941 248 WGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGE--------------AVQKKCGILMCNKQNYKLVPRSLETVRPF 312 (313)
Q Consensus 248 ~GH~H~~~~~~~~~~~~~~~i~~~GS~~~~~~~e~~--------------~~~~g~~vv~~~~~~~~~~~i~l~~~r~~ 312 (313)
+||+|.+|..+. ++..++|||||.+++|+|.+ ..+|||++++ ..+++++|+++ |||
T Consensus 204 lGH~H~~q~~~~----~~~~i~ypGS~~~~~~~E~~~~~~~~G~~~~p~~~~~kg~~lv~----~~~~~~i~l~~-r~~ 273 (333)
T 1ii7_A 204 LGHIHKRYETSY----SGSPVVYPGSLERWDFGDYEVRYEWDGIKFKERYGVNKGFYIVE----DFKPRFVEIKV-RPF 273 (333)
T ss_dssp EESCSSCEEEEE----TTEEEEECCCSSCCSGGGCSEEEEECSSSEEEEECCCCEEEEEE----TTEEEEEECCC-CCE
T ss_pred ccccccceecCC----CCceEEEcCCCeecccchhccccccccccccccccCCCeEEEEe----cCceeEEECCC-Cce
Confidence 999999997631 45789999999999999842 1379999999 47899999998 987
No 7
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=99.97 E-value=3.6e-31 Score=251.61 Aligned_cols=246 Identities=21% Similarity=0.295 Sum_probs=168.0
Q ss_pred CCCCeEEEEEeeccccCcccCC-cCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCC
Q psy11941 17 DDRNTIRIMIASDIHLGYLETD-RERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGD 95 (313)
Q Consensus 17 ~~~~~mkilh~SD~Hlg~~~~~-~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~ 95 (313)
....+|||+|+||+|+|....+ ..+..+.+.+|+++++.++++++|+||++||+|+.+.++..++..+.+.|+++.
T Consensus 16 ~~~~~mrilhiSD~Hlg~~~~~~~~r~~~~~~~l~~~v~~~~~~~~D~VliaGDl~d~~~p~~~~~~~~~~~l~~L~--- 92 (386)
T 3av0_A 16 PRGSHMMFVHIADNHLGYRQYNLDDREKDIYDSFKLCIKKILEIKPDVVLHSGDLFNDLRPPVKALRIAMQAFKKLH--- 92 (386)
T ss_dssp --CCCCEEEEECCCCBTCCGGGCHHHHHHHHHHHHHHHHHHHTTCCSEEEECSCSBSSSSCCHHHHHHHHHHHHHHH---
T ss_pred cCCCCeEEEEEccCCCCccccCcchhhHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHH---
Confidence 3456899999999999974322 234556778899999999999999999999999998888778888888888764
Q ss_pred CceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEecccccCCceeeecEEE
Q psy11941 96 RSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLII 175 (313)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 175 (313)
..++||++|+||||.........+...+... +.+++. .++.+
T Consensus 93 ---------------------------~~~~pv~~v~GNHD~~~~~~~~~~~~~l~~~--v~~l~~---------~~v~~ 134 (386)
T 3av0_A 93 ---------------------------ENNIKVYIVAGNHEMPRRLGEESPLALLKDY--VKILDG---------KDVIN 134 (386)
T ss_dssp ---------------------------HTTCEEEECCCGGGSCSSTTSCCGGGGGTTT--CEECSE---------EEEEE
T ss_pred ---------------------------hcCCcEEEEcCCCCCCccccccCHHHHHHHH--eEEcCC---------CcEEE
Confidence 3468999999999998753322233333322 333321 11222
Q ss_pred eeCCeEEEEEecCCCchHHHHHHhhhcchhccCCCCCCCcceEEEeeccccCCCCcCc-cccccCCCcccEEEeCCccCc
Q psy11941 176 QKNETKVAIFGLGYVKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTVKN-IAEDSIPSFFHFILWGHEHEC 254 (313)
Q Consensus 176 ~~~~~~~~i~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~~~~-~~~~~~~~~~d~v~~GH~H~~ 254 (313)
.++..+.++|++|........+.... ..+.+....+.++|+++|+++....+..+ +....++. +|||++||+|.+
T Consensus 135 -~~~~~v~i~gl~~~~~~~~~~~~~~l--~~l~~~~~~~~~~Ill~H~~~~~~~~~~~~~~~~~l~~-~d~v~~GH~H~~ 210 (386)
T 3av0_A 135 -VNGEEIFICGTYYHKKSKREEMLDKL--KNFESEAKNYKKKILMLHQGINPYIPLDYELEHFDLPK-FSYYALGHIHKR 210 (386)
T ss_dssp -ETTEEEEEEEECCCCSTTHHHHHHHH--HHHHHHHHTCSSEEEEECCCCTTTSSSSCSSCGGGSCC-CSEEEECSCCSC
T ss_pred -eCCCCEEEEeCCCCCHHHHHHHHHHH--HHhhhhcccCCCEEEEECcCccccCCCCcccCHHHhhh-CCeEEccCCCCC
Confidence 23467899999997654322222111 11110001244899999998753211111 11222333 899999999999
Q ss_pred cccCCCCCCCcccEEecCCCceeccccCcc---ccccEEEEEEeC---CceeEEEEeCCCCCCC
Q psy11941 255 RIKPEYNTKQRFHVCQPGSPVATSLCAGEA---VQKKCGILMCNK---QNYKLVPRSLETVRPF 312 (313)
Q Consensus 255 ~~~~~~~~~~~~~i~~~GS~~~~~~~e~~~---~~~g~~vv~~~~---~~~~~~~i~l~~~r~~ 312 (313)
+..+ .++..++|||||.+.+++|.+. .++||+++++++ +.++++++|++ .|||
T Consensus 211 ~~~~----~~~~~i~ypGS~~~~~~~e~~~~~~~~kg~~lv~i~~~~~~~~~v~~i~l~-~r~~ 269 (386)
T 3av0_A 211 ILER----FNDGILAYSGSTEIIYRNEYEDYKKEGKGFYLVDFSGNDLDISDIEKIDIE-CREF 269 (386)
T ss_dssp EEEE----CSSSEEEECCCSSCCSGGGTHHHHHHCSEEEEEECCSSSCCGGGEEEEECC-CCCE
T ss_pred cccc----CCCceEEECCcccccCcchhccccCCCCEEEEEEEecCcCCCceEEEEECC-ccee
Confidence 6543 2567899999999999987421 468999999998 77899999995 6886
No 8
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=99.90 E-value=2.9e-22 Score=184.64 Aligned_cols=234 Identities=17% Similarity=0.120 Sum_probs=151.3
Q ss_pred CCCCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHh--cCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccC
Q psy11941 17 DDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALD--QEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIG 94 (313)
Q Consensus 17 ~~~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~--~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~ 94 (313)
.....|||+|+||+|++..........+....|+++++.+.+ .++|+||++||+++.+.+ +.+..+.+.|+++..
T Consensus 21 ~~~~~~ri~~iSD~H~~~~~~~~~~~~~~~~~l~~~l~~i~~~~~~~d~vi~~GDl~~~~~~--~~~~~~~~~l~~l~~- 97 (330)
T 3ib7_A 21 HPRPDYVLLHISDTHLIGGDRRLYGAVDADDRLGELLEQLNQSGLRPDAIVFTGDLADKGEP--AAYRKLRGLVEPFAA- 97 (330)
T ss_dssp SCCCSEEEEEECCCCBCSSSCCBTTTBCHHHHHHHHHHHHHHHTCCCSEEEECSCCBTTCCH--HHHHHHHHHHHHHHH-
T ss_pred CCCCCeEEEEEeCCccCCCCcccccccCHHHHHHHHHHHHHhcCCCCCEEEECCCCCCCCCH--HHHHHHHHHHHHHHh-
Confidence 445589999999999987655444445677889999999988 899999999999998754 677777777775420
Q ss_pred CCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEecccccCCceeeecEE
Q psy11941 95 DRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLI 174 (313)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (313)
..++|+++++||||.... ....+...... .+ . ....
T Consensus 98 ----------------------------~~~~pv~~v~GNHD~~~~-----~~~~~~~~~~~--~~---~------~~~~ 133 (330)
T 3ib7_A 98 ----------------------------QLGAELVWVMGNHDDRAE-----LRKFLLDEAPS--MA---P------LDRV 133 (330)
T ss_dssp ----------------------------HHTCEEEECCCTTSCHHH-----HHHHHHCCCCC--CS---C------CCEE
T ss_pred ----------------------------hcCCCEEEeCCCCCCHHH-----HHHHhcccccc--cC---C------cceE
Confidence 236799999999998531 11222211100 00 0 0022
Q ss_pred EeeCCeEEEEEec---------CCCchHHHHHHhhhcchhccCCCCCCCcceEEEeeccccCCCCc--C--------ccc
Q psy11941 175 IQKNETKVAIFGL---------GYVKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTV--K--------NIA 235 (313)
Q Consensus 175 l~~~~~~~~i~gl---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~~--~--------~~~ 235 (313)
+..++ +.++++ ++....++.|+.+.+.. .....+|+++|+++...+.. . .+.
T Consensus 134 ~~~~~--~~~i~lds~~~~~~~~~~~~~q~~wl~~~l~~-------~~~~~~iv~~Hh~p~~~~~~~~~~~~~~~~~~l~ 204 (330)
T 3ib7_A 134 CMIDG--LRIIVLDTSVPGHHHGEIRASQLGWLAEELAT-------PAPDGTILALHHPPIPSVLDMAVTVELRDQAALG 204 (330)
T ss_dssp EEETT--EEEEECCCCCTTCCSBCCCHHHHHHHHHHTTS-------CCTTCEEEECSSCSSCCSSGGGGGGSBSCHHHHH
T ss_pred EEeCC--EEEEEecCCCCCCCCCccCHHHHHHHHHHHHh-------cccCCeEEEEECCCCCCCccccccccccCHHHHH
Confidence 22333 223333 34567888887665321 12235899999987643210 0 011
Q ss_pred cccCCCcccEEEeCCccCccccCCCCCCCcccEEecCCCceeccc-------cCccccccEEEEEEeCCceeEEEEeCCC
Q psy11941 236 EDSIPSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLC-------AGEAVQKKCGILMCNKQNYKLVPRSLET 308 (313)
Q Consensus 236 ~~~~~~~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS~~~~~~~-------e~~~~~~g~~vv~~~~~~~~~~~i~l~~ 308 (313)
..+...+++++++||+|.++... .++..++++||+....-. ..+..++||.+++++++++.++++++..
T Consensus 205 ~~l~~~~v~~v~~GH~H~~~~~~----~~g~~~~~~gs~~~~~~~~~~~g~~~~~~~~~gy~iv~i~~~~~~~~~v~~~~ 280 (330)
T 3ib7_A 205 RVLRGTDVRAILAGHLHYSTNAT----FVGIPVSVASATCYTQDLTVAAGGTRGRDGAQGCNLVHVYPDTVVHSVIPLGG 280 (330)
T ss_dssp HHHTTSSEEEEEECSSSSCEEEE----ETTEEEEECCCSSCEECTTSCTTCCCEESCSCEEEEEEECSSCEEEEEEECSC
T ss_pred HHHhccCceEEEECCCCCcccce----ECCEEEEecCcceeccCCCCCCcceeccCCCCceEEEEEECCCeEEEEeccCC
Confidence 12234579999999999998643 245677888886532110 0112467899999999999999999876
Q ss_pred CC
Q psy11941 309 VR 310 (313)
Q Consensus 309 ~r 310 (313)
..
T Consensus 281 ~~ 282 (330)
T 3ib7_A 281 GE 282 (330)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 9
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=99.89 E-value=1.7e-22 Score=181.35 Aligned_cols=232 Identities=16% Similarity=0.192 Sum_probs=144.3
Q ss_pred EEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhc--CCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCcee
Q psy11941 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQ--EVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVF 99 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~--~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 99 (313)
|||+|+||+|++..........+....|+++++.+++. ++|+||++||+++.+.+ +.++.+.+.|++
T Consensus 1 mri~~iSD~H~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~~d~vi~~GDl~~~~~~--~~~~~~~~~l~~--------- 69 (274)
T 3d03_A 1 MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRP--EEYQVARQILGS--------- 69 (274)
T ss_dssp CEEEEECCCCBCSTTCCBTTTBCHHHHHHHHHHHHHTCSSCCSEEEEESCCBSSCCH--HHHHHHHHHHTT---------
T ss_pred CEEEEEecCCcCCCCcccccccCHHHHHHHHHHHHHhcCCCCCEEEECCCCCCCCCH--HHHHHHHHHHHh---------
Confidence 79999999999864332222245667899999999876 68999999999997653 556666676653
Q ss_pred eeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEeccc-ccCCceeeecEEEeeC
Q psy11941 100 IDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKC-TNLNEITLNPLIIQKN 178 (313)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~~ 178 (313)
.++|+++++||||.... ....+... +.. .... .. ....+..+
T Consensus 70 ------------------------l~~p~~~v~GNHD~~~~-----~~~~~~~~-~~~-~~~~~~~------~~~~~~~~ 112 (274)
T 3d03_A 70 ------------------------LNYPLYLIPGNHDDKAL-----FLEYLQPL-CPQ-LGSDANN------MRCAVDDF 112 (274)
T ss_dssp ------------------------CSSCEEEECCTTSCHHH-----HHHHHGGG-SGG-GCSCGGG------CCEEECSS
T ss_pred ------------------------cCCCEEEECCCCCCHHH-----HHHHhhhh-hcC-cccCCCc------eEEEEEeC
Confidence 35799999999998542 11222211 000 0000 00 00122222
Q ss_pred CeEEEEEecC---------CCchHHHHHHhhhcchhccCCCCCCCcceEEEeeccccCCCCc--C-c-c-c----cccC-
Q psy11941 179 ETKVAIFGLG---------YVKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTV--K-N-I-A----EDSI- 239 (313)
Q Consensus 179 ~~~~~i~gl~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~~--~-~-~-~----~~~~- 239 (313)
.+.++++. ....+++.|+.+.+.. ..+..+|+++|+++...+.. + . . . ..++
T Consensus 113 --~~~~i~ld~~~~~~~~~~~~~~~~~wl~~~l~~-------~~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~l~~~l~ 183 (274)
T 3d03_A 113 --ATRLLFIDSSRAGTSKGWLTDETISWLEAQLFE-------GGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVE 183 (274)
T ss_dssp --SSEEEECCCCCTTCSSBCCCHHHHHHHHHHHHH-------HTTSCEEEEESSCSSCCSCTTTGGGSBTTTHHHHHHHH
T ss_pred --CEEEEEEeCCCCCCCCCeeCHHHHHHHHHHHHh-------CCCCCEEEEECCCCcccCCcccCcccCcCHHHHHHHHH
Confidence 34455554 3456677776654321 12348999999987643210 0 0 0 0 1122
Q ss_pred CC-cccEEEeCCccCccccCCCCCCCcccEEecCCCceecccc------CccccccEEEEEEeCCceeEEEEeCC---CC
Q psy11941 240 PS-FFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCA------GEAVQKKCGILMCNKQNYKLVPRSLE---TV 309 (313)
Q Consensus 240 ~~-~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS~~~~~~~e------~~~~~~g~~vv~~~~~~~~~~~i~l~---~~ 309 (313)
.. +++++++||+|..+.... .+...+++||+..+..+.. ....++||.+++++++.++++++++. ..
T Consensus 184 ~~~~v~~vl~GH~H~~~~~~~---~g~~~~~~pg~~~~~~~~~~~~~~~~~~~~~gy~i~~i~~~~~~~~~~~~~~~~~~ 260 (274)
T 3d03_A 184 RFPSLTRIFCGHNHSLTMTQY---RQALISTLPGTVHQVPYCHADTDPYYDLSPASCLMHRQVGEQWVSYQHSLAHYAGP 260 (274)
T ss_dssp HCTTEEEEEECSSSSCEEEEE---TTEEEEECCCSSCBCCCCSSCCSCEEBCCCCEEEEEEEETTEEEEEEEECSCCSCC
T ss_pred hCCCceEEEeCCCCCchhheE---CCEEEEEcCCcceeeccCCCccccccccCCCceEEEEEeCCcEEEEEEecCCCCCC
Confidence 22 689999999999887531 2335678899876654321 01246899999999988888888873 34
Q ss_pred CCCC
Q psy11941 310 RPFV 313 (313)
Q Consensus 310 r~~~ 313 (313)
+||+
T Consensus 261 ~~f~ 264 (274)
T 3d03_A 261 WLYD 264 (274)
T ss_dssp EECC
T ss_pred CCcc
Confidence 6664
No 10
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=99.84 E-value=8.3e-21 Score=165.51 Aligned_cols=201 Identities=16% Similarity=0.153 Sum_probs=116.6
Q ss_pred CeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCcee
Q psy11941 20 NTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVF 99 (313)
Q Consensus 20 ~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 99 (313)
++|||+++||+|++. ..++++++.+.++++|+||++||+++.+.. .+.+..+++.|++
T Consensus 4 ~~mri~~iSD~H~~~------------~~~~~~~~~~~~~~~D~vi~~GDl~~~~~~-~~~~~~~~~~l~~--------- 61 (228)
T 1uf3_A 4 TVRYILATSNPMGDL------------EALEKFVKLAPDTGADAIALIGNLMPKAAK-SRDYAAFFRILSE--------- 61 (228)
T ss_dssp CCCEEEEEECCTTCH------------HHHHHHHTHHHHHTCSEEEEESCSSCTTCC-HHHHHHHHHHHGG---------
T ss_pred ceEEEEEEeeccCCH------------HHHHHHHHHHhhcCCCEEEECCCCCCCCCC-HHHHHHHHHHHHh---------
Confidence 469999999999864 247788888888899999999999998643 3455555555552
Q ss_pred eeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhh--------CCCeeEecccccCCceeee
Q psy11941 100 IDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSN--------SGLVNYFGKCTNLNEITLN 171 (313)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~~ 171 (313)
.+.|+++|+||||.... +.+.. .+...+.+.
T Consensus 62 ------------------------~~~pv~~v~GNHD~~~~-------~~~~~~~~~~~~~~~~~~l~~~---------- 100 (228)
T 1uf3_A 62 ------------------------AHLPTAYVPGPQDAPIW-------EYLREAANVELVHPEMRNVHET---------- 100 (228)
T ss_dssp ------------------------GCSCEEEECCTTSCSHH-------HHHHHHHHHHHHCTTEEECBTS----------
T ss_pred ------------------------cCCcEEEECCCCCchhH-------HHHHhhhhhhccCcceEEcccc----------
Confidence 35799999999998652 11111 111111110
Q ss_pred cEEEeeCCeEEEEEecCCC-------chHHH----HHHhhhcchhccCCCCCCCcceEEEeeccccCCCCc----Ccccc
Q psy11941 172 PLIIQKNETKVAIFGLGYV-------KDERL----CNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTV----KNIAE 236 (313)
Q Consensus 172 ~~~l~~~~~~~~i~gl~~~-------~~~~~----~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~~----~~~~~ 236 (313)
.+.+ + ..+.++|+++. ...++ .+.. ....+++.. ..+..+|+++|+++...... ..+..
T Consensus 101 ~~~~--~-~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~--~~~~~~il~~H~p~~~~~~~~~~~~~~~~ 174 (228)
T 1uf3_A 101 FTFW--R-GPYLVAGVGGEIADEGEPEEHEALRYPAWVA-EYRLKALWE--LKDYPKIFLFHTMPYHKGLNEQGSHEVAH 174 (228)
T ss_dssp EEEE--T-TTEEEEEECSEEESSSCCBSSSSCEEEHHHH-HHHHGGGGG--SCSCCEEEEESSCBCBTTTBTTSBHHHHH
T ss_pred eEee--C-CCcEEecCCCCcCCCCccChhhcccchhhhH-HHHHHHHHh--CCCCCeEEEEccCcccCCccccCHHHHHH
Confidence 0111 1 13445555421 11111 0000 000011221 11348999999987532110 01111
Q ss_pred ccCCCcccEEEeCCccCccccCCCCCCCcccEEecCCCceeccccCccccccEEEEEEeCCceeEEEEeC
Q psy11941 237 DSIPSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPRSL 306 (313)
Q Consensus 237 ~~~~~~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS~~~~~~~e~~~~~~g~~vv~~~~~~~~~~~i~l 306 (313)
.+...++|++++||+|..+ . ..+...++||||.. +++|.++++++ .+++++.+
T Consensus 175 ~~~~~~~~~~~~GH~H~~~-~----~~~~~~~in~Gs~~----------~~~~~i~~~~~--~~~~~~~v 227 (228)
T 1uf3_A 175 LIKTHNPLLVLVAGKGQKH-E----MLGASWVVVPGDLS----------EGEYSLLDLRA--RKLETGNV 227 (228)
T ss_dssp HHHHHCCSEEEECCSSCEE-E----EETTEEEEECCBGG----------GTEEEEEETTT--TEEEEEEC
T ss_pred HHHHhCCCEEEEcccccCc-c----ccCCceEEEecccC----------CCceEEEEecc--eEeeeccc
Confidence 1112468999999999433 2 12567789999843 46799999876 67777665
No 11
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=99.82 E-value=1e-19 Score=162.33 Aligned_cols=208 Identities=10% Similarity=0.122 Sum_probs=116.6
Q ss_pred CeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHH--------------H-----
Q psy11941 20 NTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPT--------------T----- 80 (313)
Q Consensus 20 ~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~--------------~----- 80 (313)
++|||+|+||+|++.. .++++++.+.+.++|+||++||+++.+..+.. .
T Consensus 4 ~~mri~~iSDlH~~~~------------~~~~~l~~~~~~~~D~vi~~GDl~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 71 (260)
T 2yvt_A 4 MPRKVLAIKNFKERFD------------LLPKLKGVIAEKQPDILVVVGNILKNEALEKEYERAHLARREPNRKVIHENE 71 (260)
T ss_dssp CCCEEEEEECCTTCGG------------GHHHHHHHHHHHCCSEEEEESCCCCCHHHHHHHHHHHHTTCCCCTHHHHHHH
T ss_pred ceEEEEEEeecCCChH------------HHHHHHHHHHhcCCCEEEECCCCCCccCcchhhhhhhhhhcccchhhhhHHH
Confidence 4799999999998753 36788888888899999999999997642110 0
Q ss_pred ---HHHHHHHHHHhccCCCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCC--
Q psy11941 81 ---LKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGL-- 155 (313)
Q Consensus 81 ---~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~-- 155 (313)
...+.++++.+. ..+.|+++|+||||..... ...+.+...+.
T Consensus 72 ~~~~~~~~~~l~~l~------------------------------~~~~pv~~v~GNHD~~~~~---~~~~~~~~~~~~~ 118 (260)
T 2yvt_A 72 HYIIETLDKFFREIG------------------------------ELGVKTFVVPGKNDAPLKI---FLRAAYEAETAYP 118 (260)
T ss_dssp HHHHHHHHHHHHHHH------------------------------TTCSEEEEECCTTSCCHHH---HHHHHHHTTTTCT
T ss_pred HHHHHHHHHHHHHHH------------------------------hcCCcEEEEcCCCCchhhh---hHHHHhhhccCCc
Confidence 123444444432 3357999999999986521 01133333221
Q ss_pred -eeEecccccCCceeeecEEEeeCCeEEEEEecCCCc------hHHHH----HHhhhcchhccCCCCCCCcceEEEeecc
Q psy11941 156 -VNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVK------DERLC----NMIKHNKVKYMKPTDDKDIIYILVLHQN 224 (313)
Q Consensus 156 -~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~gl~~~~------~~~~~----~~~~~~~~~~~~~~~~~~~~~Ilv~H~~ 224 (313)
+..+.. . ..+..+ .+.++|+++.. +.++. |+... .++.+.. ..+..+|+++|++
T Consensus 119 ~~~~l~~-----~-----~~~~~~--~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~--~~~~~~Il~~H~p 183 (260)
T 2yvt_A 119 NIRVLHE-----G-----FAGWRG--EFEVIGFGGLLTEHEFEEDFVLKYPRWYVEY-ILKFVNE--LKPRRLVTIFYTP 183 (260)
T ss_dssp TEEECSS-----E-----EEEETT--TEEEEEECSEEESSCCBSSSSCEEEHHHHHH-HGGGGGG--SCCCEEEEEESSC
T ss_pred ceEEecC-----c-----ceEEEC--CEEEEecCCCcCCCCcCHHHHhhcchhhHHH-HHHHHHh--cCCCCEEEEECCC
Confidence 111110 0 112223 25566666432 11111 10000 0011111 1123779999998
Q ss_pred ccCCCCcCcc-------c----cccC-CCcccEEEeCCccCccccCCCCCCCcccEEecCCCceeccccCccccccEEEE
Q psy11941 225 RPERGTVKNI-------A----EDSI-PSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGIL 292 (313)
Q Consensus 225 ~~~~~~~~~~-------~----~~~~-~~~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS~~~~~~~e~~~~~~g~~vv 292 (313)
+..... +.. . ..++ ..+++++++||+| +.... .+...++||||... .+|.++
T Consensus 184 p~~~~~-d~~~~~~~~~~~~~l~~~~~~~~~~~vl~GH~H-~~~~~----~~~~~~in~Gs~~~----------g~~~ii 247 (260)
T 2yvt_A 184 PIGEFV-DRTPEDPKHHGSAVVNTIIKSLNPEVAIVGHVG-KGHEL----VGNTIVVNPGEFEE----------GRYAFL 247 (260)
T ss_dssp CSCSST-TCBTTBSCCCSCHHHHHHHHHHCCSEEEECSSC-CEEEE----ETTEEEEECCBGGG----------TEEEEE
T ss_pred cccccc-ccCcccccccCcHHHHHHHHHhCCCEEEECCcc-CCcEE----eCCEEEEeCCCCCC----------CceEEE
Confidence 643211 010 0 0111 2468999999999 43321 25667899999542 279999
Q ss_pred EEeCCceeEEE
Q psy11941 293 MCNKQNYKLVP 303 (313)
Q Consensus 293 ~~~~~~~~~~~ 303 (313)
+++++.+++..
T Consensus 248 ~~~~~~~~~~~ 258 (260)
T 2yvt_A 248 DLTQHKIKLEQ 258 (260)
T ss_dssp ETTTTEEEEEE
T ss_pred EEcCCEEEeee
Confidence 99987666554
No 12
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes}
Probab=99.80 E-value=2.3e-18 Score=165.63 Aligned_cols=240 Identities=19% Similarity=0.239 Sum_probs=138.6
Q ss_pred CCCCeEEEEEeeccccCcccCC--------------cCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHH
Q psy11941 17 DDRNTIRIMIASDIHLGYLETD--------------RERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLK 82 (313)
Q Consensus 17 ~~~~~mkilh~SD~Hlg~~~~~--------------~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~ 82 (313)
....+|||+|+||+|++..... ..........++++++.+++.++|+||++||+++.+.+ ..+.
T Consensus 35 ~~~~~~~i~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~vi~~GDl~~~~~~--~~~~ 112 (443)
T 2xmo_A 35 EKDRNLSMVVTTDVHYFAPSLTDNGKAFEKYVAAGDGKQLAYSDEITDAFLADVESKKTDVLIISGDLTNNGEK--TSHE 112 (443)
T ss_dssp CSCCCEEEEEECCCCBCCGGGBCCCHHHHHHHHTSTTCCGGGHHHHHHHHHHHHHHHTCSEEEEESCCBSSCCH--HHHH
T ss_pred cCCCCeEEEEEeCCCCCCccccccchhhhcccccccccccccHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCH--HHHH
Confidence 4556899999999999854210 00111246788999999999999999999999988754 4566
Q ss_pred HHHHHHHHhccCCCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcC------------ch---H
Q psy11941 83 KCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELV------------AA---L 147 (313)
Q Consensus 83 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~------------~~---~ 147 (313)
.+.+.|+.+. ..++|+++++||||........ .. .
T Consensus 113 ~~~~~l~~l~------------------------------~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (443)
T 2xmo_A 113 ELAKKLTQVE------------------------------KNGTQVFVVPGNHDINNPWARKFEKDKQLPTDTISPTDFS 162 (443)
T ss_dssp HHHHHHHHHH------------------------------HTTCEEEEECCTTTSSCTTCEEEETTEEEECCCCCHHHHH
T ss_pred HHHHHHHHHH------------------------------hCCCeEEEECCcCCCCCccccccCCcccccccccCHHHHH
Confidence 6777777552 2368999999999997632110 01 1
Q ss_pred HHHhhCCCeeEecccccCCceeeecEEEeeCCeEEEEEec-----------------CCCchHHHHHHhhhcchhccCCC
Q psy11941 148 DIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGL-----------------GYVKDERLCNMIKHNKVKYMKPT 210 (313)
Q Consensus 148 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~gl-----------------~~~~~~~~~~~~~~~~~~~~~~~ 210 (313)
..+...++...... ............+ .+.++++ +.....++.|+.+.+.. ..
T Consensus 163 ~~~~~~~~~~~~~~----~~~~~~y~~~~~~--~~~~i~Lds~~~~~~~~~~~~~~~g~~~~~ql~wL~~~L~~--~~-- 232 (443)
T 2xmo_A 163 KIYSDFGYEDAISS----DEFSLSYLAAPSS--KVWLLMLDTAIYKTNMQQGNPTTEGGLTAGTLDWIKESSAL--AK-- 232 (443)
T ss_dssp HHTCCCCCTTCSEE----CSSSSCEEECSBS--SEEEEECCCBCCTTHHHHTSCCCCBCCCHHHHHHHHHHHHH--HH--
T ss_pred HHhhhcChhhhhcc----CCCCceEEEecCC--CEEEEEeeCCCcCcccccCCCCcCCccCHHHHHHHHHHHHH--HH--
Confidence 11111111000000 0000011111122 2334443 33556777776554321 11
Q ss_pred CCCCcceEEEeeccccCCCCc---Cc-------cccccCCCcccEEEeCCccCccccCCCCCCC-cccEEecCCCceecc
Q psy11941 211 DDKDIIYILVLHQNRPERGTV---KN-------IAEDSIPSFFHFILWGHEHECRIKPEYNTKQ-RFHVCQPGSPVATSL 279 (313)
Q Consensus 211 ~~~~~~~Ilv~H~~~~~~~~~---~~-------~~~~~~~~~~d~v~~GH~H~~~~~~~~~~~~-~~~i~~~GS~~~~~~ 279 (313)
..+...|+++|+++...+.. .+ +...+...+++++++||+|...........+ ....+++||...
T Consensus 233 -~~~~~~Iv~~H~p~~~~~~~~~~~~~~~~~~~l~~ll~~~~v~lvl~GH~H~~~~~~~~~~~g~~~~~i~~gs~~~--- 308 (443)
T 2xmo_A 233 -KNGAKLIPVLHHNLTDHNDVIQKGYTINYNQQVIDALTEGAMDFSLSGHIHTQNIRSAKSTDGKEITDIVTNALSV--- 308 (443)
T ss_dssp -HTTCEEEEECSSBSSCSSCC--CCSBCTTHHHHHHHHHHTTCCEEEECSSCSCEEEEEECTTSCEEEEEECCCTTS---
T ss_pred -HcCCeEEEEECCCCcccccccccccccccHHHHHHHHHHcCCeEEEECCcccCchhhcccCCCCceEEEEcCcccc---
Confidence 12347899999997643210 00 0111122478999999999988642111112 245566777322
Q ss_pred ccCccccccEEEEEEeCCc--eeEEEEeCC
Q psy11941 280 CAGEAVQKKCGILMCNKQN--YKLVPRSLE 307 (313)
Q Consensus 280 ~e~~~~~~g~~vv~~~~~~--~~~~~i~l~ 307 (313)
.+.+|.+++++++. ++++.+.++
T Consensus 309 -----~p~~y~il~i~~~~~~~~~~~~~l~ 333 (443)
T 2xmo_A 309 -----FPHKYGNITYSAKNKNFTYQSQKLD 333 (443)
T ss_dssp -----TTCEEEEEEEETTTTEEEEEEEECC
T ss_pred -----CCCCeEEEEEeCCCceEEEEEEEEe
Confidence 36899999999876 677777664
No 13
>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A 2r17_A
Probab=99.78 E-value=2.8e-19 Score=153.49 Aligned_cols=175 Identities=13% Similarity=0.155 Sum_probs=105.6
Q ss_pred cCCCCCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccC
Q psy11941 15 EYDDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIG 94 (313)
Q Consensus 15 ~~~~~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~ 94 (313)
.+...+||||+++||+|++..... .. +.+.+.+.+.++|+|+++||+++ ..+++.|+++
T Consensus 4 ~~~~~~mm~i~~iSD~H~~~~~~~------~~---~~l~~~~~~~~~d~ii~~GDl~~---------~~~~~~l~~~--- 62 (192)
T 1z2w_A 4 EFGTRDRMLVLVLGDLHIPHRCNS------LP---AKFKKLLVPGKIQHILCTGNLCT---------KESYDYLKTL--- 62 (192)
T ss_dssp -------CEEEEECCCCBTTTCSS------CC---HHHHTTCCTTSCSEEEECSCCBS---------HHHHHHHHHH---
T ss_pred ccCcccceEEEEEecCCCCccchh------HH---HHHHHHhccCCCCEEEEcCCCCC---------HHHHHHHHhc---
Confidence 345667899999999998753211 11 12223333568999999999995 2334455543
Q ss_pred CCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEecccccCCceeeecEE
Q psy11941 95 DRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLI 174 (313)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (313)
..|+++|+||||..... . . ...
T Consensus 63 ------------------------------~~~~~~v~GNhD~~~~l------------p---------~-------~~~ 84 (192)
T 1z2w_A 63 ------------------------------AGDVHIVRGDFDENLNY------------P---------E-------QKV 84 (192)
T ss_dssp ------------------------------CSEEEECCCTTCCCTTS------------C---------S-------EEE
T ss_pred ------------------------------CCCEEEEcCCcCccccC------------C---------c-------ceE
Confidence 35899999999986510 0 0 000
Q ss_pred EeeCCeEEEEEecCCCchHHHHHHhhhcchhccCCCCCCCcceEEEeeccccCCC-CcCccccccCCCcccEEEeCCccC
Q psy11941 175 IQKNETKVAIFGLGYVKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERG-TVKNIAEDSIPSFFHFILWGHEHE 253 (313)
Q Consensus 175 l~~~~~~~~i~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~-~~~~~~~~~~~~~~d~v~~GH~H~ 253 (313)
+. ..+ .+|+++|+...... ....+...+...++|++++||+|.
T Consensus 85 ~~-----------------------------------~~~-~~i~l~Hg~~~~~~~~~~~l~~~~~~~~~d~vi~GHtH~ 128 (192)
T 1z2w_A 85 VT-----------------------------------VGQ-FKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHK 128 (192)
T ss_dssp EE-----------------------------------ETT-EEEEEECSCCCCBTTCHHHHHHHHHHHSSSEEECCSSCC
T ss_pred EE-----------------------------------ECC-EEEEEECCCcCCCCCCHHHHHHHHHhcCCCEEEECCcCc
Confidence 10 012 67888887543211 101111111124689999999999
Q ss_pred ccccCCCCCCCcccEEecCCCcee-ccccCccccccEEEEEEeCCceeEEEEeCCCC
Q psy11941 254 CRIKPEYNTKQRFHVCQPGSPVAT-SLCAGEAVQKKCGILMCNKQNYKLVPRSLETV 309 (313)
Q Consensus 254 ~~~~~~~~~~~~~~i~~~GS~~~~-~~~e~~~~~~g~~vv~~~~~~~~~~~i~l~~~ 309 (313)
+.... .++..++||||+... ...+. ..+++|.+++++++.+++++++++..
T Consensus 129 ~~~~~----~~~~~~inpGS~~~~~~~~~~-~~~~~y~il~~~~~~~~~~~~~~~~~ 180 (192)
T 1z2w_A 129 FEAFE----HENKFYINPGSATGAYNALET-NIIPSFVLMDIQASTVVTYVYQLIGD 180 (192)
T ss_dssp CEEEE----ETTEEEEECCCTTCCCCSSCS-CCCCEEEEEEEETTEEEEEEEEEETT
T ss_pred CccEe----ECCEEEEECCcccccCCCCCc-CCCCcEEEEEEECCEEEEEEEEccCC
Confidence 87642 256789999997543 21121 24689999999999999999988754
No 14
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12
Probab=99.76 E-value=4.5e-18 Score=155.17 Aligned_cols=238 Identities=13% Similarity=0.057 Sum_probs=134.7
Q ss_pred CCeEEEEEeeccccCcccCCc-------CccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCC----CHHHHHHHHHH
Q psy11941 19 RNTIRIMIASDIHLGYLETDR-------ERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKP----SPTTLKKCLET 87 (313)
Q Consensus 19 ~~~mkilh~SD~Hlg~~~~~~-------~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~----~~~~~~~~~~~ 87 (313)
...|||+|+||+|++...... ....+....|+++++.+.+.++|+||++||+++.... ..+.+..+.+.
T Consensus 3 ~~~~~i~~isD~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~vi~~GD~~~~~~~~~~~~~~~~~~~~~~ 82 (322)
T 2nxf_A 3 DPVFTFGLIADVQYADIEDGENYLRTRRRYYRGSADLLRDAVLQWRRERVQCVVQLGDIIDGHNRRRDASDRALDTVMAE 82 (322)
T ss_dssp CCSEEEEEECCCCBCSSCCEECTTSSSEECTTHHHHHHHHHHHHHHHTTCSEEEECSCCBCTHHHHTTCHHHHHHHHHHH
T ss_pred CCceEEEEEeeccccccCcccccccchHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCccCCCCCcchHHHHHHHHHHHH
Confidence 357999999999999753221 1233456778899999888999999999999987531 12455666666
Q ss_pred HHHhccCCCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCee-----Eecc-
Q psy11941 88 LRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVN-----YFGK- 161 (313)
Q Consensus 88 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~-----~~~~- 161 (313)
|++ .++|+++++||||..... ...+....+... ....
T Consensus 83 l~~---------------------------------~~~p~~~v~GNHD~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 125 (322)
T 2nxf_A 83 LDA---------------------------------CSVDVHHVWGNHEFYNFS----RPSLLSSRLNSAQRTGTDTGSD 125 (322)
T ss_dssp HHT---------------------------------TCSEEEECCCHHHHHHCC----HHHHHTSTTCCCC------CEE
T ss_pred HHh---------------------------------cCCcEEEecCCCCcccCC----HHHHhhhhCCcccccccccccc
Confidence 662 457999999999984210 001111111000 0000
Q ss_pred cccCCceeeecEEEee-CCeEEEEEec---------------------------------------------------CC
Q psy11941 162 CTNLNEITLNPLIIQK-NETKVAIFGL---------------------------------------------------GY 189 (313)
Q Consensus 162 ~~~~~~~~~~~~~l~~-~~~~~~i~gl---------------------------------------------------~~ 189 (313)
...... ....+.. ++ +.++++ +.
T Consensus 126 ~~~~~~---~~y~~~~~~~--~~~i~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~ 200 (322)
T 2nxf_A 126 LIGDDI---YAYEFSPAPN--FRFVLLDAYDLSVIGREEESEKHTHSWRILTQHNHNLQDLNLPPVSVGLEQRFVKFNGG 200 (322)
T ss_dssp CGGGTC---CCEEEEEETT--EEEEECCTTSBCSSSSCTTSHHHHHHHHHHHHHCCCTTCTTSCSCSSSGGGGCSTTCCB
T ss_pred cCCCCc---eEEEEecCCC--EEEEEEcCceecccccCCCChhhHHHHHHHhhcCcccccccCccccccccccccccCCc
Confidence 000000 0011111 11 112111 22
Q ss_pred CchHHHHHHhhhcchhccCCCCCCCcceEEEeeccccCCCCcC--cc-c-c---ccC-CC-cccEEEeCCccCccccCCC
Q psy11941 190 VKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTVK--NI-A-E---DSI-PS-FFHFILWGHEHECRIKPEY 260 (313)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~~~--~~-~-~---~~~-~~-~~d~v~~GH~H~~~~~~~~ 260 (313)
+...++.|+.+.+... ...+...|+++|+++...+... .. . . .++ .. +++++++||+|.......
T Consensus 201 ~~~~q~~wL~~~L~~~-----~~~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~ll~~~~~v~~~~~GH~H~~~~~~~- 274 (322)
T 2nxf_A 201 FSEQQLQWLDAVLTLS-----DHKQERVLIFSHLPVHPCAADPICLAWNHEAVLSVLRSHQSVLCFIAGHDHDGGRCTD- 274 (322)
T ss_dssp CCHHHHHHHHHHHHHH-----HHHTCEEEEEESSCCCTTSSCGGGSCTTHHHHHHHHHTCTTEEEEEECSCTTCEEEEC-
T ss_pred cCHHHHHHHHHHHHHH-----HhcCCcEEEEEccCCCCCCCCccccccCHHHHHHHHhcCCCeEEEEcCCcCCCCceec-
Confidence 3356666765543210 0113467999999876443211 01 0 0 112 22 588999999999887531
Q ss_pred CCCCcccEEecCCCceeccccCccccccEEEEEEeCCceeEEEEeCCCCCC
Q psy11941 261 NTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPRSLETVRP 311 (313)
Q Consensus 261 ~~~~~~~i~~~GS~~~~~~~e~~~~~~g~~vv~~~~~~~~~~~i~l~~~r~ 311 (313)
.++..++++|+.... ...+.+|.+++++++.+.++..--.+.|.
T Consensus 275 --~~g~~~i~~~~~~~~-----~~~~~~y~~v~~~~~~~~~~~~~~~~~~~ 318 (322)
T 2nxf_A 275 --SSGAQHITLEGVIET-----PPHSHAFATAYLYEDRMVMKGRGRVEDLT 318 (322)
T ss_dssp --TTSCEEEECCCGGGC-----CTTSCEEEEEEECSSEEEEEEEETSCCEE
T ss_pred --cCCceEEEecchhhC-----CCCCCcEEEEEEECCeEEEEeccccCCce
Confidence 134556666665321 12568999999999988887766555454
No 15
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7
Probab=99.75 E-value=3e-18 Score=149.76 Aligned_cols=89 Identities=15% Similarity=0.097 Sum_probs=59.4
Q ss_pred ceEEEeeccccCCC-CcCccccccCCCcccEEEeCCccCccccCCCCCCCcccEEecCCCcee-ccccCccccccEEEEE
Q psy11941 216 IYILVLHQNRPERG-TVKNIAEDSIPSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVAT-SLCAGEAVQKKCGILM 293 (313)
Q Consensus 216 ~~Ilv~H~~~~~~~-~~~~~~~~~~~~~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS~~~~-~~~e~~~~~~g~~vv~ 293 (313)
.+|+++|+...... ....+...+...++|++++||+|.+.... .++..++||||+... ...+. ..+++|.+++
T Consensus 114 ~~i~l~Hg~~~~~~~~~~~l~~~~~~~~~d~vl~GHtH~~~~~~----~~~~~~inpGS~~~~~~~~~~-~~~~~y~il~ 188 (215)
T 2a22_A 114 FKIGLMHGNQVLPWDDPGSLEQWQRRLDCDILVTGHTHKLRVFE----KNGKLFLNPGTATGAFSALTP-DAPPSFMLMA 188 (215)
T ss_dssp EEEEEECSTTSSSTTCHHHHHHHHHHHTCSEEEECSSCCCEEEE----ETTEEEEECCCSSCCCCTTST-TCCCEEEEEE
T ss_pred eEEEEEcCCccCCCCCHHHHHHHHhhcCCCEEEECCcCCCccEe----eCCEEEEECCcccccCCCCCC-CCCCcEEEEE
Confidence 78999997653211 11111111112468999999999987642 256789999997543 21122 2468999999
Q ss_pred EeCCceeEEEEeCCCC
Q psy11941 294 CNKQNYKLVPRSLETV 309 (313)
Q Consensus 294 ~~~~~~~~~~i~l~~~ 309 (313)
++++.+++++++++..
T Consensus 189 i~~~~i~~~~~~~~~~ 204 (215)
T 2a22_A 189 LQGNKVVLYVYDLRDG 204 (215)
T ss_dssp EETTEEEEEEEEEETT
T ss_pred EeCCcEEEEEEEecCC
Confidence 9999999999988753
No 16
>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima}
Probab=99.73 E-value=1.5e-17 Score=141.35 Aligned_cols=76 Identities=18% Similarity=0.206 Sum_probs=52.5
Q ss_pred ceEEEeeccccCCCCcCccccccCCCcccEEEeCCccCccccCCCCCCCcccEEecCCCceeccccCccccccEEEEEEe
Q psy11941 216 IYILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCN 295 (313)
Q Consensus 216 ~~Ilv~H~~~~~~~~~~~~~~~~~~~~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS~~~~~~~e~~~~~~g~~vv~~~ 295 (313)
.+|+++|+.....+....+.. .+..++|++++||+|.+.... .++..++||||+.. ++|.+++++
T Consensus 103 ~~i~l~HG~~~~~~~~~~~~~-~~~~~~d~vi~GHtH~~~~~~----~~~~~~iNpGS~~~----------~sy~il~~~ 167 (178)
T 2kkn_A 103 VTIGMCHGWGAPWDLKDRLLK-VFNEKPQVILFGHTHEPEDTV----KAGVRFLNPGSLAE----------GSYAVLELD 167 (178)
T ss_dssp EEEEECCSCCCHHHHHHHHHH-HSSSCCSEEECCSCSSCCEEE----ETTEEEECCCCTTT----------TEEEEEEEE
T ss_pred EEEEEECCCCCCCCHHHHHHH-HhccCCCEEEECccCCCCeEE----eCCEEEEECCCCCC----------CeEEEEEEC
Confidence 678888875321000001111 122568999999999988642 25678999999543 789999999
Q ss_pred CCceeEEEEeC
Q psy11941 296 KQNYKLVPRSL 306 (313)
Q Consensus 296 ~~~~~~~~i~l 306 (313)
++.+++++++|
T Consensus 168 ~~~~~~~~~~l 178 (178)
T 2kkn_A 168 GGEVRFELKTL 178 (178)
T ss_dssp TTEEEEEEEEC
T ss_pred CCEEEEEEEeC
Confidence 99999999876
No 17
>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid phosphatase metalloenzyme, uteroferrin, hydrolase; HET: NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A* 2bq8_X 1qfc_A* 1qhw_A*
Probab=99.72 E-value=2e-17 Score=150.42 Aligned_cols=242 Identities=15% Similarity=0.125 Sum_probs=126.6
Q ss_pred CCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCce
Q psy11941 19 RNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSV 98 (313)
Q Consensus 19 ~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~ 98 (313)
...|||+++||+|++....- .........+.+.+.+.+.++|+||++||++............+.+.+.++.
T Consensus 4 ~~~~~~~~isD~h~~~~~~~--~~~~~~~~~~~l~~~~~~~~~d~vv~~GD~~~~~g~~~~~~~~~~~~~~~~~------ 75 (313)
T 1ute_A 4 TPILRFVAVGDWGGVPNAPF--HTAREMANAKAIATTVKTLGADFILSLGDNFYFTGVHDAKDKRFQETFEDVF------ 75 (313)
T ss_dssp CCCEEEEEECSCCCCSSTTS--SCHHHHHHHHHHHHHHHHHCCSEEEECSCCSTTTCCSSTTCTHHHHHTTTTS------
T ss_pred CCceEEEEEcccCCCCCccc--cCchHHHHHHHHHHHHHhcCCCEEEECCCccCcCCCCCcchHHHHHHHHHHc------
Confidence 46899999999998864210 0111222334444446678999999999997542111001112223333211
Q ss_pred eeeeccCcccccccCCCccCCCCCCC-CCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEecccccCCc-eeeecEEEe
Q psy11941 99 FIDVISDPKLVMCNDHVNYMDPNLNI-SLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNE-ITLNPLIIQ 176 (313)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~l~ 176 (313)
+. + .. ++|+++++||||....... ...+..... +|..... +.+ .+.+.
T Consensus 76 -----~~--------------~--~l~~~p~~~v~GNHD~~~~~~~--~~~~~~~~~------~~~~~~~~y~~-~~~~~ 125 (313)
T 1ute_A 76 -----SD--------------P--SLRNVPWHVLAGNHDHLGNVSA--QIAYSKISK------RWNFPSPYYRL-RFKIP 125 (313)
T ss_dssp -----CS--------------G--GGTTCCEEECCCHHHHHSCHHH--HHHGGGTST------TEECCSSSEEE-EEECT
T ss_pred -----Cc--------------h--hhcCCCEEEECCCCccCCCccc--cccccccCC------CccCcccceEE-EEecC
Confidence 00 0 13 5899999999998653110 011111000 0100000 000 00011
Q ss_pred eCCeEEEEEecCC----------------------CchHHHHHHhhhcchhccCCCCCCCcceEEEeeccccCCCCcC--
Q psy11941 177 KNETKVAIFGLGY----------------------VKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTVK-- 232 (313)
Q Consensus 177 ~~~~~~~i~gl~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~~~-- 232 (313)
.++..+.++++.. ...+++.|+.+.+.. ..+..+|+++|+++...+...
T Consensus 126 ~~~~~~~~i~lds~~~~~~~~~~~~~~~~~~~~~~~~~~q~~wL~~~L~~-------~~~~~~iv~~H~p~~~~~~~~~~ 198 (313)
T 1ute_A 126 RSNVSVAIFMLDTVTLCGNSDDFVSQQPERPRNLALARTQLAWIKKQLAA-------AKEDYVLVAGHYPVWSIAEHGPT 198 (313)
T ss_dssp TSSCEEEEEECCHHHHHCCGGGSTTCSCCSCSCHHHHHHHHHHHHHHHHH-------CCCSEEEEECSSCSSCCSSSCCC
T ss_pred CCCceEEEEEEEChHHhCcCccccccccCCccccchHHHHHHHHHHHHHh-------CCCCeEEEEECCCCccCCCCCCc
Confidence 1113555655531 123566666544321 123589999999986543210
Q ss_pred -----ccccccCCCcccEEEeCCccCccccCCCCCCCcccEEecCCCceec---------------cccCc-cccccEEE
Q psy11941 233 -----NIAEDSIPSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATS---------------LCAGE-AVQKKCGI 291 (313)
Q Consensus 233 -----~~~~~~~~~~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS~~~~~---------------~~e~~-~~~~g~~v 291 (313)
.+...+...+++++++||+|..+.... ..+..++++||..... |..+. ....||.+
T Consensus 199 ~~~~~~l~~~l~~~~v~~~l~GH~H~~~~~~~---~~g~~~i~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gy~~ 275 (313)
T 1ute_A 199 HCLVKQLLPLLTTHKVTAYLCGHDHNLQYLQD---ENGLGFVLSGAGNFMDPSKKHLRKVPNGYLRFHFGAENSLGGFAY 275 (313)
T ss_dssp HHHHHHTHHHHHHTTCSEEEECSSSSEEEEEC---TTCCEEEEECBSSCCCCCCTTGGGSCTTCEEEEECCTTSCCEEEE
T ss_pred HHHHHHHHHHHHHcCCcEEEECChhhhhhccC---CCCceEEEECCCcCcCccccccccCCCcccceeccCcCCCCceEE
Confidence 011112234689999999998765421 2345667788754321 11100 12379999
Q ss_pred EEEeCCceeEEEEeCCC
Q psy11941 292 LMCNKQNYKLVPRSLET 308 (313)
Q Consensus 292 v~~~~~~~~~~~i~l~~ 308 (313)
++++++.+.++++.++.
T Consensus 276 l~v~~~~~~~~~~~~~g 292 (313)
T 1ute_A 276 VEITPKEMSVTYIEASG 292 (313)
T ss_dssp EEECSSCEEEEEEETTS
T ss_pred EEEEcCEEEEEEEcCCC
Confidence 99999999999998853
No 18
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=99.71 E-value=3.9e-17 Score=140.09 Aligned_cols=162 Identities=21% Similarity=0.324 Sum_probs=103.6
Q ss_pred eEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceee
Q psy11941 21 TIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFI 100 (313)
Q Consensus 21 ~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 100 (313)
||||+++||+|.. ...++++++.+.+.++|+|+++||+++. + +++.|+
T Consensus 25 ~m~i~~iSD~Hg~------------~~~l~~~l~~~~~~~~D~ii~~GDl~~~-----~----~~~~l~----------- 72 (190)
T 1s3l_A 25 HMKIGIMSDTHDH------------LPNIRKAIEIFNDENVETVIHCGDFVSL-----F----VIKEFE----------- 72 (190)
T ss_dssp -CEEEEECCCTTC------------HHHHHHHHHHHHHSCCSEEEECSCCCST-----H----HHHHGG-----------
T ss_pred CeEEEEEeeCCCC------------HHHHHHHHHHHhhcCCCEEEECCCCCCH-----H----HHHHHH-----------
Confidence 5999999999921 2457888888888999999999999862 2 333343
Q ss_pred eeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEecccccCCceeeecEEEeeCCe
Q psy11941 101 DVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNET 180 (313)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (313)
+.+.|+++|+||||.... ....++...+ + +.+
T Consensus 73 ----------------------~l~~~~~~V~GNhD~~~~----~~~~~~~~~~-------~---~~l------------ 104 (190)
T 1s3l_A 73 ----------------------NLNANIIATYGNNDGERC----KLKEWLKDIN-------E---ENI------------ 104 (190)
T ss_dssp ----------------------GCSSEEEEECCTTCCCHH----HHHHHHHHHC-------T---TCE------------
T ss_pred ----------------------hcCCCEEEEeCCCcchHH----HHHHHhcccC-------h---hhh------------
Confidence 234699999999998652 0111111110 0 000
Q ss_pred EEEEEecCCCchHHHHHHhhhcchhccCCCCCCCcceEEEeeccccCCCCcCccccccCCC-cccEEEeCCccCccccCC
Q psy11941 181 KVAIFGLGYVKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTVKNIAEDSIPS-FFHFILWGHEHECRIKPE 259 (313)
Q Consensus 181 ~~~i~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~~~~~~~~~~~~-~~d~v~~GH~H~~~~~~~ 259 (313)
...+. .+ . . +..+|+++|++... +...+... ++|++++||+|.++...
T Consensus 105 ----~~~~~-------------~~---~---~-~~~~ill~Hg~~~~------l~~~~~~~~~~d~vl~GHtH~~~~~~- 153 (190)
T 1s3l_A 105 ----IDDFI-------------SV---E---I-DDLKFFITHGHHQS------VLEMAIKSGLYDVVIYGHTHERVFEE- 153 (190)
T ss_dssp ----EESEE-------------EE---E---E-TTEEEEEEESCCHH------HHHHHHHHSCCSEEEEECSSCCEEEE-
T ss_pred ----cccce-------------EE---e---e-CCcEEEEECCChHH------HHHHHHhcCCCCEEEECCCCCcceEE-
Confidence 00000 00 0 1 23899999997432 11112222 68999999999998753
Q ss_pred CCCCCcccEEecCCCceeccccCccccccEEEEEEeCCceeE
Q psy11941 260 YNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKL 301 (313)
Q Consensus 260 ~~~~~~~~i~~~GS~~~~~~~e~~~~~~g~~vv~~~~~~~~~ 301 (313)
.++..++||||+.+ + . ..+++|.+++++++.+++
T Consensus 154 ---~~~~~~iNpGs~~~-r-~---~~~~~y~il~~~~~~v~~ 187 (190)
T 1s3l_A 154 ---VDDVLVINPGECCG-Y-L---TGIPTIGILDTEKKEYRE 187 (190)
T ss_dssp ---ETTEEEEECCCSSC-T-T---TSCCEEEEEETTTTEEEE
T ss_pred ---ECCEEEEECCcccc-c-C---CCCCEEEEEEcCCCcEEE
Confidence 25678999999876 2 2 246899999998775444
No 19
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7
Probab=99.66 E-value=1.3e-15 Score=132.47 Aligned_cols=179 Identities=18% Similarity=0.245 Sum_probs=106.7
Q ss_pred HhhcccCCCCCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCC--HH--HHHHHH
Q psy11941 10 KQEEVEYDDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPS--PT--TLKKCL 85 (313)
Q Consensus 10 ~~~~~~~~~~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~--~~--~~~~~~ 85 (313)
.+....++...||||+++||+|... ..++++++.+++.++|.|+++||+++.+... .+ ....+.
T Consensus 14 ~~~~~~~~~~~mmki~~iSD~H~~~------------~~l~~~l~~~~~~~~d~vi~~GDl~~~g~~~~~~~~~~~~~~~ 81 (208)
T 1su1_A 14 GTENLYFQSNAMMKLMFASDIHGSL------------PATERVLELFAQSGAQWLVILGDVLNHGPRNALPEGYAPAKVV 81 (208)
T ss_dssp -----------CCEEEEECCCTTBH------------HHHHHHHHHHHHHTCSEEEECSCCSCCCTTSCCCTTBCHHHHH
T ss_pred CcccceecccccEEEEEEEcCCCCH------------HHHHHHHHHHHhcCCCEEEECCCccccCcccccccccCHHHHH
Confidence 4555566777789999999999643 3578888888888999999999999875421 01 135566
Q ss_pred HHHHHhccCCCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEecccccC
Q psy11941 86 ETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNL 165 (313)
Q Consensus 86 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 165 (313)
+.|++ .+.|+++|+||||.... ..+.. +...
T Consensus 82 ~~l~~---------------------------------~~~~v~~V~GNHD~~~~-------~~~~~---------~~~~ 112 (208)
T 1su1_A 82 ERLNE---------------------------------VAHKVIAVRGNCDSEVD-------QMLLH---------FPIT 112 (208)
T ss_dssp HHHHT---------------------------------TGGGEEECCCTTCCHHH-------HHHSS---------SCCC
T ss_pred HHHHh---------------------------------cCCceEEEECCCchHHH-------Hhhhh---------cccc
Confidence 67763 23699999999997431 11111 0000
Q ss_pred CceeeecEEEeeCCeEEEEEecCCCchHHHHHHhhhcchhccCCCCCCCcceEEEeeccccCCCCcCccccccCCCcccE
Q psy11941 166 NEITLNPLIIQKNETKVAIFGLGYVKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTVKNIAEDSIPSFFHF 245 (313)
Q Consensus 166 ~~~~~~~~~l~~~~~~~~i~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~~~~~~~~~~~~~~d~ 245 (313)
. . .. . + . ..+ .+|+++|++..... .+. .+ .. .|+
T Consensus 113 ~------------~-~~-~-------------------~---~---~~g-~~i~l~Hg~~~~~~---~l~-~~-~~-~d~ 146 (208)
T 1su1_A 113 A------------P-WQ-Q-------------------V---L---LEK-QRLFLTHGHLFGPE---NLP-AL-NQ-NDV 146 (208)
T ss_dssp C------------S-EE-E-------------------E---E---CSS-CEEEEECSSSSBTT---BCC-CC-CT-TCE
T ss_pred C------------c-eE-E-------------------E---E---ECC-cEEEEECCCCCCcc---hhh-hh-cC-CCE
Confidence 0 0 00 0 0 0 113 78999999764311 111 11 22 499
Q ss_pred EEeCCccCccccCCCCCCCcccEEecCCCceeccccCccccccEEEEEEeCCceeEEEEeCC
Q psy11941 246 ILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPRSLE 307 (313)
Q Consensus 246 v~~GH~H~~~~~~~~~~~~~~~i~~~GS~~~~~~~e~~~~~~g~~vv~~~~~~~~~~~i~l~ 307 (313)
+++||+|.+.... .++..++||||...... . .+.+|++++. + +++++.++
T Consensus 147 vi~GHtH~~~~~~----~~~~~~iNpGs~~~pr~---~-~~~sy~il~~--~--~~~~~~~~ 196 (208)
T 1su1_A 147 LVYGHTHLPVAEQ----RGEIFHFNPGSVSIPKG---G-NPASYGMLDN--D--VLSVIALN 196 (208)
T ss_dssp EECCSSCCCEEEE----ETTEEEEECCCSSCCCT---T-CCCEEEEEET--T--EEEEEETT
T ss_pred EEECCcccCccEE----eCCEEEEECCCCcCCCC---C-CCCEEEEEEC--C--eEEEEEeC
Confidence 9999999987653 25678899999764321 1 3578998884 2 45556654
No 20
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A
Probab=99.65 E-value=2.1e-16 Score=140.59 Aligned_cols=212 Identities=9% Similarity=0.025 Sum_probs=113.2
Q ss_pred eEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHH---hc--CCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCC
Q psy11941 21 TIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQAL---DQ--EVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGD 95 (313)
Q Consensus 21 ~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~---~~--~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~ 95 (313)
||||+++||+|... ..|+++++.+. +. ++|.||++||+++.+..+.+ +++.|+++.
T Consensus 1 mm~i~~isD~H~~~------------~~l~~~l~~~~~~~~~~~~~d~ii~~GD~~~~g~~~~~----~~~~l~~l~--- 61 (252)
T 1nnw_A 1 MVYVAVLANIAGNL------------PALTAALSRIEEMREEGYEIEKYYILGNIVGLFPYPKE----VIEVIKDLT--- 61 (252)
T ss_dssp -CEEEEEECCTTCH------------HHHHHHHHHHHHHHHTTCCEEEEEEESCSSSSSSCHHH----HHHHHHHHH---
T ss_pred CcEEEEEeecCCCH------------HHHHHHHHHHHhhhhccCCCCEEEEeCccCCCCCCHHH----HHHHHHhhH---
Confidence 79999999999432 35677887777 76 89999999999988754323 334444331
Q ss_pred CceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEecccccCCceeeecEEE
Q psy11941 96 RSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLII 175 (313)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 175 (313)
...++++|+||||....... ...+. . .+.. ...+.....
T Consensus 62 ----------------------------~~~~~~~v~GNhD~~~~~~~-------~~~~~---~-~~~~--~~~~~~~~~ 100 (252)
T 1nnw_A 62 ----------------------------KKENVKIIRGKYDQIIAMSD-------PHATD---P-GYID--KLELPGHVK 100 (252)
T ss_dssp ----------------------------HHSCEEEECCHHHHHHHHSC-------TTCSS---S-GGGG--GSSCCHHHH
T ss_pred ----------------------------hhcCeeEEecchHHHhhccc-------cccCC---c-cccc--chhhhHHHH
Confidence 11479999999997542100 00000 0 0000 000000000
Q ss_pred eeCCeEEEEEecCCCchHHHHHHhhhcchhccCCCCCCCcceEEEeecccc-CCCCc--C-----ccccccCCC-cccEE
Q psy11941 176 QKNETKVAIFGLGYVKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRP-ERGTV--K-----NIAEDSIPS-FFHFI 246 (313)
Q Consensus 176 ~~~~~~~~i~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~-~~~~~--~-----~~~~~~~~~-~~d~v 246 (313)
.... +..+...++++.|+... .. ......+..+|+++|+++. ..... . .+...+... +++++
T Consensus 101 --~~~~---~~~~~l~~~~~~~L~~l-p~---~~~~~~~~~~i~~~H~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v 171 (252)
T 1nnw_A 101 --KALK---FTWEKLGHEGREYLRDL-PI---YLVDKIGGNEVFGVYGSPINPFDGEVLAEQPTSYYEAIMRPVKDYEML 171 (252)
T ss_dssp --HHHH---HHHHHHHHHHHHHHHTS-CS---CEEEEETTEEEEEESSCSSCTTTCCCCSSCCHHHHHHHHGGGTTSSEE
T ss_pred --HHHH---HHHHHCCHHHHHHHHhC-Cc---eEEEeeCCcEEEEEcCCCCCCcccccCCCCCHHHHHHHHhcCCCCCEE
Confidence 0000 00011122333332211 00 0000002268999999762 22110 0 011111123 78999
Q ss_pred EeCCccCccccCCCCCCCcccEEecCCCceeccccCccccccEEEEEEeCCceeEEEEeCCC
Q psy11941 247 LWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPRSLET 308 (313)
Q Consensus 247 ~~GH~H~~~~~~~~~~~~~~~i~~~GS~~~~~~~e~~~~~~g~~vv~~~~~~~~~~~i~l~~ 308 (313)
++||+|.+.... .++..+++|||.... +. .....+|.++++++..+++..++++.
T Consensus 172 i~GHtH~~~~~~----~~~~~~in~Gs~~~~-~~--~~~~~~y~il~~~~~~v~~~~v~yd~ 226 (252)
T 1nnw_A 172 IVASPMYPVDAM----TRYGRVVCPGSVGFP-PG--KEHKATFALVDVDTLKPKFIEVEYDK 226 (252)
T ss_dssp EESTTCSEEEEE----ETTEEEEEECCSSSC-SS--SSCCEEEEEEETTTCCEEEEEECCCS
T ss_pred EECCccccceEe----cCCeEEEECCCccCC-CC--CCCcceEEEEECCCCeEEEEEeCCCH
Confidence 999999988653 245678999996542 22 12356899999988778888777753
No 21
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric AP4A hydrolase, phosphodiesterase, binding, Mn2+ binding, hydrolase; 1.90A {Streptococcus pneumoniae} PDB: 3qfn_A 3qfo_A*
Probab=99.64 E-value=8.5e-16 Score=138.83 Aligned_cols=208 Identities=16% Similarity=0.177 Sum_probs=116.2
Q ss_pred CCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCce
Q psy11941 19 RNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSV 98 (313)
Q Consensus 19 ~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~ 98 (313)
..|+||+++||+|.. +.+|+++++.+.+.++|.|+++||+++.+..+ ..+++.|++
T Consensus 9 ~~~~~i~~iSDiHg~------------~~~l~~vl~~~~~~~~D~ii~~GDlv~~g~~~----~~~~~~l~~-------- 64 (270)
T 3qfm_A 9 MDMTKIALLSDIHGN------------TTALEAVLADARQLGVDEYWLLGDILMPGTGR----RRILDLLDQ-------- 64 (270)
T ss_dssp --CEEEEEECCCTTC------------HHHHHHHHHHHHHTTCCEEEECSCCSSSSSCS----HHHHHHHHT--------
T ss_pred ccccEEEEEecCCCC------------HHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCH----HHHHHHHHc--------
Confidence 458999999999932 24688999999999999999999999987654 334456653
Q ss_pred eeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhh-CCCeeEecccccCCceeeecEEEee
Q psy11941 99 FIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSN-SGLVNYFGKCTNLNEITLNPLIIQK 177 (313)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~l~~ 177 (313)
. .|+++|+||||.... ..... .++ . ...... +.
T Consensus 65 -------------------------~-~~~~~v~GNhD~~~~-------~~~~~~~~~----~--~~~~~~------~~- 98 (270)
T 3qfm_A 65 -------------------------L-PITARVLGNWEDSLW-------HGVRKELDS----T--RPSQRY------LL- 98 (270)
T ss_dssp -------------------------S-CEEEECCCHHHHHHH-------HHHTTCSCT----T--SHHHHH------HH-
T ss_pred -------------------------c-CCEEEEcCChHHHHH-------HhhccccCC----C--cHHHHH------HH-
Confidence 2 278999999997531 11100 000 0 000000 00
Q ss_pred CCeEEEEEecCCCchHHHHHHhhhcchhccCCCCCCCcceEEEeeccccCC-CCc-------CccccccCCCcccEEEeC
Q psy11941 178 NETKVAIFGLGYVKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPER-GTV-------KNIAEDSIPSFFHFILWG 249 (313)
Q Consensus 178 ~~~~~~i~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~-~~~-------~~~~~~~~~~~~d~v~~G 249 (313)
...-+......++++.++..- .... . ....+ .+|+++|+.+... +.. ..+...+...++|++++|
T Consensus 99 ---~~~~~~~~~L~~~~~~~L~~L-P~~~-~-~~~~g-~~i~lvHg~p~~~~~~~~~~~~~~~~l~~~~~~~~~d~~i~G 171 (270)
T 3qfm_A 99 ---RQCQYVLEEISLEEIEVLHNQ-PLQI-H-RQFGD-LTVGISHHLPDKNWGRELIHTGKQEEFDRLVTHPPCDIAVYG 171 (270)
T ss_dssp ---HHHHHHHTTSCHHHHHHHHSC-CSEE-E-EEETT-EEEEEESSBTTBSSSSTTSTTCCHHHHHHTTTTTTCSEEECC
T ss_pred ---HHHHHHHHHcCHHHHHHHHhC-CCce-E-EEECC-cEEEEEECCCCCCCCceecCCCcHHHHHHHhcccCCCEEEEC
Confidence 000000112334444443321 0000 0 01123 7899999865421 110 001111223578999999
Q ss_pred CccCccccCCCCCCCcccEEecCCCceeccccC---ccccccEEEEEEeCCc-eeEEEEeC
Q psy11941 250 HEHECRIKPEYNTKQRFHVCQPGSPVATSLCAG---EAVQKKCGILMCNKQN-YKLVPRSL 306 (313)
Q Consensus 250 H~H~~~~~~~~~~~~~~~i~~~GS~~~~~~~e~---~~~~~g~~vv~~~~~~-~~~~~i~l 306 (313)
|+|.+.... ..++..++||||..+...+.. .....+|+++++++++ ++++++.+
T Consensus 172 HtH~~~~~~---~~~~~~~iNpGSvg~pr~~~~~~~~~~~asyaild~~~~~~~~v~~~rv 229 (270)
T 3qfm_A 172 HIHQQLLRY---GTGGQLIVNPGSIGQPFFLDAQLRKDLRAQYMILEFDDKGLVDMDFRRV 229 (270)
T ss_dssp SSCSEEEEE---CTTSCEEEEECCSSSCCCSSTTGGGCCCEEEEEEEEETTEEEEEEEEEE
T ss_pred CcCchHhee---ccCCEEEEECCCccCCCCCCccccCCCCCEEEEEEecCCCceEEEEEEe
Confidence 999887642 124678999999766544321 0135789999999864 45555443
No 22
>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae} SCOP: d.159.1.7
Probab=99.63 E-value=5.7e-15 Score=124.70 Aligned_cols=89 Identities=11% Similarity=0.035 Sum_probs=60.2
Q ss_pred ceEEEeeccccCCCC-cCccccccCCCcccEEEeCCccCccccCCCCCCCcccEEecCCCceeccccCccccccEEEEEE
Q psy11941 216 IYILVLHQNRPERGT-VKNIAEDSIPSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMC 294 (313)
Q Consensus 216 ~~Ilv~H~~~~~~~~-~~~~~~~~~~~~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS~~~~~~~e~~~~~~g~~vv~~ 294 (313)
.+|+++|+++..... ...+...+...++|++++||+|.+.... .++..+++|||+..... ....++|.++++
T Consensus 78 ~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~d~vi~GHtH~~~~~~----~~~~~~inpGs~~~~~~---~~~~~~y~il~~ 150 (176)
T 3ck2_A 78 TKIIQTHGHLFDINFNFQKLDYWAQEEEAAICLYGHLHVPSAWL----EGKILFLNPGSISQPRG---TIRECLYARVEI 150 (176)
T ss_dssp EEEEEECSGGGTTTTCSHHHHHHHHHTTCSEEECCSSCCEEEEE----ETTEEEEEECCSSSCCT---TCCSCCEEEEEE
T ss_pred eEEEEECCCccCCCCCHHHHHHHHHhcCCCEEEECCcCCCCcEE----ECCEEEEECCCCCcCCC---CCCCCeEEEEEE
Confidence 788999987643211 1111111223568999999999987642 25678899999764321 112379999999
Q ss_pred eCCceeEEEEeCCCCCCC
Q psy11941 295 NKQNYKLVPRSLETVRPF 312 (313)
Q Consensus 295 ~~~~~~~~~i~l~~~r~~ 312 (313)
+++.+++++++++. +++
T Consensus 151 ~~~~~~v~~~~~~~-~~~ 167 (176)
T 3ck2_A 151 DDSYFKVDFLTRDH-EVY 167 (176)
T ss_dssp CSSEEEEEEECTTS-CBC
T ss_pred cCCEEEEEEEEECC-EEc
Confidence 99999999999974 443
No 23
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural genomics, MCSG, Zn binding, hydrolase; 1.95A {Sphaerobacter thermophilus} SCOP: d.159.1.0
Probab=99.59 E-value=2.4e-15 Score=133.78 Aligned_cols=197 Identities=20% Similarity=0.186 Sum_probs=113.9
Q ss_pred CeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCcee
Q psy11941 20 NTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVF 99 (313)
Q Consensus 20 ~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 99 (313)
.+|||+++||+|... ..|+++++.+. ++|.++++||+++.+..+ ..+.+.|+.+
T Consensus 2 ~~mri~~isDiHg~~------------~~l~~~l~~~~--~~d~ii~~GDl~~~g~~~----~~~~~~l~~~-------- 55 (246)
T 3rqz_A 2 NAMRILIISDVHANL------------VALEAVLSDAG--RVDDIWSLGDIVGYGPRP----RECVELVRVL-------- 55 (246)
T ss_dssp CCCCEEEECCCTTCH------------HHHHHHHHHHC--SCSEEEECSCCSSSSSCH----HHHHHHHHHH--------
T ss_pred CCcEEEEEeecCCCH------------HHHHHHHHhcc--CCCEEEECCCcCCCCCCH----HHHHHHHHhc--------
Confidence 579999999999322 35777887776 899999999999987532 3345566543
Q ss_pred eeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEecccccCCceeeecEEEeeCC
Q psy11941 100 IDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNE 179 (313)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 179 (313)
+ .+++|+||||......... .. +..... . ..
T Consensus 56 -------------------------~-~~~~v~GNhD~~~~~~~~~-------~~----~~~~~~-~-------~~---- 86 (246)
T 3rqz_A 56 -------------------------A-PNISVIGNHDWACIGRLSL-------DE----FNPVAR-F-------AS---- 86 (246)
T ss_dssp -------------------------C-SSEECCCHHHHHHTCCCCC-------C------CGGGG-C-------HH----
T ss_pred -------------------------C-CCEEEeCchHHHHhccCCc-------cc----cCHHHH-H-------HH----
Confidence 1 3689999999765211000 00 000000 0 00
Q ss_pred eEEEEEecCCCchHHHHHHhhhcchhccCCCCCCCcceEEEeeccccCCCCcCccc------cccCCCcccEEEeCCccC
Q psy11941 180 TKVAIFGLGYVKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTVKNIA------EDSIPSFFHFILWGHEHE 253 (313)
Q Consensus 180 ~~~~i~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~~~~~~------~~~~~~~~d~v~~GH~H~ 253 (313)
-+.......+...++... |.... .-.++++|+.+..... .++. ..+...+.|++++||+|.
T Consensus 87 ----~~~~~~l~~~~~~~L~~l-------p~~~~-~~~i~~~Hg~p~~~~~-~~~~~~~~~~~~l~~~~~~l~i~GHtH~ 153 (246)
T 3rqz_A 87 ----YWTTMQLQAEHLQYLESL-------PNRMI-DGDWTVVHGSPRHPIW-EYIYNARIAALNFPAFDTPLCFVGHTHV 153 (246)
T ss_dssp ----HHHHHHCCHHHHHHHHHC-------CSEEE-ETTEEEESSCSSSTTT-CCCCSHHHHHHHGGGCCSSEEECCSSSS
T ss_pred ----HHHHHHcCHHHHHHHHhC-------CcEEE-ECCEEEEECCcCCccc-cccCChHHHHHHHhccCCCEEEECCcCc
Confidence 000011233444443321 11001 1268999997653211 1111 112234679999999999
Q ss_pred ccccCC----------CC-------CCCcccEEecCCCceeccccCccccccEEEEEEeCCceeEEEEeCC
Q psy11941 254 CRIKPE----------YN-------TKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPRSLE 307 (313)
Q Consensus 254 ~~~~~~----------~~-------~~~~~~i~~~GS~~~~~~~e~~~~~~g~~vv~~~~~~~~~~~i~l~ 307 (313)
+..... .. -..+..++||||..+.. + + ....+|.+++.+++.+++..+|++
T Consensus 154 p~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ivNpGSVG~Pr-d-g-~p~A~Y~i~d~~~~~v~~~rv~Yd 221 (246)
T 3rqz_A 154 PLYIREDEALSNVAPHHPNDGEVLDVSSGRYIINPGAVGQPR-D-G-DPRASYAIFEPDAQRVTFHRVEYR 221 (246)
T ss_dssp EEEEEHHHHHTTCCCBCCCTTCEEECSSSCEEEEECCSSCCC-S-S-CCSEEEEEEEGGGTEEEEEEECCC
T ss_pred ccEEEecccccccccccccccceeecCCCeEEEECCccCCCC-C-c-CCcceEEEEECCCCEEEEEEeCCC
Confidence 865320 00 01237899999975543 2 2 245689999998888888888876
No 24
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*
Probab=99.57 E-value=3.4e-14 Score=129.42 Aligned_cols=209 Identities=14% Similarity=0.039 Sum_probs=112.4
Q ss_pred CCCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCc
Q psy11941 18 DRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRS 97 (313)
Q Consensus 18 ~~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~ 97 (313)
..+.|||+++||+|..... + .-.++|+||++||+++.+.. +.++.+.++|+++.
T Consensus 56 ~~~~mri~~iSD~H~~~~~------------l-------~i~~~D~vi~aGDl~~~g~~--~e~~~~~~~L~~l~----- 109 (296)
T 3rl5_A 56 PAGHTRFVCISDTRSRTDG------------I-------QMPYGDILLHTGDFTELGLP--SEVKKFNDWLGNLP----- 109 (296)
T ss_dssp CTTEEEEEEEBCCTTCCTT------------C-------CCCSCSEEEECSCCSSSCCH--HHHHHHHHHHHTSC-----
T ss_pred CCCCeEEEEEeeCCCCcch------------h-------ccCCCCEEEECCcccCCCCH--HHHHHHHHHHHhCC-----
Confidence 3457999999999976531 1 12479999999999998754 67888888888531
Q ss_pred eeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCe----------eEeccccc-CC
Q psy11941 98 VFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLV----------NYFGKCTN-LN 166 (313)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~----------~~~~~~~~-~~ 166 (313)
..++++|+||||...... ..+.+...... .....++. .+
T Consensus 110 ---------------------------~~~v~~V~GNHD~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 159 (296)
T 3rl5_A 110 ---------------------------YEYKIVIAGNHELTFDKE---FMADLVKQDYYRFPSVSKLKPEDFDNVQSLLT 159 (296)
T ss_dssp ---------------------------CSEEEECCCTTCGGGCHH---HHHHHTTSCGGGSHHHHTCCHHHHTTTGGGCT
T ss_pred ---------------------------CCeEEEEcCCcccccchh---hhhhhhcccccccccccccccchhhhHhhhcC
Confidence 246999999999965211 11111000000 00000100 00
Q ss_pred -ceeeecEEEeeCCeEEEEEecCCCchHHHHHHhhhcc----hhccCCCCCCCcceEEEeeccccCCCCc----------
Q psy11941 167 -EITLNPLIIQKNETKVAIFGLGYVKDERLCNMIKHNK----VKYMKPTDDKDIIYILVLHQNRPERGTV---------- 231 (313)
Q Consensus 167 -~~~~~~~~l~~~~~~~~i~gl~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~Ilv~H~~~~~~~~~---------- 231 (313)
.+.+.--....++ +.|+|.|+..... .|...... .+.... .+....|+++|+++......
T Consensus 160 ~~~~L~~~~~~i~G--l~i~Gsp~tP~~~-~~~f~~~~~~~~~~~~~~--ip~~~dILvTH~PP~g~~D~~~~~~~~~G~ 234 (296)
T 3rl5_A 160 NSIYLQDSEVTVKG--FRIYGAPWTPWFN-GWGFNLPRGQSLLDKWNL--IPEGTDILMTHGPPLGFRDWVPKELQRVGC 234 (296)
T ss_dssp TSEECSSEEEEETT--EEEEEECCBCC---CCTTBCCTTHHHHHHHTT--SCTTCSEEEESSCBTTSSCEEGGGTEECSB
T ss_pred CeEEecCCcEEECC--EEEEEecCCCCCC-CcCCCcchHHHHHHHHhh--CCCCCeEEEECCCccccccccccccCcCCh
Confidence 0111111222233 6688877643211 11111000 000011 12348999999998644210
Q ss_pred Ccccccc-CCCcccEEEeCCccCccccCCCCCCCcccEEecCCCceeccccCccccccEEEEEEe
Q psy11941 232 KNIAEDS-IPSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCN 295 (313)
Q Consensus 232 ~~~~~~~-~~~~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS~~~~~~~e~~~~~~g~~vv~~~ 295 (313)
..+...+ ....++++++||+|.+.... ..+.+.++||||.... +. ..+.-.++++.
T Consensus 235 ~~L~~~i~~~~~p~l~v~GH~H~~~~~~---~~g~t~vvNpGs~~~~-~~----~~n~p~v~dl~ 291 (296)
T 3rl5_A 235 VELLNTVQRRVRPKLHVFGGIHEGYGTM---TDGYTTYINASTCTVS-FQ----PTNPPIIFDLP 291 (296)
T ss_dssp HHHHHHHHHTTCCSEEEECSCGGGCEEE---ECSSCEEEECBCSCTT-SC----CCSCCEEEEEE
T ss_pred HHHHHHHHHhcCCCEEEECCccCCCceE---EECCEEEEECCcCCcC-cC----CCCCCEEEEec
Confidence 1111223 14568999999999976432 2367889999994322 11 22334667665
No 25
>3tgh_A Glideosome-associated protein 50; phosphatase fold, NOT A phosphatase, motor protein, structur protein, membrane protein; 1.70A {Plasmodium falciparum 3D7}
Probab=99.56 E-value=2.6e-14 Score=133.23 Aligned_cols=237 Identities=10% Similarity=0.006 Sum_probs=130.3
Q ss_pred CeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCcee
Q psy11941 20 NTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVF 99 (313)
Q Consensus 20 ~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 99 (313)
..+||+.++|+|.|.. .+....+.+.+.+.+.++|+||++||+|+.+..+ ..-.++.+.+.++.
T Consensus 2 ~~l~f~~igD~g~g~~--------~q~~va~~m~~~~~~~~pd~vl~~GD~~y~G~~~-~~d~~~~~~f~~~~------- 65 (342)
T 3tgh_A 2 CQLRFASLGDWGKDTK--------GQILNAKYFKQFIKNERVTFIVSPGSNFIDGVKG-LNDPAWKNLYEDVY------- 65 (342)
T ss_dssp CCEEEEECCSCBSCCH--------HHHHHHHHHHHHHHHTTCCEEEECSCSBTTCCCS-TTCTHHHHHTTTTS-------
T ss_pred ceEEEEEEecCCCCCc--------hHHHHHHHHHHHHhhcCCCEEEECCCcccCCCCc-CccHHHHHHHHHHh-------
Confidence 3689999999998642 3455667788888889999999999999885321 11122333333221
Q ss_pred eeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHh----hCC---------CeeEecccccCC
Q psy11941 100 IDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVS----NSG---------LVNYFGKCTNLN 166 (313)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~----~~~---------~~~~~~~~~~~~ 166 (313)
..++...++|+++|+||||....... .++.-. ... ......+|.-..
T Consensus 66 ------------------~~~~~~~~~P~~~vlGNHD~~~~~~a--q~~~~~~~~~~~~~~~~~~~~~~~~~~~rw~~P~ 125 (342)
T 3tgh_A 66 ------------------SEEKGDMYMPFFTVLGTRDWTGNYNA--QLLKGQGIYIEKNGETSIEKDADATNYPKWIMPN 125 (342)
T ss_dssp ------------------CCGGGTTCSEEEECCCHHHHTSCHHH--HHHHHHC---------------CCCSSCEEECSS
T ss_pred ------------------hhhhhhhCCCEEEeCCCCccCCCchH--hhhhhhcccccccccccccccccccCCCCccCCc
Confidence 00001357899999999999874211 111111 000 000112232211
Q ss_pred ceee--ecEEE-------eeC--CeEEEEEecCCC---------------chHHHHHHhhhcchhccCCCCCCCcceEEE
Q psy11941 167 EITL--NPLII-------QKN--ETKVAIFGLGYV---------------KDERLCNMIKHNKVKYMKPTDDKDIIYILV 220 (313)
Q Consensus 167 ~~~~--~~~~l-------~~~--~~~~~i~gl~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv 220 (313)
.+.. ..+.+ ..| +..+.++.+.-. ..+++.|+.+.+ + .....|++
T Consensus 126 ~yY~~~~~f~~~~~~~~~~~g~~~~~v~fi~LDT~~l~~~~~~~~~~~~~~~~Ql~WLe~~L-----~----~~~~~IV~ 196 (342)
T 3tgh_A 126 YWYHYFTHFTVSSGPSIVKTGHKDLAAAFIFIDTWVLSSNFPYKKIHEKAWNDLKSQLSVAK-----K----IADFIIVV 196 (342)
T ss_dssp SSEEEEEEEEEC---------CEEEEEEEEECCTTTTSTTCSCHHHHHHHHHHHHHHHHHHH-----H----HCSEEEEE
T ss_pred ceEEEEEEeeccccccccccCCCCceEEEEEEeCcccccCCcccccchHHHHHHHHHHHHhh-----c----cCCcEEEE
Confidence 1110 00011 112 134666665431 124566665443 1 13489999
Q ss_pred eeccccCCCCc-C------ccccccCCCcccEEEeCCccCccccCCCCCCCcccEEecCCCceecc---ccC-----ccc
Q psy11941 221 LHQNRPERGTV-K------NIAEDSIPSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSL---CAG-----EAV 285 (313)
Q Consensus 221 ~H~~~~~~~~~-~------~~~~~~~~~~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS~~~~~~---~e~-----~~~ 285 (313)
+|+|+...+.. + .+...+.+.++|++++||.|..+.... ++...+.+|+...... ... ...
T Consensus 197 ~HhP~~~~~~~~~~~~l~~~l~~ll~~~~VdlvlsGH~H~~~~~~~----~g~~~iv~Ga~g~~~~~~~~~~~~s~f~~~ 272 (342)
T 3tgh_A 197 GDQPIYSSGYSRGSSYLAYYLLPLLKDAEVDLYISGHDNNMEVIED----NDMAHITCGSGSMSQGKSGMKNSKSLFFSS 272 (342)
T ss_dssp CSSCSSCSSTTCCCHHHHHHTHHHHHHTTCCEEEECSSSSEEEEEE----TTEEEEEECCSSCCCCCCSSCCTTEEEEEC
T ss_pred ECCCCCCCCCCCCcHHHHHHHHHHHHHcCCCEEEECCCcceeEEee----CCcEEEEeCccccccccCCCCCCcceeecC
Confidence 99998654421 0 111112236799999999999887532 2244444565322110 000 014
Q ss_pred cccEEEEEEeCCceeEEEEe
Q psy11941 286 QKKCGILMCNKQNYKLVPRS 305 (313)
Q Consensus 286 ~~g~~vv~~~~~~~~~~~i~ 305 (313)
+.||.+++++++.+.++++.
T Consensus 273 ~~Gf~~l~v~~~~l~~~~~~ 292 (342)
T 3tgh_A 273 DIGFCVHELSNNGIVTKFVS 292 (342)
T ss_dssp SSEEEEEEEETTEEEEEEEE
T ss_pred CCcEEEEEEECCEEEEEEEE
Confidence 67999999999999999887
No 26
>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein structure initi midwest center for structural genomics, PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP: d.159.1.8
Probab=99.43 E-value=1.1e-13 Score=118.69 Aligned_cols=81 Identities=17% Similarity=0.054 Sum_probs=54.1
Q ss_pred EEEEEeeccccCcccCCc-CccchhHHHHHHHHHHHHh--cCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCce
Q psy11941 22 IRIMIASDIHLGYLETDR-ERGNDSFVSFEEILEQALD--QEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSV 98 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~-~~~~~~~~~l~~ii~~~~~--~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~ 98 (313)
|||+++||+|++...... ..-.+....++.+++.+++ .++|.|+++||+++.+ + ....+.+.|+++
T Consensus 2 ~~i~~iSD~H~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vi~~GDl~~~~-~---~~~~~~~~l~~l------- 70 (195)
T 1xm7_A 2 AMMYFISDTHFYHENIINLNPEVRFKGFEIVILTNLLKVLKPEDTLYHLGDFTWHF-N---DKNEYLRIWKAL------- 70 (195)
T ss_dssp CCEEEEBCCCBTCTTHHHHSTTTCCTTHHHHHHHHHHTTCCTTCEEEECSCCBSCS-C---CTTSHHHHHHHS-------
T ss_pred cEEEEEeccccCCCccccccCCCCHHHHHHHHHHHHHHhCCCCCEEEECCCCCCCc-h---hHHHHHHHHHHC-------
Confidence 789999999998642100 0001112345667777766 4899999999999875 2 123455566643
Q ss_pred eeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCC
Q psy11941 99 FIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~ 139 (313)
+.|+++|+||||...
T Consensus 71 --------------------------~~~~~~v~GNhD~~~ 85 (195)
T 1xm7_A 71 --------------------------PGRKILVMGNHDKDK 85 (195)
T ss_dssp --------------------------SSEEEEECCTTCCCH
T ss_pred --------------------------CCCEEEEeCCCCCch
Confidence 248999999999853
No 27
>1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A {Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1
Probab=99.28 E-value=2.3e-11 Score=116.36 Aligned_cols=184 Identities=13% Similarity=0.015 Sum_probs=100.2
Q ss_pred CCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhc--CCCEEEEcCCcCCCCCC---CHHHHHHHHHHHHHhcc
Q psy11941 19 RNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQ--EVDMVLLGGDLFHINKP---SPTTLKKCLETLRKYCI 93 (313)
Q Consensus 19 ~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~--~~d~vv~~GDlf~~~~~---~~~~~~~~~~~l~~l~~ 93 (313)
...+||+++||+|.+.. .. .+++.+.+. ++|+||++||++..... .......+.+.++.+.
T Consensus 124 ~~~~~f~~~gD~~~~~~---------~~----~~l~~i~~~~~~~D~vl~~GD~~y~~~~~~~~~~~~~~~~~~l~~l~- 189 (426)
T 1xzw_A 124 DVPYVFGLIGDIGQTHD---------SN----TTLTHYEQNSAKGQAVLFMGDLSYSNRWPNHDNNRWDTWGRFSERSV- 189 (426)
T ss_dssp TCCEEEEEECSCTTBHH---------HH----HHHHHHHHCTTCCSEEEECSCCCCGGGSGGGCTHHHHHHHHHHHHHH-
T ss_pred CCCeEEEEEEeCCCCCc---------hH----HHHHHHHhCCCCCCEEEeCCChhhcccCCcccchHHHHHHHHHHHHH-
Confidence 56899999999997631 12 234444444 89999999999975322 1233444555555442
Q ss_pred CCCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCC--cC-chHHHHhhCCCeeEecccccCCceee
Q psy11941 94 GDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPE--LV-AALDIVSNSGLVNYFGKCTNLNEITL 170 (313)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~--~~-~~~~~l~~~~~~~~~~~~~~~~~~~~ 170 (313)
..+|+++++||||...... .. ....+.+...+- ..+ ......
T Consensus 190 ------------------------------~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~p-~~~-~~~~~~--- 234 (426)
T 1xzw_A 190 ------------------------------AYQPWIWTAGNHEIDYAPDIGEYQPFVPFTNRYPTP-HEA-SGSGDP--- 234 (426)
T ss_dssp ------------------------------TTSCEECCCCGGGCCCBGGGTBCSTTHHHHHHSCCC-CGG-GTCSST---
T ss_pred ------------------------------hcCCEEEeccccccccCCccccccCChhheEEEeCC-ccc-CCCCCC---
Confidence 3689999999999976310 00 111111111100 000 000000
Q ss_pred ecEEEeeCCeEEEEEecCCC-----chHHHHHHhhhcchhccCCCCCCCcceEEEeeccccCCCCcCc---------ccc
Q psy11941 171 NPLIIQKNETKVAIFGLGYV-----KDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTVKN---------IAE 236 (313)
Q Consensus 171 ~~~~l~~~~~~~~i~gl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~~~~---------~~~ 236 (313)
....+..++ +.++++.-. ..+++.|+.+.++. .. ......+|+++|+|+...+.... +..
T Consensus 235 ~~ys~~~g~--~~~i~Ldt~~~~~~~~~Q~~WL~~~L~~--~~--~~~~~w~Iv~~H~P~~~~~~~~~~~~~~~r~~l~~ 308 (426)
T 1xzw_A 235 LWYAIKRAS--AHIIVLSSYSGFVKYSPQYKWFTSELEK--VN--RSETPWLIVLVHAPLYNSYEAHYMEGEAMRAIFEP 308 (426)
T ss_dssp TSEEEEETT--EEEEECCTTSCCSTTSHHHHHHHHHHHH--CC--TTTCCEEEEECSSCSSCCBSTTTTTTHHHHHHHHH
T ss_pred CeEEEEECC--EEEEEeeCcccCCCCHHHHHHHHHHHHh--hh--hcCCCEEEEEeccCceeCCCcccCCCHHHHHHHHH
Confidence 013344443 556665422 35677887665432 11 12234789999998754321110 111
Q ss_pred ccCCCcccEEEeCCccCcccc
Q psy11941 237 DSIPSFFHFILWGHEHECRIK 257 (313)
Q Consensus 237 ~~~~~~~d~v~~GH~H~~~~~ 257 (313)
.+.+.++|++++||+|..+..
T Consensus 309 ll~~~~VdlvlsGH~H~~~r~ 329 (426)
T 1xzw_A 309 YFVYYKVDIVFSGHVHSYERS 329 (426)
T ss_dssp HHHHTTCSEEEECSSSSEEEE
T ss_pred HHHHhCCCEEEEcChhhheee
Confidence 122357899999999998764
No 28
>2qfp_A Purple acid phosphatase; binuclear, Fe-Zn, hydrolase; HET: NAG NDG; 2.20A {Phaseolus vulgaris} SCOP: b.1.12.1 d.159.1.1 PDB: 2qfr_A* 1kbp_A* 3kbp_A* 4kbp_A*
Probab=99.23 E-value=6.1e-11 Score=113.32 Aligned_cols=184 Identities=13% Similarity=0.049 Sum_probs=98.8
Q ss_pred CCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhc--CCCEEEEcCCcCCCCCCC---HHHHHHHHHHHHHhcc
Q psy11941 19 RNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQ--EVDMVLLGGDLFHINKPS---PTTLKKCLETLRKYCI 93 (313)
Q Consensus 19 ~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~--~~d~vv~~GDlf~~~~~~---~~~~~~~~~~l~~l~~ 93 (313)
...+||+++||+|.+.. .. ++++.+.+. ++|+||++||+++..... ......+.+.++.+.
T Consensus 117 ~~~~~f~~igD~~~~~~---------~~----~~l~~~~~~~~~~D~vl~~GDl~y~~~~~~~~~~~~~~~~~~l~~~~- 182 (424)
T 2qfp_A 117 DVPYTFGLIGDLGQSFD---------SN----TTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSV- 182 (424)
T ss_dssp TCCEEEEEECSCTTBHH---------HH----HHHHHHHTCSSCCCEEEECSCCSCGGGSGGGCTHHHHHHHHHHHHHH-
T ss_pred CCCeEEEEEEeCCCCCC---------hH----HHHHHHHhCCCCCCEEEEcCccccccccccccchHHHHHHHHHHHHH-
Confidence 46899999999998642 11 234444454 899999999999864311 123344445555432
Q ss_pred CCCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCC--Cc-CchHHHHhhCCCeeEecccccCCceee
Q psy11941 94 GDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGP--EL-VAALDIVSNSGLVNYFGKCTNLNEITL 170 (313)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~--~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~ 170 (313)
..+|+++++||||..... .. .....+.....+- ..+ .......
T Consensus 183 ------------------------------~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~P-~~~-~~~~~~~-- 228 (424)
T 2qfp_A 183 ------------------------------AYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVP-YEA-SQSTSPF-- 228 (424)
T ss_dssp ------------------------------TTSCEEECCCHHHHCCBGGGTBCSTTHHHHHHCCCC-GGG-GTCSSTT--
T ss_pred ------------------------------hcCCeEeecCCcccccCCcccccccchhhhhhccCC-ccc-cCCCCCc--
Confidence 357999999999987421 00 0111122211100 000 0000000
Q ss_pred ecEEEeeCCeEEEEEecCCC-----chHHHHHHhhhcchhccCCCCCCCcceEEEeeccccCCCCcCcc---------cc
Q psy11941 171 NPLIIQKNETKVAIFGLGYV-----KDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTVKNI---------AE 236 (313)
Q Consensus 171 ~~~~l~~~~~~~~i~gl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~~~~~---------~~ 236 (313)
...+..| .+.++++.-. ..+++.|+.+.++. . + .......|++.|+|+...+...+. ..
T Consensus 229 -~ys~~~g--~~~~i~Ldt~~~~~~~~~Q~~WL~~~L~~--~-~-~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~r~~l~~ 301 (424)
T 2qfp_A 229 -WYSIKRA--SAHIIVLSSYSAYGRGTPQYTWLKKELRK--V-K-RSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEA 301 (424)
T ss_dssp -SEEEEET--TEEEEECCTTSCCSTTSHHHHHHHHHHHH--C-C-TTTCCEEEEECSSCSSCCBSTTTTTTHHHHHHHHH
T ss_pred -EEEEEEC--CEEEEEecCCccCCCcHHHHHHHHHHHhh--h-c-ccCCCEEEEEeCcCceecCcccccccHHHHHHHHH
Confidence 1234444 3556665421 13677777665432 1 1 112347899999987643221111 01
Q ss_pred ccCCCcccEEEeCCccCcccc
Q psy11941 237 DSIPSFFHFILWGHEHECRIK 257 (313)
Q Consensus 237 ~~~~~~~d~v~~GH~H~~~~~ 257 (313)
.+.+.++|++++||.|..+..
T Consensus 302 ll~~~~VdlvlsGH~H~y~r~ 322 (424)
T 2qfp_A 302 WFVKYKVDVVFAGHVHAYERS 322 (424)
T ss_dssp HHHHTTCSEEEECSSSSEEEE
T ss_pred HHHHhCCcEEEECChhhhhee
Confidence 122357999999999996543
No 29
>1hp1_A 5'-nucleotidase; metallophosphatase, dinuclear, metalloenzyme, hydrolase, domain movement; HET: ATP; 1.70A {Escherichia coli} SCOP: d.114.1.1 d.159.1.2 PDB: 1ush_A 2ush_A 1hpu_A* 1ho5_A* 1oi8_A 1oid_A 1oie_A
Probab=99.18 E-value=1.6e-10 Score=113.23 Aligned_cols=191 Identities=14% Similarity=0.207 Sum_probs=101.6
Q ss_pred CCCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhc----CC-CEEEEcCCcCCCCCCCHHH---HHHHHHHHH
Q psy11941 18 DRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQ----EV-DMVLLGGDLFHINKPSPTT---LKKCLETLR 89 (313)
Q Consensus 18 ~~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~----~~-d~vv~~GDlf~~~~~~~~~---~~~~~~~l~ 89 (313)
....|||+|+||+|.+...... ..-.+..+..+++.++++ ++ ++++.+||+++.... .. -+...+.|+
T Consensus 5 ~~~~l~Il~~~D~H~~~~~~~~--~~~G~~~~~~~v~~~r~~~~~~~~~~lvl~~GD~~~g~~~--~~~~~~~~~~~~ln 80 (516)
T 1hp1_A 5 KTYKITVLHTNDHHGHFWRNEY--GEYGLAAQKTLVDGIRKEVAAEGGSVLLLSGGDINTGVPE--SDLQDAEPDFRGMN 80 (516)
T ss_dssp CCEEEEEEEECCCTTCCSCCTT--SCCCHHHHHHHHHHHHHHHHHHTCEEEEEECSCCSSSCHH--HHTTTTHHHHHHHH
T ss_pred CceEEEEEEecccccCccCCCC--CCcCHHHHHHHHHHHHHhhhccCCCEEEEeCCccCCCcch--hhhcCCcHHHHHHh
Confidence 4458999999999976532211 112344566666666654 46 689999999975421 11 134555666
Q ss_pred HhccCCCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEec-cc---ccC
Q psy11941 90 KYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFG-KC---TNL 165 (313)
Q Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~-~~---~~~ 165 (313)
.+ + +.++++||||+..+... ....+...++- ++. .. ..-
T Consensus 81 ~l---------------------------------g-~d~~~~GNHEfd~g~~~--l~~~~~~~~~~-~l~aNv~~~~~g 123 (516)
T 1hp1_A 81 LV---------------------------------G-YDAMAIGNHEFDNPLTV--LRQQEKWAKFP-LLSANIYQKSTG 123 (516)
T ss_dssp HH---------------------------------T-CCEEECCGGGGSSCHHH--HHHHHHHCSSC-EECSSEEETTTT
T ss_pred cc---------------------------------C-CCEEeeccccccCCHHH--HHHHHhhCCCC-EEEeEEEECCCC
Confidence 43 3 33678899999764221 22334444332 111 10 000
Q ss_pred Cceeeec-EEEeeCCeEEEEEecCCCc------h------------HHHHHHhhhcchhccCCCCCCCcceEEEeecccc
Q psy11941 166 NEITLNP-LIIQKNETKVAIFGLGYVK------D------------ERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRP 226 (313)
Q Consensus 166 ~~~~~~~-~~l~~~~~~~~i~gl~~~~------~------------~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~ 226 (313)
+.+ +.| .+++.++.++.|+|+.... + +.+.+.+.+ ++.+...+ +.|+++|.+..
T Consensus 124 ~~~-~~~~~i~~~~G~kIgiiG~~~~~~~~~~~p~~~~~~~~~d~~~~~~~~v~~-----l~~~~~~d-~iI~l~H~g~~ 196 (516)
T 1hp1_A 124 ERL-FKPWALFKRQDLKIAVIGLTTDDTAKIGNPEYFTDIEFRKPADEAKLVIQE-----LQQTEKPD-IIIAATHMGHY 196 (516)
T ss_dssp EES-SBSEEEEEETTEEEEEEEEECTTTTTSSSCCSCTTEEECCHHHHHHHHHHH-----HHHHTCCS-EEEEEEESCCC
T ss_pred Ccc-cCCeEEEEECCEEEEEEEecccCcccccCcCccCCcEEeCHHHHHHHHHHH-----HHhcCCCC-EEEEEecCCcc
Confidence 011 123 4566788899999973211 1 112222222 11101234 89999999864
Q ss_pred CC---CCc---C-ccccccCCCcccEEEeCCccCccc
Q psy11941 227 ER---GTV---K-NIAEDSIPSFFHFILWGHEHECRI 256 (313)
Q Consensus 227 ~~---~~~---~-~~~~~~~~~~~d~v~~GH~H~~~~ 256 (313)
.. +.. + .+...+...++|+|++||.|....
T Consensus 197 ~~~~~~~~~~~~~~la~~~~~~~iDlilgGHtH~~~~ 233 (516)
T 1hp1_A 197 DNGEHGSNAPGDVEMARALPAGSLAMIVGGHSQDPVC 233 (516)
T ss_dssp GGGCCTTSCCCHHHHHHHSCTTSSSEEECCSSCCBCC
T ss_pred CCCcccccCchHHHHHHhCCCCceeEEECCCCCcccc
Confidence 21 100 0 111112223599999999998764
No 30
>3qfk_A Uncharacterized protein; structural genomics, center for structural genomics of infec diseases, csgid, phosphoesterase, hydrolase; HET: MSE AKG; 2.05A {Staphylococcus aureus subsp}
Probab=99.15 E-value=9.4e-10 Score=108.11 Aligned_cols=207 Identities=20% Similarity=0.225 Sum_probs=113.2
Q ss_pred CCCeEEEEEeeccccCcccCCcC----ccchhHHHHHHHHHHHHhcCCC-EEEEcCCcCCCCCCCHHHH-------HHHH
Q psy11941 18 DRNTIRIMIASDIHLGYLETDRE----RGNDSFVSFEEILEQALDQEVD-MVLLGGDLFHINKPSPTTL-------KKCL 85 (313)
Q Consensus 18 ~~~~mkilh~SD~Hlg~~~~~~~----~~~~~~~~l~~ii~~~~~~~~d-~vv~~GDlf~~~~~~~~~~-------~~~~ 85 (313)
....++|+|+||+|......... ...-.+..+..+++.++++.++ +++.+||+++.... ...+ ....
T Consensus 16 ~~~~l~Il~tnD~Hg~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~~~~l~l~~GD~~~gs~~-~~~~~~~~~~~~~~~ 94 (527)
T 3qfk_A 16 QGSNIAFYVVSDVHGYIFPTDFTSRNQYQPMGLLLANHVIEQDRRQYDQSFKIDNGDFLQGSPF-CNYLIAHSGSSQPLV 94 (527)
T ss_dssp --CEEEEEEECCCTTCCSSCCSSSTTCCCSCSHHHHHHHHHHHHTTSSEEEEEECSCCSSSSHH-HHHHHHTTCSSHHHH
T ss_pred CCCcEEEEEEeccCCCccCcccccCCCcCCCcHHHHHHHHHHHHhcCCCEEEEECCCcCCCcHH-HHHHhhcccCcchHH
Confidence 34689999999999665332111 1233566788999999988887 55669999986522 1111 4566
Q ss_pred HHHHHhccCCCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEecccc-c
Q psy11941 86 ETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCT-N 164 (313)
Q Consensus 86 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~~-~ 164 (313)
+.|+. .+.. ++++||||+..+... ..+.+...++-.+..... .
T Consensus 95 ~~ln~---------------------------------lg~D-~~t~GNHefd~G~~~--l~~~~~~~~~p~l~aNv~~~ 138 (527)
T 3qfk_A 95 DFYNR---------------------------------MAFD-FGTLGNHEFNYGLPY--LKDTLRRLNYPVLCANIYEN 138 (527)
T ss_dssp HHHHH---------------------------------TCCC-EECCCGGGGTTCHHH--HHHHHHHCSSCBCCSSEEET
T ss_pred HHHHh---------------------------------cCCc-EEeccccccccCHHH--HHHHHHhCCCCEEEeEeeeC
Confidence 66664 3445 456799998764321 223444433211100000 0
Q ss_pred CCceeee-cEEEeeCCeEEEEEecCCC------ch------------HHHHHHhhhcchhccCCCCCCCcceEEEeeccc
Q psy11941 165 LNEITLN-PLIIQKNETKVAIFGLGYV------KD------------ERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNR 225 (313)
Q Consensus 165 ~~~~~~~-~~~l~~~~~~~~i~gl~~~------~~------------~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~ 225 (313)
-+..... ..+++.++.++.|+|+... .+ +.+...+.+ ++ ...+ +.|+++|.+.
T Consensus 139 g~p~~~~py~i~e~~G~kIgviG~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~v~~-----l~--~~~D-~iIvl~H~G~ 210 (527)
T 3qfk_A 139 DSTLTDNGVKYFQVGDQTVGVIGLTTQFIPHWEQPEHIQSLTFHSAFEILQQYLPE-----MK--RHAD-IIVVCYHGGF 210 (527)
T ss_dssp TEESSSCSEEEEEETTEEEEEEEEECTTGGGTSCHHHHTTEEECCHHHHHHHHHHH-----HH--HHCS-EEEEEEECCC
T ss_pred CCCccCCCEEEEEECCEEEEEEEeccCCcccccCccccCCcEEcCHHHHHHHHHHH-----HH--hCCC-EEEEEeCcCc
Confidence 0000012 2456778889999997322 11 111111111 22 1234 8999999875
Q ss_pred cCC---CCc-Cc-cc----cccC---CCcccEEEeCCccCccccCCCCCCCcccEEecCC
Q psy11941 226 PER---GTV-KN-IA----EDSI---PSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGS 273 (313)
Q Consensus 226 ~~~---~~~-~~-~~----~~~~---~~~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS 273 (313)
... +.. +. .. ..+. ..++|+|+.||.|..+.. ..+...++++|+
T Consensus 211 ~~d~~~~~~~~~~~~e~~~~~la~~~~~giDlIlgGHtH~~~~~----~v~~~~ivqag~ 266 (527)
T 3qfk_A 211 EKDLESGTPTEVLTGENEGYAMLEAFSKDIDIFITGHQHRQIAE----RFKQTAVIQPGT 266 (527)
T ss_dssp SBCTTTCCBSSCCSSSCCHHHHHHHHGGGCSEEECCSSCCEEEE----EETTEEEEEECS
T ss_pred ccccccCccccccccchHHHHHHHhcCCCCcEEEECCCCcccce----EECCEEEeccCh
Confidence 421 100 00 00 0122 257999999999997752 125567788876
No 31
>3ive_A Nucleotidase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: CTN; 1.70A {Escherichia coli O6} PDB: 3ivd_A*
Probab=99.12 E-value=5.4e-10 Score=109.38 Aligned_cols=206 Identities=17% Similarity=0.261 Sum_probs=110.4
Q ss_pred CCeEEEEEeeccccCcccCCc------CccchhHHHHHHHHHHHHhcCCCEEEE-cCCcCCCCCCCHHHH---HHHHHHH
Q psy11941 19 RNTIRIMIASDIHLGYLETDR------ERGNDSFVSFEEILEQALDQEVDMVLL-GGDLFHINKPSPTTL---KKCLETL 88 (313)
Q Consensus 19 ~~~mkilh~SD~Hlg~~~~~~------~~~~~~~~~l~~ii~~~~~~~~d~vv~-~GDlf~~~~~~~~~~---~~~~~~l 88 (313)
...++|+|+||+|........ ....-.+..+..+++++++++++.+++ +||+++.... ..+ +...+.|
T Consensus 4 ~~~l~Il~tnD~Hg~~~~~~~~~~~~~~~~~gG~a~la~~i~~~r~~~~~~llldaGD~~~g~~~--~~~~~g~~~~~~l 81 (509)
T 3ive_A 4 AKDVTIIYTNDLHAHVEPYKVPWIADGKRDIGGWANITTLVKQEKAKNKATWFFDAGDYFTGPYI--SSLTKGKAIIDIM 81 (509)
T ss_dssp CEEEEEEEECCCTTCCSCBCCTTSGGGTSCBCCHHHHHHHHHHHHHHCSSEEEEECSCCSSSSHH--HHTTTTHHHHHHH
T ss_pred ceEEEEEEEccccCCccCcccccccCCCcCcCCHHHHHHHHHHHHhcCCCeEEEECCCCCCCchh--hhhcCChHHHHHH
Confidence 357999999999955432211 112234677889999999999998888 9999985311 111 2334444
Q ss_pred HHhccCCCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEeccc--c-cC
Q psy11941 89 RKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKC--T-NL 165 (313)
Q Consensus 89 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~--~-~~ 165 (313)
+ ..+.. +++.||||+..+... ..+.+...++-.+.... . .-
T Consensus 82 n---------------------------------~lg~D-~~tlGNHEfd~G~~~--l~~~l~~~~~p~l~aNv~~~~~~ 125 (509)
T 3ive_A 82 N---------------------------------TMPFD-AVTIGNHEFDHGWDN--TLLQLSQAKFPIVQGNIFYQNSS 125 (509)
T ss_dssp T---------------------------------TSCCS-EECCCGGGGTTCHHH--HHHHHTTCSSCBCCCSEEETTSC
T ss_pred H---------------------------------hcCCc-EEeecccccccCHHH--HHHHHhhCCCCEEEEEEEECCCC
Confidence 3 33444 456799998764221 22334433321111100 0 00
Q ss_pred Cceeeec-EEEeeCCeEEEEEecCCC------------------ch-HHHHHHhhhcchhccCCCCCCCcceEEEeeccc
Q psy11941 166 NEITLNP-LIIQKNETKVAIFGLGYV------------------KD-ERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNR 225 (313)
Q Consensus 166 ~~~~~~~-~~l~~~~~~~~i~gl~~~------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~ 225 (313)
+.+...| .+++.++.++.|+|+-.. +. +.+... ++.++. ..+ +.|+++|.+.
T Consensus 126 ~p~~~~py~i~e~~G~kIgiiG~t~~~~~~~~~~~~~~~g~~~~d~~~~~~~~-----v~~Lk~--~~D-~iIvl~H~G~ 197 (509)
T 3ive_A 126 KSFWDKPYTIIEKDGVKIGVIGLHGVFAFNDTVSAATRVGIEARDEIKWLQRY-----IDELKG--KVD-LTVALIHEGV 197 (509)
T ss_dssp CBSSSCSEEEEEETTEEEEEEEEECHHHHHHHSCGGGCTTEEECCHHHHHHHH-----HHHHTT--TCS-EEEEEEECSS
T ss_pred CccCcCCeEEEEECCEEEEEEecccCcccccccccccCCCCEEcCHHHHHHHH-----HHHHHh--cCC-EEEEEeccCc
Confidence 0110122 456778899999997321 00 111111 122333 244 8999999975
Q ss_pred cCCCCc----C----c-cc---cccCCCcccEEEeCCccCccccCCCCCCCcccEEecCC
Q psy11941 226 PERGTV----K----N-IA---EDSIPSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGS 273 (313)
Q Consensus 226 ~~~~~~----~----~-~~---~~~~~~~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS 273 (313)
...... . . .. ...+ .++|+|+.||.|.....+. ..++..++.+|+
T Consensus 198 ~~~~~~~~~~~~~~~~~~d~~la~~~-~giDlIlgGHtH~~~~~~~--~~~~~~ivqag~ 254 (509)
T 3ive_A 198 PARQSSMGGTDVRRALDKDIQTASQV-KGLDILITGHAHVGTPEPI--KVGNTLILSTDS 254 (509)
T ss_dssp CCCCCCC---CCCCCCHHHHHHHHHC-SSCCEEEEESSCCCCSSCE--EETTEEEECCCS
T ss_pred CCccccccccccccccchHHHHHhcC-CCCcEEEeCCcCccCCCCe--eeCCEEEEecCh
Confidence 321100 0 0 00 1112 4699999999998654321 124455666665
No 32
>2z1a_A 5'-nucleotidase; metal-binding, nucleotide-binding, hydrolase, structural genomics, NPPSFA; HET: THM; 1.75A {Thermus thermophilus} SCOP: d.114.1.1 d.159.1.2
Probab=99.04 E-value=1.1e-09 Score=108.31 Aligned_cols=189 Identities=14% Similarity=0.166 Sum_probs=104.9
Q ss_pred CCCeEEEEEeeccccCcccC--C-cCcc--chhHHHHHHHHHHHHhcCCC-EEEEcCCcCCCCCCCH-HHHHHHHHHHHH
Q psy11941 18 DRNTIRIMIASDIHLGYLET--D-RERG--NDSFVSFEEILEQALDQEVD-MVLLGGDLFHINKPSP-TTLKKCLETLRK 90 (313)
Q Consensus 18 ~~~~mkilh~SD~Hlg~~~~--~-~~~~--~~~~~~l~~ii~~~~~~~~d-~vv~~GDlf~~~~~~~-~~~~~~~~~l~~ 90 (313)
....+||+|+||+|...... . .... ...+..+..+++.++++.++ +++.+||+++...... ..-....+.|+.
T Consensus 26 ~~~~l~Il~~~D~H~~~~~~~~~~~~~~~~~gg~~~~~~~v~~~r~~~~~~l~l~~GD~~~gs~~~~~~~~~~~~~~ln~ 105 (552)
T 2z1a_A 26 GGFTLTLVHTNDTHAHLEPVELTLSGEKTPVGGVARRVALFDRVWARAKNPLFLDAGDVFQGTLYFNQYRGLADRYFMHR 105 (552)
T ss_dssp --CEEEEEEECCCTTCCSCEEEECSSSEEEECCHHHHHHHHHHHHHHSSSEEEEECSCCSSSSHHHHHHTTHHHHHHHHH
T ss_pred CCeeEEEEEEcccccCcccccccCcccccccCCHHHHHHHHHHHHhhCCCEEEEeCCCCCCCcHHHHHhCCcHHHHHHHh
Confidence 44589999999999654322 0 0000 13456788899999988898 7788999998653210 011344555653
Q ss_pred hccCCCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEec-ccc-----c
Q psy11941 91 YCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFG-KCT-----N 164 (313)
Q Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~-~~~-----~ 164 (313)
+ +.. +++.||||+..+.. ...+.++..++- ++. ... .
T Consensus 106 l---------------------------------g~d-~~~lGNHEfd~g~~--~l~~~l~~~~~~-~L~aNv~~~~~~~ 148 (552)
T 2z1a_A 106 L---------------------------------RYR-AMALGNHEFDLGPG--PLADFLKGARFK-VVSANVDASREPR 148 (552)
T ss_dssp T---------------------------------TCC-EEECCGGGGTTCHH--HHHHHHTTCCSE-EECTTEECTTCGG
T ss_pred c---------------------------------CCC-ccccccccccCCHH--HHHHHHhhCCCC-EEEEEEecCCCcc
Confidence 2 333 67789999976421 123445444442 222 110 0
Q ss_pred CCceeeec-EEEeeCCeEEEEEecCCCch----------------HHHHHHhhhcchhccCCCCCCCcceEEEeeccccC
Q psy11941 165 LNEITLNP-LIIQKNETKVAIFGLGYVKD----------------ERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPE 227 (313)
Q Consensus 165 ~~~~~~~~-~~l~~~~~~~~i~gl~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~ 227 (313)
...+ +.| .+++.++.++.|+|+-.... +.+.+.+.+ ++. ...+ +.|+++|.+...
T Consensus 149 ~~~~-~~~~~i~~~~G~kIgiiG~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~-----l~~-~~~d-~iIvL~H~g~~~ 220 (552)
T 2z1a_A 149 LKGL-FAPYAVVVVGGERVGIIGLTTPDTREISNPGPTVAFLDPYESAQKAVYE-----LLA-KGVN-KIVVLSHLGYGE 220 (552)
T ss_dssp GTTS-CBSEEEEEETTEEEEEEEEECTTHHHHSCCCTTCEECCHHHHHHHHHHH-----HHH-TTCC-CEEEEEESCHHH
T ss_pred cccc-cCCeEEEEECCEEEEEEEecccchhhccCCCCCcEECCHHHHHHHHHHH-----HHh-cCCC-EEEEEeCCCcch
Confidence 0001 123 45667888999999743211 111222211 111 1234 889999997431
Q ss_pred CCCcCccccccCCCcccEEEeCCccCccc
Q psy11941 228 RGTVKNIAEDSIPSFFHFILWGHEHECRI 256 (313)
Q Consensus 228 ~~~~~~~~~~~~~~~~d~v~~GH~H~~~~ 256 (313)
. ..+... + .++|+|++||.|..+.
T Consensus 221 d---~~la~~-~-~gvDlIlgGHtH~~~~ 244 (552)
T 2z1a_A 221 D---LKLARR-L-VGVQVIVGGHSHTLLG 244 (552)
T ss_dssp H---HHHHTT-C-SSCCEEEECSSCCCBS
T ss_pred H---HHHHHh-C-CCccEEEeCCcCcccc
Confidence 0 011111 1 5799999999999875
No 33
>2wdc_A SOXB, sulfur oxidation protein SOXB; sulfur-sulfur hydrolysis, sulfur oxidation pathway, Cys S-thiosulfonate, hydrolase; 1.50A {Thermus thermophilus} PDB: 2wdd_A* 2wde_A 2wdf_A
Probab=99.03 E-value=2.1e-09 Score=106.31 Aligned_cols=175 Identities=14% Similarity=0.200 Sum_probs=95.9
Q ss_pred hHHHHHHHHHHHHhc--C--CC-EEEEcCCcCCCCCCCHHHH---HHHHHHHHHhccCCCceeeeeccCcccccccCCCc
Q psy11941 45 SFVSFEEILEQALDQ--E--VD-MVLLGGDLFHINKPSPTTL---KKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVN 116 (313)
Q Consensus 45 ~~~~l~~ii~~~~~~--~--~d-~vv~~GDlf~~~~~~~~~~---~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (313)
.+..+..+++.++++ + +| +++.+||+++.... ..+ +...++|+.+
T Consensus 103 G~arla~~v~~~r~~~~~~gpd~Lll~~GD~~~gs~~--~~~~~g~~~~~~ln~l------------------------- 155 (562)
T 2wdc_A 103 GMGALTALIRDQKARVEAEGGKALVLDGGDTWTNSGL--SLLTRGEAVVRWQNLV------------------------- 155 (562)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEECSCCSSSSHH--HHHHTTHHHHHHHHHH-------------------------
T ss_pred CHHHHHHHHHHHHhhhhcCCCCEEEEeCCCCCCcchh--hhhhCCHHHHHHHHhh-------------------------
Confidence 445677888888876 4 88 77889999986532 222 3556666643
Q ss_pred cCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEec-cc--ccCCceeeec-EEEeeCCeEEEEEecCCCch
Q psy11941 117 YMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFG-KC--TNLNEITLNP-LIIQKNETKVAIFGLGYVKD 192 (313)
Q Consensus 117 ~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~-~~--~~~~~~~~~~-~~l~~~~~~~~i~gl~~~~~ 192 (313)
+.+++ + ||||+..+.. .....++..++- ++. .. .....-.+.| .+++.++.++.|+|+.....
T Consensus 156 --------g~d~~-~-GNHEfd~G~~--~l~~~l~~~~~p-~L~aNv~~~~~~~~~~~py~i~e~~G~kIgiiG~~~~~~ 222 (562)
T 2wdc_A 156 --------GVDHM-V-SHWEWTLGRE--RVEELLGLFRGE-FLSYNIVDDLFGDPLFPAYRIHRVGPYALAVVGASYPYV 222 (562)
T ss_dssp --------TCCEE-C-CSGGGGGCHH--HHHHHHHHCCSE-ECCSSCEETTTCCBSSCSEEEEEETTEEEEEEEECCTTH
T ss_pred --------CCcEE-e-cchhcccCHH--HHHHHHHhCCCC-EEEEEEEecCCCCcccCCeEEEEECCeEEEEEeeccCcc
Confidence 45664 6 9999865321 123444444432 222 10 0000001223 35567888999999643211
Q ss_pred ------------------HHHHHHhhhcchhccCCCCCCCcceEEEeeccccCCCCcCccccccCCCcccEEEeCCccCc
Q psy11941 193 ------------------ERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHEHEC 254 (313)
Q Consensus 193 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~~~~~~~~~~~~~~d~v~~GH~H~~ 254 (313)
+.+...+.+ ++. ...+ +.|+++|.+.... ..+... + .++|+|++||.|..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~v~~-----l~~-~~~d-~iIvLsH~g~~~d---~~la~~-~-~giDlIlgGHtH~~ 290 (562)
T 2wdc_A 223 KVSHPESFTEGLSFALDERRLQEAVDK-----ARA-EGAN-AVVLLSHNGMQLD---AALAER-I-RGIDLILSGHTHDL 290 (562)
T ss_dssp HHHSCGGGGTTEECCCCHHHHHHHHHH-----HHH-TTCS-EEEEEECSCHHHH---HHHHTT-S-SSCCEEEECSSCCC
T ss_pred cccccccccCCcEEeCHHHHHHHHHHH-----HHH-CCCC-EEEEEeCCCCcch---HHHHhc-C-CCCcEEEeCCCCCC
Confidence 112222211 111 1234 8899999974310 011111 1 57999999999998
Q ss_pred cccCCCCCCCcccEEecCC
Q psy11941 255 RIKPEYNTKQRFHVCQPGS 273 (313)
Q Consensus 255 ~~~~~~~~~~~~~i~~~GS 273 (313)
...+.. .++..++.+|+
T Consensus 291 ~~~~~~--~~~t~vvqag~ 307 (562)
T 2wdc_A 291 TPRPWR--VGKTWIVAGSA 307 (562)
T ss_dssp CSSCEE--ETTEEEEECCS
T ss_pred CccCEE--ECCEEEEecCc
Confidence 754321 14456666665
No 34
>4h2g_A 5'-nucleotidase; dimer, hydrolase, phosphatase, extracellular; HET: ADN; 1.55A {Homo sapiens} PDB: 4h2f_A* 4h1y_P* 4h2i_A* 4h1s_A* 4h2b_A*
Probab=99.01 E-value=1.6e-09 Score=106.99 Aligned_cols=189 Identities=15% Similarity=0.152 Sum_probs=103.2
Q ss_pred CCCeEEEEEeeccccCcccCCcC--------ccchhHHHHHHHHHHHHhcCCC-EEEEcCCcCCCCCCCH-HHHHHHHHH
Q psy11941 18 DRNTIRIMIASDIHLGYLETDRE--------RGNDSFVSFEEILEQALDQEVD-MVLLGGDLFHINKPSP-TTLKKCLET 87 (313)
Q Consensus 18 ~~~~mkilh~SD~Hlg~~~~~~~--------~~~~~~~~l~~ii~~~~~~~~d-~vv~~GDlf~~~~~~~-~~~~~~~~~ 87 (313)
....++|+|+||+|......... .....+..+..+++.++++.++ ++|.+||+++...... ..-+...+.
T Consensus 22 ~~~~l~Il~~nD~Hg~~~~~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~~~~g~~~~~~ 101 (546)
T 4h2g_A 22 DPWELTILHTNDVHSRLEQTSEDSSKCVDASRCMGGVARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAHF 101 (546)
T ss_dssp -CEEEEEEEECCCTTCCSCBCTTSSBCSSGGGCBCCHHHHHHHHHHHHHHCSSEEEEECSCCSSSSHHHHHHTTHHHHHH
T ss_pred CceEEEEEEecccccCCcccccccccccccccccCCHHHHHHHHHHHHhhCCCEEEEECCccCCCchhhhhhCChHHHHH
Confidence 44589999999999655432111 0123467788999999988874 7888999998753210 011445566
Q ss_pred HHHhccCCCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchH-HHHhhCCCeeEecccccCC
Q psy11941 88 LRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAAL-DIVSNSGLVNYFGKCTNLN 166 (313)
Q Consensus 88 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~ 166 (313)
|+.+ +.. +++.||||+..+... .. ..+...++- ++.......
T Consensus 102 ln~l---------------------------------g~d-~~~~GNHEfd~g~~~--l~~~~~~~~~~~-~l~aNv~~~ 144 (546)
T 4h2g_A 102 MNAL---------------------------------RYD-AMALGNHEFDNGVEG--LIEPLLKEAKFP-ILSANIKAK 144 (546)
T ss_dssp HHHH---------------------------------TCS-EEECCGGGGTTHHHH--HHTTTTTTCSSC-EECSSEEEC
T ss_pred HHhc---------------------------------CCc-EEeccCcccccCHHH--HHHHHHhhcCCC-EEEEEeecC
Confidence 6643 344 466799998653211 11 222233321 111100000
Q ss_pred c--------eeeecEEEeeCCeEEEEEecCCCchH----------------HHHHHhhhcchhccCCCCCCCcceEEEee
Q psy11941 167 E--------ITLNPLIIQKNETKVAIFGLGYVKDE----------------RLCNMIKHNKVKYMKPTDDKDIIYILVLH 222 (313)
Q Consensus 167 ~--------~~~~~~~l~~~~~~~~i~gl~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H 222 (313)
. ......+++.++.++.|+|+-..... .+...+.+ ++. ...+ +.|+++|
T Consensus 145 ~~~~p~~~~~~~~~~i~~~~G~kIgiiG~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~-----l~~-~g~D-~iI~l~H 217 (546)
T 4h2g_A 145 GPLASQISGLYLPYKVLPVGDEVVGIVGYTSKETPFLSNPGTNLVFEDEITALQPEVDK-----LKT-LNVN-KIIALGH 217 (546)
T ss_dssp HHHHHHHBTTBBSEEEEEETTEEEEEEEEECTTHHHHSCCCSSEEECCHHHHHHHHHHH-----HHH-TTCC-CEEEEEE
T ss_pred CCCCccccccCCCeEEEEECCEEEEEEEecccccccccCCCCCcEEccHHHHHHHHHHH-----HHh-cCCC-EEEEEec
Confidence 0 01123456778899999997432111 11111111 121 1234 8999999
Q ss_pred ccccCCCCcCccccccCCCcccEEEeCCccCcc
Q psy11941 223 QNRPERGTVKNIAEDSIPSFFHFILWGHEHECR 255 (313)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~d~v~~GH~H~~~ 255 (313)
.+.... ..+... + .++|+|+.||.|...
T Consensus 218 ~g~~~d---~~la~~-~-~giDlIlgGHtH~~~ 245 (546)
T 4h2g_A 218 SGFEMD---KLIAQK-V-RGVDVVVGGHSNTFL 245 (546)
T ss_dssp SCHHHH---HHHHHH-S-TTCCEEECCSSCCCC
T ss_pred cCccch---HHHHHh-C-CCCcEEEeCCcCccc
Confidence 964310 111111 2 579999999999865
No 35
>3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase bifunctional periplasmic...; APC63187.2; HET: EPE TAM; 2.43A {Klebsiella pneumoniae subsp}
Probab=98.98 E-value=3.9e-08 Score=91.27 Aligned_cols=56 Identities=21% Similarity=0.318 Sum_probs=39.7
Q ss_pred CCeEEEEEeeccccCcccCC----cCccchhHHHHHHHHHHHHhcCCCE-EEEcCCcCCCC
Q psy11941 19 RNTIRIMIASDIHLGYLETD----RERGNDSFVSFEEILEQALDQEVDM-VLLGGDLFHIN 74 (313)
Q Consensus 19 ~~~mkilh~SD~Hlg~~~~~----~~~~~~~~~~l~~ii~~~~~~~~d~-vv~~GDlf~~~ 74 (313)
.-.++|+|+||+|......+ .....-.+..+..++++++++.++. +|.+||+|+..
T Consensus 6 ~~~l~Il~tnD~Hg~~~~~~~~~~~~~~~gG~ar~at~i~~~r~~~~n~llld~GD~~qGs 66 (339)
T 3jyf_A 6 TVDLRIMETTDLHSNMMDFDYYKDAATEKFGLVRTASLIEQARAEVKNSVLVDNGDVIQGS 66 (339)
T ss_dssp EEEEEEEEECCCTTCCSSEETTTTEECSSCCHHHHHHHHHHHHHTCSCEEEEECSCCSSSS
T ss_pred ceeEEEEEEeeCCCCcccccccCCCccccCCHHHHHHHHHHHHhhCCCEEEEECCCCCCCc
Confidence 34799999999997654321 1112235677888999999888874 45699999754
No 36
>3gve_A YFKN protein; alpha-beta-BETA-alpha sandwich, structural genomics, PSI-2, structure initiative; HET: CIT; 1.25A {Bacillus subtilis subsp}
Probab=98.92 E-value=2.6e-08 Score=92.52 Aligned_cols=56 Identities=21% Similarity=0.410 Sum_probs=39.5
Q ss_pred CCeEEEEEeeccccCcccCC----cCccchhHHHHHHHHHHHHhcCCCEEE-EcCCcCCCC
Q psy11941 19 RNTIRIMIASDIHLGYLETD----RERGNDSFVSFEEILEQALDQEVDMVL-LGGDLFHIN 74 (313)
Q Consensus 19 ~~~mkilh~SD~Hlg~~~~~----~~~~~~~~~~l~~ii~~~~~~~~d~vv-~~GDlf~~~ 74 (313)
...++|+|+||+|....... .....-.+..+..+++.++++.++.++ .+||+|+..
T Consensus 9 ~~~l~Il~tnD~Hg~~~~~~~~~~~~~~~gG~ar~at~i~~~r~~~~~~llld~GD~~qGs 69 (341)
T 3gve_A 9 QVHLSILATTDIHANMMDYDYYSDKETADFGLARTAQLIQKHREQNPNTLLVDNGDLIQGN 69 (341)
T ss_dssp EEEEEEEEECCCTTCCSSEETTTTEECSSCCHHHHHHHHHHHHHHCSSEEEEECSCCSCSS
T ss_pred ceEEEEEEEeccCCCccCccccCCCccccCCHHHHHHHHHHHHhcCCCEEEEecCccCCCc
Confidence 34799999999997654321 111123567788899999988887554 599999764
No 37
>3ztv_A NAD nucleotidase, NADN; hydrolase, NAD pyrophosphatase, NMN nucleotidase, periplasmi enzyme, CD73; HET: ADN; 1.30A {Haemophilus influenzae} PDB: 3zu0_A*
Probab=98.90 E-value=2.2e-08 Score=99.44 Aligned_cols=188 Identities=18% Similarity=0.142 Sum_probs=102.8
Q ss_pred CCCeEEEEEeeccccCcccCCc---------CccchhHHHHHHHHHHHHhcCCC-EEEEcCCcCCCCCCCHHH---HHHH
Q psy11941 18 DRNTIRIMIASDIHLGYLETDR---------ERGNDSFVSFEEILEQALDQEVD-MVLLGGDLFHINKPSPTT---LKKC 84 (313)
Q Consensus 18 ~~~~mkilh~SD~Hlg~~~~~~---------~~~~~~~~~l~~ii~~~~~~~~d-~vv~~GDlf~~~~~~~~~---~~~~ 84 (313)
..-.++|+|+||+|........ ....-.+..+..+++.++++.++ ++|.+||+|+.... .. -+..
T Consensus 9 ~~~~l~Il~tnD~Hg~~~~~~~~~~~~~~~~~~~~gG~arla~~i~~~r~~~~~~l~l~~GD~~~gs~~--~~~~~g~~~ 86 (579)
T 3ztv_A 9 KAVELSILHINDHHSYLEPHETRINLNGQQTKVDIGGFSAVNAKLNKLRKKYKNPLVLHAGDAITGTLY--FTLFGGSAD 86 (579)
T ss_dssp CCEEEEEEEECCCTTCCSCEEEEEEETTEEEEEEECCHHHHHHHHHHHHHHSSSEEEEECSCCSCSSHH--HHTTTTHHH
T ss_pred CceEEEEEEeCccccCccCCccccccCCcccccccCCHHHHHHHHHHHHhhCCCEEEEeCCCCCCCcee--eeecCCHHH
Confidence 3457999999999955432110 00122467788999999988887 67779999987521 11 1234
Q ss_pred HHHHHHhccCCCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEeccc--
Q psy11941 85 LETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKC-- 162 (313)
Q Consensus 85 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~-- 162 (313)
.+.|+.+ +..+ ++.||||+..+... ....+...++-.+....
T Consensus 87 ~~~ln~l---------------------------------g~D~-~tlGNHEfd~G~~~--l~~~~~~~~fp~l~aNv~~ 130 (579)
T 3ztv_A 87 AAVMNAG---------------------------------NFHY-FTLGNHEFDAGNEG--LLKLLEPLKIPVLSANVIP 130 (579)
T ss_dssp HHHHHHH---------------------------------TCSE-EECCSGGGTTHHHH--HHHHHTTCCSCEECSSEEE
T ss_pred HHHHHhc---------------------------------CcCe-eeccccccccCHHH--HHHHHHhcCCCeeeeeEec
Confidence 5566543 3444 56799998653211 22334443322111111
Q ss_pred ---ccCCceeeecEEEeeCCeEEEEEecCC---C-------------ch-HHHHHHhhhcchhccCCCCCCCcceEEEee
Q psy11941 163 ---TNLNEITLNPLIIQKNETKVAIFGLGY---V-------------KD-ERLCNMIKHNKVKYMKPTDDKDIIYILVLH 222 (313)
Q Consensus 163 ---~~~~~~~~~~~~l~~~~~~~~i~gl~~---~-------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H 222 (313)
...........+++.++.++.|+|+-. . +. +.+...+.+ ++. ...+ +.|+++|
T Consensus 131 ~~~~~~~~~~~py~i~~~~G~kIgviG~t~~~~~~~~~~p~~~~~f~d~~~~~~~~v~~-----lk~-~g~d-~iI~l~H 203 (579)
T 3ztv_A 131 DKSSILYNKWKPYDIFTVDGEKIAIIGLDTVNKTVNSSSPGKDVKFYDEIATAQIMANA-----LKQ-QGIN-KIILLSH 203 (579)
T ss_dssp CTTSTTTTSCBSEEEEEETTEEEEEEEEECSHHHHHHSCCCTTEEECCHHHHHHHHHHH-----HHT-TTCC-CEEEEEE
T ss_pred cCCcccccccCCeEEEEECCEEEEEEEEEcCCccccccCCCCCceEcCHHHHHHHHHHH-----HHh-CCCC-EEEEEec
Confidence 011111112345677889999999821 1 00 111111111 222 1234 7899999
Q ss_pred ccccCCCCcCccccccCCCcccEEEeCCccCcc
Q psy11941 223 QNRPERGTVKNIAEDSIPSFFHFILWGHEHECR 255 (313)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~d~v~~GH~H~~~ 255 (313)
.+.... ..+... + .++|+|+.||.|..+
T Consensus 204 ~G~~~d---~~la~~-~-~giDlIlgGHtH~~~ 231 (579)
T 3ztv_A 204 AGSEKN---IEIAQK-V-NDIDVIVTGDSHYLY 231 (579)
T ss_dssp TCHHHH---HHHHHH-C-SSCCEEEECSSCCEE
T ss_pred cCchhh---HHHHHh-C-CCCCEEEeCCCCccc
Confidence 964310 111111 2 479999999999977
No 38
>4h1s_A 5'-nucleotidase; hydrolase; HET: NAG; 2.20A {Homo sapiens}
Probab=98.64 E-value=1.7e-07 Score=92.00 Aligned_cols=185 Identities=16% Similarity=0.214 Sum_probs=99.4
Q ss_pred eEEEEEeeccccCcccCCc--------CccchhHHHHHHHHHHHHhcCCCEEEE-cCCcCCCCCCCHHHH---HHHHHHH
Q psy11941 21 TIRIMIASDIHLGYLETDR--------ERGNDSFVSFEEILEQALDQEVDMVLL-GGDLFHINKPSPTTL---KKCLETL 88 (313)
Q Consensus 21 ~mkilh~SD~Hlg~~~~~~--------~~~~~~~~~l~~ii~~~~~~~~d~vv~-~GDlf~~~~~~~~~~---~~~~~~l 88 (313)
.++|||++|+|-....... ......++.+..+++++++.+++.+++ +||+|+.... ..+ +...++|
T Consensus 3 ~LtILhtnD~Hg~l~~~~~~~~~~~~~~~~~GG~arlat~i~~~r~~~~n~llldaGD~~qGs~~--~~~~~g~~~i~~m 80 (530)
T 4h1s_A 3 ELTILHTNDVHSRLEQTSEDSSKCVNASRCMGGVARLFTKVQQIRRAEPNVLLLDAGDQYQGTIW--FTVYKGAEVAHFM 80 (530)
T ss_dssp EEEEEEECCCTTCCSCBCTTSSBCCSTTSCBCCHHHHHHHHHHHHHHCSSEEEEECSCCSCSSHH--HHHHTTHHHHHHH
T ss_pred EEEEEEEcccccCCcccCcccccccccccccCcHHHHHHHHHHHHhhCcCeEEEEeCCcccchHH--HHHhCChHHHHHH
Confidence 4789999999966533211 111225677888899999888886655 9999987532 121 2334455
Q ss_pred HHhccCCCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHH-HHhhCCCe----eEeccc-
Q psy11941 89 RKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALD-IVSNSGLV----NYFGKC- 162 (313)
Q Consensus 89 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~-~l~~~~~~----~~~~~~- 162 (313)
+. .+..+. +.||||+..+...+ ++ +++...+- |+....
T Consensus 81 N~---------------------------------lgyDa~-~lGNHEFd~G~~~l--~~~~~~~a~fp~L~aNv~~~~~ 124 (530)
T 4h1s_A 81 NA---------------------------------LRYDAM-ALGNHEFDNGVEGL--IEPLLKEAKFPILSANIKAKGP 124 (530)
T ss_dssp HH---------------------------------TTCCEE-ECCGGGGTTTTHHH--HTTTTTTCSSCEECTTEEECTT
T ss_pred hc---------------------------------cCCCEE-EEchhhhccCHHHH--HHHHHhhCCCCEEEEeeeccCC
Confidence 53 344554 55999997753211 11 12222211 111110
Q ss_pred --ccCCceeeecEEEeeCCeEEEEEecCCCchH----------------HHHHHhhhcchhccCCCCCCCcceEEEeecc
Q psy11941 163 --TNLNEITLNPLIIQKNETKVAIFGLGYVKDE----------------RLCNMIKHNKVKYMKPTDDKDIIYILVLHQN 224 (313)
Q Consensus 163 --~~~~~~~~~~~~l~~~~~~~~i~gl~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~ 224 (313)
.....+..++.+++.++.++.|+|+-...-. ...+...+ ++. ...+ ..|+++|..
T Consensus 125 ~~~~~~~~~~py~I~~~~g~kIgviGltt~~~~~~~~~~~~~~f~d~v~~~~~~v~~-----Lr~-~g~D-~II~LsH~G 197 (530)
T 4h1s_A 125 LASQISGLYLPYKVLPVGDEVVGIVGYTSKETPFLSNPGTNLVFEDEITALQPEVDK-----LKT-LNVN-KIIALGHSG 197 (530)
T ss_dssp HHHHHTTTSBSEEEEEETTEEEEEEEEECTTHHHHSCCCTTEEECCHHHHHHHHHHH-----HHH-TTCC-CEEEEEESC
T ss_pred cccccCCcccceEEEEeccEEEeeccccccceeeeccCCCCcccCcHHHHHHHHHhh-----hhh-cCCC-EEEEeccCC
Confidence 0011111223556778999999996321110 11111111 221 1234 889999996
Q ss_pred ccCCCCcCccccccCCCcccEEEeCCccCcc
Q psy11941 225 RPERGTVKNIAEDSIPSFFHFILWGHEHECR 255 (313)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~d~v~~GH~H~~~ 255 (313)
... +......+ .++|+++.||.|...
T Consensus 198 ~~~----d~~la~~v-~giD~IlgGHsH~~~ 223 (530)
T 4h1s_A 198 FEM----DKLIAQKV-RGVDVVVGGHSNTFL 223 (530)
T ss_dssp HHH----HHHHHHHS-TTCCEEECCSSCCCB
T ss_pred chH----HHHHHhcC-CCCCeeccCCcccee
Confidence 421 11111112 579999999999754
No 39
>3c9f_A 5'-nucleotidase; 2',3'-cyclic phosphodiesterase, protein STR initiative, PSI-2, NEW YORK SGX research center for structu genomics, nysgxrc; 1.90A {Candida albicans} SCOP: d.114.1.1 d.159.1.2
Probab=98.57 E-value=8.2e-08 Score=94.80 Aligned_cols=57 Identities=21% Similarity=0.285 Sum_probs=35.6
Q ss_pred CCCeEEEEEeeccccCcccCCcC----ccchhHHHHHHHHHHHH-hcCCCE-EEEcCCcCCCC
Q psy11941 18 DRNTIRIMIASDIHLGYLETDRE----RGNDSFVSFEEILEQAL-DQEVDM-VLLGGDLFHIN 74 (313)
Q Consensus 18 ~~~~mkilh~SD~Hlg~~~~~~~----~~~~~~~~l~~ii~~~~-~~~~d~-vv~~GDlf~~~ 74 (313)
....++|+|++|+|......... .....+..+...++..+ +.+++. ++.+||+++..
T Consensus 12 ~~~~l~ILhtnD~Hg~~~~~~~~~~~~~~~Gg~a~l~~~i~~~~~~~~~~~LlldaGD~~~Gs 74 (557)
T 3c9f_A 12 TWNDINFVHTTDTHGWYSGHINQPLYHANWGDFISFTTHMRRIAHSRNQDLLLIDSGDRHDGN 74 (557)
T ss_dssp CCCSEEEEEECCCTTCTTCCSSCGGGCCCHHHHHHHHHHHHHHHHHTTCEEEEEECSCCCSSC
T ss_pred CceEEEEEEEcccccCccCcccccccccccchHHHHHHHHHHHHHhcCCCEEEEecCCCCCCc
Confidence 34589999999999875432110 01122455555555543 467885 57799999753
No 40
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr protein phosphatase, ppase, manganese, sulfate, viral protein; 2.15A {Enterobacteria phage lambda} SCOP: d.159.1.3
Probab=98.48 E-value=3.9e-08 Score=85.46 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=36.5
Q ss_pred CCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhc-CCCEEEEcCCcCCCCCC
Q psy11941 19 RNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQ-EVDMVLLGGDLFHINKP 76 (313)
Q Consensus 19 ~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~-~~d~vv~~GDlf~~~~~ 76 (313)
..+|||+++||+|.. +..|.++++.+... ++|.++++||+++.+..
T Consensus 10 ~~~~~i~visDiHg~------------~~~l~~~l~~~~~~~~~d~~i~~GD~~~~g~~ 56 (221)
T 1g5b_A 10 SKYRNIWVVGDLHGC------------YTNLMNKLDTIGFDNKKDLLISVGDLVDRGAE 56 (221)
T ss_dssp GGCSCEEEECCCTTC------------HHHHHHHHHHHTCCTTTCEEEECSCCSSSSSC
T ss_pred CCCceEEEEEcCCCC------------HHHHHHHHHHccCCCCCCEEEEeCCccCCCCC
Confidence 457999999999932 23577888887653 79999999999998754
No 41
>2z06_A Putative uncharacterized protein TTHA0625; metal binding protein, structural genomics, NPPSFA; 2.20A {Thermus thermophilus} SCOP: d.159.1.10 PDB: 2cv9_A
Probab=98.46 E-value=5.8e-06 Score=73.21 Aligned_cols=169 Identities=13% Similarity=0.137 Sum_probs=98.0
Q ss_pred EEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEE-cCCcCCCCCCCHHHHHHHHHHHHHhccCCCceee
Q psy11941 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLL-GGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFI 100 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~-~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 100 (313)
||||.++|+=-. .....+...+...+++. |++++ +||.++....+. ...+.|..
T Consensus 1 m~ilfiGDi~g~----------~G~~~v~~~l~~lr~~~-d~vi~ngen~~~G~g~~~----~~~~~l~~---------- 55 (252)
T 2z06_A 1 MRVLFIGDVMAE----------PGLRAVGLHLPDIRDRY-DLVIANGENAARGKGLDR----RSYRLLRE---------- 55 (252)
T ss_dssp CEEEEECCBCHH----------HHHHHHHHHHHHHGGGC-SEEEEECTTTTTTSSCCH----HHHHHHHH----------
T ss_pred CEEEEEEecCCc----------ccHHHHHHHHHHHHhhC-CEEEEeCCCccCCCCcCH----HHHHHHHh----------
Confidence 799999999321 23346888999998888 98888 788887765542 33344543
Q ss_pred eeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEecccccCCceeeecEEEeeCCe
Q psy11941 101 DVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNET 180 (313)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (313)
.+..++.+ |||++..+ ..+.++.....+ ...+... ..--....+++.++.
T Consensus 56 -----------------------~G~D~~T~-GNHefD~~----~l~~~l~~~~~v-rpaN~~~-~~pg~~~~i~~~~G~ 105 (252)
T 2z06_A 56 -----------------------AGVDLVSL-GNHAWDHK----EVYALLESEPVV-RPLNYPP-GTPGKGFWRLEVGGE 105 (252)
T ss_dssp -----------------------HTCCEEEC-CTTTTSCT----THHHHHHHSSEE-CCTTSCS-SCSSCSEEEEEETTE
T ss_pred -----------------------CCCCEEEe-ccEeeECc----hHHHHhccCCce-EeecCCC-CCCCCCeEEEEECCE
Confidence 46778755 99999874 234555443311 1111110 000012245677888
Q ss_pred EEEEEec-------CCCchHH-HHHHhhhcchhccCCCCCCCcceEEEeeccccCCCCcCccccccCCCcccEEEeCCcc
Q psy11941 181 KVAIFGL-------GYVKDER-LCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHEH 252 (313)
Q Consensus 181 ~~~i~gl-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~~~~~~~~~~~~~~d~v~~GH~H 252 (313)
++.|+++ ++.++.. ..+.+ +.++ .+ .-|+.+|...... +......++.++|+|+.||+|
T Consensus 106 kIgVi~l~g~~~~~~~~~pf~~~~~~v-----~~lk----~d-~IIv~~H~g~tse---k~~la~~~dg~Vd~VvGgHTH 172 (252)
T 2z06_A 106 SLLFVQVMGRIFMDPLDDPFRALDRLL-----EEEK----AD-YVLVEVHAEATSE---KMALAHYLDGRASAVLGTHTH 172 (252)
T ss_dssp EEEEEEEECCTTSCCCCCHHHHHHHHH-----HHCC----CS-EEEEEEECSCHHH---HHHHHHHHBTTBSEEEEESSC
T ss_pred EEEEEEcccccCccccCCHHHHHHHHH-----HHhC----CC-EEEEEeCCCcHHH---HHHHHHhCCCCeEEEEcCCCC
Confidence 9888875 2333322 12222 2222 34 8999999854210 111111233469999999999
Q ss_pred CccccC
Q psy11941 253 ECRIKP 258 (313)
Q Consensus 253 ~~~~~~ 258 (313)
.+..-+
T Consensus 173 v~t~d~ 178 (252)
T 2z06_A 173 VPTLDA 178 (252)
T ss_dssp SCBSCC
T ss_pred cCCCcc
Confidence 977643
No 42
>2yeq_A Apased, PHOD, alkaline phosphatase D; hydrolase, phosphodiesterase; HET: PE5; 1.93A {Bacillus subtilis}
Probab=98.42 E-value=1.8e-05 Score=77.65 Aligned_cols=41 Identities=15% Similarity=0.219 Sum_probs=29.1
Q ss_pred CeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCC
Q psy11941 20 NTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHI 73 (313)
Q Consensus 20 ~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~ 73 (313)
..+||+++||.+..... +.+++.+ .+.++|++|++||++..
T Consensus 115 ~~~rfa~~sc~~~~~g~---------~~~~~~i----a~~~~D~vlhlGD~iY~ 155 (527)
T 2yeq_A 115 PQMTFAFASCQQYEHGY---------YTAYKHM----AKEKLDLVFHLGDYIYE 155 (527)
T ss_dssp CCEEEEEECCCCGGGCC---------CHHHHHH----TTSCCSEEEECSCSSCC
T ss_pred CCeEEEEEecCCCCCCc---------cHHHHHH----HhcCCCEEEecCCcccC
Confidence 58999999999863211 1233333 35799999999999854
No 43
>1t71_A Phosphatase, conserved HYPO; crystal, X-RAY crystallography, structural GENO berkeley structural genomics center, BSGC, PSI; 2.10A {Mycoplasma pneumoniae M129} SCOP: d.159.1.9
Probab=98.42 E-value=5e-06 Score=74.85 Aligned_cols=174 Identities=18% Similarity=0.179 Sum_probs=96.6
Q ss_pred CeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhc-CCCEEEEcCCcCCCCC-CCHHHHHHHHHHHHHhccCCCc
Q psy11941 20 NTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQ-EVDMVLLGGDLFHINK-PSPTTLKKCLETLRKYCIGDRS 97 (313)
Q Consensus 20 ~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~-~~d~vv~~GDlf~~~~-~~~~~~~~~~~~l~~l~~~~~~ 97 (313)
..|||++++|+| |. .....+...+...+++ ++|++++.||-+..+. .+ ....+.|..
T Consensus 3 ~~m~ilf~GDv~-G~---------~G~~~l~~~l~~lr~~~~~d~vi~Ngen~~gG~g~~----~~~~~~ln~------- 61 (281)
T 1t71_A 3 NSIKFIFLGDVY-GK---------AGRNIIKNNLAQLKSKYQADLVIVNAENTTHGKGLS----LKHYEFLKE------- 61 (281)
T ss_dssp CCCEEEEECEEB-HH---------HHHHHHHTTHHHHHHHHTCSEEEEECTBTTTTSSCC----HHHHHHHHH-------
T ss_pred ceEEEEEECCcC-Ch---------HHHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCcC----HHHHHHHHh-------
Confidence 469999999999 22 1344566777777765 6899999777765543 33 234445553
Q ss_pred eeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEecccccCC---ceeeecEE
Q psy11941 98 VFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLN---EITLNPLI 174 (313)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~ 174 (313)
.++.+..+ |||++..+. ..+.++... ..-...+..... ..-..+.+
T Consensus 62 --------------------------~G~Da~Tl-GNHefD~g~---~~~~~l~~~-~~v~~aN~p~~~~~~~~g~g~~I 110 (281)
T 1t71_A 62 --------------------------AGVNYITM-GNHTWFQKL---DLAVVINKK-DLVRPLNLDTSFAFHNLGQGSLV 110 (281)
T ss_dssp --------------------------HTCCEEEC-CTTTTCCGG---GHHHHTTCT-TEECBSCBCTTSTTTTSSBSEEE
T ss_pred --------------------------cCCCEEEE-ccCcccCCc---cHHHHhhhc-CEEeeccCCcccccccCCCCeEE
Confidence 46677777 999998752 123333322 110100110000 00011245
Q ss_pred EeeCCeEEEEEecC----CCc-----hHH-HHHHhhhcchhccCCCCCCCcceEEEeeccccCCCCcCccccccCCCccc
Q psy11941 175 IQKNETKVAIFGLG----YVK-----DER-LCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTVKNIAEDSIPSFFH 244 (313)
Q Consensus 175 l~~~~~~~~i~gl~----~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~~~~~~~~~~~~~~d 244 (313)
++.++.++.|+|+- |.. +.. ..++ + + +...+ +.|+++|...... .......++.++|
T Consensus 111 ~e~~G~kIgVIgl~g~~~f~~~~~~~pf~~a~~~-----v---~-~~~~d-iIIv~~H~g~t~E---k~~la~~~dg~VD 177 (281)
T 1t71_A 111 FEFNKAKIRITNLLGTSVPLPFKTTNPFKVLKEL-----I---L-KRDCD-LHIVDFHAETTSE---KNAFCMAFDGYVT 177 (281)
T ss_dssp EECSSCEEEEEEEECTTSCCSSCBCCHHHHHHHH-----H---T-TCCCS-EEEEEEECSCHHH---HHHHHHHHTTTSS
T ss_pred EEECCEEEEEEEeeccccccCccccCHHHHHHHH-----H---h-hcCCC-EEEEEeCCCchHH---HHHHHHhCCCCeE
Confidence 66778899888852 322 211 1111 1 1 12234 8999999853210 1111112345699
Q ss_pred EEEeCCccCccccC
Q psy11941 245 FILWGHEHECRIKP 258 (313)
Q Consensus 245 ~v~~GH~H~~~~~~ 258 (313)
+|+.||+|.....+
T Consensus 178 ~VvGgHTHv~t~d~ 191 (281)
T 1t71_A 178 TIFGTHTHVPSADL 191 (281)
T ss_dssp EEEEESSSSCCTTC
T ss_pred EEEeCCCCcCCCce
Confidence 99999999988643
No 44
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine tetraphosphatase, monomer, PSI- 2, protein structure initiative, nysgrc; 2.05A {Trypanosoma brucei}
Probab=98.38 E-value=1.9e-07 Score=83.57 Aligned_cols=44 Identities=30% Similarity=0.425 Sum_probs=35.1
Q ss_pred EEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCC-CEEEEcCCcCCCCCCC
Q psy11941 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEV-DMVLLGGDLFHINKPS 77 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~-d~vv~~GDlf~~~~~~ 77 (313)
+||+++||+| |. +..|.++++.+..... |.+|++||+++.+..+
T Consensus 19 ~~i~visDiH-g~-----------~~~l~~~l~~~~~~~~~d~ii~~GD~vd~g~~~ 63 (262)
T 2qjc_A 19 GRVIIVGDIH-GC-----------RAQLEDLLRAVSFKQGSDTLVAVGDLVNKGPDS 63 (262)
T ss_dssp SCEEEECCCT-TC-----------HHHHHHHHHHHTCCTTTSEEEECSCCSSSSSCH
T ss_pred CeEEEEeCCC-CC-----------HHHHHHHHHHHhccCCCCEEEEecCCCCCCCCH
Confidence 4999999999 32 2457888888877665 9999999999987543
No 45
>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture, hydrolase; 2.72A {Shigella flexneri 2A}
Probab=98.29 E-value=3.5e-07 Score=82.66 Aligned_cols=69 Identities=23% Similarity=0.240 Sum_probs=50.4
Q ss_pred EEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHh-cCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceee
Q psy11941 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALD-QEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFI 100 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~-~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 100 (313)
||++++||+|... ..|.++++.+.. .+.|.++++||+++.+..+.+ +++.|..+
T Consensus 1 M~i~vigDiHG~~------------~~l~~ll~~~~~~~~~d~~v~lGD~vdrG~~s~~----~l~~l~~l--------- 55 (280)
T 2dfj_A 1 MATYLIGDVHGCY------------DELIALLHKVEFTPGKDTLWLTGDLVARGPGSLD----VLRYVKSL--------- 55 (280)
T ss_dssp -CEEEECCCCSCH------------HHHHHHHHHTTCCTTTCEEEECSCCSSSSSCHHH----HHHHHHHT---------
T ss_pred CeEEEEecCCCCH------------HHHHHHHHHhCCCCCCCEEEEeCCcCCCCCccHH----HHHHHHhC---------
Confidence 7899999999432 357788887765 578999999999998865433 34455432
Q ss_pred eeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCC
Q psy11941 101 DVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~ 139 (313)
+.++++|.||||...
T Consensus 56 ------------------------~~~~~~v~GNHe~~~ 70 (280)
T 2dfj_A 56 ------------------------GDSVRLVLGNHDLHL 70 (280)
T ss_dssp ------------------------GGGEEECCCHHHHHH
T ss_pred ------------------------CCceEEEECCCcHHH
Confidence 238999999999643
No 46
>1t70_A Phosphatase; crystal, X-RAY crystallography, structural GENO berkeley structural genomics center, BSGC, PSI, protein STR initiative; 2.30A {Deinococcus radiodurans} SCOP: d.159.1.9
Probab=98.25 E-value=2.7e-05 Score=69.08 Aligned_cols=170 Identities=12% Similarity=0.047 Sum_probs=95.2
Q ss_pred EEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEE-cCCcCCCCCCCHHHHHHHHHHHHHhccCCCceee
Q psy11941 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLL-GGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFI 100 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~-~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 100 (313)
|||+.++|+= |. ...+++...++..+++. |++++ +||.++....+. ...+.|..
T Consensus 1 m~ilf~GDv~-g~---------~G~~~~~~~l~~lr~~~-d~vi~nge~~~~G~g~~~----~~~~~l~~---------- 55 (255)
T 1t70_A 1 MRVLFIGDVF-GQ---------PGRRVLQNHLPTIRPQF-DFVIVNMENSAGGFGMHR----DAARGALE---------- 55 (255)
T ss_dssp CEEEEECCBB-HH---------HHHHHHHHHHHHHGGGC-SEEEEECTBTTTTSSCCH----HHHHHHHH----------
T ss_pred CEEEEEeccC-Ch---------HHHHHHHHHHHHHHhhC-CEEEECCCCccCCcCCCH----HHHHHHHh----------
Confidence 7999999995 32 23346788888888877 99888 555555433432 33445553
Q ss_pred eeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCCCCcCchHHHHhhCC-CeeEecccccCCceeeec-EEEeeC
Q psy11941 101 DVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSG-LVNYFGKCTNLNEITLNP-LIIQKN 178 (313)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~-~~l~~~ 178 (313)
.++.++.+ |||++... ...+++.... ..-...++. .+.....+ .+++.+
T Consensus 56 -----------------------~G~Da~Tl-GNHefD~~----~l~~~l~~~~~~~~~~aN~~-~~~~pg~g~~I~~~~ 106 (255)
T 1t70_A 56 -----------------------AGAGCLTL-GNHAWHHK----DIYPMLSEDTYPIVRPLNYA-DPGTPGVGWRTFDVN 106 (255)
T ss_dssp -----------------------HTCSEEEC-CTTTTSST----THHHHHHTTCSCEECCSCCC-CTTCSSCSEEEEECS
T ss_pred -----------------------CCCCEEEe-ccccccCc----hHHHHHhhCCCcEEEEeccC-CCCCCCCCeEEEEEC
Confidence 46777777 99999863 2345555544 211111111 00000112 456677
Q ss_pred CeEEEEEecC-------CCchHH-HHHHhhhcchhccCCCCCCCcceEEEeeccccCCCCcCccccccCCCcccEEEeCC
Q psy11941 179 ETKVAIFGLG-------YVKDER-LCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTVKNIAEDSIPSFFHFILWGH 250 (313)
Q Consensus 179 ~~~~~i~gl~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Ilv~H~~~~~~~~~~~~~~~~~~~~~d~v~~GH 250 (313)
+.++.|+++- +.++.+ ..+.+ +.+ ..+ +.|+.+|...... +......++.++|+|+.||
T Consensus 107 G~kIgVigl~g~~~~~~~~~p~~~~~~~v-----~~l----~~d-~IIv~~H~e~t~E---k~~la~~~dg~vd~VvGgH 173 (255)
T 1t70_A 107 GEKLTVVNLLGRVFMEAVDNPFRTMDALL-----ERD----DLG-TVFVDFHAEATSE---KEAMGWHLAGRVAAVIGTH 173 (255)
T ss_dssp SSEEEEEEEECCTTSCCCSCHHHHHHHHT-----TCS----SCC-EEEEEEECSCHHH---HHHHHHHHTTSSSEEEEES
T ss_pred CEEEEEEEeecCcCcccccCHHHHHHHHH-----HHh----CCC-EEEEEeCCCChHH---HHHHHHhCCCCeEEEEeCC
Confidence 8898888752 222221 11111 112 224 8899999743210 1111112345699999999
Q ss_pred ccCccccC
Q psy11941 251 EHECRIKP 258 (313)
Q Consensus 251 ~H~~~~~~ 258 (313)
+|.+...+
T Consensus 174 THv~~~d~ 181 (255)
T 1t70_A 174 THVPTADT 181 (255)
T ss_dssp SCSCBSCC
T ss_pred CCcCCCce
Confidence 99988643
No 47
>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform; protein-protein complex, heat repeat, signaling protein; HET: OKA; 2.60A {Homo sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C* 3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C* 2nyl_C*
Probab=98.13 E-value=3e-06 Score=77.53 Aligned_cols=74 Identities=16% Similarity=0.195 Sum_probs=53.4
Q ss_pred eEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceee
Q psy11941 21 TIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFI 100 (313)
Q Consensus 21 ~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 100 (313)
.+++.++||+|-. +..|.++++.+.....+.++++||+.|.+..+.+++..+... +.
T Consensus 49 ~~~i~viGDIHG~------------~~~L~~ll~~~~~~~~~~~vflGD~VDRG~~s~evl~lL~~l-k~---------- 105 (309)
T 2ie4_C 49 RCPVTVCGDVHGQ------------FHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVAL-KV---------- 105 (309)
T ss_dssp CSSEEEECCCTTC------------HHHHHHHHHHHCCTTTSCEEECSCCSSSSTTHHHHHHHHHHH-HH----------
T ss_pred cCCEEEEecCCCC------------HHHHHHHHHHcCCCCCCEEEEeCCccCCCCChHHHHHHHHHH-Hh----------
Confidence 4789999999932 235778888777667788999999999987665554443332 21
Q ss_pred eeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCC
Q psy11941 101 DVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~ 139 (313)
..+-.++++.||||...
T Consensus 106 ----------------------~~p~~v~~lrGNHE~~~ 122 (309)
T 2ie4_C 106 ----------------------RYRERITILRGNHESRQ 122 (309)
T ss_dssp ----------------------HCTTTEEECCCTTSSTT
T ss_pred ----------------------hCCCcEEEEeCCCCHHH
Confidence 12346999999999875
No 48
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors, drug design, cytoplasm, hydrolase, iron, manganese, metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens} SCOP: d.159.1.3 PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A* 3h68_A* 3h69_A* 1s95_A
Probab=98.12 E-value=5.7e-06 Score=75.67 Aligned_cols=78 Identities=17% Similarity=0.181 Sum_probs=54.7
Q ss_pred CCCCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCC-CEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCC
Q psy11941 17 DDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEV-DMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGD 95 (313)
Q Consensus 17 ~~~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~-d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~ 95 (313)
..+..+|+.++||+|-. +..|.++++.+..... +.+++.||++|.+..+.+++..+... +.
T Consensus 55 ~~p~~~ri~viGDIHG~------------~~~L~~ll~~~g~~~~~~~~vflGD~VDRG~~s~evl~lL~~l-k~----- 116 (315)
T 3h63_A 55 TLKETEKITVCGDTHGQ------------FYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGF-KL----- 116 (315)
T ss_dssp CCCTTCEEEEECCCTTC------------HHHHHHHHHHHCCCBTTBCEEEESCCSSSSTTHHHHHHHHHHH-HH-----
T ss_pred ecCCCceEEEEecCCCC------------HHHHHHHHHHhCCCCCCCEEEEeCCccCCCcChHHHHHHHHHh-hh-----
Confidence 55567899999999933 3457778877655444 45999999999997766665544332 21
Q ss_pred CceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCC
Q psy11941 96 RSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~ 139 (313)
..+-.++++.||||...
T Consensus 117 ---------------------------~~p~~v~~lrGNHE~~~ 133 (315)
T 3h63_A 117 ---------------------------LYPDHFHLLRGNHETDN 133 (315)
T ss_dssp ---------------------------HSTTTEEEECCTTSSHH
T ss_pred ---------------------------hcCCcEEEEecCccccc
Confidence 12346999999999754
No 49
>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle, hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A
Probab=98.09 E-value=2.8e-06 Score=78.78 Aligned_cols=53 Identities=17% Similarity=0.213 Sum_probs=38.1
Q ss_pred CeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhc--------CCCEEEEcCCcCCCCCCCHHHHHHH
Q psy11941 20 NTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQ--------EVDMVLLGGDLFHINKPSPTTLKKC 84 (313)
Q Consensus 20 ~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~--------~~d~vv~~GDlf~~~~~~~~~~~~~ 84 (313)
.+||++++||+|... ..|.++++.+... ++|.+|++||++|.+..+.+.+..+
T Consensus 69 ~~~~i~vigDiHG~~------------~~l~~ll~~~~~~~~~~~~~~~~d~~v~lGD~vdrG~~s~evl~~l 129 (342)
T 2z72_A 69 GIKKVVALSDVHGQY------------DVLLTLLKKQKIIDSDGNWAFGEGHMVMTGDIFDRGHQVNEVLWFM 129 (342)
T ss_dssp CCCEEEEECCCTTCH------------HHHHHHHHHTTSBCTTSCBCCTTCEEEECSCCSSSSSCHHHHHHHH
T ss_pred CCCCEEEEECCCCCH------------HHHHHHHHhcCCCcccccccCCCCEEEEECCCcCCCCCHHHHHHHH
Confidence 478999999999332 3467777765422 5799999999999987655544433
No 50
>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase, toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN; 2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3
Probab=98.05 E-value=5e-06 Score=76.61 Aligned_cols=74 Identities=23% Similarity=0.230 Sum_probs=53.7
Q ss_pred eEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceee
Q psy11941 21 TIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFI 100 (313)
Q Consensus 21 ~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 100 (313)
.+++.++||+|-. +..|.++++.+.....+.+|++||+.|.+..+.+++..+... +.
T Consensus 56 ~~~i~viGDIHG~------------~~~L~~ll~~~g~~~~~~~vflGD~VDRG~~s~evl~lL~~l-k~---------- 112 (330)
T 1fjm_A 56 EAPLKICGDIHGQ------------YYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAY-KI---------- 112 (330)
T ss_dssp CSSEEEECBCTTC------------HHHHHHHHHHHCSTTSSCEEECSCCSSSSSCHHHHHHHHHHH-HH----------
T ss_pred cCceEEecCCCCC------------HHHHHHHHHHhCCCCcceEEeCCCcCCCCCChHHHHHHHHHh-hh----------
Confidence 3579999999932 345778888877667788999999999987766655544332 21
Q ss_pred eeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCC
Q psy11941 101 DVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~ 139 (313)
..+-.++++.||||...
T Consensus 113 ----------------------~~p~~v~~lrGNHE~~~ 129 (330)
T 1fjm_A 113 ----------------------KYPENFFLLRGNHECAS 129 (330)
T ss_dssp ----------------------HSTTTEEECCCTTSSHH
T ss_pred ----------------------hcCCceEEecCCchHhh
Confidence 12346999999999864
No 51
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.02 E-value=7.2e-06 Score=79.23 Aligned_cols=78 Identities=17% Similarity=0.169 Sum_probs=55.3
Q ss_pred CCCCeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcC-CCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCC
Q psy11941 17 DDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQE-VDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGD 95 (313)
Q Consensus 17 ~~~~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~-~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~ 95 (313)
..+..||++++||+|-. +..|.++++.+.... .+.+|++||++|.+..+.+++..+...-.
T Consensus 208 ~~~~~~~~~vigDiHG~------------~~~l~~~l~~~~~~~~~~~~v~lGD~vdrG~~s~e~~~~l~~l~~------ 269 (477)
T 1wao_1 208 TLKETEKITVCGDTHGQ------------FYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKL------ 269 (477)
T ss_dssp CCCSSCEEEEECBCTTC------------HHHHHHHHHHHCCCBTTBCEEEESCCSSSSTTHHHHHHHHHHHHH------
T ss_pred ecCCCcceEEEeCCCCC------------HHHHHHHHHHcCCCCCcCeEEEeccccCCCcchHHHHHHHHHHHh------
Confidence 44557899999999932 335777887776544 35699999999998776666655443211
Q ss_pred CceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCC
Q psy11941 96 RSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~ 139 (313)
..+..|+++.||||...
T Consensus 270 ---------------------------~~~~~~~~lrGNHE~~~ 286 (477)
T 1wao_1 270 ---------------------------LYPDHFHLLRGNHETDN 286 (477)
T ss_dssp ---------------------------HSTTTEEEECCTTSSHH
T ss_pred ---------------------------hCCCceEeecCCccHHH
Confidence 12458999999999753
No 52
>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein, structural genomics, PSI-2, protein structu initiative; 2.30A {Saccharomyces cerevisiae}
Probab=97.98 E-value=1.4e-05 Score=73.74 Aligned_cols=75 Identities=16% Similarity=0.147 Sum_probs=53.8
Q ss_pred CeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCC-CEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCce
Q psy11941 20 NTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEV-DMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSV 98 (313)
Q Consensus 20 ~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~-d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~ 98 (313)
..||+.++||+|-. +..|.++++.+..... +.+|+.||++|.+..+.+++..+... +.
T Consensus 62 ~~~ri~viGDIHG~------------~~~L~~ll~~~g~~~~~~~~vflGD~VDRG~~s~evl~lL~~l-k~-------- 120 (335)
T 3icf_A 62 PDVKISVCGDTHGQ------------FYDVLNLFRKFGKVGPKHTYLFNGDFVDRGSWSCEVALLFYCL-KI-------- 120 (335)
T ss_dssp TTCEEEEECCCTTC------------HHHHHHHHHHHCCCBTTEEEEECSCCSSSSTTHHHHHHHHHHH-HH--------
T ss_pred cCceEEEEecCCCC------------HHHHHHHHHHcCCCCCCcEEEEeCCccCCCcChHHHHHHHHHH-hh--------
Confidence 78999999999933 3457778877765444 45999999999998766666644333 21
Q ss_pred eeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCC
Q psy11941 99 FIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~ 139 (313)
..+-.++++.||||...
T Consensus 121 ------------------------~~p~~v~llrGNHE~~~ 137 (335)
T 3icf_A 121 ------------------------LHPNNFFLNRGNHESDN 137 (335)
T ss_dssp ------------------------HCTTTEEECCCTTSSHH
T ss_pred ------------------------hCCCcEEEecCchhhhh
Confidence 12346999999999653
No 53
>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit; carbohydrate metabolism, cell cycle, cell division; HET: 1ZN; 1.63A {Homo sapiens} SCOP: d.159.1.3 PDB: 3e7b_A* 3egg_A* 3egh_A* 3hvq_A 3v4y_A* 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A 2o8a_A 1u32_A* 1s70_A*
Probab=97.98 E-value=8.9e-06 Score=73.86 Aligned_cols=73 Identities=23% Similarity=0.234 Sum_probs=54.1
Q ss_pred EEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeee
Q psy11941 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFID 101 (313)
Q Consensus 22 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 101 (313)
+++.++||+|-. +..|.++++.+.....+.+++.||++|.+..+.+++..+... +.
T Consensus 56 ~~i~viGDIHG~------------~~~L~~ll~~~g~~~~~~~vfLGD~VDrG~~s~evl~lL~~l-k~----------- 111 (299)
T 3e7a_A 56 APLKICGDIHGQ------------YYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAY-KI----------- 111 (299)
T ss_dssp SSEEEECBCTTC------------HHHHHHHHHHHCSTTSSCEEECSCCSSSSSCHHHHHHHHHHH-HH-----------
T ss_pred CCEEEEecCCCC------------HHHHHHHHHHhCCCCCccEEeCCcccCCCCCcHHHHHHHHHH-Hh-----------
Confidence 479999999933 346788888887777788999999999998766666544332 21
Q ss_pred eccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCC
Q psy11941 102 VISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~ 139 (313)
..+-.++++.||||...
T Consensus 112 ---------------------~~p~~v~~lrGNHE~~~ 128 (299)
T 3e7a_A 112 ---------------------KYPENFFLLRGNHECAS 128 (299)
T ss_dssp ---------------------HSTTTEEECCCTTSSHH
T ss_pred ---------------------hCCCcEEEEecCchhhh
Confidence 12346999999999753
No 54
>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A* 1tco_A* 1mf8_A* 2jog_A
Probab=97.87 E-value=1.6e-05 Score=73.69 Aligned_cols=74 Identities=18% Similarity=0.184 Sum_probs=53.9
Q ss_pred eEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceee
Q psy11941 21 TIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFI 100 (313)
Q Consensus 21 ~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 100 (313)
.+++.++||+|-. +..|.++++.+.....+.+++.||+.|.+..+.+++..+... +.
T Consensus 69 ~~pi~ViGDIHG~------------~~dL~~ll~~~g~~~~~~~vfLGD~VDRG~~s~Evl~lL~~l-k~---------- 125 (357)
T 3ll8_A 69 DAPVTVCGDIHGQ------------FFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWAL-KI---------- 125 (357)
T ss_dssp CSSEEEECCCTTC------------HHHHHHHHHHHCCTTTCCEEECSCCSSSSTTHHHHHHHHHHH-HH----------
T ss_pred cccceeeccCCCC------------HHHHHHHHHhcCCCCCcEEEECCCccCCCcChHHHHHHHHHh-hh----------
Confidence 3579999999933 345777888777777888999999999997766665544332 21
Q ss_pred eeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCC
Q psy11941 101 DVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~ 139 (313)
..+-.++++.||||...
T Consensus 126 ----------------------~~p~~v~llrGNHE~~~ 142 (357)
T 3ll8_A 126 ----------------------LYPKTLFLLRGNHECRH 142 (357)
T ss_dssp ----------------------HCTTTEEECCCTTSSHH
T ss_pred ----------------------hcCCcEEEEeCchhhhh
Confidence 12346999999999753
No 55
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase, immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
Probab=97.81 E-value=2.2e-05 Score=75.82 Aligned_cols=74 Identities=18% Similarity=0.184 Sum_probs=53.2
Q ss_pred eEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceee
Q psy11941 21 TIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFI 100 (313)
Q Consensus 21 ~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 100 (313)
.+++.+++|+|-. +..|.++++.......+.+|++||+.|.+..+.+++..+... +.
T Consensus 82 ~~pI~VIGDIHGq------------~~dL~~LL~~~g~p~~d~yVFLGDyVDRGp~S~Evl~lL~aL-k~---------- 138 (521)
T 1aui_A 82 DAPVTVCGDIHGQ------------FFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWAL-KI---------- 138 (521)
T ss_dssp CSSEEEECCCTTC------------HHHHHHHHHHHCCTTTCCEEECSCCSSSSSCHHHHHHHHHHH-HH----------
T ss_pred ccceeeccCCCCC------------HHHHHHHHHhcCCCCcceEEEcCCcCCCCCCHHHHHHHHHHH-hh----------
Confidence 4679999999932 345777877655556788999999999998766666544432 21
Q ss_pred eeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCC
Q psy11941 101 DVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS 139 (313)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~ 139 (313)
..+-.++++.||||...
T Consensus 139 ----------------------~~P~~v~lLRGNHE~~~ 155 (521)
T 1aui_A 139 ----------------------LYPKTLFLLRGNHECRH 155 (521)
T ss_dssp ----------------------HSTTTEEECCCTTSSHH
T ss_pred ----------------------hCCCeEEEecCCccHHH
Confidence 12346999999999753
No 56
>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}
Probab=97.51 E-value=0.00022 Score=68.49 Aligned_cols=84 Identities=21% Similarity=0.273 Sum_probs=56.0
Q ss_pred CeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHH-----------HhcCCCEEEEcCCcCCCCCCC-----------
Q psy11941 20 NTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQA-----------LDQEVDMVLLGGDLFHINKPS----------- 77 (313)
Q Consensus 20 ~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~-----------~~~~~d~vv~~GDlf~~~~~~----------- 77 (313)
..-+++.+||+|+|.... .....|+.+++.. ...++..+|++||+++.....
T Consensus 199 ~~~~ialVSGL~igs~~~------~~~~~~~ll~d~L~G~~g~~~~~~~as~I~rlIIAGn~v~~~~~~~e~~~~~~y~~ 272 (476)
T 3e0j_A 199 TDRFVLLVSGLGLGGGGG------ESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLT 272 (476)
T ss_dssp SCCEEEEECCCCBTSSCH------HHHHHHHHHHHHHHTCSSCHHHHHHHTTEEEEEEESCSBCC-------------CH
T ss_pred CCCEEEEECCcccCCCcc------cchHHHHHHHHHHcCCCCCccccchhhceeEEEEECCccccccccchhhhhhhccc
Confidence 456999999999998531 1122344443333 345799999999999874221
Q ss_pred -------HHHHHHHHHHHHHhccCCCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcCCCCCCCC
Q psy11941 78 -------PTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSG 140 (313)
Q Consensus 78 -------~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~GNHD~~~~ 140 (313)
.+.++.+.++|.++. ..+||.++|||||....
T Consensus 273 ~~~~~~~~~~~~~ld~~L~~l~-------------------------------~~i~V~lmPG~~DP~~~ 311 (476)
T 3e0j_A 273 KKTQAASVEAVKMLDEILLQLS-------------------------------ASVPVDVMPGEFDPTNY 311 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------------------------------TTSCEEEECCTTSSSCS
T ss_pred cccchhhHHHHHHHHHHHHhcc-------------------------------cCceEEecCCCCCcccc
Confidence 134566666766653 46899999999998763
No 57
>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=95.44 E-value=0.033 Score=53.20 Aligned_cols=49 Identities=8% Similarity=0.278 Sum_probs=39.7
Q ss_pred CeEEEEEeeccccCcccCCcCccchhHHHHHHHHHHHHhc-CCCEEEEcCCcCCCCC
Q psy11941 20 NTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQ-EVDMVLLGGDLFHINK 75 (313)
Q Consensus 20 ~~mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~ii~~~~~~-~~d~vv~~GDlf~~~~ 75 (313)
..++|+++|+.+...... .++-|.++++.+.+. ++|.+|++|.+.|...
T Consensus 146 ~~l~ivvAsGPyT~sdnl-------~yepL~~Ll~~v~~~~kPdvLIL~GPFvD~~h 195 (460)
T 3flo_A 146 SSLKVIVTCGPYFANDNF-------SLELLQEFIDSINNEVKPHVLIMFGPFIDITH 195 (460)
T ss_dssp SCEEEEEEESCCSCSSCC-------CCHHHHHHHHHCCCCCCCSEEEEESCSSBTTC
T ss_pred CCcEEEEEeCCccCCCcc-------ChHHHHHHHHHHHhccCCCEEEEecCcccccC
Confidence 679999999999776432 234688999998875 8999999999998764
No 58
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr protein phosphatase, ppase, manganese, sulfate, viral protein; 2.15A {Enterobacteria phage lambda} SCOP: d.159.1.3
Probab=72.20 E-value=1.2 Score=37.53 Aligned_cols=30 Identities=10% Similarity=0.053 Sum_probs=22.8
Q ss_pred CcccEEEeCCccCccccCCCCCCCcccEEecCCC
Q psy11941 241 SFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSP 274 (313)
Q Consensus 241 ~~~d~v~~GH~H~~~~~~~~~~~~~~~i~~~GS~ 274 (313)
.+.++|++||+|.+.... .++..+++|||.
T Consensus 177 ~~~~~vv~GHth~~~~~~----~~~~~~in~Gs~ 206 (221)
T 1g5b_A 177 KGADTFIFGHTPAVKPLK----FANQMYIDTGAV 206 (221)
T ss_dssp BTSSEEEECSSCCSSCEE----ETTEEECCCCHH
T ss_pred cCCCEEEECCCCCcccee----eCCEEEEECCCC
Confidence 457899999999986542 255678899984
No 59
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=64.85 E-value=20 Score=30.76 Aligned_cols=49 Identities=14% Similarity=0.311 Sum_probs=33.1
Q ss_pred HHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEcC
Q psy11941 54 EQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTING 133 (313)
Q Consensus 54 ~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~G 133 (313)
+.+.+.+.|+|++.|. .....+.+..+.+.++ +..+|+++-||
T Consensus 30 ~~~~~~GtDaI~vGgs----~gvt~~~~~~~v~~ik---------------------------------~~~~Piil~p~ 72 (235)
T 3w01_A 30 DAICMSQTDAIMIGGT----DDVTEDNVIHLMSKIR---------------------------------RYPLPLVLEIS 72 (235)
T ss_dssp HHHHTSSCSEEEECCS----SCCCHHHHHHHHHHHT---------------------------------TSCSCEEEECC
T ss_pred HHHHHcCCCEEEECCc----CCcCHHHHHHHHHHhc---------------------------------CcCCCEEEecC
Confidence 3345889999999992 2233345555555555 34689999999
Q ss_pred CCCCCC
Q psy11941 134 NHDDPS 139 (313)
Q Consensus 134 NHD~~~ 139 (313)
|.+.-.
T Consensus 73 ~~~~~~ 78 (235)
T 3w01_A 73 NIESVM 78 (235)
T ss_dssp CSTTCC
T ss_pred CHHHhh
Confidence 987654
No 60
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=59.01 E-value=18 Score=30.92 Aligned_cols=50 Identities=16% Similarity=0.272 Sum_probs=33.3
Q ss_pred HHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeeeeccCcccccccCCCccCCCCCCCCCcEEEEc
Q psy11941 53 LEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTIN 132 (313)
Q Consensus 53 i~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~I~ 132 (313)
++.+.+.+.|+|++.| +...+.+.+..+.+.++ +.++|++.-|
T Consensus 24 ~~~~~~~GtD~i~vGG----s~gvt~~~~~~~v~~ik---------------------------------~~~~Pvvlfp 66 (228)
T 3vzx_A 24 LEILCESGTDAVIIGG----SDGVTEDNVLRMMSKVR---------------------------------RFLVPCVLEV 66 (228)
T ss_dssp HHHHHTSSCSEEEECC----CSCCCHHHHHHHHHHHT---------------------------------TSSSCEEEEC
T ss_pred HHHHHHcCCCEEEECC----cCCCCHHHHHHHHHHhh---------------------------------ccCCCEEEeC
Confidence 3334588999999999 22233345555555554 3468999999
Q ss_pred CCCCCCC
Q psy11941 133 GNHDDPS 139 (313)
Q Consensus 133 GNHD~~~ 139 (313)
||++.-.
T Consensus 67 ~~~~~v~ 73 (228)
T 3vzx_A 67 SAIEAIV 73 (228)
T ss_dssp SCGGGCC
T ss_pred CCHHHcc
Confidence 9986544
No 61
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=55.47 E-value=35 Score=31.23 Aligned_cols=80 Identities=10% Similarity=0.161 Sum_probs=38.3
Q ss_pred hcccCCCCCeEEEEEeeccccCcccCC---------------------c--CccchhHHHHHHHHHHHHhcCCCEEEEcC
Q psy11941 12 EEVEYDDRNTIRIMIASDIHLGYLETD---------------------R--ERGNDSFVSFEEILEQALDQEVDMVLLGG 68 (313)
Q Consensus 12 ~~~~~~~~~~mkilh~SD~Hlg~~~~~---------------------~--~~~~~~~~~l~~ii~~~~~~~~d~vv~~G 68 (313)
++.-+..-+..+-..++|+|+.+..+. + .-+.=-+..++++++...+.++|.+++.|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~alvTPF~~dg~ID~~al~~lv~~li~~Gv~Gl~v~G 101 (360)
T 4dpp_A 22 ENLYFQGIDPFTAAVVPNFHLPMRSLEVKNRTNTDDIKALRVITAIKTPYLPDGRFDLEAYDDLVNIQIQNGAEGVIVGG 101 (360)
T ss_dssp --------------------------------CHHHHHTCCEEEECCCCBCTTSSBCHHHHHHHHHHHHHTTCCEEEESS
T ss_pred cceeeeccchhhhhhccccccccCCHhHhhccChhhcccCCeEEEEeCcCCCCCCcCHHHHHHHHHHHHHcCCCEEEecc
Confidence 343445556677889999999853221 0 01122345789999999999999999999
Q ss_pred CcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 69 DLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 69 Dlf~~~~~~~~~~~~~~~~l~~l 91 (313)
=.=....-+.++..++.+...+.
T Consensus 102 TTGE~~~Ls~eEr~~vi~~~ve~ 124 (360)
T 4dpp_A 102 TTGEGQLMSWDEHIMLIGHTVNC 124 (360)
T ss_dssp TTTTGGGSCHHHHHHHHHHHHHH
T ss_pred cccChhhCCHHHHHHHHHHHHHH
Confidence 77666666777887777776653
No 62
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=55.18 E-value=21 Score=29.06 Aligned_cols=42 Identities=21% Similarity=0.244 Sum_probs=25.6
Q ss_pred chhHHHHHHHHHHHHhc-CCCEEEEcCCcCCC-CCCCHHHHHHH
Q psy11941 43 NDSFVSFEEILEQALDQ-EVDMVLLGGDLFHI-NKPSPTTLKKC 84 (313)
Q Consensus 43 ~~~~~~l~~ii~~~~~~-~~d~vv~~GDlf~~-~~~~~~~~~~~ 84 (313)
.|..+.+.+.++.+.++ ++|+||.+|=+--. .+...+++..+
T Consensus 63 ~Dd~~~I~~al~~a~~~~~~DlVittGG~s~g~~D~t~eal~~~ 106 (178)
T 2pjk_A 63 PDDKIKILKAFTDALSIDEVDVIISTGGTGYSPTDITVETIRKL 106 (178)
T ss_dssp CSCHHHHHHHHHHHHTCTTCCEEEEESCCSSSTTCCHHHHHGGG
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcchHHHHHHH
Confidence 34455677777776665 69999999866322 23334555443
No 63
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=54.51 E-value=29 Score=27.81 Aligned_cols=38 Identities=24% Similarity=0.362 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCcCCC-CCCCHHHHHHH
Q psy11941 47 VSFEEILEQALDQEVDMVLLGGDLFHI-NKPSPTTLKKC 84 (313)
Q Consensus 47 ~~l~~ii~~~~~~~~d~vv~~GDlf~~-~~~~~~~~~~~ 84 (313)
+.+.+.++.+.+.++|+||.+|=+--. .+...+.+..+
T Consensus 53 ~~i~~al~~a~~~~~DlVittGG~s~g~~D~t~eal~~~ 91 (164)
T 3pzy_A 53 SPVGEALRKAIDDDVDVILTSGGTGIAPTDSTPDQTVAV 91 (164)
T ss_dssp HHHHHHHHHHHHTTCSEEEEESCCSSSTTCCHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCCCCCCccHHHHHHHH
Confidence 566777777666689999999876433 23334555544
No 64
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=49.05 E-value=49 Score=30.27 Aligned_cols=49 Identities=12% Similarity=0.065 Sum_probs=35.8
Q ss_pred cchhHHHHHHHHHHHHhcCCCEEEE-cC------CcCCCCCCCHHHHHHHHHHHHH
Q psy11941 42 GNDSFVSFEEILEQALDQEVDMVLL-GG------DLFHINKPSPTTLKKCLETLRK 90 (313)
Q Consensus 42 ~~~~~~~l~~ii~~~~~~~~d~vv~-~G------Dlf~~~~~~~~~~~~~~~~l~~ 90 (313)
..+.+.+|++++..+.+.+||+||+ +| |=.-.-..+.+.+.++.+.+++
T Consensus 273 d~~yl~~~~~~l~~l~~f~PdlIvvsaG~Da~~~Dplg~l~lt~~~~~~~~~~l~~ 328 (362)
T 3men_A 273 EAAFFERVDDALRELRRFAPDALVLSLGFDVYRDDPQSQVAVTTDGFGRLGHLIGA 328 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSEEEEEECSTTBTTCTTCCBCBCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEEECcccCcCCCCCCCccCCHHHHHHHHHHHHh
Confidence 3456778999998888889999998 33 3332334567888888888874
No 65
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=40.02 E-value=51 Score=29.86 Aligned_cols=49 Identities=10% Similarity=0.009 Sum_probs=34.8
Q ss_pred cchhHHHHHHHHHHHHhcCCCEEEE-cC------CcCCCCCCCHHHHHHHHHHHHH
Q psy11941 42 GNDSFVSFEEILEQALDQEVDMVLL-GG------DLFHINKPSPTTLKKCLETLRK 90 (313)
Q Consensus 42 ~~~~~~~l~~ii~~~~~~~~d~vv~-~G------Dlf~~~~~~~~~~~~~~~~l~~ 90 (313)
..+.+.+|++++..+.+.+||+||+ +| |=.-.-..+.+.+.++.+.+++
T Consensus 255 d~~y~~~~~~~l~~l~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~ 310 (341)
T 3q9b_A 255 YSVWGEALTDSLKRIAAFGAEAIVVSLGVDTFEQDPISFFKLTSPDYITMGRTIAA 310 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCEEEEECCTTBTTCTTCCCBBCTTHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCCCCCCccCCHHHHHHHHHHHHH
Confidence 3556778999998888889999988 43 3222223355788888888874
No 66
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=39.48 E-value=1e+02 Score=23.40 Aligned_cols=19 Identities=42% Similarity=0.760 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCCCEEEEc
Q psy11941 49 FEEILEQALDQEVDMVLLG 67 (313)
Q Consensus 49 l~~ii~~~~~~~~d~vv~~ 67 (313)
.+.+++.+++.++|+||+.
T Consensus 109 ~~~I~~~a~~~~~dlIV~G 127 (162)
T 1mjh_A 109 HEEIVKIAEDEGVDIIIMG 127 (162)
T ss_dssp HHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEc
Confidence 3456677777788877764
No 67
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=37.42 E-value=1.1e+02 Score=28.22 Aligned_cols=48 Identities=21% Similarity=0.322 Sum_probs=33.7
Q ss_pred chhHHHHHHHHHHH-HhcCCCEEEE-cC------CcCCCCCCCHHHHHHHHHHHHH
Q psy11941 43 NDSFVSFEEILEQA-LDQEVDMVLL-GG------DLFHINKPSPTTLKKCLETLRK 90 (313)
Q Consensus 43 ~~~~~~l~~ii~~~-~~~~~d~vv~-~G------Dlf~~~~~~~~~~~~~~~~l~~ 90 (313)
.+.+.+|++++..+ .+.+||+||+ +| |=.-.-..+.+.+.++.+.+.+
T Consensus 238 ~~y~~~~~~~l~p~~~~F~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~ 293 (388)
T 3ew8_A 238 EKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQ 293 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSEEEEECCSTTBTTCTTCCCCBCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEECCccCCCCCCCCCCcCCHHHHHHHHHHHHh
Confidence 55667888877654 6789999988 44 4444445567788888887763
No 68
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=37.13 E-value=51 Score=24.45 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCCCEEEEcCC
Q psy11941 49 FEEILEQALDQEVDMVLLGGD 69 (313)
Q Consensus 49 l~~ii~~~~~~~~d~vv~~GD 69 (313)
.+.+++.+++.++|+||+.--
T Consensus 91 ~~~I~~~a~~~~~dliV~G~~ 111 (141)
T 1jmv_A 91 GQVLSDAIEQYDVDLLVTGHH 111 (141)
T ss_dssp HHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHHHhcCCCEEEEeCC
Confidence 467888888899997777543
No 69
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=36.43 E-value=30 Score=26.07 Aligned_cols=56 Identities=11% Similarity=0.086 Sum_probs=29.9
Q ss_pred CCCCeEEEEEeeccccCccc-------CCcCccchhHHHHHHHHHHHHhcCCCEEEEcCCcCC
Q psy11941 17 DDRNTIRIMIASDIHLGYLE-------TDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFH 72 (313)
Q Consensus 17 ~~~~~mkilh~SD~Hlg~~~-------~~~~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~ 72 (313)
....||||+++.|-..-... .+....-......+++++.+.+..+|+||+--++-+
T Consensus 16 ~~~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~ 78 (150)
T 4e7p_A 16 PRGSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEMPV 78 (150)
T ss_dssp ----CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSSCSS
T ss_pred CCCCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCCCCC
Confidence 34558999999885432210 010001111223456777778889998888655543
No 70
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine tetraphosphatase, monomer, PSI- 2, protein structure initiative, nysgrc; 2.05A {Trypanosoma brucei}
Probab=35.12 E-value=29 Score=29.81 Aligned_cols=42 Identities=5% Similarity=-0.043 Sum_probs=26.8
Q ss_pred cccEEEeCCccCccccCCCCCCC--cccEEecCCCceeccccCccccccEEEEEEeCC
Q psy11941 242 FFHFILWGHEHECRIKPEYNTKQ--RFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQ 297 (313)
Q Consensus 242 ~~d~v~~GH~H~~~~~~~~~~~~--~~~i~~~GS~~~~~~~e~~~~~~g~~vv~~~~~ 297 (313)
+.++|+.||+|...... .+ +...+.+|+.. ...+..+.++++
T Consensus 196 g~~~vvfGHt~~~~~~~----~~~~~~i~IDtG~~~----------gG~Lt~l~l~~~ 239 (262)
T 2qjc_A 196 GPETVVFGHDARRGLQE----QYKPLAIGLDSRCVY----------GGRLSAAVFPGG 239 (262)
T ss_dssp CSSEEEECCCGGGCCBC----TTTTTEEECCCBGGG----------TSEEEEEEETTT
T ss_pred CCCEEEECCCccccccc----cCCCCEEEeeCcccc----------CCeeEEEEEcCC
Confidence 46899999999875432 23 45567787732 123566666654
No 71
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=33.76 E-value=1.3e+02 Score=21.52 Aligned_cols=21 Identities=10% Similarity=0.222 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCCCEEEEcCC
Q psy11941 49 FEEILEQALDQEVDMVLLGGD 69 (313)
Q Consensus 49 l~~ii~~~~~~~~d~vv~~GD 69 (313)
++++.+.+++..+.+||++.|
T Consensus 20 ~~~v~kai~~gka~lViiA~D 40 (99)
T 3j21_Z 20 SNETIRLAKTGGAKLIIVAKN 40 (99)
T ss_dssp HHHHHHHHHHTCCSEEEEECC
T ss_pred HHHHHHHHHcCCccEEEEeCC
Confidence 356777788889999999999
No 72
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=32.80 E-value=1.3e+02 Score=25.99 Aligned_cols=71 Identities=28% Similarity=0.359 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeeeeccCcccccccCCCccCCCCCC
Q psy11941 44 DSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLN 123 (313)
Q Consensus 44 ~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (313)
+...+...+++.+++.++|++|+.+ +++....-..+.+.|. .
T Consensus 48 ~~~~~~~~~~~~~~~~~pDfvI~is-----PN~a~PGP~~ARE~l~---------------------------------~ 89 (283)
T 1qv9_A 48 CVEAAVEMALDIAEDFEPDFIVYGG-----PNPAAPGPSKAREMLA---------------------------------D 89 (283)
T ss_dssp HHHHHHHHHHHHHHHHCCSEEEEEC-----SCTTSHHHHHHHHHHH---------------------------------T
T ss_pred HHHHHHHHhhhhhhhcCCCEEEEEC-----CCCCCCCchHHHHHHH---------------------------------h
Confidence 4445566777888999999999875 3333345566666776 5
Q ss_pred CCCcEEEEcCCCCCCCCCCcCchHHHHhhCCCeeEe
Q psy11941 124 ISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYF 159 (313)
Q Consensus 124 ~~~pv~~I~GNHD~~~~~~~~~~~~~l~~~~~~~~~ 159 (313)
.++|.++| | |-++.. .-+.++..|+-+++
T Consensus 90 ~~iP~IvI-~--D~p~~K----~kd~l~~~g~GYIi 118 (283)
T 1qv9_A 90 SEYPAVII-G--DAPGLK----VKDEMEEQGLGYIL 118 (283)
T ss_dssp SSSCEEEE-E--EGGGGG----GHHHHHHTTCEEEE
T ss_pred CCCCEEEE-c--CCcchh----hHHHHHhcCCcEEE
Confidence 68999998 3 554421 33667777765443
No 73
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=30.82 E-value=2e+02 Score=25.19 Aligned_cols=46 Identities=15% Similarity=0.198 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 46 FVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 46 ~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
+..++++++...+.++|.|++.|=.=....-+.++..++.+...+.
T Consensus 36 ~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~ 81 (304)
T 3cpr_A 36 IAAGREVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREE 81 (304)
T ss_dssp HHHHHHHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHH
Confidence 3568899999999999999999987777777778888888877754
No 74
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=29.87 E-value=55 Score=24.61 Aligned_cols=51 Identities=10% Similarity=0.094 Sum_probs=28.4
Q ss_pred CeEEEEEeecccc--CcccCCc-----CccchhHHHHHHHHHHHHhcCCCEEEEcCCcCCCC
Q psy11941 20 NTIRIMIASDIHL--GYLETDR-----ERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHIN 74 (313)
Q Consensus 20 ~~mkilh~SD~Hl--g~~~~~~-----~~~~~~~~~l~~ii~~~~~~~~d~vv~~GDlf~~~ 74 (313)
++|||..++|--. |....+- .-.++..++|+++ .+.++..|+++=++.+.-
T Consensus 1 m~mKiaVIGD~Dtv~GFrLaGie~~~v~~~ee~~~~~~~l----~~~digIIlIte~ia~~i 58 (115)
T 3aon_B 1 MTYKIGVVGDKDSVSPFRLFGFDVQHGTTKTEIRKTIDEM----AKNEYGVIYITEQCANLV 58 (115)
T ss_dssp CEEEEEEESCHHHHGGGGGGTCEEECCCSHHHHHHHHHHH----HHTTEEEEEEEHHHHTTC
T ss_pred CceEEEEEECHHHHHHHHHcCCeEEEeCCHHHHHHHHHHH----HhcCceEEEEeHHHHHHh
Confidence 3689999999542 2222111 1112233333333 333889999998887653
No 75
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=29.78 E-value=85 Score=28.50 Aligned_cols=28 Identities=25% Similarity=0.175 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEcCCcCC
Q psy11941 45 SFVSFEEILEQALDQEVDMVLLGGDLFH 72 (313)
Q Consensus 45 ~~~~l~~ii~~~~~~~~d~vv~~GDlf~ 72 (313)
....+.++.+..++.+||+|++.||.+.
T Consensus 79 ~~~~~~~l~~~l~~~kPD~Vlv~gd~~~ 106 (385)
T 4hwg_A 79 IGLVIEKVDEVLEKEKPDAVLFYGDTNS 106 (385)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESCSGG
T ss_pred HHHHHHHHHHHHHhcCCcEEEEECCchH
Confidence 3356677777788899999999999764
No 76
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=29.00 E-value=1.7e+02 Score=25.54 Aligned_cols=46 Identities=9% Similarity=0.141 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 46 FVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 46 ~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
+..++++++...+.++|.|++.|=.=....-+.++..++.+...+.
T Consensus 32 ~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~ 77 (301)
T 1xky_A 32 FAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSV 77 (301)
T ss_dssp HHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHH
Confidence 4568899999999999999999987666667778888888877654
No 77
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=28.78 E-value=1.1e+02 Score=22.46 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=18.3
Q ss_pred HHHHHHHHHhcCCCEEEEcCCc
Q psy11941 49 FEEILEQALDQEVDMVLLGGDL 70 (313)
Q Consensus 49 l~~ii~~~~~~~~d~vv~~GDl 70 (313)
++++.+.+++..+.+||++.|.
T Consensus 26 ~~~v~kai~~gka~lViiA~D~ 47 (110)
T 3cpq_A 26 SKRTIKFVKHGEGKLVVLAGNI 47 (110)
T ss_dssp HHHHHHHHHTTCCSEEEECTTC
T ss_pred HHHHHHHHHcCCceEEEEeCCC
Confidence 3467777778899999999998
No 78
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=28.74 E-value=1.8e+02 Score=22.06 Aligned_cols=19 Identities=26% Similarity=0.620 Sum_probs=12.3
Q ss_pred HHHHHHHHHhcCCCEEEEc
Q psy11941 49 FEEILEQALDQEVDMVLLG 67 (313)
Q Consensus 49 l~~ii~~~~~~~~d~vv~~ 67 (313)
.+.+++.+++.++|+||+.
T Consensus 106 ~~~I~~~a~~~~~DlIV~G 124 (170)
T 2dum_A 106 WDEIVKVAEEENVSLIILP 124 (170)
T ss_dssp HHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEC
Confidence 3456666777777766663
No 79
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=28.60 E-value=1.5e+02 Score=21.18 Aligned_cols=21 Identities=5% Similarity=0.139 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCCCEEEEcCC
Q psy11941 49 FEEILEQALDQEVDMVLLGGD 69 (313)
Q Consensus 49 l~~ii~~~~~~~~d~vv~~GD 69 (313)
++++.+.+++..+.+||++.|
T Consensus 21 ~~~v~kai~~gka~lViiA~D 41 (101)
T 1w41_A 21 ARKSIQYAKMGGAKLIIVARN 41 (101)
T ss_dssp HHHHHHHHHHTCCSEEEEETT
T ss_pred HHHHHHHHHcCCCcEEEEeCC
Confidence 356777778889999999999
No 80
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=28.41 E-value=1.4e+02 Score=21.77 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhcCCCEEEEc
Q psy11941 48 SFEEILEQALDQEVDMVLLG 67 (313)
Q Consensus 48 ~l~~ii~~~~~~~~d~vv~~ 67 (313)
..+.+++.+++.++|+||+.
T Consensus 94 ~~~~I~~~a~~~~~dliV~G 113 (143)
T 3fdx_A 94 PKDKILALAKSLPADLVIIA 113 (143)
T ss_dssp HHHHHHHHHHHTTCSEEEEE
T ss_pred hHHHHHHHHHHhCCCEEEEe
Confidence 45678888888899987774
No 81
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_H
Probab=28.37 E-value=1.1e+02 Score=26.53 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHH
Q psy11941 49 FEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLR 89 (313)
Q Consensus 49 l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~ 89 (313)
+.++...+.+..+.+||+++|.- | .++..++..|-
T Consensus 132 vneVTklVE~kKAqLVVIA~DVd----P--iElV~fLPaLC 166 (258)
T 3iz5_H 132 LNHVTYLIEQSKAQLVVIAHDVD----P--IELVVWLPALC 166 (258)
T ss_dssp HHHHHHHHHTTCEEEEEEESCCS----S--THHHHHHHHHH
T ss_pred cHHHHHHHHcCcceEEEEeCCCC----h--HHHHhHHHHHH
Confidence 45777777888999999999984 3 34555555555
No 82
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=28.34 E-value=85 Score=23.40 Aligned_cols=19 Identities=37% Similarity=0.643 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcCCCEEEEc
Q psy11941 49 FEEILEQALDQEVDMVLLG 67 (313)
Q Consensus 49 l~~ii~~~~~~~~d~vv~~ 67 (313)
.+.+++.+++.++|+||+.
T Consensus 98 ~~~I~~~a~~~~~dliV~G 116 (150)
T 3tnj_A 98 REEIIRIAEQENVDLIVVG 116 (150)
T ss_dssp HHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEe
Confidence 4577778888888877774
No 83
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=27.91 E-value=2e+02 Score=25.19 Aligned_cols=46 Identities=11% Similarity=0.090 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 46 FVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 46 ~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
+..+++.++...+.++|.|++.|=.=....-+.++..++.+...+.
T Consensus 35 ~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~ 80 (304)
T 3l21_A 35 TATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEA 80 (304)
T ss_dssp HHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHH
Confidence 4568899999999999999999877666667778888888877754
No 84
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=27.63 E-value=1.8e+02 Score=25.49 Aligned_cols=46 Identities=17% Similarity=0.212 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 46 FVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 46 ~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
+..++++++...+.++|.|++.|=.=....-+.++..++.+...+.
T Consensus 31 ~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~ 76 (303)
T 2wkj_A 31 KASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEE 76 (303)
T ss_dssp HHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHH
Confidence 4568899999999999999999987666667778888888877754
No 85
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=27.57 E-value=1.8e+02 Score=26.53 Aligned_cols=49 Identities=14% Similarity=0.118 Sum_probs=33.5
Q ss_pred cchhHHHHHHHHHH-HHhcCCCEEEE-c------CCcCCCCCCCHHHHHHHHHHHHH
Q psy11941 42 GNDSFVSFEEILEQ-ALDQEVDMVLL-G------GDLFHINKPSPTTLKKCLETLRK 90 (313)
Q Consensus 42 ~~~~~~~l~~ii~~-~~~~~~d~vv~-~------GDlf~~~~~~~~~~~~~~~~l~~ 90 (313)
..+.+.+|++++.. +.+.+||+||+ + ||=.-.-..+.+.+.++.+.+++
T Consensus 229 D~~yl~~~~~~l~p~~~~f~Pd~IvvsaG~Da~~~DpLg~l~Lt~~g~~~~~~~l~~ 285 (376)
T 4a69_A 229 DQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKS 285 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEECCGGGBTTCSSCCCBBCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEeCcccCCCCCcccCeecCHHHHHHHHHHHHH
Confidence 34567788887764 56789999987 3 34333334567788888888773
No 86
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=27.19 E-value=1.9e+02 Score=25.11 Aligned_cols=46 Identities=11% Similarity=0.164 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 46 FVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 46 ~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
+..+++.++...+.++|.+++.|=.=....-+.++..++.+...+.
T Consensus 27 ~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~ 72 (297)
T 3flu_A 27 YEQLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKH 72 (297)
T ss_dssp HHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHH
Confidence 3568899999999999999999977666667778888888877654
No 87
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=26.31 E-value=1e+02 Score=25.87 Aligned_cols=49 Identities=12% Similarity=0.077 Sum_probs=34.8
Q ss_pred cchhHHHHHHHHHHHHhcCCCEEEE-cCCcCCCCCCCHHHHHHHHHHHHHhc
Q psy11941 42 GNDSFVSFEEILEQALDQEVDMVLL-GGDLFHINKPSPTTLKKCLETLRKYC 92 (313)
Q Consensus 42 ~~~~~~~l~~ii~~~~~~~~d~vv~-~GDlf~~~~~~~~~~~~~~~~l~~l~ 92 (313)
.....+.++++++.|.+.++..|++ +| ........+.++.+.+.|+++.
T Consensus 88 r~~~~~~~~~~i~~A~~lGa~~v~~~~g--~~~~~~~~~~~~~~~~~l~~l~ 137 (269)
T 3ngf_A 88 EQEFRDNVDIALHYALALDCRTLHAMSG--ITEGLDRKACEETFIENFRYAA 137 (269)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEECCBC--BCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEccC--CCCCCCHHHHHHHHHHHHHHHH
Confidence 4556678999999999999998877 77 2222233456777777777654
No 88
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=26.30 E-value=2e+02 Score=24.93 Aligned_cols=46 Identities=20% Similarity=0.174 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 46 FVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 46 ~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
+..++++++...+.++|.+++.|=.=....-+.++..++.+...+.
T Consensus 20 ~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~ 65 (289)
T 2yxg_A 20 FDGLEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDV 65 (289)
T ss_dssp HHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHH
Confidence 3468899999889999999999987776667778888888877654
No 89
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=26.16 E-value=1.9e+02 Score=25.08 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 46 FVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 46 ~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
+..++++++...+.++|.+++.|=.=....-+.++..++.+...+.
T Consensus 20 ~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~ 65 (294)
T 2ehh_A 20 YEALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKR 65 (294)
T ss_dssp HHHHHHHHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHH
Confidence 3468899999999999999999987666667778888888877754
No 90
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=26.10 E-value=1.9e+02 Score=25.11 Aligned_cols=46 Identities=4% Similarity=0.001 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 46 FVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 46 ~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
+..++++++...+.++|.+++.|=.=....-+.++..++.+...+.
T Consensus 21 ~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~ 66 (292)
T 2ojp_A 21 RASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDL 66 (292)
T ss_dssp HHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHH
Confidence 3468899999889999999999987777667778888888877654
No 91
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=25.66 E-value=2.4e+02 Score=25.66 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=32.6
Q ss_pred chhHHHHHHHHH-HHHhcCCCEEEE-cC------CcCCCCCCCHHHHHHHHHHHHH
Q psy11941 43 NDSFVSFEEILE-QALDQEVDMVLL-GG------DLFHINKPSPTTLKKCLETLRK 90 (313)
Q Consensus 43 ~~~~~~l~~ii~-~~~~~~~d~vv~-~G------Dlf~~~~~~~~~~~~~~~~l~~ 90 (313)
.+...+|++++. .+.+.+||+||+ +| |=.-.-..+.+.+.++.+.+++
T Consensus 229 ~~y~~~~~~~~~~~~~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~g~~~~~~~~~~ 284 (367)
T 3max_A 229 ESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKT 284 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSEEEEECCGGGBTTCSSCCCCBCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEECCccCcCCCCCCCeeeCHHHHHHHHHHHHh
Confidence 456678887775 456789999988 33 3333334567788888888773
No 92
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=25.52 E-value=1.5e+02 Score=26.98 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEcCCcC
Q psy11941 45 SFVSFEEILEQALDQEVDMVLLGGDLF 71 (313)
Q Consensus 45 ~~~~l~~ii~~~~~~~~d~vv~~GDlf 71 (313)
....+.++.+..++.+||+|++.||.+
T Consensus 99 ~~~~~~~l~~~l~~~kPD~Vi~~gd~~ 125 (403)
T 3ot5_A 99 TSRVMNGINEVIAAENPDIVLVHGDTT 125 (403)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEETTCH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCch
Confidence 345677777888899999999999864
No 93
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=25.50 E-value=2e+02 Score=20.93 Aligned_cols=19 Identities=32% Similarity=0.623 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCCCEEEEc
Q psy11941 49 FEEILEQALDQEVDMVLLG 67 (313)
Q Consensus 49 l~~ii~~~~~~~~d~vv~~ 67 (313)
.+.+++.+++.++|+||+.
T Consensus 88 ~~~I~~~a~~~~~dliV~G 106 (137)
T 2z08_A 88 AEAILQAARAEKADLIVMG 106 (137)
T ss_dssp HHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEC
Confidence 4567777888888887774
No 94
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=25.46 E-value=1.9e+02 Score=25.14 Aligned_cols=46 Identities=13% Similarity=-0.003 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 46 FVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 46 ~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
+..++++++...+.++|.+++.|=.=....-+.++..++.+...+.
T Consensus 23 ~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~ 68 (294)
T 3b4u_A 23 IDAMIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAA 68 (294)
T ss_dssp HHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHH
Confidence 3468899999899999999999987666667778888888887753
No 95
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=25.30 E-value=1.8e+02 Score=25.41 Aligned_cols=46 Identities=13% Similarity=0.175 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 46 FVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 46 ~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
+..++++++...+.++|.|++.|=.=....-+.++..++.+...+.
T Consensus 32 ~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~ 77 (306)
T 1o5k_A 32 LESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEI 77 (306)
T ss_dssp HHHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHH
Confidence 4568899999999999999999987666667778888888877754
No 96
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=24.82 E-value=1.3e+02 Score=22.44 Aligned_cols=23 Identities=22% Similarity=0.533 Sum_probs=19.0
Q ss_pred HHHHHHHHhcCCCEEEEcCCcCC
Q psy11941 50 EEILEQALDQEVDMVLLGGDLFH 72 (313)
Q Consensus 50 ~~ii~~~~~~~~d~vv~~GDlf~ 72 (313)
.+++..+++..+.+||+++|.-.
T Consensus 26 ~~v~kai~~gkakLViiA~D~~~ 48 (121)
T 2lbw_A 26 KEVVKALRKGEKGLVVIAGDIWP 48 (121)
T ss_dssp HHHHHHHHHSCCCEEEECTTCSC
T ss_pred HHHHHHHHcCCceEEEEeCCCCH
Confidence 46777778889999999999853
No 97
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=24.78 E-value=1.9e+02 Score=25.06 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 46 FVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 46 ~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
+..++++++...+.++|.+++.|=.=....-+.++..++.+...+.
T Consensus 21 ~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~ 66 (291)
T 3a5f_A 21 FDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDK 66 (291)
T ss_dssp HHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHH
Confidence 3468899999889999999999977666666777888888877654
No 98
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=24.55 E-value=1.8e+02 Score=25.06 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=19.3
Q ss_pred HHHHHHHHHhcCCCEEEEcCCcC
Q psy11941 49 FEEILEQALDQEVDMVLLGGDLF 71 (313)
Q Consensus 49 l~~ii~~~~~~~~d~vv~~GDlf 71 (313)
+.++...+++..+.+||+++|.-
T Consensus 129 vneVtKaIekgKAqLVVIA~Dvd 151 (255)
T 4a17_F 129 LNHITTLIENKQAKLVVIAHDVD 151 (255)
T ss_dssp HHHHHHHHHTSCCSEEEEESCCS
T ss_pred hHHHHHHHHcCCceEEEEeCCCC
Confidence 45677788889999999999984
No 99
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*
Probab=24.39 E-value=1.5e+02 Score=27.39 Aligned_cols=49 Identities=18% Similarity=0.217 Sum_probs=33.5
Q ss_pred chhHHHHHHHHHH-HHhcCCCEEEE-cC-Cc-------CCCCCCCHHHHHHHHHHHHHh
Q psy11941 43 NDSFVSFEEILEQ-ALDQEVDMVLL-GG-DL-------FHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 43 ~~~~~~l~~ii~~-~~~~~~d~vv~-~G-Dl-------f~~~~~~~~~~~~~~~~l~~l 91 (313)
.+.+.+|++++.. +.+.+||+||+ +| |. .-.-..+.+.+..+.+.+.++
T Consensus 261 ~~y~~~~~~~v~p~~~~f~PdlivvsaG~Da~~~d~D~lg~~~lt~~~~~~~~~~l~~~ 319 (413)
T 2vqm_A 261 AEYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHPTPLGGYNLSARCFGYLTKQLMGL 319 (413)
T ss_dssp HHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBSSCTTTTCCCCBCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCChhhcCCCCCCCCCcccCHHHHHHHHHHHHHh
Confidence 4566788887754 45679999988 54 32 222345677888888888754
No 100
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=24.34 E-value=1.5e+02 Score=25.99 Aligned_cols=57 Identities=14% Similarity=0.095 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeeeeccCcccccccCCCccCCCCCCCCCc
Q psy11941 48 SFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLP 127 (313)
Q Consensus 48 ~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 127 (313)
.+.+.++.+.+.+.|+|++. ..+-.+ -.+.+..+++.+++. ..+|
T Consensus 54 ~~~~~~~~~~~sGtDai~VG--S~~vt~-~~~~~~~~v~~ik~~--------------------------------~~lP 98 (286)
T 3vk5_A 54 EAVEKAAELTRLGFAAVLLA--STDYES-FESHMEPYVAAVKAA--------------------------------TPLP 98 (286)
T ss_dssp HHHHHHHHHHHTTCSCEEEE--CSCCSS-HHHHHHHHHHHHHHH--------------------------------CSSC
T ss_pred HHHHHHHHHHhcCCCEEEEc--cCCCCc-chHHHHHHHHHHHHh--------------------------------CCCC
Confidence 34456777778899987766 322210 035677778888752 3689
Q ss_pred EEE-Ec---CCCCCCC
Q psy11941 128 VFT-IN---GNHDDPS 139 (313)
Q Consensus 128 v~~-I~---GNHD~~~ 139 (313)
++. -| ||.+.-.
T Consensus 99 vil~fPP~~g~~~~i~ 114 (286)
T 3vk5_A 99 VVLHFPPRPGAGFPVV 114 (286)
T ss_dssp EEEECCCBTTTBSCCC
T ss_pred EEEECCCCCCCccccc
Confidence 999 99 9997765
No 101
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=24.30 E-value=2e+02 Score=25.00 Aligned_cols=45 Identities=9% Similarity=0.145 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 47 VSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 47 ~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
..+++.++...+.++|.|++.|=.=....-+.++..++.+...+.
T Consensus 23 ~~l~~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~ 67 (292)
T 3daq_A 23 EALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDL 67 (292)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHH
Confidence 468899999999999999999876666666778888888877654
No 102
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=24.16 E-value=1.6e+02 Score=25.86 Aligned_cols=46 Identities=9% Similarity=0.005 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 46 FVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 46 ~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
+..+++.++...+.++|.|++.|=.=....-+.++..++.+...+.
T Consensus 28 ~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~ 73 (309)
T 3fkr_A 28 LASQKRAVDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEH 73 (309)
T ss_dssp HHHHHHHHHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEECccccCcccCCHHHHHHHHHHHHHH
Confidence 4568899999999999999999876666666778888888877654
No 103
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=24.07 E-value=2.2e+02 Score=24.67 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHh-cCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 46 FVSFEEILEQALD-QEVDMVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 46 ~~~l~~ii~~~~~-~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
+..++++++...+ .++|.|++.|=.=....-+.++..++.+...+.
T Consensus 23 ~~~l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~ 69 (293)
T 1f6k_A 23 EKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDE 69 (293)
T ss_dssp HHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHH
Confidence 3468899999888 999999999976666666777888888777654
No 104
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=23.96 E-value=1.1e+02 Score=21.17 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=18.9
Q ss_pred HHHHHHHHHhcCCCEEEEcCCcC
Q psy11941 49 FEEILEQALDQEVDMVLLGGDLF 71 (313)
Q Consensus 49 l~~ii~~~~~~~~d~vv~~GDlf 71 (313)
..+++..+++..+.+|+++.|.-
T Consensus 16 ~~~v~kai~~gkaklViiA~D~~ 38 (82)
T 3v7e_A 16 TKQTVKALKRGSVKEVVVAKDAD 38 (82)
T ss_dssp HHHHHHHHTTTCEEEEEEETTSC
T ss_pred HHHHHHHHHcCCeeEEEEeCCCC
Confidence 34677778888999999999984
No 105
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=23.87 E-value=1.9e+02 Score=25.82 Aligned_cols=46 Identities=9% Similarity=0.003 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 46 FVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 46 ~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
+..++++++...+.++|.|++.|=.=....-+.++..++.+...+.
T Consensus 51 ~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~ 96 (343)
T 2v9d_A 51 KPGTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDH 96 (343)
T ss_dssp HHHHHHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHH
Confidence 3568899999999999999999987776667778888888877754
No 106
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=23.82 E-value=1.8e+02 Score=25.60 Aligned_cols=46 Identities=7% Similarity=0.086 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 46 FVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 46 ~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
+..+++.++...+.++|.+++.|=.=....-+.++..++.+...+.
T Consensus 43 ~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~ 88 (314)
T 3qze_A 43 WDSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQ 88 (314)
T ss_dssp HHHHHHHHHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHH
Confidence 4578899999999999999999877666666778888888877654
No 107
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=23.75 E-value=1.9e+02 Score=25.76 Aligned_cols=46 Identities=15% Similarity=0.120 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 46 FVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 46 ~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
+..++++++...+.++|.|++.|=.=....-+.++..++.+...+.
T Consensus 54 ~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~ 99 (332)
T 2r8w_A 54 IEAFSALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATI 99 (332)
T ss_dssp HHHHHHHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHH
Confidence 4568899999889999999999987776667778888888877754
No 108
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=23.53 E-value=2.5e+02 Score=23.69 Aligned_cols=50 Identities=22% Similarity=0.391 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeeeeccCcccccccCCCccCCCCCCCCCcEEE
Q psy11941 51 EILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFT 130 (313)
Q Consensus 51 ~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~ 130 (313)
++++.+.+.++|+|.+.| +... +++.+.+.++++. +..+|+++
T Consensus 24 ~~~~~l~~~GaD~IelG~----S~g~---t~~~~~~~v~~ir------------------------------~~~~Pivl 66 (234)
T 2f6u_A 24 EIIKAVADSGTDAVMISG----TQNV---TYEKARTLIEKVS------------------------------QYGLPIVV 66 (234)
T ss_dssp HHHHHHHTTTCSEEEECC----CTTC---CHHHHHHHHHHHT------------------------------TSCCCEEE
T ss_pred HHHHHHHHcCCCEEEECC----CCCC---CHHHHHHHHHHhc------------------------------CCCCCEEE
Confidence 345666788999999999 2222 3455666666553 23579999
Q ss_pred EcCCCCC
Q psy11941 131 INGNHDD 137 (313)
Q Consensus 131 I~GNHD~ 137 (313)
.+++.+.
T Consensus 67 ~~y~~n~ 73 (234)
T 2f6u_A 67 EPSDPSN 73 (234)
T ss_dssp CCSSCCC
T ss_pred ecCCcch
Confidence 8888543
No 109
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=23.36 E-value=2e+02 Score=25.37 Aligned_cols=46 Identities=13% Similarity=0.012 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 46 FVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 46 ~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
+..++++++...+.++|.|++.|=.=....-+.++..++.+...+.
T Consensus 31 ~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~ 76 (318)
T 3qfe_A 31 LASQERYYAYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKA 76 (318)
T ss_dssp HHHHHHHHHHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHH
Confidence 3568899999999999999999877666666778888888877754
No 110
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=23.24 E-value=2.3e+02 Score=24.51 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 46 FVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 46 ~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
+..+++.++...+.++|.+++.|=.=....-+.++..++.+...+.
T Consensus 21 ~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~ 66 (291)
T 3tak_A 21 WKSLEKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRV 66 (291)
T ss_dssp HHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHH
Confidence 3568899999899999999999977666666778888888877654
No 111
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=22.88 E-value=1.7e+02 Score=26.69 Aligned_cols=51 Identities=6% Similarity=0.137 Sum_probs=34.6
Q ss_pred cchhHHHHHH-HHHHHHhcCCCEEEE-cC------CcCCCCCCCHHHHHHHHHHHHHhc
Q psy11941 42 GNDSFVSFEE-ILEQALDQEVDMVLL-GG------DLFHINKPSPTTLKKCLETLRKYC 92 (313)
Q Consensus 42 ~~~~~~~l~~-ii~~~~~~~~d~vv~-~G------Dlf~~~~~~~~~~~~~~~~l~~l~ 92 (313)
..+.+.+|++ ++..+.+.+||+||+ +| |=.-.-..+.+.+.++.+.+.+++
T Consensus 238 d~~yl~~~~~~v~p~l~~f~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~a 296 (369)
T 1zz1_A 238 NAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCA 296 (369)
T ss_dssp HHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCTTCCCBBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEeCCccCCCCCCCCCcccCHHHHHHHHHHHHHHH
Confidence 3456678887 556677889999998 33 333233456788888888887664
No 112
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=22.80 E-value=1.9e+02 Score=25.33 Aligned_cols=46 Identities=11% Similarity=0.047 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 46 FVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 46 ~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
+..+++.++...+.++|.|++.|=.=....-+.++..++.+...+.
T Consensus 34 ~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~ 79 (307)
T 3s5o_A 34 YGKLEENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQA 79 (307)
T ss_dssp HHHHHHHHHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHH
Confidence 3468899999999999999999987766667778888888887753
No 113
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=22.39 E-value=1e+02 Score=23.09 Aligned_cols=23 Identities=13% Similarity=0.355 Sum_probs=18.9
Q ss_pred HHHHHHHHHhcCCCEEEEcCCcC
Q psy11941 49 FEEILEQALDQEVDMVLLGGDLF 71 (313)
Q Consensus 49 l~~ii~~~~~~~~d~vv~~GDlf 71 (313)
..++...+++..+.+||+++|.-
T Consensus 30 ~~~v~kaI~~gka~LVvIA~D~~ 52 (113)
T 3jyw_G 30 LNHVVALIENKKAKLVLIANDVD 52 (113)
T ss_dssp HHHHHHTTTTTCCSEEEECSCCS
T ss_pred HHHHHHHHHcCCceEEEEeCCCC
Confidence 34677777888999999999984
No 114
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=22.34 E-value=2.1e+02 Score=24.97 Aligned_cols=46 Identities=13% Similarity=0.242 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 46 FVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 46 ~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
+..+++.++...+.++|.+++.|=.=....-+.++..++.+...+.
T Consensus 27 ~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~ 72 (301)
T 3m5v_A 27 EQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVET 72 (301)
T ss_dssp HHHHHHHHHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHH
Confidence 3568899999999999999999977666667778888888877754
No 115
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=22.03 E-value=2.4e+02 Score=21.29 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=18.0
Q ss_pred HHHHHHHHhcCCCEEEEcCCcC
Q psy11941 50 EEILEQALDQEVDMVLLGGDLF 71 (313)
Q Consensus 50 ~~ii~~~~~~~~d~vv~~GDlf 71 (313)
.+++..+++..+.++|++.|.-
T Consensus 30 ~~v~Kai~~gka~LViiA~D~~ 51 (126)
T 2xzm_U 30 HEVLRTIEAKQALFVCVAEDCD 51 (126)
T ss_dssp HHHHHHHHHTCCSEEEEESSCC
T ss_pred HHHHHHHHcCCceEEEEeCCCC
Confidence 4566667788999999999984
No 116
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=21.80 E-value=2.2e+02 Score=21.04 Aligned_cols=21 Identities=10% Similarity=0.246 Sum_probs=18.0
Q ss_pred HHHHHHHHhcCCCEEEEcCCc
Q psy11941 50 EEILEQALDQEVDMVLLGGDL 70 (313)
Q Consensus 50 ~~ii~~~~~~~~d~vv~~GDl 70 (313)
+++++.+++..+.+||++.|.
T Consensus 32 ~~t~kai~~gkakLVilA~D~ 52 (112)
T 3iz5_f 32 KTVLKTLRSSLGKLIILANNC 52 (112)
T ss_dssp HHHHHHHHTTCCSEEEECSCC
T ss_pred HHHHHHHHcCCceEEEEeCCC
Confidence 467777888899999999997
No 117
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=21.71 E-value=2.2e+02 Score=20.39 Aligned_cols=45 Identities=18% Similarity=0.215 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHHhcCCCEEEEc----CCcCCCCCCCHHHHHHHHHHHHH
Q psy11941 44 DSFVSFEEILEQALDQEVDMVLLG----GDLFHINKPSPTTLKKCLETLRK 90 (313)
Q Consensus 44 ~~~~~l~~ii~~~~~~~~d~vv~~----GDlf~~~~~~~~~~~~~~~~l~~ 90 (313)
.....++++.+.+.+++++.||+. .|=..+ +..+..+.+.+.|++
T Consensus 35 ~~~~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~--~~~~~~~~f~~~L~~ 83 (98)
T 1iv0_A 35 TLEEDVEALLDFVRREGLGKLVVGLPLRTDLKES--AQAGKVLPLVEALRA 83 (98)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEEECCCCCCSSSC--CCSSTTHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEeeccCCCCCcC--HHHHHHHHHHHHHhc
Confidence 344567888888999999987765 233322 222345556666653
No 118
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=21.66 E-value=2e+02 Score=25.39 Aligned_cols=46 Identities=15% Similarity=0.045 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 46 FVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 46 ~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
+..++++++...+.++|.|++.|=.=....-+.++..++.+...+.
T Consensus 42 ~~~l~~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~ 87 (315)
T 3si9_A 42 EKAFCNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQ 87 (315)
T ss_dssp HHHHHHHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHH
Confidence 4578899999999999999999977666667778888888877654
No 119
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=21.63 E-value=1.6e+02 Score=23.10 Aligned_cols=39 Identities=18% Similarity=0.183 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHH
Q psy11941 48 SFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRK 90 (313)
Q Consensus 48 ~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~ 90 (313)
..+++++.+++.++|+|.++.=+.. ....+..+.+.|++
T Consensus 57 p~e~lv~aa~~~~~diV~lS~~~~~----~~~~~~~~i~~L~~ 95 (161)
T 2yxb_A 57 TPEQVAMAAVQEDVDVIGVSILNGA----HLHLMKRLMAKLRE 95 (161)
T ss_dssp CHHHHHHHHHHTTCSEEEEEESSSC----HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCEEEEEeechh----hHHHHHHHHHHHHh
Confidence 4678999999999999999876552 23567777777775
No 120
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=21.62 E-value=1.2e+02 Score=26.79 Aligned_cols=46 Identities=15% Similarity=0.305 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 46 FVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 46 ~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
+..+++.++...+.++|.|++.|=.=....-+.++..++.+...+.
T Consensus 32 ~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~ 77 (316)
T 3e96_A 32 WHHYKETVDRIVDNGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEY 77 (316)
T ss_dssp HHHHHHHHHHHHTTTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHH
Confidence 3578899999999999999999976666666777888888777654
No 121
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=21.50 E-value=1.6e+02 Score=21.78 Aligned_cols=51 Identities=22% Similarity=0.173 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHhccCCCceeeeeccCcccccccCCCccCCCCCCCCCcEE
Q psy11941 50 EEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVF 129 (313)
Q Consensus 50 ~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~ 129 (313)
+.+.+.+++.++|.++++-.. .+.+..+.+.+.+. ..++.+.
T Consensus 55 ~~l~~~~~~~~id~viia~~~-----~~~~~~~~i~~~l~---------------------------------~~gv~v~ 96 (141)
T 3nkl_A 55 KYLERLIKKHCISTVLLAVPS-----ASQVQKKVIIESLA---------------------------------KLHVEVL 96 (141)
T ss_dssp GGHHHHHHHHTCCEEEECCTT-----SCHHHHHHHHHHHH---------------------------------TTTCEEE
T ss_pred HHHHHHHHHCCCCEEEEeCCC-----CCHHHHHHHHHHHH---------------------------------HcCCeEE
Confidence 345566677889999886332 12245666666665 4578899
Q ss_pred EEcCCCCCC
Q psy11941 130 TINGNHDDP 138 (313)
Q Consensus 130 ~I~GNHD~~ 138 (313)
++|.-.+..
T Consensus 97 ~vP~~~~~~ 105 (141)
T 3nkl_A 97 TIPNLDDLV 105 (141)
T ss_dssp ECCCHHHHH
T ss_pred ECCCHHHHh
Confidence 998765544
No 122
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=21.47 E-value=1.8e+02 Score=26.18 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEcCCcC
Q psy11941 45 SFVSFEEILEQALDQEVDMVLLGGDLF 71 (313)
Q Consensus 45 ~~~~l~~ii~~~~~~~~d~vv~~GDlf 71 (313)
....+.++.+..++.+||+|++.||..
T Consensus 96 ~~~~~~~l~~~l~~~kPDvVi~~g~~~ 122 (396)
T 3dzc_A 96 TSKILLGMQQVLSSEQPDVVLVHGDTA 122 (396)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEETTSH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCch
Confidence 345677777888889999999999864
No 123
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=21.01 E-value=1.7e+02 Score=25.79 Aligned_cols=46 Identities=13% Similarity=0.047 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 46 FVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 46 ~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
+..++++++...+.++|.|++.|=.=....-+.++..++.+...+.
T Consensus 44 ~~~l~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~ 89 (315)
T 3na8_A 44 LPALGRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKT 89 (315)
T ss_dssp HHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHH
Confidence 4578899999999999999999976666666777888888877654
No 124
>2vo9_A EAD500, L-alanyl-D-glutamate peptidase; cell WALL biogenesis/degradation, secreted, cell WALL, hydro; 1.8A {Bacteriophage A500} SCOP: d.65.1.5
Probab=20.95 E-value=79 Score=25.65 Aligned_cols=28 Identities=4% Similarity=0.046 Sum_probs=24.2
Q ss_pred ccchhHHHHHHHHHHHHhcCCCEEEEcC
Q psy11941 41 RGNDSFVSFEEILEQALDQEVDMVLLGG 68 (313)
Q Consensus 41 ~~~~~~~~l~~ii~~~~~~~~d~vv~~G 68 (313)
...+...+|+++++.|.+.++++.|++|
T Consensus 33 l~~~aa~al~~m~~~a~~~Gi~l~i~sg 60 (179)
T 2vo9_A 33 MYKITSDKTRNVIKKMAKEGIYLCVAQG 60 (179)
T ss_dssp SCHHHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred cCHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 3467778999999999999999988877
No 125
>2jz7_A Selenium binding protein; NMR {Methanococcus vannielii}
Probab=20.89 E-value=92 Score=21.94 Aligned_cols=22 Identities=9% Similarity=-0.068 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHhcCCCEEE
Q psy11941 44 DSFVSFEEILEQALDQEVDMVL 65 (313)
Q Consensus 44 ~~~~~l~~ii~~~~~~~~d~vv 65 (313)
+...+++++.+.|++.++|.||
T Consensus 32 aR~~A~~rm~e~A~~lGAnAVV 53 (81)
T 2jz7_A 32 NVDEIVENLRKQVKAKGGMGLI 53 (81)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEE
T ss_pred hHHHHHHHHHHHHHHcCCCEEE
Confidence 5567899999999999999865
No 126
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=20.59 E-value=3e+02 Score=23.27 Aligned_cols=34 Identities=29% Similarity=0.411 Sum_probs=21.3
Q ss_pred HHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 51 EILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 51 ~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
++++.+.+.++|+|.+.| +.. .+.+.+.+.++++
T Consensus 24 ~~~~~l~~~GaD~ielG~----S~G---vt~~~~~~~v~~i 57 (240)
T 1viz_A 24 EQLEILCESGTDAVIIGG----SDG---VTEDNVLRMMSKV 57 (240)
T ss_dssp HHHHHHHTSCCSEEEECC-----------CHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEECC----CCC---CCHHHHHHHHHHh
Confidence 346666788999999999 222 2345566666655
No 127
>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}
Probab=20.35 E-value=1.8e+02 Score=25.29 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 49 FEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 49 l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
++++++.|++.+++.++++|-- .+....+.+..+++
T Consensus 19 ~~~vl~~a~~~gV~~~v~~g~~-------~~~~~~~~~la~~~ 54 (287)
T 3rcm_A 19 QAAIVERALEAGVTQMLLTGTS-------LAVSEQALELCQQL 54 (287)
T ss_dssp HHHHHHHHHHTTEEEEEECCCS-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEEEecCC-------HHHHHHHHHHHHhC
Confidence 6789999999999999988642 25566666666643
No 128
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=20.22 E-value=1.9e+02 Score=25.28 Aligned_cols=46 Identities=4% Similarity=0.013 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHh
Q psy11941 46 FVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKY 91 (313)
Q Consensus 46 ~~~l~~ii~~~~~~~~d~vv~~GDlf~~~~~~~~~~~~~~~~l~~l 91 (313)
+..++++++...+.++|.+++.|=.=....-+.++..++.+...+.
T Consensus 20 ~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~ 65 (297)
T 2rfg_A 20 EKALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQ 65 (297)
T ss_dssp HHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHH
Confidence 3468899999889999999999877666666777888888877654
No 129
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=20.04 E-value=82 Score=24.99 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEcCCcC
Q psy11941 45 SFVSFEEILEQALDQEVDMVLLGGDLF 71 (313)
Q Consensus 45 ~~~~l~~ii~~~~~~~~d~vv~~GDlf 71 (313)
..+.+.+.++.+.++++|+||.+|=+=
T Consensus 54 d~~~I~~~l~~a~~~~~DlVittGG~g 80 (167)
T 2g2c_A 54 GYDTVVEAIATALKQGARFIITAGGTG 80 (167)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEESCCS
T ss_pred CHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 334566677666665699999999764
Done!