RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11941
(313 letters)
>d1ii7a_ d.159.1.4 (A:) Mre11 {Archaeon Pyrococcus furiosus [TaxId:
2261]}
Length = 333
Score = 113 bits (283), Expect = 8e-30
Identities = 61/299 (20%), Positives = 106/299 (35%), Gaps = 45/299 (15%)
Query: 22 IRIMIASDIHLGYLETDR-ERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTT 80
++ +DIHLGY + + +R + +F+ LE A+ + VD +L+ GDLFH ++PSP T
Sbjct: 1 MKFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDLFHSSRPSPGT 60
Query: 81 LKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSG 140
LKK + L+ S+PVF I GNHD
Sbjct: 61 LKKAIALLQIPK------------------------------EHSIPVFAIEGNHDRTQR 90
Query: 141 PELVAALDIVSNSGLVNYFGKCTNLNE--------ITLNPLIIQKNETKVAIFGLGYVKD 192
+ L+++ + GLV G E + +++ + I G+ Y+
Sbjct: 91 GP--SVLNLLEDFGLVYVIGMRKEKVENEYLTSERLGNGEYLVKGVYKDLEIHGMKYMSS 148
Query: 193 ERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHEH 252
+ K + + +++ V + I +P + + GH H
Sbjct: 149 AWFEANKEILKRLFRPTDNAILMLHQGVREVSEARGEDYFEIGLGDLPEGYLYYALGHIH 208
Query: 253 ECRIKPEYNTKQRFHVCQPGSPVATSLCAGEAVQKKCGILMCNKQNYKLVPRSLETVRP 311
+ V PGS E + GI + +E +P
Sbjct: 209 KRYETSYSG----SPVVYPGSLERWDFGDYEVRYEWDGIKFKERYGVNKGFYIVEDFKP 263
>d2yvta1 d.159.1.6 (A:4-260) Uncharacterized protein Aq_1956
{Aquifex aeolicus [TaxId: 63363]}
Length = 257
Score = 74.0 bits (180), Expect = 5e-16
Identities = 21/264 (7%), Positives = 64/264 (24%), Gaps = 41/264 (15%)
Query: 21 TIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTT 80
+++ + + F ++ +++ D++++ G++
Sbjct: 2 PRKVLAIKNFK------------ERFDLLPKLKGVIAEKQPDILVVVGNILKNEALEKEY 49
Query: 81 LKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSG 140
+ L VI + + + + + + F + G +D P
Sbjct: 50 ERAHLARREPNRK--------VIHENEHYIIETLDKFFREIGELGVKTFVVPGKNDAPLK 101
Query: 141 PELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVKDERLCNMIK 200
L AA + + + + + + + +D L
Sbjct: 102 IFLRAAYEAETAYPNIRVLHEGFAGWRGEFEVIGFG-----GLLTEHEFEEDFVLKYPRW 156
Query: 201 HNKVKYMKPTDDKDIIYILVLHQNRPERGTVKN-----------IAEDSIPSFFHFILWG 249
+ + + K + + + + + + G
Sbjct: 157 YVEYILKFVNELKPRRLVTIFYTPPIGEFVDRTPEDPKHHGSAVVNTIIKSLNPEVAIVG 216
Query: 250 HEHECRIKPEYNTKQRFHVCQPGS 273
H + V PG
Sbjct: 217 HVGKGHELVG-----NTIVVNPGE 235
>d2hy1a1 d.159.1.11 (A:10-265) Rv0805 cyclic nucleotide
phosphodiesterase {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 256
Score = 45.6 bits (106), Expect = 3e-06
Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 2/105 (1%)
Query: 19 RNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQ--ALDQEVDMVLLGGDLFHINKP 76
R ++ SD HL + D+ E+LEQ D ++ GDL +P
Sbjct: 2 RPDYVLLHISDTHLIGGDRRLYGAVDADDRLGELLEQLNQSGLRPDAIVFTGDLADKGEP 61
Query: 77 SPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPN 121
+ + L +G V++ D + + ++
Sbjct: 62 AAYRKLRGLVEPFAAQLGAELVWVMGNHDDRAELRKFLLDEAPSM 106
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus
thermophilus [TaxId: 274]}
Length = 228
Score = 44.3 bits (103), Expect = 7e-06
Identities = 28/237 (11%), Positives = 54/237 (22%), Gaps = 50/237 (21%)
Query: 19 RNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSP 78
R I+ S+ G+ + E+ ++ A D D + L G+L
Sbjct: 3 RTVRYILATSNPM----------GD--LEALEKFVKLAPDTGADAIALIGNLM------- 43
Query: 79 TTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDP 138
PK D+ + LP + G D P
Sbjct: 44 ---------------------------PKAAKSRDYAAFFRILSEAHLPTAYVPGPQDAP 76
Query: 139 SGPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVKDERLCNM 198
L A ++ L+ + R
Sbjct: 77 IWEYLREAANV--ELVHPEMRNVHETFTFWRGPYLVAGVGGEIADEGEPEEHEALRYPAW 134
Query: 199 IKHNKVKYMKPTDDKDIIYILVLHQNRPERGTV--KNIAEDSIPSFFHFILWGHEHE 253
+ ++K + D I++ +A +L + +
Sbjct: 135 VAEYRLKALWELKDYPKIFLFHTMPYHKGLNEQGSHEVAHLIKTHNPLLVLVAGKGQ 191
>d2nxfa1 d.159.1.12 (A:3-322) Uncharacterized C17orf48 homolog
zgc:64213 {Zebrafish (Danio rerio) [TaxId: 7955]}
Length = 320
Score = 42.1 bits (97), Expect = 4e-05
Identities = 14/127 (11%), Positives = 31/127 (24%), Gaps = 7/127 (5%)
Query: 22 IRIMIASDIHLG-------YLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHIN 74
+ +D+ YL T R S + + Q + V V+ GD+ +
Sbjct: 4 FTFGLIADVQYADIEDGENYLRTRRRYYRGSADLLRDAVLQWRRERVQCVVQLGDIIDGH 63
Query: 75 KPSPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGN 134
+ L+T+ V + + + + +
Sbjct: 64 NRRRDASDRALDTVMAELDACSVDVHHVWGNHEFYNFSRPSLLSSRLNSAQRTGTDTGSD 123
Query: 135 HDDPSGP 141
Sbjct: 124 LIGDDIY 130
>d3d03a1 d.159.1.11 (A:1-271) Glycerophosphodiesterase GpdQ
{Enterobacter aerogenes [TaxId: 548]}
Length = 271
Score = 41.6 bits (96), Expect = 6e-05
Identities = 32/236 (13%), Positives = 63/236 (26%), Gaps = 46/236 (19%)
Query: 23 RIMIASDIHLGYLETDRERGNDSFVSFEEILEQ--ALDQEVDMVLLGGDLFHINKPSPTT 80
+ SD H D + +++ Q AL + D V++ GD+ +
Sbjct: 2 LLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCG------ 55
Query: 81 LKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSG 140
++ +++ P++ I GNHDD +
Sbjct: 56 -----------------------------RPEEYQVARQILGSLNYPLYLIPGNHDDKA- 85
Query: 141 PELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVKDERLCNMIK 200
L+ + + + ++ A G++ DE + +
Sbjct: 86 ----LFLEYLQPLCPQLGSDANNMRCAVDDFATRLLFIDSSRAGTSKGWLTDETISWLEA 141
Query: 201 HNKVKYMKPTDDKDIIYILVLHQNRPERGTVKNIAEDSIPSFFHF----ILWGHEH 252
KP L L + + +N I GH H
Sbjct: 142 QLFEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNH 197
>d1s3la_ d.159.1.7 (A:) Putative phosphodiesterase MJ0936
{Methanococcus jannaschii [TaxId: 2190]}
Length = 165
Score = 31.0 bits (69), Expect = 0.10
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 12/50 (24%)
Query: 23 RIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFH 72
+I I SD H D + + +E D+ V+ V+ GD
Sbjct: 2 KIGIMSDTH------------DHLPNIRKAIEIFNDENVETVIHCGDFVS 39
>d1xm7a_ d.159.1.8 (A:) Hypothetical protein aq_1666 {Aquifex
aeolicus [TaxId: 63363]}
Length = 188
Score = 30.2 bits (67), Expect = 0.20
Identities = 11/70 (15%), Positives = 20/70 (28%), Gaps = 7/70 (10%)
Query: 24 IMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEV---DMVLLGGDLFHINKPSPTT 80
+ SD H + F FE ++ L + + D + GD
Sbjct: 4 MYFISDTHFYHENIINLNPEVRFKGFEIVILTNLLKVLKPEDTLYHLGDFTW----HFND 59
Query: 81 LKKCLETLRK 90
+ L +
Sbjct: 60 KNEYLRIWKA 69
>d1su1a_ d.159.1.7 (A:) Phosphodiesterase yfcE {Escherichia coli
[TaxId: 562]}
Length = 184
Score = 29.9 bits (66), Expect = 0.24
Identities = 25/129 (19%), Positives = 45/129 (34%), Gaps = 18/129 (13%)
Query: 23 RIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTL- 81
++M ASDIH S + E +LE +++ GD+ + +
Sbjct: 3 KLMFASDIH------------GSLPATERVLELFAQSGAQWLVILGDVLNHGPRNALPEG 50
Query: 82 ---KKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDP 138
K +E L + + + + D ++ H P + L + H
Sbjct: 51 YAPAKVVERLN--EVAHKVIAVRGNCDSEVDQMLLHFPITAPWQQVLLEKQRLFLTHGHL 108
Query: 139 SGPELVAAL 147
GPE + AL
Sbjct: 109 FGPENLPAL 117
>d1wota_ d.218.1.5 (A:) Unnamed putative nucleotidyltransferase
{Thermus thermophilus [TaxId: 274]}
Length = 98
Score = 28.6 bits (64), Expect = 0.29
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 28 SDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGG 68
SD+ L + + R + LE L VD+V G
Sbjct: 43 SDLDL-LVAFEEGRTLLDHARLKLALEGLLGVRVDIVSERG 82
>d1utea_ d.159.1.1 (A:) Mammalian purple acid phosphatase {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 302
Score = 29.7 bits (65), Expect = 0.37
Identities = 32/232 (13%), Positives = 62/232 (26%), Gaps = 14/232 (6%)
Query: 21 TIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTT 80
+R + D + + + I D +L GD F+
Sbjct: 4 ILRFVAVGDWGGVPNAPFHTAREMA--NAKAIATTVKTLGADFILSLGDNFYFTGVHDAK 61
Query: 81 LKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSG 140
K+ ET + P V+ +H + + + I+ + N P
Sbjct: 62 DKRFQETFEDVFSDPSLRNV-----PWHVLAGNHDHLGNVSAQIAYSKISKRWNFPSPYY 116
Query: 141 PELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVKDERLCNMIK 200
I ++ V F L+ +TL + + +L + K
Sbjct: 117 RL---RFKIPRSNVSVAIFM----LDTVTLCGNSDDFVSQQPERPRNLALARTQLAWIKK 169
Query: 201 HNKVKYMKPTDDKDIIYILVLHQNRPERGTVKNIAEDSIPSFFHFILWGHEH 252
+ + ++ P VK + L GH+H
Sbjct: 170 QLAAAKEDYVLVAGHYPVWSIAEHGPTHCLVKQLLPLLTTHKVTAYLCGHDH 221
>d1nnwa_ d.159.1.5 (A:) Hypothetical protein PF1291 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 251
Score = 29.6 bits (65), Expect = 0.46
Identities = 12/98 (12%), Positives = 33/98 (33%), Gaps = 21/98 (21%)
Query: 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQ-----EVDMVLLGGDLFHINKP 76
+ + + ++I GN + L + + E++ + G++ +
Sbjct: 1 VYVAVLANIA----------GN--LPALTAALSRIEEMREEGYEIEKYYILGNIVGLFPY 48
Query: 77 SPTTLKKCLETLRKYCIGDRSVFIDVISDPKLVMCNDH 114
K+ +E ++ + I D + M + H
Sbjct: 49 P----KEVIEVIKDLTKKENVKIIRGKYDQIIAMSDPH 82
>d1clca1 a.102.1.2 (A:135-575) CelD cellulase, C-terminal domain
{Clostridium thermocellum [TaxId: 1515]}
Length = 441
Score = 29.2 bits (65), Expect = 0.62
Identities = 8/43 (18%), Positives = 10/43 (23%), Gaps = 1/43 (2%)
Query: 242 FFHFILWGHEHECRIKPEYNTKQRFHVCQPGSPVATSLCAGEA 284
+ I PE +RF S A A
Sbjct: 132 RVAHKVSTRNFGGFIMPENEHDERF-FVPWSSAATADFVAMTA 173
>d1g5ba_ d.159.1.3 (A:) lambda ser/thr protein phosphatase
{Bacteriophage lambda [TaxId: 10710]}
Length = 219
Score = 28.7 bits (63), Expect = 0.78
Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 13/81 (16%)
Query: 16 YDDRNTIRIMIASDIHLGYLETDRERGNDSFVSFEEILEQA-LDQEVDMVLLGGDLFHIN 74
D I + D+H G + + L+ D + D+++ GDL
Sbjct: 7 IDGSKYRNIWVVGDLH----------GC--YTNLMNKLDTIGFDNKKDLLISVGDLVDRG 54
Query: 75 KPSPTTLKKCLETLRKYCIGD 95
+ L+ + G+
Sbjct: 55 AENVECLELITFPWFRAVRGN 75
>d3bfxa1 c.37.1.5 (A:12-296) Sulfotransferase Sult1c2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 285
Score = 27.8 bits (61), Expect = 1.9
Identities = 26/189 (13%), Positives = 50/189 (26%), Gaps = 11/189 (5%)
Query: 22 IRIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTL 81
I+ ++ G +E + F E V+ PSP L
Sbjct: 44 IQEIVDMIEQNGDVEKCQRAIIQHRHPFIEWARPPQPSGVEKA--------KAMPSPRIL 95
Query: 82 KK--CLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPS 139
K + L + F+ V + K M + + ++ N + P +
Sbjct: 96 KTHLSTQLLPPSFWENNCKFLYVARNAKDCMVS-YYHFQRMNHMLPDPGTWEEYFETFIN 154
Query: 140 GPELVAALDIVSNSGLVNYFGKCTNLNEITLNPLIIQKNETKVAIFGLGYVKDERLCNMI 199
G + + + KV F V + L ++
Sbjct: 155 GKVVWGSWFDHVKGWWEMKDRHQILFLFYEDIKRDPKHEIRKVMQFMGKKVDETVLDKIV 214
Query: 200 KHNKVKYMK 208
+ + MK
Sbjct: 215 QETSFEKMK 223
>d2a22a1 d.159.1.7 (A:4-196) Vacuolar protein sorting 29, VPS29
{Cryptosporidium parvum [TaxId: 5807]}
Length = 193
Score = 27.0 bits (59), Expect = 2.4
Identities = 16/118 (13%), Positives = 39/118 (33%), Gaps = 19/118 (16%)
Query: 24 IMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHINKPSPTTLKK 83
+++ D+ + Y + +F E+L +++ VL G++ ++
Sbjct: 6 VLLIGDLKIPY------GAKELPSNFRELLAT---DKINYVLCTGNV---------CSQE 47
Query: 84 CLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGP 141
+E L+ V D+ + + + + F I H + P
Sbjct: 48 YVEMLKNITKNVYIVSGDL-DSAIFNPDPESNGVFPEYVVVQIGEFKIGLMHGNQVLP 104
>d1j5pa4 c.2.1.3 (A:-1-108,A:220-241) Hypothetical protein TM1643
{Thermotoga maritima [TaxId: 2336]}
Length = 132
Score = 26.6 bits (58), Expect = 2.6
Identities = 8/79 (10%), Positives = 25/79 (31%), Gaps = 11/79 (13%)
Query: 178 NETKVAIFGLGYV----------KDERLCNMIKHNKVKYMKPTDDKDIIYILVLHQNRPE 227
+ V I G+G + + + I + ++ + + + +
Sbjct: 1 HHMTVLIIGMGNIGKKLVELGNFEKIYAYDRISKDIPGVVRLDEFQVPSDVSTVV-ECAS 59
Query: 228 RGTVKNIAEDSIPSFFHFI 246
VK + + + ++I
Sbjct: 60 PEAVKEYSLQILKNPVNYI 78
>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum)
[TaxId: 4682]}
Length = 425
Score = 27.0 bits (59), Expect = 3.2
Identities = 9/52 (17%), Positives = 16/52 (30%)
Query: 91 YCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLNISLPVFTINGNHDDPSGPE 142
C F+D I C + Y P+ + + + + D E
Sbjct: 19 NCSEHGRAFLDGIISEGSPKCECNTCYTGPDCSEKIQGCSADVASGDGLFLE 70
>d3ck2a1 d.159.1.7 (A:1-173) Uncharacterized protein SP1879
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 173
Score = 26.3 bits (57), Expect = 3.9
Identities = 16/102 (15%), Positives = 34/102 (33%), Gaps = 15/102 (14%)
Query: 23 RIMIASDIHLGYLETDRERGNDSFVSFEEILEQALDQEVDMVLLGGDLFHIN-KPSPTTL 81
I++ SD H + EE+ + +VD V GD P +
Sbjct: 5 TIIVMSDSH------------GDSLIVEEVRD-RYVGKVDAVFHNGDSELRPDSPLWEGI 51
Query: 82 KKCLETLRKYCIGDRSVFIDVISDPKLVMCNDHVNYMDPNLN 123
+ + Y + + + K++ + H+ ++ N
Sbjct: 52 RVVKGNMDFYAGYPERLVTE-LGSTKIIQTHGHLFDINFNFQ 92
>d1usha2 d.159.1.2 (A:26-362) 5'-nucleotidase (syn. UDP-sugar
hydrolase), N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 337
Score = 26.5 bits (57), Expect = 4.7
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 15 EYDDRNTIRIMIASDIHLGYLETDRERGNDSFVS--FEEILEQALDQEVDMVLL-GGDLF 71
E D I ++ +D H + + + + I ++ + ++LL GGD+
Sbjct: 2 EQDKTYKITVLHTNDHHGHFWRNEYGEYGLAAQKTLVDGIRKEVAAEGGSVLLLSGGDIN 61
Query: 72 H 72
Sbjct: 62 T 62
>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium
subunit QorM {Pseudomonas putida [TaxId: 303]}
Length = 176
Score = 25.6 bits (55), Expect = 6.8
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 9 VKQEEVEYDDRNTIRIMIASDIHLGYLETDRERG 42
+ +R + A+D G+ TD E G
Sbjct: 130 TLGATMYIASSAGVRSVSATDFMKGHYFTDLEAG 163
>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase
flavoprotein, N-terminal domain {Hydrogenophaga
pseudoflava [TaxId: 47421]}
Length = 177
Score = 25.1 bits (54), Expect = 9.3
Identities = 7/24 (29%), Positives = 8/24 (33%)
Query: 19 RNTIRIMIASDIHLGYLETDRERG 42
N R + A LG T E
Sbjct: 141 PNGRRTVPADGFFLGTYMTLLEEN 164
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.414
Gapped
Lambda K H
0.267 0.0489 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,182,735
Number of extensions: 56924
Number of successful extensions: 193
Number of sequences better than 10.0: 1
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 39
Length of query: 313
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 228
Effective length of database: 1,240,546
Effective search space: 282844488
Effective search space used: 282844488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.8 bits)