RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11941
(313 letters)
>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32
chimeric protein; DNA double-strand break repair,
nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe}
PDB: 4fbq_A*
Length = 472
Score = 288 bits (738), Expect = 4e-95
Identities = 145/317 (45%), Positives = 208/317 (65%), Gaps = 4/317 (1%)
Query: 1 MESQDSEEVKQEEVEYDDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQE 60
+ + S++V NTIRI+I+SD H+GY E D RGNDSFVSF EILE A +++
Sbjct: 56 FQKKASQKVDGSAGSAGSENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERD 115
Query: 61 VDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCN---DHVNY 117
VDM+LLGGD+FH NKPS L + L +LR C+GD+ ++++SD L + ++NY
Sbjct: 116 VDMILLGGDIFHDNKPSRKALYQALRSLRLNCLGDKPCELELLSDTSLTTGDTAVCNINY 175
Query: 118 MDPNLNISLPVFTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQK 177
+DPN+N+++PVF+I+GNHDDPSG +ALDI+ +GLVNYFG+ + I ++P+++QK
Sbjct: 176 LDPNINVAIPVFSIHGNHDDPSGDGRYSALDILQVTGLVNYFGRVPENDNIVVSPILLQK 235
Query: 178 NETKVAIFGLGYVKDERLCNMIKHNKVKYMKPTDDKDIIY-ILVLHQNRPERGTVKNIAE 236
TK+A++G+ V+DERL + + NKVK+++P +D + +L +HQN + E
Sbjct: 236 GFTKLALYGISNVRDERLYHSFRENKVKFLRPDLYRDEWFNLLTVHQNHSAHTPTSYLPE 295
Query: 237 DSIPSFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNK 296
I F+ F+LWGHEHEC I YN Q+F V QPGS +ATSL GE K CGIL
Sbjct: 296 SFIQDFYDFVLWGHEHECLIDGSYNPTQKFTVVQPGSTIATSLSPGETAPKHCGILNITG 355
Query: 297 QNYKLVPRSLETVRPFV 313
+++ L L TVRPF+
Sbjct: 356 KDFHLEKIRLRTVRPFI 372
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex,
metallophosphatase, exonuclease, endonuclease, RAD50,
NBS1, hydrolase; 3.00A {Homo sapiens}
Length = 431
Score = 285 bits (730), Expect = 2e-94
Identities = 144/306 (47%), Positives = 204/306 (66%), Gaps = 4/306 (1%)
Query: 12 EEVEYDDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLF 71
DD NT +I++A+DIHLG++E D RGND+FV+ +EIL A + EVD +LLGGDLF
Sbjct: 23 TADALDDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGDLF 82
Query: 72 HINKPSPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCN---DHVNYMDPNLNISLPV 128
H NKPS TL CLE LRKYC+GDR V +++SD + VNY D NLNIS+PV
Sbjct: 83 HENKPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISIPV 142
Query: 129 FTINGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLG 188
F+I+GNHDDP+G + + ALDI+S +G VN+FG+ ++ +I ++P+++QK TK+A++GLG
Sbjct: 143 FSIHGNHDDPTGADALCALDILSCAGFVNHFGRSMSVEKIDISPVLLQKGSTKIALYGLG 202
Query: 189 YVKDERLCNMIKHNKVKYMKPTDDKDIIY-ILVLHQNRPERGTVKNIAEDSIPSFFHFIL 247
+ DERL M + KV ++P +D++ + + V+HQNR + G+ I E + F ++
Sbjct: 203 SIPDERLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDLVI 262
Query: 248 WGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPRSLE 307
WGHEHEC+I P N +Q F++ QPGS V TSL GEAV+K G+L + + L
Sbjct: 263 WGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIPLH 322
Query: 308 TVRPFV 313
TVR F
Sbjct: 323 TVRQFF 328
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease,
hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe}
PDB: 4fcx_B*
Length = 417
Score = 283 bits (724), Expect = 1e-93
Identities = 144/303 (47%), Positives = 204/303 (67%), Gaps = 4/303 (1%)
Query: 15 EYDDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHIN 74
E + NTIRI+I+SD H+GY E D RGNDSFVSF EILE A +++VDM+LLGGD+FH N
Sbjct: 7 ELHNENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERDVDMILLGGDIFHDN 66
Query: 75 KPSPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCN---DHVNYMDPNLNISLPVFTI 131
KPS L + L +LR C+GD+ ++++SD L + ++NY+DPN+N+++PVF+I
Sbjct: 67 KPSRKALYQALRSLRLNCLGDKPCELELLSDTSLTTGDTAVCNINYLDPNINVAIPVFSI 126
Query: 132 NGNHDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVK 191
+GNHDDPSG +ALDI+ +GLVNYFG+ + I ++P+++QK TK+A++G+ V+
Sbjct: 127 HGNHDDPSGDGRYSALDILQVTGLVNYFGRVPENDNIVVSPILLQKGFTKLALYGISNVR 186
Query: 192 DERLCNMIKHNKVKYMKPTDDKDIIY-ILVLHQNRPERGTVKNIAEDSIPSFFHFILWGH 250
DERL + + NKVK+++P +D + +L +HQN + E I F+ F+LWGH
Sbjct: 187 DERLYHSFRENKVKFLRPDLYRDEWFNLLTVHQNHSAHTPTSYLPESFIQDFYDFVLWGH 246
Query: 251 EHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPRSLETVR 310
EHEC I YN Q+F V QPGS +ATSL GE K CGIL +++ L L TVR
Sbjct: 247 EHECLIDGSYNPTQKFTVVQPGSTIATSLSPGETAPKHCGILNITGKDFHLEKIRLRTVR 306
Query: 311 PFV 313
PF+
Sbjct: 307 PFI 309
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP,
manganese, replication; HET: DA; 2.20A {Pyrococcus
furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Length = 333
Score = 105 bits (263), Expect = 3e-26
Identities = 61/285 (21%), Positives = 100/285 (35%), Gaps = 57/285 (20%)
Query: 22 IRIMIASDIHLGY-LETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTT 80
++ +DIHLGY +R + +F+ LE A+ + VD +L+ GDLFH ++PSP T
Sbjct: 1 MKFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDLFHSSRPSPGT 60
Query: 81 LKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSG 140
LKK + L+ + +PVF I GNHD
Sbjct: 61 LKKAIALLQI------------PKEHS------------------IPVFAIEGNHD--RT 88
Query: 141 PELVAALDIVSNSGLVNYFGKCTNLNE--------ITLNPLIIQKNETKVAIFGLGYVKD 192
+ L+++ + GLV G E + +++ + I G+ Y+
Sbjct: 89 QRGPSVLNLLEDFGLVYVIGMRKEKVENEYLTSERLGNGEYLVKGVYKDLEIHGMKYMSS 148
Query: 193 ERLCNMIKHNKVKYMKPTDDKDIIYILVLHQ-----NRPERGTVKNIAEDSIPSFFHFIL 247
+ +K IL+LHQ + I +P + +
Sbjct: 149 AWF-----EANKEILKRLFRPTDNAILMLHQGVREVSEARGEDYFEIGLGDLPEGYLYYA 203
Query: 248 WGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGIL 292
GH H K + V PGS G+ +
Sbjct: 204 LGHIH----KRYETSYSGSPVVYPGSLERWDF--GDYEVRYEWDG 242
>3av0_A DNA double-strand break repair protein MRE11; DNA repair,
calcineurin-like phosphoesterase, ABC transporte
domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus
jannaschii} PDB: 3auz_A*
Length = 386
Score = 103 bits (257), Expect = 3e-25
Identities = 52/264 (19%), Positives = 89/264 (33%), Gaps = 57/264 (21%)
Query: 20 NTIRIMIASDIHLGY-LETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSP 78
+ + + +D HLGY +R D + SF+ +++ L+ + D+VL GDLF+ +P
Sbjct: 19 SHMMFVHIADNHLGYRQYNLDDREKDIYDSFKLCIKKILEIKPDVVLHSGDLFNDLRPPV 78
Query: 79 TTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDP 138
L+ ++ +K + + NI V+ + GNH+ P
Sbjct: 79 KALRIAMQAFKK------------LHE----------------NNI--KVYIVAGNHEMP 108
Query: 139 SGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVKDERLCNM 198
L + V +I N ++ I G Y K + M
Sbjct: 109 R--RLGEESPLALLKDYVKILDG----------KDVINVNGEEIFICGTYYHKKSKREEM 156
Query: 199 IKHNKVKYMKPTDDKDIIYILVLHQ----NRPERGTVKNIAEDSIPSFFHFILWGHEHEC 254
+ +K+K + IL+LHQ P + E F + GH H
Sbjct: 157 L--DKLKNFESEAKNYKKKILMLHQGINPYIPLDYEL----EHFDLPKFSYYALGHIH-- 208
Query: 255 RIKPEYNTKQRFHVCQPGSPVATS 278
K + GS
Sbjct: 209 --KRILERFNDGILAYSGSTEIIY 230
>2q8u_A Exonuclease, putative; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima
MSB8} PDB: 3thn_A
Length = 336
Score = 83.6 bits (207), Expect = 1e-18
Identities = 55/288 (19%), Positives = 94/288 (32%), Gaps = 68/288 (23%)
Query: 22 IRIMIASDIHLGY----LETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFH-INKP 76
++I+ SD HLG +R + + ++++E+A +EVD++LL GDL H N P
Sbjct: 19 LKILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKREVDLILLTGDLLHSRNNP 78
Query: 77 SPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHD 136
S L L+ L++ + + PV + GNHD
Sbjct: 79 SVVALHDLLDYLKR-------------------------------MMRTAPVVVLPGNHD 107
Query: 137 DPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVKDERLC 196
+ +S+ + + + K KV I Y +
Sbjct: 108 WKGLKLFGNFVTSISSDITFV-----MSFEPVDVE----AKRGQKVRILPFPYPDESEAL 158
Query: 197 NMIKHNK--------VKYMKPTDDKDIIYILVLHQ-------NRP-ERGTVKNIAEDSIP 240
+ + K + K+ I + H E+G I IP
Sbjct: 159 RKNEGDFRFFLESRLNKLYEEALKKEDFAIFMGHFTVEGLAGYAGIEQGREIIINRALIP 218
Query: 241 SFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKK 288
S + GH H +++ PGS + GE +K
Sbjct: 219 SVVDYAALGHIH----SF-REIQKQPLTIYPGSLIRIDF--GEEADEK 259
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins,
DNA breaks, DOUB stranded, DNA repair, DNA repair
enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB:
3qg5_C
Length = 379
Score = 81.3 bits (201), Expect = 1e-17
Identities = 54/288 (18%), Positives = 93/288 (32%), Gaps = 68/288 (23%)
Query: 22 IRIMIASDIHLGY----LETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFH-INKP 76
++I+ SD HLG +R + + ++++E+A +EVD++LL GDL H N P
Sbjct: 1 MKILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKREVDLILLTGDLLHSRNNP 60
Query: 77 SPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHD 136
S L L+ L++ + + PV + GN D
Sbjct: 61 SVVALHDLLDYLKR-------------------------------MMRTAPVVVLPGNQD 89
Query: 137 DPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVKDERLC 196
+ +S+ + + + K KV I Y +
Sbjct: 90 WKGLKLFGNFVTSISSDITFV-----MSFEPVDVE----AKRGQKVRILPFPYPDESEAL 140
Query: 197 NMIKHNK--------VKYMKPTDDKDIIYILVLHQ-------NRP-ERGTVKNIAEDSIP 240
+ + K + K+ I + H E+G I IP
Sbjct: 141 RKNEGDFRFFLESRLNKLYEEALKKEDFAIFMGHFTVEGLAGYAGIEQGREIIINRALIP 200
Query: 241 SFFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKK 288
S + GH H +++ PGS + GE +K
Sbjct: 201 SVVDYAALGHIH----SF-REIQKQPLTIYPGSLIRIDF--GEEADEK 241
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown
function, NPPSFA, national PROJ protein structural and
functional analyses; 1.60A {Aquifex aeolicus} SCOP:
d.159.1.6
Length = 260
Score = 50.9 bits (121), Expect = 1e-07
Identities = 26/254 (10%), Positives = 71/254 (27%), Gaps = 56/254 (22%)
Query: 23 RIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLK 82
+++ + + F ++ +++ D++++ G++
Sbjct: 7 KVLAIKNFK------------ERFDLLPKLKGVIAEKQPDILVVVGNILKNEALE----- 49
Query: 83 KCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPE 142
+ + + R VI + + + + + + F + G +D P
Sbjct: 50 ---KEYERAHLARREPNRKVIHENEHYIIETLDKFFREIGELGVKTFVVPGKNDAPLKIF 106
Query: 143 LVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYV-------KDERL 195
L AA + + L+E + + G G + +D L
Sbjct: 107 LRAAYEA------ETAYPNIRVLHEGFAGW------RGEFEVIGFGGLLTEHEFEEDFVL 154
Query: 196 CNMIKHNKVKYMKPTDDKDIIYILVLH------------QNRPERG--TVKNIAEDSIPS 241
+ + + K + + + ++ G V I + P
Sbjct: 155 KYPRWYVEYILKFVNELKPRRLVTIFYTPPIGEFVDRTPEDPKHHGSAVVNTIIKSLNP- 213
Query: 242 FFHFILWGHEHECR 255
+ GH +
Sbjct: 214 --EVAIVGHVGKGH 225
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.0 bits (119), Expect = 6e-07
Identities = 64/346 (18%), Positives = 104/346 (30%), Gaps = 129/346 (37%)
Query: 12 EEVEYDDRNTIRIMIASDIHL-----GYLETDRERGNDSFVSFEEILEQALDQEVDMVLL 66
E DD + L GY+ + E F+++L L + + L
Sbjct: 46 EGFAADDE------PTTPAELVGKFLGYVSSLVEPSKVG--QFDQVLNLCLTEFENCYLE 97
Query: 67 GGDLFH-----INKPSPTTLKKCLETLRKY----CIGDRSVFIDVISDPKLVMCNDHVNY 117
G D+ H + + + TTL K E ++ Y + R D S+ L V
Sbjct: 98 GNDI-HALAAKLLQENDTTLVKTKELIKNYITARIMAKRP--FDKKSNSALF---RAVG- 150
Query: 118 MDPNLNISLPVFTI---NGNHDDP---------SGPELVAALDIVSNSGLVNYFGKCTNL 165
+ N + I GN DD + LV D++ S
Sbjct: 151 -EGNAQL----VAIFGGQGNTDDYFEELRDLYQTYHVLVG--DLIKFSAE---------- 193
Query: 166 NEITLNPLIIQKNETKVAIFGLGYVKDERLCNMIK--HNKVKYMKPTDDKD--------- 214
TL+ LI + + +F G N+++ N P DKD
Sbjct: 194 ---TLSELIRTTLDAEK-VFTQG-------LNILEWLENPSN--TP--DKDYLLSIPISC 238
Query: 215 -II-------YILVLHQN--RPE------RGT---VKNI-------AEDSIPSFF----- 243
+I Y++ P +G + + DS SFF
Sbjct: 239 PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK 298
Query: 244 --HFILW-GHEHECRIKPEYNTKQRF-HVCQPGSPVATSLCAGEAV 285
+ + G R + + + P S + SL E V
Sbjct: 299 AITVLFFIG----VR------CYEAYPNTSLPPSILEDSLENNEGV 334
Score = 40.4 bits (94), Expect = 7e-04
Identities = 43/268 (16%), Positives = 75/268 (27%), Gaps = 105/268 (39%)
Query: 44 DSFVSFEEILEQALDQEVDMVLLGGDLFHI----------NKPSPTTLKKCLET------ 87
DS+ SF + +A+ V LF I P+ L+ LE
Sbjct: 287 DSWESFFVSVRKAI--TV--------LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS 336
Query: 88 --LRKYCIG-DRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDP-----S 139
L + D ++ N H+ + ISL +NG S
Sbjct: 337 PMLS--ISNLTQEQVQDYVNK-----TNSHLP-AGKQVEISL----VNG----AKNLVVS 380
Query: 140 GPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKN----ETKVAIFGLGYVKDERL 195
GP +L GL L + + Q E K+ F ++
Sbjct: 381 GP--PQSLY-----GL------NLTLRKAKAPSGLDQSRIPFSERKLK-FSNRFLP---- 422
Query: 196 CNMIK---HNKVKYMKPTDDKDIIYILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHEH 252
+ H+ + P D I +D + + F +
Sbjct: 423 ---VASPFHS--HLLVPASDL--------------------INKDLVKNNVSF----NAK 453
Query: 253 ECRIKPEYNTKQRFHVCQPGSPVATSLC 280
+ +I P Y+T + ++ +
Sbjct: 454 DIQI-PVYDTFDGSDLRVLSGSISERIV 480
Score = 37.3 bits (86), Expect = 0.007
Identities = 47/276 (17%), Positives = 86/276 (31%), Gaps = 104/276 (37%)
Query: 25 MIA-SDIHLGYLETDRERGNDSFVSFEEILEQAL----DQEVDMVLLGGDLFHINKPSPT 79
M++ S++ ++ + N + + +E +L +V+ G P
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSH-LPAGKQVEISLVNGAKN---LVVSG---------PPQ 384
Query: 80 TLKKCLETLRKYCIGD-----RSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGN 134
+L TLRK R F S+ KL + L ++ P F
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPF----SERKLKF---SNRF----LPVASP-F----- 427
Query: 135 HDDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIF----GLGYV 190
H S LV A D++ ++ N + + ++ ++ G
Sbjct: 428 H---S-HLLVPASDLI--------------NKDLVKNNVSFNAKDIQIPVYDTFDG---- 465
Query: 191 KD---------ERLCNMIKHNKVKYMKPTDDKDIIYILVL------------HQNRPERG 229
D ER+ + I VK+ T +IL H+N+ G
Sbjct: 466 SDLRVLSGSISERIVDCIIRLPVKWET-TTQFKATHILDFGPGGASGLGVLTHRNK--DG 522
Query: 230 T-VKNIAEDSIPSFFHFILWGHEHECRIKPEYNTKQ 264
T V+ I ++ + +Y KQ
Sbjct: 523 TGVRVIVAGTL-------------DINPDDDYGFKQ 545
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold,
swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium
tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Length = 330
Score = 46.1 bits (109), Expect = 6e-06
Identities = 33/180 (18%), Positives = 54/180 (30%), Gaps = 44/180 (24%)
Query: 19 RNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQ--ALDQEVDMVLLGGDLFHINKP 76
R ++ SD HL + D+ E+LEQ D ++ GDL +K
Sbjct: 23 RPDYVLLHISDTHLIGGDRRLYGAVDADDRLGELLEQLNQSGLRPDAIVFTGDL--ADKG 80
Query: 77 SPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHD 136
P +K + + + + + GNHD
Sbjct: 81 EPAAYRKLRGLVEPF-----------------------------AAQLGAELVWVMGNHD 111
Query: 137 DPSGPELVAAL-DIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVKDERL 195
D EL L D + ++ L I L+ T V G ++ +L
Sbjct: 112 DR--AELRKFLLDEAPSMAPLDRVCMIDGLRIIVLD--------TSVPGHHHGEIRASQL 161
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.10A {Thermus
thermophilus} SCOP: d.159.1.6
Length = 228
Score = 45.5 bits (107), Expect = 7e-06
Identities = 18/131 (13%), Positives = 30/131 (22%), Gaps = 46/131 (35%)
Query: 19 RNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSP 78
R I+ S+ + E+ ++ A D D + L G+L
Sbjct: 3 RTVRYILATSNPM------------GDLEALEKFVKLAPDTGADAIALIGNLMP-KAAKS 49
Query: 79 TTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDP 138
L + LP + G D P
Sbjct: 50 RDYAAFFRILSE---------------------------------AHLPTAYVPGPQDAP 76
Query: 139 SGPELVAALDI 149
L A ++
Sbjct: 77 IWEYLREAANV 87
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria
monocytogenes}
Length = 443
Score = 44.0 bits (103), Expect = 4e-05
Identities = 44/327 (13%), Positives = 87/327 (26%), Gaps = 92/327 (28%)
Query: 3 SQDSEEVKQEEVEYDDRNTIRIMIASDIHLG--------------YLETDRERGNDSFVS 48
S S + ++ + + +++ +D+H D ++ S
Sbjct: 21 SSASGKTEKITAPIEKDRNLSMVVTTDVHYFAPSLTDNGKAFEKYVAAGDGKQLAYSDEI 80
Query: 49 FEEILEQALDQEVDMVLLGGDL-FHINKPSPTTLKKCLETLRKYCIGDRSVFIDVISDPK 107
+ L ++ D++++ GDL + K S L K L + K
Sbjct: 81 TDAFLADVESKKTDVLIISGDLTNNGEKTSHEELAKKLTQVEKN---------------- 124
Query: 108 LVMCNDHVNYMDPNLNISLPVFTINGNHDDPSG------PELVAALDIVSNSGLVNYFGK 161
VF + GNHD + + D +S + +
Sbjct: 125 -----------------GTQVFVVPGNHDINNPWARKFEKDKQLPTDTISPTDFSKIYSD 167
Query: 162 CTNLNE--------------------ITLNPLIIQKNETKVAIFGLGYVKDERLCNMIKH 201
+ + L+ I + N + G + L + +
Sbjct: 168 FGYEDAISSDEFSLSYLAAPSSKVWLLMLDTAIYKTNMQQGNPTTEGGLTAGTLDWIKES 227
Query: 202 NKVKYMKPTDDKDIIYILVLHQN-------RPERGTVKNIAEDSIPSF----FHFILWGH 250
I VLH N + T+ + I + F L GH
Sbjct: 228 -----SALAKKNGAKLIPVLHHNLTDHNDVIQKGYTINY-NQQVIDALTEGAMDFSLSGH 281
Query: 251 EHECRIKPEYNTKQR-FHVCQPGSPVA 276
H I+ +T + +
Sbjct: 282 IHTQNIRSAKSTDGKEITDIVTNALSV 308
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 5e-05
Identities = 50/373 (13%), Positives = 99/373 (26%), Gaps = 152/373 (40%)
Query: 6 SEEVKQEEVEYDDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALD------- 58
EE+ + D + + L + +E FV EE+L
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLF------WTLLSKQEEMVQKFV--EEVLRINYKFLMSPIK 99
Query: 59 --------------QEVDMVLLGGDLF---HINKPSP-TTLKKCLETLR--KYCI----- 93
++ D + +F ++++ P L++ L LR K +
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 94 --GDRSVFIDVISDPKLVM-------------CNDHVNYMDPNLNISL---PVFTINGNH 135
G V +DV K+ CN ++ + P +T +H
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 136 DD--PSGPE-------------------LVAALDIVSNSGLVNYFG-KCTNL-------- 165
LV L V N+ N F C L
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLV--LLNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 166 ---------NEITLNPLI--IQKNETK-------------------------VAIFG--- 186
I+L+ + +E K ++I
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 187 ---------LGYVKDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTVKNIAED 237
+V ++L +I+ + + ++P + + + L +
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIE-SSLNVLEPAEYRKMFDRLSVFP------------PS 384
Query: 238 S-IPSFFHFILWG 249
+ IP+ ++W
Sbjct: 385 AHIPTILLSLIWF 397
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase,
phosphatase, metal ION; 1.90A {Enterobacter aerogenes}
SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Length = 274
Score = 41.3 bits (97), Expect = 2e-04
Identities = 21/114 (18%), Positives = 36/114 (31%), Gaps = 39/114 (34%)
Query: 28 SDIHLGYLETDRERGNDSFVSFEEILEQ--ALDQEVDMVLLGGDLFHINKPSP-TTLKKC 84
SD H D + +++ Q AL + D V++ GD+ + +P ++
Sbjct: 7 SDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQI 66
Query: 85 LETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDP 138
L +L P++ I GNHDD
Sbjct: 67 LGSLN------------------------------------YPLYLIPGNHDDK 84
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase,
PSI, protein structure initiative, midwest center for
structural genomics, MCSG; 2.25A {Escherichia coli}
SCOP: d.159.1.7
Length = 208
Score = 37.4 bits (87), Expect = 0.002
Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 16/81 (19%)
Query: 23 RIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLF----HINKPSP 78
++M ASDIH S + E +LE +++ GD+ P
Sbjct: 27 KLMFASDIH------------GSLPATERVLELFAQSGAQWLVILGDVLNHGPRNALPEG 74
Query: 79 TTLKKCLETLRKYCIGDRSVF 99
K +E L + +V
Sbjct: 75 YAPAKVVERLNEVAHKVIAVR 95
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease,
structural genomics, BSGC struc funded by NIH; 2.40A
{Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB:
1s3m_A 1s3n_A 2ahd_A
Length = 190
Score = 36.6 bits (85), Expect = 0.005
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 12/48 (25%)
Query: 23 RIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDL 70
+I I SD H D + + +E D+ V+ V+ GD
Sbjct: 27 KIGIMSDTH------------DHLPNIRKAIEIFNDENVETVIHCGDF 62
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for
structural genomics, MCSG, Zn binding, hydrolase; 1.95A
{Sphaerobacter thermophilus}
Length = 246
Score = 35.5 bits (81), Expect = 0.013
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 18/74 (24%)
Query: 20 NTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPT 79
N +RI+I SD+H N V+ E +L A VD + GD+ P P
Sbjct: 2 NAMRILIISDVH----------AN--LVALEAVLSDA--GRVDDIWSLGDIVGYG-PRP- 45
Query: 80 TLKKCLETLRKYCI 93
++C+E +R
Sbjct: 46 --RECVELVRVLAP 57
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric
AP4A hydrolase, phosphodiesterase, binding, Mn2+
binding, hydrolase; 1.90A {Streptococcus pneumoniae}
PDB: 3qfn_A 3qfo_A*
Length = 270
Score = 35.4 bits (81), Expect = 0.016
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 16/72 (22%)
Query: 20 NTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPT 79
+ +I + SDIH GN + E +L A VD L GD+
Sbjct: 10 DMTKIALLSDIH----------GN--TTALEAVLADARQLGVDEYWLLGDILMPG-TGR- 55
Query: 80 TLKKCLETLRKY 91
++ L+ L +
Sbjct: 56 --RRILDLLDQL 65
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase,
metalloprotein, metallophosphoesterase, protein
structure initiative; 1.70A {Danio rerio} SCOP:
d.159.1.12
Length = 322
Score = 33.4 bits (75), Expect = 0.075
Identities = 18/131 (13%), Positives = 34/131 (25%), Gaps = 36/131 (27%)
Query: 18 DRNTIRIMIASDIHLG-------YLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDL 70
+ + +D+ YL T R S + + Q + V V+ GD+
Sbjct: 2 EDPVFTFGLIADVQYADIEDGENYLRTRRRYYRGSADLLRDAVLQWRRERVQCVVQLGDI 61
Query: 71 FHINKPSPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFT 130
+ + L+ M S+ V
Sbjct: 62 IDGHNRRRDASDRALD-----------------------------TVMAELDACSVDVHH 92
Query: 131 INGNHDDPSGP 141
+ GNH+ +
Sbjct: 93 VWGNHEFYNFS 103
>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase
COG0622); structural genomics, predicted
phosphodiesterase, PSI-2; HET: SRT; 2.30A
{Streptococcus pneumoniae} SCOP: d.159.1.7
Length = 176
Score = 31.5 bits (72), Expect = 0.21
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 13/47 (27%)
Query: 23 RIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGD 69
I++ SD H G EE+ ++ + +VD V GD
Sbjct: 8 TIIVMSDSH-GDSL-----------IVEEVRDRYVG-KVDAVFHNGD 41
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP:
d.159.1.5 PDB: 2gju_A
Length = 252
Score = 31.3 bits (70), Expect = 0.29
Identities = 10/83 (12%), Positives = 28/83 (33%), Gaps = 21/83 (25%)
Query: 23 RIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQE-----VDMVLLGGDLFHINKPS 77
+ + ++I GN + L + + ++ + G++ + P
Sbjct: 3 YVAVLANIA----------GN--LPALTAALSRIEEMREEGYEIEKYYILGNIVGLF-PY 49
Query: 78 PTTLKKCLETLRKYCIGDRSVFI 100
P K+ +E ++ + I
Sbjct: 50 P---KEVIEVIKDLTKKENVKII 69
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami
diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia
coli} PDB: 2q27_A* 2q29_A*
Length = 564
Score = 31.0 bits (71), Expect = 0.49
Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 13/70 (18%)
Query: 57 LDQEVDMVLL----GGDLFHINKPS--PTTLKKCLETLRKYCIGDRSVFIDVISDPKLVM 110
L L G +++ L +++ + I+V+ DP
Sbjct: 496 LLHHARYDKLMDAFRGVGYNVTTTDELRHALTTGIQS-------RKPTIINVVIDPAAGT 548
Query: 111 CNDHVNYMDP 120
+ H+ ++P
Sbjct: 549 ESGHITKLNP 558
>3zta_A MTR, anti-sigma-factor antagonist (STAS) domain protei; signaling,
signal transduction, phosphorylation, protein-Pro
interaction; 2.70A {Moorella thermoacetica}
Length = 146
Score = 29.7 bits (66), Expect = 0.77
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 13 EVEYDDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFH 72
E+E + + ++IM A H+ L+ E+ DSF+S I EQ D + + H
Sbjct: 57 ELEKEIADKVKIMFAQGYHIEVLQLILEKILDSFISV--IREQYHDLQAAASYITTVRDH 114
Query: 73 INKPSPTTLKKCLETLRK 90
I K + LK L+T R+
Sbjct: 115 IFKGTSFLLKMALQTQRE 132
>2kzb_A Autophagy-related protein 19; selective autophagy, ATG19,
alpha-mannosidase, protein trans; NMR {Saccharomyces
cerevisiae}
Length = 118
Score = 29.0 bits (64), Expect = 0.81
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 138 PSGPELVA--ALDIVSNSGLVNYFGKCTNLNEITLNPLI 174
P +L A ++I + G V + GK + I L P
Sbjct: 75 PYALDLEAGSTIEIENQYGEVIFLGKYGSSPMINLRPPS 113
>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics,
joint center for structural genomics, J protein
structure initiative; 2.10A {Streptococcus pneumoniae}
SCOP: c.108.1.6
Length = 207
Score = 29.1 bits (66), Expect = 1.3
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 7/56 (12%)
Query: 49 FEEILEQA-LDQEVDMVLLGGDLFHINKPSPTTLKKCLETL-----RKYCIGDRSV 98
IL+ ++ +L + KPSP L+ Y IGDR++
Sbjct: 114 AFTILKDLGVESYFTEIL-TSQSGFVRKPSPEAATYLLDKYQLNSDNTYYIGDRTL 168
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel,
glycosyltransferase, transferase; HET: NDG; 1.85A
{Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A*
2zuw_A*
Length = 759
Score = 29.9 bits (67), Expect = 1.4
Identities = 8/25 (32%), Positives = 18/25 (72%)
Query: 45 SFVSFEEILEQALDQEVDMVLLGGD 69
F+SF+++L +D ++D+++ GG
Sbjct: 485 RFISFDDVLAHGIDSDIDVIINGGP 509
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Thermus
thermophilus} SCOP: d.218.1.5
Length = 98
Score = 28.1 bits (63), Expect = 1.4
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 28 SDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGG 68
SD+ L + + R + LE L VD+V G
Sbjct: 43 SDLDL-LVAFEEGRTLLDHARLKLALEGLLGVRVDIVSERG 82
>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase,
manganese, protein transport; 2.00A {Mus musculus}
SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A
1w24_A 2r17_A
Length = 192
Score = 29.0 bits (65), Expect = 1.5
Identities = 11/56 (19%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Query: 15 EYDDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDL 70
E+ R+ + +++ D+H+ + R N F+++L ++ +L G+L
Sbjct: 4 EFGTRDRMLVLVLGDLHIPH------RCNSLPAKFKKLLVPG---KIQHILCTGNL 50
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi
conformation, oxidoreductase; HET: NAD PDC; 2.50A
{Staphylococcus aureus} PDB: 3ojl_A*
Length = 431
Score = 29.5 bits (67), Expect = 1.5
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 175 IQKNETKVAIFGLGYV 190
+ +K+ + GLGY+
Sbjct: 7 HHHHGSKLTVVGLGYI 22
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction,
TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A
{Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A*
1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Length = 137
Score = 28.1 bits (63), Expect = 1.8
Identities = 5/55 (9%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 46 FVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRKYCIGDRSVFI 100
E ++ A++ + D +L+ + K + + + +++
Sbjct: 40 LSPQELFIKAAIETKADAILVSS----LYGQGEIDCKGLRQKCDEAGLEGILLYV 90
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 1.9
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 11/32 (34%)
Query: 80 TLKKCLE-TLRKYCIGDRSVFIDVISDPKLVM 110
LKK L+ +L+ Y D S P L +
Sbjct: 21 ALKK-LQASLKLYA-DD--------SAPALAI 42
Score = 27.6 bits (60), Expect = 3.9
Identities = 6/23 (26%), Positives = 11/23 (47%), Gaps = 7/23 (30%)
Query: 227 ERGTVKNI-------AEDSIPSF 242
E+ +K + A+DS P+
Sbjct: 18 EKQALKKLQASLKLYADDSAPAL 40
>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.51A {Lactobacillus delbrueckii}
Length = 240
Score = 28.8 bits (65), Expect = 2.0
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 50 EEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETL---RKYC--IGDRSV 98
+ ++E+ D L G KP+P +C++ L R C IGD +
Sbjct: 141 QVLVEELFPGSFDFAL-GEKSGIRRKPAPDMTSECVKVLGVPRDKCVYIGDSEI 193
>1clc_A Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycosyl hydrolase;
1.90A {Clostridium thermocellum} SCOP: a.102.1.2
b.1.18.2
Length = 639
Score = 29.1 bits (65), Expect = 2.1
Identities = 8/43 (18%), Positives = 10/43 (23%), Gaps = 1/43 (2%)
Query: 242 FFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEA 284
+ I PE +RF S A A
Sbjct: 256 RVAHKVSTRNFGGFIMPENEHDERF-FVPWSSAATADFVAMTA 297
>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics,
haloacid dehalogenase-like F PSI, protein structure
initiative; 1.40A {Streptococcus pneumoniae} SCOP:
c.108.1.3
Length = 190
Score = 28.3 bits (64), Expect = 2.7
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 48 SFEEILEQA-LDQEVDMVLLGGDLFHINKPSPTTLKKCLETL---RKYCIGDRSV 98
EILE+ + V+ KP+P ++ E IGDR +
Sbjct: 110 QVLEILEKTSIAAYFTEVV-TSSSGFKRKPNPESMLYLREKYQISSGLVIGDRPI 163
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN;
2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A*
3bw3_A*
Length = 369
Score = 28.5 bits (64), Expect = 3.3
Identities = 7/17 (41%), Positives = 9/17 (52%), Gaps = 3/17 (17%)
Query: 138 PSGPELVAALDIVSNSG 154
S P+L AA V +G
Sbjct: 22 VSVPQLAAA---VCEAG 35
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar
kinases, HSC70, superfamily; 1.90A {Escherichia coli}
SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*
Length = 513
Score = 28.4 bits (64), Expect = 3.5
Identities = 11/72 (15%), Positives = 21/72 (29%), Gaps = 20/72 (27%)
Query: 20 NTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPT 79
N+ ++IA + + Q + + V L L N S
Sbjct: 21 NSFHMVIA------------RVVDGAM--------QIIGRLKQRVHLADGLGPDNMLSEE 60
Query: 80 TLKKCLETLRKY 91
+ + L L +
Sbjct: 61 AMTRGLNCLSLF 72
Score = 27.6 bits (62), Expect = 5.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 135 HDDPSGPELVAALDIVSNS 153
HD P+ AA+D+ SNS
Sbjct: 4 HDKSPRPQEFAAVDLGSNS 22
>1ak0_A P1 nuclease; endonuclease, reaction mechanism, thiophosphory
oligonucleotides, glycosylated protein; HET: NAG ADS
THS; 1.80A {Penicillium citrinum} SCOP: a.124.1.2
Length = 270
Score = 27.9 bits (61), Expect = 3.6
Identities = 8/39 (20%), Positives = 13/39 (33%)
Query: 136 DDPSGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLI 174
D + P A + N V + G NL+ +
Sbjct: 119 GDMTQPLHDEAYAVGGNKINVTFDGYHDNLHSDWDTYMP 157
>1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular
transglucosylation, isomerase; HET: MLZ MLY; 1.90A
{Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1
Length = 720
Score = 28.4 bits (63), Expect = 3.7
Identities = 10/84 (11%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
Query: 33 GYLETDRERGNDSFVSFEEILE--QALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRK 90
Y+ R + + E+IL + L G D + + ++ ++++ +
Sbjct: 238 KYINDLRSIIKNXIIIVEKILGFQEELKLNS-DGTTGYDFLNYSNLLFNFNQEIMDSIYE 296
Query: 91 YCIGDRSVFIDVISDPKLVMCNDH 114
++ + I K + ++
Sbjct: 297 NFTAEKISISESIXKIKAQIIDEL 320
>2qrt_A H-2KB, H-2 class I histocompatibility antigen K-B alpha chain,
beta-2 microglobulin, ovalbumin-derived...; MHC-I,
single chain MHC-I, glycoprotein; 1.80A {Mus musculus}
PDB: 2qrs_A 2qri_A
Length = 422
Score = 28.2 bits (63), Expect = 4.0
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 9 VKQEEVEYDDRNTIRIMIASDIHLGYLETDRERGNDS 45
++QE EY +R T + L T N S
Sbjct: 194 MEQEGPEYWERETQKAKGNEQSFRVDLRTLLGCYNQS 230
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural
genomics, protein structure initiative; 2.40A
{Methanosarcina mazei GO1}
Length = 478
Score = 28.0 bits (63), Expect = 4.6
Identities = 8/28 (28%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 164 NLNEITLNPLIIQKNET-KVAIFGLGYV 190
+L+ L L+ ++ K+ + G+GYV
Sbjct: 2 SLSMSKLEKLLKERGPIKKIGVLGMGYV 29
>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.00A {Helicobacter pylori} SCOP:
e.39.1.1
Length = 240
Score = 27.5 bits (62), Expect = 4.7
Identities = 6/43 (13%), Positives = 15/43 (34%)
Query: 31 HLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHI 73
E + + +S E++ +D ++ + D I
Sbjct: 133 RKSVFECLKNEVENLKLSLEDLEFALIDYGLEELEEVEDKIII 175
>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural
genomics, protein structure initiative; 1.93A
{Clostridium acetobutylicum}
Length = 226
Score = 27.5 bits (62), Expect = 4.8
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 9/60 (15%)
Query: 50 EEILEQ-ALDQEVDMVLLGGDLFHINKPSPTTLKKCLETL---RKYC--IGDRSVFIDVI 103
++ILE L D ++ G L ++ +E+L IGDR DVI
Sbjct: 117 KQILEHFKLAFYFDAIV-GSSLDGKLSTKEDVIRYAMESLNIKSDDAIMIGDREY--DVI 173
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich,
structural genomics, structural genomics consortium,
SGC, protein transport; 2.20A {Cryptosporidium parvum}
SCOP: d.159.1.7
Length = 215
Score = 27.5 bits (61), Expect = 5.0
Identities = 14/117 (11%), Positives = 32/117 (27%), Gaps = 38/117 (32%)
Query: 24 IMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKK 83
+++ D+ + + E +++ VL G++ ++
Sbjct: 28 VLLIGDLKIP----YGAKELP-----SNFRELLATDKINYVLCTGNV---------CSQE 69
Query: 84 CLETLRKYCIGDRSVFIDVISDPKLVMC---ND-HVNYMDPNLNISLP---VFTING 133
+E L+ + + D + DP N P V I
Sbjct: 70 YVEMLKNIT-------------KNVYIVSGDLDSAIFNPDPESNGVFPEYVVVQIGE 113
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.9 bits (62), Expect = 5.1
Identities = 9/55 (16%), Positives = 15/55 (27%), Gaps = 15/55 (27%)
Query: 37 TDRERGNDSFVSFE-------EILEQALDQ------EVDMVLLGGDLFHINKPSP 78
R + F+ + + AL V M D + P+P
Sbjct: 1170 ATTTR--NGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAP 1222
>1hp1_A 5'-nucleotidase; metallophosphatase, dinuclear, metalloenzyme,
hydrolase, domain movement; HET: ATP; 1.70A {Escherichia
coli} SCOP: d.114.1.1 d.159.1.2 PDB: 1ush_A 2ush_A
1hpu_A* 1ho5_A* 1oi8_A 1oid_A 1oie_A
Length = 516
Score = 27.7 bits (62), Expect = 5.4
Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 21/99 (21%)
Query: 174 IIQKNETKVAIFGL-----------GYVKDERLCNMIKHNK--VKYMKPTDDKDIIYILV 220
+ ++ + K+A+ GL Y D K ++ ++ T+ DII I
Sbjct: 132 LFKRQDLKIAVIGLTTDDTAKIGNPEYFTDIEFRKPADEAKLVIQELQQTEKPDII-IAA 190
Query: 221 LH-------QNRPERGTVKNIAEDSIPSFFHFILWGHEH 252
H ++ +A I+ GH
Sbjct: 191 THMGHYDNGEHGSNAPGDVEMARALPAGSLAMIVGGHSQ 229
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM
barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP:
c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A*
3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Length = 227
Score = 27.6 bits (62), Expect = 5.5
Identities = 6/42 (14%), Positives = 14/42 (33%), Gaps = 4/42 (9%)
Query: 23 RIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMV 64
R M+ + + Y V ++++AL +
Sbjct: 11 REMMKELLSV-YFIMGSNNTKADPV---TVVQKALKGGATLY 48
>2egz_A 3-dehydroquinate dehydratase; aquifex aeolicus VF5, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; HET: TLA; 1.75A
{Aquifex aeolicus} PDB: 2ysw_A
Length = 219
Score = 27.2 bits (60), Expect = 5.9
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 47 VSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKKCLETLRK 90
+F E L++A ++ D+V L D F + S +K+ LE +
Sbjct: 10 TNFSENLKKAKEKGADIVELRVDQF--SDTSLNYVKEKLEEVHS 51
>2wmf_A Fucolectin-related protein; hydrolase, glycoside hydrolase, blood
group antigen, fucose utilization; 1.50A {Streptococcus
pneumoniae} PDB: 2wmh_A* 2wmg_A*
Length = 581
Score = 27.5 bits (60), Expect = 6.0
Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 14/97 (14%)
Query: 36 ETDRERGNDSFVSFEEILEQALDQEVDMVLLGG-----------DLFHINKPSPTTLKKC 84
ET R R S+ S E + + E+ V GG + P+P K
Sbjct: 257 ETGRARDMRSYASEPESM---IAMEMMNVYTGGGTVYNFECAAYTFMTNDVPTPAFTKGI 313
Query: 85 LETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPN 121
+ R +V++ K V N N
Sbjct: 314 IPFFRHAIQNPAPSKEEVVNRTKAVFWNGEGRISSLN 350
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 27.1 bits (60), Expect = 6.8
Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 14/55 (25%)
Query: 25 MIASDIHLGYLETDRERGNDSFV-------SFEEILEQALDQEVDMVLLGGDLFH 72
++ D LE RE+G + V F + VL GD+
Sbjct: 79 VVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFP-------SGAFEAVLALGDVLS 126
>3sd7_A Putative phosphatase; structural genomics, haloacid
dehalogenase-like hydrolase, H center for structural
genomics of infectious diseases; HET: PGE; 1.70A
{Clostridium difficile}
Length = 240
Score = 26.8 bits (60), Expect = 7.8
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 10/61 (16%)
Query: 50 EEILEQ-ALDQEVDMVLLGGDLFHINKPSPTTLKKCLETL----RKYC--IGDRSVFIDV 102
E IL +D+ + G +L ++ L+ + +GDR D+
Sbjct: 141 ETILRYFDIDRYFKYIA-GSNLDGTRVNKNEVIQYVLDLCNVKDKDKVIMVGDRKY--DI 197
Query: 103 I 103
I
Sbjct: 198 I 198
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 26.8 bits (59), Expect = 8.1
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 39 RERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSP-TTLKKCLETLRK 90
+ N E L+ D+ +D V++ + H++ L C ++
Sbjct: 80 EGKFNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKY 132
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.414
Gapped
Lambda K H
0.267 0.0450 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,757,240
Number of extensions: 285975
Number of successful extensions: 830
Number of sequences better than 10.0: 1
Number of HSP's gapped: 803
Number of HSP's successfully gapped: 77
Length of query: 313
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 220
Effective length of database: 4,105,140
Effective search space: 903130800
Effective search space used: 903130800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.4 bits)