Query psy11948
Match_columns 167
No_of_seqs 156 out of 1870
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 23:02:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11948.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11948hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0340|consensus 99.9 3.1E-23 6.7E-28 164.1 5.4 65 1-66 6-70 (442)
2 KOG0330|consensus 99.9 4.5E-23 9.8E-28 164.7 5.4 64 2-66 61-124 (476)
3 KOG0338|consensus 99.9 4.6E-23 1E-27 169.4 2.9 65 2-67 181-245 (691)
4 KOG0346|consensus 99.9 3.1E-22 6.7E-27 162.1 4.1 64 3-67 20-83 (569)
5 KOG0331|consensus 99.8 4.4E-22 9.5E-27 165.9 4.7 64 3-67 92-155 (519)
6 PRK04837 ATP-dependent RNA hel 99.8 1.2E-21 2.7E-26 162.6 6.4 65 2-67 8-72 (423)
7 KOG0347|consensus 99.8 5.7E-22 1.2E-26 164.2 3.8 66 1-66 180-245 (731)
8 COG0513 SrmB Superfamily II DN 99.8 1.6E-21 3.6E-26 165.3 6.0 63 3-66 30-92 (513)
9 KOG0345|consensus 99.8 2.2E-21 4.9E-26 158.1 6.3 64 3-67 5-70 (567)
10 KOG0348|consensus 99.8 1.7E-21 3.6E-26 161.0 5.5 65 2-67 136-201 (708)
11 KOG0343|consensus 99.8 1.2E-21 2.5E-26 162.5 3.5 65 2-67 69-133 (758)
12 PRK10590 ATP-dependent RNA hel 99.8 4.1E-21 8.9E-26 160.9 6.3 64 2-66 1-64 (456)
13 PRK11776 ATP-dependent RNA hel 99.8 5.9E-21 1.3E-25 160.0 6.3 65 1-66 3-67 (460)
14 PTZ00110 helicase; Provisional 99.8 6.8E-21 1.5E-25 162.6 6.5 65 1-66 129-193 (545)
15 PLN00206 DEAD-box ATP-dependen 99.8 8.4E-21 1.8E-25 161.3 6.9 65 1-66 120-184 (518)
16 PRK04537 ATP-dependent RNA hel 99.8 1.8E-20 3.8E-25 160.8 6.2 64 2-66 9-72 (572)
17 KOG0328|consensus 99.8 2E-20 4.3E-25 144.7 5.2 65 1-66 26-90 (400)
18 PRK11634 ATP-dependent RNA hel 99.8 3.4E-20 7.3E-25 160.4 6.2 64 2-66 6-69 (629)
19 KOG0342|consensus 99.8 3.8E-20 8.3E-25 151.5 4.5 64 3-67 83-146 (543)
20 PRK11192 ATP-dependent RNA hel 99.8 1.3E-19 2.8E-24 150.8 6.1 64 2-66 1-64 (434)
21 KOG0326|consensus 99.8 4.4E-20 9.5E-25 144.9 0.9 63 3-66 86-148 (459)
22 PRK01297 ATP-dependent RNA hel 99.8 3.6E-19 7.7E-24 149.9 5.9 65 2-67 87-151 (475)
23 KOG0333|consensus 99.8 7.4E-19 1.6E-23 145.2 5.8 65 1-66 244-308 (673)
24 KOG0334|consensus 99.7 1.1E-18 2.3E-23 153.0 5.3 65 1-66 364-428 (997)
25 PTZ00424 helicase 45; Provisio 99.7 1.7E-18 3.7E-23 142.4 5.9 63 2-65 28-90 (401)
26 KOG0341|consensus 99.7 1.1E-18 2.3E-23 140.2 3.1 65 1-66 169-233 (610)
27 KOG0335|consensus 99.7 1.3E-18 2.8E-23 143.5 2.3 65 2-67 74-138 (482)
28 KOG0337|consensus 99.7 2.6E-18 5.7E-23 138.8 3.2 63 3-66 22-84 (529)
29 TIGR03817 DECH_helic helicase/ 99.7 1E-17 2.3E-22 147.3 6.4 62 4-66 14-77 (742)
30 KOG0336|consensus 99.7 9.1E-18 2E-22 135.6 2.8 64 2-66 219-283 (629)
31 KOG0344|consensus 99.6 1.3E-16 2.7E-21 133.2 4.8 64 2-66 132-199 (593)
32 cd00268 DEADc DEAD-box helicas 99.6 3.4E-16 7.3E-21 117.5 6.4 62 4-66 1-62 (203)
33 KOG0329|consensus 99.6 1.7E-16 3.8E-21 121.6 4.2 64 2-66 42-105 (387)
34 PRK02362 ski2-like helicase; P 99.6 2.2E-16 4.7E-21 139.3 5.4 64 2-66 1-65 (737)
35 KOG0327|consensus 99.6 4.9E-17 1.1E-21 130.0 1.0 63 2-65 26-88 (397)
36 KOG0339|consensus 99.6 1.2E-16 2.6E-21 131.9 2.1 65 1-66 222-286 (731)
37 KOG4284|consensus 99.6 3.1E-16 6.8E-21 132.5 3.8 64 2-66 25-88 (980)
38 PRK00254 ski2-like helicase; P 99.6 9.6E-16 2.1E-20 134.9 5.5 64 2-66 1-65 (720)
39 KOG0332|consensus 99.6 3.6E-16 7.7E-21 125.0 1.9 65 2-66 90-155 (477)
40 KOG0350|consensus 99.5 8.3E-15 1.8E-19 120.8 5.3 83 13-167 148-230 (620)
41 PRK01172 ski2-like helicase; P 99.5 1.7E-14 3.7E-19 126.2 5.3 63 2-66 1-63 (674)
42 PRK13767 ATP-dependent helicas 99.5 3.2E-14 7E-19 127.5 5.9 56 9-66 18-73 (876)
43 COG1201 Lhr Lhr-like helicases 99.4 4.9E-13 1.1E-17 117.4 5.8 57 9-67 8-64 (814)
44 TIGR00614 recQ_fam ATP-depende 99.3 9.2E-13 2E-17 111.0 3.9 43 19-62 6-48 (470)
45 PRK12899 secA preprotein trans 99.3 3.2E-12 6.9E-17 113.1 4.8 61 5-66 65-133 (970)
46 PRK11057 ATP-dependent DNA hel 99.2 8.5E-12 1.8E-16 108.2 5.4 55 7-62 7-62 (607)
47 TIGR01054 rgy reverse gyrase. 99.2 1.1E-11 2.3E-16 113.8 5.2 49 13-63 67-115 (1171)
48 PLN03137 ATP-dependent DNA hel 99.2 1.6E-11 3.5E-16 110.7 5.6 59 3-62 436-497 (1195)
49 PF00270 DEAD: DEAD/DEAH box h 99.2 1.4E-11 3.1E-16 89.3 3.2 40 26-66 1-40 (169)
50 PRK14701 reverse gyrase; Provi 99.2 2.9E-11 6.4E-16 113.4 5.4 47 12-60 67-114 (1638)
51 TIGR00580 mfd transcription-re 99.2 3.6E-11 7.7E-16 108.1 5.7 57 8-65 435-497 (926)
52 PRK09401 reverse gyrase; Revie 99.2 3.5E-11 7.5E-16 110.4 5.5 40 20-62 77-116 (1176)
53 TIGR00643 recG ATP-dependent D 99.1 4.8E-11 1E-15 103.9 5.2 52 12-64 224-280 (630)
54 COG1205 Distinct helicase fami 99.1 5.5E-11 1.2E-15 106.2 5.6 57 10-67 56-112 (851)
55 TIGR02621 cas3_GSU0051 CRISPR- 99.1 4.6E-11 9.9E-16 105.6 4.0 41 20-61 12-52 (844)
56 TIGR01389 recQ ATP-dependent D 99.1 6.6E-11 1.4E-15 102.4 4.3 47 15-62 3-50 (591)
57 PRK10689 transcription-repair 99.1 1.3E-10 2.8E-15 106.5 5.1 51 11-62 588-643 (1147)
58 PRK10917 ATP-dependent DNA hel 99.1 1.6E-10 3.4E-15 101.5 5.6 54 11-65 248-307 (681)
59 PRK12898 secA preprotein trans 99.0 2.5E-10 5.4E-15 98.9 3.5 42 20-65 100-141 (656)
60 KOG0349|consensus 98.9 3E-10 6.4E-15 93.2 1.9 66 1-67 1-66 (725)
61 PHA02558 uvsW UvsW helicase; P 98.7 1.3E-08 2.8E-13 86.7 3.6 35 22-57 112-146 (501)
62 COG1204 Superfamily II helicas 98.7 1.1E-08 2.5E-13 90.5 3.4 59 8-66 15-73 (766)
63 PRK05580 primosome assembly pr 98.6 4.7E-08 1E-12 86.0 5.6 39 24-62 144-184 (679)
64 PRK09200 preprotein translocas 98.6 2.7E-08 5.9E-13 88.0 3.4 43 20-66 75-117 (790)
65 PHA02653 RNA helicase NPH-II; 98.6 4.3E-08 9.4E-13 85.8 4.2 29 27-56 167-195 (675)
66 COG1202 Superfamily II helicas 98.6 9.7E-08 2.1E-12 81.0 5.7 63 4-66 196-258 (830)
67 TIGR01407 dinG_rel DnaQ family 98.6 8E-08 1.7E-12 86.5 5.1 54 9-63 231-287 (850)
68 KOG0952|consensus 98.5 5.6E-08 1.2E-12 86.7 3.2 48 20-67 106-153 (1230)
69 TIGR00963 secA preprotein tran 98.4 1.4E-07 3.1E-12 82.7 2.6 40 20-63 53-92 (745)
70 PRK07246 bifunctional ATP-depe 98.4 3.3E-07 7.1E-12 82.2 4.0 43 20-63 242-287 (820)
71 TIGR03714 secA2 accessory Sec 98.3 2.5E-07 5.5E-12 81.5 2.9 41 20-64 67-107 (762)
72 smart00487 DEXDc DEAD-like hel 98.3 6.2E-07 1.3E-11 65.5 3.8 48 19-66 3-50 (201)
73 TIGR03117 cas_csf4 CRISPR-asso 98.2 9.6E-07 2.1E-11 76.8 3.0 25 41-65 17-41 (636)
74 KOG0346|consensus 98.1 1.2E-06 2.6E-11 72.3 1.0 74 61-167 30-108 (569)
75 PRK11664 ATP-dependent RNA hel 98.1 2.7E-06 5.8E-11 76.3 3.2 24 40-63 20-43 (812)
76 KOG0347|consensus 98.0 2.9E-06 6.3E-11 71.8 1.8 90 52-167 183-278 (731)
77 KOG0333|consensus 98.0 4.7E-06 1E-10 70.2 2.7 110 27-167 193-337 (673)
78 KOG0331|consensus 98.0 3.4E-06 7.5E-11 71.4 1.8 74 61-167 102-180 (519)
79 KOG0338|consensus 97.9 2.3E-06 4.9E-11 71.9 0.5 73 59-167 190-267 (691)
80 PRK13104 secA preprotein trans 97.9 4.9E-06 1.1E-10 74.4 2.3 14 154-167 125-138 (896)
81 KOG0330|consensus 97.9 3.9E-06 8.4E-11 68.4 1.4 69 60-167 71-144 (476)
82 TIGR01970 DEAH_box_HrpB ATP-de 97.9 7.7E-06 1.7E-10 73.4 3.4 26 39-64 16-41 (819)
83 PRK13766 Hef nuclease; Provisi 97.9 8.8E-06 1.9E-10 72.7 3.7 42 21-64 12-53 (773)
84 COG1061 SSL2 DNA or RNA helica 97.9 9.1E-06 2E-10 68.3 3.1 35 23-57 35-72 (442)
85 KOG0343|consensus 97.9 3.3E-06 7.2E-11 71.5 0.2 65 68-167 88-156 (758)
86 smart00489 DEXDc3 DEAD-like he 97.8 2.2E-05 4.8E-10 62.5 3.5 42 24-66 8-53 (289)
87 smart00488 DEXDc2 DEAD-like he 97.8 2.2E-05 4.8E-10 62.5 3.5 42 24-66 8-53 (289)
88 KOG0348|consensus 97.7 8.9E-06 1.9E-10 68.7 0.8 75 60-167 145-226 (708)
89 KOG0345|consensus 97.7 1.1E-05 2.4E-10 67.1 1.4 66 68-167 25-94 (567)
90 PF04851 ResIII: Type III rest 97.7 1.7E-05 3.7E-10 57.7 2.2 35 24-58 3-43 (184)
91 COG0513 SrmB Superfamily II DN 97.7 6.4E-06 1.4E-10 70.5 -0.1 72 59-167 38-114 (513)
92 PRK04837 ATP-dependent RNA hel 97.6 1.2E-05 2.6E-10 67.0 -0.1 75 61-167 19-98 (423)
93 PLN00206 DEAD-box ATP-dependen 97.6 2E-05 4.3E-10 67.5 0.6 75 61-167 132-211 (518)
94 PTZ00110 helicase; Provisional 97.6 1.7E-05 3.7E-10 68.4 0.0 74 60-167 140-218 (545)
95 KOG0335|consensus 97.6 3.2E-05 7E-10 64.8 1.7 77 62-167 86-167 (482)
96 KOG0336|consensus 97.5 0.00015 3.3E-09 59.9 4.9 119 12-167 171-309 (629)
97 KOG0341|consensus 97.5 5.9E-05 1.3E-09 61.8 2.4 87 50-167 170-261 (610)
98 PRK11448 hsdR type I restricti 97.5 0.00014 2.9E-09 67.5 5.0 33 24-56 413-449 (1123)
99 KOG0342|consensus 97.5 5.1E-05 1.1E-09 63.5 1.5 72 61-167 93-169 (543)
100 PRK10590 ATP-dependent RNA hel 97.5 3E-05 6.4E-10 65.4 0.1 74 61-167 12-90 (456)
101 COG1201 Lhr Lhr-like helicases 97.4 3.3E-05 7.2E-10 68.8 -0.1 77 56-166 6-87 (814)
102 KOG0353|consensus 97.4 0.00029 6.2E-09 57.8 5.2 58 5-63 74-132 (695)
103 KOG0340|consensus 97.3 7E-05 1.5E-09 60.6 1.0 61 68-167 26-90 (442)
104 KOG0352|consensus 97.3 0.00019 4.1E-09 59.6 3.2 52 12-63 6-59 (641)
105 PRK08074 bifunctional ATP-depe 97.3 0.00024 5.1E-09 64.9 4.0 43 21-64 255-300 (928)
106 KOG0951|consensus 97.3 0.00027 5.9E-09 65.0 3.8 58 8-67 295-352 (1674)
107 KOG0337|consensus 97.2 0.00013 2.7E-09 60.3 1.5 80 50-167 21-105 (529)
108 PRK04537 ATP-dependent RNA hel 97.2 6.8E-05 1.5E-09 65.1 -0.1 75 61-167 20-99 (572)
109 TIGR03817 DECH_helic helicase/ 97.2 6.9E-05 1.5E-09 66.8 -0.1 69 59-167 22-96 (742)
110 PRK11776 ATP-dependent RNA hel 97.2 7.4E-05 1.6E-09 63.0 -0.1 68 61-167 15-87 (460)
111 KOG0354|consensus 97.2 0.00043 9.4E-09 61.0 4.4 37 24-62 62-98 (746)
112 COG4581 Superfamily II RNA hel 97.2 0.00054 1.2E-08 62.5 4.7 39 17-57 113-151 (1041)
113 PRK12904 preprotein translocas 97.2 0.00018 3.9E-09 64.4 1.6 38 21-62 79-116 (830)
114 TIGR03158 cas3_cyano CRISPR-as 97.2 0.0002 4.3E-09 58.7 1.7 36 28-63 1-37 (357)
115 PRK11192 ATP-dependent RNA hel 97.1 0.0001 2.3E-09 61.5 -0.1 72 61-167 12-88 (434)
116 PRK01297 ATP-dependent RNA hel 97.1 0.0001 2.2E-09 62.5 -0.3 75 61-167 98-177 (475)
117 PRK13767 ATP-dependent helicas 97.1 0.00011 2.5E-09 66.6 -0.0 78 57-167 17-99 (876)
118 PRK11634 ATP-dependent RNA hel 97.0 0.00014 3E-09 63.8 -0.2 69 60-167 16-89 (629)
119 COG0514 RecQ Superfamily II DN 97.0 0.00077 1.7E-08 58.3 4.2 50 13-63 5-55 (590)
120 KOG0334|consensus 97.0 0.00034 7.4E-09 63.1 2.0 73 61-167 376-453 (997)
121 PRK13107 preprotein translocas 97.0 0.00036 7.9E-09 62.7 1.7 14 154-167 125-138 (908)
122 KOG0344|consensus 96.9 0.00039 8.4E-09 59.3 1.5 72 62-167 148-224 (593)
123 KOG0351|consensus 96.9 0.0025 5.5E-08 58.1 6.3 50 12-62 251-301 (941)
124 KOG0326|consensus 96.9 0.00048 1E-08 55.3 1.5 69 60-167 95-168 (459)
125 TIGR00603 rad25 DNA repair hel 96.9 0.00092 2E-08 59.3 3.4 34 24-57 255-290 (732)
126 PTZ00424 helicase 45; Provisio 96.8 0.00028 6.2E-09 58.1 -0.3 69 60-167 38-111 (401)
127 PRK09694 helicase Cas3; Provis 96.7 0.0013 2.8E-08 59.7 3.5 39 22-61 284-322 (878)
128 COG1199 DinG Rad3-related DNA 96.7 0.0025 5.5E-08 56.0 4.7 48 19-66 10-60 (654)
129 KOG0328|consensus 96.6 0.0012 2.5E-08 52.3 1.8 69 60-167 37-110 (400)
130 KOG0350|consensus 96.6 0.001 2.2E-08 56.2 1.5 6 155-160 273-278 (620)
131 PRK11747 dinG ATP-dependent DN 96.6 0.0038 8.3E-08 55.5 5.1 43 21-64 23-73 (697)
132 COG1110 Reverse gyrase [DNA re 96.3 0.0074 1.6E-07 55.0 5.4 38 17-56 75-113 (1187)
133 KOG0339|consensus 96.3 0.0015 3.2E-08 55.4 0.8 93 41-167 211-311 (731)
134 KOG0349|consensus 96.3 0.003 6.5E-08 52.8 2.5 42 68-109 21-66 (725)
135 TIGR01587 cas3_core CRISPR-ass 96.2 0.0027 5.9E-08 51.6 2.1 25 42-66 1-25 (358)
136 TIGR00348 hsdR type I site-spe 96.1 0.0052 1.1E-07 54.4 3.6 17 151-167 292-308 (667)
137 KOG0327|consensus 96.1 0.0022 4.7E-08 52.4 1.0 69 60-167 36-109 (397)
138 TIGR00604 rad3 DNA repair heli 95.3 0.015 3.3E-07 51.8 3.4 46 21-66 7-55 (705)
139 cd00268 DEADc DEAD-box helicas 95.3 0.0044 9.6E-08 46.1 -0.0 63 68-167 18-84 (203)
140 PRK02362 ski2-like helicase; P 95.3 0.0042 9.2E-08 55.5 -0.4 58 68-167 20-82 (737)
141 COG1205 Distinct helicase fami 95.0 0.0066 1.4E-07 55.1 0.1 42 68-109 67-112 (851)
142 PF00580 UvrD-helicase: UvrD/R 95.0 0.027 5.9E-07 44.3 3.6 33 25-60 1-33 (315)
143 COG1111 MPH1 ERCC4-like helica 94.9 0.0094 2E-07 50.5 0.7 47 80-167 27-73 (542)
144 PRK00254 ski2-like helicase; P 94.7 0.0071 1.5E-07 54.0 -0.4 59 68-167 20-83 (720)
145 TIGR00614 recQ_fam ATP-depende 94.4 0.01 2.3E-07 50.3 -0.2 37 68-104 8-48 (470)
146 KOG0332|consensus 94.4 0.0081 1.8E-07 49.3 -0.9 69 60-167 100-175 (477)
147 PF00270 DEAD: DEAD/DEAH box h 94.3 0.01 2.3E-07 42.5 -0.3 47 81-167 13-59 (169)
148 COG1200 RecG RecG-like helicas 94.3 0.034 7.4E-07 48.8 2.7 58 7-65 245-308 (677)
149 KOG4284|consensus 94.2 0.028 6E-07 49.3 2.0 70 59-167 34-108 (980)
150 COG1198 PriA Primosomal protei 94.1 0.082 1.8E-06 47.2 4.8 38 24-61 198-238 (730)
151 PF13245 AAA_19: Part of AAA d 94.1 0.069 1.5E-06 33.9 3.2 15 42-56 12-26 (76)
152 PRK12899 secA preprotein trans 94.0 0.016 3.5E-07 52.7 0.1 29 80-108 105-133 (970)
153 smart00488 DEXDc2 DEAD-like he 93.6 0.019 4E-07 45.8 -0.1 30 80-109 25-54 (289)
154 smart00489 DEXDc3 DEAD-like he 93.6 0.019 4E-07 45.8 -0.1 30 80-109 25-54 (289)
155 PRK12906 secA preprotein trans 93.5 0.068 1.5E-06 48.1 3.2 42 21-66 78-119 (796)
156 PRK13833 conjugal transfer pro 93.5 0.083 1.8E-06 42.8 3.4 40 15-56 121-160 (323)
157 TIGR01587 cas3_core CRISPR-ass 93.3 0.024 5.3E-07 46.0 0.1 25 84-108 1-25 (358)
158 PRK09751 putative ATP-dependen 93.3 0.017 3.7E-07 55.2 -0.9 23 45-67 1-23 (1490)
159 PF13086 AAA_11: AAA domain; P 93.1 0.072 1.6E-06 39.8 2.4 31 25-56 2-33 (236)
160 TIGR02782 TrbB_P P-type conjug 93.1 0.1 2.2E-06 41.8 3.4 43 12-56 106-148 (299)
161 PF13604 AAA_30: AAA domain; P 92.9 0.12 2.6E-06 38.7 3.3 55 25-93 2-57 (196)
162 PRK13894 conjugal transfer ATP 92.9 0.12 2.5E-06 41.9 3.5 41 13-55 123-163 (319)
163 KOG0947|consensus 92.9 0.17 3.6E-06 46.4 4.6 36 19-56 293-328 (1248)
164 PRK11057 ATP-dependent DNA hel 92.7 0.03 6.5E-07 49.1 -0.3 37 68-104 22-62 (607)
165 PRK11747 dinG ATP-dependent DN 92.6 0.032 6.9E-07 49.8 -0.2 27 82-108 49-75 (697)
166 PF02562 PhoH: PhoH-like prote 92.6 0.065 1.4E-06 40.6 1.5 45 22-67 2-46 (205)
167 KOG1803|consensus 92.5 0.17 3.6E-06 44.1 4.0 55 24-92 185-239 (649)
168 COG4962 CpaF Flp pilus assembl 92.5 0.1 2.3E-06 42.5 2.6 37 20-56 153-189 (355)
169 TIGR01407 dinG_rel DnaQ family 92.4 0.037 7.9E-07 50.4 -0.1 28 80-107 262-289 (850)
170 TIGR01389 recQ ATP-dependent D 92.2 0.038 8.2E-07 48.2 -0.3 37 68-104 10-50 (591)
171 TIGR02768 TraA_Ti Ti-type conj 91.9 0.4 8.7E-06 43.2 5.9 69 9-92 338-406 (744)
172 TIGR00376 DNA helicase, putati 91.6 0.21 4.6E-06 44.1 3.7 34 24-57 157-190 (637)
173 COG0556 UvrB Helicase subunit 91.5 0.14 3.1E-06 44.0 2.5 33 24-56 12-48 (663)
174 PLN03137 ATP-dependent DNA hel 91.4 0.091 2E-06 49.0 1.3 37 68-104 457-497 (1195)
175 PRK13889 conjugal transfer rel 91.4 0.4 8.6E-06 44.5 5.3 36 20-56 343-378 (988)
176 PRK12326 preprotein translocas 91.4 0.15 3.3E-06 45.5 2.6 43 20-66 75-117 (764)
177 KOG0951|consensus 91.2 0.052 1.1E-06 50.8 -0.4 40 24-63 1143-1182(1674)
178 PRK01172 ski2-like helicase; P 91.1 0.059 1.3E-06 47.8 -0.2 54 72-167 23-80 (674)
179 PRK07246 bifunctional ATP-depe 91.0 0.063 1.4E-06 48.8 -0.1 45 80-167 262-306 (820)
180 COG5008 PilU Tfp pilus assembl 91.0 0.17 3.6E-06 40.2 2.2 16 42-57 129-144 (375)
181 PRK08074 bifunctional ATP-depe 91.0 0.065 1.4E-06 49.3 -0.0 28 80-107 274-301 (928)
182 PRK15483 type III restriction- 91.0 0.22 4.7E-06 45.9 3.2 77 22-105 5-82 (986)
183 TIGR03117 cas_csf4 CRISPR-asso 90.9 0.062 1.3E-06 47.4 -0.2 47 81-167 15-61 (636)
184 TIGR00604 rad3 DNA repair heli 90.7 0.12 2.7E-06 46.1 1.5 30 80-109 27-56 (705)
185 cd01130 VirB11-like_ATPase Typ 90.6 0.32 6.9E-06 35.9 3.4 33 24-56 9-41 (186)
186 TIGR02621 cas3_GSU0051 CRISPR- 90.2 0.079 1.7E-06 48.1 -0.2 33 72-104 16-53 (844)
187 COG1203 CRISPR-associated heli 90.0 0.34 7.3E-06 43.6 3.5 40 26-65 197-239 (733)
188 COG1197 Mfd Transcription-repa 89.9 0.61 1.3E-05 43.6 5.1 48 9-57 579-632 (1139)
189 PRK13826 Dtr system oriT relax 89.8 0.86 1.9E-05 42.8 6.0 49 7-56 365-413 (1102)
190 CHL00122 secA preprotein trans 89.7 0.22 4.7E-06 45.3 2.1 39 20-62 73-111 (870)
191 COG0514 RecQ Superfamily II DN 89.6 0.2 4.4E-06 43.7 1.8 26 79-104 29-54 (590)
192 KOG0952|consensus 89.4 0.12 2.7E-06 47.5 0.4 55 80-166 124-178 (1230)
193 PRK09751 putative ATP-dependen 89.3 0.077 1.7E-06 50.9 -1.1 24 87-110 1-24 (1490)
194 cd00046 DEXDc DEAD-like helica 89.2 0.17 3.8E-06 34.0 1.0 25 42-66 2-26 (144)
195 PRK12898 secA preprotein trans 89.2 0.095 2.1E-06 46.3 -0.5 53 71-167 103-159 (656)
196 PRK13103 secA preprotein trans 88.8 0.29 6.4E-06 44.7 2.3 40 24-66 82-121 (913)
197 PRK10436 hypothetical protein; 88.7 0.44 9.6E-06 40.6 3.2 31 27-57 204-235 (462)
198 KOG0949|consensus 88.5 0.76 1.6E-05 42.5 4.6 31 24-55 511-541 (1330)
199 TIGR01448 recD_rel helicase, p 88.2 0.92 2E-05 40.8 5.0 34 20-55 320-353 (720)
200 KOG0948|consensus 88.1 0.48 1E-05 42.5 3.1 37 24-61 129-165 (1041)
201 COG0630 VirB11 Type IV secreto 88.1 0.92 2E-05 36.6 4.5 35 22-56 125-159 (312)
202 COG2805 PilT Tfp pilus assembl 88.0 0.49 1.1E-05 38.2 2.8 16 42-57 127-142 (353)
203 TIGR01054 rgy reverse gyrase. 87.3 0.18 3.9E-06 47.6 0.0 55 71-167 78-136 (1171)
204 TIGR03819 heli_sec_ATPase heli 87.0 0.66 1.4E-05 37.9 3.1 42 13-56 153-194 (340)
205 TIGR02525 plasmid_TraJ plasmid 86.6 0.61 1.3E-05 38.6 2.8 17 41-57 150-166 (372)
206 COG1199 DinG Rad3-related DNA 86.5 0.19 4.1E-06 44.3 -0.2 28 81-108 33-60 (654)
207 PRK13900 type IV secretion sys 86.5 0.59 1.3E-05 38.0 2.6 26 31-56 151-176 (332)
208 PRK11664 ATP-dependent RNA hel 86.4 0.2 4.4E-06 45.5 -0.1 45 81-167 19-63 (812)
209 COG4889 Predicted helicase [Ge 86.4 0.41 8.9E-06 43.8 1.7 45 11-56 148-196 (1518)
210 PRK09401 reverse gyrase; Revie 86.3 0.18 4E-06 47.5 -0.5 55 71-167 80-138 (1176)
211 PRK10917 ATP-dependent DNA hel 86.3 0.2 4.4E-06 44.6 -0.2 43 83-167 283-325 (681)
212 PRK13851 type IV secretion sys 86.1 0.65 1.4E-05 38.0 2.7 26 31-56 153-178 (344)
213 KOG0352|consensus 86.0 0.44 9.6E-06 40.2 1.6 25 80-104 34-58 (641)
214 KOG0329|consensus 86.0 0.47 1E-05 37.5 1.7 69 60-167 52-125 (387)
215 KOG0925|consensus 85.9 1.9 4E-05 37.2 5.2 55 1-56 24-78 (699)
216 PHA02653 RNA helicase NPH-II; 85.9 0.34 7.3E-06 43.2 1.0 52 80-167 177-237 (675)
217 TIGR03158 cas3_cyano CRISPR-as 85.9 0.2 4.3E-06 41.0 -0.4 22 84-105 16-37 (357)
218 cd01126 TraG_VirD4 The TraG/Tr 85.7 0.43 9.4E-06 39.3 1.5 23 42-64 1-23 (384)
219 TIGR00631 uvrb excinuclease AB 85.2 0.88 1.9E-05 40.5 3.2 33 24-56 9-45 (655)
220 COG1204 Superfamily II helicas 84.9 0.27 5.8E-06 44.4 -0.1 47 80-167 45-91 (766)
221 PRK13764 ATPase; Provisional 84.8 0.73 1.6E-05 40.5 2.5 17 40-56 257-273 (602)
222 TIGR02524 dot_icm_DotB Dot/Icm 84.7 0.85 1.8E-05 37.5 2.7 17 41-57 135-151 (358)
223 KOG1802|consensus 84.6 0.97 2.1E-05 40.2 3.1 46 16-62 402-447 (935)
224 KOG2340|consensus 84.3 1 2.2E-05 39.0 3.0 45 22-67 214-261 (698)
225 PRK10536 hypothetical protein; 84.1 1.2 2.6E-05 35.0 3.2 45 20-65 55-99 (262)
226 TIGR00580 mfd transcription-re 84.0 0.3 6.5E-06 45.0 -0.2 44 82-167 472-515 (926)
227 TIGR02533 type_II_gspE general 84.0 1.3 2.7E-05 38.1 3.5 38 17-57 221-259 (486)
228 TIGR00595 priA primosomal prot 83.6 0.39 8.5E-06 41.3 0.4 18 44-61 1-18 (505)
229 PF02534 T4SS-DNA_transf: Type 83.4 0.62 1.3E-05 39.4 1.5 23 42-64 46-68 (469)
230 KOG0950|consensus 83.4 0.68 1.5E-05 42.4 1.7 57 9-66 207-266 (1008)
231 TIGR00643 recG ATP-dependent D 83.4 0.33 7.1E-06 42.9 -0.2 55 71-167 235-299 (630)
232 cd01129 PulE-GspE PulE/GspE Th 83.0 1.6 3.4E-05 34.3 3.5 39 16-57 58-97 (264)
233 PRK09200 preprotein translocas 82.9 0.34 7.4E-06 43.8 -0.3 53 71-167 78-134 (790)
234 TIGR01970 DEAH_box_HrpB ATP-de 82.3 0.4 8.7E-06 43.7 -0.1 45 81-167 16-60 (819)
235 COG1219 ClpX ATP-dependent pro 82.2 0.61 1.3E-05 38.0 0.9 16 41-56 98-113 (408)
236 PRK13880 conjugal transfer cou 82.2 0.86 1.9E-05 40.4 1.9 25 40-64 175-199 (636)
237 KOG1133|consensus 82.2 1.2 2.7E-05 39.6 2.8 43 24-66 15-60 (821)
238 TIGR01967 DEAH_box_HrpA ATP-de 82.0 1.4 3.1E-05 42.1 3.3 41 20-62 60-102 (1283)
239 COG4098 comFA Superfamily II D 81.7 2.5 5.4E-05 34.8 4.2 43 24-67 97-142 (441)
240 PF05970 PIF1: PIF1-like helic 81.6 1.9 4.1E-05 35.4 3.6 54 25-93 2-61 (364)
241 PF00437 T2SE: Type II/IV secr 81.6 0.9 1.9E-05 35.4 1.7 27 31-57 118-144 (270)
242 PF12775 AAA_7: P-loop contain 81.5 1 2.2E-05 35.6 1.9 25 32-56 25-49 (272)
243 COG2804 PulE Type II secretory 81.1 1.4 3.1E-05 37.7 2.8 31 26-56 243-274 (500)
244 PRK13850 type IV secretion sys 81.1 0.97 2.1E-05 40.3 1.8 25 40-64 139-163 (670)
245 TIGR02538 type_IV_pilB type IV 81.1 1.7 3.6E-05 38.0 3.3 38 17-57 295-333 (564)
246 KOG1132|consensus 81.0 0.81 1.8E-05 41.6 1.3 44 24-67 21-67 (945)
247 PRK10875 recD exonuclease V su 80.6 3.5 7.6E-05 36.5 5.1 30 26-56 154-183 (615)
248 PF07517 SecA_DEAD: SecA DEAD- 79.7 2.5 5.3E-05 33.4 3.5 43 20-66 74-116 (266)
249 PRK13897 type IV secretion sys 79.6 1.1 2.4E-05 39.5 1.7 27 39-65 157-183 (606)
250 PRK11131 ATP-dependent RNA hel 79.4 1.6 3.5E-05 41.6 2.8 32 29-62 78-109 (1294)
251 KOG0926|consensus 78.5 2.2 4.7E-05 38.9 3.1 34 22-56 242-287 (1172)
252 PRK14701 reverse gyrase; Provi 78.1 0.59 1.3E-05 45.7 -0.5 57 68-167 77-137 (1638)
253 PF12846 AAA_10: AAA-like doma 77.7 1.5 3.3E-05 34.0 1.9 26 41-67 2-27 (304)
254 COG4096 HsdR Type I site-speci 77.7 3.1 6.7E-05 37.8 3.9 33 24-56 165-201 (875)
255 TIGR02788 VirB11 P-type DNA tr 77.4 1.9 4.2E-05 34.5 2.4 24 33-56 137-160 (308)
256 PRK13876 conjugal transfer cou 77.1 1.6 3.4E-05 38.9 1.9 27 39-65 143-169 (663)
257 TIGR00963 secA preprotein tran 77.1 0.7 1.5E-05 41.6 -0.3 34 71-104 56-91 (745)
258 smart00382 AAA ATPases associa 76.9 1.3 2.7E-05 29.6 1.1 16 41-56 3-18 (148)
259 PF01078 Mg_chelatase: Magnesi 76.7 2.1 4.5E-05 32.5 2.2 27 30-56 12-38 (206)
260 PRK13104 secA preprotein trans 76.2 0.66 1.4E-05 42.5 -0.6 24 86-109 99-122 (896)
261 PF04851 ResIII: Type III rest 76.2 0.89 1.9E-05 32.5 0.1 21 81-101 24-44 (184)
262 COG0606 Predicted ATPase with 76.1 2.3 5E-05 36.3 2.6 26 31-56 189-214 (490)
263 PRK05973 replicative DNA helic 75.6 2.3 4.9E-05 33.0 2.3 49 6-56 22-80 (237)
264 TIGR03714 secA2 accessory Sec 75.4 0.82 1.8E-05 41.3 -0.3 55 71-167 70-126 (762)
265 TIGR02767 TraG-Ti Ti-type conj 74.6 2 4.3E-05 38.1 1.9 26 39-64 210-235 (623)
266 cd01131 PilT Pilus retraction 74.1 1.5 3.3E-05 32.7 0.9 15 43-57 4-18 (198)
267 PRK13822 conjugal transfer cou 73.3 2.3 4.9E-05 37.8 1.9 56 39-94 223-286 (641)
268 PRK09183 transposase/IS protei 73.2 3.3 7.1E-05 32.4 2.6 18 39-56 101-118 (259)
269 TIGR02640 gas_vesic_GvpN gas v 73.0 2.9 6.4E-05 32.6 2.3 21 35-56 17-37 (262)
270 PRK10919 ATP-dependent DNA hel 71.8 3.4 7.5E-05 36.9 2.7 32 24-58 2-33 (672)
271 PRK13700 conjugal transfer pro 71.5 2.2 4.8E-05 38.3 1.5 53 11-65 157-209 (732)
272 PF13207 AAA_17: AAA domain; P 71.5 2.1 4.6E-05 28.7 1.1 13 43-55 2-14 (121)
273 PRK06526 transposase; Provisio 71.5 4.4 9.4E-05 31.7 3.0 19 38-56 96-114 (254)
274 PRK12902 secA preprotein trans 70.9 4 8.7E-05 37.6 2.9 40 21-64 83-122 (939)
275 PF13671 AAA_33: AAA domain; P 70.8 2.2 4.8E-05 29.4 1.1 14 43-56 2-15 (143)
276 PF00176 SNF2_N: SNF2 family N 70.6 2.8 6.1E-05 32.6 1.8 15 41-55 26-40 (299)
277 cd01363 Motor_domain Myosin an 70.6 4.1 8.8E-05 30.1 2.5 27 31-58 14-42 (186)
278 PRK04914 ATP-dependent helicas 70.5 5.3 0.00012 37.2 3.7 12 154-166 201-212 (956)
279 PRK05298 excinuclease ABC subu 70.4 3.7 8.1E-05 36.5 2.6 33 24-56 12-48 (652)
280 PF13238 AAA_18: AAA domain; P 70.4 2.3 5E-05 28.5 1.1 14 43-56 1-14 (129)
281 cd00009 AAA The AAA+ (ATPases 69.9 4.8 0.0001 27.0 2.6 16 40-55 19-34 (151)
282 TIGR03015 pepcterm_ATPase puta 69.5 4.9 0.00011 31.0 2.9 35 22-56 21-59 (269)
283 PF13401 AAA_22: AAA domain; P 68.6 2.6 5.5E-05 28.6 1.0 16 41-56 5-20 (131)
284 TIGR02785 addA_Gpos recombinat 68.2 4 8.6E-05 39.1 2.5 39 25-66 2-40 (1232)
285 PRK10689 transcription-repair 68.0 1.6 3.4E-05 41.4 -0.2 44 82-167 621-664 (1147)
286 PRK14712 conjugal transfer nic 67.8 5.7 0.00012 39.0 3.4 33 24-56 835-868 (1623)
287 PF00448 SRP54: SRP54-type pro 67.8 2.6 5.7E-05 31.6 1.0 15 42-56 3-17 (196)
288 PF10412 TrwB_AAD_bind: Type I 67.5 2.8 6E-05 34.8 1.2 32 34-67 10-41 (386)
289 KOG0745|consensus 67.5 2.7 5.9E-05 35.7 1.1 16 41-56 227-242 (564)
290 TIGR01420 pilT_fam pilus retra 67.4 2.4 5.1E-05 34.6 0.7 17 41-57 123-139 (343)
291 TIGR02760 TraI_TIGR conjugativ 67.0 6.6 0.00014 39.4 3.7 35 23-57 1018-1053(1960)
292 KOG0354|consensus 66.1 2.5 5.4E-05 38.0 0.6 47 81-167 75-121 (746)
293 TIGR01074 rep ATP-dependent DN 65.8 7.8 0.00017 34.3 3.7 32 25-59 2-33 (664)
294 PF07728 AAA_5: AAA domain (dy 65.6 3.3 7.2E-05 28.6 1.1 15 42-56 1-15 (139)
295 cd01126 TraG_VirD4 The TraG/Tr 65.5 3.6 7.9E-05 33.9 1.5 22 85-106 2-23 (384)
296 PF01695 IstB_IS21: IstB-like 65.3 4.8 0.0001 29.6 2.0 38 19-56 21-63 (178)
297 cd01127 TrwB Bacterial conjuga 64.9 4 8.8E-05 34.1 1.7 54 11-66 13-67 (410)
298 PRK13894 conjugal transfer ATP 64.7 3.9 8.6E-05 33.1 1.5 25 80-105 146-170 (319)
299 PRK08181 transposase; Validate 64.7 6.3 0.00014 31.1 2.6 30 26-55 89-121 (269)
300 cd01369 KISc_KHC_KIF5 Kinesin 64.6 6.4 0.00014 31.7 2.7 25 33-57 69-94 (325)
301 PRK13709 conjugal transfer nic 64.4 7.8 0.00017 38.5 3.6 33 24-56 967-1000(1747)
302 cd01381 MYSc_type_VII Myosin m 64.2 17 0.00037 32.6 5.5 55 3-57 42-103 (671)
303 PF02534 T4SS-DNA_transf: Type 64.1 3.9 8.5E-05 34.5 1.5 23 83-105 45-67 (469)
304 smart00487 DEXDc DEAD-like hel 64.1 2.1 4.6E-05 30.5 -0.1 26 83-108 25-50 (201)
305 PF00004 AAA: ATPase family as 64.1 3.3 7.1E-05 27.8 0.8 14 43-56 1-14 (132)
306 KOG0733|consensus 63.9 3.1 6.8E-05 36.8 0.8 49 3-55 188-238 (802)
307 cd01368 KISc_KIF23_like Kinesi 63.3 6.5 0.00014 32.1 2.5 25 34-58 82-107 (345)
308 cd01365 KISc_KIF1A_KIF1B Kines 63.0 7.3 0.00016 31.9 2.8 24 34-58 82-107 (356)
309 cd01380 MYSc_type_V Myosin mot 62.9 16 0.00034 33.0 5.0 55 4-58 43-104 (691)
310 cd01376 KISc_KID_like Kinesin 62.8 7.6 0.00016 31.3 2.8 25 33-58 73-99 (319)
311 PRK11131 ATP-dependent RNA hel 62.8 2.9 6.4E-05 40.0 0.5 22 81-104 88-109 (1294)
312 cd01373 KISc_KLP2_like Kinesin 62.8 6.8 0.00015 31.8 2.6 24 34-58 68-93 (337)
313 PF13555 AAA_29: P-loop contai 62.1 3.7 8E-05 25.0 0.7 16 41-56 24-39 (62)
314 PRK14729 miaA tRNA delta(2)-is 62.1 3.9 8.4E-05 32.9 1.0 15 42-56 6-20 (300)
315 cd01370 KISc_KIP3_like Kinesin 61.7 9.1 0.0002 31.1 3.1 23 35-57 82-105 (338)
316 PF09439 SRPRB: Signal recogni 61.5 3.5 7.5E-05 30.7 0.6 18 41-58 4-21 (181)
317 PRK11054 helD DNA helicase IV; 61.0 14 0.00031 33.1 4.5 35 21-58 193-227 (684)
318 PF01935 DUF87: Domain of unkn 60.9 4.3 9.3E-05 30.7 1.0 25 41-66 24-48 (229)
319 COG1484 DnaC DNA replication p 60.7 4.6 9.9E-05 31.6 1.2 42 15-56 74-121 (254)
320 PRK13880 conjugal transfer cou 60.6 8.9 0.00019 34.1 3.1 24 83-106 176-199 (636)
321 PRK13897 type IV secretion sys 60.1 5.3 0.00012 35.3 1.6 24 83-106 159-182 (606)
322 KOG4150|consensus 59.7 13 0.00028 32.9 3.8 48 18-66 280-327 (1034)
323 cd01367 KISc_KIF2_like Kinesin 59.3 8.7 0.00019 31.0 2.6 25 34-58 78-103 (322)
324 COG1219 ClpX ATP-dependent pro 59.1 5.2 0.00011 32.8 1.2 64 24-98 49-113 (408)
325 PRK13850 type IV secretion sys 59.0 5.4 0.00012 35.7 1.5 24 83-106 140-163 (670)
326 TIGR01447 recD exodeoxyribonuc 58.7 8.5 0.00018 33.9 2.6 30 26-56 147-176 (586)
327 cd01375 KISc_KIF9_like Kinesin 58.2 8.7 0.00019 31.1 2.5 25 34-58 74-99 (334)
328 PRK12904 preprotein translocas 58.1 2.2 4.9E-05 38.9 -1.0 22 86-107 98-120 (830)
329 cd01374 KISc_CENP_E Kinesin mo 58.1 10 0.00022 30.6 2.8 25 34-58 67-92 (321)
330 PRK05580 primosome assembly pr 58.1 3 6.6E-05 37.3 -0.2 44 82-167 162-205 (679)
331 cd01385 MYSc_type_IX Myosin mo 57.9 25 0.00055 31.7 5.5 56 3-58 49-112 (692)
332 TIGR03238 dnd_assoc_3 dnd syst 57.7 9.4 0.0002 32.9 2.6 33 25-57 11-49 (504)
333 PF01580 FtsK_SpoIIIE: FtsK/Sp 57.5 5.1 0.00011 29.7 0.9 25 41-66 39-63 (205)
334 cd01384 MYSc_type_XI Myosin mo 56.6 24 0.00051 31.8 5.0 55 4-58 44-106 (674)
335 cd01372 KISc_KIF4 Kinesin moto 56.5 9.4 0.0002 30.9 2.4 23 35-58 68-92 (341)
336 PTZ00454 26S protease regulato 56.3 4.7 0.0001 33.7 0.6 17 40-56 179-195 (398)
337 PRK13107 preprotein translocas 55.9 3 6.5E-05 38.4 -0.6 25 85-109 98-122 (908)
338 PRK07261 topology modulation p 55.8 5.8 0.00013 28.8 1.0 15 42-56 2-16 (171)
339 PF03193 DUF258: Protein of un 55.8 19 0.00041 26.3 3.6 44 11-55 2-50 (161)
340 PF00225 Kinesin: Kinesin moto 55.4 9.1 0.0002 30.8 2.1 26 34-60 68-95 (335)
341 cd01377 MYSc_type_II Myosin mo 55.3 27 0.00058 31.5 5.2 55 4-58 48-109 (693)
342 cd01371 KISc_KIF3 Kinesin moto 55.2 11 0.00023 30.6 2.5 24 34-57 75-99 (333)
343 PHA02244 ATPase-like protein 55.2 12 0.00027 31.1 2.9 21 35-55 114-134 (383)
344 PRK13876 conjugal transfer cou 55.1 7.4 0.00016 34.8 1.7 25 83-107 145-169 (663)
345 PRK06921 hypothetical protein; 54.8 23 0.00049 27.8 4.2 16 40-55 117-132 (266)
346 cd00071 GMPK Guanosine monopho 54.6 6.5 0.00014 27.5 1.0 13 43-55 2-14 (137)
347 cd01120 RecA-like_NTPases RecA 54.4 6.1 0.00013 27.3 0.9 14 43-56 2-15 (165)
348 KOG1805|consensus 54.0 16 0.00036 34.0 3.6 47 9-59 658-704 (1100)
349 cd00124 MYSc Myosin motor doma 53.9 29 0.00064 31.1 5.2 55 3-57 42-103 (679)
350 TIGR02759 TraD_Ftype type IV c 53.8 7.3 0.00016 34.1 1.4 52 11-65 147-200 (566)
351 KOG2373|consensus 53.2 6.6 0.00014 32.6 1.0 30 29-58 256-291 (514)
352 cd01387 MYSc_type_XV Myosin mo 53.2 31 0.00066 31.1 5.2 54 4-57 44-104 (677)
353 PRK00091 miaA tRNA delta(2)-is 53.0 6.8 0.00015 31.6 1.0 15 42-56 6-20 (307)
354 cd01364 KISc_BimC_Eg5 Kinesin 53.0 11 0.00024 30.8 2.2 23 35-58 76-100 (352)
355 TIGR03499 FlhF flagellar biosy 52.9 6.5 0.00014 31.1 0.9 17 41-57 195-211 (282)
356 cd00106 KISc Kinesin motor dom 52.7 17 0.00036 29.2 3.3 25 33-58 71-97 (328)
357 smart00129 KISc Kinesin motor, 52.7 16 0.00034 29.5 3.1 25 34-58 73-98 (335)
358 smart00242 MYSc Myosin. Large 52.5 28 0.00061 31.2 4.9 54 4-57 49-109 (677)
359 TIGR01243 CDC48 AAA family ATP 52.4 8.6 0.00019 34.7 1.7 50 3-56 451-503 (733)
360 PRK11331 5-methylcytosine-spec 52.3 14 0.00029 31.6 2.7 27 29-56 184-210 (459)
361 PF13191 AAA_16: AAA ATPase do 52.3 7 0.00015 28.0 0.9 16 41-56 25-40 (185)
362 cd01378 MYSc_type_I Myosin mot 51.9 36 0.00078 30.6 5.4 55 4-58 43-104 (674)
363 PF05729 NACHT: NACHT domain 51.9 7.7 0.00017 27.0 1.1 15 42-56 2-16 (166)
364 PRK08118 topology modulation p 51.7 7.3 0.00016 28.2 0.9 15 42-56 3-17 (167)
365 TIGR01075 uvrD DNA helicase II 51.6 13 0.00028 33.5 2.6 33 23-58 3-35 (715)
366 TIGR03420 DnaA_homol_Hda DnaA 51.6 7.9 0.00017 28.9 1.1 16 41-56 39-54 (226)
367 TIGR01073 pcrA ATP-dependent D 51.5 11 0.00023 34.0 2.1 34 23-59 3-36 (726)
368 COG0324 MiaA tRNA delta(2)-iso 51.3 7.6 0.00017 31.4 1.1 14 43-56 6-19 (308)
369 cd01386 MYSc_type_XVIII Myosin 51.0 34 0.00074 31.3 5.2 54 4-57 43-103 (767)
370 cd01366 KISc_C_terminal Kinesi 51.0 15 0.00034 29.5 2.8 26 32-58 69-96 (329)
371 PRK06547 hypothetical protein; 50.9 12 0.00026 27.4 1.9 15 42-56 17-31 (172)
372 TIGR02767 TraG-Ti Ti-type conj 50.8 15 0.00032 32.7 2.8 22 83-104 212-233 (623)
373 cd01876 YihA_EngB The YihA (En 50.5 8.6 0.00019 26.5 1.1 14 42-55 1-14 (170)
374 KOG0924|consensus 50.4 17 0.00037 32.9 3.1 16 41-56 372-387 (1042)
375 PRK10078 ribose 1,5-bisphospho 50.1 8.3 0.00018 28.2 1.0 16 41-56 3-18 (186)
376 PRK12402 replication factor C 50.0 16 0.00035 29.0 2.8 15 42-56 38-52 (337)
377 PF00063 Myosin_head: Myosin h 50.0 16 0.00034 32.8 2.9 54 4-57 42-102 (689)
378 TIGR02881 spore_V_K stage V sp 49.7 8.2 0.00018 30.0 1.0 16 41-56 43-58 (261)
379 TIGR02880 cbbX_cfxQ probable R 49.7 8.3 0.00018 30.5 1.0 16 41-56 59-74 (284)
380 PF07724 AAA_2: AAA domain (Cd 49.5 8 0.00017 28.2 0.9 15 41-55 4-18 (171)
381 PRK11773 uvrD DNA-dependent he 49.4 13 0.00028 33.5 2.3 33 23-58 8-40 (721)
382 TIGR01313 therm_gnt_kin carboh 49.2 6.9 0.00015 27.8 0.5 14 43-56 1-14 (163)
383 TIGR02688 conserved hypothetic 49.1 23 0.0005 30.1 3.6 49 10-58 173-227 (449)
384 PRK13822 conjugal transfer cou 49.0 17 0.00037 32.4 3.0 22 83-104 225-246 (641)
385 PF00485 PRK: Phosphoribulokin 48.9 9.1 0.0002 28.2 1.1 13 43-55 2-14 (194)
386 COG1643 HrpA HrpA-like helicas 48.7 15 0.00032 33.9 2.6 35 32-66 57-91 (845)
387 PRK06620 hypothetical protein; 48.7 9.5 0.00021 28.9 1.2 16 41-56 45-60 (214)
388 COG3587 Restriction endonuclea 48.7 11 0.00023 34.8 1.6 23 82-104 74-96 (985)
389 PRK12903 secA preprotein trans 48.6 21 0.00045 33.1 3.4 42 21-66 76-117 (925)
390 PRK13766 Hef nuclease; Provisi 48.5 5.3 0.00011 36.1 -0.3 44 83-167 30-73 (773)
391 PRK08903 DnaA regulatory inact 48.2 10 0.00022 28.6 1.3 15 41-55 43-57 (227)
392 PRK08233 hypothetical protein; 48.1 9 0.00019 27.5 0.9 13 43-55 6-18 (182)
393 cd01122 GP4d_helicase GP4d_hel 48.0 3.1 6.7E-05 32.3 -1.7 45 11-56 2-46 (271)
394 KOG0738|consensus 48.0 11 0.00024 31.8 1.5 23 34-56 235-261 (491)
395 PRK13531 regulatory ATPase Rav 47.9 20 0.00043 31.0 3.1 21 35-56 35-55 (498)
396 cd01124 KaiC KaiC is a circadi 47.7 9.5 0.00021 27.5 1.0 14 43-56 2-15 (187)
397 KOG0060|consensus 47.7 9.2 0.0002 33.7 1.0 19 37-56 459-477 (659)
398 TIGR02760 TraI_TIGR conjugativ 47.4 23 0.0005 35.8 3.8 55 24-92 429-484 (1960)
399 PRK08727 hypothetical protein; 47.0 9.8 0.00021 29.1 1.0 15 41-55 42-56 (233)
400 TIGR01650 PD_CobS cobaltochela 46.7 23 0.0005 28.9 3.1 20 36-56 61-80 (327)
401 PF14532 Sigma54_activ_2: Sigm 46.7 19 0.00041 24.9 2.4 19 38-56 19-37 (138)
402 PRK00131 aroK shikimate kinase 46.5 9 0.0002 27.1 0.7 16 41-56 5-20 (175)
403 COG4185 Uncharacterized protei 46.4 11 0.00025 27.7 1.2 18 43-60 5-22 (187)
404 COG1111 MPH1 ERCC4-like helica 46.3 23 0.0005 30.7 3.1 41 24-66 15-55 (542)
405 TIGR00174 miaA tRNA isopenteny 46.3 10 0.00022 30.3 1.0 14 43-56 2-15 (287)
406 TIGR02322 phosphon_PhnN phosph 46.2 9.9 0.00021 27.4 0.9 17 41-57 2-18 (179)
407 KOG0090|consensus 46.2 15 0.00033 28.3 1.9 21 39-59 37-57 (238)
408 PHA02558 uvsW UvsW helicase; P 46.1 7.5 0.00016 33.4 0.3 21 80-100 127-147 (501)
409 PRK12377 putative replication 46.0 26 0.00056 27.3 3.3 16 40-55 101-116 (248)
410 PF04665 Pox_A32: Poxvirus A32 45.6 13 0.00028 29.0 1.5 25 37-62 10-34 (241)
411 PF12340 DUF3638: Protein of u 45.5 51 0.0011 25.5 4.7 63 2-67 3-67 (229)
412 PRK00300 gmk guanylate kinase; 45.4 12 0.00026 27.6 1.2 15 41-55 6-20 (205)
413 PF00005 ABC_tran: ABC transpo 45.3 12 0.00027 25.4 1.2 15 41-55 12-26 (137)
414 COG1126 GlnQ ABC-type polar am 45.1 11 0.00023 29.2 1.0 15 41-55 29-43 (240)
415 PRK14722 flhF flagellar biosyn 44.9 11 0.00023 31.4 1.0 18 41-58 138-155 (374)
416 TIGR03263 guanyl_kin guanylate 44.8 12 0.00026 26.9 1.2 15 41-55 2-16 (180)
417 cd02023 UMPK Uridine monophosp 44.7 11 0.00023 27.8 0.9 14 43-56 2-15 (198)
418 PRK06217 hypothetical protein; 44.6 11 0.00023 27.5 0.9 15 42-56 3-17 (183)
419 PRK06762 hypothetical protein; 44.5 11 0.00024 26.8 0.9 14 42-55 4-17 (166)
420 PRK14737 gmk guanylate kinase; 44.5 11 0.00025 27.8 1.0 15 41-55 5-19 (186)
421 TIGR02562 cas3_yersinia CRISPR 44.5 22 0.00048 33.6 3.0 34 24-57 408-448 (1110)
422 PRK14531 adenylate kinase; Pro 44.2 12 0.00025 27.4 1.1 16 41-56 3-18 (183)
423 PRK06893 DNA replication initi 44.0 12 0.00026 28.6 1.1 14 42-55 41-54 (229)
424 PRK05480 uridine/cytidine kina 44.0 11 0.00024 28.0 0.9 16 41-56 7-22 (209)
425 PRK08084 DNA replication initi 43.9 13 0.00027 28.5 1.2 15 41-55 46-60 (235)
426 PF13476 AAA_23: AAA domain; P 43.9 11 0.00024 27.2 0.9 16 42-57 21-36 (202)
427 cd02019 NK Nucleoside/nucleoti 43.8 13 0.00028 22.6 1.0 13 43-55 2-14 (69)
428 KOG0246|consensus 43.5 19 0.0004 31.7 2.2 25 33-57 284-309 (676)
429 cd02028 UMPK_like Uridine mono 43.5 11 0.00025 27.5 0.9 13 43-55 2-14 (179)
430 PTZ00301 uridine kinase; Provi 43.4 11 0.00024 28.5 0.9 14 43-56 6-19 (210)
431 PRK14530 adenylate kinase; Pro 42.9 13 0.00028 27.9 1.1 16 41-56 4-19 (215)
432 PRK05342 clpX ATP-dependent pr 42.9 13 0.00027 31.3 1.1 16 41-56 109-124 (412)
433 TIGR00235 udk uridine kinase. 42.7 12 0.00026 27.9 0.9 14 42-55 8-21 (207)
434 cd00227 CPT Chloramphenicol (C 42.6 13 0.00028 26.8 1.1 16 41-56 3-18 (175)
435 PLN02165 adenylate isopentenyl 42.5 12 0.00026 30.6 1.0 17 41-57 44-60 (334)
436 PRK05642 DNA replication initi 42.3 13 0.00029 28.4 1.1 15 41-55 46-60 (234)
437 CHL00181 cbbX CbbX; Provisiona 42.1 13 0.00027 29.6 1.0 16 41-56 60-75 (287)
438 PF08477 Miro: Miro-like prote 42.1 14 0.0003 24.4 1.0 13 43-55 2-14 (119)
439 TIGR01360 aden_kin_iso1 adenyl 42.0 13 0.00028 26.8 1.0 15 42-56 5-19 (188)
440 cd02021 GntK Gluconate kinase 41.5 13 0.00029 25.8 1.0 14 43-56 2-15 (150)
441 PRK07952 DNA replication prote 41.5 31 0.00068 26.8 3.1 16 41-56 100-115 (244)
442 KOG0922|consensus 41.4 25 0.00054 31.4 2.7 19 37-55 63-81 (674)
443 COG1137 YhbG ABC-type (unclass 41.4 16 0.00035 28.1 1.4 19 41-59 31-49 (243)
444 KOG0920|consensus 41.3 25 0.00055 32.7 2.8 41 25-66 173-214 (924)
445 TIGR03689 pup_AAA proteasome A 41.0 11 0.00025 32.6 0.6 15 41-55 217-231 (512)
446 TIGR02858 spore_III_AA stage I 40.8 20 0.00044 28.3 2.0 26 31-56 100-127 (270)
447 PRK12723 flagellar biosynthesi 40.7 13 0.00027 31.1 0.8 17 41-57 175-191 (388)
448 TIGR03743 SXT_TraD conjugative 40.7 19 0.00042 32.1 2.0 25 41-66 177-201 (634)
449 PRK12727 flagellar biosynthesi 40.7 50 0.0011 29.0 4.4 17 41-57 351-367 (559)
450 COG0714 MoxR-like ATPases [Gen 40.5 23 0.0005 28.5 2.3 22 34-56 38-59 (329)
451 cd00464 SK Shikimate kinase (S 40.5 15 0.00032 25.5 1.1 15 42-56 1-15 (154)
452 cd02020 CMPK Cytidine monophos 40.3 15 0.00033 25.2 1.1 14 43-56 2-15 (147)
453 cd01383 MYSc_type_VIII Myosin 40.1 26 0.00056 31.5 2.7 55 4-58 51-110 (677)
454 PRK03992 proteasome-activating 40.1 15 0.00033 30.4 1.2 16 41-56 166-181 (389)
455 COG1419 FlhF Flagellar GTP-bin 40.1 14 0.00031 31.0 1.0 17 41-57 204-220 (407)
456 PLN03188 kinesin-12 family pro 40.1 18 0.0004 34.6 1.8 24 35-58 160-184 (1320)
457 COG1136 SalX ABC-type antimicr 40.0 15 0.00032 28.4 1.0 15 41-55 32-46 (226)
458 TIGR01243 CDC48 AAA family ATP 40.0 13 0.00028 33.6 0.8 16 41-56 213-228 (733)
459 TIGR00382 clpX endopeptidase C 39.9 14 0.00031 31.0 1.1 16 41-56 117-132 (413)
460 COG5022 Myosin heavy chain [Cy 39.7 59 0.0013 31.8 5.0 55 2-56 107-168 (1463)
461 PRK08356 hypothetical protein; 39.6 14 0.00031 27.2 0.9 16 41-56 6-21 (195)
462 cd01379 MYSc_type_III Myosin m 39.5 53 0.0012 29.4 4.5 55 3-57 42-103 (653)
463 TIGR02928 orc1/cdc6 family rep 39.3 15 0.00033 29.6 1.1 16 41-56 41-56 (365)
464 PRK06835 DNA replication prote 39.3 26 0.00057 28.5 2.4 17 39-55 182-198 (329)
465 PF06745 KaiC: KaiC; InterPro 39.2 17 0.00036 27.4 1.2 16 41-56 20-35 (226)
466 TIGR01359 UMP_CMP_kin_fam UMP- 39.2 15 0.00032 26.5 1.0 14 43-56 2-15 (183)
467 PRK13851 type IV secretion sys 39.1 14 0.0003 30.3 0.8 18 80-97 160-177 (344)
468 cd01382 MYSc_type_VI Myosin mo 39.0 25 0.00054 31.8 2.5 54 4-57 47-108 (717)
469 PF00625 Guanylate_kin: Guanyl 39.0 16 0.00035 26.6 1.1 16 41-56 3-18 (183)
470 TIGR00150 HI0065_YjeE ATPase, 39.0 25 0.00055 24.7 2.0 19 37-55 19-37 (133)
471 COG1220 HslU ATP-dependent pro 38.9 15 0.00032 30.6 0.9 25 25-55 41-65 (444)
472 PF02463 SMC_N: RecF/RecN/SMC 38.9 17 0.00037 27.1 1.2 16 41-56 25-40 (220)
473 COG1203 CRISPR-associated heli 38.7 9.7 0.00021 34.4 -0.1 25 84-108 216-240 (733)
474 PRK05541 adenylylsulfate kinas 38.7 15 0.00033 26.4 1.0 16 41-56 8-23 (176)
475 PRK00411 cdc6 cell division co 38.4 16 0.00035 29.9 1.1 16 41-56 56-71 (394)
476 TIGR00376 DNA helicase, putati 38.3 17 0.00037 32.3 1.3 16 83-98 174-189 (637)
477 COG1875 NYN ribonuclease and A 38.1 34 0.00073 28.7 2.8 48 20-67 224-272 (436)
478 KOG0242|consensus 38.0 28 0.00061 31.3 2.6 25 34-58 80-105 (675)
479 cd01428 ADK Adenylate kinase ( 37.8 16 0.00035 26.5 0.9 14 43-56 2-15 (194)
480 PRK14532 adenylate kinase; Pro 37.7 17 0.00037 26.4 1.0 15 42-56 2-16 (188)
481 PRK13900 type IV secretion sys 37.6 16 0.00035 29.7 1.0 17 81-97 159-175 (332)
482 TIGR01242 26Sp45 26S proteasom 37.3 17 0.00037 29.7 1.1 16 41-56 157-172 (364)
483 PLN02796 D-glycerate 3-kinase 37.3 38 0.00082 27.9 3.0 14 43-56 103-116 (347)
484 COG1474 CDC6 Cdc6-related prot 37.2 16 0.00035 30.2 0.9 15 42-56 44-58 (366)
485 PF07088 GvpD: GvpD gas vesicl 37.1 23 0.0005 30.0 1.8 26 40-66 10-35 (484)
486 PF04548 AIG1: AIG1 family; I 36.9 17 0.00037 27.3 1.0 14 42-55 2-15 (212)
487 COG0419 SbcC ATPase involved i 36.9 15 0.00033 34.0 0.8 15 42-56 27-41 (908)
488 PF00158 Sigma54_activat: Sigm 36.8 30 0.00065 25.1 2.2 17 40-56 22-38 (168)
489 PF06068 TIP49: TIP49 C-termin 36.7 19 0.00042 30.1 1.3 16 40-55 50-65 (398)
490 KOG0742|consensus 36.5 17 0.00036 31.1 0.9 47 4-56 354-400 (630)
491 cd00820 PEPCK_HprK Phosphoenol 36.4 16 0.00035 24.7 0.7 19 41-59 16-34 (107)
492 KOG1803|consensus 36.4 24 0.00052 31.2 1.8 24 83-107 202-225 (649)
493 KOG0744|consensus 36.3 4.3 9.3E-05 33.3 -2.5 15 41-55 178-192 (423)
494 cd00984 DnaB_C DnaB helicase C 36.2 19 0.00041 27.3 1.1 16 41-56 14-29 (242)
495 COG3587 Restriction endonuclea 36.1 21 0.00047 32.9 1.6 23 41-63 75-97 (985)
496 PF09288 UBA_3: Fungal ubiquit 36.1 20 0.00043 21.3 0.9 16 8-23 7-22 (55)
497 cd04159 Arl10_like Arl10-like 35.9 21 0.00045 24.2 1.2 15 42-56 1-15 (159)
498 PRK05703 flhF flagellar biosyn 35.9 18 0.00039 30.5 1.0 17 41-57 222-238 (424)
499 PF01745 IPT: Isopentenyl tran 35.8 19 0.00041 27.8 1.1 14 43-56 4-17 (233)
500 PRK13833 conjugal transfer pro 35.8 18 0.00038 29.5 0.9 19 80-98 142-160 (323)
No 1
>KOG0340|consensus
Probab=99.88 E-value=3.1e-23 Score=164.12 Aligned_cols=65 Identities=35% Similarity=0.595 Sum_probs=61.8
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
+..|+.|||++|+.+.|+.+|+..|||||..|||.++.| +|+|.+|.||||||.+|.+|+++++.
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeG-rdcig~AkTGsGKT~AFaLPil~rLs 70 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEG-RDCIGCAKTGSGKTAAFALPILNRLS 70 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcc-cccccccccCCCcchhhhHHHHHhhc
Confidence 357999999999999999999999999999999999999 99999999999999999999988876
No 2
>KOG0330|consensus
Probab=99.87 E-value=4.5e-23 Score=164.74 Aligned_cols=64 Identities=42% Similarity=0.699 Sum_probs=61.3
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 2 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
.+|.+|++++.+++++...||..||+||+++||.++.| +|||+.|.||||||.+|.+|++++++
T Consensus 61 ~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g-~dvIglAeTGSGKT~afaLPIl~~LL 124 (476)
T KOG0330|consen 61 KSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGG-RDVIGLAETGSGKTGAFALPILQRLL 124 (476)
T ss_pred cchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCC-CcEEEEeccCCCchhhhHHHHHHHHH
Confidence 47999999999999999999999999999999999999 99999999999999999999999888
No 3
>KOG0338|consensus
Probab=99.87 E-value=4.6e-23 Score=169.40 Aligned_cols=65 Identities=42% Similarity=0.689 Sum_probs=62.3
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhhc
Q psy11948 2 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67 (167)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~~ 67 (167)
.+|.+|+|+..|++++..+||..|||||..+||..+.| +|++.||.||||||-+|++|+|.+++.
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallg-kDIca~A~TGsGKTAAF~lPiLERLlY 245 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLG-KDICACAATGSGKTAAFALPILERLLY 245 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhc-chhhheecccCCchhhhHHHHHHHHhc
Confidence 47999999999999999999999999999999999999 999999999999999999999999883
No 4
>KOG0346|consensus
Probab=99.85 E-value=3.1e-22 Score=162.09 Aligned_cols=64 Identities=39% Similarity=0.660 Sum_probs=62.0
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhhc
Q psy11948 3 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67 (167)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~~ 67 (167)
+|++|+|++.|++++.+.||+.||-||..+||.++.| +|+++.|.||||||.+|++|+++.++.
T Consensus 20 tFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEg-KDvvarArTGSGKT~AYliPllqkll~ 83 (569)
T KOG0346|consen 20 TFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEG-KDVVARARTGSGKTAAYLIPLLQKLLA 83 (569)
T ss_pred cHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcC-cceeeeeccCCCchHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999 899999999999999999999999884
No 5
>KOG0331|consensus
Probab=99.85 E-value=4.4e-22 Score=165.94 Aligned_cols=64 Identities=41% Similarity=0.697 Sum_probs=61.2
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhhc
Q psy11948 3 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67 (167)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~~ 67 (167)
.|++++|++++..+|+..||..|||||.++||.++.| +|+++.|.||||||++|++|.+.++..
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~G-rD~v~iA~TGSGKTLay~lP~i~~l~~ 155 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSG-RDLVGIARTGSGKTLAYLLPAIVHLNN 155 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccC-CceEEEeccCCcchhhhhhHHHHHHHh
Confidence 4889999999999999999999999999999999999 999999999999999999999988873
No 6
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.85 E-value=1.2e-21 Score=162.58 Aligned_cols=65 Identities=32% Similarity=0.603 Sum_probs=61.9
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhhc
Q psy11948 2 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67 (167)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~~ 67 (167)
++|++|+|+++++++|.+.||..|||+|+++||.++.| +|++++|+||||||++|++|++..+..
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g-~dvi~~ApTGsGKTla~llp~l~~l~~ 72 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAG-RDVAGQAQTGTGKTMAFLTATFHYLLS 72 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CcEEEECCCCchHHHHHHHHHHHHHHh
Confidence 48999999999999999999999999999999999999 999999999999999999999988763
No 7
>KOG0347|consensus
Probab=99.84 E-value=5.7e-22 Score=164.17 Aligned_cols=66 Identities=53% Similarity=0.927 Sum_probs=59.7
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
|+.|.+|.||.+++++|..+||..||+||..+||++..|..||++.|.||||||+||.+|++..+.
T Consensus 180 vsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~ 245 (731)
T KOG0347|consen 180 VSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLL 245 (731)
T ss_pred hHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhh
Confidence 467999999999999999999999999999999999999889998888888888888888877555
No 8
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1.6e-21 Score=165.27 Aligned_cols=63 Identities=38% Similarity=0.702 Sum_probs=60.5
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 3 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
.|++|+|++.++++|.++||..|||||..+||.++.| +|++++|+||||||++|.+|+++.+.
T Consensus 30 ~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g-~Dvi~~A~TGsGKT~Af~lP~l~~l~ 92 (513)
T COG0513 30 EFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAG-RDVLGQAQTGTGKTAAFLLPLLQKIL 92 (513)
T ss_pred CHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHHh
Confidence 6999999999999999999999999999999999999 99999999999999999999998855
No 9
>KOG0345|consensus
Probab=99.84 E-value=2.2e-21 Score=158.10 Aligned_cols=64 Identities=38% Similarity=0.542 Sum_probs=60.2
Q ss_pred ccccCC--CCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhhc
Q psy11948 3 EWVKFN--IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67 (167)
Q Consensus 3 ~f~~l~--l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~~ 67 (167)
+|++|+ |++++++++..+||..+||+|..+||.++.+ +||++.|+||||||+||++|++..+++
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~-KDVvveavTGSGKTlAFllP~le~i~r 70 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKN-KDVVVEAVTGSGKTLAFLLPMLEIIYR 70 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcC-CceEEEcCCCCCchhhHHHHHHHHHHh
Confidence 799987 5599999999999999999999999999988 999999999999999999999998875
No 10
>KOG0348|consensus
Probab=99.84 E-value=1.7e-21 Score=161.01 Aligned_cols=65 Identities=29% Similarity=0.511 Sum_probs=61.5
Q ss_pred CccccCCCCHHHHHHHH-HCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhhc
Q psy11948 2 AEWVKFNIPETIIRALY-QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67 (167)
Q Consensus 2 ~~f~~l~l~~~l~~~l~-~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~~ 67 (167)
+.|.+|||++.+.+.|. .++|..||.||+++||.++.| +|+++.+.||||||++|++|+++.+..
T Consensus 136 ~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~g-rD~lV~aQTGSGKTLAYllPiVq~Lq~ 201 (708)
T KOG0348|consen 136 AAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEG-RDALVRAQTGSGKTLAYLLPIVQSLQA 201 (708)
T ss_pred ccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcC-cceEEEcCCCCcccHHHHHHHHHHHHh
Confidence 46999999999999999 589999999999999999998 999999999999999999999998884
No 11
>KOG0343|consensus
Probab=99.83 E-value=1.2e-21 Score=162.49 Aligned_cols=65 Identities=35% Similarity=0.608 Sum_probs=63.1
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhhc
Q psy11948 2 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67 (167)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~~ 67 (167)
..|++|+|+..+++.|++.+|..||.||+.+||..+.| +||++.|.||||||+||++|+|+++++
T Consensus 69 ~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G-~DvlGAAkTGSGKTLAFlvPvlE~L~r 133 (758)
T KOG0343|consen 69 KKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQG-HDVLGAAKTGSGKTLAFLVPVLEALYR 133 (758)
T ss_pred hhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccC-cccccccccCCCceeeehHHHHHHHHH
Confidence 57999999999999999999999999999999999999 999999999999999999999999996
No 12
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.83 E-value=4.1e-21 Score=160.90 Aligned_cols=64 Identities=31% Similarity=0.689 Sum_probs=61.4
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 2 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
|+|++|+|+++++++|.++||..|||+|.++||.++.| +|++++++||+|||++|++|++..+.
T Consensus 1 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g-~dvlv~apTGsGKTla~~lpil~~l~ 64 (456)
T PRK10590 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEG-RDLMASAQTGTGKTAGFTLPLLQHLI 64 (456)
T ss_pred CCHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCCcHHHHHHHHHHHHhh
Confidence 58999999999999999999999999999999999998 99999999999999999999988775
No 13
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.83 E-value=5.9e-21 Score=160.03 Aligned_cols=65 Identities=34% Similarity=0.617 Sum_probs=61.3
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
+++|++|+|++.++++|.++||..|||+|.++||.++.| +|++++|+||+|||++|.+|++..+.
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g-~dvi~~a~TGsGKT~a~~lpil~~l~ 67 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAG-KDVIAQAKTGSGKTAAFGLGLLQKLD 67 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC-CCEEEECCCCCcHHHHHHHHHHHHhh
Confidence 578999999999999999999999999999999999998 99999999999999999999987654
No 14
>PTZ00110 helicase; Provisional
Probab=99.83 E-value=6.8e-21 Score=162.63 Aligned_cols=65 Identities=42% Similarity=0.650 Sum_probs=61.5
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
+.+|++++|+++++++|.++||.+|||||.++||.++.| +|+|++++||||||++|++|++..+.
T Consensus 129 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G-~dvI~~ApTGSGKTlaylLP~l~~i~ 193 (545)
T PTZ00110 129 VVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSG-RDMIGIAETGSGKTLAFLLPAIVHIN 193 (545)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC-CCEEEEeCCCChHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999 99999999999999999999987765
No 15
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.83 E-value=8.4e-21 Score=161.27 Aligned_cols=65 Identities=31% Similarity=0.575 Sum_probs=61.9
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
|.+|++++|++.++++|.+.||..|||+|.++||.++.| +|++++++||||||++|++|++..+.
T Consensus 120 i~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g-~dviv~ApTGSGKTlayllPil~~l~ 184 (518)
T PLN00206 120 ILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSG-RSLLVSADTGSGKTASFLVPIISRCC 184 (518)
T ss_pred hcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CCEEEEecCCCCccHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999998 99999999999999999999988776
No 16
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.81 E-value=1.8e-20 Score=160.80 Aligned_cols=64 Identities=33% Similarity=0.618 Sum_probs=61.3
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 2 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
++|++|+|++.++++|.+.||..|||||.++||.++.| +|++++++||||||++|++|+++.+.
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G-~Dvi~~ApTGSGKTlafllpil~~l~ 72 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPG-GDVAGQAQTGTGKTLAFLVAVMNRLL 72 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEEcCCCCcHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999 99999999999999999999998876
No 17
>KOG0328|consensus
Probab=99.81 E-value=2e-20 Score=144.73 Aligned_cols=65 Identities=29% Similarity=0.667 Sum_probs=60.6
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
+.+|++|||.+++++.+++.||++|+.||+.+||.++.| +|||++|.+|+|||.+|.+.+++.+.
T Consensus 26 ~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkG-rdViaQaqSGTGKTa~~si~vlq~~d 90 (400)
T KOG0328|consen 26 IPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKG-RDVIAQAQSGTGKTATFSISVLQSLD 90 (400)
T ss_pred ccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcc-cceEEEecCCCCceEEEEeeeeeecc
Confidence 468999999999999999999999999999999999999 99999999999999999988876543
No 18
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.80 E-value=3.4e-20 Score=160.36 Aligned_cols=64 Identities=34% Similarity=0.675 Sum_probs=60.4
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 2 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
++|++|+|++.++++|.++||.+|||+|.++||.++.| +|++++|+||+|||++|.+|++..+.
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g-~dvl~~ApTGsGKT~af~lpll~~l~ 69 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNG-RDVLGMAQTGSGKTAAFSLPLLHNLD 69 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcC-CCEEEEcCCCCcHHHHHHHHHHHHhh
Confidence 57999999999999999999999999999999999988 99999999999999999999987654
No 19
>KOG0342|consensus
Probab=99.80 E-value=3.8e-20 Score=151.48 Aligned_cols=64 Identities=33% Similarity=0.531 Sum_probs=60.8
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhhc
Q psy11948 3 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67 (167)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~~ 67 (167)
.|.++.|++.++++|+++||..+|+||+.+||.++.| +|+++.|.||+|||+||++|.++.+++
T Consensus 83 ~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~g-kDvl~~AKTGtGKTlAFLiPaie~l~k 146 (543)
T KOG0342|consen 83 RFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEG-KDVLAAAKTGTGKTLAFLLPAIELLRK 146 (543)
T ss_pred HhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCC-ccceeeeccCCCceeeehhHHHHHHHh
Confidence 5788999999999999999999999999999999999 899999999999999999999998884
No 20
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.79 E-value=1.3e-19 Score=150.84 Aligned_cols=64 Identities=38% Similarity=0.704 Sum_probs=61.2
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 2 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
++|++|+|++.++++|.++||..||++|.++||.++.| +|++++++||+|||++|++|+++.+.
T Consensus 1 ~~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g-~d~l~~apTGsGKT~~~~lp~l~~l~ 64 (434)
T PRK11192 1 TTFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDG-RDVLGSAPTGTGKTAAFLLPALQHLL 64 (434)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999998 99999999999999999999988776
No 21
>KOG0326|consensus
Probab=99.77 E-value=4.4e-20 Score=144.91 Aligned_cols=63 Identities=35% Similarity=0.691 Sum_probs=59.8
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 3 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
.|+++.|..+|+..+.+.||++|+|||.++||.++.| +|+++.|.+|+|||-+|++|++..+.
T Consensus 86 efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtG-rdiLaRaKNGTGKT~a~~IP~Lekid 148 (459)
T KOG0326|consen 86 EFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTG-RDILARAKNGTGKTAAYCIPVLEKID 148 (459)
T ss_pred cHHHhhhhHHHHHHHHHhccCCCCCccccccceeecc-hhhhhhccCCCCCccceechhhhhcC
Confidence 6999999999999999999999999999999999999 99999999999999999999987765
No 22
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.77 E-value=3.6e-19 Score=149.88 Aligned_cols=65 Identities=34% Similarity=0.553 Sum_probs=61.5
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhhc
Q psy11948 2 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67 (167)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~~ 67 (167)
.+|.+++|++.++++|.+.||..||++|.++||.++.| +|++++++||||||++|++|++..+..
T Consensus 87 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G-~dvi~~apTGSGKTlay~lpil~~l~~ 151 (475)
T PRK01297 87 TRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAG-HDAIGRAQTGTGKTAAFLISIINQLLQ 151 (475)
T ss_pred CCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999999999999999 999999999999999999999988763
No 23
>KOG0333|consensus
Probab=99.76 E-value=7.4e-19 Score=145.16 Aligned_cols=65 Identities=40% Similarity=0.679 Sum_probs=62.2
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
|++|++.+||.++++.+.+.||..|||||.++||..+.. +|+|+.+.||||||.+|++|++..+.
T Consensus 244 lrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~-rD~igvaETgsGktaaf~ipLl~~Is 308 (673)
T KOG0333|consen 244 LRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQN-RDPIGVAETGSGKTAAFLIPLLIWIS 308 (673)
T ss_pred ccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhcc-CCeeeEEeccCCccccchhhHHHHHH
Confidence 579999999999999999999999999999999999998 99999999999999999999988776
No 24
>KOG0334|consensus
Probab=99.74 E-value=1.1e-18 Score=153.05 Aligned_cols=65 Identities=35% Similarity=0.739 Sum_probs=60.9
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
+.+|...|++..++..++++||..|||||.+|||++++| +|||++|.||||||++|+||++..+.
T Consensus 364 v~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsG-rdvIgvakTgSGKT~af~LPmirhi~ 428 (997)
T KOG0334|consen 364 VTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSG-RDVIGVAKTGSGKTLAFLLPMIRHIK 428 (997)
T ss_pred cchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccC-cceEEeeccCCccchhhhcchhhhhh
Confidence 468999999999999999999999999999999999999 99999999999999999999984443
No 25
>PTZ00424 helicase 45; Provisional
Probab=99.74 E-value=1.7e-18 Score=142.43 Aligned_cols=63 Identities=32% Similarity=0.547 Sum_probs=59.3
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhh
Q psy11948 2 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65 (167)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~ 65 (167)
.+|++|+|++.+.++|.+.||..|||+|.++|+.++.| +|++++++||+|||++|++|++..+
T Consensus 28 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~-~d~ii~apTGsGKT~~~~l~~l~~~ 90 (401)
T PTZ00424 28 DSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDG-YDTIGQAQSGTGKTATFVIAALQLI 90 (401)
T ss_pred CCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999999 9999999999999999999987654
No 26
>KOG0341|consensus
Probab=99.73 E-value=1.1e-18 Score=140.18 Aligned_cols=65 Identities=35% Similarity=0.635 Sum_probs=60.4
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
|.+|.+|++|..+++.|++.|+.+|||||-+.+|.+++| +|.|..|-||||||+.|.+|++--.+
T Consensus 169 IksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsG-RDmIGIAfTGSGKTlvFvLP~imf~L 233 (610)
T KOG0341|consen 169 IKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSG-RDMIGIAFTGSGKTLVFVLPVIMFAL 233 (610)
T ss_pred hhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeec-CceeeEEeecCCceEEEeHHHHHHHH
Confidence 468999999999999999999999999999999999999 99999999999999999999875444
No 27
>KOG0335|consensus
Probab=99.72 E-value=1.3e-18 Score=143.47 Aligned_cols=65 Identities=29% Similarity=0.514 Sum_probs=60.5
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhhc
Q psy11948 2 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67 (167)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~~ 67 (167)
..|++-.+.+.+..+++..||..|||||+.+||.+..| +|+++||+||||||.+|++|++..++.
T Consensus 74 ~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~G-rdl~acAqTGsGKT~aFLiPii~~~~~ 138 (482)
T KOG0335|consen 74 PTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGG-RDLMACAQTGSGKTAAFLIPIISYLLD 138 (482)
T ss_pred ccccccchhHHHhhccccccccCCCcceeeccceeecC-CceEEEccCCCcchHHHHHHHHHHHHh
Confidence 46787788999999999999999999999999998888 999999999999999999999998885
No 28
>KOG0337|consensus
Probab=99.72 E-value=2.6e-18 Score=138.79 Aligned_cols=63 Identities=41% Similarity=0.680 Sum_probs=60.3
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 3 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
+|.+|||+..++++|.+.||..|||||+++||.++.+ +|++..+.||||||.||++|+++++.
T Consensus 22 ~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~-~dvv~martgsgktaaf~ipm~e~Lk 84 (529)
T KOG0337|consen 22 GFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEG-RDVVGMARTGSGKTAAFLIPMIEKLK 84 (529)
T ss_pred CccccCCCHHHHHHHHHhhcCCCCchhcccccceeec-cccceeeecCCcchhhHHHHHHHHHh
Confidence 6999999999999999999999999999999999999 99999999999999999999988876
No 29
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.71 E-value=1e-17 Score=147.34 Aligned_cols=62 Identities=26% Similarity=0.394 Sum_probs=56.7
Q ss_pred cccCC--CCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 4 WVKFN--IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 4 f~~l~--l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
|..++ |++++.++|.+.||..||++|.++||.++.| +|++++++||||||++|.+|+++.+.
T Consensus 14 ~~~~~~~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G-~nvvv~apTGSGKTla~~LPiL~~l~ 77 (742)
T TIGR03817 14 TAPWPAWAHPDVVAALEAAGIHRPWQHQARAAELAHAG-RHVVVATGTASGKSLAYQLPVLSALA 77 (742)
T ss_pred cCCCCCcCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCC-CCEEEECCCCCcHHHHHHHHHHHHHh
Confidence 44443 8999999999999999999999999999999 99999999999999999999988765
No 30
>KOG0336|consensus
Probab=99.69 E-value=9.1e-18 Score=135.64 Aligned_cols=64 Identities=36% Similarity=0.573 Sum_probs=57.5
Q ss_pred Ccccc-CCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 2 AEWVK-FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 2 ~~f~~-l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
++|++ |.--+++++++++.||.+|||||.++||.+|.| .|+++.|.||+|||++|++|-+..+.
T Consensus 219 ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG-~DliGVAQTgtgKtL~~L~pg~ihi~ 283 (629)
T KOG0336|consen 219 CTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQG-IDLIGVAQTGTGKTLAFLLPGFIHID 283 (629)
T ss_pred CcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecC-cceEEEEecCCCcCHHHhccceeeee
Confidence 45655 566789999999999999999999999999999 99999999999999999999876655
No 31
>KOG0344|consensus
Probab=99.64 E-value=1.3e-16 Score=133.24 Aligned_cols=64 Identities=36% Similarity=0.657 Sum_probs=58.6
Q ss_pred Ccccc----CCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 2 AEWVK----FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 2 ~~f~~----l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
.+|.+ ...++.+++++...+|..|||+|.++||.++.+ +|+++|++||||||++|.+|++.++.
T Consensus 132 ~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~-r~~lAcapTGsgKtlaf~~Pil~~L~ 199 (593)
T KOG0344|consen 132 LSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEK-RDVLACAPTGSGKTLAFNLPILQHLK 199 (593)
T ss_pred ccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcc-cceEEeccCCCcchhhhhhHHHHHHH
Confidence 35655 568999999999999999999999999999999 99999999999999999999988876
No 32
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.64 E-value=3.4e-16 Score=117.49 Aligned_cols=62 Identities=40% Similarity=0.748 Sum_probs=58.9
Q ss_pred cccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 4 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 4 f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
|+++++++.+.+.|.+.|+..|++.|.++++.++.| +|++++++||+|||++|++|++..+.
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~-~~~li~~~TG~GKT~~~~~~~l~~~~ 62 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSG-RDVIGQAQTGSGKTAAFLIPILEKLD 62 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CcEEEECCCCCcHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999997 99999999999999999999987766
No 33
>KOG0329|consensus
Probab=99.63 E-value=1.7e-16 Score=121.63 Aligned_cols=64 Identities=30% Similarity=0.562 Sum_probs=59.5
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 2 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
+.|.+|-|.|+|++++-++||.+|+.+|.+|||..+.| .|++++|.+|.|||..|.+..++++-
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailg-mdvlcqaksgmgktavfvl~tlqqie 105 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILG-MDVLCQAKSGMGKTAVFVLATLQQIE 105 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhc-chhheecccCCCceeeeehhhhhhcC
Confidence 46899999999999999999999999999999999999 99999999999999999888877654
No 34
>PRK02362 ski2-like helicase; Provisional
Probab=99.63 E-value=2.2e-16 Score=139.26 Aligned_cols=64 Identities=25% Similarity=0.344 Sum_probs=58.4
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCchHHHhHHHH-HHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 2 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPS-ALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~-~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
|.|++|+|+++++++|.+.||..|+|+|.+||+. ++.| +|+++++|||||||++|.+|++..+.
T Consensus 1 ~~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g-~nvlv~APTGSGKTlia~lail~~l~ 65 (737)
T PRK02362 1 MKIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDG-KNLLAAIPTASGKTLIAELAMLKAIA 65 (737)
T ss_pred CChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCC-CcEEEECCCcchHHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999998 4556 99999999999999999999887653
No 35
>KOG0327|consensus
Probab=99.63 E-value=4.9e-17 Score=129.95 Aligned_cols=63 Identities=33% Similarity=0.641 Sum_probs=59.3
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhh
Q psy11948 2 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65 (167)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~ 65 (167)
-+|++|+|++.|++.++..||++|+.||+.||++...| .|++.++.+|+|||.+|++++++.+
T Consensus 26 dsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G-~dv~~qaqsgTgKt~af~i~iLq~i 88 (397)
T KOG0327|consen 26 DSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKG-HDVIAQAQSGTGKTAAFLISILQQI 88 (397)
T ss_pred hhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccC-CceeEeeeccccchhhhHHHHHhhc
Confidence 47999999999999999999999999999999999999 9999999999999999988888765
No 36
>KOG0339|consensus
Probab=99.62 E-value=1.2e-16 Score=131.90 Aligned_cols=65 Identities=34% Similarity=0.652 Sum_probs=60.3
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
+++|+.+++++.|+.++++..|+.|||||.+++|..++| +||+..|.||||||-+|+.|++..+.
T Consensus 222 vtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsg-rdvigIAktgSgktaAfi~pm~~him 286 (731)
T KOG0339|consen 222 VTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSG-RDVIGIAKTGSGKTAAFIWPMIVHIM 286 (731)
T ss_pred cchhhhcCchHHHHHHHhhhhcccCCccccccccccccc-ccchheeeccCcchhHHHHHHHHHhc
Confidence 578999999999999999999999999999999999999 99999999999999988888877665
No 37
>KOG4284|consensus
Probab=99.61 E-value=3.1e-16 Score=132.52 Aligned_cols=64 Identities=25% Similarity=0.481 Sum_probs=58.2
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 2 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
..|+.|.|..+++..|+..+|..||+||..+||+++.+ .|+|+++..|+|||+.|.+-.++.+.
T Consensus 25 ~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~k-mDliVQaKSGTGKTlVfsv~av~sl~ 88 (980)
T KOG4284|consen 25 PGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSK-MDLIVQAKSGTGKTLVFSVLAVESLD 88 (980)
T ss_pred CCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcc-cceEEEecCCCCceEEEEeeeehhcC
Confidence 46889999999999999999999999999999999999 99999999999999988877765544
No 38
>PRK00254 ski2-like helicase; Provisional
Probab=99.59 E-value=9.6e-16 Score=134.90 Aligned_cols=64 Identities=28% Similarity=0.335 Sum_probs=58.7
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCchHHHhHHHH-HHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 2 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPS-ALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~-~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
|+|++|++++.+.+.|++.||..|+|+|.++|+. ++.| +|++++++||||||++|.+|++..+.
T Consensus 1 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g-~nvlv~apTGsGKT~~~~l~il~~l~ 65 (720)
T PRK00254 1 MKVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEG-KNLVLAIPTASGKTLVAEIVMVNKLL 65 (720)
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCC-CcEEEECCCCcHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999987 5666 99999999999999999999887655
No 39
>KOG0332|consensus
Probab=99.59 E-value=3.6e-16 Score=125.00 Aligned_cols=65 Identities=25% Similarity=0.567 Sum_probs=57.4
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHcc-CCcEEEEeecCCCcccccccchhhhhh
Q psy11948 2 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA-RKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~-~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
.+|++|+|.|++++.|+.++|++|+.||..++|.++.. .+++|.++.+|+|||.||.+.+|.++-
T Consensus 90 ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd 155 (477)
T KOG0332|consen 90 KSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVD 155 (477)
T ss_pred ccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcC
Confidence 58999999999999999999999999999999998864 467888888888888888888877654
No 40
>KOG0350|consensus
Probab=99.53 E-value=8.3e-15 Score=120.80 Aligned_cols=83 Identities=37% Similarity=0.493 Sum_probs=58.3
Q ss_pred HHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhhcccCCCCccccccccccceeeeeccc
Q psy11948 13 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSARKDIVGAAETG 92 (167)
Q Consensus 13 l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~~~~~~~~~~~~~~~~~~d~~~~a~tg 92 (167)
+..+|.+++++...|+|...+|-++...+. +....++|+.+.|+||
T Consensus 148 ~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~----------------------------------p~~~r~rDIcV~ApTG 193 (620)
T KOG0350|consen 148 IDQLLVKMAISRLFPVQYAVLPSLLEEIRS----------------------------------PPPSRPRDICVNAPTG 193 (620)
T ss_pred HHHHHHHhhcccccchHHHHHHHHHHhhcC----------------------------------CCCCCCCceEEecCCC
Confidence 344589999999999999999988643110 0012356666666666
Q ss_pred CccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 93 SGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 93 sgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
||||++|.+|+.+.+.. +....+|+|||+|||||+.|
T Consensus 194 SGKTLaY~iPIVQ~L~~--------------------------------------R~v~~LRavVivPtr~L~~Q 230 (620)
T KOG0350|consen 194 SGKTLAYVIPIVQLLSS--------------------------------------RPVKRLRAVVIVPTRELALQ 230 (620)
T ss_pred CCceeeehhHHHHHHcc--------------------------------------CCccceEEEEEeeHHHHHHH
Confidence 66666666666666542 23556999999999999988
No 41
>PRK01172 ski2-like helicase; Provisional
Probab=99.50 E-value=1.7e-14 Score=126.22 Aligned_cols=63 Identities=14% Similarity=0.190 Sum_probs=57.3
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 2 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
++|++|+|++.+++.+.+.+|. ++++|.++++.+..| ++++++++||||||+++.++++..+.
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~-~nvlv~apTGSGKTl~a~lail~~l~ 63 (674)
T PRK01172 1 MKISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKG-ENVIVSVPTAAGKTLIAYSAIYETFL 63 (674)
T ss_pred CcHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcC-CcEEEECCCCchHHHHHHHHHHHHHH
Confidence 5799999999999999999996 999999999998887 99999999999999999888876543
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.49 E-value=3.2e-14 Score=127.46 Aligned_cols=56 Identities=27% Similarity=0.292 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 9 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 9 l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
|++.+.+.+.+ +|..|||+|.++||.++.| +|++++|+||||||++|++|++..+.
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g-~nvli~APTGSGKTlaa~Lpil~~l~ 73 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEG-KNVLISSPTGSGKTLAAFLAIIDELF 73 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcC-CCEEEECCCCCcHHHHHHHHHHHHHH
Confidence 67777777665 7999999999999999988 89999999999999999999998776
No 43
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.38 E-value=4.9e-13 Score=117.43 Aligned_cols=57 Identities=25% Similarity=0.350 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhhc
Q psy11948 9 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67 (167)
Q Consensus 9 l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~~ 67 (167)
|++.+.++++.. |+.|||+|..+||.+..| +++++.||||||||++.++|++..+++
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G-~nvLiiAPTGsGKTeAAfLpil~~l~~ 64 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSG-ENVLIIAPTGSGKTEAAFLPVINELLS 64 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCC-CceEEEcCCCCChHHHHHHHHHHHHHh
Confidence 699999999988 999999999999999988 999999999999999999999988874
No 44
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.32 E-value=9.2e-13 Score=111.02 Aligned_cols=43 Identities=30% Similarity=0.483 Sum_probs=40.4
Q ss_pred HCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchh
Q psy11948 19 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62 (167)
Q Consensus 19 ~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l 62 (167)
..||..|+|+|.++|+.++.| +|++++++||+|||++|.+|.+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g-~dvlv~apTGsGKTl~y~lp~l 48 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLG-RDCFVVMPTGGGKSLCYQLPAL 48 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcC-CCEEEEcCCCCcHhHHHHHHHH
Confidence 469999999999999999999 8999999999999999999875
No 45
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.28 E-value=3.2e-12 Score=113.12 Aligned_cols=61 Identities=18% Similarity=0.377 Sum_probs=54.2
Q ss_pred ccCCCCHHHHHHHH-----HCCCCCC---chHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 5 VKFNIPETIIRALY-----QKGFKTP---TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 5 ~~l~l~~~l~~~l~-----~~g~~~p---t~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
+.|++.+++.+.+. .+||..| ||+|.++||.++.+ +|+++.++||+|||++|.+|++..++
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~-~gvIAeaqTGeGKTLAf~LP~l~~aL 133 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMH-KGFITEMQTGEGKTLTAVMPLYLNAL 133 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcC-CCeEEEeCCCCChHHHHHHHHHHHHh
Confidence 35778888888877 6899999 99999999999999 99999999999999999999986654
No 46
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.24 E-value=8.5e-12 Score=108.19 Aligned_cols=55 Identities=25% Similarity=0.412 Sum_probs=47.8
Q ss_pred CCCCHHHHHHHHH-CCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchh
Q psy11948 7 FNIPETIIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62 (167)
Q Consensus 7 l~l~~~l~~~l~~-~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l 62 (167)
+.++....+.|++ .||..++|+|.++|+.++.| +|++++++||+|||++|.+|.+
T Consensus 7 ~~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g-~dvlv~apTGsGKTl~y~lpal 62 (607)
T PRK11057 7 LNLESLAKQVLQETFGYQQFRPGQQEIIDAVLSG-RDCLVVMPTGGGKSLCYQIPAL 62 (607)
T ss_pred CCchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHHHH
Confidence 4455566666765 69999999999999999999 9999999999999999999886
No 47
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.22 E-value=1.1e-11 Score=113.75 Aligned_cols=49 Identities=27% Similarity=0.247 Sum_probs=39.2
Q ss_pred HHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhh
Q psy11948 13 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63 (167)
Q Consensus 13 l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~ 63 (167)
..+.+.+.....||++|+.++|.++.| +|++++|+||+|||. |.+|+..
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~G-~d~vi~ApTGsGKT~-f~l~~~~ 115 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLRG-DSFAIIAPTGVGKTT-FGLAMSL 115 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhCC-CeEEEECCCCCCHHH-HHHHHHH
Confidence 344455544558999999999999999 999999999999996 6666543
No 48
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.20 E-value=1.6e-11 Score=110.67 Aligned_cols=59 Identities=20% Similarity=0.344 Sum_probs=51.0
Q ss_pred cccc--CCCCHHHHHHHHH-CCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchh
Q psy11948 3 EWVK--FNIPETIIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62 (167)
Q Consensus 3 ~f~~--l~l~~~l~~~l~~-~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l 62 (167)
.|.. ++....+...++. .||..++|+|.++|+.++.| +|++++++||+|||+||.+|.+
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~G-rDVLVimPTGSGKSLcYQLPAL 497 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSG-YDVFVLMPTGGGKSLTYQLPAL 497 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC-CCEEEEcCCCccHHHHHHHHHH
Confidence 4765 4455667777775 69999999999999999999 9999999999999999999986
No 49
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.17 E-value=1.4e-11 Score=89.31 Aligned_cols=40 Identities=35% Similarity=0.526 Sum_probs=36.2
Q ss_pred chHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 26 TKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 26 t~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
||+|.++++.+..| +++++.++||+|||+++.++++..+.
T Consensus 1 t~~Q~~~~~~i~~~-~~~li~aptGsGKT~~~~~~~l~~~~ 40 (169)
T PF00270_consen 1 TPLQQEAIEAIISG-KNVLISAPTGSGKTLAYILPALNRLQ 40 (169)
T ss_dssp -HHHHHHHHHHHTT-SEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcC-CCEEEECCCCCccHHHHHHHHHhhhc
Confidence 79999999999977 99999999999999999999987766
No 50
>PRK14701 reverse gyrase; Provisional
Probab=99.16 E-value=2.9e-11 Score=113.38 Aligned_cols=47 Identities=23% Similarity=0.126 Sum_probs=39.2
Q ss_pred HHHHHHHH-CCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccc
Q psy11948 12 TIIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60 (167)
Q Consensus 12 ~l~~~l~~-~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp 60 (167)
++.+.+++ .|| .||++|+.+||.++.| +|++++++||+|||+++.++
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G-~d~li~APTGsGKTl~~~~~ 114 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRG-KSFSIVAPTGMGKSTFGAFI 114 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcC-CCEEEEEcCCCCHHHHHHHH
Confidence 44455665 799 6999999999999999 99999999999999954433
No 51
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.16 E-value=3.6e-11 Score=108.07 Aligned_cols=57 Identities=14% Similarity=0.004 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHH-CCCCCCchHHHhHHHHHHcc-----CCcEEEEeecCCCcccccccchhhhh
Q psy11948 8 NIPETIIRALYQ-KGFKTPTKIQSMVMPSALLA-----RKDIVGAAETGSGKTLAFGIPILTGI 65 (167)
Q Consensus 8 ~l~~~l~~~l~~-~g~~~pt~iQ~~~ip~~l~~-----~~d~i~~a~tgsGKt~~~~lp~l~~~ 65 (167)
..+..+.+.+.+ .+| .||++|..||+.++.+ .+|++++++||+|||.+|+++++..+
T Consensus 435 ~~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al 497 (926)
T TIGR00580 435 PPDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAV 497 (926)
T ss_pred CCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHH
Confidence 345566666654 688 5999999999999875 36788888888888888777776543
No 52
>PRK09401 reverse gyrase; Reviewed
Probab=99.16 E-value=3.5e-11 Score=110.39 Aligned_cols=40 Identities=33% Similarity=0.415 Sum_probs=34.7
Q ss_pred CCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchh
Q psy11948 20 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62 (167)
Q Consensus 20 ~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l 62 (167)
.|+ .||++|..++|.++.| +|++++|+||+|||. |.++++
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g-~dv~i~ApTGsGKT~-f~l~~~ 116 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLG-ESFAIIAPTGVGKTT-FGLVMS 116 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCC-CcEEEEcCCCCCHHH-HHHHHH
Confidence 477 8999999999999999 999999999999995 555543
No 53
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.14 E-value=4.8e-11 Score=103.92 Aligned_cols=52 Identities=25% Similarity=0.300 Sum_probs=40.3
Q ss_pred HHHHHHHHCCCCCCchHHHhHHHHHHccC-----CcEEEEeecCCCcccccccchhhh
Q psy11948 12 TIIRALYQKGFKTPTKIQSMVMPSALLAR-----KDIVGAAETGSGKTLAFGIPILTG 64 (167)
Q Consensus 12 ~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~-----~d~i~~a~tgsGKt~~~~lp~l~~ 64 (167)
.+.+.+...+| .||++|+.+|+.++.+. .+.+++++||||||++|++|++..
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~ 280 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAA 280 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHH
Confidence 34556678899 79999999999998761 256888888888888877777654
No 54
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.14 E-value=5.5e-11 Score=106.16 Aligned_cols=57 Identities=28% Similarity=0.363 Sum_probs=52.0
Q ss_pred CHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhhc
Q psy11948 10 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67 (167)
Q Consensus 10 ~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~~ 67 (167)
...+..+|.+.|+..++.+|.+|+..+..| +|++++++||||||.+|++|++..+++
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G-~~vvVtTgTgSGKTe~FllPIld~~l~ 112 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREG-RNVVVTTGTGSGKTESFLLPILDHLLR 112 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCC-CCEEEECCCCCchhHHHHHHHHHHHhh
Confidence 445688899999999999999999999999 999999999999999999999988873
No 55
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.11 E-value=4.6e-11 Score=105.64 Aligned_cols=41 Identities=20% Similarity=0.200 Sum_probs=34.7
Q ss_pred CCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccch
Q psy11948 20 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 61 (167)
Q Consensus 20 ~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~ 61 (167)
.||. |||+|.++||.++.|..+++++++||||||.+|.++.
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafl 52 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWL 52 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhh
Confidence 5897 9999999999999994478889999999998665443
No 56
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.10 E-value=6.6e-11 Score=102.36 Aligned_cols=47 Identities=26% Similarity=0.450 Sum_probs=42.6
Q ss_pred HHHHH-CCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchh
Q psy11948 15 RALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62 (167)
Q Consensus 15 ~~l~~-~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l 62 (167)
+.|++ .||..++|+|.++|+.++.| +|+++++|||+|||++|.+|.+
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~g-~dvlv~~PTG~GKTl~y~lpal 50 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLDG-RDVLVVMPTGGGKSLCYQVPAL 50 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcC-CCEEEEcCCCccHhHHHHHHHH
Confidence 34554 79999999999999999999 8999999999999999998875
No 57
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.07 E-value=1.3e-10 Score=106.54 Aligned_cols=51 Identities=20% Similarity=0.062 Sum_probs=39.8
Q ss_pred HHHHHHHHHCCCCCCchHHHhHHHHHHcc-----CCcEEEEeecCCCcccccccchh
Q psy11948 11 ETIIRALYQKGFKTPTKIQSMVMPSALLA-----RKDIVGAAETGSGKTLAFGIPIL 62 (167)
Q Consensus 11 ~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~-----~~d~i~~a~tgsGKt~~~~lp~l 62 (167)
.+..+.....+| .||++|.++||.++.+ .+|++++++||+|||.+++.+..
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~ 643 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAF 643 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHH
Confidence 344555667889 7999999999999886 36888888888888877665553
No 58
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.07 E-value=1.6e-10 Score=101.48 Aligned_cols=54 Identities=22% Similarity=0.286 Sum_probs=40.8
Q ss_pred HHHHHHH-HHCCCCCCchHHHhHHHHHHccC-----CcEEEEeecCCCcccccccchhhhh
Q psy11948 11 ETIIRAL-YQKGFKTPTKIQSMVMPSALLAR-----KDIVGAAETGSGKTLAFGIPILTGI 65 (167)
Q Consensus 11 ~~l~~~l-~~~g~~~pt~iQ~~~ip~~l~~~-----~d~i~~a~tgsGKt~~~~lp~l~~~ 65 (167)
..+.+.+ ...+| .||++|..+|+.+..+. ++++++++||||||++|++|++..+
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~ 307 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAI 307 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHH
Confidence 4455544 46788 69999999999998772 3678888888888888887776543
No 59
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=98.99 E-value=2.5e-10 Score=98.86 Aligned_cols=42 Identities=29% Similarity=0.290 Sum_probs=36.5
Q ss_pred CCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhh
Q psy11948 20 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65 (167)
Q Consensus 20 ~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~ 65 (167)
.|. .||++|..++|.++.| + |+.+.||+|||++|.+|++...
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G-~--Iae~~TGeGKTla~~lp~~~~a 141 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSG-R--LAEMQTGEGKTLTATLPAGTAA 141 (656)
T ss_pred hCC-CCChHHHHHHHHHhCC-C--eeeeeCCCCcHHHHHHHHHHHh
Confidence 355 8999999999999999 5 8999999999999999987543
No 60
>KOG0349|consensus
Probab=98.94 E-value=3e-10 Score=93.19 Aligned_cols=66 Identities=35% Similarity=0.459 Sum_probs=63.1
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhhc
Q psy11948 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67 (167)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~~ 67 (167)
|+.|++||+-|+|--+-.++.|.-||.+|.++||.++.| -|++..|.||||||-+|.+|+++.++.
T Consensus 1 m~af~e~gv~pel~~a~~e~dw~lptdvqaeaiplilgg-gdvlmaaetgsgktgaf~lpilqiv~e 66 (725)
T KOG0349|consen 1 MTAFEEFGVLPELGMATDELDWTLPTDVQAEAIPLILGG-GDVLMAAETGSGKTGAFCLPILQIVWE 66 (725)
T ss_pred CcchHhhCcchHhhhhhhhhccccccccccccccEEecC-CcEEEEeccCCCCccceehhhHHHHHH
Confidence 688999999999999999999999999999999999888 899999999999999999999998876
No 61
>PHA02558 uvsW UvsW helicase; Provisional
Probab=98.68 E-value=1.3e-08 Score=86.66 Aligned_cols=35 Identities=20% Similarity=0.057 Sum_probs=30.9
Q ss_pred CCCCchHHHhHHHHHHccCCcEEEEeecCCCccccc
Q psy11948 22 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 57 (167)
Q Consensus 22 ~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~ 57 (167)
...|++.|..+++.++.+ .+.+++++||+|||+.+
T Consensus 112 ~~~~r~~Q~~av~~~l~~-~~~il~apTGsGKT~i~ 146 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKN-NRRLLNLPTSAGKSLIQ 146 (501)
T ss_pred cCCCCHHHHHHHHHHHhc-CceEEEeCCCCCHHHHH
Confidence 358999999999999988 78999999999999854
No 62
>COG1204 Superfamily II helicase [General function prediction only]
Probab=98.68 E-value=1.1e-08 Score=90.49 Aligned_cols=59 Identities=25% Similarity=0.388 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 8 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 8 ~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
.+++.+.+.++..|+.+..+.|+.++...+.++.|+++|+|||||||+...+.++..+.
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~ 73 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLL 73 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHH
Confidence 37889999999999988888888888665444599999999999999988877776655
No 63
>PRK05580 primosome assembly protein PriA; Validated
Probab=98.63 E-value=4.7e-08 Score=85.96 Aligned_cols=39 Identities=26% Similarity=0.145 Sum_probs=32.6
Q ss_pred CCchHHHhHHHHHHcc--CCcEEEEeecCCCcccccccchh
Q psy11948 24 TPTKIQSMVMPSALLA--RKDIVGAAETGSGKTLAFGIPIL 62 (167)
Q Consensus 24 ~pt~iQ~~~ip~~l~~--~~d~i~~a~tgsGKt~~~~lp~l 62 (167)
.+|+.|+.++..+..+ ++++++.++||||||.+|+.++.
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~ 184 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIA 184 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHH
Confidence 5899999999998873 57899999999999998876554
No 64
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=98.60 E-value=2.7e-08 Score=88.02 Aligned_cols=43 Identities=23% Similarity=0.364 Sum_probs=35.7
Q ss_pred CCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 20 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 20 ~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
.|. .|+++|..+++.++.| + |+.+.||+|||+++.+|++...+
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G-~--Iaem~TGeGKTL~a~lp~~l~al 117 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEG-N--IAEMQTGEGKTLTATMPLYLNAL 117 (790)
T ss_pred hCC-CCchHHHHhHHHHcCC-c--eeeecCCCcchHHHHHHHHHHHH
Confidence 366 9999999999988877 4 89999999999999988864433
No 65
>PHA02653 RNA helicase NPH-II; Provisional
Probab=98.59 E-value=4.3e-08 Score=85.80 Aligned_cols=29 Identities=28% Similarity=0.319 Sum_probs=27.0
Q ss_pred hHHHhHHHHHHccCCcEEEEeecCCCcccc
Q psy11948 27 KIQSMVMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 27 ~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
.+|.+.++.++.| +|++++|+||+|||.+
T Consensus 167 ~iQ~qil~~i~~g-kdvIv~A~TGSGKTtq 195 (675)
T PHA02653 167 DVQLKIFEAWISR-KPVVLTGGTGVGKTSQ 195 (675)
T ss_pred HHHHHHHHHHHhC-CCEEEECCCCCCchhH
Confidence 3899999999999 9999999999999986
No 66
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=98.57 E-value=9.7e-08 Score=80.99 Aligned_cols=63 Identities=24% Similarity=0.373 Sum_probs=54.8
Q ss_pred cccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 4 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 4 f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
.++|.+|+++.+.|+..|++++.|+|..|+.+-+-.+.|.++.+.|+||||+.--+.-+.+++
T Consensus 196 vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l 258 (830)
T COG1202 196 VDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLL 258 (830)
T ss_pred ccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHH
Confidence 467899999999999999999999999999875444499999999999999977777776666
No 67
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.55 E-value=8e-08 Score=86.50 Aligned_cols=54 Identities=22% Similarity=0.277 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHCCCCCCchHHHhHHHHH---HccCCcEEEEeecCCCcccccccchhh
Q psy11948 9 IPETIIRALYQKGFKTPTKIQSMVMPSA---LLARKDIVGAAETGSGKTLAFGIPILT 63 (167)
Q Consensus 9 l~~~l~~~l~~~g~~~pt~iQ~~~ip~~---l~~~~d~i~~a~tgsGKt~~~~lp~l~ 63 (167)
+++...+.+...||+ +.|.|.+.+..+ +.+++++++.|+||+|||++|++|.+.
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~ 287 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALY 287 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHH
Confidence 344677788888996 789999866532 333488889999999999988888754
No 68
>KOG0952|consensus
Probab=98.52 E-value=5.6e-08 Score=86.72 Aligned_cols=48 Identities=35% Similarity=0.425 Sum_probs=43.1
Q ss_pred CCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhhc
Q psy11948 20 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67 (167)
Q Consensus 20 ~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~~ 67 (167)
.+|.+...+|..++|.+.+...+.++|||||+|||..++|.+++.+..
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~ 153 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKE 153 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHh
Confidence 478899999999999999887899999999999999999999887763
No 69
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=98.40 E-value=1.4e-07 Score=82.72 Aligned_cols=40 Identities=28% Similarity=0.363 Sum_probs=33.4
Q ss_pred CCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhh
Q psy11948 20 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63 (167)
Q Consensus 20 ~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~ 63 (167)
.|. .|+++|..+.+.+..| + |+.++||+|||+++.+|++.
T Consensus 53 lg~-~p~~vQlig~~~l~~G-~--Iaem~TGeGKTLva~lpa~l 92 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKG-K--IAEMKTGEGKTLTATLPAYL 92 (745)
T ss_pred hCC-CccchHHhhhhhhcCC-c--eeeecCCCccHHHHHHHHHH
Confidence 365 8999999999887766 3 88999999999999888853
No 70
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.36 E-value=3.3e-07 Score=82.19 Aligned_cols=43 Identities=23% Similarity=0.316 Sum_probs=30.7
Q ss_pred CCCCCCchHHHh---HHHHHHccCCcEEEEeecCCCcccccccchhh
Q psy11948 20 KGFKTPTKIQSM---VMPSALLARKDIVGAAETGSGKTLAFGIPILT 63 (167)
Q Consensus 20 ~g~~~pt~iQ~~---~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~ 63 (167)
.|| ++.+-|.+ ++-..+.++..+++.|+||+|||++|++|.+.
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~ 287 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLA 287 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHH
Confidence 355 67888887 44334445578888888888888888888653
No 71
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=98.35 E-value=2.5e-07 Score=81.53 Aligned_cols=41 Identities=24% Similarity=0.343 Sum_probs=31.5
Q ss_pred CCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhh
Q psy11948 20 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTG 64 (167)
Q Consensus 20 ~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~ 64 (167)
.|. .|+++|......+..| .++.++||+|||++|.+|.+..
T Consensus 67 lgl-rpydVQlig~l~l~~G---~Iaem~TGeGKTLta~Lpa~l~ 107 (762)
T TIGR03714 67 LGM-FPYDVQVLGAIVLHQG---NIAEMKTGEGKTLTATMPLYLN 107 (762)
T ss_pred cCC-CccHHHHHHHHHhcCC---ceeEecCCcchHHHHHHHHHHH
Confidence 365 7888888877655544 5899999999999999997543
No 72
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=98.31 E-value=6.2e-07 Score=65.46 Aligned_cols=48 Identities=35% Similarity=0.447 Sum_probs=39.9
Q ss_pred HCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 19 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 19 ~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
..++..|++.|.+++..+......+++.+++|+|||.++...++..+.
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~ 50 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALK 50 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhc
Confidence 457889999999999988865478999999999999988877766554
No 73
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.19 E-value=9.6e-07 Score=76.83 Aligned_cols=25 Identities=40% Similarity=0.347 Sum_probs=17.6
Q ss_pred CcEEEEeecCCCcccccccchhhhh
Q psy11948 41 KDIVGAAETGSGKTLAFGIPILTGI 65 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~~lp~l~~~ 65 (167)
..+++.|+||+|||++|++|.+..+
T Consensus 17 ~~lliEA~TGtGKTlAYLlpal~~~ 41 (636)
T TIGR03117 17 RIGMLEASTGVGKTLAMIMAALTML 41 (636)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHH
Confidence 6777777777777777777776543
No 74
>KOG0346|consensus
Probab=98.06 E-value=1.2e-06 Score=72.28 Aligned_cols=74 Identities=38% Similarity=0.511 Sum_probs=61.7
Q ss_pred hhhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHH
Q psy11948 61 ILTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 135 (167)
Q Consensus 61 ~l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 135 (167)
+++.+.. +|+.||.+|+.+ ..++|+++.|.||||||++|++|+++.++......
T Consensus 30 llkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~--------------------- 88 (569)
T KOG0346|consen 30 LLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN--------------------- 88 (569)
T ss_pred HHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc---------------------
Confidence 4444444 999999999765 78999999999999999999999999998654442
Q ss_pred HHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 136 EEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
.....|.|+||+||||||.|
T Consensus 89 ------------~~e~~~sa~iLvPTkEL~qQ 108 (569)
T KOG0346|consen 89 ------------DGEQGPSAVILVPTKELAQQ 108 (569)
T ss_pred ------------cccccceeEEEechHHHHHH
Confidence 23467999999999999987
No 75
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=98.06 E-value=2.7e-06 Score=76.25 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=18.9
Q ss_pred CCcEEEEeecCCCcccccccchhh
Q psy11948 40 RKDIVGAAETGSGKTLAFGIPILT 63 (167)
Q Consensus 40 ~~d~i~~a~tgsGKt~~~~lp~l~ 63 (167)
+.+++++|+||||||++|.++++.
T Consensus 20 ~~~vvv~A~TGSGKTt~~pl~lL~ 43 (812)
T PRK11664 20 APQVLLKAPTGAGKSTWLPLQLLQ 43 (812)
T ss_pred CCCEEEEcCCCCCHHHHHHHHHHH
Confidence 378888888888888888777764
No 76
>KOG0347|consensus
Probab=97.98 E-value=2.9e-06 Score=71.78 Aligned_cols=90 Identities=42% Similarity=0.585 Sum_probs=61.9
Q ss_pred Ccccccccchhhhhhc-ccCCCCcccccc-----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcch
Q psy11948 52 GKTLAFGIPILTGIVN-KLENPTEEDEND-----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLE 125 (167)
Q Consensus 52 GKt~~~~lp~l~~~~~-~~~~~~~~~~~~-----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~ 125 (167)
.|-+....++|..+.. +|..||++|... ....|++++|.||||||++|++|+++.+.....
T Consensus 183 W~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~------------- 249 (731)
T KOG0347|consen 183 WKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSD------------- 249 (731)
T ss_pred HhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccc-------------
Confidence 3444223367777777 999999999655 334899999999999999999999986642211
Q ss_pred hHHHHHHHHHHHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 126 EEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 126 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
+..+..+ .. .....+.+||++||||||+|
T Consensus 250 -~s~e~~~-----------~~-~k~~k~~~LV~tPTRELa~Q 278 (731)
T KOG0347|consen 250 -DSQELSN-----------TS-AKYVKPIALVVTPTRELAHQ 278 (731)
T ss_pred -hHhhhhh-----------HH-hccCcceeEEecChHHHHHH
Confidence 1111111 01 11222359999999999998
No 77
>KOG0333|consensus
Probab=97.96 E-value=4.7e-06 Score=70.17 Aligned_cols=110 Identities=35% Similarity=0.362 Sum_probs=78.3
Q ss_pred hHHHhHHHHHHccCCc-----EEEEeecCCCccccc-------------------------ccchhhhhhc-ccCCCCcc
Q psy11948 27 KIQSMVMPSALLARKD-----IVGAAETGSGKTLAF-------------------------GIPILTGIVN-KLENPTEE 75 (167)
Q Consensus 27 ~iQ~~~ip~~l~~~~d-----~i~~a~tgsGKt~~~-------------------------~lp~l~~~~~-~~~~~~~~ 75 (167)
-.|+.+.+....+ .| ...-+.++.+++-.| ..-+|..+.+ ++..|+++
T Consensus 193 ~~qk~~k~~~k~~-~DdrhW~~k~l~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpI 271 (673)
T KOG0333|consen 193 LLQKVCKKEAKSG-WDDRHWSEKVLAEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPI 271 (673)
T ss_pred HHHHhhhhhhhcc-ccccchhhhhHHhcCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchH
Confidence 5788888888877 44 334444555554443 2335555555 88889999
Q ss_pred cccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhhhcccc
Q psy11948 76 DEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 151 (167)
Q Consensus 76 ~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 151 (167)
|..+ ...+|+++.|+||||||++|++|++..+.+--.. ........
T Consensus 272 qR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~------------------------------~~~en~~~ 321 (673)
T KOG0333|consen 272 QRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPM------------------------------ARLENNIE 321 (673)
T ss_pred HHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCc------------------------------chhhhccc
Confidence 8665 6779999999999999999999998777532100 00123457
Q ss_pred ccceEEEccchhhhcC
Q psy11948 152 KLYALILAPTRELAIQ 167 (167)
Q Consensus 152 ~~~aLIl~PTRELa~Q 167 (167)
+|+++||.||||||.|
T Consensus 322 gpyaiilaptReLaqq 337 (673)
T KOG0333|consen 322 GPYAIILAPTRELAQQ 337 (673)
T ss_pred CceeeeechHHHHHHH
Confidence 7999999999999987
No 78
>KOG0331|consensus
Probab=97.95 E-value=3.4e-06 Score=71.38 Aligned_cols=74 Identities=36% Similarity=0.573 Sum_probs=60.2
Q ss_pred hhhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHH
Q psy11948 61 ILTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 135 (167)
Q Consensus 61 ~l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 135 (167)
+...+.. ++..|+.+|... ..|+|+++.|.||||||++|++|+|..+......
T Consensus 102 ~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~---------------------- 159 (519)
T KOG0331|consen 102 LMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGK---------------------- 159 (519)
T ss_pred HHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhcccc----------------------
Confidence 3333334 999999999765 7899999999999999999999999998742111
Q ss_pred HHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 136 EEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
..+...|++|||+||||||.|
T Consensus 160 -----------~~~~~~P~vLVL~PTRELA~Q 180 (519)
T KOG0331|consen 160 -----------LSRGDGPIVLVLAPTRELAVQ 180 (519)
T ss_pred -----------ccCCCCCeEEEEcCcHHHHHH
Confidence 234568999999999999998
No 79
>KOG0338|consensus
Probab=97.94 E-value=2.3e-06 Score=71.89 Aligned_cols=73 Identities=41% Similarity=0.565 Sum_probs=62.9
Q ss_pred cchhhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHH
Q psy11948 59 IPILTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLE 133 (167)
Q Consensus 59 lp~l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 133 (167)
-|++..+-. ++..||++|... ..|+|++++|-||+|||.+|.+|++++++-+
T Consensus 190 RPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYr----------------------- 246 (691)
T KOG0338|consen 190 RPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYR----------------------- 246 (691)
T ss_pred hHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcC-----------------------
Confidence 378887777 999999999654 7899999999999999999999999999743
Q ss_pred HHHHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 134 ELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
.+.....|+||||||||||+|
T Consensus 247 -------------Pk~~~~TRVLVL~PTRELaiQ 267 (691)
T KOG0338|consen 247 -------------PKKVAATRVLVLVPTRELAIQ 267 (691)
T ss_pred -------------cccCcceeEEEEeccHHHHHH
Confidence 233556799999999999998
No 80
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=97.92 E-value=4.9e-06 Score=74.40 Aligned_cols=14 Identities=21% Similarity=0.052 Sum_probs=12.6
Q ss_pred ceEEEccchhhhcC
Q psy11948 154 YALILAPTRELAIQ 167 (167)
Q Consensus 154 ~aLIl~PTRELa~Q 167 (167)
.++||+||++||.|
T Consensus 125 ~V~VvTpn~yLA~q 138 (896)
T PRK13104 125 GVHIVTVNDYLAKR 138 (896)
T ss_pred CEEEEcCCHHHHHH
Confidence 48999999999986
No 81
>KOG0330|consensus
Probab=97.91 E-value=3.9e-06 Score=68.37 Aligned_cols=69 Identities=41% Similarity=0.649 Sum_probs=59.1
Q ss_pred chhhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHH
Q psy11948 60 PILTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEE 134 (167)
Q Consensus 60 p~l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 134 (167)
.+++...+ .+..||.+|..+ +.++|+++.|+||||||.+|.+|+++.++.
T Consensus 71 ~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~------------------------- 125 (476)
T KOG0330|consen 71 ELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQ------------------------- 125 (476)
T ss_pred HHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHc-------------------------
Confidence 45555555 899999999665 789999999999999999999999999983
Q ss_pred HHHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 135 LEEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
....+++|||+||||||.|
T Consensus 126 --------------~p~~~~~lVLtPtRELA~Q 144 (476)
T KOG0330|consen 126 --------------EPKLFFALVLTPTRELAQQ 144 (476)
T ss_pred --------------CCCCceEEEecCcHHHHHH
Confidence 2345999999999999987
No 82
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=97.91 E-value=7.7e-06 Score=73.38 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=20.1
Q ss_pred cCCcEEEEeecCCCcccccccchhhh
Q psy11948 39 ARKDIVGAAETGSGKTLAFGIPILTG 64 (167)
Q Consensus 39 ~~~d~i~~a~tgsGKt~~~~lp~l~~ 64 (167)
.+.+++++|+||||||.+|.++++..
T Consensus 16 ~~~~vIi~a~TGSGKTT~vpl~lL~~ 41 (819)
T TIGR01970 16 AHPQVVLEAPPGAGKSTAVPLALLDA 41 (819)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 33788888888888888888877643
No 83
>PRK13766 Hef nuclease; Provisional
Probab=97.91 E-value=8.8e-06 Score=72.66 Aligned_cols=42 Identities=21% Similarity=0.142 Sum_probs=32.8
Q ss_pred CCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhh
Q psy11948 21 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTG 64 (167)
Q Consensus 21 g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~ 64 (167)
+.-+|.+.|...+..++.+ +++++++||+|||..+++++...
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~--n~lv~~ptG~GKT~~a~~~i~~~ 53 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK--NTLVVLPTGLGKTAIALLVIAER 53 (773)
T ss_pred CcCCccHHHHHHHHHHhcC--CeEEEcCCCccHHHHHHHHHHHH
Confidence 3447888999988777755 88999999999998777766543
No 84
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=97.88 E-value=9.1e-06 Score=68.32 Aligned_cols=35 Identities=20% Similarity=0.125 Sum_probs=29.0
Q ss_pred CCCchHHHhHHHHHHcc---CCcEEEEeecCCCccccc
Q psy11948 23 KTPTKIQSMVMPSALLA---RKDIVGAAETGSGKTLAF 57 (167)
Q Consensus 23 ~~pt~iQ~~~ip~~l~~---~~d~i~~a~tgsGKt~~~ 57 (167)
..+.+.|.+++.++... .+..+++.+||+|||...
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va 72 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVA 72 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHH
Confidence 35889999999998883 388899999999998744
No 85
>KOG0343|consensus
Probab=97.87 E-value=3.3e-06 Score=71.52 Aligned_cols=65 Identities=45% Similarity=0.609 Sum_probs=55.2
Q ss_pred ccCCCCccccc----cccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcch
Q psy11948 68 KLENPTEEDEN----DSARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 143 (167)
Q Consensus 68 ~~~~~~~~~~~----~~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 143 (167)
.+..+|.+|.. +..|+|++++|.||||||++|++|+++.+.+..
T Consensus 88 ~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~k-------------------------------- 135 (758)
T KOG0343|consen 88 KFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLK-------------------------------- 135 (758)
T ss_pred CCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcC--------------------------------
Confidence 67778888754 488999999999999999999999999998542
Q ss_pred hhhhccccccceEEEccchhhhcC
Q psy11948 144 EFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 144 ~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
.....++.+|||+||||||.|
T Consensus 136 ---Ws~~DGlGalIISPTRELA~Q 156 (758)
T KOG0343|consen 136 ---WSPTDGLGALIISPTRELALQ 156 (758)
T ss_pred ---CCCCCCceeEEecchHHHHHH
Confidence 233466899999999999988
No 86
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.77 E-value=2.2e-05 Score=62.48 Aligned_cols=42 Identities=31% Similarity=0.193 Sum_probs=33.8
Q ss_pred CCchHHHhHHHH----HHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 24 TPTKIQSMVMPS----ALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 24 ~pt~iQ~~~ip~----~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
.|.|.|.+.+.. +..| .++++.+|||+|||+++++|.+....
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~-~~~~~eapTGtGKTl~~L~~al~~~~ 53 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRG-KIGILESPTGTGKTLSLLCLTLTWLR 53 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcC-CcEEEECCCCcchhHHHHHHHHHHHH
Confidence 468999985543 3445 89999999999999999999987655
No 87
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.77 E-value=2.2e-05 Score=62.48 Aligned_cols=42 Identities=31% Similarity=0.193 Sum_probs=33.8
Q ss_pred CCchHHHhHHHH----HHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 24 TPTKIQSMVMPS----ALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 24 ~pt~iQ~~~ip~----~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
.|.|.|.+.+.. +..| .++++.+|||+|||+++++|.+....
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~-~~~~~eapTGtGKTl~~L~~al~~~~ 53 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRG-KIGILESPTGTGKTLSLLCLTLTWLR 53 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcC-CcEEEECCCCcchhHHHHHHHHHHHH
Confidence 468999985543 3445 89999999999999999999987655
No 88
>KOG0348|consensus
Probab=97.74 E-value=8.9e-06 Score=68.72 Aligned_cols=75 Identities=37% Similarity=0.568 Sum_probs=61.3
Q ss_pred chhhhhhc---ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHH
Q psy11948 60 PILTGIVN---KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVL 132 (167)
Q Consensus 60 p~l~~~~~---~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (167)
|.+..-++ ++..||.+|.++ ..++|+++.++||||||++|++|+++.+..-..+.
T Consensus 145 ~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki------------------ 206 (708)
T KOG0348|consen 145 PHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKI------------------ 206 (708)
T ss_pred HHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccc------------------
Confidence 54444444 888999998766 67999999999999999999999999986433322
Q ss_pred HHHHHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 133 EELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 133 e~~~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
.+..++.||||+||||||.|
T Consensus 207 ---------------~Rs~G~~ALVivPTREL~~Q 226 (708)
T KOG0348|consen 207 ---------------QRSDGPYALVIVPTRELALQ 226 (708)
T ss_pred ---------------cccCCceEEEEechHHHHHH
Confidence 35678999999999999988
No 89
>KOG0345|consensus
Probab=97.74 E-value=1.1e-05 Score=67.13 Aligned_cols=66 Identities=42% Similarity=0.507 Sum_probs=56.2
Q ss_pred ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcch
Q psy11948 68 KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 143 (167)
Q Consensus 68 ~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 143 (167)
+|...|+.|..+ ..++|+++.|+||||||+||++|+++-+.++..+.
T Consensus 25 GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~----------------------------- 75 (567)
T KOG0345|consen 25 GFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKT----------------------------- 75 (567)
T ss_pred CCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCC-----------------------------
Confidence 788888888665 78899999999999999999999999997665442
Q ss_pred hhhhccccccceEEEccchhhhcC
Q psy11948 144 EFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 144 ~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
....+.||||+||||||.|
T Consensus 76 -----~~~~vgalIIsPTRELa~Q 94 (567)
T KOG0345|consen 76 -----PPGQVGALIISPTRELARQ 94 (567)
T ss_pred -----CccceeEEEecCcHHHHHH
Confidence 2336889999999999987
No 90
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=97.73 E-value=1.7e-05 Score=57.70 Aligned_cols=35 Identities=23% Similarity=0.218 Sum_probs=26.7
Q ss_pred CCchHHHhHHHHHHc------cCCcEEEEeecCCCcccccc
Q psy11948 24 TPTKIQSMVMPSALL------ARKDIVGAAETGSGKTLAFG 58 (167)
Q Consensus 24 ~pt~iQ~~~ip~~l~------~~~d~i~~a~tgsGKt~~~~ 58 (167)
.+.+.|.+++-.+.. ....+++.++||+|||...+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~ 43 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIAL 43 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhh
Confidence 478899999988874 24788888888888887554
No 91
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=6.4e-06 Score=70.46 Aligned_cols=72 Identities=43% Similarity=0.638 Sum_probs=57.0
Q ss_pred cchhhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHH
Q psy11948 59 IPILTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLE 133 (167)
Q Consensus 59 lp~l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 133 (167)
..++..+.. ++..||++|..+ ..++|+++.|+||+|||++|++|+++.+...
T Consensus 38 ~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~----------------------- 94 (513)
T COG0513 38 PELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKS----------------------- 94 (513)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcc-----------------------
Confidence 345555555 899999999765 7789999999999999999999999997532
Q ss_pred HHHHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 134 ELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
.......+|||+||||||+|
T Consensus 95 --------------~~~~~~~aLil~PTRELA~Q 114 (513)
T COG0513 95 --------------VERKYVSALILAPTRELAVQ 114 (513)
T ss_pred --------------cccCCCceEEECCCHHHHHH
Confidence 00111129999999999998
No 92
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.62 E-value=1.2e-05 Score=67.03 Aligned_cols=75 Identities=33% Similarity=0.467 Sum_probs=58.6
Q ss_pred hhhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHH
Q psy11948 61 ILTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 135 (167)
Q Consensus 61 ~l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 135 (167)
++..+.. ++..|+.+|..+ ..++|+++.|+||+|||++|++|+++.++......
T Consensus 19 l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~--------------------- 77 (423)
T PRK04837 19 VVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPE--------------------- 77 (423)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhccccc---------------------
Confidence 4444444 888999999765 77899999999999999999999999886432110
Q ss_pred HHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 136 EEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
......+++|||+||||||.|
T Consensus 78 -----------~~~~~~~~~lil~PtreLa~Q 98 (423)
T PRK04837 78 -----------DRKVNQPRALIMAPTRELAVQ 98 (423)
T ss_pred -----------ccccCCceEEEECCcHHHHHH
Confidence 012346899999999999987
No 93
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=97.57 E-value=2e-05 Score=67.53 Aligned_cols=75 Identities=29% Similarity=0.453 Sum_probs=58.0
Q ss_pred hhhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHH
Q psy11948 61 ILTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 135 (167)
Q Consensus 61 ~l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 135 (167)
++..+.. ++..|+.+|..+ ..++|+++.++||+|||++|++|++..+.......
T Consensus 132 l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~--------------------- 190 (518)
T PLN00206 132 LLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGH--------------------- 190 (518)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhcccc---------------------
Confidence 4444444 889999999665 77899999999999999999999998876322111
Q ss_pred HHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 136 EEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
......+++|||+||||||.|
T Consensus 191 -----------~~~~~~~~aLIL~PTreLa~Q 211 (518)
T PLN00206 191 -----------PSEQRNPLAMVLTPTRELCVQ 211 (518)
T ss_pred -----------ccccCCceEEEEeCCHHHHHH
Confidence 012356899999999999987
No 94
>PTZ00110 helicase; Provisional
Probab=97.56 E-value=1.7e-05 Score=68.37 Aligned_cols=74 Identities=41% Similarity=0.525 Sum_probs=58.3
Q ss_pred chhhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHH
Q psy11948 60 PILTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEE 134 (167)
Q Consensus 60 p~l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 134 (167)
.++..+.+ ++..|+.+|..+ ..++|+++.++||+|||++|++|++..+......
T Consensus 140 ~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~--------------------- 198 (545)
T PTZ00110 140 YILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLL--------------------- 198 (545)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccc---------------------
Confidence 35555555 899999999665 7789999999999999999999999877532110
Q ss_pred HHHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 135 LEEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
.....+++|||+||||||.|
T Consensus 199 -------------~~~~gp~~LIL~PTreLa~Q 218 (545)
T PTZ00110 199 -------------RYGDGPIVLVLAPTRELAEQ 218 (545)
T ss_pred -------------cCCCCcEEEEECChHHHHHH
Confidence 11345789999999999987
No 95
>KOG0335|consensus
Probab=97.56 E-value=3.2e-05 Score=64.83 Aligned_cols=77 Identities=38% Similarity=0.450 Sum_probs=60.1
Q ss_pred hhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHH
Q psy11948 62 LTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELE 136 (167)
Q Consensus 62 l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 136 (167)
...+.+ ++..|+++|..+ ..++|+..+|+||+|||.+|++|++..+++........
T Consensus 86 ~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~------------------- 146 (482)
T KOG0335|consen 86 AGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGE------------------- 146 (482)
T ss_pred hhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcc-------------------
Confidence 333344 788899998665 78899999999999999999999999998654433211
Q ss_pred HhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 137 EESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
......|++|||+||||||.|
T Consensus 147 ----------~~~~~~P~~lIlapTReL~~Q 167 (482)
T KOG0335|consen 147 ----------SGGGVYPRALILAPTRELVDQ 167 (482)
T ss_pred ----------cCCCCCCceEEEeCcHHHhhH
Confidence 112267999999999999988
No 96
>KOG0336|consensus
Probab=97.52 E-value=0.00015 Score=59.86 Aligned_cols=119 Identities=27% Similarity=0.370 Sum_probs=86.3
Q ss_pred HHHHHHHH--CCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccc-------------cchhhhhhc-ccCCCCcc
Q psy11948 12 TIIRALYQ--KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG-------------IPILTGIVN-KLENPTEE 75 (167)
Q Consensus 12 ~l~~~l~~--~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~-------------lp~l~~~~~-~~~~~~~~ 75 (167)
.+.+++++ ..-..+++.|.+-|-. . ...|-|..--.|++.-.. ..++..+.+ +|..|+++
T Consensus 171 Pi~knfYke~~e~s~ls~~q~~~~r~---e-n~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPtPI 246 (629)
T KOG0336|consen 171 PIKKNFYKESNETSNLSKEQLQEWRK---E-NFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPI 246 (629)
T ss_pred chhhhhhhcCchhccCCHHHHHHHHH---c-CCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcc
Confidence 44555553 3466788888886632 3 456667676777654322 235555556 89999999
Q ss_pred cccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhhhcccc
Q psy11948 76 DEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRN 151 (167)
Q Consensus 76 ~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 151 (167)
|.++ +.|.|+++.|+||+|||++|++|-+..+...... ...+.
T Consensus 247 qSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~---------------------------------~~qr~ 293 (629)
T KOG0336|consen 247 QSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKR---------------------------------REQRN 293 (629)
T ss_pred hhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchh---------------------------------hhccC
Confidence 9776 8899999999999999999999998776532211 12467
Q ss_pred ccceEEEccchhhhcC
Q psy11948 152 KLYALILAPTRELAIQ 167 (167)
Q Consensus 152 ~~~aLIl~PTRELa~Q 167 (167)
.|++|+++||||||+|
T Consensus 294 ~p~~lvl~ptreLalq 309 (629)
T KOG0336|consen 294 GPGVLVLTPTRELALQ 309 (629)
T ss_pred CCceEEEeccHHHHHH
Confidence 8999999999999987
No 97
>KOG0341|consensus
Probab=97.50 E-value=5.9e-05 Score=61.80 Aligned_cols=87 Identities=33% Similarity=0.464 Sum_probs=70.9
Q ss_pred CCCcccccccchhhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcc
Q psy11948 50 GSGKTLAFGIPILTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 124 (167)
Q Consensus 50 gsGKt~~~~lp~l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~ 124 (167)
+|-|-+-|.-|++..+.. ++..||++|-+. .+|+|.++.|-||||||++|.+|++-..++.....
T Consensus 170 ksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~l---------- 239 (610)
T KOG0341|consen 170 KSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMML---------- 239 (610)
T ss_pred hhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcC----------
Confidence 566677777889888887 888999998665 88999999999999999999999998776433221
Q ss_pred hhHHHHHHHHHHHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 125 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 125 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
-..+...|.+|||||+||||.|
T Consensus 240 ---------------------Pf~~~EGP~gLiicPSRELArQ 261 (610)
T KOG0341|consen 240 ---------------------PFARGEGPYGLIICPSRELARQ 261 (610)
T ss_pred ---------------------ccccCCCCeeEEEcCcHHHHHH
Confidence 1234677999999999999987
No 98
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=97.50 E-value=0.00014 Score=67.48 Aligned_cols=33 Identities=24% Similarity=0.237 Sum_probs=26.1
Q ss_pred CCchHHHhHHHHHH----ccCCcEEEEeecCCCcccc
Q psy11948 24 TPTKIQSMVMPSAL----LARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 24 ~pt~iQ~~~ip~~l----~~~~d~i~~a~tgsGKt~~ 56 (167)
.+.+.|..+|..+. .|.+..+++.+||||||..
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~t 449 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRT 449 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHH
Confidence 58899999997765 3556788888888888875
No 99
>KOG0342|consensus
Probab=97.46 E-value=5.1e-05 Score=63.49 Aligned_cols=72 Identities=40% Similarity=0.511 Sum_probs=58.2
Q ss_pred hhhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHH
Q psy11948 61 ILTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 135 (167)
Q Consensus 61 ~l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 135 (167)
.+..+.+ +|...|.+|+.. ..++|++++|.||+|||++|++|.++.+....
T Consensus 93 t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~------------------------ 148 (543)
T KOG0342|consen 93 TLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLK------------------------ 148 (543)
T ss_pred HHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcc------------------------
Confidence 3344444 888888888765 67899999999999999999999999886432
Q ss_pred HHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 136 EEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
...+..+.+||||||||||+|
T Consensus 149 -----------~~~r~~~~vlIi~PTRELA~Q 169 (543)
T KOG0342|consen 149 -----------FKPRNGTGVLIICPTRELAMQ 169 (543)
T ss_pred -----------cCCCCCeeEEEecccHHHHHH
Confidence 123477899999999999998
No 100
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=97.45 E-value=3e-05 Score=65.39 Aligned_cols=74 Identities=36% Similarity=0.620 Sum_probs=57.1
Q ss_pred hhhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHH
Q psy11948 61 ILTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 135 (167)
Q Consensus 61 ~l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 135 (167)
++..+.. ++..|+..|..+ ..++|+++.++||+|||++|++|+++.+.......
T Consensus 12 l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~--------------------- 70 (456)
T PRK10590 12 ILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHA--------------------- 70 (456)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhccccc---------------------
Confidence 4444444 788899998665 67899999999999999999999998885321110
Q ss_pred HHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 136 EEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
.....+++|||+||||||.|
T Consensus 71 ------------~~~~~~~aLil~PtreLa~Q 90 (456)
T PRK10590 71 ------------KGRRPVRALILTPTRELAAQ 90 (456)
T ss_pred ------------ccCCCceEEEEeCcHHHHHH
Confidence 12345789999999999987
No 101
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=97.41 E-value=3.3e-05 Score=68.82 Aligned_cols=77 Identities=23% Similarity=0.311 Sum_probs=63.2
Q ss_pred ccccchhhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHH
Q psy11948 56 AFGIPILTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEE 130 (167)
Q Consensus 56 ~~~lp~l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (167)
..+.|.+..++. ++..||+.|..+ ..|+++++.||||+|||.+.++|++..+.+...
T Consensus 6 ~~l~~~v~~~~~~~~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~------------------ 67 (814)
T COG1201 6 NILDPRVREWFKRKFTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGK------------------ 67 (814)
T ss_pred hhcCHHHHHHHHHhcCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccC------------------
Confidence 345577777777 999999999665 889999999999999999999999999985430
Q ss_pred HHHHHHHhhhcchhhhhccccccceEEEccchhhhc
Q psy11948 131 VLEELEEESANTTEFVKKTRNKLYALILAPTRELAI 166 (167)
Q Consensus 131 ~~e~~~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~ 166 (167)
......+++|||+|.|+|..
T Consensus 68 ----------------~~~~~~i~~lYIsPLkALn~ 87 (814)
T COG1201 68 ----------------GKLEDGIYALYISPLKALNN 87 (814)
T ss_pred ----------------CCCCCceEEEEeCcHHHHHH
Confidence 12345689999999999974
No 102
>KOG0353|consensus
Probab=97.40 E-value=0.00029 Score=57.78 Aligned_cols=58 Identities=19% Similarity=0.275 Sum_probs=50.7
Q ss_pred ccCCCCHHHHHHHHH-CCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhh
Q psy11948 5 VKFNIPETIIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63 (167)
Q Consensus 5 ~~l~l~~~l~~~l~~-~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~ 63 (167)
++|+-+.+..+.|++ ....+..|.|..+|.+.+.| .|+++.-+||.||++||-+|.+.
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~-ed~~lil~tgggkslcyqlpal~ 132 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAG-EDAFLILPTGGGKSLCYQLPALC 132 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhcc-CceEEEEeCCCccchhhhhhHHh
Confidence 357778888888885 46788899999999999999 99999999999999999999864
No 103
>KOG0340|consensus
Probab=97.35 E-value=7e-05 Score=60.61 Aligned_cols=61 Identities=43% Similarity=0.704 Sum_probs=54.5
Q ss_pred ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcch
Q psy11948 68 KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 143 (167)
Q Consensus 68 ~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 143 (167)
++..||++|... ..|+|.+++|.||||||.+|.+|+++.++
T Consensus 26 ~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLs----------------------------------- 70 (442)
T KOG0340|consen 26 GIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLS----------------------------------- 70 (442)
T ss_pred cCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhc-----------------------------------
Confidence 778899998654 88999999999999999999999999996
Q ss_pred hhhhccccccceEEEccchhhhcC
Q psy11948 144 EFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 144 ~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
.....+.+||++||||||.|
T Consensus 71 ----edP~giFalvlTPTrELA~Q 90 (442)
T KOG0340|consen 71 ----EDPYGIFALVLTPTRELALQ 90 (442)
T ss_pred ----cCCCcceEEEecchHHHHHH
Confidence 23567899999999999987
No 104
>KOG0352|consensus
Probab=97.32 E-value=0.00019 Score=59.60 Aligned_cols=52 Identities=25% Similarity=0.427 Sum_probs=42.9
Q ss_pred HHHHHHHH-CCCC-CCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhh
Q psy11948 12 TIIRALYQ-KGFK-TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63 (167)
Q Consensus 12 ~l~~~l~~-~g~~-~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~ 63 (167)
.+..+|++ .|+. .-|+.|.+++..+..+..||.++.|||+||++||-+|.|-
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~ 59 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALV 59 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHH
Confidence 34556664 4654 4588999999999999899999999999999999998763
No 105
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.30 E-value=0.00024 Score=64.93 Aligned_cols=43 Identities=28% Similarity=0.311 Sum_probs=32.8
Q ss_pred CCCCCchHHHhHHHH---HHccCCcEEEEeecCCCcccccccchhhh
Q psy11948 21 GFKTPTKIQSMVMPS---ALLARKDIVGAAETGSGKTLAFGIPILTG 64 (167)
Q Consensus 21 g~~~pt~iQ~~~ip~---~l~~~~d~i~~a~tgsGKt~~~~lp~l~~ 64 (167)
|| ++-|-|.+.+.. .+..+..+++.|+||+|||++|++|.+..
T Consensus 255 ~~-e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~ 300 (928)
T PRK08074 255 KY-EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYF 300 (928)
T ss_pred CC-cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHH
Confidence 44 788888885433 34455889999999999999999998643
No 106
>KOG0951|consensus
Probab=97.25 E-value=0.00027 Score=65.01 Aligned_cols=58 Identities=31% Similarity=0.396 Sum_probs=49.1
Q ss_pred CCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhhc
Q psy11948 8 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67 (167)
Q Consensus 8 ~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~~ 67 (167)
.+|.|-..++. |......||.+..++++.+..++++|||||+|||...++.+++.+.+
T Consensus 295 elP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~ 352 (1674)
T KOG0951|consen 295 ELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGN 352 (1674)
T ss_pred CCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhc
Confidence 35666666666 45669999999999999888899999999999999999999888774
No 107
>KOG0337|consensus
Probab=97.25 E-value=0.00013 Score=60.32 Aligned_cols=80 Identities=39% Similarity=0.594 Sum_probs=69.0
Q ss_pred CCCcccccccchhhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcc
Q psy11948 50 GSGKTLAFGIPILTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGL 124 (167)
Q Consensus 50 gsGKt~~~~lp~l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~ 124 (167)
|+-+++..-.+++..+.+ .+..||++|.+. ..++|+++-+.||+|||.+|++|+++.++...
T Consensus 21 g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s------------- 87 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS------------- 87 (529)
T ss_pred CCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-------------
Confidence 445666666788888888 899999999876 78899999999999999999999999997532
Q ss_pred hhHHHHHHHHHHHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 125 EEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 125 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
....++||++||||||.|
T Consensus 88 -------------------------~~g~RalilsptreLa~q 105 (529)
T KOG0337|consen 88 -------------------------QTGLRALILSPTRELALQ 105 (529)
T ss_pred -------------------------ccccceeeccCcHHHHHH
Confidence 345899999999999987
No 108
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.25 E-value=6.8e-05 Score=65.05 Aligned_cols=75 Identities=36% Similarity=0.523 Sum_probs=57.6
Q ss_pred hhhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHH
Q psy11948 61 ILTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 135 (167)
Q Consensus 61 ~l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 135 (167)
++..+.. ++..|+.+|... ..++|+++.++||+|||++|++|+++.++......
T Consensus 20 l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~--------------------- 78 (572)
T PRK04537 20 LLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALA--------------------- 78 (572)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccc---------------------
Confidence 3444444 788999999765 78899999999999999999999999886422110
Q ss_pred HHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 136 EEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
......+++|||+||||||.|
T Consensus 79 -----------~~~~~~~raLIl~PTreLa~Q 99 (572)
T PRK04537 79 -----------DRKPEDPRALILAPTRELAIQ 99 (572)
T ss_pred -----------ccccCCceEEEEeCcHHHHHH
Confidence 011235799999999999987
No 109
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=97.23 E-value=6.9e-05 Score=66.83 Aligned_cols=69 Identities=30% Similarity=0.515 Sum_probs=56.1
Q ss_pred cchhhhhhc--ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHH
Q psy11948 59 IPILTGIVN--KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVL 132 (167)
Q Consensus 59 lp~l~~~~~--~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (167)
.|.+...+. ++..|+..|..+ ..|+|+++.++||||||++|++|+++.+..
T Consensus 22 ~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~----------------------- 78 (742)
T TIGR03817 22 HPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALAD----------------------- 78 (742)
T ss_pred CHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhh-----------------------
Confidence 344444444 788899999665 778999999999999999999999988852
Q ss_pred HHHHHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 133 EELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 133 e~~~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
...+++|||+||||||.|
T Consensus 79 -----------------~~~~~aL~l~PtraLa~q 96 (742)
T TIGR03817 79 -----------------DPRATALYLAPTKALAAD 96 (742)
T ss_pred -----------------CCCcEEEEEcChHHHHHH
Confidence 124689999999999986
No 110
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=97.22 E-value=7.4e-05 Score=62.97 Aligned_cols=68 Identities=40% Similarity=0.542 Sum_probs=55.2
Q ss_pred hhhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHH
Q psy11948 61 ILTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 135 (167)
Q Consensus 61 ~l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 135 (167)
++..+.. ++..|+++|..+ ..++|+++.++||+|||++|++|+++.+..
T Consensus 15 l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~-------------------------- 68 (460)
T PRK11776 15 LLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDV-------------------------- 68 (460)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhh--------------------------
Confidence 3444444 788899998765 678999999999999999999999987731
Q ss_pred HHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 136 EEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
....+++|||+||||||.|
T Consensus 69 -------------~~~~~~~lil~PtreLa~Q 87 (460)
T PRK11776 69 -------------KRFRVQALVLCPTRELADQ 87 (460)
T ss_pred -------------ccCCceEEEEeCCHHHHHH
Confidence 1235689999999999987
No 111
>KOG0354|consensus
Probab=97.20 E-value=0.00043 Score=60.96 Aligned_cols=37 Identities=30% Similarity=0.334 Sum_probs=26.9
Q ss_pred CCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchh
Q psy11948 24 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62 (167)
Q Consensus 24 ~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l 62 (167)
.+-.-|......+| | +++|+++|||+|||+....-+.
T Consensus 62 ~lR~YQ~eivq~AL-g-kNtii~lPTG~GKTfIAa~Vm~ 98 (746)
T KOG0354|consen 62 ELRNYQEELVQPAL-G-KNTIIALPTGSGKTFIAAVIMK 98 (746)
T ss_pred cccHHHHHHhHHhh-c-CCeEEEeecCCCccchHHHHHH
Confidence 45557777776666 6 8999999999999985544443
No 112
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=97.16 E-value=0.00054 Score=62.52 Aligned_cols=39 Identities=21% Similarity=0.164 Sum_probs=32.4
Q ss_pred HHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCccccc
Q psy11948 17 LYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 57 (167)
Q Consensus 17 l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~ 57 (167)
....+| .+-++|++++-.+-.| ..|+++|+||+|||+.-
T Consensus 113 ~~~~~F-~LD~fQ~~a~~~Ler~-esVlV~ApTssGKTvVa 151 (1041)
T COG4581 113 AREYPF-ELDPFQQEAIAILERG-ESVLVCAPTSSGKTVVA 151 (1041)
T ss_pred HHhCCC-CcCHHHHHHHHHHhCC-CcEEEEccCCCCcchHH
Confidence 345677 7889999999777777 99999999999999843
No 113
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=97.15 E-value=0.00018 Score=64.36 Aligned_cols=38 Identities=24% Similarity=0.262 Sum_probs=23.5
Q ss_pred CCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchh
Q psy11948 21 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62 (167)
Q Consensus 21 g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l 62 (167)
|. .|+++|-..-=.+..| -|+.+.||+|||+++.+|++
T Consensus 79 g~-~~~dvQlig~l~L~~G---~Iaem~TGeGKTLva~lpa~ 116 (830)
T PRK12904 79 GM-RHFDVQLIGGMVLHEG---KIAEMKTGEGKTLVATLPAY 116 (830)
T ss_pred CC-CCCccHHHhhHHhcCC---chhhhhcCCCcHHHHHHHHH
Confidence 44 6777777665444333 26666777777776666664
No 114
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=97.15 E-value=0.0002 Score=58.66 Aligned_cols=36 Identities=33% Similarity=0.370 Sum_probs=30.4
Q ss_pred HHHhHHHHHHccCC-cEEEEeecCCCcccccccchhh
Q psy11948 28 IQSMVMPSALLARK-DIVGAAETGSGKTLAFGIPILT 63 (167)
Q Consensus 28 iQ~~~ip~~l~~~~-d~i~~a~tgsGKt~~~~lp~l~ 63 (167)
+|.++++.+..+.. .++++++||||||.+|.+|++.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~ 37 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH 37 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 59999999998843 3788999999999998887664
No 115
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=97.13 E-value=0.0001 Score=61.54 Aligned_cols=72 Identities=35% Similarity=0.546 Sum_probs=55.5
Q ss_pred hhhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHH
Q psy11948 61 ILTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 135 (167)
Q Consensus 61 ~l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 135 (167)
++..+.. ++..|+..|..+ ..++|+++.++||+|||++|++|+++.++....
T Consensus 12 l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~----------------------- 68 (434)
T PRK11192 12 LLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPR----------------------- 68 (434)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccc-----------------------
Confidence 3333433 788888888665 678999999999999999999999988863210
Q ss_pred HHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 136 EEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
.....+++|||+||||||.|
T Consensus 69 ------------~~~~~~~~lil~Pt~eLa~Q 88 (434)
T PRK11192 69 ------------RKSGPPRILILTPTRELAMQ 88 (434)
T ss_pred ------------cCCCCceEEEECCcHHHHHH
Confidence 11234789999999999987
No 116
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.12 E-value=0.0001 Score=62.49 Aligned_cols=75 Identities=33% Similarity=0.450 Sum_probs=57.0
Q ss_pred hhhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHH
Q psy11948 61 ILTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 135 (167)
Q Consensus 61 ~l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 135 (167)
++..+.. ++..++..|... ..|+|+++.++||+|||++|++|+++.+.......
T Consensus 98 l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~--------------------- 156 (475)
T PRK01297 98 LMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPK--------------------- 156 (475)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCccc---------------------
Confidence 3344444 888899998765 77899999999999999999999999886431110
Q ss_pred HHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 136 EEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
......+++|||+||||||.|
T Consensus 157 -----------~~~~~~~~aLil~PtreLa~Q 177 (475)
T PRK01297 157 -----------ERYMGEPRALIIAPTRELVVQ 177 (475)
T ss_pred -----------ccccCCceEEEEeCcHHHHHH
Confidence 011235789999999999987
No 117
>PRK13767 ATP-dependent helicase; Provisional
Probab=97.11 E-value=0.00011 Score=66.60 Aligned_cols=78 Identities=24% Similarity=0.317 Sum_probs=60.6
Q ss_pred cccchhhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHH
Q psy11948 57 FGIPILTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEV 131 (167)
Q Consensus 57 ~~lp~l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (167)
.+.|.+..++. ++..++..|..+ ..++|++++||||+|||.+|++|+++.+......
T Consensus 17 ~l~~~v~~~~~~~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~------------------ 78 (876)
T PRK13767 17 LLRPYVREWFKEKFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGRE------------------ 78 (876)
T ss_pred hcCHHHHHHHHHccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccc------------------
Confidence 34577777776 778899998766 6789999999999999999999999888632111
Q ss_pred HHHHHHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 132 LEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 132 ~e~~~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
......+++|||+||||||.|
T Consensus 79 ---------------~~~~~~~~~LyIsPtraLa~d 99 (876)
T PRK13767 79 ---------------GELEDKVYCLYVSPLRALNND 99 (876)
T ss_pred ---------------cCCCCCeEEEEEcCHHHHHHH
Confidence 011346889999999999975
No 118
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=97.04 E-value=0.00014 Score=63.76 Aligned_cols=69 Identities=41% Similarity=0.635 Sum_probs=56.3
Q ss_pred chhhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHH
Q psy11948 60 PILTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEE 134 (167)
Q Consensus 60 p~l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 134 (167)
+++..+.. ++..|+..|... ..++|+++.|+||+|||++|++|+++.+..
T Consensus 16 ~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~------------------------- 70 (629)
T PRK11634 16 PILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDP------------------------- 70 (629)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhh-------------------------
Confidence 45555555 888899998665 678999999999999999999999977631
Q ss_pred HHHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 135 LEEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
....+++|||+||||||.|
T Consensus 71 --------------~~~~~~~LIL~PTreLa~Q 89 (629)
T PRK11634 71 --------------ELKAPQILVLAPTRELAVQ 89 (629)
T ss_pred --------------ccCCCeEEEEeCcHHHHHH
Confidence 1234789999999999987
No 119
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=97.02 E-value=0.00077 Score=58.31 Aligned_cols=50 Identities=30% Similarity=0.399 Sum_probs=44.1
Q ss_pred HHHHHHH-CCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhh
Q psy11948 13 IIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63 (167)
Q Consensus 13 l~~~l~~-~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~ 63 (167)
+...|+. .||...-+-|.++|..++.| +|+++.-|||.||++||-+|.+-
T Consensus 5 ~~~~L~~~fGy~~FR~gQ~evI~~~l~g-~d~lvvmPTGgGKSlCyQiPAll 55 (590)
T COG0514 5 AQQVLKQVFGYASFRPGQQEIIDALLSG-KDTLVVMPTGGGKSLCYQIPALL 55 (590)
T ss_pred HHHHHHHHhCccccCCCHHHHHHHHHcC-CcEEEEccCCCCcchHhhhHHHh
Confidence 3455664 58999999999999999999 99999999999999999999864
No 120
>KOG0334|consensus
Probab=97.01 E-value=0.00034 Score=63.08 Aligned_cols=73 Identities=42% Similarity=0.616 Sum_probs=57.0
Q ss_pred hhhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHH
Q psy11948 61 ILTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 135 (167)
Q Consensus 61 ~l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 135 (167)
++..+.+ ++..|+.+|..+ -+|+|+++.|.||+|||++|++|++..++.....
T Consensus 376 il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~---------------------- 433 (997)
T KOG0334|consen 376 ILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPL---------------------- 433 (997)
T ss_pred HHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCCh----------------------
Confidence 3344433 778999999655 6899999999999999999999999666532211
Q ss_pred HHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 136 EEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
.....|-+||++||||||.|
T Consensus 434 ------------~~gdGPi~li~aPtrela~Q 453 (997)
T KOG0334|consen 434 ------------EEGDGPIALILAPTRELAMQ 453 (997)
T ss_pred ------------hhCCCceEEEEcCCHHHHHH
Confidence 22457999999999999998
No 121
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=96.95 E-value=0.00036 Score=62.71 Aligned_cols=14 Identities=14% Similarity=0.048 Sum_probs=12.2
Q ss_pred ceEEEccchhhhcC
Q psy11948 154 YALILAPTRELAIQ 167 (167)
Q Consensus 154 ~aLIl~PTRELa~Q 167 (167)
.+.||+|+++||.|
T Consensus 125 ~VhIvT~ndyLA~R 138 (908)
T PRK13107 125 GVHVITVNDYLARR 138 (908)
T ss_pred CEEEEeCCHHHHHH
Confidence 38999999999975
No 122
>KOG0344|consensus
Probab=96.92 E-value=0.00039 Score=59.32 Aligned_cols=72 Identities=42% Similarity=0.645 Sum_probs=59.0
Q ss_pred hhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHH
Q psy11948 62 LTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELE 136 (167)
Q Consensus 62 l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 136 (167)
+..+.. .|..|+.+|..+ ..++|++.++|||+|||++|.+|++..+.....
T Consensus 148 l~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~------------------------ 203 (593)
T KOG0344|consen 148 LENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ------------------------ 203 (593)
T ss_pred HHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhc------------------------
Confidence 444444 899999999776 678999999999999999999999998864322
Q ss_pred HhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 137 EESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
.+.....+++||.||||||.|
T Consensus 204 ----------~~~~~gl~a~Il~ptreLa~Q 224 (593)
T KOG0344|consen 204 ----------EKHKVGLRALILSPTRELAAQ 224 (593)
T ss_pred ----------ccCccceEEEEecchHHHHHH
Confidence 133567899999999999987
No 123
>KOG0351|consensus
Probab=96.86 E-value=0.0025 Score=58.06 Aligned_cols=50 Identities=28% Similarity=0.292 Sum_probs=42.9
Q ss_pred HHHHHHH-HCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchh
Q psy11948 12 TIIRALY-QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62 (167)
Q Consensus 12 ~l~~~l~-~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l 62 (167)
++...+. ..|+...-+-|.++|-+.+.| +|+++..+||.||++||-+|.+
T Consensus 251 ~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~G-kd~fvlmpTG~GKSLCYQlPA~ 301 (941)
T KOG0351|consen 251 ELELLLKEVFGHKGFRPNQLEAINATLSG-KDCFVLMPTGGGKSLCYQLPAL 301 (941)
T ss_pred HHHHHHHHHhccccCChhHHHHHHHHHcC-CceEEEeecCCceeeEeecccc
Confidence 3444444 569999999999999988888 9999999999999999988875
No 124
>KOG0326|consensus
Probab=96.86 E-value=0.00048 Score=55.28 Aligned_cols=69 Identities=42% Similarity=0.683 Sum_probs=60.0
Q ss_pred chhhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHH
Q psy11948 60 PILTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEE 134 (167)
Q Consensus 60 p~l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 134 (167)
-++-.++. +|+.|.++|+.. ..|+|++..|..|+|||.+|.+|+++.+-
T Consensus 95 ~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid-------------------------- 148 (459)
T KOG0326|consen 95 ELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKID-------------------------- 148 (459)
T ss_pred HHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcC--------------------------
Confidence 45666666 999999999664 88999999999999999999999998874
Q ss_pred HHHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 135 LEEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
.....++++||+||||||.|
T Consensus 149 -------------~~~~~IQ~~ilVPtrelALQ 168 (459)
T KOG0326|consen 149 -------------PKKNVIQAIILVPTRELALQ 168 (459)
T ss_pred -------------ccccceeEEEEeecchhhHH
Confidence 34567999999999999987
No 125
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.85 E-value=0.00092 Score=59.34 Aligned_cols=34 Identities=15% Similarity=0.085 Sum_probs=23.6
Q ss_pred CCchHHHhHHHHHHccC--CcEEEEeecCCCccccc
Q psy11948 24 TPTKIQSMVMPSALLAR--KDIVGAAETGSGKTLAF 57 (167)
Q Consensus 24 ~pt~iQ~~~ip~~l~~~--~d~i~~a~tgsGKt~~~ 57 (167)
.+.|.|.+++..++..+ +.-+++.+||+|||+..
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlva 290 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 290 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHH
Confidence 46778888887777443 25677788888887643
No 126
>PTZ00424 helicase 45; Provisional
Probab=96.78 E-value=0.00028 Score=58.09 Aligned_cols=69 Identities=42% Similarity=0.539 Sum_probs=54.9
Q ss_pred chhhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHH
Q psy11948 60 PILTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEE 134 (167)
Q Consensus 60 p~l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 134 (167)
.++..+.. ++..|+..|..+ ..++|+++.+|||+|||.+|++|++..+..
T Consensus 38 ~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~------------------------- 92 (401)
T PTZ00424 38 DLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY------------------------- 92 (401)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC-------------------------
Confidence 34455555 788899998665 678999999999999999999999876531
Q ss_pred HHHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 135 LEEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
.....++|||+||||||.|
T Consensus 93 --------------~~~~~~~lil~Pt~~L~~Q 111 (401)
T PTZ00424 93 --------------DLNACQALILAPTRELAQQ 111 (401)
T ss_pred --------------CCCCceEEEECCCHHHHHH
Confidence 1234679999999999987
No 127
>PRK09694 helicase Cas3; Provisional
Probab=96.74 E-value=0.0013 Score=59.69 Aligned_cols=39 Identities=31% Similarity=0.171 Sum_probs=29.0
Q ss_pred CCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccch
Q psy11948 22 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 61 (167)
Q Consensus 22 ~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~ 61 (167)
...|+|+|..+..... ++.-+++.++||+|||.+.+...
T Consensus 284 ~~~p~p~Q~~~~~~~~-~pgl~ileApTGsGKTEAAL~~A 322 (878)
T PRK09694 284 GYQPRQLQTLVDALPL-QPGLTIIEAPTGSGKTEAALAYA 322 (878)
T ss_pred CCCChHHHHHHHhhcc-CCCeEEEEeCCCCCHHHHHHHHH
Confidence 3489999998754322 33568999999999999876543
No 128
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=96.66 E-value=0.0025 Score=56.05 Aligned_cols=48 Identities=29% Similarity=0.258 Sum_probs=37.3
Q ss_pred HCCCCCCchHHHhHHHH---HHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 19 QKGFKTPTKIQSMVMPS---ALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 19 ~~g~~~pt~iQ~~~ip~---~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
.....+|.+.|...+-. ++.++..+++.|+||+|||++|++|.+..-.
T Consensus 10 ~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~ 60 (654)
T COG1199 10 AFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAR 60 (654)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHH
Confidence 34456899999988744 3455466999999999999999999887654
No 129
>KOG0328|consensus
Probab=96.58 E-value=0.0012 Score=52.31 Aligned_cols=69 Identities=36% Similarity=0.611 Sum_probs=59.7
Q ss_pred chhhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHH
Q psy11948 60 PILTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEE 134 (167)
Q Consensus 60 p~l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 134 (167)
-++..++. +++.|..+|..+ ..|+|++.+|++|+|||.+|.+.+++.+.
T Consensus 37 dlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d-------------------------- 90 (400)
T KOG0328|consen 37 DLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLD-------------------------- 90 (400)
T ss_pred HHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecc--------------------------
Confidence 46667777 999999999776 78999999999999999999999987763
Q ss_pred HHHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 135 LEEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
...+..++|||+||||||.|
T Consensus 91 -------------~~~r~tQ~lilsPTRELa~Q 110 (400)
T KOG0328|consen 91 -------------ISVRETQALILSPTRELAVQ 110 (400)
T ss_pred -------------cccceeeEEEecChHHHHHH
Confidence 33566899999999999987
No 130
>KOG0350|consensus
Probab=96.57 E-value=0.001 Score=56.18 Aligned_cols=6 Identities=33% Similarity=0.739 Sum_probs=2.4
Q ss_pred eEEEcc
Q psy11948 155 ALILAP 160 (167)
Q Consensus 155 aLIl~P 160 (167)
.||-+|
T Consensus 273 IlVaTP 278 (620)
T KOG0350|consen 273 ILVATP 278 (620)
T ss_pred eEEcCc
Confidence 343334
No 131
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.55 E-value=0.0038 Score=55.51 Aligned_cols=43 Identities=30% Similarity=0.384 Sum_probs=32.3
Q ss_pred CCCCCchHHHhHHHHH---Hcc-----CCcEEEEeecCCCcccccccchhhh
Q psy11948 21 GFKTPTKIQSMVMPSA---LLA-----RKDIVGAAETGSGKTLAFGIPILTG 64 (167)
Q Consensus 21 g~~~pt~iQ~~~ip~~---l~~-----~~d~i~~a~tgsGKt~~~~lp~l~~ 64 (167)
|| ++-+-|.+.+-.+ +.+ +..+++-|+||+|||++|++|.+-.
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~ 73 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPI 73 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHH
Confidence 55 7788888855444 343 2568899999999999999998653
No 132
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=96.32 E-value=0.0074 Score=55.00 Aligned_cols=38 Identities=29% Similarity=0.308 Sum_probs=30.7
Q ss_pred HHHC-CCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccc
Q psy11948 17 LYQK-GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 17 l~~~-g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
+++. || .|+..|..=-..++.| ...-+.||||.|||..
T Consensus 75 F~k~~G~-~~ws~QR~WakR~~rg-~SFaiiAPTGvGKTTf 113 (1187)
T COG1110 75 FKKATGF-RPWSAQRVWAKRLVRG-KSFAIIAPTGVGKTTF 113 (1187)
T ss_pred HHHhhCC-CchHHHHHHHHHHHcC-CceEEEcCCCCchhHH
Confidence 4433 55 9999999877788888 8888999999999873
No 133
>KOG0339|consensus
Probab=96.27 E-value=0.0015 Score=55.42 Aligned_cols=93 Identities=32% Similarity=0.443 Sum_probs=70.1
Q ss_pred CcEEEEeecCCCcccccc---cchhhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccC
Q psy11948 41 KDIVGAAETGSGKTLAFG---IPILTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 112 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~~---lp~l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~ 112 (167)
-.+...++.--.+++..+ -.++..+.. ++.+|+.+|..+ ..++|+++.|.||||||.+|+.|++..++...+
T Consensus 211 lrv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~e 290 (731)
T KOG0339|consen 211 LRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPE 290 (731)
T ss_pred ceeccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhh
Confidence 344444444444444332 345555555 889999999665 789999999999999999999999999885433
Q ss_pred CCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 113 NPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
. .....|.+||+|||||||.|
T Consensus 291 L----------------------------------~~g~gPi~vilvPTrela~Q 311 (731)
T KOG0339|consen 291 L----------------------------------KPGEGPIGVILVPTRELASQ 311 (731)
T ss_pred h----------------------------------cCCCCCeEEEEeccHHHHHH
Confidence 2 34677999999999999987
No 134
>KOG0349|consensus
Probab=96.26 E-value=0.003 Score=52.79 Aligned_cols=42 Identities=40% Similarity=0.491 Sum_probs=35.1
Q ss_pred ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhh
Q psy11948 68 KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVN 109 (167)
Q Consensus 68 ~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~ 109 (167)
.+.-||.+|..+ ..+.|++.+|+||||||.+|.+|+++-..+
T Consensus 21 dw~lptdvqaeaiplilgggdvlmaaetgsgktgaf~lpilqiv~e 66 (725)
T KOG0349|consen 21 DWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIVWE 66 (725)
T ss_pred ccccccccccccccEEecCCcEEEEeccCCCCccceehhhHHHHHH
Confidence 455677777655 678999999999999999999999887653
No 135
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=96.22 E-value=0.0027 Score=51.57 Aligned_cols=25 Identities=40% Similarity=0.207 Sum_probs=22.3
Q ss_pred cEEEEeecCCCcccccccchhhhhh
Q psy11948 42 DIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 42 d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
|++++++||||||.+|+++++..+.
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~ 25 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIK 25 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987653
No 136
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=96.15 E-value=0.0052 Score=54.43 Aligned_cols=17 Identities=24% Similarity=0.301 Sum_probs=14.1
Q ss_pred cccceEEEccchhhhcC
Q psy11948 151 NKLYALILAPTRELAIQ 167 (167)
Q Consensus 151 ~~~~aLIl~PTRELa~Q 167 (167)
..+++|||||+++|..|
T Consensus 292 ~~~~vl~lvdR~~L~~Q 308 (667)
T TIGR00348 292 KNPKVFFVVDRRELDYQ 308 (667)
T ss_pred CCCeEEEEECcHHHHHH
Confidence 34689999999999877
No 137
>KOG0327|consensus
Probab=96.11 E-value=0.0022 Score=52.38 Aligned_cols=69 Identities=42% Similarity=0.585 Sum_probs=58.9
Q ss_pred chhhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHH
Q psy11948 60 PILTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEE 134 (167)
Q Consensus 60 p~l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 134 (167)
.+|..++. +|+.|+.+|..+ ..|.|++..+++|+|||++|++++++.+-
T Consensus 36 ~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD-------------------------- 89 (397)
T KOG0327|consen 36 SLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQID-------------------------- 89 (397)
T ss_pred HHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcC--------------------------
Confidence 56677777 999999999776 67899999999999999999999998772
Q ss_pred HHHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 135 LEEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
......+|||+.||||||.|
T Consensus 90 -------------~~~ke~qalilaPtreLa~q 109 (397)
T KOG0327|consen 90 -------------MSVKETQALILAPTRELAQQ 109 (397)
T ss_pred -------------cchHHHHHHHhcchHHHHHH
Confidence 22345789999999999987
No 138
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.35 E-value=0.015 Score=51.80 Aligned_cols=46 Identities=17% Similarity=0.092 Sum_probs=36.7
Q ss_pred CCCCCchHHHhHHHHHH---ccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 21 GFKTPTKIQSMVMPSAL---LARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 21 g~~~pt~iQ~~~ip~~l---~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
-|..+.|.|.+.+..+. ..+...++.+|||+|||++.+.|.+....
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~ 55 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQ 55 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHH
Confidence 36666899998775543 34489999999999999999999987655
No 139
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=95.33 E-value=0.0044 Score=46.07 Aligned_cols=63 Identities=48% Similarity=0.661 Sum_probs=48.5
Q ss_pred ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcch
Q psy11948 68 KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 143 (167)
Q Consensus 68 ~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 143 (167)
++..+...|... ..++++++.++||+|||..|++|++..+....
T Consensus 18 ~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~-------------------------------- 65 (203)
T cd00268 18 GFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP-------------------------------- 65 (203)
T ss_pred CCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc--------------------------------
Confidence 444555555443 45899999999999999999999998775321
Q ss_pred hhhhccccccceEEEccchhhhcC
Q psy11948 144 EFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 144 ~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
....++++|++||++|+.|
T Consensus 66 -----~~~~~~viii~p~~~L~~q 84 (203)
T cd00268 66 -----KKDGPQALILAPTRELALQ 84 (203)
T ss_pred -----ccCCceEEEEcCCHHHHHH
Confidence 1246889999999999976
No 140
>PRK02362 ski2-like helicase; Provisional
Probab=95.26 E-value=0.0042 Score=55.52 Aligned_cols=58 Identities=29% Similarity=0.353 Sum_probs=47.6
Q ss_pred ccCCCCcccccc-----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcc
Q psy11948 68 KLENPTEEDEND-----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 142 (167)
Q Consensus 68 ~~~~~~~~~~~~-----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 142 (167)
++..+++.|..+ ..++|+++++|||+|||++|.+|+++.+.
T Consensus 20 g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~---------------------------------- 65 (737)
T PRK02362 20 GIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA---------------------------------- 65 (737)
T ss_pred CCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh----------------------------------
Confidence 566677777554 46789999999999999999999998773
Q ss_pred hhhhhccccccceEEEccchhhhcC
Q psy11948 143 TEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 143 ~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
...++|||+||||||.|
T Consensus 66 --------~~~kal~i~P~raLa~q 82 (737)
T PRK02362 66 --------RGGKALYIVPLRALASE 82 (737)
T ss_pred --------cCCcEEEEeChHHHHHH
Confidence 12479999999999976
No 141
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=95.00 E-value=0.0066 Score=55.11 Aligned_cols=42 Identities=29% Similarity=0.450 Sum_probs=34.1
Q ss_pred ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhh
Q psy11948 68 KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVN 109 (167)
Q Consensus 68 ~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~ 109 (167)
....+...|..+ ..|+++++.++||||||.+|++|+++.+++
T Consensus 67 g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~ 112 (851)
T COG1205 67 GIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLR 112 (851)
T ss_pred ccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhh
Confidence 444455555444 678999999999999999999999999974
No 142
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=95.00 E-value=0.027 Score=44.27 Aligned_cols=33 Identities=27% Similarity=0.206 Sum_probs=22.7
Q ss_pred CchHHHhHHHHHHccCCcEEEEeecCCCcccccccc
Q psy11948 25 PTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60 (167)
Q Consensus 25 pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp 60 (167)
+|+-|..+|-. .. ..+++.|.-|||||.+...=
T Consensus 1 l~~eQ~~~i~~--~~-~~~lV~a~AGSGKT~~l~~r 33 (315)
T PF00580_consen 1 LTDEQRRIIRS--TE-GPLLVNAGAGSGKTTTLLER 33 (315)
T ss_dssp S-HHHHHHHHS---S-SEEEEEE-TTSSHHHHHHHH
T ss_pred CCHHHHHHHhC--CC-CCEEEEeCCCCCchHHHHHH
Confidence 46778888855 33 68999999999999855433
No 143
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=94.90 E-value=0.0094 Score=50.51 Aligned_cols=47 Identities=30% Similarity=0.319 Sum_probs=36.1
Q ss_pred ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhhhccccccceEEEc
Q psy11948 80 SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 159 (167)
Q Consensus 80 ~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~aLIl~ 159 (167)
...++.+++-|||=|||....+-+...+. ...+ .+|+|+
T Consensus 27 al~~NtLvvlPTGLGKT~IA~~V~~~~l~----------------------------------------~~~~-kvlfLA 65 (542)
T COG1111 27 ALFKNTLVVLPTGLGKTFIAAMVIANRLR----------------------------------------WFGG-KVLFLA 65 (542)
T ss_pred HhhcCeEEEecCCccHHHHHHHHHHHHHH----------------------------------------hcCC-eEEEec
Confidence 34568999999999999877766655442 1223 799999
Q ss_pred cchhhhcC
Q psy11948 160 PTRELAIQ 167 (167)
Q Consensus 160 PTRELa~Q 167 (167)
||+-|+.|
T Consensus 66 PTKPLV~Q 73 (542)
T COG1111 66 PTKPLVLQ 73 (542)
T ss_pred CCchHHHH
Confidence 99999987
No 144
>PRK00254 ski2-like helicase; Provisional
Probab=94.75 E-value=0.0071 Score=53.95 Aligned_cols=59 Identities=27% Similarity=0.297 Sum_probs=48.3
Q ss_pred ccCCCCcccccc-----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcc
Q psy11948 68 KLENPTEEDEND-----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 142 (167)
Q Consensus 68 ~~~~~~~~~~~~-----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 142 (167)
++..++..|..+ ..++|+++++|||+|||.+|.+|+++.+..
T Consensus 20 g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~--------------------------------- 66 (720)
T PRK00254 20 GIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR--------------------------------- 66 (720)
T ss_pred CCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh---------------------------------
Confidence 666777777544 567999999999999999999999877642
Q ss_pred hhhhhccccccceEEEccchhhhcC
Q psy11948 143 TEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 143 ~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
...++|||+|||+||.|
T Consensus 67 --------~~~~~l~l~P~~aLa~q 83 (720)
T PRK00254 67 --------EGGKAVYLVPLKALAEE 83 (720)
T ss_pred --------cCCeEEEEeChHHHHHH
Confidence 13479999999999976
No 145
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.40 E-value=0.01 Score=50.27 Aligned_cols=37 Identities=24% Similarity=0.311 Sum_probs=30.3
Q ss_pred ccCCCCcccccc----ccccceeeeecccCccceeeecchh
Q psy11948 68 KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPIL 104 (167)
Q Consensus 68 ~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i 104 (167)
++..++..|..+ ..++|+++.+|||+|||++|.+|.+
T Consensus 8 g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l 48 (470)
T TIGR00614 8 GLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPAL 48 (470)
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHH
Confidence 455666666543 6788999999999999999999987
No 146
>KOG0332|consensus
Probab=94.36 E-value=0.0081 Score=49.27 Aligned_cols=69 Identities=30% Similarity=0.516 Sum_probs=59.6
Q ss_pred chhhhhhc-ccCCCCcccccc------ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHH
Q psy11948 60 PILTGIVN-KLENPTEEDEND------SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVL 132 (167)
Q Consensus 60 p~l~~~~~-~~~~~~~~~~~~------~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (167)
-++..++. +|..|+.+|+.+ ...++++.++++|+|||.+|.+.++.+.-
T Consensus 100 ellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd------------------------ 155 (477)
T KOG0332|consen 100 ELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVD------------------------ 155 (477)
T ss_pred HHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcC------------------------
Confidence 56777777 999999999887 56799999999999999999999987663
Q ss_pred HHHHHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 133 EELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 133 e~~~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
.....|+++-|+||||||.|
T Consensus 156 ---------------~~~~~PQ~iCLaPtrELA~Q 175 (477)
T KOG0332|consen 156 ---------------PDVVVPQCICLAPTRELAPQ 175 (477)
T ss_pred ---------------ccccCCCceeeCchHHHHHH
Confidence 34567999999999999987
No 147
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=94.34 E-value=0.01 Score=42.45 Aligned_cols=47 Identities=43% Similarity=0.598 Sum_probs=39.7
Q ss_pred cccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhhhccccccceEEEcc
Q psy11948 81 ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 160 (167)
Q Consensus 81 ~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~aLIl~P 160 (167)
.++++++.++||+|||.++.+|++..+.+. ...+++|++|
T Consensus 13 ~~~~~li~aptGsGKT~~~~~~~l~~~~~~----------------------------------------~~~~~lii~P 52 (169)
T PF00270_consen 13 SGKNVLISAPTGSGKTLAYILPALNRLQEG----------------------------------------KDARVLIIVP 52 (169)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTT----------------------------------------SSSEEEEEES
T ss_pred cCCCEEEECCCCCccHHHHHHHHHhhhccC----------------------------------------CCceEEEEee
Confidence 568899999999999999999999877531 2348999999
Q ss_pred chhhhcC
Q psy11948 161 TRELAIQ 167 (167)
Q Consensus 161 TRELa~Q 167 (167)
|++|+.|
T Consensus 53 ~~~l~~q 59 (169)
T PF00270_consen 53 TRALAEQ 59 (169)
T ss_dssp SHHHHHH
T ss_pred ccccccc
Confidence 9999875
No 148
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=94.30 E-value=0.034 Score=48.80 Aligned_cols=58 Identities=21% Similarity=0.244 Sum_probs=36.1
Q ss_pred CCCCHHHHHHH-HHCCCCCCchHHHhHHHHHHccC-----CcEEEEeecCCCcccccccchhhhh
Q psy11948 7 FNIPETIIRAL-YQKGFKTPTKIQSMVMPSALLAR-----KDIVGAAETGSGKTLAFGIPILTGI 65 (167)
Q Consensus 7 l~l~~~l~~~l-~~~g~~~pt~iQ~~~ip~~l~~~-----~d~i~~a~tgsGKt~~~~lp~l~~~ 65 (167)
+..+..+++.+ ....| .+|.-|+.++..+..+- .+=++++.-|||||...++.++..+
T Consensus 245 ~~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai 308 (677)
T COG1200 245 LPANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAI 308 (677)
T ss_pred CCccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHH
Confidence 34455655554 57888 89999999999888551 1223455555555555555554433
No 149
>KOG4284|consensus
Probab=94.20 E-value=0.028 Score=49.34 Aligned_cols=70 Identities=27% Similarity=0.493 Sum_probs=58.9
Q ss_pred cchhhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHH
Q psy11948 59 IPILTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLE 133 (167)
Q Consensus 59 lp~l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 133 (167)
-+++..+.+ .|..|+.+|..+ ..+.|+++.|.+|+|||++|.+-+++.+-
T Consensus 34 r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~------------------------- 88 (980)
T KOG4284|consen 34 REVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLD------------------------- 88 (980)
T ss_pred HHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcC-------------------------
Confidence 366666666 888899888654 67889999999999999999998887774
Q ss_pred HHHHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 134 ELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
.+...+++||++||||||+|
T Consensus 89 --------------~~~~~~q~~Iv~PTREiaVQ 108 (980)
T KOG4284|consen 89 --------------SRSSHIQKVIVTPTREIAVQ 108 (980)
T ss_pred --------------cccCcceeEEEecchhhhhH
Confidence 44667999999999999998
No 150
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.14 E-value=0.082 Score=47.24 Aligned_cols=38 Identities=24% Similarity=0.176 Sum_probs=30.4
Q ss_pred CCchHHHhHHHHHHcc---CCcEEEEeecCCCcccccccch
Q psy11948 24 TPTKIQSMVMPSALLA---RKDIVGAAETGSGKTLAFGIPI 61 (167)
Q Consensus 24 ~pt~iQ~~~ip~~l~~---~~d~i~~a~tgsGKt~~~~lp~ 61 (167)
..++-|+.++..+... ....++.+.||||||..|+--+
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i 238 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAI 238 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHH
Confidence 5677899999887655 5778999999999998776544
No 151
>PF13245 AAA_19: Part of AAA domain
Probab=94.11 E-value=0.069 Score=33.86 Aligned_cols=15 Identities=33% Similarity=0.372 Sum_probs=10.8
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
-+++.++.|||||..
T Consensus 12 ~~vv~g~pGtGKT~~ 26 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTT 26 (76)
T ss_pred eEEEECCCCCCHHHH
Confidence 344588889998853
No 152
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=93.97 E-value=0.016 Score=52.71 Aligned_cols=29 Identities=28% Similarity=0.483 Sum_probs=26.1
Q ss_pred ccccceeeeecccCccceeeecchhhhhh
Q psy11948 80 SARKDIVGAAETGSGKTLAFGIPILTGIV 108 (167)
Q Consensus 80 ~~~~d~~~~a~tgsgkt~~~~~p~i~~~~ 108 (167)
..++|+++.++||+|||++|++|++..++
T Consensus 105 ~l~~gvIAeaqTGeGKTLAf~LP~l~~aL 133 (970)
T PRK12899 105 AMHKGFITEMQTGEGKTLTAVMPLYLNAL 133 (970)
T ss_pred hcCCCeEEEeCCCCChHHHHHHHHHHHHh
Confidence 56789999999999999999999997664
No 153
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=93.60 E-value=0.019 Score=45.78 Aligned_cols=30 Identities=30% Similarity=0.212 Sum_probs=25.6
Q ss_pred ccccceeeeecccCccceeeecchhhhhhh
Q psy11948 80 SARKDIVGAAETGSGKTLAFGIPILTGIVN 109 (167)
Q Consensus 80 ~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~ 109 (167)
..+..+++.+|||+|||+++++|.+..+..
T Consensus 25 ~~~~~~~~eapTGtGKTl~~L~~al~~~~~ 54 (289)
T smart00488 25 DRGKIGILESPTGTGKTLSLLCLTLTWLRS 54 (289)
T ss_pred HcCCcEEEECCCCcchhHHHHHHHHHHHHh
Confidence 356788999999999999999999876654
No 154
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=93.60 E-value=0.019 Score=45.78 Aligned_cols=30 Identities=30% Similarity=0.212 Sum_probs=25.6
Q ss_pred ccccceeeeecccCccceeeecchhhhhhh
Q psy11948 80 SARKDIVGAAETGSGKTLAFGIPILTGIVN 109 (167)
Q Consensus 80 ~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~ 109 (167)
..+..+++.+|||+|||+++++|.+..+..
T Consensus 25 ~~~~~~~~eapTGtGKTl~~L~~al~~~~~ 54 (289)
T smart00489 25 DRGKIGILESPTGTGKTLSLLCLTLTWLRS 54 (289)
T ss_pred HcCCcEEEECCCCcchhHHHHHHHHHHHHh
Confidence 356788999999999999999999876654
No 155
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=93.50 E-value=0.068 Score=48.13 Aligned_cols=42 Identities=24% Similarity=0.369 Sum_probs=31.1
Q ss_pred CCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 21 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 21 g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
|. .|+++|-.+-=.+..| + |+.-.||+|||+...+|.+...+
T Consensus 78 g~-~~~dvQlig~l~l~~G-~--iaEm~TGEGKTLvA~l~a~l~al 119 (796)
T PRK12906 78 GL-RPFDVQIIGGIVLHEG-N--IAEMKTGEGKTLTATLPVYLNAL 119 (796)
T ss_pred CC-CCchhHHHHHHHHhcC-C--cccccCCCCCcHHHHHHHHHHHH
Confidence 54 7888998876555544 3 78888999999888887765554
No 156
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.48 E-value=0.083 Score=42.83 Aligned_cols=40 Identities=35% Similarity=0.337 Sum_probs=30.6
Q ss_pred HHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccc
Q psy11948 15 RALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 15 ~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
+.+.+.|. .++-|...+-.+...+.+++++++||||||..
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl 160 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL 160 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH
Confidence 34555554 55678888877777768999999999999974
No 157
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=93.32 E-value=0.024 Score=45.98 Aligned_cols=25 Identities=40% Similarity=0.207 Sum_probs=22.0
Q ss_pred ceeeeecccCccceeeecchhhhhh
Q psy11948 84 DIVGAAETGSGKTLAFGIPILTGIV 108 (167)
Q Consensus 84 d~~~~a~tgsgkt~~~~~p~i~~~~ 108 (167)
|+++.+|||+|||.+|++|++..+.
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~ 25 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIK 25 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999999987653
No 158
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=93.32 E-value=0.017 Score=55.17 Aligned_cols=23 Identities=43% Similarity=0.369 Sum_probs=21.0
Q ss_pred EEeecCCCcccccccchhhhhhc
Q psy11948 45 GAAETGSGKTLAFGIPILTGIVN 67 (167)
Q Consensus 45 ~~a~tgsGKt~~~~lp~l~~~~~ 67 (167)
++|+||||||++|++|++.++..
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~ 23 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFR 23 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHh
Confidence 47999999999999999999875
No 159
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=93.11 E-value=0.072 Score=39.85 Aligned_cols=31 Identities=26% Similarity=0.274 Sum_probs=24.4
Q ss_pred CchHHHhHHHHHHccCCc-EEEEeecCCCcccc
Q psy11948 25 PTKIQSMVMPSALLARKD-IVGAAETGSGKTLA 56 (167)
Q Consensus 25 pt~iQ~~~ip~~l~~~~d-~i~~a~tgsGKt~~ 56 (167)
+.+-|..++..++.. .+ .++.+|.|+|||..
T Consensus 2 ln~~Q~~Ai~~~~~~-~~~~~i~GpPGTGKT~~ 33 (236)
T PF13086_consen 2 LNESQREAIQSALSS-NGITLIQGPPGTGKTTT 33 (236)
T ss_dssp --HHHHHHHHHHCTS-SE-EEEE-STTSSHHHH
T ss_pred CCHHHHHHHHHHHcC-CCCEEEECCCCCChHHH
Confidence 567899999888877 77 89999999999953
No 160
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.11 E-value=0.1 Score=41.82 Aligned_cols=43 Identities=37% Similarity=0.429 Sum_probs=31.2
Q ss_pred HHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccc
Q psy11948 12 TIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 12 ~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
..++.|.+.|. .++-|...+-.+..++.+++++++||||||..
T Consensus 106 ~tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl 148 (299)
T TIGR02782 106 FTLDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL 148 (299)
T ss_pred CCHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH
Confidence 34455555554 45667777766666668999999999999974
No 161
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=92.95 E-value=0.12 Score=38.73 Aligned_cols=55 Identities=24% Similarity=0.272 Sum_probs=35.5
Q ss_pred CchHHHhHHHHHHccC-CcEEEEeecCCCcccccccchhhhhhcccCCCCccccccccccceeeeecccC
Q psy11948 25 PTKIQSMVMPSALLAR-KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSARKDIVGAAETGS 93 (167)
Q Consensus 25 pt~iQ~~~ip~~l~~~-~d~i~~a~tgsGKt~~~~lp~l~~~~~~~~~~~~~~~~~~~~~d~~~~a~tgs 93 (167)
+++-|..++..++..+ +-++++++.|+|||... -.+...+. ..+..+++.++|+.
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l--~~~~~~~~------------~~g~~v~~~apT~~ 57 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL--KALAEALE------------AAGKRVIGLAPTNK 57 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH--HHHHHHHH------------HTT--EEEEESSHH
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH--HHHHHHHH------------hCCCeEEEECCcHH
Confidence 6788999999887553 35778899999999742 22322221 23577888888864
No 162
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=92.92 E-value=0.12 Score=41.91 Aligned_cols=41 Identities=29% Similarity=0.381 Sum_probs=31.3
Q ss_pred HHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCccc
Q psy11948 13 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 55 (167)
Q Consensus 13 l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~ 55 (167)
.++.|.+.|+ .++.|...+..+..++.+++++++||||||.
T Consensus 123 tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT 163 (319)
T PRK13894 123 TLDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTT 163 (319)
T ss_pred CHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH
Confidence 3455556665 4577888887766666999999999999995
No 163
>KOG0947|consensus
Probab=92.89 E-value=0.17 Score=46.40 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=31.1
Q ss_pred HCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccc
Q psy11948 19 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 19 ~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
...| +|-.+|++||-.+..| ..|+|.|.|.+|||+.
T Consensus 293 ~~pF-elD~FQk~Ai~~lerg-~SVFVAAHTSAGKTvV 328 (1248)
T KOG0947|consen 293 IYPF-ELDTFQKEAIYHLERG-DSVFVAAHTSAGKTVV 328 (1248)
T ss_pred hCCC-CccHHHHHHHHHHHcC-CeEEEEecCCCCcchH
Confidence 3455 6778999999888888 9999999999999985
No 164
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=92.66 E-value=0.03 Score=49.12 Aligned_cols=37 Identities=24% Similarity=0.376 Sum_probs=30.7
Q ss_pred ccCCCCcccccc----ccccceeeeecccCccceeeecchh
Q psy11948 68 KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPIL 104 (167)
Q Consensus 68 ~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i 104 (167)
++..+++.|... ..++|+++.+|||+|||++|.+|.+
T Consensus 22 G~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal 62 (607)
T PRK11057 22 GYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPAL 62 (607)
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHH
Confidence 556666666543 6789999999999999999999987
No 165
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=92.61 E-value=0.032 Score=49.76 Aligned_cols=27 Identities=30% Similarity=0.268 Sum_probs=22.7
Q ss_pred ccceeeeecccCccceeeecchhhhhh
Q psy11948 82 RKDIVGAAETGSGKTLAFGIPILTGIV 108 (167)
Q Consensus 82 ~~d~~~~a~tgsgkt~~~~~p~i~~~~ 108 (167)
+...++.|+||+|||++|++|.+-...
T Consensus 49 ~~~lviEAgTGtGKTlaYLlPai~~A~ 75 (697)
T PRK11747 49 GRILVIEAGTGVGKTLSYLLAGIPIAR 75 (697)
T ss_pred cceEEEECCCCcchhHHHHHHHHHHHH
Confidence 356789999999999999999986543
No 166
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=92.56 E-value=0.065 Score=40.65 Aligned_cols=45 Identities=18% Similarity=0.184 Sum_probs=31.4
Q ss_pred CCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhhc
Q psy11948 22 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67 (167)
Q Consensus 22 ~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~~ 67 (167)
+...|+-|..++.+++.. .-+++.++.|+|||+..+...++.+..
T Consensus 2 I~p~~~~Q~~~~~al~~~-~~v~~~G~AGTGKT~LA~a~Al~~v~~ 46 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNN-DLVIVNGPAGTGKTFLALAAALELVKE 46 (205)
T ss_dssp ----SHHHHHHHHHHHH--SEEEEE--TTSSTTHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHhC-CeEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 345688899999998855 778899999999999777666666653
No 167
>KOG1803|consensus
Probab=92.53 E-value=0.17 Score=44.06 Aligned_cols=55 Identities=16% Similarity=0.139 Sum_probs=40.1
Q ss_pred CCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhhcccCCCCccccccccccceeeeeccc
Q psy11948 24 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSARKDIVGAAETG 92 (167)
Q Consensus 24 ~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~~~~~~~~~~~~~~~~~~d~~~~a~tg 92 (167)
...+-|..++........-.++++|.|+|||.....-+.+.+. .+..++++|||.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk--------------~~k~VLVcaPSn 239 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVK--------------QKKRVLVCAPSN 239 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHH--------------cCCeEEEEcCch
Confidence 4456788888877777444678999999999876655554444 456788888874
No 168
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=92.47 E-value=0.1 Score=42.46 Aligned_cols=37 Identities=30% Similarity=0.242 Sum_probs=32.6
Q ss_pred CCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccc
Q psy11948 20 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 20 ~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
..|...++-|...+-.+..++.++++++.||||||..
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl 189 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL 189 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH
Confidence 3578899999999988888867999999999999973
No 169
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=92.38 E-value=0.037 Score=50.44 Aligned_cols=28 Identities=32% Similarity=0.413 Sum_probs=24.6
Q ss_pred ccccceeeeecccCccceeeecchhhhh
Q psy11948 80 SARKDIVGAAETGSGKTLAFGIPILTGI 107 (167)
Q Consensus 80 ~~~~d~~~~a~tgsgkt~~~~~p~i~~~ 107 (167)
..++++++.|+||+|||.+|++|++...
T Consensus 262 ~~~~~~~~eA~TG~GKT~ayLlp~~~~~ 289 (850)
T TIGR01407 262 THSEKSLIEAPTGTGKTLGYLLPALYYA 289 (850)
T ss_pred ccCCcEEEECCCCCchhHHHHHHHHHHh
Confidence 4578899999999999999999997654
No 170
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=92.17 E-value=0.038 Score=48.23 Aligned_cols=37 Identities=24% Similarity=0.433 Sum_probs=29.5
Q ss_pred ccCCCCcccccc----ccccceeeeecccCccceeeecchh
Q psy11948 68 KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPIL 104 (167)
Q Consensus 68 ~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i 104 (167)
++..+...|... ..++|+++.+|||+|||++|.+|.+
T Consensus 10 g~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal 50 (591)
T TIGR01389 10 GYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPAL 50 (591)
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHH
Confidence 455555555443 6789999999999999999999987
No 171
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=91.92 E-value=0.4 Score=43.22 Aligned_cols=69 Identities=17% Similarity=0.208 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhhcccCCCCccccccccccceeee
Q psy11948 9 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSARKDIVGA 88 (167)
Q Consensus 9 l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~~~~~~~~~~~~~~~~~~d~~~~ 88 (167)
+++..+......++ .+++-|..++..++.+.+-+++.+..|+|||.. +-.+...+. ..+..+++.
T Consensus 338 ~~~~~~~~~l~~~~-~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl--l~~i~~~~~------------~~g~~V~~~ 402 (744)
T TIGR02768 338 VSPPIVDAAIDQHY-RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM--LKAAREAWE------------AAGYRVIGA 402 (744)
T ss_pred CCHHHHHHHHhccC-CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH--HHHHHHHHH------------hCCCeEEEE
Confidence 45544444333344 689999999998887546678999999999853 222222221 124567777
Q ss_pred eccc
Q psy11948 89 AETG 92 (167)
Q Consensus 89 a~tg 92 (167)
||||
T Consensus 403 ApTg 406 (744)
T TIGR02768 403 ALSG 406 (744)
T ss_pred eCcH
Confidence 7775
No 172
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=91.57 E-value=0.21 Score=44.15 Aligned_cols=34 Identities=21% Similarity=0.210 Sum_probs=27.9
Q ss_pred CCchHHHhHHHHHHccCCcEEEEeecCCCccccc
Q psy11948 24 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 57 (167)
Q Consensus 24 ~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~ 57 (167)
.+++.|..++..++.....+++.++.|+|||...
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~ 190 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTL 190 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHH
Confidence 4588999999888765457889999999999643
No 173
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=91.51 E-value=0.14 Score=44.01 Aligned_cols=33 Identities=27% Similarity=0.250 Sum_probs=25.8
Q ss_pred CCchHHHhHHHHHHc----cCCcEEEEeecCCCcccc
Q psy11948 24 TPTKIQSMVMPSALL----ARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 24 ~pt~iQ~~~ip~~l~----~~~d~i~~a~tgsGKt~~ 56 (167)
.|+.-|-.||..+.. |.+.-.+-+.||||||++
T Consensus 12 ~PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT 48 (663)
T COG0556 12 KPAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFT 48 (663)
T ss_pred CCCCCcHHHHHHHHHHHhcCceeeEEeeeccCCchhH
Confidence 788888888877653 455777889999999974
No 174
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=91.42 E-value=0.091 Score=49.04 Aligned_cols=37 Identities=22% Similarity=0.341 Sum_probs=31.6
Q ss_pred ccCCCCccccc----cccccceeeeecccCccceeeecchh
Q psy11948 68 KLENPTEEDEN----DSARKDIVGAAETGSGKTLAFGIPIL 104 (167)
Q Consensus 68 ~~~~~~~~~~~----~~~~~d~~~~a~tgsgkt~~~~~p~i 104 (167)
++..+...|.. ...++|+++.+|||+|||++|.+|++
T Consensus 457 G~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL 497 (1195)
T PLN03137 457 GNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPAL 497 (1195)
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHH
Confidence 56667777754 37889999999999999999999997
No 175
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=91.39 E-value=0.4 Score=44.49 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=29.6
Q ss_pred CCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccc
Q psy11948 20 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 20 ~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
.|+ .+++-|..++..++.+..-+++.+..|+|||..
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~ 378 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM 378 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH
Confidence 454 689999999999888734467999999999974
No 176
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=91.37 E-value=0.15 Score=45.46 Aligned_cols=43 Identities=30% Similarity=0.236 Sum_probs=32.6
Q ss_pred CCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 20 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 20 ~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
.|. .|+++|..+.-.++.| -|+.-.||+|||+...+|.....+
T Consensus 75 lg~-r~ydvQlig~l~Ll~G---~VaEM~TGEGKTLvA~l~a~l~AL 117 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAG---DVIEMATGEGKTLAGAIAAAGYAL 117 (764)
T ss_pred cCC-CcchHHHHHHHHHhCC---CcccccCCCCHHHHHHHHHHHHHH
Confidence 355 8999999988777766 256788999999888887765444
No 177
>KOG0951|consensus
Probab=91.20 E-value=0.052 Score=50.78 Aligned_cols=40 Identities=28% Similarity=0.347 Sum_probs=33.4
Q ss_pred CCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhh
Q psy11948 24 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63 (167)
Q Consensus 24 ~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~ 63 (167)
.-.|+|.++++.+...+.++++.+++|||||.+..+.++.
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~ 1182 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR 1182 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC
Confidence 3478999999988887688999999999999987776654
No 178
>PRK01172 ski2-like helicase; Provisional
Probab=91.14 E-value=0.059 Score=47.79 Aligned_cols=54 Identities=20% Similarity=0.303 Sum_probs=42.4
Q ss_pred CCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhhh
Q psy11948 72 PTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVK 147 (167)
Q Consensus 72 ~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 147 (167)
++..|... ..++++++++|||+|||+++.+++++.+..
T Consensus 23 l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~-------------------------------------- 64 (674)
T PRK01172 23 LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA-------------------------------------- 64 (674)
T ss_pred CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh--------------------------------------
Confidence 44445433 567899999999999999999998876631
Q ss_pred ccccccceEEEccchhhhcC
Q psy11948 148 KTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 148 ~~~~~~~aLIl~PTRELa~Q 167 (167)
..++|||+|||+||.|
T Consensus 65 ----~~k~v~i~P~raLa~q 80 (674)
T PRK01172 65 ----GLKSIYIVPLRSLAME 80 (674)
T ss_pred ----CCcEEEEechHHHHHH
Confidence 2478999999999976
No 179
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=91.04 E-value=0.063 Score=48.78 Aligned_cols=45 Identities=27% Similarity=0.312 Sum_probs=37.7
Q ss_pred ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhhhccccccceEEEc
Q psy11948 80 SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 159 (167)
Q Consensus 80 ~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~aLIl~ 159 (167)
..+..+++.|+||+|||++|++|++.... ..++||++
T Consensus 262 ~~~~~~~~eA~tGtGKT~ayllp~l~~~~-------------------------------------------~~~vvI~t 298 (820)
T PRK07246 262 HDGPASFIEAQTGIGKTYGYLLPLLAQSD-------------------------------------------QRQIIVSV 298 (820)
T ss_pred hCCCcEEEECCCCCcHHHHHHHHHHHhcC-------------------------------------------CCcEEEEe
Confidence 45678899999999999999999875331 24799999
Q ss_pred cchhhhcC
Q psy11948 160 PTRELAIQ 167 (167)
Q Consensus 160 PTRELa~Q 167 (167)
|||||+.|
T Consensus 299 ~T~~Lq~Q 306 (820)
T PRK07246 299 PTKILQDQ 306 (820)
T ss_pred CcHHHHHH
Confidence 99999987
No 180
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.03 E-value=0.17 Score=40.24 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=13.3
Q ss_pred cEEEEeecCCCccccc
Q psy11948 42 DIVGAAETGSGKTLAF 57 (167)
Q Consensus 42 d~i~~a~tgsGKt~~~ 57 (167)
=+|+.+.|||||+...
T Consensus 129 LviiVGaTGSGKSTtm 144 (375)
T COG5008 129 LVIIVGATGSGKSTTM 144 (375)
T ss_pred eEEEECCCCCCchhhH
Confidence 4788999999998754
No 181
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=91.03 E-value=0.065 Score=49.33 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=23.9
Q ss_pred ccccceeeeecccCccceeeecchhhhh
Q psy11948 80 SARKDIVGAAETGSGKTLAFGIPILTGI 107 (167)
Q Consensus 80 ~~~~d~~~~a~tgsgkt~~~~~p~i~~~ 107 (167)
..+..+++.|+||+|||++|++|.+...
T Consensus 274 ~~~~~~~iEA~TGtGKTlaYLlpa~~~a 301 (928)
T PRK08074 274 RDSEHALIEAGTGTGKSLAYLLPAAYFA 301 (928)
T ss_pred hcCCCEEEECCCCCchhHHHHHHHHHHh
Confidence 4567788999999999999999997544
No 182
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=91.02 E-value=0.22 Score=45.94 Aligned_cols=77 Identities=17% Similarity=0.172 Sum_probs=41.2
Q ss_pred CCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhhc-ccCCCCccccccccccceeeeecccCccceeee
Q psy11948 22 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN-KLENPTEEDENDSARKDIVGAAETGSGKTLAFG 100 (167)
Q Consensus 22 ~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~~-~~~~~~~~~~~~~~~~d~~~~a~tgsgkt~~~~ 100 (167)
|+. -|+|.+|+.+++.-...+-...+. . ..|.-|++..-.. .... ..+-......++-+..+||+|||.+|+
T Consensus 5 ~e~-l~hQ~~av~ai~~~F~~~~~~~~~-~---~~~~n~~~~~~~~~~~~~--~~~~~~~~~~n~~~~M~TGtGKT~~~~ 77 (986)
T PRK15483 5 LEE-LPHQEQALAAILAAFTGIDIASAD-P---NHYANPLIKLRYENGIPG--RSRTRIDDKANIDIKMETGTGKTYVYT 77 (986)
T ss_pred ccc-ChhHHHHHHHHHHHhcCCCccCCc-c---ccccCcccccchhhcccc--ccccccCccceEEEEeCCCCCHHHHHH
Confidence 455 799999998876432222112221 1 1344455433321 0000 011111234778889999999999888
Q ss_pred cchhh
Q psy11948 101 IPILT 105 (167)
Q Consensus 101 ~p~i~ 105 (167)
--+++
T Consensus 78 ~~i~~ 82 (986)
T PRK15483 78 RLMYE 82 (986)
T ss_pred HHHHH
Confidence 76653
No 183
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=90.94 E-value=0.062 Score=47.36 Aligned_cols=47 Identities=34% Similarity=0.275 Sum_probs=38.9
Q ss_pred cccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhhhccccccceEEEcc
Q psy11948 81 ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 160 (167)
Q Consensus 81 ~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~aLIl~P 160 (167)
.++.+++.|+||+|||++|++|++..... ....++||++|
T Consensus 15 ~~~~lliEA~TGtGKTlAYLlpal~~~~~----------------------------------------~~~~rvlIstp 54 (636)
T TIGR03117 15 QKRIGMLEASTGVGKTLAMIMAALTMLKE----------------------------------------RPDQKIAIAVP 54 (636)
T ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHHHHh----------------------------------------ccCceEEEECC
Confidence 45778999999999999999999876641 11357999999
Q ss_pred chhhhcC
Q psy11948 161 TRELAIQ 167 (167)
Q Consensus 161 TRELa~Q 167 (167)
|++|+.|
T Consensus 55 T~~Lq~Q 61 (636)
T TIGR03117 55 TLALMGQ 61 (636)
T ss_pred cHHHHHH
Confidence 9999987
No 184
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.74 E-value=0.12 Score=46.08 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=25.6
Q ss_pred ccccceeeeecccCccceeeecchhhhhhh
Q psy11948 80 SARKDIVGAAETGSGKTLAFGIPILTGIVN 109 (167)
Q Consensus 80 ~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~ 109 (167)
..+...+..+|||+|||++.+.|.+.....
T Consensus 27 ~~~~~~llEsPTGtGKTlslL~~aL~~~~~ 56 (705)
T TIGR00604 27 DRGDEAILEMPSGTGKTISLLSLILAYQQE 56 (705)
T ss_pred ccCCceEEeCCCCCCccHHHHHHHHHHHHh
Confidence 456788999999999999999999986653
No 185
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=90.59 E-value=0.32 Score=35.95 Aligned_cols=33 Identities=39% Similarity=0.377 Sum_probs=26.2
Q ss_pred CCchHHHhHHHHHHccCCcEEEEeecCCCcccc
Q psy11948 24 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 24 ~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
..++-|...+...+..+..+++.++||+|||..
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 356667777777666668999999999999974
No 186
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=90.24 E-value=0.079 Score=48.05 Aligned_cols=33 Identities=24% Similarity=0.115 Sum_probs=23.8
Q ss_pred CCcccccc----cccc-ceeeeecccCccceeeecchh
Q psy11948 72 PTEEDEND----SARK-DIVGAAETGSGKTLAFGIPIL 104 (167)
Q Consensus 72 ~~~~~~~~----~~~~-d~~~~a~tgsgkt~~~~~p~i 104 (167)
|+..|... ..|+ ++++.++||+|||.+|.++++
T Consensus 16 PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll 53 (844)
T TIGR02621 16 PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLL 53 (844)
T ss_pred CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhc
Confidence 77777554 5566 677789999999996654444
No 187
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=89.98 E-value=0.34 Score=43.60 Aligned_cols=40 Identities=33% Similarity=0.204 Sum_probs=21.9
Q ss_pred chHHHhHHHHHHcc--CC-cEEEEeecCCCcccccccchhhhh
Q psy11948 26 TKIQSMVMPSALLA--RK-DIVGAAETGSGKTLAFGIPILTGI 65 (167)
Q Consensus 26 t~iQ~~~ip~~l~~--~~-d~i~~a~tgsGKt~~~~lp~l~~~ 65 (167)
.+.|..++..++.. .. .+++.||||.|||.+.+.+.....
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~ 239 (733)
T COG1203 197 YELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALL 239 (733)
T ss_pred hHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHh
Confidence 55666666544422 23 555666666666666655554443
No 188
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=89.86 E-value=0.61 Score=43.57 Aligned_cols=48 Identities=15% Similarity=-0.004 Sum_probs=31.0
Q ss_pred CCHHHHHHHHH-CCCCCCchHHHhHHHHHHcc-----CCcEEEEeecCCCccccc
Q psy11948 9 IPETIIRALYQ-KGFKTPTKIQSMVMPSALLA-----RKDIVGAAETGSGKTLAF 57 (167)
Q Consensus 9 l~~~l~~~l~~-~g~~~pt~iQ~~~ip~~l~~-----~~d~i~~a~tgsGKt~~~ 57 (167)
.+.+....+.+ .+| .-|+-|..||..+..+ .+|=++|+.-|-|||-..
T Consensus 579 ~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVA 632 (1139)
T COG1197 579 PDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVA 632 (1139)
T ss_pred CChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHH
Confidence 34455555553 466 6799999999998854 235566666666666533
No 189
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=89.77 E-value=0.86 Score=42.78 Aligned_cols=49 Identities=14% Similarity=0.183 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccc
Q psy11948 7 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 7 l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
.++++..++.....++ .+++-|..++..+..+.+-+++.+.-|+|||..
T Consensus 365 ~~v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~ 413 (1102)
T PRK13826 365 HGVREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM 413 (1102)
T ss_pred CCCCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH
Confidence 3455666665544444 789999999988776556788999999999963
No 190
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=89.72 E-value=0.22 Score=45.27 Aligned_cols=39 Identities=23% Similarity=0.257 Sum_probs=25.4
Q ss_pred CCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchh
Q psy11948 20 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62 (167)
Q Consensus 20 ~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l 62 (167)
.|. .|+++|-.+-=.+. ..-|+...||.|||++..+|..
T Consensus 73 lG~-r~ydvQlig~l~L~---~G~IaEm~TGEGKTL~a~l~ay 111 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVLN---DGKIAEMKTGEGKTLVATLPAY 111 (870)
T ss_pred hCC-CCCchHhhhhHhhc---CCccccccCCCCchHHHHHHHH
Confidence 355 57788877653332 3456777788888877777764
No 191
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=89.63 E-value=0.2 Score=43.71 Aligned_cols=26 Identities=38% Similarity=0.551 Sum_probs=24.1
Q ss_pred cccccceeeeecccCccceeeecchh
Q psy11948 79 DSARKDIVGAAETGSGKTLAFGIPIL 104 (167)
Q Consensus 79 ~~~~~d~~~~a~tgsgkt~~~~~p~i 104 (167)
...++|+++.-|||.||++.|-+|.+
T Consensus 29 ~l~g~d~lvvmPTGgGKSlCyQiPAl 54 (590)
T COG0514 29 LLSGKDTLVVMPTGGGKSLCYQIPAL 54 (590)
T ss_pred HHcCCcEEEEccCCCCcchHhhhHHH
Confidence 36789999999999999999999987
No 192
>KOG0952|consensus
Probab=89.43 E-value=0.12 Score=47.48 Aligned_cols=55 Identities=27% Similarity=0.385 Sum_probs=43.6
Q ss_pred ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhhhccccccceEEEc
Q psy11948 80 SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 159 (167)
Q Consensus 80 ~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~aLIl~ 159 (167)
.+..+.+++||||+|||..|++-+++.+......- .-.+...+.++|+
T Consensus 124 ~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~--------------------------------~i~k~~fKiVYIa 171 (1230)
T KOG0952|consen 124 KSNENMLICAPTGSGKTVLAELCILRTIKEHEEQG--------------------------------DIAKDDFKIVYIA 171 (1230)
T ss_pred cCCCCEEEECCCCCCchHHHHHHHHHHHHhhcccc--------------------------------ccccCCceEEEEe
Confidence 45688999999999999999999999987521111 1335667899999
Q ss_pred cchhhhc
Q psy11948 160 PTRELAI 166 (167)
Q Consensus 160 PTRELa~ 166 (167)
|+++||.
T Consensus 172 PmKALa~ 178 (1230)
T KOG0952|consen 172 PMKALAA 178 (1230)
T ss_pred chHHHHH
Confidence 9999984
No 193
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=89.26 E-value=0.077 Score=50.89 Aligned_cols=24 Identities=42% Similarity=0.371 Sum_probs=21.5
Q ss_pred eeecccCccceeeecchhhhhhhc
Q psy11948 87 GAAETGSGKTLAFGIPILTGIVNK 110 (167)
Q Consensus 87 ~~a~tgsgkt~~~~~p~i~~~~~~ 110 (167)
++||||||||++|++|+++.++..
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~ 24 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFRE 24 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhc
Confidence 479999999999999999999854
No 194
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=89.24 E-value=0.17 Score=34.00 Aligned_cols=25 Identities=56% Similarity=0.622 Sum_probs=20.0
Q ss_pred cEEEEeecCCCcccccccchhhhhh
Q psy11948 42 DIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 42 d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
.+++.++||+|||..+...+.....
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~ 26 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLD 26 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHh
Confidence 5789999999999988776665544
No 195
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=89.21 E-value=0.095 Score=46.33 Aligned_cols=53 Identities=21% Similarity=0.221 Sum_probs=43.3
Q ss_pred CCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhh
Q psy11948 71 NPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFV 146 (167)
Q Consensus 71 ~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 146 (167)
.|+++|..+ +.|+ ++.++||+|||++|.+|++....
T Consensus 103 ~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al-------------------------------------- 142 (656)
T PRK12898 103 RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL-------------------------------------- 142 (656)
T ss_pred CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh--------------------------------------
Confidence 677777554 4555 89999999999999999996543
Q ss_pred hccccccceEEEccchhhhcC
Q psy11948 147 KKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 147 ~~~~~~~~aLIl~PTRELa~Q 167 (167)
...+++||+||||||.|
T Consensus 143 ----~G~~v~VvTptreLA~q 159 (656)
T PRK12898 143 ----AGLPVHVITVNDYLAER 159 (656)
T ss_pred ----cCCeEEEEcCcHHHHHH
Confidence 24689999999999987
No 196
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=88.85 E-value=0.29 Score=44.68 Aligned_cols=40 Identities=18% Similarity=0.140 Sum_probs=24.5
Q ss_pred CCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 24 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 24 ~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
.|+++|-..==.+.. --|+...||+|||+...+|++-..+
T Consensus 82 ~~ydVQliGg~~Lh~---G~iaEM~TGEGKTLvA~l~a~l~al 121 (913)
T PRK13103 82 RHFDVQLIGGMTLHE---GKIAEMRTGEGKTLVGTLAVYLNAL 121 (913)
T ss_pred CcchhHHHhhhHhcc---CccccccCCCCChHHHHHHHHHHHH
Confidence 677777765433332 3456777777777777777654433
No 197
>PRK10436 hypothetical protein; Provisional
Probab=88.66 E-value=0.44 Score=40.56 Aligned_cols=31 Identities=32% Similarity=0.329 Sum_probs=20.1
Q ss_pred hHHHhHHHHHHc-cCCcEEEEeecCCCccccc
Q psy11948 27 KIQSMVMPSALL-ARKDIVGAAETGSGKTLAF 57 (167)
Q Consensus 27 ~iQ~~~ip~~l~-~~~d~i~~a~tgsGKt~~~ 57 (167)
+-|...|..++. ..--++++++||||||...
T Consensus 204 ~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL 235 (462)
T PRK10436 204 PAQLAQFRQALQQPQGLILVTGPTGSGKTVTL 235 (462)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCChHHHH
Confidence 334444544443 2235889999999999864
No 198
>KOG0949|consensus
Probab=88.50 E-value=0.76 Score=42.49 Aligned_cols=31 Identities=29% Similarity=0.290 Sum_probs=24.0
Q ss_pred CCchHHHhHHHHHHccCCcEEEEeecCCCccc
Q psy11948 24 TPTKIQSMVMPSALLARKDIVGAAETGSGKTL 55 (167)
Q Consensus 24 ~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~ 55 (167)
.|-..|.+.+..+=.+ ...++.|||.+|||+
T Consensus 511 ~Pd~WQ~elLDsvDr~-eSavIVAPTSaGKTf 541 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRN-ESAVIVAPTSAGKTF 541 (1330)
T ss_pred CCcHHHHHHhhhhhcc-cceEEEeeccCCcee
Confidence 6777888877655555 788888899999886
No 199
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=88.20 E-value=0.92 Score=40.79 Aligned_cols=34 Identities=21% Similarity=0.199 Sum_probs=29.5
Q ss_pred CCCCCCchHHHhHHHHHHccCCcEEEEeecCCCccc
Q psy11948 20 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 55 (167)
Q Consensus 20 ~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~ 55 (167)
.++ .+++-|+.++..+..+ +-+++.+..|+|||.
T Consensus 320 ~~~-~l~~~Q~~Ai~~~~~~-~~~iitGgpGTGKTt 353 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTAIQH-KVVILTGGPGTGKTT 353 (720)
T ss_pred cCC-CCCHHHHHHHHHHHhC-CeEEEECCCCCCHHH
Confidence 454 7899999999988877 789999999999996
No 200
>KOG0948|consensus
Probab=88.10 E-value=0.48 Score=42.55 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=27.3
Q ss_pred CCchHHHhHHHHHHccCCcEEEEeecCCCcccccccch
Q psy11948 24 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 61 (167)
Q Consensus 24 ~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~ 61 (167)
.+-|+|..+|--+-.+ ..|+++|-|.+|||...--.+
T Consensus 129 ~LDpFQ~~aI~Cidr~-eSVLVSAHTSAGKTVVAeYAI 165 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRG-ESVLVSAHTSAGKTVVAEYAI 165 (1041)
T ss_pred ccCchHhhhhhhhcCC-ceEEEEeecCCCcchHHHHHH
Confidence 4557899988655455 899999999999997544333
No 201
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.06 E-value=0.92 Score=36.59 Aligned_cols=35 Identities=34% Similarity=0.295 Sum_probs=29.0
Q ss_pred CCCCchHHHhHHHHHHccCCcEEEEeecCCCcccc
Q psy11948 22 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 22 ~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
+..+++.|..-+-.++..+++++++++||||||..
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~ 159 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTTL 159 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH
Confidence 45677778777777777779999999999999975
No 202
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.99 E-value=0.49 Score=38.16 Aligned_cols=16 Identities=38% Similarity=0.480 Sum_probs=13.1
Q ss_pred cEEEEeecCCCccccc
Q psy11948 42 DIVGAAETGSGKTLAF 57 (167)
Q Consensus 42 d~i~~a~tgsGKt~~~ 57 (167)
=|+|.++|||||+...
T Consensus 127 LILVTGpTGSGKSTTl 142 (353)
T COG2805 127 LILVTGPTGSGKSTTL 142 (353)
T ss_pred eEEEeCCCCCcHHHHH
Confidence 4778999999998753
No 203
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=87.33 E-value=0.18 Score=47.61 Aligned_cols=55 Identities=27% Similarity=0.288 Sum_probs=43.4
Q ss_pred CCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhh
Q psy11948 71 NPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFV 146 (167)
Q Consensus 71 ~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 146 (167)
.|+..|... ..++|+++.||||+|||. |++|+...+.
T Consensus 78 ~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~-------------------------------------- 118 (1171)
T TIGR01054 78 EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLA-------------------------------------- 118 (1171)
T ss_pred CCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHH--------------------------------------
Confidence 577777544 678999999999999996 7777765442
Q ss_pred hccccccceEEEccchhhhcC
Q psy11948 147 KKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 147 ~~~~~~~~aLIl~PTRELa~Q 167 (167)
...+++|||+||||||.|
T Consensus 119 ---~~g~~vLIL~PTreLa~Q 136 (1171)
T TIGR01054 119 ---KKGKRCYIILPTTLLVIQ 136 (1171)
T ss_pred ---hcCCeEEEEeCHHHHHHH
Confidence 124689999999999987
No 204
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=86.96 E-value=0.66 Score=37.90 Aligned_cols=42 Identities=24% Similarity=0.222 Sum_probs=30.8
Q ss_pred HHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccc
Q psy11948 13 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 13 l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
.++.|.+.|+ .++-+...+..+..++.+++++++||+|||..
T Consensus 153 tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl 194 (340)
T TIGR03819 153 TLDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL 194 (340)
T ss_pred CHHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH
Confidence 3555666665 44566666766666768999999999999873
No 205
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=86.59 E-value=0.61 Score=38.60 Aligned_cols=17 Identities=35% Similarity=0.200 Sum_probs=14.4
Q ss_pred CcEEEEeecCCCccccc
Q psy11948 41 KDIVGAAETGSGKTLAF 57 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~ 57 (167)
.-++++++||||||...
T Consensus 150 GlilI~G~TGSGKTT~l 166 (372)
T TIGR02525 150 GLGLICGETGSGKSTLA 166 (372)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46889999999999753
No 206
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=86.54 E-value=0.19 Score=44.33 Aligned_cols=28 Identities=36% Similarity=0.479 Sum_probs=24.1
Q ss_pred cccceeeeecccCccceeeecchhhhhh
Q psy11948 81 ARKDIVGAAETGSGKTLAFGIPILTGIV 108 (167)
Q Consensus 81 ~~~d~~~~a~tgsgkt~~~~~p~i~~~~ 108 (167)
.+.-+++.||||+|||++|++|.+....
T Consensus 33 ~~~~~~iEapTGtGKTl~yL~~al~~~~ 60 (654)
T COG1199 33 GGEGLLIEAPTGTGKTLAYLLPALAYAR 60 (654)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHHHHH
Confidence 3444899999999999999999998774
No 207
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=86.46 E-value=0.59 Score=38.04 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=20.0
Q ss_pred hHHHHHHccCCcEEEEeecCCCcccc
Q psy11948 31 MVMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 31 ~~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
..+..+..++.+++++++||||||..
T Consensus 151 ~~L~~~v~~~~nili~G~tgSGKTTl 176 (332)
T PRK13900 151 EFLEHAVISKKNIIISGGTSTGKTTF 176 (332)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHH
Confidence 33444455669999999999999974
No 208
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=86.40 E-value=0.2 Score=45.50 Aligned_cols=45 Identities=22% Similarity=0.211 Sum_probs=37.3
Q ss_pred cccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhhhccccccceEEEcc
Q psy11948 81 ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 160 (167)
Q Consensus 81 ~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~aLIl~P 160 (167)
.++++++.++||+|||..|.+++++... ...+++|++|
T Consensus 19 ~~~~vvv~A~TGSGKTt~~pl~lL~~~~------------------------------------------~~~~ilvlqP 56 (812)
T PRK11664 19 TAPQVLLKAPTGAGKSTWLPLQLLQHGG------------------------------------------INGKIIMLEP 56 (812)
T ss_pred hCCCEEEEcCCCCCHHHHHHHHHHHcCC------------------------------------------cCCeEEEECC
Confidence 5679999999999999999998885431 1247999999
Q ss_pred chhhhcC
Q psy11948 161 TRELAIQ 167 (167)
Q Consensus 161 TRELa~Q 167 (167)
||++|.|
T Consensus 57 rR~aA~q 63 (812)
T PRK11664 57 RRLAARN 63 (812)
T ss_pred hHHHHHH
Confidence 9999986
No 209
>COG4889 Predicted helicase [General function prediction only]
Probab=86.37 E-value=0.41 Score=43.84 Aligned_cols=45 Identities=24% Similarity=0.206 Sum_probs=30.1
Q ss_pred HHHHHHHHHCCCCCCchHHHhHHHHHHccCCc----EEEEeecCCCcccc
Q psy11948 11 ETIIRALYQKGFKTPTKIQSMVMPSALLARKD----IVGAAETGSGKTLA 56 (167)
Q Consensus 11 ~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d----~i~~a~tgsGKt~~ 56 (167)
.++..+|.-+.=.+|.|+|+.+|.+.+.|..+ -++ ..-|+|||+.
T Consensus 148 ~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLI-MAcGTGKTfT 196 (1518)
T COG4889 148 TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLI-MACGTGKTFT 196 (1518)
T ss_pred cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEE-EecCCCccch
Confidence 35566666666679999999999998876332 122 2236777764
No 210
>PRK09401 reverse gyrase; Reviewed
Probab=86.29 E-value=0.18 Score=47.53 Aligned_cols=55 Identities=27% Similarity=0.278 Sum_probs=41.9
Q ss_pred CCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhh
Q psy11948 71 NPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFV 146 (167)
Q Consensus 71 ~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 146 (167)
.|+..|... ..++|+++.||||+|||. |++++...+.
T Consensus 80 ~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~-------------------------------------- 120 (1176)
T PRK09401 80 KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLA-------------------------------------- 120 (1176)
T ss_pred CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHH--------------------------------------
Confidence 566666443 678999999999999995 6666554332
Q ss_pred hccccccceEEEccchhhhcC
Q psy11948 147 KKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 147 ~~~~~~~~aLIl~PTRELa~Q 167 (167)
....++|||+||||||.|
T Consensus 121 ---~~g~~alIL~PTreLa~Q 138 (1176)
T PRK09401 121 ---KKGKKSYIIFPTRLLVEQ 138 (1176)
T ss_pred ---hcCCeEEEEeccHHHHHH
Confidence 124689999999999987
No 211
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=86.29 E-value=0.2 Score=44.57 Aligned_cols=43 Identities=33% Similarity=0.387 Sum_probs=37.8
Q ss_pred cceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhhhccccccceEEEccch
Q psy11948 83 KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 162 (167)
Q Consensus 83 ~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~aLIl~PTR 162 (167)
.+.+++++||||||++|++|++..+. ...+++||+|||
T Consensus 283 ~~~Ll~~~TGSGKT~va~~~il~~~~------------------------------------------~g~q~lilaPT~ 320 (681)
T PRK10917 283 MNRLLQGDVGSGKTVVAALAALAAIE------------------------------------------AGYQAALMAPTE 320 (681)
T ss_pred ceEEEECCCCCcHHHHHHHHHHHHHH------------------------------------------cCCeEEEEeccH
Confidence 57899999999999999999987663 246799999999
Q ss_pred hhhcC
Q psy11948 163 ELAIQ 167 (167)
Q Consensus 163 ELa~Q 167 (167)
+||.|
T Consensus 321 ~LA~Q 325 (681)
T PRK10917 321 ILAEQ 325 (681)
T ss_pred HHHHH
Confidence 99987
No 212
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=86.14 E-value=0.65 Score=38.03 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=20.1
Q ss_pred hHHHHHHccCCcEEEEeecCCCcccc
Q psy11948 31 MVMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 31 ~~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
..+..+..++.+++++++||||||..
T Consensus 153 ~~l~~~v~~~~nilI~G~tGSGKTTl 178 (344)
T PRK13851 153 AFLHACVVGRLTMLLCGPTGSGKTTM 178 (344)
T ss_pred HHHHHHHHcCCeEEEECCCCccHHHH
Confidence 34444555568999999999999974
No 213
>KOG0352|consensus
Probab=86.01 E-value=0.44 Score=40.19 Aligned_cols=25 Identities=32% Similarity=0.619 Sum_probs=23.0
Q ss_pred ccccceeeeecccCccceeeecchh
Q psy11948 80 SARKDIVGAAETGSGKTLAFGIPIL 104 (167)
Q Consensus 80 ~~~~d~~~~a~tgsgkt~~~~~p~i 104 (167)
....|+.++.|||+||.+.|-+|.+
T Consensus 34 K~k~DVyVsMPTGaGKSLCyQLPaL 58 (641)
T KOG0352|consen 34 KRKCDVYVSMPTGAGKSLCYQLPAL 58 (641)
T ss_pred hccCcEEEeccCCCchhhhhhchHH
Confidence 4679999999999999999999987
No 214
>KOG0329|consensus
Probab=86.00 E-value=0.47 Score=37.46 Aligned_cols=69 Identities=32% Similarity=0.486 Sum_probs=56.7
Q ss_pred chhhhhhc-ccCCCCcccc----ccccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHH
Q psy11948 60 PILTGIVN-KLENPTEEDE----NDSARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEE 134 (167)
Q Consensus 60 p~l~~~~~-~~~~~~~~~~----~~~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 134 (167)
-++..+.. +++.|.+.|. ++-.|.|+++.|.+|-|||.+|.+..++.+-
T Consensus 52 ellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqie-------------------------- 105 (387)
T KOG0329|consen 52 ELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIE-------------------------- 105 (387)
T ss_pred HHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcC--------------------------
Confidence 34555544 8999988874 3467899999999999999999999998884
Q ss_pred HHHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 135 LEEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
+..+.+.+|++|.|||||.|
T Consensus 106 -------------pv~g~vsvlvmchtrelafq 125 (387)
T KOG0329|consen 106 -------------PVDGQVSVLVMCHTRELAFQ 125 (387)
T ss_pred -------------CCCCeEEEEEEeccHHHHHH
Confidence 33456889999999999987
No 215
>KOG0925|consensus
Probab=85.94 E-value=1.9 Score=37.18 Aligned_cols=55 Identities=25% Similarity=0.201 Sum_probs=41.0
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccc
Q psy11948 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
|.-|.+++.++.-.+.|++. -.-|-=-|+..+-.++..++-+++.+.||||||.-
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R-~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQ 78 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKR-RELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQ 78 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHH-hcCchHHhHHHHHHHHhcCceEEEEecCCCCcccc
Confidence 35688888998888877764 33454456666666666658899999999999975
No 216
>PHA02653 RNA helicase NPH-II; Provisional
Probab=85.87 E-value=0.34 Score=43.18 Aligned_cols=52 Identities=19% Similarity=0.101 Sum_probs=38.3
Q ss_pred ccccceeeeecccCcccee---------eecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhhhccc
Q psy11948 80 SARKDIVGAAETGSGKTLA---------FGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTR 150 (167)
Q Consensus 80 ~~~~d~~~~a~tgsgkt~~---------~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 150 (167)
..++|+++.|+||+|||.+ |++|.+..+.+-. ...
T Consensus 177 ~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~------------------------------------~~~ 220 (675)
T PHA02653 177 ISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID------------------------------------PNF 220 (675)
T ss_pred HhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc------------------------------------ccc
Confidence 6789999999999999987 6666655442100 012
Q ss_pred cccceEEEccchhhhcC
Q psy11948 151 NKLYALILAPTRELAIQ 167 (167)
Q Consensus 151 ~~~~aLIl~PTRELa~Q 167 (167)
...+++|++||||||.|
T Consensus 221 ~~~~ilvt~PrreLa~q 237 (675)
T PHA02653 221 IERPIVLSLPRVALVRL 237 (675)
T ss_pred CCcEEEEECcHHHHHHH
Confidence 34589999999999986
No 217
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=85.87 E-value=0.2 Score=41.04 Aligned_cols=22 Identities=50% Similarity=0.679 Sum_probs=18.7
Q ss_pred ceeeeecccCccceeeecchhh
Q psy11948 84 DIVGAAETGSGKTLAFGIPILT 105 (167)
Q Consensus 84 d~~~~a~tgsgkt~~~~~p~i~ 105 (167)
.+++.+|||+|||.+|++|++.
T Consensus 16 ~~~i~apTGsGKT~~~~~~~l~ 37 (357)
T TIGR03158 16 IIFNTAPTGAGKTLAWLTPLLH 37 (357)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3688999999999998887764
No 218
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=85.65 E-value=0.43 Score=39.32 Aligned_cols=23 Identities=39% Similarity=0.442 Sum_probs=19.7
Q ss_pred cEEEEeecCCCcccccccchhhh
Q psy11948 42 DIVGAAETGSGKTLAFGIPILTG 64 (167)
Q Consensus 42 d~i~~a~tgsGKt~~~~lp~l~~ 64 (167)
++++.++||||||.++.+|-+..
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~ 23 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLT 23 (384)
T ss_pred CeeEecCCCCCCccEEEccchhc
Confidence 46899999999999999887654
No 219
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=85.17 E-value=0.88 Score=40.47 Aligned_cols=33 Identities=27% Similarity=0.280 Sum_probs=25.7
Q ss_pred CCchHHHhHHHHHHcc----CCcEEEEeecCCCcccc
Q psy11948 24 TPTKIQSMVMPSALLA----RKDIVGAAETGSGKTLA 56 (167)
Q Consensus 24 ~pt~iQ~~~ip~~l~~----~~d~i~~a~tgsGKt~~ 56 (167)
.|+..|..+|..+..+ .+..++.+-||||||+.
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~ 45 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFT 45 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHH
Confidence 7999999999887543 23566888899999874
No 220
>COG1204 Superfamily II helicase [General function prediction only]
Probab=84.87 E-value=0.27 Score=44.44 Aligned_cols=47 Identities=28% Similarity=0.383 Sum_probs=40.5
Q ss_pred ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhhhccccccceEEEc
Q psy11948 80 SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 159 (167)
Q Consensus 80 ~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~aLIl~ 159 (167)
..+.|+++++|||+|||+..++.+++.+.+ ..-++++||
T Consensus 45 ~~~~N~li~aPTgsGKTlIA~lai~~~l~~-----------------------------------------~~~k~vYiv 83 (766)
T COG1204 45 LSDENVLISAPTGSGKTLIALLAILSTLLE-----------------------------------------GGGKVVYIV 83 (766)
T ss_pred cCCCcEEEEcCCCCchHHHHHHHHHHHHHh-----------------------------------------cCCcEEEEe
Confidence 347999999999999999999999988863 145799999
Q ss_pred cchhhhcC
Q psy11948 160 PTRELAIQ 167 (167)
Q Consensus 160 PTRELa~Q 167 (167)
|+|+||.|
T Consensus 84 PlkALa~E 91 (766)
T COG1204 84 PLKALAEE 91 (766)
T ss_pred ChHHHHHH
Confidence 99999964
No 221
>PRK13764 ATPase; Provisional
Probab=84.82 E-value=0.73 Score=40.53 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=14.9
Q ss_pred CCcEEEEeecCCCcccc
Q psy11948 40 RKDIVGAAETGSGKTLA 56 (167)
Q Consensus 40 ~~d~i~~a~tgsGKt~~ 56 (167)
+..++++++||||||..
T Consensus 257 ~~~ILIsG~TGSGKTTl 273 (602)
T PRK13764 257 AEGILIAGAPGAGKSTF 273 (602)
T ss_pred CCEEEEECCCCCCHHHH
Confidence 37899999999999973
No 222
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=84.71 E-value=0.85 Score=37.55 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=14.7
Q ss_pred CcEEEEeecCCCccccc
Q psy11948 41 KDIVGAAETGSGKTLAF 57 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~ 57 (167)
.-++++++||||||...
T Consensus 135 glilI~GpTGSGKTTtL 151 (358)
T TIGR02524 135 GIVFITGATGSGKSTLL 151 (358)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 67999999999999743
No 223
>KOG1802|consensus
Probab=84.59 E-value=0.97 Score=40.18 Aligned_cols=46 Identities=15% Similarity=0.089 Sum_probs=36.4
Q ss_pred HHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchh
Q psy11948 16 ALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62 (167)
Q Consensus 16 ~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l 62 (167)
.+...++.++..-|..|+..++.. -=.++++|.|+|||..-.--+.
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~r-plsLIQGPPGTGKTvtsa~IVy 447 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQR-PLSLIQGPPGTGKTVTSATIVY 447 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcC-CceeeecCCCCCceehhHHHHH
Confidence 455567888889999999999987 5667899999999986544333
No 224
>KOG2340|consensus
Probab=84.26 E-value=1 Score=39.02 Aligned_cols=45 Identities=13% Similarity=0.206 Sum_probs=32.3
Q ss_pred CCCCchHHHhHHHHHHccCCcEEEEeec-CCCc--ccccccchhhhhhc
Q psy11948 22 FKTPTKIQSMVMPSALLARKDIVGAAET-GSGK--TLAFGIPILTGIVN 67 (167)
Q Consensus 22 ~~~pt~iQ~~~ip~~l~~~~d~i~~a~t-gsGK--t~~~~lp~l~~~~~ 67 (167)
-...|+.|.+-+-.+... +|++.-..| +.|+ +..|++.+|.++++
T Consensus 214 s~pltalQ~~L~~~m~~Y-rDl~y~~~s~kn~~e~R~lYclH~lNHi~K 261 (698)
T KOG2340|consen 214 SEPLTALQKELFKIMFNY-RDLLYPTRSQKNGEEYRSLYCLHALNHILK 261 (698)
T ss_pred cCcchHHHHHHHHHHHhh-hhhccccccccccchhhhhHHHHHHHHHHH
Confidence 357889999999888877 898854443 3444 44577888888874
No 225
>PRK10536 hypothetical protein; Provisional
Probab=84.13 E-value=1.2 Score=35.04 Aligned_cols=45 Identities=16% Similarity=0.143 Sum_probs=32.8
Q ss_pred CCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhh
Q psy11948 20 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65 (167)
Q Consensus 20 ~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~ 65 (167)
.++..-+..|...+-.+... .-+++.++.|+|||+...--.+..+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~-~lV~i~G~aGTGKT~La~a~a~~~l 99 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK-QLIFATGEAGCGKTWISAAKAAEAL 99 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC-CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 35566777899988877766 6888999999999986544444333
No 226
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=83.98 E-value=0.3 Score=45.03 Aligned_cols=44 Identities=25% Similarity=0.245 Sum_probs=38.5
Q ss_pred ccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhhhccccccceEEEccc
Q psy11948 82 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 161 (167)
Q Consensus 82 ~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~aLIl~PT 161 (167)
++|.+++++||+|||.+|+.|++..+. ...+++||+||
T Consensus 472 ~~d~Ll~adTGsGKT~val~a~l~al~------------------------------------------~g~qvlvLvPT 509 (926)
T TIGR00580 472 PMDRLVCGDVGFGKTEVAMRAAFKAVL------------------------------------------DGKQVAVLVPT 509 (926)
T ss_pred cCCEEEECCCCccHHHHHHHHHHHHHH------------------------------------------hCCeEEEEeCc
Confidence 479999999999999999999987663 12589999999
Q ss_pred hhhhcC
Q psy11948 162 RELAIQ 167 (167)
Q Consensus 162 RELa~Q 167 (167)
++||.|
T Consensus 510 ~~LA~Q 515 (926)
T TIGR00580 510 TLLAQQ 515 (926)
T ss_pred HHHHHH
Confidence 999988
No 227
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=83.97 E-value=1.3 Score=38.09 Aligned_cols=38 Identities=24% Similarity=0.230 Sum_probs=25.6
Q ss_pred HHHCCCCCCchHHHhHHHHHHccCCc-EEEEeecCCCccccc
Q psy11948 17 LYQKGFKTPTKIQSMVMPSALLARKD-IVGAAETGSGKTLAF 57 (167)
Q Consensus 17 l~~~g~~~pt~iQ~~~ip~~l~~~~d-~i~~a~tgsGKt~~~ 57 (167)
|.+.|| ++-|...+-.++...+. ++++++||||||...
T Consensus 221 l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL 259 (486)
T TIGR02533 221 LETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL 259 (486)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 455565 45566666555554344 679999999999864
No 228
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.59 E-value=0.39 Score=41.30 Aligned_cols=18 Identities=39% Similarity=0.329 Sum_probs=14.2
Q ss_pred EEEeecCCCcccccccch
Q psy11948 44 VGAAETGSGKTLAFGIPI 61 (167)
Q Consensus 44 i~~a~tgsGKt~~~~lp~ 61 (167)
++.++||||||..|+..+
T Consensus 1 LL~g~TGsGKT~v~l~~i 18 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAI 18 (505)
T ss_pred CccCCCCCCHHHHHHHHH
Confidence 357899999999986543
No 229
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=83.43 E-value=0.62 Score=39.36 Aligned_cols=23 Identities=43% Similarity=0.583 Sum_probs=20.3
Q ss_pred cEEEEeecCCCcccccccchhhh
Q psy11948 42 DIVGAAETGSGKTLAFGIPILTG 64 (167)
Q Consensus 42 d~i~~a~tgsGKt~~~~lp~l~~ 64 (167)
++++.++||||||..+.+|.+..
T Consensus 46 h~lvig~tgSGKt~~~viP~ll~ 68 (469)
T PF02534_consen 46 HVLVIGPTGSGKTTSFVIPNLLN 68 (469)
T ss_pred EEEEEeCCCCCccceeeHhHHHh
Confidence 59999999999999999987643
No 230
>KOG0950|consensus
Probab=83.42 E-value=0.68 Score=42.39 Aligned_cols=57 Identities=25% Similarity=0.346 Sum_probs=42.8
Q ss_pred CCHHHHH-HHHHCCCCCCchHHHhHH--HHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 9 IPETIIR-ALYQKGFKTPTKIQSMVM--PSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 9 l~~~l~~-~l~~~g~~~pt~iQ~~~i--p~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
+++.+.. ..+..|+..++..|..|+ |.++.+ .++|...||+.|||++--+=++..++
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~-~nliys~Pts~gktlvaeilml~~~l 266 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLER-KNLIYSLPTSAGKTLVAEILMLREVL 266 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcc-cceEEeCCCccchHHHHHHHHHHHHH
Confidence 3444444 344679999999999998 778855 99999999999999985554444444
No 231
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=83.41 E-value=0.33 Score=42.87 Aligned_cols=55 Identities=27% Similarity=0.326 Sum_probs=43.0
Q ss_pred CCCcccccc----------ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhh
Q psy11948 71 NPTEEDEND----------SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 140 (167)
Q Consensus 71 ~~~~~~~~~----------~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 140 (167)
.+|..|..+ ....+.+++++||+|||.+|++|++..+.
T Consensus 235 ~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~-------------------------------- 282 (630)
T TIGR00643 235 KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE-------------------------------- 282 (630)
T ss_pred CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH--------------------------------
Confidence 467777544 11246799999999999999999987653
Q ss_pred cchhhhhccccccceEEEccchhhhcC
Q psy11948 141 NTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 141 ~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
...+++||+||++||.|
T Consensus 283 ----------~g~qvlilaPT~~LA~Q 299 (630)
T TIGR00643 283 ----------AGYQVALMAPTEILAEQ 299 (630)
T ss_pred ----------cCCcEEEECCHHHHHHH
Confidence 23579999999999987
No 232
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=83.03 E-value=1.6 Score=34.31 Aligned_cols=39 Identities=26% Similarity=0.261 Sum_probs=25.4
Q ss_pred HHHHCCCCCCchHHHhHHHHHHc-cCCcEEEEeecCCCccccc
Q psy11948 16 ALYQKGFKTPTKIQSMVMPSALL-ARKDIVGAAETGSGKTLAF 57 (167)
Q Consensus 16 ~l~~~g~~~pt~iQ~~~ip~~l~-~~~d~i~~a~tgsGKt~~~ 57 (167)
.|.+.|+ ++-|...|-.++. ...-++++++||||||...
T Consensus 58 ~l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l 97 (264)
T cd01129 58 DLEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL 97 (264)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH
Confidence 3556664 4445555655443 3245889999999999854
No 233
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=82.89 E-value=0.34 Score=43.84 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=41.4
Q ss_pred CCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhh
Q psy11948 71 NPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFV 146 (167)
Q Consensus 71 ~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 146 (167)
.|+..|-.+ +.|+ ++.++||+|||++|.+|++...+
T Consensus 78 ~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al-------------------------------------- 117 (790)
T PRK09200 78 RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL-------------------------------------- 117 (790)
T ss_pred CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH--------------------------------------
Confidence 566666444 3333 99999999999999999985443
Q ss_pred hccccccceEEEccchhhhcC
Q psy11948 147 KKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 147 ~~~~~~~~aLIl~PTRELa~Q 167 (167)
.+.+++|++||++||.|
T Consensus 118 ----~G~~v~VvTpt~~LA~q 134 (790)
T PRK09200 118 ----EGKGVHLITVNDYLAKR 134 (790)
T ss_pred ----cCCCeEEEeCCHHHHHH
Confidence 24579999999999987
No 234
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=82.33 E-value=0.4 Score=43.68 Aligned_cols=45 Identities=27% Similarity=0.275 Sum_probs=37.7
Q ss_pred cccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhhhccccccceEEEcc
Q psy11948 81 ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 160 (167)
Q Consensus 81 ~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~aLIl~P 160 (167)
.+.++++.++||+|||..|.+++++... ...+++|+.|
T Consensus 16 ~~~~vIi~a~TGSGKTT~vpl~lL~~~~------------------------------------------~~~~ilvlqP 53 (819)
T TIGR01970 16 AHPQVVLEAPPGAGKSTAVPLALLDAPG------------------------------------------IGGKIIMLEP 53 (819)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHhhc------------------------------------------cCCeEEEEeC
Confidence 4678999999999999999999986541 1247999999
Q ss_pred chhhhcC
Q psy11948 161 TRELAIQ 167 (167)
Q Consensus 161 TRELa~Q 167 (167)
||++|.|
T Consensus 54 rR~aA~q 60 (819)
T TIGR01970 54 RRLAARS 60 (819)
T ss_pred cHHHHHH
Confidence 9999976
No 235
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=82.25 E-value=0.61 Score=38.00 Aligned_cols=16 Identities=50% Similarity=0.611 Sum_probs=14.3
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.++++.+|||||||+-
T Consensus 98 SNILLiGPTGsGKTlL 113 (408)
T COG1219 98 SNILLIGPTGSGKTLL 113 (408)
T ss_pred ccEEEECCCCCcHHHH
Confidence 6899999999999973
No 236
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=82.24 E-value=0.86 Score=40.41 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=21.8
Q ss_pred CCcEEEEeecCCCcccccccchhhh
Q psy11948 40 RKDIVGAAETGSGKTLAFGIPILTG 64 (167)
Q Consensus 40 ~~d~i~~a~tgsGKt~~~~lp~l~~ 64 (167)
..++++.|+||||||..+.+|-+..
T Consensus 175 ~~HvlviapTgSGKgvg~ViPnLL~ 199 (636)
T PRK13880 175 PEHVLTYAPTRSGKGVGLVVPTLLS 199 (636)
T ss_pred CceEEEEecCCCCCceEEEccchhh
Confidence 3579999999999999999987754
No 237
>KOG1133|consensus
Probab=82.16 E-value=1.2 Score=39.56 Aligned_cols=43 Identities=33% Similarity=0.285 Sum_probs=31.5
Q ss_pred CCchHHHhHHHHH---HccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 24 TPTKIQSMVMPSA---LLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 24 ~pt~iQ~~~ip~~---l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
.|+.||...+..+ +..++=-|.-+|||+|||++.+-..+..+-
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~ 60 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLR 60 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHH
Confidence 6888999877654 344366678999999999987765555443
No 238
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=82.00 E-value=1.4 Score=42.05 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=29.1
Q ss_pred CCCCCCchHHH--hHHHHHHccCCcEEEEeecCCCcccccccchh
Q psy11948 20 KGFKTPTKIQS--MVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62 (167)
Q Consensus 20 ~g~~~pt~iQ~--~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l 62 (167)
..|...-||.. ..|...+.++..++++++||||||.- +|.+
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~ 102 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQ--LPKI 102 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHH--HHHH
Confidence 45666677766 45555666657788999999999993 4543
No 239
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=81.69 E-value=2.5 Score=34.83 Aligned_cols=43 Identities=23% Similarity=0.118 Sum_probs=31.3
Q ss_pred CCchHHHhHHHHHH---ccCCcEEEEeecCCCcccccccchhhhhhc
Q psy11948 24 TPTKIQSMVMPSAL---LARKDIVGAAETGSGKTLAFGIPILTGIVN 67 (167)
Q Consensus 24 ~pt~iQ~~~ip~~l---~~~~d~i~~a~tgsGKt~~~~lp~l~~~~~ 67 (167)
.+|+-|+++-..++ ....|.++.|-||+|||.. +.+.+...++
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~ 142 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALN 142 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHh
Confidence 68899987765544 3348999999999999984 3455555554
No 240
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=81.63 E-value=1.9 Score=35.44 Aligned_cols=54 Identities=20% Similarity=0.227 Sum_probs=35.9
Q ss_pred CchHHHhHHHHH------HccCCcEEEEeecCCCcccccccchhhhhhcccCCCCccccccccccceeeeecccC
Q psy11948 25 PTKIQSMVMPSA------LLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSARKDIVGAAETGS 93 (167)
Q Consensus 25 pt~iQ~~~ip~~------l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~~~~~~~~~~~~~~~~~~d~~~~a~tgs 93 (167)
+++=|+.++..+ ..+ ..+.+.++-|+|||+ ++-.+...++ ..+..+++.|+||.
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~-~~~fv~G~~GtGKs~--l~~~i~~~~~------------~~~~~~~~~a~tg~ 61 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEG-LNFFVTGPAGTGKSF--LIKAIIDYLR------------SRGKKVLVTAPTGI 61 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCC-cEEEEEcCCCCChhH--HHHHHHHHhc------------cccceEEEecchHH
Confidence 456688887766 455 789999999999996 3322222221 13456778888873
No 241
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=81.62 E-value=0.9 Score=35.42 Aligned_cols=27 Identities=37% Similarity=0.446 Sum_probs=19.4
Q ss_pred hHHHHHHccCCcEEEEeecCCCccccc
Q psy11948 31 MVMPSALLARKDIVGAAETGSGKTLAF 57 (167)
Q Consensus 31 ~~ip~~l~~~~d~i~~a~tgsGKt~~~ 57 (167)
..+.....++..++++++||||||...
T Consensus 118 ~~l~~~v~~~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 118 EFLRSAVRGRGNILISGPTGSGKTTLL 144 (270)
T ss_dssp HHHHHCHHTTEEEEEEESTTSSHHHHH
T ss_pred HHHhhccccceEEEEECCCccccchHH
Confidence 334333344589999999999999754
No 242
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=81.52 E-value=1 Score=35.60 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=19.8
Q ss_pred HHHHHHccCCcEEEEeecCCCcccc
Q psy11948 32 VMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 32 ~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
.+..++..++.+++++++|+|||..
T Consensus 25 ll~~l~~~~~pvLl~G~~GtGKT~l 49 (272)
T PF12775_consen 25 LLDLLLSNGRPVLLVGPSGTGKTSL 49 (272)
T ss_dssp HHHHHHHCTEEEEEESSTTSSHHHH
T ss_pred HHHHHHHcCCcEEEECCCCCchhHH
Confidence 3345556669999999999999974
No 243
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=81.15 E-value=1.4 Score=37.73 Aligned_cols=31 Identities=29% Similarity=0.281 Sum_probs=22.7
Q ss_pred chHHHhHHHHHHccCCc-EEEEeecCCCcccc
Q psy11948 26 TKIQSMVMPSALLARKD-IVGAAETGSGKTLA 56 (167)
Q Consensus 26 t~iQ~~~ip~~l~~~~d-~i~~a~tgsGKt~~ 56 (167)
++.|...+-.++...+- +++.+|||||||..
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT 274 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT 274 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH
Confidence 56677777666655444 56899999999985
No 244
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=81.06 E-value=0.97 Score=40.32 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=21.6
Q ss_pred CCcEEEEeecCCCcccccccchhhh
Q psy11948 40 RKDIVGAAETGSGKTLAFGIPILTG 64 (167)
Q Consensus 40 ~~d~i~~a~tgsGKt~~~~lp~l~~ 64 (167)
..++++.|+||||||..|.+|-+-.
T Consensus 139 ~~hvlviApTgSGKgvg~VIPnLL~ 163 (670)
T PRK13850 139 QPHSLVVAPTRAGKGVGVVIPTLLT 163 (670)
T ss_pred CceEEEEecCCCCceeeehHhHHhc
Confidence 3589999999999999999987654
No 245
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=81.05 E-value=1.7 Score=38.01 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=24.9
Q ss_pred HHHCCCCCCchHHHhHHHHHHcc-CCcEEEEeecCCCccccc
Q psy11948 17 LYQKGFKTPTKIQSMVMPSALLA-RKDIVGAAETGSGKTLAF 57 (167)
Q Consensus 17 l~~~g~~~pt~iQ~~~ip~~l~~-~~d~i~~a~tgsGKt~~~ 57 (167)
|.+.|| .+-|...|..++.. .--++++++||||||...
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl 333 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL 333 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 556665 34455555554443 235779999999999864
No 246
>KOG1132|consensus
Probab=81.01 E-value=0.81 Score=41.59 Aligned_cols=44 Identities=23% Similarity=0.250 Sum_probs=33.4
Q ss_pred CCchHHHhHHHHHHcc---CCcEEEEeecCCCcccccccchhhhhhc
Q psy11948 24 TPTKIQSMVMPSALLA---RKDIVGAAETGSGKTLAFGIPILTGIVN 67 (167)
Q Consensus 24 ~pt~iQ~~~ip~~l~~---~~d~i~~a~tgsGKt~~~~lp~l~~~~~ 67 (167)
.|++.|...+-.+++. ..+.++-+|||+|||++.+=..+....+
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~ 67 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQH 67 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHH
Confidence 7899999888766542 3678999999999999887655544443
No 247
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=80.58 E-value=3.5 Score=36.50 Aligned_cols=30 Identities=27% Similarity=0.256 Sum_probs=26.4
Q ss_pred chHHHhHHHHHHccCCcEEEEeecCCCcccc
Q psy11948 26 TKIQSMVMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 26 t~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
++.|+.++-..+.. +-+++.+..|+|||..
T Consensus 154 ~d~Qk~Av~~a~~~-~~~vItGgpGTGKTt~ 183 (615)
T PRK10875 154 VDWQKVAAAVALTR-RISVISGGPGTGKTTT 183 (615)
T ss_pred CHHHHHHHHHHhcC-CeEEEEeCCCCCHHHH
Confidence 57999999888877 8899999999999974
No 248
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=79.65 E-value=2.5 Score=33.44 Aligned_cols=43 Identities=23% Similarity=0.359 Sum_probs=30.5
Q ss_pred CCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 20 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 20 ~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
.|+ .|.++|..+.=.+..| + ++.-.||-|||+...+|..-..+
T Consensus 74 ~g~-~p~~vQll~~l~L~~G-~--laEm~TGEGKTli~~l~a~~~AL 116 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALALHKG-R--LAEMKTGEGKTLIAALPAALNAL 116 (266)
T ss_dssp TS-----HHHHHHHHHHHTT-S--EEEESTTSHHHHHHHHHHHHHHT
T ss_pred cCC-cccHHHHhhhhhcccc-e--eEEecCCCCcHHHHHHHHHHHHH
Confidence 455 8999999999666555 3 88999999999998877655544
No 249
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=79.62 E-value=1.1 Score=39.46 Aligned_cols=27 Identities=37% Similarity=0.321 Sum_probs=22.9
Q ss_pred cCCcEEEEeecCCCcccccccchhhhh
Q psy11948 39 ARKDIVGAAETGSGKTLAFGIPILTGI 65 (167)
Q Consensus 39 ~~~d~i~~a~tgsGKt~~~~lp~l~~~ 65 (167)
+...+++.|+||||||..|.+|-+-..
T Consensus 157 g~~hvLviapTgSGKg~g~VIPnLL~~ 183 (606)
T PRK13897 157 GFQHALLFAPTGSGKGVGFVIPNLLFW 183 (606)
T ss_pred CCceEEEEcCCCCCcceEEehhhHHhC
Confidence 445789999999999999999987653
No 250
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=79.41 E-value=1.6 Score=41.64 Aligned_cols=32 Identities=31% Similarity=0.436 Sum_probs=22.8
Q ss_pred HHhHHHHHHccCCcEEEEeecCCCcccccccchh
Q psy11948 29 QSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62 (167)
Q Consensus 29 Q~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l 62 (167)
....|...+.++..+++++.||||||. .+|.+
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~ 109 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTT--QLPKI 109 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHH
Confidence 334555566665778889999999999 46633
No 251
>KOG0926|consensus
Probab=78.48 E-value=2.2 Score=38.92 Aligned_cols=34 Identities=32% Similarity=0.417 Sum_probs=22.5
Q ss_pred CCCCchHHHhHH--H----------HHHccCCcEEEEeecCCCcccc
Q psy11948 22 FKTPTKIQSMVM--P----------SALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 22 ~~~pt~iQ~~~i--p----------~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
+..|..||..-+ | ++..+ -=+|+|+.||||||.-
T Consensus 242 V~R~~EIQ~sR~~LPI~aeEq~IMEaIn~n-~vvIIcGeTGsGKTTQ 287 (1172)
T KOG0926|consen 242 VSRPAEIQESRLDLPIVAEEQRIMEAINEN-PVVIICGETGSGKTTQ 287 (1172)
T ss_pred ecCcHHHHHHHhcCchhHHHHHHHHHhhcC-CeEEEecCCCCCcccc
Confidence 356777887433 2 22323 4478999999999973
No 252
>PRK14701 reverse gyrase; Provisional
Probab=78.12 E-value=0.59 Score=45.66 Aligned_cols=57 Identities=21% Similarity=0.067 Sum_probs=41.0
Q ss_pred ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcch
Q psy11948 68 KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 143 (167)
Q Consensus 68 ~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 143 (167)
++ .|+..|... ..++|+++.+|||+|||+.+..+.+. ..
T Consensus 77 G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~-~~----------------------------------- 119 (1638)
T PRK14701 77 GF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALF-LA----------------------------------- 119 (1638)
T ss_pred CC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHH-HH-----------------------------------
Confidence 44 477777544 67899999999999999833333221 11
Q ss_pred hhhhccccccceEEEccchhhhcC
Q psy11948 144 EFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 144 ~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
....++|||+||||||.|
T Consensus 120 ------~~g~~aLVl~PTreLa~Q 137 (1638)
T PRK14701 120 ------LKGKKCYIILPTTLLVKQ 137 (1638)
T ss_pred ------hcCCeEEEEECHHHHHHH
Confidence 123589999999999987
No 253
>PF12846 AAA_10: AAA-like domain
Probab=77.73 E-value=1.5 Score=34.02 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=19.5
Q ss_pred CcEEEEeecCCCcccccccchhhhhhc
Q psy11948 41 KDIVGAAETGSGKTLAFGIPILTGIVN 67 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~~lp~l~~~~~ 67 (167)
.++++.+.||+|||.... .++.....
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~ 27 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIR 27 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHH
Confidence 578999999999997665 55554443
No 254
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=77.66 E-value=3.1 Score=37.82 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=21.9
Q ss_pred CCchHHHhHHHHH----HccCCcEEEEeecCCCcccc
Q psy11948 24 TPTKIQSMVMPSA----LLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 24 ~pt~iQ~~~ip~~----l~~~~d~i~~a~tgsGKt~~ 56 (167)
.|-.-|..||..+ -.|.+.++++..||+|||..
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrT 201 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRT 201 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCccee
Confidence 4556777777443 34555677778888888764
No 255
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=77.43 E-value=1.9 Score=34.52 Aligned_cols=24 Identities=42% Similarity=0.534 Sum_probs=18.5
Q ss_pred HHHHHccCCcEEEEeecCCCcccc
Q psy11948 33 MPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 33 ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
+...+.++..++++++||||||..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHH
Confidence 333444558999999999999984
No 256
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=77.08 E-value=1.6 Score=38.94 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=23.1
Q ss_pred cCCcEEEEeecCCCcccccccchhhhh
Q psy11948 39 ARKDIVGAAETGSGKTLAFGIPILTGI 65 (167)
Q Consensus 39 ~~~d~i~~a~tgsGKt~~~~lp~l~~~ 65 (167)
+..++++.|+|||||+..+.+|-|-.+
T Consensus 143 g~~hvLviApTrSGKgvg~VIPnLL~~ 169 (663)
T PRK13876 143 GPEHVLCFAPTRSGKGVGLVVPTLLTW 169 (663)
T ss_pred CCceEEEEecCCCCcceeEehhhHHhC
Confidence 446899999999999999999976654
No 257
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=77.06 E-value=0.7 Score=41.55 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=24.2
Q ss_pred CCCcccccc--ccccceeeeecccCccceeeecchh
Q psy11948 71 NPTEEDEND--SARKDIVGAAETGSGKTLAFGIPIL 104 (167)
Q Consensus 71 ~~~~~~~~~--~~~~d~~~~a~tgsgkt~~~~~p~i 104 (167)
.|+..|..+ ......++.++||+|||+++.+|++
T Consensus 56 ~p~~vQlig~~~l~~G~Iaem~TGeGKTLva~lpa~ 91 (745)
T TIGR00963 56 RPFDVQLIGGIALHKGKIAEMKTGEGKTLTATLPAY 91 (745)
T ss_pred CccchHHhhhhhhcCCceeeecCCCccHHHHHHHHH
Confidence 455555333 1223348999999999999999995
No 258
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=76.90 E-value=1.3 Score=29.58 Aligned_cols=16 Identities=38% Similarity=0.385 Sum_probs=14.1
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
..+++.+++|+|||..
T Consensus 3 ~~~~l~G~~G~GKTtl 18 (148)
T smart00382 3 EVILIVGPPGSGKTTL 18 (148)
T ss_pred CEEEEECCCCCcHHHH
Confidence 6789999999999974
No 259
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=76.66 E-value=2.1 Score=32.52 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=18.3
Q ss_pred HhHHHHHHccCCcEEEEeecCCCcccc
Q psy11948 30 SMVMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 30 ~~~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
+.++-....|++++++.++.|+|||+.
T Consensus 12 KrAL~iAAaG~h~lLl~GppGtGKTml 38 (206)
T PF01078_consen 12 KRALEIAAAGGHHLLLIGPPGTGKTML 38 (206)
T ss_dssp HHHHHHHHHCC--EEEES-CCCTHHHH
T ss_pred HHHHHHHHcCCCCeEEECCCCCCHHHH
Confidence 345545556779999999999999975
No 260
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=76.18 E-value=0.66 Score=42.46 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=20.9
Q ss_pred eeeecccCccceeeecchhhhhhh
Q psy11948 86 VGAAETGSGKTLAFGIPILTGIVN 109 (167)
Q Consensus 86 ~~~a~tgsgkt~~~~~p~i~~~~~ 109 (167)
++.++||+|||++|.+|++...+.
T Consensus 99 Iaem~TGeGKTL~a~Lpa~~~al~ 122 (896)
T PRK13104 99 IAEMRTGEGKTLVATLPAYLNAIS 122 (896)
T ss_pred cccccCCCCchHHHHHHHHHHHhc
Confidence 679999999999999999976653
No 261
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=76.18 E-value=0.89 Score=32.51 Aligned_cols=21 Identities=33% Similarity=0.366 Sum_probs=17.7
Q ss_pred cccceeeeecccCccceeeec
Q psy11948 81 ARKDIVGAAETGSGKTLAFGI 101 (167)
Q Consensus 81 ~~~d~~~~a~tgsgkt~~~~~ 101 (167)
..+..++.++||+|||...+.
T Consensus 24 ~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 24 EERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp GCSEEEEEESTTSSHHHHHHH
T ss_pred CCCCEEEEECCCCCcChhhhh
Confidence 357889999999999988774
No 262
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=76.10 E-value=2.3 Score=36.29 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=21.1
Q ss_pred hHHHHHHccCCcEEEEeecCCCcccc
Q psy11948 31 MVMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 31 ~~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
.++-..-.|++++++.++.|||||+.
T Consensus 189 rAleiAAAGgHnLl~~GpPGtGKTml 214 (490)
T COG0606 189 RALEIAAAGGHNLLLVGPPGTGKTML 214 (490)
T ss_pred HHHHHHHhcCCcEEEecCCCCchHHh
Confidence 44545556779999999999999986
No 263
>PRK05973 replicative DNA helicase; Provisional
Probab=75.60 E-value=2.3 Score=33.02 Aligned_cols=49 Identities=22% Similarity=0.324 Sum_probs=31.3
Q ss_pred cCCCCHHHHHHHHHCCCC----------CCchHHHhHHHHHHccCCcEEEEeecCCCcccc
Q psy11948 6 KFNIPETIIRALYQKGFK----------TPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 6 ~l~l~~~l~~~l~~~g~~----------~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
+.+||+.+-+.-.+-||. .+||... .+.-+..| .-+++.+++|+|||..
T Consensus 22 ~~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~~-l~GGl~~G-sl~LIaG~PG~GKT~l 80 (237)
T PRK05973 22 NIPLHEALDRIAAEEGFSSWSLLAAKAAATTPAEE-LFSQLKPG-DLVLLGARPGHGKTLL 80 (237)
T ss_pred CCcHHHHHHHHHHHhccchHHHHHHhccCCCCHHH-hcCCCCCC-CEEEEEeCCCCCHHHH
Confidence 355666666655566664 5566443 23333344 6788999999999973
No 264
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=75.45 E-value=0.82 Score=41.26 Aligned_cols=55 Identities=20% Similarity=0.267 Sum_probs=39.8
Q ss_pred CCCcccccc--ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhhhc
Q psy11948 71 NPTEEDEND--SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKK 148 (167)
Q Consensus 71 ~~~~~~~~~--~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 148 (167)
.|...|..+ ......++.++||+|||++|.+|++...+
T Consensus 70 rpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL---------------------------------------- 109 (762)
T TIGR03714 70 FPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNAL---------------------------------------- 109 (762)
T ss_pred CccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhh----------------------------------------
Confidence 455555433 22333699999999999999999865443
Q ss_pred cccccceEEEccchhhhcC
Q psy11948 149 TRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 149 ~~~~~~aLIl~PTRELa~Q 167 (167)
....++|++||++||.|
T Consensus 110 --~g~~V~VVTpn~yLA~R 126 (762)
T TIGR03714 110 --TGKGAMLVTTNDYLAKR 126 (762)
T ss_pred --cCCceEEeCCCHHHHHH
Confidence 12358999999999976
No 265
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=74.63 E-value=2 Score=38.08 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=22.1
Q ss_pred cCCcEEEEeecCCCcccccccchhhh
Q psy11948 39 ARKDIVGAAETGSGKTLAFGIPILTG 64 (167)
Q Consensus 39 ~~~d~i~~a~tgsGKt~~~~lp~l~~ 64 (167)
|..++++.|+||+|||..+.+|-+-.
T Consensus 210 g~~H~lv~ApTgsGKgvg~VIPnLL~ 235 (623)
T TIGR02767 210 GSTHMIFFAGSGGFKTTSVVVPTALK 235 (623)
T ss_pred CCceEEEEeCCCCCccceeehhhhhc
Confidence 34689999999999999999997543
No 266
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=74.06 E-value=1.5 Score=32.70 Aligned_cols=15 Identities=33% Similarity=0.581 Sum_probs=13.0
Q ss_pred EEEEeecCCCccccc
Q psy11948 43 IVGAAETGSGKTLAF 57 (167)
Q Consensus 43 ~i~~a~tgsGKt~~~ 57 (167)
++++++||||||...
T Consensus 4 ilI~GptGSGKTTll 18 (198)
T cd01131 4 VLVTGPTGSGKSTTL 18 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999854
No 267
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=73.28 E-value=2.3 Score=37.85 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=34.2
Q ss_pred cCCcEEEEeecCCCcccccccchhhhhhc--ccCCCCccc------cccccccceeeeecccCc
Q psy11948 39 ARKDIVGAAETGSGKTLAFGIPILTGIVN--KLENPTEED------ENDSARKDIVGAAETGSG 94 (167)
Q Consensus 39 ~~~d~i~~a~tgsGKt~~~~lp~l~~~~~--~~~~~~~~~------~~~~~~~d~~~~a~tgsg 94 (167)
|..++++.|+||+|||..+.+|-+-..-. -...|.-.. -....|+++.+-+|++..
T Consensus 223 g~~H~Lv~ApTgsGKt~g~VIPnLL~~~gS~VV~DpKgEl~~~Ta~~R~~~G~~V~vfdP~~~~ 286 (641)
T PRK13822 223 GSTHGLVFAGSGGFKTTSVVVPTALKWGGPLVVLDPSTEVAPMVSEHRRDAGREVIVLDPTNPG 286 (641)
T ss_pred CCceEEEEeCCCCCccceEehhhhhcCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 34689999999999999999997643221 000111000 001346778888887754
No 268
>PRK09183 transposase/IS protein; Provisional
Probab=73.18 E-value=3.3 Score=32.43 Aligned_cols=18 Identities=33% Similarity=0.394 Sum_probs=15.1
Q ss_pred cCCcEEEEeecCCCcccc
Q psy11948 39 ARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 39 ~~~d~i~~a~tgsGKt~~ 56 (167)
.+.++++.+++|+|||..
T Consensus 101 ~~~~v~l~Gp~GtGKThL 118 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHL 118 (259)
T ss_pred cCCeEEEEeCCCCCHHHH
Confidence 337899999999999953
No 269
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=73.00 E-value=2.9 Score=32.62 Aligned_cols=21 Identities=19% Similarity=0.082 Sum_probs=17.3
Q ss_pred HHHccCCcEEEEeecCCCcccc
Q psy11948 35 SALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 35 ~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
.+..| .++++.+++|+|||..
T Consensus 17 ~l~~g-~~vLL~G~~GtGKT~l 37 (262)
T TIGR02640 17 YLKSG-YPVHLRGPAGTGKTTL 37 (262)
T ss_pred HHhcC-CeEEEEcCCCCCHHHH
Confidence 34455 8999999999999975
No 270
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=71.80 E-value=3.4 Score=36.86 Aligned_cols=32 Identities=22% Similarity=0.092 Sum_probs=24.3
Q ss_pred CCchHHHhHHHHHHccCCcEEEEeecCCCcccccc
Q psy11948 24 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 58 (167)
Q Consensus 24 ~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~ 58 (167)
.+++-|.+++-. ....+++.|..|||||.+..
T Consensus 2 ~Ln~~Q~~av~~---~~g~~lV~AgpGSGKT~vL~ 33 (672)
T PRK10919 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVIT 33 (672)
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCCHHHHHH
Confidence 478889998743 22578899999999998643
No 271
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=71.55 E-value=2.2 Score=38.31 Aligned_cols=53 Identities=13% Similarity=0.175 Sum_probs=33.8
Q ss_pred HHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhh
Q psy11948 11 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65 (167)
Q Consensus 11 ~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~ 65 (167)
+++.+.+++.|-..+..|-..-||.-... +++++.+.||+|||.++ ..++..+
T Consensus 157 ~~l~k~lk~~~~~s~i~I~gvPip~~~E~-~H~li~GttGSGKS~~i-~~LL~~i 209 (732)
T PRK13700 157 KDVARMLKKDGKDSDIRIGDLPIIRDSEI-QNFCLHGTVGAGKSEVI-RRLANYA 209 (732)
T ss_pred HHHHHHHHhcCCCCCeeEccccCCcchhh-cceEEeCCCCCCHHHHH-HHHHHHH
Confidence 56667777766544444433333444455 89999999999999843 3444444
No 272
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=71.54 E-value=2.1 Score=28.67 Aligned_cols=13 Identities=38% Similarity=0.580 Sum_probs=11.6
Q ss_pred EEEEeecCCCccc
Q psy11948 43 IVGAAETGSGKTL 55 (167)
Q Consensus 43 ~i~~a~tgsGKt~ 55 (167)
+++.+++|||||.
T Consensus 2 I~I~G~~gsGKST 14 (121)
T PF13207_consen 2 IIISGPPGSGKST 14 (121)
T ss_dssp EEEEESTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 5789999999996
No 273
>PRK06526 transposase; Provisional
Probab=71.50 E-value=4.4 Score=31.70 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=15.9
Q ss_pred ccCCcEEEEeecCCCcccc
Q psy11948 38 LARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 38 ~~~~d~i~~a~tgsGKt~~ 56 (167)
.++.++++.+++|+|||..
T Consensus 96 ~~~~nlll~Gp~GtGKThL 114 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHL 114 (254)
T ss_pred hcCceEEEEeCCCCchHHH
Confidence 3447999999999999964
No 274
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=70.93 E-value=4 Score=37.62 Aligned_cols=40 Identities=23% Similarity=0.265 Sum_probs=27.1
Q ss_pred CCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhh
Q psy11948 21 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTG 64 (167)
Q Consensus 21 g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~ 64 (167)
|. .|+++|-..==++. .--|+...||.|||++..+|..-.
T Consensus 83 G~-r~ydVQliGgl~Lh---~G~IAEM~TGEGKTL~atlpayln 122 (939)
T PRK12902 83 GM-RHFDVQLIGGMVLH---EGQIAEMKTGEGKTLVATLPSYLN 122 (939)
T ss_pred CC-CcchhHHHhhhhhc---CCceeeecCCCChhHHHHHHHHHH
Confidence 44 67778876553333 335678888888888888776543
No 275
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=70.77 E-value=2.2 Score=29.40 Aligned_cols=14 Identities=36% Similarity=0.498 Sum_probs=12.2
Q ss_pred EEEEeecCCCcccc
Q psy11948 43 IVGAAETGSGKTLA 56 (167)
Q Consensus 43 ~i~~a~tgsGKt~~ 56 (167)
++++++.|||||..
T Consensus 2 ii~~G~pgsGKSt~ 15 (143)
T PF13671_consen 2 IILCGPPGSGKSTL 15 (143)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999973
No 276
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=70.64 E-value=2.8 Score=32.58 Aligned_cols=15 Identities=40% Similarity=0.454 Sum_probs=5.9
Q ss_pred CcEEEEeecCCCccc
Q psy11948 41 KDIVGAAETGSGKTL 55 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~ 55 (167)
+..+++-..|.|||.
T Consensus 26 ~g~lL~de~GlGKT~ 40 (299)
T PF00176_consen 26 RGGLLADEMGLGKTI 40 (299)
T ss_dssp -EEEE---TTSSHHH
T ss_pred CCEEEEECCCCCchh
Confidence 345555555555554
No 277
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=70.59 E-value=4.1 Score=30.07 Aligned_cols=27 Identities=37% Similarity=0.455 Sum_probs=19.8
Q ss_pred hHHHHHHccCCc--EEEEeecCCCcccccc
Q psy11948 31 MVMPSALLARKD--IVGAAETGSGKTLAFG 58 (167)
Q Consensus 31 ~~ip~~l~~~~d--~i~~a~tgsGKt~~~~ 58 (167)
.++..++.| .| ++..+.||+|||.+..
T Consensus 14 ~~v~~~~~G-~n~~i~~yG~tGsGKT~Tm~ 42 (186)
T cd01363 14 PLLQSALDG-YNVCIFAYGQTGSGKTYTME 42 (186)
T ss_pred HHHHHHhCC-cceeEEEECCCCCcceEecC
Confidence 445566777 44 6678899999998765
No 278
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=70.47 E-value=5.3 Score=37.22 Aligned_cols=12 Identities=42% Similarity=0.540 Sum_probs=7.9
Q ss_pred ceEEEccchhhhc
Q psy11948 154 YALILAPTRELAI 166 (167)
Q Consensus 154 ~aLIl~PTRELa~ 166 (167)
++|||||+ .|+.
T Consensus 201 rvLIVvP~-sL~~ 212 (956)
T PRK04914 201 RVLILVPE-TLQH 212 (956)
T ss_pred cEEEEcCH-HHHH
Confidence 57888886 4443
No 279
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=70.43 E-value=3.7 Score=36.52 Aligned_cols=33 Identities=27% Similarity=0.278 Sum_probs=25.8
Q ss_pred CCchHHHhHHHHHHcc----CCcEEEEeecCCCcccc
Q psy11948 24 TPTKIQSMVMPSALLA----RKDIVGAAETGSGKTLA 56 (167)
Q Consensus 24 ~pt~iQ~~~ip~~l~~----~~d~i~~a~tgsGKt~~ 56 (167)
.|++.|..+|..+..+ ....++.+.+|+||++.
T Consensus 12 ~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~l 48 (652)
T PRK05298 12 KPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFT 48 (652)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHH
Confidence 8999999999887543 12566888899999874
No 280
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=70.39 E-value=2.3 Score=28.49 Aligned_cols=14 Identities=43% Similarity=0.340 Sum_probs=11.9
Q ss_pred EEEEeecCCCcccc
Q psy11948 43 IVGAAETGSGKTLA 56 (167)
Q Consensus 43 ~i~~a~tgsGKt~~ 56 (167)
|++.+.+|||||..
T Consensus 1 I~i~G~~GsGKtTi 14 (129)
T PF13238_consen 1 IGISGIPGSGKTTI 14 (129)
T ss_dssp EEEEESTTSSHHHH
T ss_pred CEEECCCCCCHHHH
Confidence 57899999999973
No 281
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=69.86 E-value=4.8 Score=27.01 Aligned_cols=16 Identities=31% Similarity=0.453 Sum_probs=14.3
Q ss_pred CCcEEEEeecCCCccc
Q psy11948 40 RKDIVGAAETGSGKTL 55 (167)
Q Consensus 40 ~~d~i~~a~tgsGKt~ 55 (167)
+..+++.+++|+|||.
T Consensus 19 ~~~v~i~G~~G~GKT~ 34 (151)
T cd00009 19 PKNLLLYGPPGTGKTT 34 (151)
T ss_pred CCeEEEECCCCCCHHH
Confidence 3789999999999995
No 282
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=69.49 E-value=4.9 Score=30.98 Aligned_cols=35 Identities=29% Similarity=0.231 Sum_probs=24.9
Q ss_pred CCCCchHHHhHHHHHH----ccCCcEEEEeecCCCcccc
Q psy11948 22 FKTPTKIQSMVMPSAL----LARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 22 ~~~pt~iQ~~~ip~~l----~~~~d~i~~a~tgsGKt~~ 56 (167)
|-.+++.+..++-.+. .+..-+++.++.|+|||..
T Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl 59 (269)
T TIGR03015 21 FFYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTL 59 (269)
T ss_pred HhCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 4467777777776543 2323588999999999974
No 283
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=68.64 E-value=2.6 Score=28.56 Aligned_cols=16 Identities=38% Similarity=0.426 Sum_probs=11.7
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
+-+++.+++|+|||..
T Consensus 5 ~~~~i~G~~G~GKT~~ 20 (131)
T PF13401_consen 5 RILVISGPPGSGKTTL 20 (131)
T ss_dssp --EEEEE-TTSSHHHH
T ss_pred cccEEEcCCCCCHHHH
Confidence 6788999999999974
No 284
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=68.18 E-value=4 Score=39.07 Aligned_cols=39 Identities=28% Similarity=0.236 Sum_probs=29.6
Q ss_pred CchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 25 PTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 25 pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
.|+-|.++|- -.+ .++++.|.-|||||....-=++..+.
T Consensus 2 ~t~~Q~~ai~--~~~-~~~lv~A~AGsGKT~~lv~r~~~~~~ 40 (1232)
T TIGR02785 2 WTDEQWQAIY--TRG-QNILVSASAGSGKTAVLVERIIKKIL 40 (1232)
T ss_pred CCHHHHHHHh--CCC-CCEEEEecCCCcHHHHHHHHHHHHHh
Confidence 5888999885 234 89999999999999876554544443
No 285
>PRK10689 transcription-repair coupling factor; Provisional
Probab=68.01 E-value=1.6 Score=41.38 Aligned_cols=44 Identities=27% Similarity=0.234 Sum_probs=37.0
Q ss_pred ccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhhhccccccceEEEccc
Q psy11948 82 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 161 (167)
Q Consensus 82 ~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~aLIl~PT 161 (167)
++|.+++++||+|||.+++.+++..+. ...+++||+||
T Consensus 621 ~~d~Ll~a~TGsGKT~val~aa~~~~~------------------------------------------~g~qvlvLvPT 658 (1147)
T PRK10689 621 AMDRLVCGDVGFGKTEVAMRAAFLAVE------------------------------------------NHKQVAVLVPT 658 (1147)
T ss_pred CCCEEEEcCCCcCHHHHHHHHHHHHHH------------------------------------------cCCeEEEEeCc
Confidence 489999999999999998887765432 24689999999
Q ss_pred hhhhcC
Q psy11948 162 RELAIQ 167 (167)
Q Consensus 162 RELa~Q 167 (167)
|+||.|
T Consensus 659 ~eLA~Q 664 (1147)
T PRK10689 659 TLLAQQ 664 (1147)
T ss_pred HHHHHH
Confidence 999987
No 286
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=67.83 E-value=5.7 Score=38.99 Aligned_cols=33 Identities=24% Similarity=0.082 Sum_probs=28.0
Q ss_pred CCchHHHhHHHHHHcc-CCcEEEEeecCCCcccc
Q psy11948 24 TPTKIQSMVMPSALLA-RKDIVGAAETGSGKTLA 56 (167)
Q Consensus 24 ~pt~iQ~~~ip~~l~~-~~d~i~~a~tgsGKt~~ 56 (167)
.+++-|..++-.++.. .+-+++++.-|+|||..
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~ 868 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQ 868 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHH
Confidence 6899999999888853 36788999999999974
No 287
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=67.81 E-value=2.6 Score=31.57 Aligned_cols=15 Identities=40% Similarity=0.370 Sum_probs=12.9
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
-+++.++||+|||.+
T Consensus 3 vi~lvGptGvGKTTt 17 (196)
T PF00448_consen 3 VIALVGPTGVGKTTT 17 (196)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCchHhH
Confidence 367899999999986
No 288
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=67.55 E-value=2.8 Score=34.81 Aligned_cols=32 Identities=31% Similarity=0.267 Sum_probs=20.4
Q ss_pred HHHHccCCcEEEEeecCCCcccccccchhhhhhc
Q psy11948 34 PSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67 (167)
Q Consensus 34 p~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~~ 67 (167)
|.-... +++++.+.||||||. ++.+++..+..
T Consensus 10 ~~~~e~-~~~li~G~~GsGKT~-~i~~ll~~~~~ 41 (386)
T PF10412_consen 10 PKDSEN-RHILIIGATGSGKTQ-AIRHLLDQIRA 41 (386)
T ss_dssp -GGGGG-G-EEEEE-TTSSHHH-HHHHHHHHHHH
T ss_pred ccchhh-CcEEEECCCCCCHHH-HHHHHHHHHHH
Confidence 333444 789999999999997 44566666543
No 289
>KOG0745|consensus
Probab=67.51 E-value=2.7 Score=35.72 Aligned_cols=16 Identities=44% Similarity=0.584 Sum_probs=14.5
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.++++.+|||||||+.
T Consensus 227 SNvLllGPtGsGKTll 242 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLL 242 (564)
T ss_pred ccEEEECCCCCchhHH
Confidence 6899999999999974
No 290
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=67.37 E-value=2.4 Score=34.60 Aligned_cols=17 Identities=35% Similarity=0.431 Sum_probs=14.7
Q ss_pred CcEEEEeecCCCccccc
Q psy11948 41 KDIVGAAETGSGKTLAF 57 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~ 57 (167)
.-++++++||||||...
T Consensus 123 g~ili~G~tGSGKTT~l 139 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTL 139 (343)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 57899999999999854
No 291
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=66.97 E-value=6.6 Score=39.44 Aligned_cols=35 Identities=17% Similarity=0.124 Sum_probs=28.3
Q ss_pred CCCchHHHhHHHHHHcc-CCcEEEEeecCCCccccc
Q psy11948 23 KTPTKIQSMVMPSALLA-RKDIVGAAETGSGKTLAF 57 (167)
Q Consensus 23 ~~pt~iQ~~~ip~~l~~-~~d~i~~a~tgsGKt~~~ 57 (167)
..+|+.|+.++-.++.+ .+-+++.+.-|+|||...
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l 1053 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTML 1053 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhH
Confidence 36899999999988765 245678899999999754
No 292
>KOG0354|consensus
Probab=66.06 E-value=2.5 Score=38.03 Aligned_cols=47 Identities=36% Similarity=0.346 Sum_probs=38.9
Q ss_pred cccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhhhccccccceEEEcc
Q psy11948 81 ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 160 (167)
Q Consensus 81 ~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~aLIl~P 160 (167)
.++++++++|||+|||.....-+.+.+- ....-++++++|
T Consensus 75 LgkNtii~lPTG~GKTfIAa~Vm~nh~r----------------------------------------w~p~~KiVF~aP 114 (746)
T KOG0354|consen 75 LGKNTIIALPTGSGKTFIAAVIMKNHFE----------------------------------------WRPKGKVVFLAP 114 (746)
T ss_pred hcCCeEEEeecCCCccchHHHHHHHHHh----------------------------------------cCCcceEEEeeC
Confidence 3999999999999999888887776663 223368999999
Q ss_pred chhhhcC
Q psy11948 161 TRELAIQ 167 (167)
Q Consensus 161 TRELa~Q 167 (167)
||-|+.|
T Consensus 115 ~~pLv~Q 121 (746)
T KOG0354|consen 115 TRPLVNQ 121 (746)
T ss_pred CchHHHH
Confidence 9999887
No 293
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=65.80 E-value=7.8 Score=34.34 Aligned_cols=32 Identities=22% Similarity=0.091 Sum_probs=24.2
Q ss_pred CchHHHhHHHHHHccCCcEEEEeecCCCccccccc
Q psy11948 25 PTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 59 (167)
Q Consensus 25 pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~l 59 (167)
+++-|.+++-. ...++++.|..|||||....-
T Consensus 2 Ln~~Q~~av~~---~~~~~~V~Ag~GSGKT~~L~~ 33 (664)
T TIGR01074 2 LNPQQQEAVEY---VTGPCLVLAGAGSGKTRVITN 33 (664)
T ss_pred CCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHH
Confidence 67889887742 236899999999999985443
No 294
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=65.62 E-value=3.3 Score=28.56 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=13.0
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
+|++.+++|+|||..
T Consensus 1 ~vlL~G~~G~GKt~l 15 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTL 15 (139)
T ss_dssp EEEEEESSSSSHHHH
T ss_pred CEEEECCCCCCHHHH
Confidence 478999999999973
No 295
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=65.52 E-value=3.6 Score=33.86 Aligned_cols=22 Identities=41% Similarity=0.456 Sum_probs=18.9
Q ss_pred eeeeecccCccceeeecchhhh
Q psy11948 85 IVGAAETGSGKTLAFGIPILTG 106 (167)
Q Consensus 85 ~~~~a~tgsgkt~~~~~p~i~~ 106 (167)
+++.++||+|||..+.+|-+-.
T Consensus 2 ~lv~g~tGsGKt~~~viP~ll~ 23 (384)
T cd01126 2 VLVFAPTRSGKGVGFVIPNLLT 23 (384)
T ss_pred eeEecCCCCCCccEEEccchhc
Confidence 5678999999999999988754
No 296
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=65.33 E-value=4.8 Score=29.60 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=16.4
Q ss_pred HCCCCCCchHHHhHHHHH-----HccCCcEEEEeecCCCcccc
Q psy11948 19 QKGFKTPTKIQSMVMPSA-----LLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 19 ~~g~~~pt~iQ~~~ip~~-----l~~~~d~i~~a~tgsGKt~~ 56 (167)
...|.....++...+..+ +..+.++++.+++|+|||..
T Consensus 21 ~~d~~~~~~~~~~~~~~l~~~~~~~~~~~l~l~G~~G~GKThL 63 (178)
T PF01695_consen 21 NFDFSNERGIDKAQIAQLAALEFIENGENLILYGPPGTGKTHL 63 (178)
T ss_dssp -------------HHHHHHHH-S-SC--EEEEEESTTSSHHHH
T ss_pred cccccchhhHHHHHHHHHhcCCCcccCeEEEEEhhHhHHHHHH
Confidence 334444444444444332 33447899999999999974
No 297
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=64.94 E-value=4 Score=34.08 Aligned_cols=54 Identities=24% Similarity=0.326 Sum_probs=30.4
Q ss_pred HHHHHHHHH-CCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 11 ETIIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 11 ~~l~~~l~~-~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
.++.+.+++ .+-..+-.+-...+|.-... +++++.+.||+|||.. +..++..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~i~g~tGsGKt~~-i~~l~~~~~ 67 (410)
T cd01127 13 RKLARKLRKKDGKASPITIAGLPFPKDAEE-AHTMIIGTTGTGKTTQ-IRELLASIR 67 (410)
T ss_pred HHHHHHHHHhcCCCCCeeECCEeCCcchhh-ccEEEEcCCCCCHHHH-HHHHHHHHH
Confidence 456666664 11222222222335544445 7999999999999974 334444433
No 298
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=64.67 E-value=3.9 Score=33.10 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=18.5
Q ss_pred ccccceeeeecccCccceeeecchhh
Q psy11948 80 SARKDIVGAAETGSGKTLAFGIPILT 105 (167)
Q Consensus 80 ~~~~d~~~~a~tgsgkt~~~~~p~i~ 105 (167)
..++.+++..+||+||| +++-.++.
T Consensus 146 ~~~~~ilI~G~tGSGKT-Tll~aL~~ 170 (319)
T PRK13894 146 RAHRNILVIGGTGSGKT-TLVNAIIN 170 (319)
T ss_pred HcCCeEEEECCCCCCHH-HHHHHHHH
Confidence 46688999999999999 44444443
No 299
>PRK08181 transposase; Validated
Probab=64.66 E-value=6.3 Score=31.15 Aligned_cols=30 Identities=23% Similarity=0.312 Sum_probs=20.7
Q ss_pred chHHHhHHHH---HHccCCcEEEEeecCCCccc
Q psy11948 26 TKIQSMVMPS---ALLARKDIVGAAETGSGKTL 55 (167)
Q Consensus 26 t~iQ~~~ip~---~l~~~~d~i~~a~tgsGKt~ 55 (167)
...|..++-. ....+.++++.+++|+|||.
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTH 121 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSH 121 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHH
Confidence 3455555522 23344889999999999995
No 300
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=64.63 E-value=6.4 Score=31.70 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=17.7
Q ss_pred HHHHHccCC-cEEEEeecCCCccccc
Q psy11948 33 MPSALLARK-DIVGAAETGSGKTLAF 57 (167)
Q Consensus 33 ip~~l~~~~-d~i~~a~tgsGKt~~~ 57 (167)
++.++.|.. .++..+.||||||.++
T Consensus 69 v~~~~~G~n~~i~ayG~tgSGKT~Tm 94 (325)
T cd01369 69 VDDVLNGYNGTIFAYGQTGSGKTYTM 94 (325)
T ss_pred HHHHHcCccceEEEeCCCCCCceEEe
Confidence 344566622 4678899999999985
No 301
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=64.39 E-value=7.8 Score=38.46 Aligned_cols=33 Identities=24% Similarity=0.075 Sum_probs=28.2
Q ss_pred CCchHHHhHHHHHHcc-CCcEEEEeecCCCcccc
Q psy11948 24 TPTKIQSMVMPSALLA-RKDIVGAAETGSGKTLA 56 (167)
Q Consensus 24 ~pt~iQ~~~ip~~l~~-~~d~i~~a~tgsGKt~~ 56 (167)
.+++-|..++..++.+ .+-+++++..|+|||..
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~ 1000 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ 1000 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH
Confidence 6899999999988874 35788999999999964
No 302
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=64.19 E-value=17 Score=32.62 Aligned_cols=55 Identities=18% Similarity=0.184 Sum_probs=34.2
Q ss_pred ccccCCC-CHHHHHHHHHCCCCCCch----HHHhHHHHHHcc--CCcEEEEeecCCCccccc
Q psy11948 3 EWVKFNI-PETIIRALYQKGFKTPTK----IQSMVMPSALLA--RKDIVGAAETGSGKTLAF 57 (167)
Q Consensus 3 ~f~~l~l-~~~l~~~l~~~g~~~pt~----iQ~~~ip~~l~~--~~d~i~~a~tgsGKt~~~ 57 (167)
-|..+++ +++.++..+......+-| +-..|+..++.. .+.+|+++.+|+|||.+-
T Consensus 42 P~k~l~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 42 PYQILPIYTADEIKLYKNKSIGELPPHIFAISDNAYTNMQREKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred CCccCCCCCHHHHHHHhcCCccccCCCHHHHHHHHHHHHHHcCCCceEEEEcCCCCCeehHH
Confidence 3555663 566666655443333323 445556555543 357999999999999874
No 303
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=64.14 E-value=3.9 Score=34.51 Aligned_cols=23 Identities=43% Similarity=0.579 Sum_probs=20.1
Q ss_pred cceeeeecccCccceeeecchhh
Q psy11948 83 KDIVGAAETGSGKTLAFGIPILT 105 (167)
Q Consensus 83 ~d~~~~a~tgsgkt~~~~~p~i~ 105 (167)
..+++.++||+|||..|.+|.+-
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll 67 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLL 67 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHH
Confidence 45889999999999999999763
No 304
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=64.10 E-value=2.1 Score=30.45 Aligned_cols=26 Identities=50% Similarity=0.666 Sum_probs=22.5
Q ss_pred cceeeeecccCccceeeecchhhhhh
Q psy11948 83 KDIVGAAETGSGKTLAFGIPILTGIV 108 (167)
Q Consensus 83 ~d~~~~a~tgsgkt~~~~~p~i~~~~ 108 (167)
+..++.+++|+|||.++..++...+.
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~ 50 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALK 50 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhc
Confidence 78899999999999988888877664
No 305
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=64.05 E-value=3.3 Score=27.85 Aligned_cols=14 Identities=36% Similarity=0.444 Sum_probs=12.0
Q ss_pred EEEEeecCCCcccc
Q psy11948 43 IVGAAETGSGKTLA 56 (167)
Q Consensus 43 ~i~~a~tgsGKt~~ 56 (167)
+++.++.|+|||..
T Consensus 1 ill~G~~G~GKT~l 14 (132)
T PF00004_consen 1 ILLHGPPGTGKTTL 14 (132)
T ss_dssp EEEESSTTSSHHHH
T ss_pred CEEECcCCCCeeHH
Confidence 57899999999973
No 306
>KOG0733|consensus
Probab=63.90 E-value=3.1 Score=36.83 Aligned_cols=49 Identities=16% Similarity=0.237 Sum_probs=32.6
Q ss_pred ccccCC-CCHHHHHHHHHC-CCCCCchHHHhHHHHHHccCCcEEEEeecCCCccc
Q psy11948 3 EWVKFN-IPETIIRALYQK-GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTL 55 (167)
Q Consensus 3 ~f~~l~-l~~~l~~~l~~~-g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~ 55 (167)
+|+++| ++..+....... -+.+|-..+...+- -.+-+++++|.|+|||+
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~----PprGvLlHGPPGCGKT~ 238 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVR----PPRGVLLHGPPGCGKTS 238 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCC----CCCceeeeCCCCccHHH
Confidence 577777 554444433321 26777777776551 13789999999999997
No 307
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=63.30 E-value=6.5 Score=32.10 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=17.6
Q ss_pred HHHHccC-CcEEEEeecCCCcccccc
Q psy11948 34 PSALLAR-KDIVGAAETGSGKTLAFG 58 (167)
Q Consensus 34 p~~l~~~-~d~i~~a~tgsGKt~~~~ 58 (167)
..++.|. ..+++-+.||||||.+..
T Consensus 82 ~~~l~G~n~ti~aYGqtGSGKTyTm~ 107 (345)
T cd01368 82 QDLLKGKNSLLFTYGVTNSGKTYTMQ 107 (345)
T ss_pred HHHhCCCceEEEEeCCCCCCCeEEec
Confidence 3345562 246678999999999864
No 308
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=62.97 E-value=7.3 Score=31.88 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=17.7
Q ss_pred HHHHccCC--cEEEEeecCCCcccccc
Q psy11948 34 PSALLARK--DIVGAAETGSGKTLAFG 58 (167)
Q Consensus 34 p~~l~~~~--d~i~~a~tgsGKt~~~~ 58 (167)
..++.| . .|+..+.||||||.+..
T Consensus 82 ~~~l~G-~n~~i~ayGqtGSGKT~Tm~ 107 (356)
T cd01365 82 DHAFEG-YNVCLFAYGQTGSGKSYTMM 107 (356)
T ss_pred HHHhCC-CceEEEEecCCCCCCeEEec
Confidence 344566 4 46778899999999875
No 309
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=62.92 E-value=16 Score=32.97 Aligned_cols=55 Identities=22% Similarity=0.277 Sum_probs=35.2
Q ss_pred cccCCC-CHHHHHHHHHCCCCCCc----hHHHhHHHHHHcc--CCcEEEEeecCCCcccccc
Q psy11948 4 WVKFNI-PETIIRALYQKGFKTPT----KIQSMVMPSALLA--RKDIVGAAETGSGKTLAFG 58 (167)
Q Consensus 4 f~~l~l-~~~l~~~l~~~g~~~pt----~iQ~~~ip~~l~~--~~d~i~~a~tgsGKt~~~~ 58 (167)
|..+++ +++.++..+......+- .+-..|.-.++.. .+.+|+++.+|+|||.+--
T Consensus 43 yk~l~~Y~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiiSGESGaGKTes~K 104 (691)
T cd01380 43 YARLPIYGEEIIQAYSGQRKGELDPHIFAIAEEAYKQMTRDEKNQSIIVSGESGAGKTVSAK 104 (691)
T ss_pred CCCCCcCCHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHHH
Confidence 455553 67777766654443332 3555666555543 3579999999999998743
No 310
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=62.85 E-value=7.6 Score=31.27 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=18.1
Q ss_pred HHHHHccCCc--EEEEeecCCCcccccc
Q psy11948 33 MPSALLARKD--IVGAAETGSGKTLAFG 58 (167)
Q Consensus 33 ip~~l~~~~d--~i~~a~tgsGKt~~~~ 58 (167)
++.++.| .+ ++..+.||||||.+..
T Consensus 73 v~~~~~G-~n~~i~ayG~tgSGKTyTm~ 99 (319)
T cd01376 73 VPHLLSG-QNATVFAYGSTGAGKTHTML 99 (319)
T ss_pred HHHHhCC-CceEEEEECCCCCCCcEEEe
Confidence 3445666 44 6677899999999874
No 311
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=62.84 E-value=2.9 Score=39.99 Aligned_cols=22 Identities=41% Similarity=0.617 Sum_probs=16.7
Q ss_pred cccceeeeecccCccceeeecchh
Q psy11948 81 ARKDIVGAAETGSGKTLAFGIPIL 104 (167)
Q Consensus 81 ~~~d~~~~a~tgsgkt~~~~~p~i 104 (167)
.+..++++++||||||. .+|.+
T Consensus 88 ~~~VviI~GeTGSGKTT--qlPq~ 109 (1294)
T PRK11131 88 DHQVVIVAGETGSGKTT--QLPKI 109 (1294)
T ss_pred hCCeEEEECCCCCCHHH--HHHHH
Confidence 44567888999999998 46743
No 312
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=62.80 E-value=6.8 Score=31.85 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=17.4
Q ss_pred HHHHccCCc--EEEEeecCCCcccccc
Q psy11948 34 PSALLARKD--IVGAAETGSGKTLAFG 58 (167)
Q Consensus 34 p~~l~~~~d--~i~~a~tgsGKt~~~~ 58 (167)
..++.| .+ ++.-+.||||||.+..
T Consensus 68 ~~~~~G-~n~ti~aYGqTGSGKTyTm~ 93 (337)
T cd01373 68 EDCLSG-YNGSIFAYGQTGSGKTYTMM 93 (337)
T ss_pred HHHhCC-CceeEEEeCCCCCCceEEec
Confidence 344566 44 6678889999998764
No 313
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=62.10 E-value=3.7 Score=24.98 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=13.5
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
...++.+++|+|||..
T Consensus 24 ~~tli~G~nGsGKSTl 39 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTL 39 (62)
T ss_pred cEEEEECCCCCCHHHH
Confidence 4588999999999974
No 314
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=62.05 E-value=3.9 Score=32.90 Aligned_cols=15 Identities=20% Similarity=0.049 Sum_probs=12.7
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
=+++.++||||||-.
T Consensus 6 ii~I~GpTasGKS~L 20 (300)
T PRK14729 6 IVFIFGPTAVGKSNI 20 (300)
T ss_pred EEEEECCCccCHHHH
Confidence 478999999999964
No 315
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=61.74 E-value=9.1 Score=31.13 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=16.9
Q ss_pred HHHccCC-cEEEEeecCCCccccc
Q psy11948 35 SALLARK-DIVGAAETGSGKTLAF 57 (167)
Q Consensus 35 ~~l~~~~-d~i~~a~tgsGKt~~~ 57 (167)
.++.|.. .++.-+.||||||.+.
T Consensus 82 ~~~~G~n~~i~ayGqtGSGKTyTm 105 (338)
T cd01370 82 GVLNGYNATVFAYGATGAGKTHTM 105 (338)
T ss_pred HHHCCCCceEEeeCCCCCCCeEEE
Confidence 3456622 4678899999999986
No 316
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=61.47 E-value=3.5 Score=30.67 Aligned_cols=18 Identities=33% Similarity=0.512 Sum_probs=14.0
Q ss_pred CcEEEEeecCCCcccccc
Q psy11948 41 KDIVGAAETGSGKTLAFG 58 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~~ 58 (167)
..+++.++.|+|||.-|.
T Consensus 4 ~~vlL~Gps~SGKTaLf~ 21 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFS 21 (181)
T ss_dssp -EEEEE-STTSSHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 679999999999998664
No 317
>PRK11054 helD DNA helicase IV; Provisional
Probab=61.02 E-value=14 Score=33.15 Aligned_cols=35 Identities=20% Similarity=0.130 Sum_probs=26.6
Q ss_pred CCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccc
Q psy11948 21 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 58 (167)
Q Consensus 21 g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~ 58 (167)
.-..+++-|+.++- .+...+++.|.-|||||....
T Consensus 193 e~~~L~~~Q~~av~---~~~~~~lV~agaGSGKT~vl~ 227 (684)
T PRK11054 193 ESSPLNPSQARAVV---NGEDSLLVLAGAGSGKTSVLV 227 (684)
T ss_pred cCCCCCHHHHHHHh---CCCCCeEEEEeCCCCHHHHHH
Confidence 34579999999873 233578999999999998644
No 318
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=60.86 E-value=4.3 Score=30.68 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=17.8
Q ss_pred CcEEEEeecCCCcccccccchhhhhh
Q psy11948 41 KDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
+.+.+.+.||||||.... -++..+.
T Consensus 24 ~H~~I~G~TGsGKS~~~~-~ll~~l~ 48 (229)
T PF01935_consen 24 RHIAIFGTTGSGKSNTVK-VLLEELL 48 (229)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHH
Confidence 789999999999997433 3333443
No 319
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=60.72 E-value=4.6 Score=31.55 Aligned_cols=42 Identities=17% Similarity=0.202 Sum_probs=29.6
Q ss_pred HHHHHCCCCCCchHHHhHHHHHHc------cCCcEEEEeecCCCcccc
Q psy11948 15 RALYQKGFKTPTKIQSMVMPSALL------ARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 15 ~~l~~~g~~~pt~iQ~~~ip~~l~------~~~d~i~~a~tgsGKt~~ 56 (167)
+.+....|.....++..++-.+.. .+.++++.++.|+|||.-
T Consensus 74 k~~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThL 121 (254)
T COG1484 74 KTFEEFDFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHL 121 (254)
T ss_pred CCcccccccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHH
Confidence 334455677777777776654432 336999999999999963
No 320
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=60.57 E-value=8.9 Score=34.14 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.0
Q ss_pred cceeeeecccCccceeeecchhhh
Q psy11948 83 KDIVGAAETGSGKTLAFGIPILTG 106 (167)
Q Consensus 83 ~d~~~~a~tgsgkt~~~~~p~i~~ 106 (167)
..+++.++||+|||..+.+|.+-.
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~ 199 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLS 199 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhh
Confidence 558999999999999999998753
No 321
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=60.13 E-value=5.3 Score=35.30 Aligned_cols=24 Identities=42% Similarity=0.423 Sum_probs=21.0
Q ss_pred cceeeeecccCccceeeecchhhh
Q psy11948 83 KDIVGAAETGSGKTLAFGIPILTG 106 (167)
Q Consensus 83 ~d~~~~a~tgsgkt~~~~~p~i~~ 106 (167)
..+++.++||+|||..|.+|.+-.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~ 182 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLF 182 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHh
Confidence 457889999999999999999765
No 322
>KOG4150|consensus
Probab=59.70 E-value=13 Score=32.95 Aligned_cols=48 Identities=10% Similarity=-0.107 Sum_probs=36.7
Q ss_pred HHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 18 YQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 18 ~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
..+.-+.-..+|..+|.-+-.| +.+++...+.+||.++|-+..+.-..
T Consensus 280 ~~~~~E~~~~~~~~~~~~~~~G-~~~~~~~~~~~GK~~~~~~~s~~~~~ 327 (1034)
T KOG4150|consen 280 NKNTGESGIAISLELLKFASEG-RADGGNEARQAGKGTCPTSGSRKFQT 327 (1034)
T ss_pred hcccccchhhhhHHHHhhhhhc-ccccccchhhcCCccCcccchhhhhh
Confidence 3444556667899999877777 88888999999999998876655444
No 323
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=59.29 E-value=8.7 Score=30.97 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=17.8
Q ss_pred HHHHccC-CcEEEEeecCCCcccccc
Q psy11948 34 PSALLAR-KDIVGAAETGSGKTLAFG 58 (167)
Q Consensus 34 p~~l~~~-~d~i~~a~tgsGKt~~~~ 58 (167)
..++.|. ..++.-+.||||||.+..
T Consensus 78 ~~~~~G~n~~i~ayGqtGSGKTyTm~ 103 (322)
T cd01367 78 PHVFEGGVATCFAYGQTGSGKTYTML 103 (322)
T ss_pred HHHhCCCceEEEeccCCCCCCceEec
Confidence 3445562 246678889999999876
No 324
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=59.09 E-value=5.2 Score=32.81 Aligned_cols=64 Identities=22% Similarity=0.327 Sum_probs=35.0
Q ss_pred CCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhhc-ccCCCCccccccccccceeeeecccCcccee
Q psy11948 24 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN-KLENPTEEDENDSARKDIVGAAETGSGKTLA 98 (167)
Q Consensus 24 ~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~~-~~~~~~~~~~~~~~~~d~~~~a~tgsgkt~~ 98 (167)
-|||..-..+ +. ..|| +..-.=|.+ .+.+..++.+ .... ..+.-.....+++...|||||||+.
T Consensus 49 lPtP~eik~~---Ld--~YVI--GQe~AKKvL--sVAVYNHYKRl~~~~--~~~dvEL~KSNILLiGPTGsGKTlL 113 (408)
T COG1219 49 LPTPKEIKAH---LD--EYVI--GQEQAKKVL--SVAVYNHYKRLNNKE--DNDDVELSKSNILLIGPTGSGKTLL 113 (408)
T ss_pred CCChHHHHHH---hh--hhee--cchhhhcee--eeeehhHHHHHhccC--CCCceeeeeccEEEECCCCCcHHHH
Confidence 5777766544 21 2333 222233433 3344455444 2222 2223447788999999999999953
No 325
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=58.98 E-value=5.4 Score=35.70 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=20.6
Q ss_pred cceeeeecccCccceeeecchhhh
Q psy11948 83 KDIVGAAETGSGKTLAFGIPILTG 106 (167)
Q Consensus 83 ~d~~~~a~tgsgkt~~~~~p~i~~ 106 (167)
..+++.++||+|||..|.+|-+-.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~ 163 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLT 163 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhc
Confidence 467899999999999999987644
No 326
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=58.68 E-value=8.5 Score=33.92 Aligned_cols=30 Identities=23% Similarity=0.231 Sum_probs=26.3
Q ss_pred chHHHhHHHHHHccCCcEEEEeecCCCcccc
Q psy11948 26 TKIQSMVMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 26 t~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
...|+.++-.++.. +-+++.+..|+|||..
T Consensus 147 ~~~Qk~A~~~al~~-~~~vitGgpGTGKTt~ 176 (586)
T TIGR01447 147 QNWQKVAVALALKS-NFSLITGGPGTGKTTT 176 (586)
T ss_pred cHHHHHHHHHHhhC-CeEEEEcCCCCCHHHH
Confidence 37899999888887 8899999999999974
No 327
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=58.19 E-value=8.7 Score=31.15 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=17.7
Q ss_pred HHHHccC-CcEEEEeecCCCcccccc
Q psy11948 34 PSALLAR-KDIVGAAETGSGKTLAFG 58 (167)
Q Consensus 34 p~~l~~~-~d~i~~a~tgsGKt~~~~ 58 (167)
..++.|. ..++.-+.||||||....
T Consensus 74 ~~~~~G~n~~i~ayG~tgSGKTyTm~ 99 (334)
T cd01375 74 DSALDGYNGTIFAYGQTGAGKTFTMT 99 (334)
T ss_pred HHHhCCCccceeeecCCCCCCeEEcc
Confidence 3455562 247788999999998863
No 328
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=58.09 E-value=2.2 Score=38.90 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=19.3
Q ss_pred eeeecccCccceeeecchh-hhh
Q psy11948 86 VGAAETGSGKTLAFGIPIL-TGI 107 (167)
Q Consensus 86 ~~~a~tgsgkt~~~~~p~i-~~~ 107 (167)
++.++||+|||+++.+|++ ..+
T Consensus 98 Iaem~TGeGKTLva~lpa~l~aL 120 (830)
T PRK12904 98 IAEMKTGEGKTLVATLPAYLNAL 120 (830)
T ss_pred hhhhhcCCCcHHHHHHHHHHHHH
Confidence 7899999999999999996 444
No 329
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=58.08 E-value=10 Score=30.55 Aligned_cols=25 Identities=36% Similarity=0.389 Sum_probs=17.9
Q ss_pred HHHHccC-CcEEEEeecCCCcccccc
Q psy11948 34 PSALLAR-KDIVGAAETGSGKTLAFG 58 (167)
Q Consensus 34 p~~l~~~-~d~i~~a~tgsGKt~~~~ 58 (167)
..++.|. ..++..+.||||||.+..
T Consensus 67 ~~~l~G~n~~i~ayG~tgSGKT~T~~ 92 (321)
T cd01374 67 RSALEGYNGTIFAYGQTSSGKTFTMS 92 (321)
T ss_pred HHHHCCCceeEEeecCCCCCCceecc
Confidence 3445662 246788999999998875
No 330
>PRK05580 primosome assembly protein PriA; Validated
Probab=58.08 E-value=3 Score=37.26 Aligned_cols=44 Identities=30% Similarity=0.262 Sum_probs=35.9
Q ss_pred ccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhhhccccccceEEEccc
Q psy11948 82 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 161 (167)
Q Consensus 82 ~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~aLIl~PT 161 (167)
+.+.++.++||+|||.+|+.++...+. ...++|||+||
T Consensus 162 ~~~~Ll~~~TGSGKT~v~l~~i~~~l~------------------------------------------~g~~vLvLvPt 199 (679)
T PRK05580 162 FSPFLLDGVTGSGKTEVYLQAIAEVLA------------------------------------------QGKQALVLVPE 199 (679)
T ss_pred CCcEEEECCCCChHHHHHHHHHHHHHH------------------------------------------cCCeEEEEeCc
Confidence 477899999999999999887665542 12479999999
Q ss_pred hhhhcC
Q psy11948 162 RELAIQ 167 (167)
Q Consensus 162 RELa~Q 167 (167)
++|+.|
T Consensus 200 ~~L~~Q 205 (679)
T PRK05580 200 IALTPQ 205 (679)
T ss_pred HHHHHH
Confidence 999987
No 331
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=57.91 E-value=25 Score=31.66 Aligned_cols=56 Identities=21% Similarity=0.195 Sum_probs=35.1
Q ss_pred ccccCCC-CHHHHHHHHHCC-CCCC----chHHHhHHHHHHcc--CCcEEEEeecCCCcccccc
Q psy11948 3 EWVKFNI-PETIIRALYQKG-FKTP----TKIQSMVMPSALLA--RKDIVGAAETGSGKTLAFG 58 (167)
Q Consensus 3 ~f~~l~l-~~~l~~~l~~~g-~~~p----t~iQ~~~ip~~l~~--~~d~i~~a~tgsGKt~~~~ 58 (167)
-|..+++ +++.++...... .... +.+-..|+..+... ...+|+++.+|+|||.+--
T Consensus 49 Pyk~l~~y~~~~~~~Y~~~~~~~~lpPHiy~iA~~Ay~~m~~~~~~QsIiisGESGAGKTet~K 112 (692)
T cd01385 49 PFKFLPIYNPKYVRLYENQQRLGKLPPHIFAIADVAYYNMLRKKVNQCIVISGESGSGKTESTN 112 (692)
T ss_pred CCcCCCCCCHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHHH
Confidence 3556664 677777665543 2222 23555566555543 3579999999999998743
No 332
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=57.72 E-value=9.4 Score=32.90 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=23.9
Q ss_pred CchHHHhHHHHHHc------cCCcEEEEeecCCCccccc
Q psy11948 25 PTKIQSMVMPSALL------ARKDIVGAAETGSGKTLAF 57 (167)
Q Consensus 25 pt~iQ~~~ip~~l~------~~~d~i~~a~tgsGKt~~~ 57 (167)
-++||.....++.. .+.-+.+++++|+|||.-.
T Consensus 11 ~r~Ie~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLL 49 (504)
T TIGR03238 11 KRKIQTDLERILVKFNKELPSSSLLFLCGSSGDGKSEIL 49 (504)
T ss_pred chHHHHHHHHHHhCCceeecCCCEEEEECCCCCCHHHHH
Confidence 36788877665532 3367889999999999743
No 333
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=57.46 E-value=5.1 Score=29.72 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=15.7
Q ss_pred CcEEEEeecCCCcccccccchhhhhh
Q psy11948 41 KDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
.++++.+.||||||.+... ++..+.
T Consensus 39 ~h~li~G~tgsGKS~~l~~-ll~~l~ 63 (205)
T PF01580_consen 39 PHLLIAGATGSGKSTLLRT-LLLSLA 63 (205)
T ss_dssp -SEEEE--TTSSHHHHHHH-HHHHHH
T ss_pred ceEEEEcCCCCCccHHHHH-HHHHHH
Confidence 4899999999999985543 433333
No 334
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=56.64 E-value=24 Score=31.76 Aligned_cols=55 Identities=13% Similarity=0.176 Sum_probs=34.7
Q ss_pred cccCC--CCHHHHHHHHHCCCCCC----chHHHhHHHHHHcc--CCcEEEEeecCCCcccccc
Q psy11948 4 WVKFN--IPETIIRALYQKGFKTP----TKIQSMVMPSALLA--RKDIVGAAETGSGKTLAFG 58 (167)
Q Consensus 4 f~~l~--l~~~l~~~l~~~g~~~p----t~iQ~~~ip~~l~~--~~d~i~~a~tgsGKt~~~~ 58 (167)
|..++ .+++.++.........+ ..+-..|+-.+... ...+|+.+.+|+|||.+.-
T Consensus 44 yk~l~~iy~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K 106 (674)
T cd01384 44 FQRLPHLYDVHMMEQYKGAALGELSPHVFAIADAAYRAMINEGKSQSILVSGESGAGKTETTK 106 (674)
T ss_pred CCcCCcCCCHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHcCCCceEEEECCCCCCchhHHH
Confidence 45555 35666666655443322 23555666666543 2579999999999998743
No 335
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=56.54 E-value=9.4 Score=30.94 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=17.5
Q ss_pred HHHccCC--cEEEEeecCCCcccccc
Q psy11948 35 SALLARK--DIVGAAETGSGKTLAFG 58 (167)
Q Consensus 35 ~~l~~~~--d~i~~a~tgsGKt~~~~ 58 (167)
.++.| . .++..+.||||||.++.
T Consensus 68 ~~~~G-~n~~i~ayG~tgSGKT~Tm~ 92 (341)
T cd01372 68 GLFEG-YNATVLAYGQTGSGKTYTMG 92 (341)
T ss_pred HHhCC-CccceeeecCCCCCCcEEec
Confidence 34566 4 47788999999999864
No 336
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=56.28 E-value=4.7 Score=33.70 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=14.9
Q ss_pred CCcEEEEeecCCCcccc
Q psy11948 40 RKDIVGAAETGSGKTLA 56 (167)
Q Consensus 40 ~~d~i~~a~tgsGKt~~ 56 (167)
.+.+++.++.|+|||+.
T Consensus 179 pkgvLL~GppGTGKT~L 195 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTML 195 (398)
T ss_pred CceEEEECCCCCCHHHH
Confidence 37899999999999974
No 337
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=55.90 E-value=3 Score=38.39 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=21.1
Q ss_pred eeeeecccCccceeeecchhhhhhh
Q psy11948 85 IVGAAETGSGKTLAFGIPILTGIVN 109 (167)
Q Consensus 85 ~~~~a~tgsgkt~~~~~p~i~~~~~ 109 (167)
-++.++||.|||+++.+|++...+.
T Consensus 98 ~IaEm~TGEGKTL~a~lp~~l~al~ 122 (908)
T PRK13107 98 RIAEMRTGEGKTLTATLPAYLNALT 122 (908)
T ss_pred ccccccCCCCchHHHHHHHHHHHhc
Confidence 3678999999999999999866653
No 338
>PRK07261 topology modulation protein; Provisional
Probab=55.83 E-value=5.8 Score=28.83 Aligned_cols=15 Identities=33% Similarity=0.361 Sum_probs=12.8
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
-+++.+++|+|||..
T Consensus 2 ri~i~G~~GsGKSTl 16 (171)
T PRK07261 2 KIAIIGYSGSGKSTL 16 (171)
T ss_pred EEEEEcCCCCCHHHH
Confidence 478899999999974
No 339
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=55.75 E-value=19 Score=26.26 Aligned_cols=44 Identities=20% Similarity=0.232 Sum_probs=31.4
Q ss_pred HHHHHHHHHCCCC-----CCchHHHhHHHHHHccCCcEEEEeecCCCccc
Q psy11948 11 ETIIRALYQKGFK-----TPTKIQSMVMPSALLARKDIVGAAETGSGKTL 55 (167)
Q Consensus 11 ~~l~~~l~~~g~~-----~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~ 55 (167)
+++++...+.||. .-+......+...+.+ +-+++.+++|.||+.
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~-k~~vl~G~SGvGKSS 50 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKG-KTSVLLGQSGVGKSS 50 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTT-SEEEEECSTTSSHHH
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcC-CEEEEECCCCCCHHH
Confidence 4556667777764 2233445556667788 899999999999985
No 340
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=55.37 E-value=9.1 Score=30.82 Aligned_cols=26 Identities=35% Similarity=0.300 Sum_probs=17.7
Q ss_pred HHHHccCCc--EEEEeecCCCcccccccc
Q psy11948 34 PSALLARKD--IVGAAETGSGKTLAFGIP 60 (167)
Q Consensus 34 p~~l~~~~d--~i~~a~tgsGKt~~~~lp 60 (167)
..++.| .+ +++.+.||||||.+..=+
T Consensus 68 ~~~l~G-~n~~i~ayG~tgSGKT~Tm~G~ 95 (335)
T PF00225_consen 68 DSVLDG-YNATIFAYGQTGSGKTYTMFGS 95 (335)
T ss_dssp HHHHTT--EEEEEEEESTTSSHHHHHTBS
T ss_pred HHhhcC-CceEEEeecccccccccccccc
Confidence 345666 54 667888999999765543
No 341
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=55.35 E-value=27 Score=31.52 Aligned_cols=55 Identities=20% Similarity=0.230 Sum_probs=33.4
Q ss_pred cccCC-CCHHHHHHHHHCCCCCCc----hHHHhHHHHHHcc--CCcEEEEeecCCCcccccc
Q psy11948 4 WVKFN-IPETIIRALYQKGFKTPT----KIQSMVMPSALLA--RKDIVGAAETGSGKTLAFG 58 (167)
Q Consensus 4 f~~l~-l~~~l~~~l~~~g~~~pt----~iQ~~~ip~~l~~--~~d~i~~a~tgsGKt~~~~ 58 (167)
|..++ .+++.++..+........ .+-..|...+... .+.||+++.+|+|||.+.-
T Consensus 48 ~k~l~ly~~~~~~~Y~~~~~~~~~PHiyaiA~~Ay~~m~~~~~~QsIiiSGESGAGKTes~K 109 (693)
T cd01377 48 YKRLPIYTEEVVEMYRGKKREEMPPHIFAIADNAYRSMLQDRENQSILITGESGAGKTENTK 109 (693)
T ss_pred CccCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHHH
Confidence 45555 356666655544322222 2444555555542 3579999999999998743
No 342
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=55.24 E-value=11 Score=30.58 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=16.7
Q ss_pred HHHHccC-CcEEEEeecCCCccccc
Q psy11948 34 PSALLAR-KDIVGAAETGSGKTLAF 57 (167)
Q Consensus 34 p~~l~~~-~d~i~~a~tgsGKt~~~ 57 (167)
+.++.|. ..++..+.||||||...
T Consensus 75 ~~~~~G~n~~i~ayG~tgSGKTyTm 99 (333)
T cd01371 75 DSVLEGYNGTIFAYGQTGTGKTFTM 99 (333)
T ss_pred HHHhCCCceeEEecCCCCCCCcEee
Confidence 3445552 24778889999999775
No 343
>PHA02244 ATPase-like protein
Probab=55.17 E-value=12 Score=31.09 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=17.0
Q ss_pred HHHccCCcEEEEeecCCCccc
Q psy11948 35 SALLARKDIVGAAETGSGKTL 55 (167)
Q Consensus 35 ~~l~~~~d~i~~a~tgsGKt~ 55 (167)
.++..+.++++.+++|+|||.
T Consensus 114 r~l~~~~PVLL~GppGtGKTt 134 (383)
T PHA02244 114 KIVNANIPVFLKGGAGSGKNH 134 (383)
T ss_pred HHHhcCCCEEEECCCCCCHHH
Confidence 344445899999999999995
No 344
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=55.14 E-value=7.4 Score=34.80 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=21.7
Q ss_pred cceeeeecccCccceeeecchhhhh
Q psy11948 83 KDIVGAAETGSGKTLAFGIPILTGI 107 (167)
Q Consensus 83 ~d~~~~a~tgsgkt~~~~~p~i~~~ 107 (167)
..+++.++||+||+..+.+|.+-..
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~ 169 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTW 169 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhC
Confidence 5678999999999999999987543
No 345
>PRK06921 hypothetical protein; Provisional
Probab=54.85 E-value=23 Score=27.83 Aligned_cols=16 Identities=38% Similarity=0.501 Sum_probs=14.2
Q ss_pred CCcEEEEeecCCCccc
Q psy11948 40 RKDIVGAAETGSGKTL 55 (167)
Q Consensus 40 ~~d~i~~a~tgsGKt~ 55 (167)
+..+++.+++|+|||.
T Consensus 117 ~~~l~l~G~~G~GKTh 132 (266)
T PRK06921 117 KNSIALLGQPGSGKTH 132 (266)
T ss_pred CCeEEEECCCCCcHHH
Confidence 3779999999999995
No 346
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=54.58 E-value=6.5 Score=27.47 Aligned_cols=13 Identities=38% Similarity=0.544 Sum_probs=11.4
Q ss_pred EEEEeecCCCccc
Q psy11948 43 IVGAAETGSGKTL 55 (167)
Q Consensus 43 ~i~~a~tgsGKt~ 55 (167)
+++.+++|+|||.
T Consensus 2 i~i~GpsGsGKst 14 (137)
T cd00071 2 IVLSGPSGVGKST 14 (137)
T ss_pred EEEECCCCCCHHH
Confidence 5788999999996
No 347
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=54.38 E-value=6.1 Score=27.31 Aligned_cols=14 Identities=50% Similarity=0.508 Sum_probs=11.9
Q ss_pred EEEEeecCCCcccc
Q psy11948 43 IVGAAETGSGKTLA 56 (167)
Q Consensus 43 ~i~~a~tgsGKt~~ 56 (167)
+++.+++|+|||..
T Consensus 2 ~~i~G~~G~GKT~l 15 (165)
T cd01120 2 ILVFGPTGSGKTTL 15 (165)
T ss_pred eeEeCCCCCCHHHH
Confidence 57889999999973
No 348
>KOG1805|consensus
Probab=54.01 E-value=16 Score=34.04 Aligned_cols=47 Identities=19% Similarity=0.142 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCccccccc
Q psy11948 9 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 59 (167)
Q Consensus 9 l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~l 59 (167)
+.|++.+. -+..+...|++|+-.++......++.+-.|+|||.....
T Consensus 658 ~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~ 704 (1100)
T KOG1805|consen 658 LIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISL 704 (1100)
T ss_pred cCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHH
Confidence 44555443 235778899999988888767788999999999986543
No 349
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=53.94 E-value=29 Score=31.13 Aligned_cols=55 Identities=20% Similarity=0.189 Sum_probs=34.8
Q ss_pred ccccCC-CCHHHHHHHHHCCCC----CCchHHHhHHHHHHcc--CCcEEEEeecCCCccccc
Q psy11948 3 EWVKFN-IPETIIRALYQKGFK----TPTKIQSMVMPSALLA--RKDIVGAAETGSGKTLAF 57 (167)
Q Consensus 3 ~f~~l~-l~~~l~~~l~~~g~~----~pt~iQ~~~ip~~l~~--~~d~i~~a~tgsGKt~~~ 57 (167)
-|..++ .+++.++........ ++..+-..|+..++.. ...+|+++.+|+|||.+-
T Consensus 42 Py~~l~~y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 42 PYKDLPNYGPETIRKYRGKSRSELPPHVFAIADRAYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred CCCCCCCCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 355555 466666665544322 2233555666666642 357999999999999874
No 350
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=53.77 E-value=7.3 Score=34.14 Aligned_cols=52 Identities=25% Similarity=0.261 Sum_probs=28.5
Q ss_pred HHHHHHHHHCCCCCCchHHHhHHHHHH--ccCCcEEEEeecCCCcccccccchhhhh
Q psy11948 11 ETIIRALYQKGFKTPTKIQSMVMPSAL--LARKDIVGAAETGSGKTLAFGIPILTGI 65 (167)
Q Consensus 11 ~~l~~~l~~~g~~~pt~iQ~~~ip~~l--~~~~d~i~~a~tgsGKt~~~~lp~l~~~ 65 (167)
.++.+.+++.+- .+++.---+|.+. ...+++++.++||||||.. +..++..+
T Consensus 147 ~~l~~~l~~~~~--~~~~~igg~pl~~~~~e~~h~li~G~tGsGKs~~-i~~ll~~~ 200 (566)
T TIGR02759 147 KELIKKLKKSRR--ASDIKIGGLPLIKFGSETQHILIHGTTGSGKSVA-IRKLLRWI 200 (566)
T ss_pred HHHHHHHHhcCC--CCceeeCCccCCCCcccccceEEEcCCCCCHHHH-HHHHHHHH
Confidence 455666665542 2222222334311 2236899999999999963 33444444
No 351
>KOG2373|consensus
Probab=53.20 E-value=6.6 Score=32.61 Aligned_cols=30 Identities=33% Similarity=0.291 Sum_probs=19.8
Q ss_pred HHhHHHHH---HccCC---cEEEEeecCCCcccccc
Q psy11948 29 QSMVMPSA---LLARK---DIVGAAETGSGKTLAFG 58 (167)
Q Consensus 29 Q~~~ip~~---l~~~~---d~i~~a~tgsGKt~~~~ 58 (167)
|-+-+|.+ +.|.+ =.+..++||||||....
T Consensus 256 ~WkRFpvLNk~LkGhR~GElTvlTGpTGsGKTTFls 291 (514)
T KOG2373|consen 256 QWKRFPVLNKYLKGHRPGELTVLTGPTGSGKTTFLS 291 (514)
T ss_pred eehhhhHHHHHhccCCCCceEEEecCCCCCceeEeh
Confidence 55555543 44422 47789999999997533
No 352
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=53.19 E-value=31 Score=31.08 Aligned_cols=54 Identities=20% Similarity=0.266 Sum_probs=33.3
Q ss_pred cccCCC-CHHHHHHHHHCCCCCC----chHHHhHHHHHHc--cCCcEEEEeecCCCccccc
Q psy11948 4 WVKFNI-PETIIRALYQKGFKTP----TKIQSMVMPSALL--ARKDIVGAAETGSGKTLAF 57 (167)
Q Consensus 4 f~~l~l-~~~l~~~l~~~g~~~p----t~iQ~~~ip~~l~--~~~d~i~~a~tgsGKt~~~ 57 (167)
|..+++ +++.++.......... ..+-..|...++. ....+|+++.+|+|||.+.
T Consensus 44 ~k~l~ly~~~~~~~Y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 44 YKMFPIYGPEQVQQYAGRALGENPPHLFAIANLAFAKMLDAKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred CCCCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCeehHH
Confidence 455554 5666665544333322 2355566655653 2357999999999999874
No 353
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=53.03 E-value=6.8 Score=31.60 Aligned_cols=15 Identities=47% Similarity=0.339 Sum_probs=12.8
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
=++++++||+|||..
T Consensus 6 ~i~i~GptgsGKt~l 20 (307)
T PRK00091 6 VIVIVGPTASGKTAL 20 (307)
T ss_pred EEEEECCCCcCHHHH
Confidence 478999999999964
No 354
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=52.98 E-value=11 Score=30.75 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=16.6
Q ss_pred HHHccCCc--EEEEeecCCCcccccc
Q psy11948 35 SALLARKD--IVGAAETGSGKTLAFG 58 (167)
Q Consensus 35 ~~l~~~~d--~i~~a~tgsGKt~~~~ 58 (167)
.++.| .+ ++.-+.||||||.+..
T Consensus 76 ~~~~G-~n~~i~ayG~tgSGKTyTl~ 100 (352)
T cd01364 76 EVLMG-YNCTIFAYGQTGTGKTYTME 100 (352)
T ss_pred HHhCC-CeEEEEECCCCCCCCcEEec
Confidence 34556 44 6677899999998763
No 355
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=52.89 E-value=6.5 Score=31.12 Aligned_cols=17 Identities=35% Similarity=0.345 Sum_probs=14.1
Q ss_pred CcEEEEeecCCCccccc
Q psy11948 41 KDIVGAAETGSGKTLAF 57 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~ 57 (167)
.-++++++||+|||...
T Consensus 195 ~vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTL 211 (282)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46779999999999743
No 356
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=52.68 E-value=17 Score=29.18 Aligned_cols=25 Identities=36% Similarity=0.407 Sum_probs=17.6
Q ss_pred HHHHHccCCc--EEEEeecCCCcccccc
Q psy11948 33 MPSALLARKD--IVGAAETGSGKTLAFG 58 (167)
Q Consensus 33 ip~~l~~~~d--~i~~a~tgsGKt~~~~ 58 (167)
+..++.| .+ ++..+.||||||....
T Consensus 71 v~~~~~G-~~~~i~~yG~tgSGKT~tl~ 97 (328)
T cd00106 71 VESVLEG-YNGTIFAYGQTGSGKTYTMF 97 (328)
T ss_pred HHHHhCC-CceeEEEecCCCCCCeEEec
Confidence 3444566 44 6678999999998754
No 357
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=52.66 E-value=16 Score=29.47 Aligned_cols=25 Identities=36% Similarity=0.442 Sum_probs=17.6
Q ss_pred HHHHccCC-cEEEEeecCCCcccccc
Q psy11948 34 PSALLARK-DIVGAAETGSGKTLAFG 58 (167)
Q Consensus 34 p~~l~~~~-d~i~~a~tgsGKt~~~~ 58 (167)
..++.|.. .+++.+.||||||....
T Consensus 73 ~~~~~G~~~~i~~yG~tgSGKT~tl~ 98 (335)
T smart00129 73 DSVLEGYNATIFAYGQTGSGKTYTMS 98 (335)
T ss_pred HHHhcCCceeEEEeCCCCCCCceEec
Confidence 33456622 35678999999998875
No 358
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=52.49 E-value=28 Score=31.24 Aligned_cols=54 Identities=19% Similarity=0.239 Sum_probs=32.9
Q ss_pred cccCC-CCHHHHHHHHHCCCCCCc----hHHHhHHHHHHcc--CCcEEEEeecCCCccccc
Q psy11948 4 WVKFN-IPETIIRALYQKGFKTPT----KIQSMVMPSALLA--RKDIVGAAETGSGKTLAF 57 (167)
Q Consensus 4 f~~l~-l~~~l~~~l~~~g~~~pt----~iQ~~~ip~~l~~--~~d~i~~a~tgsGKt~~~ 57 (167)
|..++ .+++.++..+........ .+-..|+-.+... ...+|+.+.+|+|||.+.
T Consensus 49 ~~~l~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 49 YKQLPIYTDEVIKKYRGKSRGELPPHVFAIADNAYRNMLNDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred CccCCCCCHHHHHHccCCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence 45555 356666655544333222 2445555555542 357999999999999874
No 359
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=52.35 E-value=8.6 Score=34.67 Aligned_cols=50 Identities=24% Similarity=0.369 Sum_probs=27.6
Q ss_pred ccccCCCCHHHHHHHHHC---CCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccc
Q psy11948 3 EWVKFNIPETIIRALYQK---GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~---g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
+|.+++-.+.+.+.|.+. .+..|.-.+...+ .-.+.+++.+++|+|||+.
T Consensus 451 ~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~----~~~~giLL~GppGtGKT~l 503 (733)
T TIGR01243 451 RWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGI----RPPKGVLLFGPPGTGKTLL 503 (733)
T ss_pred chhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCC----CCCceEEEECCCCCCHHHH
Confidence 466666555665555532 2222222222111 1125689999999999973
No 360
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=52.32 E-value=14 Score=31.65 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=20.2
Q ss_pred HHhHHHHHHccCCcEEEEeecCCCcccc
Q psy11948 29 QSMVMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 29 Q~~~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
....+..+..+ .++++.+++|+|||..
T Consensus 184 le~l~~~L~~~-~~iil~GppGtGKT~l 210 (459)
T PRK11331 184 IETILKRLTIK-KNIILQGPPGVGKTFV 210 (459)
T ss_pred HHHHHHHHhcC-CCEEEECCCCCCHHHH
Confidence 33444555555 8999999999999964
No 361
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=52.27 E-value=7 Score=27.96 Aligned_cols=16 Identities=38% Similarity=0.607 Sum_probs=10.8
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
+.+++.++.|+|||..
T Consensus 25 ~~~ll~G~~G~GKT~l 40 (185)
T PF13191_consen 25 RNLLLTGESGSGKTSL 40 (185)
T ss_dssp --EEE-B-TTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 6799999999999963
No 362
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=51.88 E-value=36 Score=30.61 Aligned_cols=55 Identities=18% Similarity=0.152 Sum_probs=34.4
Q ss_pred cccCCC-CHHHHHHHHHCCCCCC----chHHHhHHHHHHcc--CCcEEEEeecCCCcccccc
Q psy11948 4 WVKFNI-PETIIRALYQKGFKTP----TKIQSMVMPSALLA--RKDIVGAAETGSGKTLAFG 58 (167)
Q Consensus 4 f~~l~l-~~~l~~~l~~~g~~~p----t~iQ~~~ip~~l~~--~~d~i~~a~tgsGKt~~~~ 58 (167)
|..+++ +++.++.......... ..+-..|...++.. ...+|+.+.+|+|||.+.-
T Consensus 43 y~~l~ly~~~~~~~Y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K 104 (674)
T cd01378 43 FKQLPIYTDETIELYKGKSRYELPPHIYALADNAYRSMKSENENQCVIISGESGAGKTEAAK 104 (674)
T ss_pred CCCCCCCCHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEEcCCCCCcchHHH
Confidence 455553 6777776654433222 23445566555542 3579999999999998743
No 363
>PF05729 NACHT: NACHT domain
Probab=51.85 E-value=7.7 Score=27.03 Aligned_cols=15 Identities=33% Similarity=0.350 Sum_probs=12.6
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
=+++.+..|+|||..
T Consensus 2 ~l~I~G~~G~GKStl 16 (166)
T PF05729_consen 2 VLWISGEPGSGKSTL 16 (166)
T ss_pred EEEEECCCCCChHHH
Confidence 367899999999973
No 364
>PRK08118 topology modulation protein; Reviewed
Probab=51.69 E-value=7.3 Score=28.22 Aligned_cols=15 Identities=33% Similarity=0.437 Sum_probs=13.0
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
.+++.++.|||||..
T Consensus 3 rI~I~G~~GsGKSTl 17 (167)
T PRK08118 3 KIILIGSGGSGKSTL 17 (167)
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999973
No 365
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=51.65 E-value=13 Score=33.45 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=25.8
Q ss_pred CCCchHHHhHHHHHHccCCcEEEEeecCCCcccccc
Q psy11948 23 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 58 (167)
Q Consensus 23 ~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~ 58 (167)
..+++-|.+++-. ....+++.|..|||||.+..
T Consensus 3 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~~L~ 35 (715)
T TIGR01075 3 DGLNDKQREAVAA---PPGNLLVLAGAGSGKTRVLT 35 (715)
T ss_pred cccCHHHHHHHcC---CCCCEEEEecCCCCHHHHHH
Confidence 4689999998743 22589999999999998643
No 366
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=51.59 E-value=7.9 Score=28.94 Aligned_cols=16 Identities=31% Similarity=0.304 Sum_probs=14.2
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
..+++.+++|+|||..
T Consensus 39 ~~lll~G~~G~GKT~l 54 (226)
T TIGR03420 39 RFLYLWGESGSGKSHL 54 (226)
T ss_pred CeEEEECCCCCCHHHH
Confidence 6899999999999963
No 367
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=51.53 E-value=11 Score=33.98 Aligned_cols=34 Identities=21% Similarity=0.157 Sum_probs=26.4
Q ss_pred CCCchHHHhHHHHHHccCCcEEEEeecCCCccccccc
Q psy11948 23 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 59 (167)
Q Consensus 23 ~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~l 59 (167)
..+++-|.+++-. ....+++.|.-|||||.....
T Consensus 3 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~~l~~ 36 (726)
T TIGR01073 3 AHLNPEQREAVKT---TEGPLLIMAGAGSGKTRVLTH 36 (726)
T ss_pred cccCHHHHHHHhC---CCCCEEEEeCCCCCHHHHHHH
Confidence 4588999998853 226899999999999986543
No 368
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=51.33 E-value=7.6 Score=31.37 Aligned_cols=14 Identities=57% Similarity=0.487 Sum_probs=12.2
Q ss_pred EEEEeecCCCcccc
Q psy11948 43 IVGAAETGSGKTLA 56 (167)
Q Consensus 43 ~i~~a~tgsGKt~~ 56 (167)
+++++||++|||-.
T Consensus 6 i~I~GPTAsGKT~l 19 (308)
T COG0324 6 IVIAGPTASGKTAL 19 (308)
T ss_pred EEEECCCCcCHHHH
Confidence 67899999999964
No 369
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=51.03 E-value=34 Score=31.26 Aligned_cols=54 Identities=13% Similarity=0.125 Sum_probs=33.4
Q ss_pred cccCC-CCHHHHHHHHHCCCCCC----chHHHhHHHHHHcc--CCcEEEEeecCCCccccc
Q psy11948 4 WVKFN-IPETIIRALYQKGFKTP----TKIQSMVMPSALLA--RKDIVGAAETGSGKTLAF 57 (167)
Q Consensus 4 f~~l~-l~~~l~~~l~~~g~~~p----t~iQ~~~ip~~l~~--~~d~i~~a~tgsGKt~~~ 57 (167)
|..++ .++++++..+....... ..+-..|.-.++.. .+.||+++.+|+|||.+-
T Consensus 43 yk~l~iY~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 43 MAPLALYSEKVPSMFRGCKAEDMPPHIYSLAQTAYRALLETRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred CCCCCCCCHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHHHcCCCceEEEecCCCCCcHHHH
Confidence 45556 36667666655433322 22444555555532 357999999999999873
No 370
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=50.97 E-value=15 Score=29.50 Aligned_cols=26 Identities=38% Similarity=0.488 Sum_probs=18.6
Q ss_pred HHHHHHccCCc--EEEEeecCCCcccccc
Q psy11948 32 VMPSALLARKD--IVGAAETGSGKTLAFG 58 (167)
Q Consensus 32 ~ip~~l~~~~d--~i~~a~tgsGKt~~~~ 58 (167)
.+..++.| .+ ++..+.||||||.+..
T Consensus 69 ~v~~~~~G-~~~~i~ayG~tgSGKT~tl~ 96 (329)
T cd01366 69 LVQSALDG-YNVCIFAYGQTGSGKTYTME 96 (329)
T ss_pred HHHHHhCC-CceEEEEeCCCCCCCcEEec
Confidence 34445566 44 6678899999999874
No 371
>PRK06547 hypothetical protein; Provisional
Probab=50.88 E-value=12 Score=27.39 Aligned_cols=15 Identities=33% Similarity=0.470 Sum_probs=11.3
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
-+++.++.|||||..
T Consensus 17 ~i~i~G~~GsGKTt~ 31 (172)
T PRK06547 17 TVLIDGRSGSGKTTL 31 (172)
T ss_pred EEEEECCCCCCHHHH
Confidence 345568999999973
No 372
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=50.81 E-value=15 Score=32.69 Aligned_cols=22 Identities=23% Similarity=0.224 Sum_probs=19.7
Q ss_pred cceeeeecccCccceeeecchh
Q psy11948 83 KDIVGAAETGSGKTLAFGIPIL 104 (167)
Q Consensus 83 ~d~~~~a~tgsgkt~~~~~p~i 104 (167)
..+++.++||+|||..+.+|.+
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnL 233 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTA 233 (623)
T ss_pred ceEEEEeCCCCCccceeehhhh
Confidence 5678999999999999999974
No 373
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=50.49 E-value=8.6 Score=26.52 Aligned_cols=14 Identities=29% Similarity=0.359 Sum_probs=12.6
Q ss_pred cEEEEeecCCCccc
Q psy11948 42 DIVGAAETGSGKTL 55 (167)
Q Consensus 42 d~i~~a~tgsGKt~ 55 (167)
|+++.+.+|+|||.
T Consensus 1 ~i~l~G~~g~GKTt 14 (170)
T cd01876 1 EIAFAGRSNVGKSS 14 (170)
T ss_pred CEEEEcCCCCCHHH
Confidence 68899999999996
No 374
>KOG0924|consensus
Probab=50.36 E-value=17 Score=32.92 Aligned_cols=16 Identities=50% Similarity=0.561 Sum_probs=13.9
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
+-|++.+.||||||.-
T Consensus 372 ~vvvivgETGSGKTTQ 387 (1042)
T KOG0924|consen 372 QVVVIVGETGSGKTTQ 387 (1042)
T ss_pred cEEEEEecCCCCchhh
Confidence 6688999999999974
No 375
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=50.11 E-value=8.3 Score=28.24 Aligned_cols=16 Identities=38% Similarity=0.258 Sum_probs=13.9
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+++.+++|+|||..
T Consensus 3 ~~i~l~G~sGsGKsTl 18 (186)
T PRK10078 3 KLIWLMGPSGSGKDSL 18 (186)
T ss_pred cEEEEECCCCCCHHHH
Confidence 5688999999999975
No 376
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=49.99 E-value=16 Score=29.01 Aligned_cols=15 Identities=40% Similarity=0.532 Sum_probs=13.4
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
.+++.+++|+|||..
T Consensus 38 ~lll~Gp~GtGKT~l 52 (337)
T PRK12402 38 HLLVQGPPGSGKTAA 52 (337)
T ss_pred eEEEECCCCCCHHHH
Confidence 799999999999963
No 377
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=49.97 E-value=16 Score=32.76 Aligned_cols=54 Identities=19% Similarity=0.250 Sum_probs=32.8
Q ss_pred cccCC-CCHHHHHHHHHCCCCCCc----hHHHhHHHHHHccC--CcEEEEeecCCCccccc
Q psy11948 4 WVKFN-IPETIIRALYQKGFKTPT----KIQSMVMPSALLAR--KDIVGAAETGSGKTLAF 57 (167)
Q Consensus 4 f~~l~-l~~~l~~~l~~~g~~~pt----~iQ~~~ip~~l~~~--~d~i~~a~tgsGKt~~~ 57 (167)
|..++ .++..+............ .+-..|+..+...+ +.||+++.+|+|||.+.
T Consensus 42 ~~~l~~y~~~~~~~y~~~~~~~~~PHif~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 42 YKPLPLYSDEVMEKYRGKRRQDLPPHIFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SS--STSSHHHHHHHTTS-GGGS-SSHHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred chhhhhhhhhhhhhhhhhccccccCccchhhhcccccccccccccceeeccccccccccch
Confidence 55555 466777766654433333 35556666665432 46999999999999873
No 378
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=49.69 E-value=8.2 Score=29.98 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=14.0
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.++++.+++|+|||..
T Consensus 43 ~~vll~GppGtGKTtl 58 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTV 58 (261)
T ss_pred ceEEEEcCCCCCHHHH
Confidence 5789999999999964
No 379
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=49.66 E-value=8.3 Score=30.55 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=14.3
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.++++.+++|+|||..
T Consensus 59 ~~vll~G~pGTGKT~l 74 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTV 74 (284)
T ss_pred ceEEEEcCCCCCHHHH
Confidence 5899999999999974
No 380
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=49.52 E-value=8 Score=28.25 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=12.9
Q ss_pred CcEEEEeecCCCccc
Q psy11948 41 KDIVGAAETGSGKTL 55 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~ 55 (167)
..++..+|||+|||.
T Consensus 4 ~~~ll~GpsGvGKT~ 18 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTE 18 (171)
T ss_dssp EEEEEESSTTSSHHH
T ss_pred EEEEEECCCCCCHHH
Confidence 367899999999995
No 381
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=49.36 E-value=13 Score=33.54 Aligned_cols=33 Identities=21% Similarity=0.215 Sum_probs=25.8
Q ss_pred CCCchHHHhHHHHHHccCCcEEEEeecCCCcccccc
Q psy11948 23 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 58 (167)
Q Consensus 23 ~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~ 58 (167)
..+++-|.+++-. ....+++.|..|||||.+..
T Consensus 8 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~vl~ 40 (721)
T PRK11773 8 DSLNDKQREAVAA---PLGNMLVLAGAGSGKTRVLV 40 (721)
T ss_pred HhcCHHHHHHHhC---CCCCEEEEecCCCCHHHHHH
Confidence 3589999998742 23589999999999998653
No 382
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=49.24 E-value=6.9 Score=27.79 Aligned_cols=14 Identities=36% Similarity=0.394 Sum_probs=11.4
Q ss_pred EEEEeecCCCcccc
Q psy11948 43 IVGAAETGSGKTLA 56 (167)
Q Consensus 43 ~i~~a~tgsGKt~~ 56 (167)
+++++++|+|||..
T Consensus 1 i~l~G~~GsGKSTl 14 (163)
T TIGR01313 1 FVLMGVAGSGKSTI 14 (163)
T ss_pred CEEECCCCCCHHHH
Confidence 46789999999864
No 383
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=49.07 E-value=23 Score=30.13 Aligned_cols=49 Identities=14% Similarity=0.289 Sum_probs=28.9
Q ss_pred CHHHHHHHHHCCCCCC--chHHH-hHHHH---HHccCCcEEEEeecCCCcccccc
Q psy11948 10 PETIIRALYQKGFKTP--TKIQS-MVMPS---ALLARKDIVGAAETGSGKTLAFG 58 (167)
Q Consensus 10 ~~~l~~~l~~~g~~~p--t~iQ~-~~ip~---~l~~~~d~i~~a~tgsGKt~~~~ 58 (167)
.+|+---|...||... +.-|+ ..+.. ++..+.+++..+++|+|||..|.
T Consensus 173 dEWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 173 EEWIDVLIRSIGYEPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred HHHHHHHHHhcCCCcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHH
Confidence 4455555677887422 22111 11211 23444899999999999995443
No 384
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=48.97 E-value=17 Score=32.40 Aligned_cols=22 Identities=23% Similarity=0.128 Sum_probs=19.7
Q ss_pred cceeeeecccCccceeeecchh
Q psy11948 83 KDIVGAAETGSGKTLAFGIPIL 104 (167)
Q Consensus 83 ~d~~~~a~tgsgkt~~~~~p~i 104 (167)
..+++.++||+|||..+.+|.+
T Consensus 225 ~H~Lv~ApTgsGKt~g~VIPnL 246 (641)
T PRK13822 225 THGLVFAGSGGFKTTSVVVPTA 246 (641)
T ss_pred ceEEEEeCCCCCccceEehhhh
Confidence 4568899999999999999975
No 385
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=48.90 E-value=9.1 Score=28.21 Aligned_cols=13 Identities=54% Similarity=0.511 Sum_probs=11.1
Q ss_pred EEEEeecCCCccc
Q psy11948 43 IVGAAETGSGKTL 55 (167)
Q Consensus 43 ~i~~a~tgsGKt~ 55 (167)
|.+++++|||||.
T Consensus 2 IgI~G~sgSGKTT 14 (194)
T PF00485_consen 2 IGIAGPSGSGKTT 14 (194)
T ss_dssp EEEEESTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 4578999999996
No 386
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=48.73 E-value=15 Score=33.88 Aligned_cols=35 Identities=26% Similarity=0.244 Sum_probs=23.5
Q ss_pred HHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 32 VMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 32 ~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
-|-.++....-++++++||||||.....-++..-+
T Consensus 57 ~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~ 91 (845)
T COG1643 57 EILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL 91 (845)
T ss_pred HHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc
Confidence 33334444477899999999999876555554443
No 387
>PRK06620 hypothetical protein; Validated
Probab=48.71 E-value=9.5 Score=28.89 Aligned_cols=16 Identities=25% Similarity=0.243 Sum_probs=13.5
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
+.+++.++.|+|||.-
T Consensus 45 ~~l~l~Gp~G~GKThL 60 (214)
T PRK06620 45 FTLLIKGPSSSGKTYL 60 (214)
T ss_pred ceEEEECCCCCCHHHH
Confidence 4489999999999963
No 388
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=48.67 E-value=11 Score=34.77 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=17.9
Q ss_pred ccceeeeecccCccceeeecchh
Q psy11948 82 RKDIVGAAETGSGKTLAFGIPIL 104 (167)
Q Consensus 82 ~~d~~~~a~tgsgkt~~~~~p~i 104 (167)
..++=+..+||+|||-+|+--++
T Consensus 74 ~lNiDI~METGTGKTy~Ylrtmf 96 (985)
T COG3587 74 KLNIDILMETGTGKTYTYLRTMF 96 (985)
T ss_pred cceeeEEEecCCCceeeHHHHHH
Confidence 34555689999999999986555
No 389
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=48.59 E-value=21 Score=33.11 Aligned_cols=42 Identities=26% Similarity=0.273 Sum_probs=31.6
Q ss_pred CCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 21 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 21 g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
|. .|+++|...-=.+..| -|+.-.||-|||++..+|..-.-+
T Consensus 76 G~-r~ydVQliGglvLh~G---~IAEMkTGEGKTLvAtLpayLnAL 117 (925)
T PRK12903 76 GK-RPYDVQIIGGIILDLG---SVAEMKTGEGKTITSIAPVYLNAL 117 (925)
T ss_pred CC-CcCchHHHHHHHHhcC---CeeeecCCCCccHHHHHHHHHHHh
Confidence 55 8899998877544444 378999999999998888754433
No 390
>PRK13766 Hef nuclease; Provisional
Probab=48.46 E-value=5.3 Score=36.08 Aligned_cols=44 Identities=34% Similarity=0.324 Sum_probs=35.4
Q ss_pred cceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhhhccccccceEEEccch
Q psy11948 83 KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 162 (167)
Q Consensus 83 ~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~aLIl~PTR 162 (167)
++.+++++||+|||..+++++...+. ....++|||+||+
T Consensus 30 ~n~lv~~ptG~GKT~~a~~~i~~~l~-----------------------------------------~~~~~vLvl~Pt~ 68 (773)
T PRK13766 30 KNTLVVLPTGLGKTAIALLVIAERLH-----------------------------------------KKGGKVLILAPTK 68 (773)
T ss_pred CCeEEEcCCCccHHHHHHHHHHHHHH-----------------------------------------hCCCeEEEEeCcH
Confidence 48999999999999988887775542 1224799999999
Q ss_pred hhhcC
Q psy11948 163 ELAIQ 167 (167)
Q Consensus 163 ELa~Q 167 (167)
+|+.|
T Consensus 69 ~L~~Q 73 (773)
T PRK13766 69 PLVEQ 73 (773)
T ss_pred HHHHH
Confidence 99976
No 391
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=48.20 E-value=10 Score=28.61 Aligned_cols=15 Identities=27% Similarity=0.279 Sum_probs=13.5
Q ss_pred CcEEEEeecCCCccc
Q psy11948 41 KDIVGAAETGSGKTL 55 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~ 55 (167)
..+++.+++|+|||.
T Consensus 43 ~~~~l~G~~G~GKT~ 57 (227)
T PRK08903 43 RFFYLWGEAGSGRSH 57 (227)
T ss_pred CeEEEECCCCCCHHH
Confidence 579999999999995
No 392
>PRK08233 hypothetical protein; Provisional
Probab=48.12 E-value=9 Score=27.48 Aligned_cols=13 Identities=54% Similarity=0.562 Sum_probs=10.7
Q ss_pred EEEEeecCCCccc
Q psy11948 43 IVGAAETGSGKTL 55 (167)
Q Consensus 43 ~i~~a~tgsGKt~ 55 (167)
+.+.+.+|||||.
T Consensus 6 I~I~G~~GsGKtT 18 (182)
T PRK08233 6 ITIAAVSGGGKTT 18 (182)
T ss_pred EEEECCCCCCHHH
Confidence 4567899999996
No 393
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=48.00 E-value=3.1 Score=32.31 Aligned_cols=45 Identities=27% Similarity=0.186 Sum_probs=25.0
Q ss_pred HHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccc
Q psy11948 11 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 11 ~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
+++.++|...|.....+.=-..+.-+..| .-+++.+++|+|||..
T Consensus 2 ~~~~~~~~~~~~~tg~~~Ld~~~gG~~~g-~~~~i~g~~G~GKT~l 46 (271)
T cd01122 2 EEIREALSNEEVWWPFPVLNKLTKGLRKG-ELIILTAGTGVGKTTF 46 (271)
T ss_pred chhhccccccCCCCCcceeeeeeEEEcCC-cEEEEEcCCCCCHHHH
Confidence 34556666444433222111222223334 6788999999999973
No 394
>KOG0738|consensus
Probab=47.98 E-value=11 Score=31.79 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=17.6
Q ss_pred HHHHcc----CCcEEEEeecCCCcccc
Q psy11948 34 PSALLA----RKDIVGAAETGSGKTLA 56 (167)
Q Consensus 34 p~~l~~----~~d~i~~a~tgsGKt~~ 56 (167)
|.++.| .+.|+..+|.|+|||+-
T Consensus 235 Pe~F~GirrPWkgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 235 PEFFKGIRRPWKGVLMVGPPGTGKTLL 261 (491)
T ss_pred HHHHhhcccccceeeeeCCCCCcHHHH
Confidence 444544 45799999999999973
No 395
>PRK13531 regulatory ATPase RavA; Provisional
Probab=47.94 E-value=20 Score=31.00 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=18.0
Q ss_pred HHHccCCcEEEEeecCCCcccc
Q psy11948 35 SALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 35 ~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
.++.| .++++.+++|+|||..
T Consensus 35 aalag-~hVLL~GpPGTGKT~L 55 (498)
T PRK13531 35 AALSG-ESVFLLGPPGIAKSLI 55 (498)
T ss_pred HHccC-CCEEEECCCChhHHHH
Confidence 45667 8999999999999974
No 396
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=47.72 E-value=9.5 Score=27.48 Aligned_cols=14 Identities=29% Similarity=0.347 Sum_probs=12.1
Q ss_pred EEEEeecCCCcccc
Q psy11948 43 IVGAAETGSGKTLA 56 (167)
Q Consensus 43 ~i~~a~tgsGKt~~ 56 (167)
+++.+++|+|||..
T Consensus 2 ~li~G~~G~GKT~l 15 (187)
T cd01124 2 TLLSGGPGTGKTTF 15 (187)
T ss_pred EEEEcCCCCCHHHH
Confidence 57899999999973
No 397
>KOG0060|consensus
Probab=47.71 E-value=9.2 Score=33.68 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=16.2
Q ss_pred HccCCcEEEEeecCCCcccc
Q psy11948 37 LLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 37 l~~~~d~i~~a~tgsGKt~~ 56 (167)
..| .++++++++|+|||.-
T Consensus 459 ~~g-~~LLItG~sG~GKtSL 477 (659)
T KOG0060|consen 459 PSG-QNLLITGPSGCGKTSL 477 (659)
T ss_pred cCC-CeEEEECCCCCchhHH
Confidence 456 8999999999999963
No 398
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=47.35 E-value=23 Score=35.80 Aligned_cols=55 Identities=11% Similarity=0.093 Sum_probs=39.3
Q ss_pred CCchHHHhHHHHHHcc-CCcEEEEeecCCCcccccccchhhhhhcccCCCCccccccccccceeeeeccc
Q psy11948 24 TPTKIQSMVMPSALLA-RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSARKDIVGAAETG 92 (167)
Q Consensus 24 ~pt~iQ~~~ip~~l~~-~~d~i~~a~tgsGKt~~~~lp~l~~~~~~~~~~~~~~~~~~~~~d~~~~a~tg 92 (167)
.+++-|..++-.++.. .+=.++.+.-|+|||.. +-.+..++ ...|+.+++.||||
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~--l~~l~~~~------------~~~G~~V~~lAPTg 484 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI--AQLLLHLA------------SEQGYEIQIITAGS 484 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH--HHHHHHHH------------HhcCCeEEEEeCCH
Confidence 5889999999887764 35678899999999963 22222222 13467888999887
No 399
>PRK08727 hypothetical protein; Validated
Probab=46.98 E-value=9.8 Score=29.12 Aligned_cols=15 Identities=27% Similarity=0.286 Sum_probs=13.1
Q ss_pred CcEEEEeecCCCccc
Q psy11948 41 KDIVGAAETGSGKTL 55 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~ 55 (167)
..+++.+++|+|||.
T Consensus 42 ~~l~l~G~~G~GKTh 56 (233)
T PRK08727 42 DWLYLSGPAGTGKTH 56 (233)
T ss_pred CeEEEECCCCCCHHH
Confidence 458999999999994
No 400
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=46.71 E-value=23 Score=28.92 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=16.5
Q ss_pred HHccCCcEEEEeecCCCcccc
Q psy11948 36 ALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 36 ~l~~~~d~i~~a~tgsGKt~~ 56 (167)
+..+ +++++.+++|+|||..
T Consensus 61 l~~~-~~ilL~G~pGtGKTtl 80 (327)
T TIGR01650 61 FAYD-RRVMVQGYHGTGKSTH 80 (327)
T ss_pred HhcC-CcEEEEeCCCChHHHH
Confidence 3344 8999999999999974
No 401
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=46.70 E-value=19 Score=24.92 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=14.9
Q ss_pred ccCCcEEEEeecCCCcccc
Q psy11948 38 LARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 38 ~~~~d~i~~a~tgsGKt~~ 56 (167)
.....|++.+..|+||+..
T Consensus 19 ~~~~pvli~GE~GtGK~~~ 37 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLL 37 (138)
T ss_dssp CSSS-EEEECCTTSSHHHH
T ss_pred CCCCcEEEEcCCCCCHHHH
Confidence 3448999999999999873
No 402
>PRK00131 aroK shikimate kinase; Reviewed
Probab=46.48 E-value=9 Score=27.13 Aligned_cols=16 Identities=31% Similarity=0.349 Sum_probs=14.3
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
..+++.++.|||||..
T Consensus 5 ~~i~l~G~~GsGKstl 20 (175)
T PRK00131 5 PNIVLIGFMGAGKSTI 20 (175)
T ss_pred CeEEEEcCCCCCHHHH
Confidence 6789999999999975
No 403
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.39 E-value=11 Score=27.74 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=14.8
Q ss_pred EEEEeecCCCcccccccc
Q psy11948 43 IVGAAETGSGKTLAFGIP 60 (167)
Q Consensus 43 ~i~~a~tgsGKt~~~~lp 60 (167)
.|+.+++|||||..|..-
T Consensus 5 ~IvaG~NGsGKstv~~~~ 22 (187)
T COG4185 5 DIVAGPNGSGKSTVYAST 22 (187)
T ss_pred EEEecCCCCCceeeeecc
Confidence 467799999999988753
No 404
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=46.29 E-value=23 Score=30.69 Aligned_cols=41 Identities=27% Similarity=0.313 Sum_probs=27.1
Q ss_pred CCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 24 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 24 ~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
++-..|....-..+. ++.+++-|||-|||+...+-+...+.
T Consensus 15 e~R~YQ~~i~a~al~--~NtLvvlPTGLGKT~IA~~V~~~~l~ 55 (542)
T COG1111 15 EPRLYQLNIAAKALF--KNTLVVLPTGLGKTFIAAMVIANRLR 55 (542)
T ss_pred cHHHHHHHHHHHHhh--cCeEEEecCCccHHHHHHHHHHHHHH
Confidence 444456555544443 48999999999999876655544443
No 405
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=46.25 E-value=10 Score=30.31 Aligned_cols=14 Identities=29% Similarity=0.226 Sum_probs=12.1
Q ss_pred EEEEeecCCCcccc
Q psy11948 43 IVGAAETGSGKTLA 56 (167)
Q Consensus 43 ~i~~a~tgsGKt~~ 56 (167)
+++.++||+|||..
T Consensus 2 i~i~G~t~~GKs~l 15 (287)
T TIGR00174 2 IFIMGPTAVGKSQL 15 (287)
T ss_pred EEEECCCCCCHHHH
Confidence 57899999999964
No 406
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=46.23 E-value=9.9 Score=27.41 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=13.8
Q ss_pred CcEEEEeecCCCccccc
Q psy11948 41 KDIVGAAETGSGKTLAF 57 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~ 57 (167)
.-+++.+++|+|||...
T Consensus 2 ~~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLL 18 (179)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 34789999999999754
No 407
>KOG0090|consensus
Probab=46.21 E-value=15 Score=28.26 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=17.4
Q ss_pred cCCcEEEEeecCCCccccccc
Q psy11948 39 ARKDIVGAAETGSGKTLAFGI 59 (167)
Q Consensus 39 ~~~d~i~~a~tgsGKt~~~~l 59 (167)
..++|++.++.+||||.-|..
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~q 57 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQ 57 (238)
T ss_pred cCCcEEEEecCCCCceeeeee
Confidence 346999999999999987653
No 408
>PHA02558 uvsW UvsW helicase; Provisional
Probab=46.13 E-value=7.5 Score=33.37 Aligned_cols=21 Identities=19% Similarity=0.053 Sum_probs=16.9
Q ss_pred ccccceeeeecccCccceeee
Q psy11948 80 SARKDIVGAAETGSGKTLAFG 100 (167)
Q Consensus 80 ~~~~d~~~~a~tgsgkt~~~~ 100 (167)
..+.+.++.++||+|||+.+.
T Consensus 127 l~~~~~il~apTGsGKT~i~~ 147 (501)
T PHA02558 127 LKNNRRLLNLPTSAGKSLIQY 147 (501)
T ss_pred HhcCceEEEeCCCCCHHHHHH
Confidence 345678999999999998653
No 409
>PRK12377 putative replication protein; Provisional
Probab=45.97 E-value=26 Score=27.31 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=13.9
Q ss_pred CCcEEEEeecCCCccc
Q psy11948 40 RKDIVGAAETGSGKTL 55 (167)
Q Consensus 40 ~~d~i~~a~tgsGKt~ 55 (167)
...+++.+++|+|||.
T Consensus 101 ~~~l~l~G~~GtGKTh 116 (248)
T PRK12377 101 CTNFVFSGKPGTGKNH 116 (248)
T ss_pred CCeEEEECCCCCCHHH
Confidence 3579999999999995
No 410
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=45.56 E-value=13 Score=28.96 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=17.1
Q ss_pred HccCCcEEEEeecCCCcccccccchh
Q psy11948 37 LLARKDIVGAAETGSGKTLAFGIPIL 62 (167)
Q Consensus 37 l~~~~d~i~~a~tgsGKt~~~~lp~l 62 (167)
+...-.+++.+++|||||. +++.++
T Consensus 10 ~~~~fr~viIG~sGSGKT~-li~~lL 34 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTT-LIKSLL 34 (241)
T ss_pred cCCCceEEEECCCCCCHHH-HHHHHH
Confidence 3333478899999999997 333333
No 411
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=45.52 E-value=51 Score=25.50 Aligned_cols=63 Identities=17% Similarity=0.276 Sum_probs=45.9
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHcc--CCcEEEEeecCCCcccccccchhhhhhc
Q psy11948 2 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA--RKDIVGAAETGSGKTLAFGIPILTGIVN 67 (167)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~--~~d~i~~a~tgsGKt~~~~lp~l~~~~~ 67 (167)
++|+-+..|.+|+--+. .++ -.-+.|......+.+. +.+.+.+-..|.|||. ..+|++...+.
T Consensus 3 ~~w~p~~~P~wLl~E~e-~~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTs-VI~Pmla~~LA 67 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIE-SNI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTS-VIVPMLALALA 67 (229)
T ss_pred CCCCchhChHHHHHHHH-cCc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccc-hHHHHHHHHHc
Confidence 46777778888876444 344 5678888888777642 3789999999999997 45677766663
No 412
>PRK00300 gmk guanylate kinase; Provisional
Probab=45.37 E-value=12 Score=27.62 Aligned_cols=15 Identities=33% Similarity=0.383 Sum_probs=13.4
Q ss_pred CcEEEEeecCCCccc
Q psy11948 41 KDIVGAAETGSGKTL 55 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~ 55 (167)
.-+++.+++|+|||.
T Consensus 6 ~~i~i~G~sGsGKst 20 (205)
T PRK00300 6 LLIVLSGPSGAGKST 20 (205)
T ss_pred CEEEEECCCCCCHHH
Confidence 678899999999996
No 413
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=45.26 E-value=12 Score=25.44 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=13.4
Q ss_pred CcEEEEeecCCCccc
Q psy11948 41 KDIVGAAETGSGKTL 55 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~ 55 (167)
.-+.+.+++|+|||.
T Consensus 12 ~~~~i~G~nGsGKSt 26 (137)
T PF00005_consen 12 EIVAIVGPNGSGKST 26 (137)
T ss_dssp SEEEEEESTTSSHHH
T ss_pred CEEEEEccCCCcccc
Confidence 678899999999997
No 414
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=45.14 E-value=11 Score=29.19 Aligned_cols=15 Identities=33% Similarity=0.441 Sum_probs=13.1
Q ss_pred CcEEEEeecCCCccc
Q psy11948 41 KDIVGAAETGSGKTL 55 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~ 55 (167)
.=+.+++|+|||||.
T Consensus 29 evv~iiGpSGSGKST 43 (240)
T COG1126 29 EVVVIIGPSGSGKST 43 (240)
T ss_pred CEEEEECCCCCCHHH
Confidence 567899999999986
No 415
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=44.89 E-value=11 Score=31.37 Aligned_cols=18 Identities=28% Similarity=0.187 Sum_probs=15.2
Q ss_pred CcEEEEeecCCCcccccc
Q psy11948 41 KDIVGAAETGSGKTLAFG 58 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~~ 58 (167)
..+++.++||+|||....
T Consensus 138 ~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTA 155 (374)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 678899999999998643
No 416
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=44.84 E-value=12 Score=26.92 Aligned_cols=15 Identities=33% Similarity=0.335 Sum_probs=13.0
Q ss_pred CcEEEEeecCCCccc
Q psy11948 41 KDIVGAAETGSGKTL 55 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~ 55 (167)
+=+++.+++|+|||.
T Consensus 2 ~ii~l~G~~GsGKsT 16 (180)
T TIGR03263 2 LLIVISGPSGVGKST 16 (180)
T ss_pred cEEEEECCCCCCHHH
Confidence 457899999999997
No 417
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=44.74 E-value=11 Score=27.80 Aligned_cols=14 Identities=50% Similarity=0.470 Sum_probs=11.4
Q ss_pred EEEEeecCCCcccc
Q psy11948 43 IVGAAETGSGKTLA 56 (167)
Q Consensus 43 ~i~~a~tgsGKt~~ 56 (167)
+.+.+++|||||..
T Consensus 2 igi~G~~GsGKSTl 15 (198)
T cd02023 2 IGIAGGSGSGKTTV 15 (198)
T ss_pred EEEECCCCCCHHHH
Confidence 45789999999973
No 418
>PRK06217 hypothetical protein; Validated
Probab=44.59 E-value=11 Score=27.54 Aligned_cols=15 Identities=33% Similarity=0.341 Sum_probs=12.7
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
.|++.+.+|||||..
T Consensus 3 ~I~i~G~~GsGKSTl 17 (183)
T PRK06217 3 RIHITGASGSGTTTL 17 (183)
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999964
No 419
>PRK06762 hypothetical protein; Provisional
Probab=44.55 E-value=11 Score=26.81 Aligned_cols=14 Identities=43% Similarity=0.494 Sum_probs=12.0
Q ss_pred cEEEEeecCCCccc
Q psy11948 42 DIVGAAETGSGKTL 55 (167)
Q Consensus 42 d~i~~a~tgsGKt~ 55 (167)
=+++++..|||||.
T Consensus 4 li~i~G~~GsGKST 17 (166)
T PRK06762 4 LIIIRGNSGSGKTT 17 (166)
T ss_pred EEEEECCCCCCHHH
Confidence 36789999999997
No 420
>PRK14737 gmk guanylate kinase; Provisional
Probab=44.54 E-value=11 Score=27.80 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=13.3
Q ss_pred CcEEEEeecCCCccc
Q psy11948 41 KDIVGAAETGSGKTL 55 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~ 55 (167)
+=+++++++|+||+.
T Consensus 5 ~~ivl~GpsG~GK~t 19 (186)
T PRK14737 5 KLFIISSVAGGGKST 19 (186)
T ss_pred eEEEEECCCCCCHHH
Confidence 568899999999986
No 421
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=44.50 E-value=22 Score=33.61 Aligned_cols=34 Identities=32% Similarity=0.173 Sum_probs=23.9
Q ss_pred CCchHHHhHHHHHHc-------cCCcEEEEeecCCCccccc
Q psy11948 24 TPTKIQSMVMPSALL-------ARKDIVGAAETGSGKTLAF 57 (167)
Q Consensus 24 ~pt~iQ~~~ip~~l~-------~~~d~i~~a~tgsGKt~~~ 57 (167)
.-...|-+|+..+.. -+--++-.|.||+|||++-
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aN 448 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLAN 448 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHH
Confidence 344578888876653 1135777899999999974
No 422
>PRK14531 adenylate kinase; Provisional
Probab=44.19 E-value=12 Score=27.37 Aligned_cols=16 Identities=19% Similarity=0.301 Sum_probs=13.9
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
+.+++.++.|||||.-
T Consensus 3 ~~i~i~G~pGsGKsT~ 18 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQ 18 (183)
T ss_pred cEEEEECCCCCCHHHH
Confidence 5689999999999874
No 423
>PRK06893 DNA replication initiation factor; Validated
Probab=43.98 E-value=12 Score=28.55 Aligned_cols=14 Identities=21% Similarity=-0.019 Sum_probs=12.2
Q ss_pred cEEEEeecCCCccc
Q psy11948 42 DIVGAAETGSGKTL 55 (167)
Q Consensus 42 d~i~~a~tgsGKt~ 55 (167)
.+++.+++|+|||.
T Consensus 41 ~l~l~G~~G~GKTh 54 (229)
T PRK06893 41 FFYIWGGKSSGKSH 54 (229)
T ss_pred eEEEECCCCCCHHH
Confidence 36899999999994
No 424
>PRK05480 uridine/cytidine kinase; Provisional
Probab=43.96 E-value=11 Score=28.00 Aligned_cols=16 Identities=44% Similarity=0.289 Sum_probs=12.6
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+.+.+++|||||..
T Consensus 7 ~iI~I~G~sGsGKTTl 22 (209)
T PRK05480 7 IIIGIAGGSGSGKTTV 22 (209)
T ss_pred EEEEEECCCCCCHHHH
Confidence 3466889999999963
No 425
>PRK08084 DNA replication initiation factor; Provisional
Probab=43.93 E-value=13 Score=28.55 Aligned_cols=15 Identities=20% Similarity=0.202 Sum_probs=13.5
Q ss_pred CcEEEEeecCCCccc
Q psy11948 41 KDIVGAAETGSGKTL 55 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~ 55 (167)
..+++.+++|+|||.
T Consensus 46 ~~l~l~Gp~G~GKTh 60 (235)
T PRK08084 46 GYIYLWSREGAGRSH 60 (235)
T ss_pred CeEEEECCCCCCHHH
Confidence 578999999999995
No 426
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=43.89 E-value=11 Score=27.19 Aligned_cols=16 Identities=31% Similarity=0.218 Sum_probs=12.6
Q ss_pred cEEEEeecCCCccccc
Q psy11948 42 DIVGAAETGSGKTLAF 57 (167)
Q Consensus 42 d~i~~a~tgsGKt~~~ 57 (167)
=.++.+++|+|||..+
T Consensus 21 ~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 21 LNVIYGPNGSGKSTIL 36 (202)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 3567889999999744
No 427
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=43.79 E-value=13 Score=22.55 Aligned_cols=13 Identities=38% Similarity=0.519 Sum_probs=10.8
Q ss_pred EEEEeecCCCccc
Q psy11948 43 IVGAAETGSGKTL 55 (167)
Q Consensus 43 ~i~~a~tgsGKt~ 55 (167)
+.+++..|+|||.
T Consensus 2 i~i~G~~gsGKst 14 (69)
T cd02019 2 IAITGGSGSGKST 14 (69)
T ss_pred EEEECCCCCCHHH
Confidence 4678899999986
No 428
>KOG0246|consensus
Probab=43.48 E-value=19 Score=31.69 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=19.1
Q ss_pred HHHHHccCC-cEEEEeecCCCccccc
Q psy11948 33 MPSALLARK-DIVGAAETGSGKTLAF 57 (167)
Q Consensus 33 ip~~l~~~~-d~i~~a~tgsGKt~~~ 57 (167)
++.++.|+. .+++-+.||||||...
T Consensus 284 V~~IF~~G~ATCFAYGQTGSGKT~TM 309 (676)
T KOG0246|consen 284 VKTIFEGGMATCFAYGQTGSGKTYTM 309 (676)
T ss_pred HHHHHhCCceeeeeeccCCCCceeec
Confidence 355565544 6788999999999987
No 429
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=43.46 E-value=11 Score=27.50 Aligned_cols=13 Identities=46% Similarity=0.488 Sum_probs=11.1
Q ss_pred EEEEeecCCCccc
Q psy11948 43 IVGAAETGSGKTL 55 (167)
Q Consensus 43 ~i~~a~tgsGKt~ 55 (167)
+.+.+.+|||||.
T Consensus 2 i~i~G~sgsGKtt 14 (179)
T cd02028 2 VGIAGPSGSGKTT 14 (179)
T ss_pred EEEECCCCCCHHH
Confidence 4678899999997
No 430
>PTZ00301 uridine kinase; Provisional
Probab=43.38 E-value=11 Score=28.51 Aligned_cols=14 Identities=36% Similarity=0.385 Sum_probs=11.1
Q ss_pred EEEEeecCCCcccc
Q psy11948 43 IVGAAETGSGKTLA 56 (167)
Q Consensus 43 ~i~~a~tgsGKt~~ 56 (167)
|.+.+++|||||..
T Consensus 6 IgIaG~SgSGKTTl 19 (210)
T PTZ00301 6 IGISGASGSGKSSL 19 (210)
T ss_pred EEEECCCcCCHHHH
Confidence 44788899999973
No 431
>PRK14530 adenylate kinase; Provisional
Probab=42.85 E-value=13 Score=27.91 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=13.8
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
..+++.+++|||||..
T Consensus 4 ~~I~i~G~pGsGKsT~ 19 (215)
T PRK14530 4 PRILLLGAPGAGKGTQ 19 (215)
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999964
No 432
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=42.85 E-value=13 Score=31.34 Aligned_cols=16 Identities=50% Similarity=0.611 Sum_probs=14.2
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.++++.+++|+|||..
T Consensus 109 ~~iLl~Gp~GtGKT~l 124 (412)
T PRK05342 109 SNILLIGPTGSGKTLL 124 (412)
T ss_pred ceEEEEcCCCCCHHHH
Confidence 5799999999999964
No 433
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=42.72 E-value=12 Score=27.91 Aligned_cols=14 Identities=43% Similarity=0.333 Sum_probs=11.7
Q ss_pred cEEEEeecCCCccc
Q psy11948 42 DIVGAAETGSGKTL 55 (167)
Q Consensus 42 d~i~~a~tgsGKt~ 55 (167)
=+.+.+++|||||.
T Consensus 8 vi~I~G~sGsGKST 21 (207)
T TIGR00235 8 IIGIGGGSGSGKTT 21 (207)
T ss_pred EEEEECCCCCCHHH
Confidence 35688999999996
No 434
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=42.64 E-value=13 Score=26.83 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=14.0
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
+-++++++.|||||..
T Consensus 3 ~~i~l~G~~gsGKst~ 18 (175)
T cd00227 3 RIIILNGGSSAGKSSI 18 (175)
T ss_pred CEEEEECCCCCCHHHH
Confidence 5688999999999975
No 435
>PLN02165 adenylate isopentenyltransferase
Probab=42.46 E-value=12 Score=30.58 Aligned_cols=17 Identities=41% Similarity=0.364 Sum_probs=14.0
Q ss_pred CcEEEEeecCCCccccc
Q psy11948 41 KDIVGAAETGSGKTLAF 57 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~ 57 (167)
.-+++.++||+|||...
T Consensus 44 ~iivIiGPTGSGKStLA 60 (334)
T PLN02165 44 KVVVIMGATGSGKSRLS 60 (334)
T ss_pred CEEEEECCCCCcHHHHH
Confidence 45889999999999643
No 436
>PRK05642 DNA replication initiation factor; Validated
Probab=42.27 E-value=13 Score=28.42 Aligned_cols=15 Identities=20% Similarity=0.162 Sum_probs=13.1
Q ss_pred CcEEEEeecCCCccc
Q psy11948 41 KDIVGAAETGSGKTL 55 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~ 55 (167)
..+++.+++|+|||-
T Consensus 46 ~~l~l~G~~G~GKTH 60 (234)
T PRK05642 46 SLIYLWGKDGVGRSH 60 (234)
T ss_pred CeEEEECCCCCCHHH
Confidence 468899999999995
No 437
>CHL00181 cbbX CbbX; Provisional
Probab=42.13 E-value=13 Score=29.62 Aligned_cols=16 Identities=25% Similarity=0.318 Sum_probs=14.0
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.++++.+++|+|||..
T Consensus 60 ~~ill~G~pGtGKT~l 75 (287)
T CHL00181 60 LHMSFTGSPGTGKTTV 75 (287)
T ss_pred ceEEEECCCCCCHHHH
Confidence 5689999999999974
No 438
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=42.06 E-value=14 Score=24.37 Aligned_cols=13 Identities=46% Similarity=0.601 Sum_probs=11.6
Q ss_pred EEEEeecCCCccc
Q psy11948 43 IVGAAETGSGKTL 55 (167)
Q Consensus 43 ~i~~a~tgsGKt~ 55 (167)
+++.+..|+|||.
T Consensus 2 I~V~G~~g~GKTs 14 (119)
T PF08477_consen 2 IVVLGDSGVGKTS 14 (119)
T ss_dssp EEEECSTTSSHHH
T ss_pred EEEECcCCCCHHH
Confidence 6789999999995
No 439
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=42.03 E-value=13 Score=26.80 Aligned_cols=15 Identities=33% Similarity=0.262 Sum_probs=12.4
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
-+++.++.|||||..
T Consensus 5 ii~i~G~~GsGKsTl 19 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQ 19 (188)
T ss_pred EEEEECCCCCCHHHH
Confidence 366789999999974
No 440
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=41.51 E-value=13 Score=25.83 Aligned_cols=14 Identities=43% Similarity=0.534 Sum_probs=11.7
Q ss_pred EEEEeecCCCcccc
Q psy11948 43 IVGAAETGSGKTLA 56 (167)
Q Consensus 43 ~i~~a~tgsGKt~~ 56 (167)
++++++.|+|||..
T Consensus 2 i~l~G~~GsGKST~ 15 (150)
T cd02021 2 IVVMGVSGSGKSTV 15 (150)
T ss_pred EEEEcCCCCCHHHH
Confidence 56889999999874
No 441
>PRK07952 DNA replication protein DnaC; Validated
Probab=41.47 E-value=31 Score=26.79 Aligned_cols=16 Identities=19% Similarity=0.360 Sum_probs=13.7
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
..+++.+++|+|||..
T Consensus 100 ~~~~l~G~~GtGKThL 115 (244)
T PRK07952 100 ASFIFSGKPGTGKNHL 115 (244)
T ss_pred ceEEEECCCCCCHHHH
Confidence 4689999999999963
No 442
>KOG0922|consensus
Probab=41.43 E-value=25 Score=31.40 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=15.5
Q ss_pred HccCCcEEEEeecCCCccc
Q psy11948 37 LLARKDIVGAAETGSGKTL 55 (167)
Q Consensus 37 l~~~~d~i~~a~tgsGKt~ 55 (167)
+..+.-+|+.+.||||||.
T Consensus 63 ve~nqvlIviGeTGsGKST 81 (674)
T KOG0922|consen 63 VEDNQVLIVIGETGSGKST 81 (674)
T ss_pred HHHCCEEEEEcCCCCCccc
Confidence 3444778999999999997
No 443
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=41.37 E-value=16 Score=28.07 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=15.0
Q ss_pred CcEEEEeecCCCccccccc
Q psy11948 41 KDIVGAAETGSGKTLAFGI 59 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~~l 59 (167)
.=|-+-+|+|.|||.+|-.
T Consensus 31 EiVGLLGPNGAGKTT~Fym 49 (243)
T COG1137 31 EIVGLLGPNGAGKTTTFYM 49 (243)
T ss_pred cEEEEECCCCCCceeEEEE
Confidence 4455789999999999853
No 444
>KOG0920|consensus
Probab=41.27 E-value=25 Score=32.70 Aligned_cols=41 Identities=24% Similarity=0.198 Sum_probs=26.7
Q ss_pred CchHHHhHH-HHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 25 PTKIQSMVM-PSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 25 pt~iQ~~~i-p~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
|.--+++.| .++... .-+++++.||+|||.-..--++....
T Consensus 173 Pa~~~r~~Il~~i~~~-qVvvIsGeTGcGKTTQvpQfiLd~~~ 214 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEEN-QVVVISGETGCGKTTQVPQFILDEAI 214 (924)
T ss_pred ccHHHHHHHHHHHHhC-ceEEEeCCCCCCchhhhhHHHHHHHH
Confidence 333344444 444444 78899999999999865555555543
No 445
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=41.02 E-value=11 Score=32.57 Aligned_cols=15 Identities=40% Similarity=0.550 Sum_probs=13.9
Q ss_pred CcEEEEeecCCCccc
Q psy11948 41 KDIVGAAETGSGKTL 55 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~ 55 (167)
+.+++.+++|+|||+
T Consensus 217 ~GILLyGPPGTGKT~ 231 (512)
T TIGR03689 217 KGVLLYGPPGCGKTL 231 (512)
T ss_pred cceEEECCCCCcHHH
Confidence 679999999999997
No 446
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=40.79 E-value=20 Score=28.28 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=19.0
Q ss_pred hHHHHHHccC--CcEEEEeecCCCcccc
Q psy11948 31 MVMPSALLAR--KDIVGAAETGSGKTLA 56 (167)
Q Consensus 31 ~~ip~~l~~~--~d~i~~a~tgsGKt~~ 56 (167)
..++.+...+ .++++.+++|+|||..
T Consensus 100 ~~l~~l~~~~~~~~~~i~g~~g~GKttl 127 (270)
T TIGR02858 100 KLLPYLVRNNRVLNTLIISPPQCGKTTL 127 (270)
T ss_pred HHHHHHHhCCCeeEEEEEcCCCCCHHHH
Confidence 3355666443 5789999999999974
No 447
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=40.73 E-value=13 Score=31.11 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=14.5
Q ss_pred CcEEEEeecCCCccccc
Q psy11948 41 KDIVGAAETGSGKTLAF 57 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~ 57 (167)
..+++.++||+|||.+.
T Consensus 175 ~vi~lvGptGvGKTTT~ 191 (388)
T PRK12723 175 RVFILVGPTGVGKTTTI 191 (388)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 56889999999999764
No 448
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=40.72 E-value=19 Score=32.06 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=18.3
Q ss_pred CcEEEEeecCCCcccccccchhhhhh
Q psy11948 41 KDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
.++++.++||+|||..+ ..++.+..
T Consensus 177 ~H~lv~G~TGsGKT~l~-~~l~~q~i 201 (634)
T TIGR03743 177 GHTLVLGTTGVGKTRLA-ELLITQDI 201 (634)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHHH
Confidence 57899999999999765 33444443
No 449
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=40.65 E-value=50 Score=29.03 Aligned_cols=17 Identities=35% Similarity=0.366 Sum_probs=14.4
Q ss_pred CcEEEEeecCCCccccc
Q psy11948 41 KDIVGAAETGSGKTLAF 57 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~ 57 (167)
.-+.+.+++|+|||...
T Consensus 351 ~vIaLVGPtGvGKTTta 367 (559)
T PRK12727 351 GVIALVGPTGAGKTTTI 367 (559)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 67778999999999754
No 450
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=40.54 E-value=23 Score=28.52 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=18.3
Q ss_pred HHHHccCCcEEEEeecCCCcccc
Q psy11948 34 PSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 34 p~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
-+++.| ..+++.+++|.|||..
T Consensus 38 ~a~~~~-~~vll~G~PG~gKT~l 59 (329)
T COG0714 38 LALLAG-GHVLLEGPPGVGKTLL 59 (329)
T ss_pred HHHHcC-CCEEEECCCCccHHHH
Confidence 345667 8999999999999974
No 451
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=40.50 E-value=15 Score=25.50 Aligned_cols=15 Identities=40% Similarity=0.470 Sum_probs=12.7
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
+++++++.|+|||..
T Consensus 1 ~i~l~G~~GsGKstl 15 (154)
T cd00464 1 NIVLIGMMGAGKTTV 15 (154)
T ss_pred CEEEEcCCCCCHHHH
Confidence 478899999999874
No 452
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=40.28 E-value=15 Score=25.15 Aligned_cols=14 Identities=36% Similarity=0.449 Sum_probs=11.6
Q ss_pred EEEEeecCCCcccc
Q psy11948 43 IVGAAETGSGKTLA 56 (167)
Q Consensus 43 ~i~~a~tgsGKt~~ 56 (167)
+++++++|||||..
T Consensus 2 I~i~G~~GsGKst~ 15 (147)
T cd02020 2 IAIDGPAGSGKSTV 15 (147)
T ss_pred EEEECCCCCCHHHH
Confidence 46788999999973
No 453
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=40.11 E-value=26 Score=31.53 Aligned_cols=55 Identities=18% Similarity=0.216 Sum_probs=32.1
Q ss_pred cccCCC-CHHHHHHHHHCCCC--CCchHHHhHHHHHHcc--CCcEEEEeecCCCcccccc
Q psy11948 4 WVKFNI-PETIIRALYQKGFK--TPTKIQSMVMPSALLA--RKDIVGAAETGSGKTLAFG 58 (167)
Q Consensus 4 f~~l~l-~~~l~~~l~~~g~~--~pt~iQ~~~ip~~l~~--~~d~i~~a~tgsGKt~~~~ 58 (167)
|..+++ +++.++..+..... +...+-..|...+... .+.+|+++.+|+|||.+--
T Consensus 51 y~~l~ly~~~~~~~y~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K 110 (677)
T cd01383 51 FKEVPLYGNDYIEAYRKKSNDSPHVYAIADTAYNEMMRDEVNQSIIISGESGAGKTETAK 110 (677)
T ss_pred CcCCCCCCHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEecCCCCCcchHHH
Confidence 445553 45555554432222 2223445566555542 3579999999999998743
No 454
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=40.10 E-value=15 Score=30.44 Aligned_cols=16 Identities=38% Similarity=0.520 Sum_probs=14.2
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
+.+++.+++|+|||+.
T Consensus 166 ~gvLL~GppGtGKT~l 181 (389)
T PRK03992 166 KGVLLYGPPGTGKTLL 181 (389)
T ss_pred CceEEECCCCCChHHH
Confidence 6799999999999974
No 455
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=40.10 E-value=14 Score=31.00 Aligned_cols=17 Identities=35% Similarity=0.419 Sum_probs=15.1
Q ss_pred CcEEEEeecCCCccccc
Q psy11948 41 KDIVGAAETGSGKTLAF 57 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~ 57 (167)
+-+.+.+|||.|||.+.
T Consensus 204 ~vi~LVGPTGVGKTTTl 220 (407)
T COG1419 204 RVIALVGPTGVGKTTTL 220 (407)
T ss_pred cEEEEECCCCCcHHHHH
Confidence 78889999999999863
No 456
>PLN03188 kinesin-12 family protein; Provisional
Probab=40.08 E-value=18 Score=34.60 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=17.2
Q ss_pred HHHccC-CcEEEEeecCCCcccccc
Q psy11948 35 SALLAR-KDIVGAAETGSGKTLAFG 58 (167)
Q Consensus 35 ~~l~~~-~d~i~~a~tgsGKt~~~~ 58 (167)
.++.|. ..|++-+.||||||.+.+
T Consensus 160 svLdGyNaTIFAYGQTGSGKTYTM~ 184 (1320)
T PLN03188 160 NCLAGFNSSVFAYGQTGSGKTYTMW 184 (1320)
T ss_pred HHhcCCcceeecCCCCCCCCCEeeC
Confidence 345552 246778889999998875
No 457
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=40.04 E-value=15 Score=28.38 Aligned_cols=15 Identities=27% Similarity=0.352 Sum_probs=13.4
Q ss_pred CcEEEEeecCCCccc
Q psy11948 41 KDIVGAAETGSGKTL 55 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~ 55 (167)
.-+.+.+++|||||.
T Consensus 32 e~vaI~GpSGSGKST 46 (226)
T COG1136 32 EFVAIVGPSGSGKST 46 (226)
T ss_pred CEEEEECCCCCCHHH
Confidence 678899999999987
No 458
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=40.03 E-value=13 Score=33.60 Aligned_cols=16 Identities=38% Similarity=0.520 Sum_probs=14.4
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
+.+++.+++|+|||..
T Consensus 213 ~giLL~GppGtGKT~l 228 (733)
T TIGR01243 213 KGVLLYGPPGTGKTLL 228 (733)
T ss_pred ceEEEECCCCCChHHH
Confidence 6799999999999964
No 459
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=39.91 E-value=14 Score=31.04 Aligned_cols=16 Identities=50% Similarity=0.611 Sum_probs=14.1
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
..+++.++||+|||..
T Consensus 117 ~~iLL~GP~GsGKT~l 132 (413)
T TIGR00382 117 SNILLIGPTGSGKTLL 132 (413)
T ss_pred ceEEEECCCCcCHHHH
Confidence 4699999999999975
No 460
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=39.72 E-value=59 Score=31.80 Aligned_cols=55 Identities=22% Similarity=0.271 Sum_probs=40.0
Q ss_pred CccccCCC-CHHHHHHHHHCCCCCCch----HHHhHHHHHHcc--CCcEEEEeecCCCcccc
Q psy11948 2 AEWVKFNI-PETIIRALYQKGFKTPTK----IQSMVMPSALLA--RKDIVGAAETGSGKTLA 56 (167)
Q Consensus 2 ~~f~~l~l-~~~l~~~l~~~g~~~pt~----iQ~~~ip~~l~~--~~d~i~~a~tgsGKt~~ 56 (167)
.-|.+|++ ..++++........+.-| |-..|...+++. .+.||+++.+|.|||.+
T Consensus 107 NPy~~L~iYt~d~i~~Y~~K~r~el~PHvfAIAe~aY~~lls~~eNQtIiISGESGAGKTe~ 168 (1463)
T COG5022 107 NPYRDLGIYTDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTIIISGESGAGKTEN 168 (1463)
T ss_pred cCcccCCCccHHHHHHhccCccccCCchHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHH
Confidence 34778884 788888887665444444 666677666654 35799999999999987
No 461
>PRK08356 hypothetical protein; Provisional
Probab=39.56 E-value=14 Score=27.20 Aligned_cols=16 Identities=19% Similarity=0.111 Sum_probs=13.0
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-++++++.||||+..
T Consensus 6 ~~i~~~G~~gsGK~t~ 21 (195)
T PRK08356 6 MIVGVVGKIAAGKTTV 21 (195)
T ss_pred EEEEEECCCCCCHHHH
Confidence 3477899999999873
No 462
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=39.45 E-value=53 Score=29.44 Aligned_cols=55 Identities=22% Similarity=0.235 Sum_probs=30.9
Q ss_pred ccccCCC-CHHHHHHHHHCCCC--CCc--hHHHhHHHHHHc--cCCcEEEEeecCCCccccc
Q psy11948 3 EWVKFNI-PETIIRALYQKGFK--TPT--KIQSMVMPSALL--ARKDIVGAAETGSGKTLAF 57 (167)
Q Consensus 3 ~f~~l~l-~~~l~~~l~~~g~~--~pt--~iQ~~~ip~~l~--~~~d~i~~a~tgsGKt~~~ 57 (167)
-|..+++ +++.++........ .|- .+-..|...++. ....+++++.+|+|||.+-
T Consensus 42 Pyk~l~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESGsGKTet~ 103 (653)
T cd01379 42 PFQQLGLYTTQHSRLYTGQKRSSNPPHIFAIADAAYQSLVTYNQDQCIVISGESGSGKTESA 103 (653)
T ss_pred CCCCCCCCCHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 3555664 45555554432222 222 233344444442 2367999999999999874
No 463
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=39.34 E-value=15 Score=29.63 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=14.1
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
..+++.++.|+|||..
T Consensus 41 ~~i~I~G~~GtGKT~l 56 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAV 56 (365)
T ss_pred CcEEEECCCCCCHHHH
Confidence 5799999999999964
No 464
>PRK06835 DNA replication protein DnaC; Validated
Probab=39.33 E-value=26 Score=28.51 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=14.9
Q ss_pred cCCcEEEEeecCCCccc
Q psy11948 39 ARKDIVGAAETGSGKTL 55 (167)
Q Consensus 39 ~~~d~i~~a~tgsGKt~ 55 (167)
.+..+++.+++|+|||.
T Consensus 182 ~~~~Lll~G~~GtGKTh 198 (329)
T PRK06835 182 NNENLLFYGNTGTGKTF 198 (329)
T ss_pred cCCcEEEECCCCCcHHH
Confidence 34789999999999996
No 465
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=39.23 E-value=17 Score=27.38 Aligned_cols=16 Identities=31% Similarity=0.364 Sum_probs=14.2
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+++.+++|+|||.-
T Consensus 20 s~~li~G~~GsGKT~l 35 (226)
T PF06745_consen 20 SVVLISGPPGSGKTTL 35 (226)
T ss_dssp SEEEEEESTTSSHHHH
T ss_pred cEEEEEeCCCCCcHHH
Confidence 6789999999999973
No 466
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=39.23 E-value=15 Score=26.48 Aligned_cols=14 Identities=29% Similarity=0.347 Sum_probs=12.0
Q ss_pred EEEEeecCCCcccc
Q psy11948 43 IVGAAETGSGKTLA 56 (167)
Q Consensus 43 ~i~~a~tgsGKt~~ 56 (167)
+++.++.|||||..
T Consensus 2 i~i~G~pGsGKst~ 15 (183)
T TIGR01359 2 VFVLGGPGSGKGTQ 15 (183)
T ss_pred EEEECCCCCCHHHH
Confidence 57889999999984
No 467
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=39.13 E-value=14 Score=30.32 Aligned_cols=18 Identities=39% Similarity=0.460 Sum_probs=15.6
Q ss_pred ccccceeeeecccCccce
Q psy11948 80 SARKDIVGAAETGSGKTL 97 (167)
Q Consensus 80 ~~~~d~~~~a~tgsgkt~ 97 (167)
..+.++++..+||+|||.
T Consensus 160 ~~~~nilI~G~tGSGKTT 177 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTT 177 (344)
T ss_pred HcCCeEEEECCCCccHHH
Confidence 457889999999999983
No 468
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=39.05 E-value=25 Score=31.84 Aligned_cols=54 Identities=19% Similarity=0.252 Sum_probs=32.5
Q ss_pred cccCC-C-CHHHHHHHHHCCCCCC----chHHHhHHHHHHcc--CCcEEEEeecCCCccccc
Q psy11948 4 WVKFN-I-PETIIRALYQKGFKTP----TKIQSMVMPSALLA--RKDIVGAAETGSGKTLAF 57 (167)
Q Consensus 4 f~~l~-l-~~~l~~~l~~~g~~~p----t~iQ~~~ip~~l~~--~~d~i~~a~tgsGKt~~~ 57 (167)
|..++ + ++..++..+......+ ..+-..|+..+... ...+|+.+.+|+|||.+.
T Consensus 47 y~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 47 YFDIPKLYSSDTIKKYQGKSLGTLPPHVFAIADKAYRDMKVLKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred CCcccccCCHHHHHHhhCCCcCcCCCcHHHHHHHHHHHHHhcCCCCeEEEecCCCCChhHHH
Confidence 44443 2 5666665544322222 23555666665542 357999999999999874
No 469
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=39.01 E-value=16 Score=26.55 Aligned_cols=16 Identities=38% Similarity=0.505 Sum_probs=13.9
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
+-+++++++|+||+..
T Consensus 3 r~ivl~Gpsg~GK~~l 18 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTL 18 (183)
T ss_dssp SEEEEESSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 6789999999999863
No 470
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=38.96 E-value=25 Score=24.69 Aligned_cols=19 Identities=26% Similarity=0.258 Sum_probs=14.7
Q ss_pred HccCCcEEEEeecCCCccc
Q psy11948 37 LLARKDIVGAAETGSGKTL 55 (167)
Q Consensus 37 l~~~~d~i~~a~tgsGKt~ 55 (167)
+..+.-+++.+..|+|||.
T Consensus 19 l~~~~~i~l~G~lGaGKTt 37 (133)
T TIGR00150 19 LDFGTVVLLKGDLGAGKTT 37 (133)
T ss_pred CCCCCEEEEEcCCCCCHHH
Confidence 3443667799999999986
No 471
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=38.88 E-value=15 Score=30.56 Aligned_cols=25 Identities=36% Similarity=0.512 Sum_probs=19.0
Q ss_pred CchHHHhHHHHHHccCCcEEEEeecCCCccc
Q psy11948 25 PTKIQSMVMPSALLARKDIVGAAETGSGKTL 55 (167)
Q Consensus 25 pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~ 55 (167)
+-+.+.+..| ++++..+|||.|||-
T Consensus 41 ~~~lr~EV~P------KNILMIGpTGVGKTE 65 (444)
T COG1220 41 EEELRDEVTP------KNILMIGPTGVGKTE 65 (444)
T ss_pred CHHHhhccCc------cceEEECCCCCcHHH
Confidence 3344555555 799999999999996
No 472
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=38.87 E-value=17 Score=27.14 Aligned_cols=16 Identities=31% Similarity=0.167 Sum_probs=13.1
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-.++.+++|+|||..
T Consensus 25 ~~~~i~G~NGsGKS~i 40 (220)
T PF02463_consen 25 GLNVIVGPNGSGKSNI 40 (220)
T ss_dssp SEEEEEESTTSSHHHH
T ss_pred CCEEEEcCCCCCHHHH
Confidence 4567899999999963
No 473
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=38.72 E-value=9.7 Score=34.43 Aligned_cols=25 Identities=40% Similarity=0.174 Sum_probs=21.9
Q ss_pred ceeeeecccCccceeeecchhhhhh
Q psy11948 84 DIVGAAETGSGKTLAFGIPILTGIV 108 (167)
Q Consensus 84 d~~~~a~tgsgkt~~~~~p~i~~~~ 108 (167)
.++..||||.|||.+.+.+......
T Consensus 216 ~~vl~aPTG~GKT~asl~~a~~~~~ 240 (733)
T COG1203 216 LVVLEAPTGYGKTEASLILALALLD 240 (733)
T ss_pred cEEEEeCCCCChHHHHHHHHHHHhh
Confidence 7888999999999999998876664
No 474
>PRK05541 adenylylsulfate kinase; Provisional
Probab=38.71 E-value=15 Score=26.37 Aligned_cols=16 Identities=38% Similarity=0.206 Sum_probs=13.8
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+++++..|||||..
T Consensus 8 ~~I~i~G~~GsGKst~ 23 (176)
T PRK05541 8 YVIWITGLAGSGKTTI 23 (176)
T ss_pred CEEEEEcCCCCCHHHH
Confidence 6788999999999864
No 475
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=38.38 E-value=16 Score=29.91 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=14.2
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
..+++.++.|+|||..
T Consensus 56 ~~~lI~G~~GtGKT~l 71 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT 71 (394)
T ss_pred CeEEEECCCCCCHHHH
Confidence 5699999999999974
No 476
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=38.27 E-value=17 Score=32.34 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=13.2
Q ss_pred cceeeeecccCcccee
Q psy11948 83 KDIVGAAETGSGKTLA 98 (167)
Q Consensus 83 ~d~~~~a~tgsgkt~~ 98 (167)
..+++..+.|+|||-+
T Consensus 174 ~~~lI~GpPGTGKT~t 189 (637)
T TIGR00376 174 DLFLIHGPPGTGKTRT 189 (637)
T ss_pred CeEEEEcCCCCCHHHH
Confidence 4578899999999944
No 477
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=38.14 E-value=34 Score=28.71 Aligned_cols=48 Identities=23% Similarity=0.232 Sum_probs=35.9
Q ss_pred CCCCCCchHHHhHHHHHHccCCcEE-EEeecCCCcccccccchhhhhhc
Q psy11948 20 KGFKTPTKIQSMVMPSALLARKDIV-GAAETGSGKTLAFGIPILTGIVN 67 (167)
Q Consensus 20 ~g~~~pt~iQ~~~ip~~l~~~~d~i-~~a~tgsGKt~~~~lp~l~~~~~ 67 (167)
.|+..-+--|..|+..++....+++ +.+.-|||||+-.+-.-+.+++.
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e 272 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLE 272 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHH
Confidence 3676667789999998887656644 67888999998777666666654
No 478
>KOG0242|consensus
Probab=37.97 E-value=28 Score=31.30 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=18.7
Q ss_pred HHHHccC-CcEEEEeecCCCcccccc
Q psy11948 34 PSALLAR-KDIVGAAETGSGKTLAFG 58 (167)
Q Consensus 34 p~~l~~~-~d~i~~a~tgsGKt~~~~ 58 (167)
..++.|. ..|++-+.||||||.+..
T Consensus 80 ~~~l~G~N~TVFAYG~TgSGKTyTM~ 105 (675)
T KOG0242|consen 80 LSVLEGFNATVFAYGQTGSGKTYTMS 105 (675)
T ss_pred HHHhcCcccceeeecCCCCCCceEEe
Confidence 3455552 358899999999999865
No 479
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=37.77 E-value=16 Score=26.46 Aligned_cols=14 Identities=36% Similarity=0.389 Sum_probs=12.0
Q ss_pred EEEEeecCCCcccc
Q psy11948 43 IVGAAETGSGKTLA 56 (167)
Q Consensus 43 ~i~~a~tgsGKt~~ 56 (167)
+++.++.|||||..
T Consensus 2 I~i~G~pGsGKst~ 15 (194)
T cd01428 2 ILLLGPPGSGKGTQ 15 (194)
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999853
No 480
>PRK14532 adenylate kinase; Provisional
Probab=37.65 E-value=17 Score=26.43 Aligned_cols=15 Identities=13% Similarity=0.231 Sum_probs=12.8
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
.+++.++.|||||..
T Consensus 2 ~i~~~G~pGsGKsT~ 16 (188)
T PRK14532 2 NLILFGPPAAGKGTQ 16 (188)
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999864
No 481
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=37.64 E-value=16 Score=29.74 Aligned_cols=17 Identities=35% Similarity=0.550 Sum_probs=15.2
Q ss_pred cccceeeeecccCccce
Q psy11948 81 ARKDIVGAAETGSGKTL 97 (167)
Q Consensus 81 ~~~d~~~~a~tgsgkt~ 97 (167)
.+++++++.+||+|||.
T Consensus 159 ~~~nili~G~tgSGKTT 175 (332)
T PRK13900 159 SKKNIIISGGTSTGKTT 175 (332)
T ss_pred cCCcEEEECCCCCCHHH
Confidence 57899999999999984
No 482
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=37.27 E-value=17 Score=29.67 Aligned_cols=16 Identities=38% Similarity=0.520 Sum_probs=14.0
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
+.+++.+++|+|||+.
T Consensus 157 ~gvLL~GppGtGKT~l 172 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLL 172 (364)
T ss_pred ceEEEECCCCCCHHHH
Confidence 5699999999999963
No 483
>PLN02796 D-glycerate 3-kinase
Probab=37.27 E-value=38 Score=27.93 Aligned_cols=14 Identities=43% Similarity=0.375 Sum_probs=12.1
Q ss_pred EEEEeecCCCcccc
Q psy11948 43 IVGAAETGSGKTLA 56 (167)
Q Consensus 43 ~i~~a~tgsGKt~~ 56 (167)
+.+.+++|||||..
T Consensus 103 IGI~G~sGSGKSTL 116 (347)
T PLN02796 103 IGISAPQGCGKTTL 116 (347)
T ss_pred EEEECCCCCcHHHH
Confidence 67889999999974
No 484
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=37.25 E-value=16 Score=30.19 Aligned_cols=15 Identities=40% Similarity=0.554 Sum_probs=13.4
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
++++-++||+|||..
T Consensus 44 n~~iyG~~GTGKT~~ 58 (366)
T COG1474 44 NIIIYGPTGTGKTAT 58 (366)
T ss_pred cEEEECCCCCCHhHH
Confidence 589999999999975
No 485
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=37.15 E-value=23 Score=29.98 Aligned_cols=26 Identities=27% Similarity=0.540 Sum_probs=20.1
Q ss_pred CCcEEEEeecCCCcccccccchhhhhh
Q psy11948 40 RKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 40 ~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
++.+++.+..|+|||+ |.+-++..+.
T Consensus 10 G~TLLIKG~PGTGKTt-faLelL~~l~ 35 (484)
T PF07088_consen 10 GQTLLIKGEPGTGKTT-FALELLNSLK 35 (484)
T ss_pred CcEEEEecCCCCCcee-eehhhHHHHh
Confidence 4889999999999997 5555555554
No 486
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=36.87 E-value=17 Score=27.28 Aligned_cols=14 Identities=43% Similarity=0.527 Sum_probs=12.3
Q ss_pred cEEEEeecCCCccc
Q psy11948 42 DIVGAAETGSGKTL 55 (167)
Q Consensus 42 d~i~~a~tgsGKt~ 55 (167)
.|++.+.||+||+.
T Consensus 2 ~IlllG~tGsGKSs 15 (212)
T PF04548_consen 2 RILLLGKTGSGKSS 15 (212)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47899999999985
No 487
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=36.85 E-value=15 Score=33.99 Aligned_cols=15 Identities=20% Similarity=0.251 Sum_probs=12.3
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
=.+++++||+|||.-
T Consensus 27 i~lI~G~nGsGKSSI 41 (908)
T COG0419 27 IFLIVGPNGAGKSSI 41 (908)
T ss_pred eEEEECCCCCcHHHH
Confidence 456799999999973
No 488
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=36.82 E-value=30 Score=25.12 Aligned_cols=17 Identities=35% Similarity=0.493 Sum_probs=14.0
Q ss_pred CCcEEEEeecCCCcccc
Q psy11948 40 RKDIVGAAETGSGKTLA 56 (167)
Q Consensus 40 ~~d~i~~a~tgsGKt~~ 56 (167)
...|++.+.+|+||++.
T Consensus 22 ~~pVlI~GE~GtGK~~l 38 (168)
T PF00158_consen 22 DLPVLITGETGTGKELL 38 (168)
T ss_dssp TS-EEEECSTTSSHHHH
T ss_pred CCCEEEEcCCCCcHHHH
Confidence 37899999999999873
No 489
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=36.72 E-value=19 Score=30.06 Aligned_cols=16 Identities=38% Similarity=0.509 Sum_probs=12.6
Q ss_pred CCcEEEEeecCCCccc
Q psy11948 40 RKDIVGAAETGSGKTL 55 (167)
Q Consensus 40 ~~d~i~~a~tgsGKt~ 55 (167)
++-+++.+++|+|||.
T Consensus 50 Gr~iLiaGppGtGKTA 65 (398)
T PF06068_consen 50 GRAILIAGPPGTGKTA 65 (398)
T ss_dssp T-EEEEEE-TTSSHHH
T ss_pred CcEEEEeCCCCCCchH
Confidence 3899999999999985
No 490
>KOG0742|consensus
Probab=36.45 E-value=17 Score=31.05 Aligned_cols=47 Identities=13% Similarity=0.162 Sum_probs=28.7
Q ss_pred cccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccc
Q psy11948 4 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 4 f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
|.+.-||+.|-+.+.+..+..-..--.+ .. .++++.-+|.|+|||+.
T Consensus 354 l~~ViL~psLe~Rie~lA~aTaNTK~h~---ap---fRNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 354 LEGVILHPSLEKRIEDLAIATANTKKHQ---AP---FRNILFYGPPGTGKTMF 400 (630)
T ss_pred cCCeecCHHHHHHHHHHHHHhccccccc---ch---hhheeeeCCCCCCchHH
Confidence 3444477777777776543222111111 11 27899999999999985
No 491
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=36.37 E-value=16 Score=24.68 Aligned_cols=19 Identities=21% Similarity=0.139 Sum_probs=15.1
Q ss_pred CcEEEEeecCCCccccccc
Q psy11948 41 KDIVGAAETGSGKTLAFGI 59 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~~l 59 (167)
.-+.+.+++|+|||....+
T Consensus 16 e~v~I~GpSGsGKSTLl~~ 34 (107)
T cd00820 16 VGVLITGDSGIGKTELALE 34 (107)
T ss_pred EEEEEEcCCCCCHHHHHHH
Confidence 5678999999999985443
No 492
>KOG1803|consensus
Probab=36.35 E-value=24 Score=31.24 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=16.0
Q ss_pred cceeeeecccCccceeeecchhhhh
Q psy11948 83 KDIVGAAETGSGKTLAFGIPILTGI 107 (167)
Q Consensus 83 ~d~~~~a~tgsgkt~~~~~p~i~~~ 107 (167)
.-.++..|.|+|||-+... +|..+
T Consensus 202 ~l~~I~GPPGTGKT~TlvE-iI~ql 225 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTRTLVE-IISQL 225 (649)
T ss_pred CceEeeCCCCCCceeeHHH-HHHHH
Confidence 3346789999999976443 34333
No 493
>KOG0744|consensus
Probab=36.25 E-value=4.3 Score=33.33 Aligned_cols=15 Identities=33% Similarity=0.395 Sum_probs=13.0
Q ss_pred CcEEEEeecCCCccc
Q psy11948 41 KDIVGAAETGSGKTL 55 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~ 55 (167)
+=+++++|.|+|||.
T Consensus 178 RliLlhGPPGTGKTS 192 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTS 192 (423)
T ss_pred eEEEEeCCCCCChhH
Confidence 557899999999995
No 494
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=36.16 E-value=19 Score=27.26 Aligned_cols=16 Identities=38% Similarity=0.256 Sum_probs=13.7
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+++.+++|+|||..
T Consensus 14 ~l~lI~G~~G~GKT~~ 29 (242)
T cd00984 14 DLIIIAARPSMGKTAF 29 (242)
T ss_pred eEEEEEeCCCCCHHHH
Confidence 5678899999999963
No 495
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=36.10 E-value=21 Score=32.89 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=17.7
Q ss_pred CcEEEEeecCCCcccccccchhh
Q psy11948 41 KDIVGAAETGSGKTLAFGIPILT 63 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~~lp~l~ 63 (167)
.++=+...||+|||.+|+-.+..
T Consensus 75 lNiDI~METGTGKTy~Ylrtmfe 97 (985)
T COG3587 75 LNIDILMETGTGKTYTYLRTMFE 97 (985)
T ss_pred ceeeEEEecCCCceeeHHHHHHH
Confidence 45667889999999999865543
No 496
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=36.10 E-value=20 Score=21.29 Aligned_cols=16 Identities=19% Similarity=0.495 Sum_probs=6.5
Q ss_pred CCCHHHHHHHHHCCCC
Q psy11948 8 NIPETIIRALYQKGFK 23 (167)
Q Consensus 8 ~l~~~l~~~l~~~g~~ 23 (167)
|+++.+++.+..+||.
T Consensus 7 Gi~~~lVd~F~~mGF~ 22 (55)
T PF09288_consen 7 GIDKDLVDQFENMGFE 22 (55)
T ss_dssp --SHHHHHHHHHHT--
T ss_pred CCCHHHHHHHHHcCCc
Confidence 4555555555555553
No 497
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=35.90 E-value=21 Score=24.24 Aligned_cols=15 Identities=33% Similarity=0.279 Sum_probs=12.7
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
++.+.++.|+|||..
T Consensus 1 ~i~i~G~~~~GKssl 15 (159)
T cd04159 1 EITLVGLQNSGKTTL 15 (159)
T ss_pred CEEEEcCCCCCHHHH
Confidence 578899999999963
No 498
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=35.89 E-value=18 Score=30.53 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=14.3
Q ss_pred CcEEEEeecCCCccccc
Q psy11948 41 KDIVGAAETGSGKTLAF 57 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~ 57 (167)
+-+++.+++|+|||...
T Consensus 222 ~~i~~vGptGvGKTTt~ 238 (424)
T PRK05703 222 GVVALVGPTGVGKTTTL 238 (424)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 56889999999999753
No 499
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=35.83 E-value=19 Score=27.79 Aligned_cols=14 Identities=36% Similarity=0.411 Sum_probs=10.5
Q ss_pred EEEEeecCCCcccc
Q psy11948 43 IVGAAETGSGKTLA 56 (167)
Q Consensus 43 ~i~~a~tgsGKt~~ 56 (167)
.++.++||+|||-.
T Consensus 4 ~~i~GpT~tGKt~~ 17 (233)
T PF01745_consen 4 YLIVGPTGTGKTAL 17 (233)
T ss_dssp EEEE-STTSSHHHH
T ss_pred EEEECCCCCChhHH
Confidence 35789999999964
No 500
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=35.83 E-value=18 Score=29.49 Aligned_cols=19 Identities=47% Similarity=0.548 Sum_probs=15.5
Q ss_pred ccccceeeeecccCcccee
Q psy11948 80 SARKDIVGAAETGSGKTLA 98 (167)
Q Consensus 80 ~~~~d~~~~a~tgsgkt~~ 98 (167)
..+.+++++.+||+|||..
T Consensus 142 ~~~~nilI~G~tGSGKTTl 160 (323)
T PRK13833 142 DSRLNIVISGGTGSGKTTL 160 (323)
T ss_pred HcCCeEEEECCCCCCHHHH
Confidence 3467899999999999843
Done!