Query psy11948
Match_columns 167
No_of_seqs 156 out of 1870
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 23:03:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11948.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11948hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fmo_B ATP-dependent RNA helic 99.8 7.7E-22 2.6E-26 155.9 6.4 66 1-66 91-157 (300)
2 2db3_A ATP-dependent RNA helic 99.8 1.9E-20 6.6E-25 154.4 7.0 66 1-67 55-120 (434)
3 3fe2_A Probable ATP-dependent 99.8 4.4E-20 1.5E-24 141.0 7.5 65 1-66 28-92 (242)
4 1vec_A ATP-dependent RNA helic 99.8 4.2E-20 1.4E-24 137.3 6.7 64 2-66 3-66 (206)
5 1q0u_A Bstdead; DEAD protein, 99.8 2.6E-20 8.8E-25 140.1 5.3 64 2-66 4-67 (219)
6 2oxc_A Probable ATP-dependent 99.8 6.3E-20 2.2E-24 139.2 6.4 64 2-66 24-87 (230)
7 3ber_A Probable ATP-dependent 99.8 6.7E-20 2.3E-24 141.0 6.0 64 2-66 43-106 (249)
8 3bor_A Human initiation factor 99.8 5.1E-20 1.7E-24 140.4 4.4 65 1-66 29-93 (237)
9 2pl3_A Probable ATP-dependent 99.8 1.5E-19 5.1E-24 137.3 6.9 65 1-66 24-88 (236)
10 1qde_A EIF4A, translation init 99.8 1.5E-19 5E-24 136.1 5.8 65 1-66 13-77 (224)
11 1t6n_A Probable ATP-dependent 99.8 2.3E-19 7.7E-24 134.8 6.8 64 2-66 14-77 (220)
12 3iuy_A Probable ATP-dependent 99.8 9E-20 3.1E-24 137.8 4.5 65 1-66 18-83 (228)
13 3dkp_A Probable ATP-dependent 99.8 1.4E-19 4.6E-24 138.2 5.5 65 1-66 24-92 (245)
14 2gxq_A Heat resistant RNA depe 99.8 2.9E-19 1E-23 132.7 6.7 64 2-66 1-64 (207)
15 2i4i_A ATP-dependent RNA helic 99.8 2.5E-19 8.6E-24 145.5 6.1 66 1-67 14-79 (417)
16 1wrb_A DJVLGB; RNA helicase, D 99.8 6.8E-20 2.3E-24 140.6 2.1 66 1-67 22-87 (253)
17 3ly5_A ATP-dependent RNA helic 99.7 8.5E-19 2.9E-23 135.7 5.3 63 3-66 53-117 (262)
18 3fmp_B ATP-dependent RNA helic 99.7 1.1E-18 3.8E-23 144.9 6.2 65 2-66 92-157 (479)
19 3fht_A ATP-dependent RNA helic 99.7 2.1E-18 7.3E-23 139.5 6.6 66 1-66 24-90 (412)
20 2j0s_A ATP-dependent RNA helic 99.7 2.7E-18 9.2E-23 139.4 5.8 63 2-65 37-99 (410)
21 3pey_A ATP-dependent RNA helic 99.7 7E-18 2.4E-22 135.5 7.0 66 1-66 4-70 (395)
22 1s2m_A Putative ATP-dependent 99.7 1.4E-17 4.9E-22 134.6 6.3 64 2-66 21-84 (400)
23 1xti_A Probable ATP-dependent 99.7 1.3E-17 4.4E-22 134.2 5.3 64 2-66 8-71 (391)
24 1fuu_A Yeast initiation factor 99.7 1.3E-17 4.4E-22 134.2 4.1 64 2-66 21-84 (394)
25 3eiq_A Eukaryotic initiation f 99.7 4.1E-17 1.4E-21 132.2 6.4 64 2-66 40-103 (414)
26 1hv8_A Putative ATP-dependent 99.7 5.6E-17 1.9E-21 129.0 5.7 64 2-65 6-69 (367)
27 3sqw_A ATP-dependent RNA helic 99.7 2.9E-17 9.8E-22 139.7 3.7 57 9-66 28-86 (579)
28 3i5x_A ATP-dependent RNA helic 99.6 4.9E-17 1.7E-21 137.4 3.7 59 9-67 79-138 (563)
29 2zj8_A DNA helicase, putative 99.5 3.6E-15 1.2E-19 129.8 4.5 64 2-66 1-65 (720)
30 2va8_A SSO2462, SKI2-type heli 99.5 4.9E-15 1.7E-19 128.7 5.2 64 2-66 8-72 (715)
31 2z0m_A 337AA long hypothetical 99.5 1.4E-14 4.8E-19 114.0 5.8 53 9-62 1-53 (337)
32 1oyw_A RECQ helicase, ATP-depe 99.5 4.2E-15 1.4E-19 125.4 2.5 61 1-62 1-62 (523)
33 2v1x_A ATP-dependent DNA helic 99.5 2.6E-14 9.1E-19 122.1 5.7 57 5-62 24-81 (591)
34 2p6r_A Afuhel308 helicase; pro 99.5 2.8E-15 9.6E-20 130.1 -1.4 64 2-66 1-66 (702)
35 3fho_A ATP-dependent RNA helic 99.4 1.3E-14 4.4E-19 121.8 1.0 63 4-66 121-184 (508)
36 3oiy_A Reverse gyrase helicase 99.4 1E-13 3.4E-18 112.9 2.9 51 11-63 8-59 (414)
37 1tf5_A Preprotein translocase 99.3 3.8E-13 1.3E-17 117.8 3.3 41 19-63 79-119 (844)
38 2whx_A Serine protease/ntpase/ 99.3 4.6E-14 1.6E-18 121.2 -3.7 58 7-66 155-212 (618)
39 1gku_B Reverse gyrase, TOP-RG; 99.3 1.7E-12 5.8E-17 117.3 5.1 59 4-66 32-96 (1054)
40 3l9o_A ATP-dependent RNA helic 99.3 4.2E-13 1.4E-17 121.7 0.2 62 3-65 163-224 (1108)
41 4f92_B U5 small nuclear ribonu 99.3 1.5E-12 5.3E-17 122.0 3.7 58 9-66 911-968 (1724)
42 2ykg_A Probable ATP-dependent 99.3 2E-12 6.8E-17 111.6 3.9 52 14-66 3-54 (696)
43 4ddu_A Reverse gyrase; topoiso 99.2 3.3E-12 1.1E-16 115.8 4.9 44 19-64 74-117 (1104)
44 2jlq_A Serine protease subunit 99.2 6E-13 2.1E-17 110.2 -0.2 44 21-66 1-45 (451)
45 4a2p_A RIG-I, retinoic acid in 99.2 5.7E-12 1.9E-16 105.5 3.9 46 20-66 3-48 (556)
46 3tbk_A RIG-I helicase domain; 99.2 7.1E-12 2.4E-16 104.6 4.0 42 24-66 4-45 (555)
47 2wv9_A Flavivirin protease NS2 99.2 2.4E-13 8.4E-18 117.7 -5.8 50 16-66 202-267 (673)
48 4f92_B U5 small nuclear ribonu 99.2 1.7E-11 5.7E-16 115.2 5.1 47 21-67 76-122 (1724)
49 4a2q_A RIG-I, retinoic acid in 99.1 1.6E-11 5.3E-16 108.1 4.0 47 19-66 243-289 (797)
50 2fsf_A Preprotein translocase 99.1 6.9E-12 2.4E-16 109.8 1.8 41 20-64 71-111 (853)
51 1gm5_A RECG; helicase, replica 99.1 4.3E-11 1.5E-15 105.1 4.8 54 11-65 356-414 (780)
52 3b6e_A Interferon-induced heli 99.1 1.9E-11 6.7E-16 90.4 2.2 47 19-66 28-74 (216)
53 1nkt_A Preprotein translocase 99.1 4.5E-11 1.5E-15 105.2 3.3 42 19-64 107-148 (922)
54 4a2w_A RIG-I, retinoic acid in 99.1 5.4E-11 1.8E-15 106.4 3.9 47 19-66 243-289 (936)
55 2xau_A PRE-mRNA-splicing facto 99.1 8.2E-11 2.8E-15 103.4 4.6 58 2-62 72-129 (773)
56 2ipc_A Preprotein translocase 99.0 5.5E-11 1.9E-15 104.7 2.2 41 19-63 75-115 (997)
57 2xgj_A ATP-dependent RNA helic 99.0 1.8E-10 6.3E-15 103.7 3.7 47 17-65 80-126 (1010)
58 3llm_A ATP-dependent RNA helic 99.0 2.1E-10 7.2E-15 86.9 3.5 45 21-66 58-102 (235)
59 4a4z_A Antiviral helicase SKI2 98.9 5.7E-10 2E-14 100.4 4.4 43 19-63 35-77 (997)
60 4gl2_A Interferon-induced heli 98.9 2.1E-10 7.2E-15 99.0 0.9 43 23-66 6-48 (699)
61 2z83_A Helicase/nucleoside tri 98.9 2.7E-10 9.3E-15 94.5 1.2 33 34-66 15-47 (459)
62 2oca_A DAR protein, ATP-depend 98.9 5.7E-10 2E-14 93.0 3.0 42 22-64 111-152 (510)
63 2eyq_A TRCF, transcription-rep 98.9 2.2E-09 7.5E-14 97.9 6.5 56 7-63 586-647 (1151)
64 1rif_A DAR protein, DNA helica 98.9 7.2E-10 2.5E-14 86.0 2.6 39 24-63 113-151 (282)
65 2fwr_A DNA repair protein RAD2 98.8 3.5E-09 1.2E-13 87.4 4.3 38 24-62 93-130 (472)
66 3crv_A XPD/RAD3 related DNA he 98.7 6.7E-09 2.3E-13 87.9 3.2 41 21-63 1-45 (551)
67 1wp9_A ATP-dependent RNA helic 98.7 8.8E-09 3E-13 83.7 3.4 39 24-64 9-47 (494)
68 3h1t_A Type I site-specific re 98.7 1.3E-08 4.3E-13 86.5 4.2 43 23-66 177-223 (590)
69 2fz4_A DNA repair protein RAD2 98.7 2.1E-08 7.3E-13 76.1 5.0 37 24-61 93-129 (237)
70 2vl7_A XPD; helicase, unknown 98.6 1.1E-08 3.8E-13 86.4 2.5 41 20-62 4-48 (540)
71 4a15_A XPD helicase, ATP-depen 98.6 1.2E-08 4.3E-13 87.5 2.5 42 24-66 3-48 (620)
72 3o8b_A HCV NS3 protease/helica 98.5 3.5E-09 1.2E-13 91.4 -2.9 38 25-62 217-254 (666)
73 2w00_A HSDR, R.ECOR124I; ATP-b 98.3 2.5E-07 8.5E-12 83.5 3.7 35 23-57 270-317 (1038)
74 3rc3_A ATP-dependent RNA helic 98.1 6.1E-07 2.1E-11 77.8 1.8 14 154-167 181-194 (677)
75 1w36_D RECD, exodeoxyribonucle 97.6 8.7E-05 3E-09 63.5 5.7 38 26-64 151-190 (608)
76 3jux_A Protein translocase sub 97.4 0.0001 3.6E-09 64.2 3.5 41 20-64 72-112 (822)
77 3fmo_B ATP-dependent RNA helic 97.3 3.3E-05 1.1E-09 60.3 -0.1 69 60-167 102-177 (300)
78 3fe2_A Probable ATP-dependent 97.3 3.6E-05 1.2E-09 57.9 -0.2 73 61-167 40-117 (242)
79 3iuy_A Probable ATP-dependent 97.3 3.6E-05 1.2E-09 57.2 -0.2 74 61-167 31-109 (228)
80 1z63_A Helicase of the SNF2/RA 97.3 0.00015 5.2E-09 59.9 3.4 35 23-57 36-73 (500)
81 2db3_A ATP-dependent RNA helic 97.2 5.1E-05 1.7E-09 62.1 -0.3 73 61-167 67-144 (434)
82 1yks_A Genome polyprotein [con 97.2 0.0001 3.6E-09 60.5 1.5 31 36-67 5-35 (440)
83 3dmq_A RNA polymerase-associat 97.1 0.00023 7.9E-09 64.0 3.3 39 23-61 152-191 (968)
84 3ly5_A ATP-dependent RNA helic 97.1 5.1E-05 1.7E-09 58.0 -0.9 72 61-167 65-141 (262)
85 3dkp_A Probable ATP-dependent 97.1 7.3E-05 2.5E-09 56.1 -0.3 69 61-167 40-113 (245)
86 2pl3_A Probable ATP-dependent 96.9 0.00011 3.9E-09 54.7 -0.4 65 68-167 44-112 (236)
87 2v6i_A RNA helicase; membrane, 96.9 0.00037 1.3E-08 57.1 2.5 27 41-67 3-29 (431)
88 1wrb_A DJVLGB; RNA helicase, D 96.9 0.00013 4.6E-09 55.0 -0.2 77 61-167 34-115 (253)
89 1vec_A ATP-dependent RNA helic 96.9 0.00016 5.4E-09 52.6 0.1 61 68-167 22-86 (206)
90 2oxc_A Probable ATP-dependent 96.8 0.00015 5.3E-09 54.0 -0.3 68 61-167 35-107 (230)
91 3ber_A Probable ATP-dependent 96.7 0.00021 7.2E-09 54.1 -0.3 61 68-167 62-126 (249)
92 2i4i_A ATP-dependent RNA helic 96.7 0.00022 7.4E-09 57.2 -0.3 79 68-167 34-116 (417)
93 2gxq_A Heat resistant RNA depe 96.7 0.00023 7.7E-09 51.8 -0.3 64 68-167 20-87 (207)
94 3bor_A Human initiation factor 96.7 0.00016 5.6E-09 54.1 -1.3 68 61-167 41-113 (237)
95 1q0u_A Bstdead; DEAD protein, 96.7 0.00017 5.7E-09 53.3 -1.3 61 68-167 23-87 (219)
96 3i5x_A ATP-dependent RNA helic 96.6 0.00029 9.9E-09 59.1 -0.2 71 62-167 84-161 (563)
97 1qde_A EIF4A, translation init 96.6 0.00029 9.9E-09 52.0 -0.3 61 68-167 33-97 (224)
98 3sqw_A ATP-dependent RNA helic 96.6 0.00033 1.1E-08 59.2 -0.3 65 68-167 40-110 (579)
99 1t6n_A Probable ATP-dependent 96.5 0.00035 1.2E-08 51.4 -0.3 68 61-167 25-97 (220)
100 3fmp_B ATP-dependent RNA helic 96.5 0.00039 1.3E-08 57.2 -0.1 69 60-167 102-177 (479)
101 2j0s_A ATP-dependent RNA helic 96.3 0.00063 2.1E-08 54.5 -0.1 69 60-167 47-120 (410)
102 3fht_A ATP-dependent RNA helic 96.1 0.00088 3E-08 53.4 -0.1 69 60-167 35-110 (412)
103 3eiq_A Eukaryotic initiation f 96.0 0.0012 3.9E-08 52.8 -0.1 68 61-167 51-123 (414)
104 3pey_A ATP-dependent RNA helic 95.9 0.0011 3.8E-08 52.3 -0.3 69 60-167 15-90 (395)
105 1s2m_A Putative ATP-dependent 95.7 0.0015 5.2E-08 52.0 -0.3 69 60-167 31-104 (400)
106 1xti_A Probable ATP-dependent 95.7 0.0018 6E-08 51.3 -0.1 61 68-167 27-91 (391)
107 2z0m_A 337AA long hypothetical 95.7 0.0017 5.7E-08 50.3 -0.2 38 68-105 13-54 (337)
108 2jlq_A Serine protease subunit 95.7 0.0032 1.1E-07 51.7 1.4 57 70-167 3-63 (451)
109 1fuu_A Yeast initiation factor 95.4 0.0014 4.8E-08 51.9 -1.5 68 61-167 32-104 (394)
110 3mwy_W Chromo domain-containin 95.4 0.01 3.5E-07 52.2 3.6 34 24-58 236-273 (800)
111 1yks_A Genome polyprotein [con 95.2 0.0037 1.3E-07 51.2 0.4 30 80-109 6-35 (440)
112 2whx_A Serine protease/ntpase/ 95.1 0.0057 1.9E-07 52.4 1.1 57 70-167 170-230 (618)
113 3oiy_A Reverse gyrase helicase 94.9 0.0034 1.2E-07 50.5 -0.9 55 71-167 21-79 (414)
114 1hv8_A Putative ATP-dependent 94.8 0.0041 1.4E-07 48.5 -0.4 60 68-167 25-89 (367)
115 2z83_A Helicase/nucleoside tri 94.7 0.0058 2E-07 50.3 0.2 47 80-167 19-65 (459)
116 1tf5_A Preprotein translocase 94.5 0.0043 1.5E-07 54.8 -1.1 55 68-167 81-139 (844)
117 4a15_A XPD helicase, ATP-depen 94.5 0.0055 1.9E-07 52.5 -0.5 47 80-167 20-66 (620)
118 1z3i_X Similar to RAD54-like; 94.5 0.023 8E-07 48.7 3.4 38 24-61 55-100 (644)
119 2v6i_A RNA helicase; membrane, 94.4 0.0084 2.9E-07 48.9 0.5 27 82-108 2-28 (431)
120 3fho_A ATP-dependent RNA helic 94.4 0.0075 2.6E-07 50.2 0.0 61 68-167 138-204 (508)
121 2p6r_A Afuhel308 helicase; pro 94.0 0.0054 1.9E-07 53.0 -1.5 58 68-167 22-83 (702)
122 3tbk_A RIG-I helicase domain; 94.0 0.0074 2.5E-07 49.8 -0.8 51 80-167 17-67 (555)
123 4a2p_A RIG-I, retinoic acid in 93.8 0.0076 2.6E-07 49.9 -0.9 51 80-167 20-70 (556)
124 2ykg_A Probable ATP-dependent 93.5 0.01 3.5E-07 50.8 -0.7 62 69-167 11-76 (696)
125 1c4o_A DNA nucleotide excision 93.4 0.037 1.3E-06 47.8 2.6 37 20-57 5-45 (664)
126 2va8_A SSO2462, SKI2-type heli 93.4 0.013 4.4E-07 50.6 -0.2 59 68-167 27-90 (715)
127 2zj8_A DNA helicase, putative 93.2 0.013 4.6E-07 50.7 -0.4 59 68-167 20-83 (720)
128 3upu_A ATP-dependent DNA helic 93.0 0.08 2.7E-06 43.4 3.9 39 17-55 18-60 (459)
129 4b3f_X DNA-binding protein smu 93.0 0.079 2.7E-06 45.4 4.0 55 24-92 189-243 (646)
130 2wv9_A Flavivirin protease NS2 92.8 0.021 7.1E-07 49.5 0.2 46 81-167 240-285 (673)
131 2vl7_A XPD; helicase, unknown 92.7 0.019 6.5E-07 48.2 -0.3 26 80-105 24-49 (540)
132 2v1x_A ATP-dependent DNA helic 92.6 0.025 8.5E-07 48.2 0.3 38 68-105 41-82 (591)
133 4a2q_A RIG-I, retinoic acid in 92.4 0.018 6.1E-07 50.5 -0.8 62 69-167 246-311 (797)
134 2fsf_A Preprotein translocase 92.1 0.012 4.1E-07 52.1 -2.2 53 71-167 74-130 (853)
135 1nkt_A Preprotein translocase 92.1 0.018 6.2E-07 51.2 -1.1 71 52-167 86-167 (922)
136 3l9o_A ATP-dependent RNA helic 92.1 0.02 6.8E-07 52.3 -0.9 55 71-167 184-242 (1108)
137 4ddu_A Reverse gyrase; topoiso 91.6 0.025 8.7E-07 51.6 -0.7 55 71-167 78-136 (1104)
138 3b6e_A Interferon-induced heli 91.5 0.02 6.9E-07 41.3 -1.3 52 80-167 46-97 (216)
139 1gku_B Reverse gyrase, TOP-RG; 91.5 0.03 1E-06 50.8 -0.5 56 68-167 55-114 (1054)
140 3lfu_A DNA helicase II; SF1 he 90.9 0.16 5.5E-06 43.1 3.5 33 23-58 8-40 (647)
141 3e1s_A Exodeoxyribonuclease V, 90.7 0.16 5.4E-06 43.1 3.3 32 24-56 189-220 (574)
142 1oyw_A RECQ helicase, ATP-depe 90.6 0.028 9.7E-07 47.0 -1.4 37 68-104 22-62 (523)
143 2gk6_A Regulator of nonsense t 90.5 0.22 7.6E-06 42.5 4.0 34 23-57 179-212 (624)
144 4a2w_A RIG-I, retinoic acid in 90.2 0.041 1.4E-06 49.3 -0.8 62 69-167 246-311 (936)
145 3llm_A ATP-dependent RNA helic 90.1 0.046 1.6E-06 40.5 -0.4 51 80-167 74-124 (235)
146 4gl2_A Interferon-induced heli 89.9 0.052 1.8E-06 46.5 -0.4 52 80-167 20-71 (699)
147 2ipc_A Preprotein translocase 89.6 0.031 1.1E-06 49.9 -2.0 55 68-167 77-135 (997)
148 3crv_A XPD/RAD3 related DNA he 89.1 0.068 2.3E-06 44.9 -0.2 43 80-167 20-62 (551)
149 2wjy_A Regulator of nonsense t 88.4 0.38 1.3E-05 42.4 4.0 34 23-57 355-388 (800)
150 2xzl_A ATP-dependent helicase 88.0 0.34 1.1E-05 42.8 3.4 34 23-57 359-392 (802)
151 2xgj_A ATP-dependent RNA helic 87.9 0.067 2.3E-06 48.4 -1.1 54 72-167 87-144 (1010)
152 3u4q_A ATP-dependent helicase/ 87.6 0.39 1.3E-05 44.3 3.7 37 24-63 10-46 (1232)
153 2oca_A DAR protein, ATP-depend 85.6 0.097 3.3E-06 43.1 -1.2 47 80-167 126-172 (510)
154 4a4z_A Antiviral helicase SKI2 85.6 0.16 5.4E-06 45.9 0.0 46 80-167 52-97 (997)
155 1gm5_A RECG; helicase, replica 85.1 0.15 5.1E-06 44.9 -0.3 64 61-167 357-432 (780)
156 1uaa_A REP helicase, protein ( 84.6 0.51 1.7E-05 40.4 2.7 32 24-58 2-33 (673)
157 1pjr_A PCRA; DNA repair, DNA r 82.8 1.1 3.7E-05 38.9 4.1 33 23-58 10-42 (724)
158 3ec2_A DNA replication protein 82.4 1.1 3.7E-05 31.3 3.3 31 26-56 16-54 (180)
159 3o8b_A HCV NS3 protease/helica 81.0 0.5 1.7E-05 40.8 1.3 43 80-167 230-272 (666)
160 1rif_A DAR protein, DNA helica 78.9 0.32 1.1E-05 36.9 -0.6 46 81-167 127-172 (282)
161 1wp9_A ATP-dependent RNA helic 78.4 0.38 1.3E-05 38.3 -0.3 43 84-167 25-67 (494)
162 3co5_A Putative two-component 78.3 1.6 5.4E-05 29.5 2.9 17 39-55 26-42 (143)
163 2d7d_A Uvrabc system protein B 78.2 1 3.5E-05 38.7 2.4 34 24-57 12-49 (661)
164 2oap_1 GSPE-2, type II secreti 77.6 1.8 6.3E-05 36.0 3.6 40 15-56 237-276 (511)
165 3cf0_A Transitional endoplasmi 74.3 0.78 2.7E-05 35.2 0.5 53 3-56 13-65 (301)
166 3n70_A Transport activator; si 74.0 1.8 6E-05 29.2 2.2 18 39-56 23-40 (145)
167 4b4t_M 26S protease regulatory 73.5 0.68 2.3E-05 37.9 -0.0 51 2-56 178-231 (434)
168 2xau_A PRE-mRNA-splicing facto 72.5 0.68 2.3E-05 40.6 -0.3 35 68-104 90-129 (773)
169 2eyq_A TRCF, transcription-rep 70.6 0.86 2.9E-05 41.8 -0.1 43 83-167 625-667 (1151)
170 3b85_A Phosphate starvation-in 70.2 4.6 0.00016 29.3 3.9 35 22-57 5-39 (208)
171 3h4m_A Proteasome-activating n 68.3 1.1 3.7E-05 33.6 0.1 52 3-56 15-67 (285)
172 2fwr_A DNA repair protein RAD2 67.7 1 3.5E-05 36.5 -0.2 24 81-104 107-130 (472)
173 3rc3_A ATP-dependent RNA helic 67.4 1.6 5.3E-05 37.8 0.9 18 80-97 153-170 (677)
174 2kjq_A DNAA-related protein; s 66.1 3.3 0.00011 28.2 2.3 15 41-55 37-51 (149)
175 1xwi_A SKD1 protein; VPS4B, AA 64.4 7.5 0.00026 30.0 4.2 49 2-56 9-61 (322)
176 2fz4_A DNA repair protein RAD2 64.3 1.4 4.9E-05 32.5 0.1 24 81-104 107-130 (237)
177 1ex7_A Guanylate kinase; subst 64.0 2.4 8.2E-05 30.4 1.2 15 41-55 2-16 (186)
178 2x8a_A Nuclear valosin-contain 63.9 1.1 3.9E-05 33.9 -0.6 50 3-56 8-60 (274)
179 1e9r_A Conjugal transfer prote 62.5 3.1 0.00011 33.4 1.8 25 41-66 54-78 (437)
180 1jbk_A CLPB protein; beta barr 62.2 2.6 9E-05 28.7 1.1 16 41-56 44-59 (195)
181 3vkg_A Dynein heavy chain, cyt 62.2 5.3 0.00018 40.6 3.5 47 11-58 875-924 (3245)
182 3eie_A Vacuolar protein sortin 62.0 9.1 0.00031 29.3 4.3 48 3-56 16-67 (322)
183 1kgd_A CASK, peripheral plasma 61.1 2.5 8.5E-05 29.6 0.9 16 41-56 6-21 (180)
184 1ixz_A ATP-dependent metallopr 60.5 1.2 3.9E-05 33.0 -1.1 49 3-56 14-65 (254)
185 3lw7_A Adenylate kinase relate 59.0 3 0.0001 28.2 0.9 15 42-56 3-17 (179)
186 3nbx_X ATPase RAVA; AAA+ ATPas 58.9 11 0.00039 31.2 4.6 35 21-56 23-57 (500)
187 2w58_A DNAI, primosome compone 58.8 3.2 0.00011 29.3 1.1 16 41-56 55-70 (202)
188 3nwn_A Kinesin-like protein KI 58.7 5.3 0.00018 31.7 2.5 25 34-58 98-123 (359)
189 2bjv_A PSP operon transcriptio 58.5 5.3 0.00018 29.5 2.3 17 40-56 29-45 (265)
190 4b4t_J 26S protease regulatory 57.9 1.9 6.3E-05 35.0 -0.4 50 3-56 146-198 (405)
191 2gza_A Type IV secretion syste 57.8 5.1 0.00017 31.6 2.2 19 38-56 173-191 (361)
192 3bos_A Putative DNA replicatio 57.8 3.3 0.00011 29.6 1.1 17 40-56 52-68 (242)
193 1u0j_A DNA replication protein 57.3 13 0.00045 28.2 4.4 45 11-58 73-122 (267)
194 3h1t_A Type I site-specific re 57.2 2 6.8E-05 36.0 -0.3 53 82-167 198-250 (590)
195 4b4t_L 26S protease subunit RP 57.0 1.5 5.2E-05 35.9 -1.0 50 3-56 179-231 (437)
196 2eyu_A Twitching motility prot 56.9 3.4 0.00012 31.1 1.0 17 41-57 26-42 (261)
197 2p65_A Hypothetical protein PF 56.6 2.7 9.4E-05 28.7 0.4 16 40-55 43-58 (187)
198 1lvg_A Guanylate kinase, GMP k 56.5 3.9 0.00013 29.1 1.2 17 41-57 5-21 (198)
199 4b4t_H 26S protease regulatory 56.4 3.6 0.00012 34.0 1.1 50 3-56 207-259 (467)
200 1iy2_A ATP-dependent metallopr 56.0 1.5 5E-05 33.0 -1.2 49 3-56 38-89 (278)
201 3tau_A Guanylate kinase, GMP k 56.0 3.6 0.00012 29.5 0.9 16 41-56 9-24 (208)
202 2pt7_A CAG-ALFA; ATPase, prote 55.6 5.4 0.00018 31.1 2.0 18 39-56 170-187 (330)
203 3hws_A ATP-dependent CLP prote 55.6 13 0.00043 28.9 4.2 16 41-56 52-67 (363)
204 2ze6_A Isopentenyl transferase 55.6 3.6 0.00012 30.6 1.0 14 43-56 4-17 (253)
205 3gbj_A KIF13B protein; kinesin 55.0 6.1 0.00021 31.3 2.2 24 34-58 86-111 (354)
206 4gp7_A Metallophosphoesterase; 54.8 3.9 0.00013 28.4 0.9 18 41-58 10-27 (171)
207 3syl_A Protein CBBX; photosynt 54.7 4.4 0.00015 30.5 1.3 16 41-56 68-83 (309)
208 1qhx_A CPT, protein (chloramph 54.6 3.9 0.00013 28.0 1.0 16 41-56 4-19 (178)
209 1bg2_A Kinesin; motor protein, 54.6 6.5 0.00022 30.8 2.3 24 34-58 71-96 (325)
210 3vkw_A Replicase large subunit 54.5 3.7 0.00013 33.7 0.9 13 154-166 186-198 (446)
211 2w00_A HSDR, R.ECOR124I; ATP-b 54.4 2.9 0.0001 38.0 0.3 46 82-167 300-345 (1038)
212 3foz_A TRNA delta(2)-isopenten 54.2 4.1 0.00014 31.9 1.1 15 42-56 12-26 (316)
213 3a8t_A Adenylate isopentenyltr 54.1 4 0.00014 32.2 1.0 15 42-56 42-56 (339)
214 1ry6_A Internal kinesin; kines 54.1 5.3 0.00018 31.8 1.7 22 37-58 80-103 (360)
215 1t5c_A CENP-E protein, centrom 54.1 7.1 0.00024 30.9 2.5 25 34-58 71-96 (349)
216 3cob_A Kinesin heavy chain-lik 54.0 6.1 0.00021 31.6 2.1 25 33-58 72-98 (369)
217 1x88_A Kinesin-like protein KI 53.8 6.8 0.00023 31.1 2.3 23 35-58 83-107 (359)
218 3exa_A TRNA delta(2)-isopenten 53.7 4.2 0.00014 31.9 1.1 15 42-56 5-19 (322)
219 3b6u_A Kinesin-like protein KI 53.7 7.2 0.00025 31.2 2.5 24 35-58 96-120 (372)
220 2qz4_A Paraplegin; AAA+, SPG7, 53.7 4.3 0.00015 29.7 1.1 51 2-56 3-55 (262)
221 2nr8_A Kinesin-like protein KI 53.6 7.3 0.00025 31.0 2.5 24 34-58 97-122 (358)
222 3tr0_A Guanylate kinase, GMP k 53.2 4.2 0.00014 28.6 0.9 16 41-56 8-23 (205)
223 3jvv_A Twitching mobility prot 53.2 4 0.00014 32.3 0.9 17 41-57 124-140 (356)
224 3trf_A Shikimate kinase, SK; a 53.0 4.6 0.00016 27.9 1.1 16 41-56 6-21 (185)
225 1zp6_A Hypothetical protein AT 53.0 4.6 0.00016 28.0 1.1 16 41-56 10-25 (191)
226 1ly1_A Polynucleotide kinase; 52.9 4.4 0.00015 27.7 1.0 15 42-56 4-18 (181)
227 3d8b_A Fidgetin-like protein 1 52.8 16 0.00053 28.5 4.3 17 40-56 117-133 (357)
228 2zfi_A Kinesin-like protein KI 52.6 7.2 0.00024 31.1 2.3 24 35-58 84-108 (366)
229 3dc4_A Kinesin-like protein NO 52.5 6.6 0.00023 31.0 2.0 23 35-57 89-112 (344)
230 2h58_A Kinesin-like protein KI 51.9 7.3 0.00025 30.6 2.2 26 32-58 72-99 (330)
231 3cpe_A Terminase, DNA packagin 51.9 16 0.00053 30.8 4.4 35 24-59 163-197 (592)
232 2wbe_C Bipolar kinesin KRP-130 51.8 7.2 0.00025 31.2 2.2 23 35-58 95-119 (373)
233 2vvg_A Kinesin-2; motor protei 51.7 7.6 0.00026 30.7 2.3 24 35-58 84-108 (350)
234 1goj_A Kinesin, kinesin heavy 51.6 7 0.00024 31.0 2.1 23 36-58 76-99 (355)
235 2y65_A Kinesin, kinesin heavy 51.5 7.6 0.00026 30.9 2.3 24 35-58 79-103 (365)
236 1lv7_A FTSH; alpha/beta domain 51.5 4.9 0.00017 29.5 1.1 51 2-56 9-61 (257)
237 4akg_A Glutathione S-transfera 51.5 11 0.00037 37.8 3.7 47 11-58 892-941 (2695)
238 3kb2_A SPBC2 prophage-derived 51.5 4.6 0.00016 27.3 0.9 15 42-56 3-17 (173)
239 4etp_A Kinesin-like protein KA 51.4 6.2 0.00021 31.9 1.8 26 32-58 132-159 (403)
240 3u06_A Protein claret segregat 51.3 6.7 0.00023 31.8 1.9 26 32-58 130-157 (412)
241 1ofh_A ATP-dependent HSL prote 51.3 28 0.00095 25.8 5.4 17 40-56 50-66 (310)
242 1g8x_A Myosin II heavy chain f 50.9 18 0.00063 32.7 4.8 55 3-57 128-189 (1010)
243 3b9p_A CG5977-PA, isoform A; A 50.9 4.7 0.00016 30.3 0.9 17 40-56 54-70 (297)
244 3vaa_A Shikimate kinase, SK; s 50.7 5.3 0.00018 28.2 1.1 16 41-56 26-41 (199)
245 3a00_A Guanylate kinase, GMP k 50.7 5.4 0.00019 27.9 1.2 16 41-56 2-17 (186)
246 3lre_A Kinesin-like protein KI 50.5 7.6 0.00026 30.8 2.1 24 35-58 100-124 (355)
247 4a14_A Kinesin, kinesin-like p 50.3 8 0.00027 30.5 2.2 22 35-57 78-101 (344)
248 4b4t_I 26S protease regulatory 50.3 3.5 0.00012 33.7 0.1 50 3-56 180-232 (437)
249 1p9r_A General secretion pathw 50.2 4.3 0.00015 32.9 0.7 28 29-56 155-183 (418)
250 2qor_A Guanylate kinase; phosp 50.1 5.9 0.0002 28.1 1.3 16 41-56 13-28 (204)
251 1kag_A SKI, shikimate kinase I 49.9 6 0.00021 26.9 1.3 16 41-56 5-20 (173)
252 1v8k_A Kinesin-like protein KI 49.5 7.8 0.00027 31.4 2.1 24 35-58 149-173 (410)
253 2qgz_A Helicase loader, putati 48.9 5.9 0.0002 30.4 1.2 17 40-56 152-168 (308)
254 3bfn_A Kinesin-like protein KI 48.9 7.1 0.00024 31.4 1.7 22 36-58 94-117 (388)
255 2owm_A Nckin3-434, related to 48.5 8.6 0.0003 31.4 2.2 22 36-58 132-155 (443)
256 3uk6_A RUVB-like 2; hexameric 48.5 6.2 0.00021 30.5 1.3 16 41-56 71-86 (368)
257 2r44_A Uncharacterized protein 48.5 5.7 0.00019 30.4 1.1 21 35-56 42-62 (331)
258 1ojl_A Transcriptional regulat 48.3 8.5 0.00029 29.4 2.0 17 40-56 25-41 (304)
259 3t0q_A AGR253WP; kinesin, alph 48.1 6.9 0.00024 30.9 1.5 26 32-58 77-104 (349)
260 3iij_A Coilin-interacting nucl 47.8 6.7 0.00023 27.0 1.3 16 41-56 12-27 (180)
261 2j41_A Guanylate kinase; GMP, 47.8 6.1 0.00021 27.7 1.1 16 41-56 7-22 (207)
262 3t15_A Ribulose bisphosphate c 47.7 6.1 0.00021 30.0 1.1 16 41-56 37-52 (293)
263 4anj_A Unconventional myosin-V 47.2 18 0.00063 32.9 4.3 55 3-57 99-161 (1052)
264 3ney_A 55 kDa erythrocyte memb 47.0 6.6 0.00023 28.4 1.1 18 38-56 18-35 (197)
265 2heh_A KIF2C protein; kinesin, 46.9 9.2 0.00031 30.7 2.1 23 35-58 129-153 (387)
266 1gvn_B Zeta; postsegregational 46.8 6.5 0.00022 29.9 1.2 16 41-56 34-49 (287)
267 3crm_A TRNA delta(2)-isopenten 46.7 6.3 0.00021 30.9 1.1 15 42-56 7-21 (323)
268 2ewv_A Twitching motility prot 46.7 5.9 0.0002 31.4 0.9 17 41-57 137-153 (372)
269 1kht_A Adenylate kinase; phosp 46.6 6.7 0.00023 27.0 1.1 16 41-56 4-19 (192)
270 2rhm_A Putative kinase; P-loop 46.5 6.7 0.00023 27.1 1.1 16 41-56 6-21 (193)
271 2rep_A Kinesin-like protein KI 46.3 8.3 0.00029 30.8 1.7 24 34-58 109-134 (376)
272 2chg_A Replication factor C sm 46.2 6.3 0.00021 27.5 0.9 15 42-56 40-54 (226)
273 2bdt_A BH3686; alpha-beta prot 46.1 6.3 0.00022 27.4 0.9 15 42-56 4-18 (189)
274 1d2n_A N-ethylmaleimide-sensit 46.1 6.2 0.00021 29.3 0.9 16 41-56 65-80 (272)
275 1nks_A Adenylate kinase; therm 46.0 6.9 0.00024 26.9 1.1 15 42-56 3-17 (194)
276 1l8q_A Chromosomal replication 46.0 7 0.00024 29.8 1.2 16 41-56 38-53 (324)
277 3c8u_A Fructokinase; YP_612366 45.8 7.1 0.00024 27.8 1.2 16 41-56 23-38 (208)
278 4db1_A Myosin-7; S1DC, cardiac 45.7 17 0.00057 32.0 3.7 56 3-58 127-189 (783)
279 3t61_A Gluconokinase; PSI-biol 45.5 6.4 0.00022 27.7 0.9 16 41-56 19-34 (202)
280 3d3q_A TRNA delta(2)-isopenten 45.5 6.7 0.00023 31.0 1.0 15 42-56 9-23 (340)
281 3lnc_A Guanylate kinase, GMP k 45.4 7.3 0.00025 28.2 1.2 16 41-56 28-43 (231)
282 3te6_A Regulatory protein SIR3 45.1 4.1 0.00014 31.8 -0.3 16 41-56 46-61 (318)
283 3lda_A DNA repair protein RAD5 45.0 22 0.00076 28.5 4.1 17 41-57 179-195 (400)
284 1hqc_A RUVB; extended AAA-ATPa 44.9 7.2 0.00025 29.5 1.2 16 41-56 39-54 (324)
285 1z6g_A Guanylate kinase; struc 44.7 7.8 0.00027 28.0 1.3 16 41-56 24-39 (218)
286 3eph_A TRNA isopentenyltransfe 44.4 7.7 0.00026 31.5 1.3 14 43-56 5-18 (409)
287 1g8p_A Magnesium-chelatase 38 44.3 11 0.00039 28.7 2.2 16 41-56 46-61 (350)
288 1lkx_A Myosin IE heavy chain; 44.2 17 0.00058 31.6 3.4 54 3-56 50-110 (697)
289 2o0j_A Terminase, DNA packagin 44.1 26 0.0009 27.9 4.4 37 24-61 163-199 (385)
290 1njg_A DNA polymerase III subu 44.1 12 0.00041 26.2 2.2 15 42-56 47-61 (250)
291 1s96_A Guanylate kinase, GMP k 44.0 7.7 0.00026 28.3 1.1 17 41-57 17-33 (219)
292 1w7j_A Myosin VA; motor protei 43.9 19 0.00065 31.8 3.7 55 3-57 112-173 (795)
293 1ye8_A Protein THEP1, hypothet 43.8 7.6 0.00026 27.3 1.0 16 42-57 2-17 (178)
294 3pfi_A Holliday junction ATP-d 43.8 7.7 0.00026 29.6 1.2 16 41-56 56-71 (338)
295 3asz_A Uridine kinase; cytidin 43.4 7.9 0.00027 27.3 1.1 16 41-56 7-22 (211)
296 1w9i_A Myosin II heavy chain; 43.2 20 0.00068 31.5 3.7 55 3-57 128-189 (770)
297 3jux_A Protein translocase sub 43.2 4.2 0.00014 35.9 -0.5 20 86-105 92-111 (822)
298 2c95_A Adenylate kinase 1; tra 43.1 13 0.00045 25.6 2.2 16 41-56 10-25 (196)
299 1y63_A LMAJ004144AAA protein; 43.0 8.2 0.00028 26.8 1.1 16 41-56 11-26 (184)
300 1um8_A ATP-dependent CLP prote 42.9 8.6 0.00029 30.1 1.3 16 41-56 73-88 (376)
301 2v26_A Myosin VI; calmodulin-b 42.9 28 0.00097 30.6 4.7 54 3-56 95-156 (784)
302 2qp9_X Vacuolar protein sortin 42.8 8.4 0.00029 30.1 1.3 16 41-56 85-100 (355)
303 3cm0_A Adenylate kinase; ATP-b 42.8 7.7 0.00026 26.7 0.9 16 41-56 5-20 (186)
304 4b3f_X DNA-binding protein smu 42.8 7.6 0.00026 33.0 1.1 15 85-99 208-222 (646)
305 2ycu_A Non muscle myosin 2C, a 42.4 21 0.00071 32.3 3.8 55 3-57 102-163 (995)
306 1knq_A Gluconate kinase; ALFA/ 42.4 7.8 0.00027 26.5 0.9 16 41-56 9-24 (175)
307 4eun_A Thermoresistant glucoki 42.4 8.5 0.00029 27.1 1.1 16 41-56 30-45 (200)
308 1tev_A UMP-CMP kinase; ploop, 42.4 8 0.00027 26.6 1.0 16 41-56 4-19 (196)
309 2v1u_A Cell division control p 42.2 7.8 0.00027 29.8 1.0 16 41-56 45-60 (387)
310 1znw_A Guanylate kinase, GMP k 41.9 8.5 0.00029 27.3 1.1 21 36-57 17-37 (207)
311 4akg_A Glutathione S-transfera 41.8 12 0.00041 37.6 2.3 25 32-56 1259-1283(2695)
312 2qmh_A HPR kinase/phosphorylas 41.7 9.7 0.00033 27.9 1.3 15 41-55 35-49 (205)
313 1kk8_A Myosin heavy chain, str 41.7 19 0.00067 31.9 3.5 55 3-57 125-186 (837)
314 2c9o_A RUVB-like 1; hexameric 41.7 8.5 0.00029 31.2 1.2 16 41-56 64-79 (456)
315 4b4t_K 26S protease regulatory 41.6 8.3 0.00028 31.4 1.1 50 3-56 170-222 (428)
316 2bwj_A Adenylate kinase 5; pho 41.4 11 0.00039 26.0 1.7 16 41-56 13-28 (199)
317 1i84_S Smooth muscle myosin he 41.3 21 0.0007 32.9 3.7 55 3-57 125-186 (1184)
318 1zd9_A ADP-ribosylation factor 41.2 5.8 0.0002 27.4 0.1 32 24-55 6-37 (188)
319 1zd8_A GTP:AMP phosphotransfer 41.1 9.2 0.00031 27.5 1.2 16 41-56 8-23 (227)
320 2dfs_A Myosin-5A; myosin-V, in 40.9 21 0.00072 32.6 3.7 55 3-57 112-173 (1080)
321 3kta_A Chromosome segregation 40.6 10 0.00034 26.1 1.3 15 42-56 28-42 (182)
322 1qf9_A UMP/CMP kinase, protein 40.3 9.5 0.00032 26.2 1.1 15 42-56 8-22 (194)
323 2bbw_A Adenylate kinase 4, AK4 40.3 8.8 0.0003 28.0 1.0 16 41-56 28-43 (246)
324 2r62_A Cell division protease 40.0 4.7 0.00016 29.8 -0.6 16 41-56 45-60 (268)
325 2jaq_A Deoxyguanosine kinase; 39.9 9 0.00031 26.6 0.9 14 42-55 2-15 (205)
326 3qf7_A RAD50; ABC-ATPase, ATPa 39.7 8.2 0.00028 30.4 0.7 16 42-57 25-40 (365)
327 4a74_A DNA repair and recombin 39.3 10 0.00034 26.9 1.1 17 41-57 26-42 (231)
328 1sxj_E Activator 1 40 kDa subu 39.1 35 0.0012 26.0 4.3 15 42-56 38-52 (354)
329 2if2_A Dephospho-COA kinase; a 39.1 10 0.00035 26.5 1.2 15 42-56 3-17 (204)
330 4fcw_A Chaperone protein CLPB; 39.0 9.1 0.00031 28.7 0.9 16 41-56 48-63 (311)
331 3fb4_A Adenylate kinase; psych 39.0 9.5 0.00032 27.0 0.9 15 42-56 2-16 (216)
332 2ehv_A Hypothetical protein PH 38.9 10 0.00035 27.2 1.2 17 41-57 31-47 (251)
333 2v54_A DTMP kinase, thymidylat 38.7 11 0.00036 26.4 1.1 16 41-56 5-20 (204)
334 1tue_A Replication protein E1; 38.5 25 0.00087 25.7 3.2 15 42-56 60-74 (212)
335 3uie_A Adenylyl-sulfate kinase 38.4 9.8 0.00033 26.8 0.9 16 41-56 26-41 (200)
336 1zak_A Adenylate kinase; ATP:A 37.9 11 0.00037 27.0 1.1 16 41-56 6-21 (222)
337 1f9v_A Kinesin-like protein KA 37.9 8.5 0.00029 30.4 0.6 24 34-58 78-103 (347)
338 1ukz_A Uridylate kinase; trans 37.5 10 0.00035 26.5 0.9 15 42-56 17-31 (203)
339 2plr_A DTMP kinase, probable t 37.4 11 0.00036 26.4 1.0 16 41-56 5-20 (213)
340 3vfd_A Spastin; ATPase, microt 37.4 10 0.00035 29.9 0.9 16 41-56 149-164 (389)
341 1f2t_A RAD50 ABC-ATPase; DNA d 37.3 11 0.00039 25.4 1.1 14 43-56 26-39 (149)
342 2vli_A Antibiotic resistance p 37.3 11 0.00037 25.8 1.0 16 41-56 6-21 (183)
343 1e6c_A Shikimate kinase; phosp 37.1 10 0.00036 25.6 0.9 16 41-56 3-18 (173)
344 3nwj_A ATSK2; P loop, shikimat 36.9 13 0.00046 27.6 1.5 17 39-56 48-64 (250)
345 2qby_A CDC6 homolog 1, cell di 36.6 13 0.00045 28.4 1.5 16 41-56 46-61 (386)
346 3dl0_A Adenylate kinase; phosp 36.6 11 0.00037 26.8 0.9 15 42-56 2-16 (216)
347 3a4m_A L-seryl-tRNA(SEC) kinas 36.6 11 0.00037 27.9 1.0 16 41-56 5-20 (260)
348 2pbr_A DTMP kinase, thymidylat 36.6 11 0.00037 25.9 0.9 14 43-56 3-16 (195)
349 2qt1_A Nicotinamide riboside k 36.5 12 0.0004 26.4 1.1 16 41-56 22-37 (207)
350 4ag6_A VIRB4 ATPase, type IV s 36.4 12 0.00043 29.4 1.3 17 41-57 36-52 (392)
351 1cke_A CK, MSSA, protein (cyti 36.4 11 0.00038 26.8 1.0 16 41-56 6-21 (227)
352 2qby_B CDC6 homolog 3, cell di 36.3 22 0.00077 27.3 2.8 16 41-56 46-61 (384)
353 2cdn_A Adenylate kinase; phosp 36.0 11 0.00039 26.3 1.0 16 41-56 21-36 (201)
354 1e9r_A Conjugal transfer prote 35.9 14 0.00049 29.4 1.7 27 81-108 52-78 (437)
355 1m7g_A Adenylylsulfate kinase; 35.8 16 0.00054 25.9 1.7 30 25-56 12-41 (211)
356 2z0h_A DTMP kinase, thymidylat 35.7 11 0.00039 25.9 0.9 14 43-56 3-16 (197)
357 1sxj_D Activator 1 41 kDa subu 35.6 19 0.00064 27.4 2.2 16 41-56 59-74 (353)
358 2w0m_A SSO2452; RECA, SSPF, un 35.5 12 0.00043 26.3 1.1 16 41-56 24-39 (235)
359 3tif_A Uncharacterized ABC tra 35.5 12 0.00042 27.4 1.1 15 41-55 32-46 (235)
360 2wwf_A Thymidilate kinase, put 35.4 13 0.00043 26.1 1.1 16 41-56 11-26 (212)
361 2chq_A Replication factor C sm 35.4 39 0.0013 25.0 4.0 15 42-56 40-54 (319)
362 1e4v_A Adenylate kinase; trans 35.3 13 0.00044 26.4 1.2 15 42-56 2-16 (214)
363 1rz3_A Hypothetical protein rb 35.2 13 0.00044 26.2 1.2 16 41-56 23-38 (201)
364 2zan_A Vacuolar protein sortin 35.2 12 0.00041 30.3 1.1 16 41-56 168-183 (444)
365 1via_A Shikimate kinase; struc 35.2 12 0.00041 25.6 0.9 15 42-56 6-20 (175)
366 1jmt_B Splicing factor U2AF 65 35.2 17 0.00059 17.7 1.2 14 20-33 13-26 (28)
367 2pt5_A Shikimate kinase, SK; a 35.1 12 0.0004 25.2 0.9 15 42-56 2-16 (168)
368 2cvh_A DNA repair and recombin 35.0 12 0.00041 26.3 0.9 16 41-56 21-36 (220)
369 1aky_A Adenylate kinase; ATP:A 35.0 13 0.00045 26.5 1.1 16 41-56 5-20 (220)
370 1in4_A RUVB, holliday junction 34.9 12 0.00043 28.7 1.1 16 41-56 52-67 (334)
371 2yvu_A Probable adenylyl-sulfa 34.6 13 0.00043 25.7 1.0 16 41-56 14-29 (186)
372 1gtv_A TMK, thymidylate kinase 34.5 7.4 0.00025 27.4 -0.3 14 43-56 3-16 (214)
373 2iyv_A Shikimate kinase, SK; t 34.4 12 0.00043 25.6 0.9 16 41-56 3-18 (184)
374 3auy_A DNA double-strand break 34.4 14 0.00047 29.0 1.3 14 43-56 28-41 (371)
375 1nn5_A Similar to deoxythymidy 34.1 14 0.00046 26.0 1.1 16 41-56 10-25 (215)
376 2h57_A ADP-ribosylation factor 34.1 13 0.00044 25.5 0.9 15 41-55 22-36 (190)
377 1fnn_A CDC6P, cell division co 34.0 13 0.00044 28.7 1.0 15 42-56 46-60 (389)
378 1jjv_A Dephospho-COA kinase; P 33.9 13 0.00043 26.2 0.9 14 43-56 5-18 (206)
379 1ak2_A Adenylate kinase isoenz 33.8 12 0.00042 27.0 0.9 16 41-56 17-32 (233)
380 3f9v_A Minichromosome maintena 33.7 15 0.00051 31.1 1.5 15 42-56 329-343 (595)
381 2dr3_A UPF0273 protein PH0284; 33.5 15 0.00053 26.2 1.3 16 41-56 24-39 (247)
382 1zuh_A Shikimate kinase; alpha 33.4 13 0.00046 25.1 0.9 16 41-56 8-23 (168)
383 1w36_D RECD, exodeoxyribonucle 33.1 8.4 0.00029 32.6 -0.2 28 80-107 162-191 (608)
384 1iqp_A RFCS; clamp loader, ext 32.7 25 0.00086 26.2 2.5 15 42-56 48-62 (327)
385 1uf9_A TT1252 protein; P-loop, 32.6 15 0.00051 25.5 1.1 15 42-56 10-24 (203)
386 2pez_A Bifunctional 3'-phospho 32.6 14 0.00048 25.3 1.0 16 41-56 6-21 (179)
387 3hu3_A Transitional endoplasmi 32.6 14 0.00049 30.4 1.1 16 41-56 239-254 (489)
388 2pcj_A ABC transporter, lipopr 32.0 17 0.00057 26.4 1.3 16 41-56 31-46 (224)
389 1np6_A Molybdopterin-guanine d 32.0 15 0.0005 25.8 0.9 15 42-56 8-22 (174)
390 1xjc_A MOBB protein homolog; s 31.9 15 0.00051 25.8 1.0 13 43-55 7-19 (169)
391 1htw_A HI0065; nucleotide-bind 31.9 15 0.0005 25.3 0.9 15 41-55 34-48 (158)
392 2z4s_A Chromosomal replication 31.7 16 0.00056 29.5 1.3 16 41-56 131-146 (440)
393 2xb4_A Adenylate kinase; ATP-b 31.6 15 0.0005 26.4 0.9 15 42-56 2-16 (223)
394 3vkg_A Dynein heavy chain, cyt 31.5 22 0.00075 36.4 2.3 25 31-55 1295-1319(3245)
395 3pxg_A Negative regulator of g 31.5 17 0.00057 29.6 1.3 17 40-56 201-217 (468)
396 2r2a_A Uncharacterized protein 31.4 15 0.00052 26.3 1.0 15 42-56 7-21 (199)
397 4h1g_A Maltose binding protein 31.4 20 0.00068 30.9 1.9 27 32-58 454-481 (715)
398 3cf2_A TER ATPase, transitiona 31.3 12 0.0004 33.1 0.4 50 3-56 475-527 (806)
399 2ius_A DNA translocase FTSK; n 31.0 18 0.00063 30.1 1.5 17 41-57 168-184 (512)
400 2cbz_A Multidrug resistance-as 30.8 16 0.00056 26.8 1.1 16 41-56 32-47 (237)
401 2p5t_B PEZT; postsegregational 30.8 12 0.00043 27.5 0.4 16 41-56 33-48 (253)
402 2onk_A Molybdate/tungstate ABC 30.8 16 0.00053 27.0 1.0 15 42-56 26-40 (240)
403 3pvs_A Replication-associated 30.8 15 0.00052 29.8 1.0 15 42-56 52-66 (447)
404 2i3b_A HCR-ntpase, human cance 30.6 18 0.00061 25.6 1.2 17 41-57 2-18 (189)
405 1vht_A Dephospho-COA kinase; s 30.4 16 0.00054 25.9 0.9 16 41-56 5-20 (218)
406 2zts_A Putative uncharacterize 30.4 17 0.00057 26.0 1.1 15 41-55 31-45 (251)
407 1cr0_A DNA primase/helicase; R 30.3 17 0.00057 27.3 1.1 17 41-57 36-52 (296)
408 1mv5_A LMRA, multidrug resista 30.3 16 0.00055 26.9 1.0 16 41-56 29-44 (243)
409 1n0w_A DNA repair protein RAD5 30.3 16 0.00055 26.1 1.0 17 41-57 25-41 (243)
410 3gfo_A Cobalt import ATP-bindi 30.3 16 0.00055 27.6 1.0 16 41-56 35-50 (275)
411 3b9q_A Chloroplast SRP recepto 30.2 16 0.00054 28.0 0.9 16 42-57 102-117 (302)
412 2ce7_A Cell division protein F 30.1 17 0.00057 30.0 1.1 50 3-56 14-65 (476)
413 1odf_A YGR205W, hypothetical 3 30.1 16 0.00055 27.8 1.0 14 43-56 34-47 (290)
414 3be4_A Adenylate kinase; malar 30.0 19 0.00065 25.6 1.3 16 41-56 6-21 (217)
415 1ltq_A Polynucleotide kinase; 29.9 16 0.00056 27.3 1.0 15 42-56 4-18 (301)
416 3tlx_A Adenylate kinase 2; str 29.8 17 0.00057 26.7 1.0 16 41-56 30-45 (243)
417 1sgw_A Putative ABC transporte 29.7 19 0.00067 26.0 1.3 16 41-56 36-51 (214)
418 3aez_A Pantothenate kinase; tr 29.7 16 0.00056 28.1 0.9 15 42-56 92-106 (312)
419 2pze_A Cystic fibrosis transme 29.6 18 0.00062 26.3 1.2 16 41-56 35-50 (229)
420 2h17_A ADP-ribosylation factor 29.4 18 0.00062 24.5 1.1 15 41-55 22-36 (181)
421 3qks_A DNA double-strand break 29.1 16 0.00054 26.1 0.7 15 42-56 25-39 (203)
422 2jeo_A Uridine-cytidine kinase 29.1 17 0.00058 26.5 0.9 17 41-57 26-42 (245)
423 1g6h_A High-affinity branched- 29.0 18 0.00063 26.8 1.1 16 41-56 34-49 (257)
424 1rj9_A FTSY, signal recognitio 28.7 17 0.00059 27.9 0.9 16 41-56 103-118 (304)
425 1nij_A Hypothetical protein YJ 28.5 19 0.00064 27.6 1.1 14 43-56 7-20 (318)
426 1sxj_A Activator 1 95 kDa subu 28.4 17 0.00059 29.9 0.9 16 41-56 78-93 (516)
427 3sop_A Neuronal-specific septi 28.4 18 0.00063 27.1 1.0 15 42-56 4-18 (270)
428 4g1u_C Hemin import ATP-bindin 28.2 19 0.00067 26.9 1.1 16 41-56 38-53 (266)
429 2ghi_A Transport protein; mult 28.2 19 0.00066 26.8 1.1 16 41-56 47-62 (260)
430 1g41_A Heat shock protein HSLU 28.1 21 0.00071 29.2 1.3 16 41-56 51-66 (444)
431 3k1j_A LON protease, ATP-depen 28.1 30 0.001 29.1 2.3 20 36-56 57-76 (604)
432 1sxj_C Activator 1 40 kDa subu 28.0 39 0.0013 25.7 2.9 14 43-56 49-62 (340)
433 2ff7_A Alpha-hemolysin translo 27.5 20 0.00069 26.5 1.1 16 41-56 36-51 (247)
434 2v9p_A Replication protein E1; 27.4 20 0.00068 27.7 1.0 17 40-56 126-142 (305)
435 1ji0_A ABC transporter; ATP bi 27.3 21 0.0007 26.2 1.1 16 41-56 33-48 (240)
436 2vp4_A Deoxynucleoside kinase; 27.2 19 0.00065 26.0 0.9 15 41-55 21-35 (230)
437 2px0_A Flagellar biosynthesis 27.0 22 0.00075 27.1 1.3 17 41-57 106-122 (296)
438 1b0u_A Histidine permease; ABC 27.0 21 0.00073 26.6 1.2 16 41-56 33-48 (262)
439 3qkt_A DNA double-strand break 26.9 21 0.00071 27.6 1.1 15 43-57 26-40 (339)
440 1sq5_A Pantothenate kinase; P- 26.7 21 0.00073 27.1 1.2 16 41-56 81-96 (308)
441 2b8t_A Thymidine kinase; deoxy 26.7 17 0.00057 26.7 0.5 17 41-57 13-29 (223)
442 1nlf_A Regulatory protein REPA 26.6 23 0.00077 26.3 1.2 19 38-57 29-47 (279)
443 2yz2_A Putative ABC transporte 26.6 22 0.00074 26.6 1.1 16 41-56 34-49 (266)
444 2qi9_C Vitamin B12 import ATP- 26.5 22 0.00075 26.4 1.2 16 41-56 27-42 (249)
445 3pxi_A Negative regulator of g 26.1 23 0.00078 30.6 1.3 17 40-56 201-217 (758)
446 1a7j_A Phosphoribulokinase; tr 26.0 22 0.00076 26.9 1.1 14 43-56 8-21 (290)
447 2ce2_X GTPase HRAS; signaling 26.0 25 0.00084 22.9 1.2 14 42-55 5-18 (166)
448 1e69_A Chromosome segregation 25.8 26 0.0009 26.7 1.5 15 42-56 26-40 (322)
449 2olj_A Amino acid ABC transpor 25.7 23 0.00079 26.5 1.2 16 41-56 51-66 (263)
450 2nq2_C Hypothetical ABC transp 25.7 23 0.00079 26.3 1.1 16 41-56 32-47 (253)
451 4e22_A Cytidylate kinase; P-lo 25.6 22 0.00074 26.2 1.0 16 41-56 28-43 (252)
452 2d2e_A SUFC protein; ABC-ATPas 25.6 23 0.00079 26.1 1.1 17 41-57 30-46 (250)
453 2dyk_A GTP-binding protein; GT 25.5 24 0.00081 23.0 1.1 14 42-55 3-16 (161)
454 2zu0_C Probable ATP-dependent 25.5 24 0.0008 26.4 1.2 16 41-56 47-62 (267)
455 1pui_A ENGB, probable GTP-bind 25.5 24 0.00082 24.5 1.2 16 41-56 27-42 (210)
456 2ihy_A ABC transporter, ATP-bi 25.4 24 0.00081 26.7 1.2 16 41-56 48-63 (279)
457 2orw_A Thymidine kinase; TMTK, 25.4 20 0.00069 25.1 0.7 17 41-57 4-20 (184)
458 1vpl_A ABC transporter, ATP-bi 25.3 24 0.00082 26.3 1.2 16 41-56 42-57 (256)
459 2f1r_A Molybdopterin-guanine d 25.3 10 0.00035 26.5 -0.9 16 42-57 4-19 (171)
460 2ixe_A Antigen peptide transpo 25.2 24 0.00081 26.5 1.1 16 41-56 46-61 (271)
461 2og2_A Putative signal recogni 24.8 22 0.00077 28.0 0.9 16 42-57 159-174 (359)
462 3e70_C DPA, signal recognition 24.7 23 0.00078 27.5 1.0 16 41-56 130-145 (328)
463 2iut_A DNA translocase FTSK; n 24.7 22 0.00076 30.1 0.9 18 41-58 215-232 (574)
464 2f6r_A COA synthase, bifunctio 24.6 25 0.00084 26.4 1.1 15 42-56 77-91 (281)
465 3tqc_A Pantothenate kinase; bi 24.3 24 0.00081 27.4 1.0 14 43-56 95-108 (321)
466 1oix_A RAS-related protein RAB 24.2 26 0.0009 24.1 1.2 14 42-55 31-44 (191)
467 1z2a_A RAS-related protein RAB 24.0 26 0.00089 23.0 1.0 14 42-55 7-20 (168)
468 3bqs_A Uncharacterized protein 23.9 76 0.0026 19.8 3.2 32 1-32 3-35 (93)
469 1jr3_A DNA polymerase III subu 23.9 23 0.0008 27.1 0.9 15 42-56 40-54 (373)
470 2qen_A Walker-type ATPase; unk 23.7 42 0.0015 25.1 2.3 16 41-56 32-47 (350)
471 1uj2_A Uridine-cytidine kinase 23.7 24 0.00084 25.7 0.9 15 42-56 24-38 (252)
472 2pjz_A Hypothetical protein ST 23.7 26 0.0009 26.2 1.1 16 41-56 31-46 (263)
473 3m6a_A ATP-dependent protease 23.4 25 0.00086 29.2 1.0 16 41-56 109-124 (543)
474 2ged_A SR-beta, signal recogni 23.3 27 0.00094 23.7 1.1 15 41-55 49-63 (193)
475 2grj_A Dephospho-COA kinase; T 23.1 26 0.00088 24.8 0.9 15 42-56 14-28 (192)
476 1g16_A RAS-related protein SEC 23.1 30 0.001 22.7 1.2 14 42-55 5-18 (170)
477 1svi_A GTP-binding protein YSX 23.1 31 0.0011 23.4 1.3 15 41-55 24-38 (195)
478 3pqc_A Probable GTP-binding pr 23.0 31 0.0011 23.3 1.3 15 41-55 24-38 (195)
479 2dhr_A FTSH; AAA+ protein, hex 23.0 25 0.00085 29.1 0.9 16 41-56 65-80 (499)
480 3ake_A Cytidylate kinase; CMP 22.8 26 0.0009 24.2 0.9 15 42-56 4-18 (208)
481 1ky3_A GTP-binding protein YPT 22.5 29 0.001 23.1 1.1 15 41-55 9-23 (182)
482 1z0j_A RAB-22, RAS-related pro 22.5 29 0.001 22.7 1.1 15 41-55 7-21 (170)
483 1ypw_A Transitional endoplasmi 22.3 23 0.0008 31.1 0.6 16 41-56 239-254 (806)
484 2bbs_A Cystic fibrosis transme 22.3 31 0.0011 26.2 1.3 16 41-56 65-80 (290)
485 1r6b_X CLPA protein; AAA+, N-t 22.3 28 0.00097 29.9 1.2 17 40-56 207-223 (758)
486 1xx6_A Thymidine kinase; NESG, 22.3 23 0.00079 25.2 0.5 17 42-58 10-26 (191)
487 1vma_A Cell division protein F 22.1 28 0.00095 26.8 1.0 15 42-56 106-120 (306)
488 1ek0_A Protein (GTP-binding pr 22.0 30 0.001 22.6 1.0 15 41-55 4-18 (170)
489 2f9l_A RAB11B, member RAS onco 21.7 29 0.00099 24.0 1.0 14 42-55 7-20 (199)
490 3bh0_A DNAB-like replicative h 21.5 30 0.001 26.4 1.1 15 41-55 69-83 (315)
491 3sr0_A Adenylate kinase; phosp 21.5 29 0.00099 24.9 0.9 14 42-55 2-15 (206)
492 1u8z_A RAS-related protein RAL 21.5 31 0.0011 22.4 1.0 15 41-55 5-19 (168)
493 1p5z_B DCK, deoxycytidine kina 21.4 29 0.00099 25.5 0.9 16 41-56 25-40 (263)
494 1kao_A RAP2A; GTP-binding prot 21.4 32 0.0011 22.4 1.1 15 41-55 4-18 (167)
495 4eaq_A DTMP kinase, thymidylat 21.3 30 0.001 25.1 0.9 16 41-56 27-42 (229)
496 1c1y_A RAS-related protein RAP 21.3 32 0.0011 22.5 1.0 15 41-55 4-18 (167)
497 1moz_A ARL1, ADP-ribosylation 21.2 37 0.0013 22.7 1.4 15 41-55 19-33 (183)
498 2erx_A GTP-binding protein DI- 21.1 33 0.0011 22.5 1.1 15 41-55 4-18 (172)
499 3zvl_A Bifunctional polynucleo 21.0 29 0.00099 27.7 0.9 16 41-56 259-274 (416)
500 2ocp_A DGK, deoxyguanosine kin 20.9 33 0.0011 24.7 1.2 15 41-55 3-17 (241)
No 1
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.85 E-value=7.7e-22 Score=155.91 Aligned_cols=66 Identities=24% Similarity=0.584 Sum_probs=60.8
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHcc-CCcEEEEeecCCCcccccccchhhhhh
Q psy11948 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA-RKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~-~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
+.+|++|+|++.++++|..+||..||++|.++||.++.| ++|++++++||||||++|++|++..+.
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~ 157 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVE 157 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred cCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhh
Confidence 358999999999999999999999999999999999976 589999999999999999999987654
No 2
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.81 E-value=1.9e-20 Score=154.36 Aligned_cols=66 Identities=33% Similarity=0.615 Sum_probs=62.4
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhhc
Q psy11948 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67 (167)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~~ 67 (167)
+.+|++++|++.++++|.++||..|||+|+++||.++.| +|++++++||||||++|++|++..+..
T Consensus 55 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g-~d~i~~a~TGsGKT~a~~lpil~~l~~ 120 (434)
T 2db3_A 55 IQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSG-RDLMACAQTGSGKTAAFLLPILSKLLE 120 (434)
T ss_dssp CCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CCEEEECCCCCCchHHHHHHHHHHHHh
Confidence 468999999999999999999999999999999999998 999999999999999999999988773
No 3
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.81 E-value=4.4e-20 Score=141.04 Aligned_cols=65 Identities=35% Similarity=0.601 Sum_probs=61.6
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
+.+|.+++|++.++++|.+.||..|+++|.++||.++.| +|++++++||+|||++|++|++..+.
T Consensus 28 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g-~~~l~~apTGsGKT~~~~l~~l~~l~ 92 (242)
T 3fe2_A 28 VLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSG-LDMVGVAQTGSGKTLSYLLPAIVHIN 92 (242)
T ss_dssp CSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHT-CCEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCcCHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999998 99999999999999999999988765
No 4
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.80 E-value=4.2e-20 Score=137.28 Aligned_cols=64 Identities=28% Similarity=0.591 Sum_probs=60.1
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 2 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
++|++|+|++.++++|.+.||..|+++|.++++.++.| +|++++++||+|||++|++|++..+.
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~apTGsGKT~~~~~~~~~~~~ 66 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSG-RDILARAKNGTGKSGAYLIPLLERLD 66 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTT-CCEEEECCSSSTTHHHHHHHHHHHCC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccC-CCEEEECCCCCchHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999988 99999999999999999999876654
No 5
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.80 E-value=2.6e-20 Score=140.15 Aligned_cols=64 Identities=36% Similarity=0.626 Sum_probs=60.3
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 2 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
++|++|+|++.++++|.+.||..|+++|.++++.++.| +|++++++||+|||++|++|++..+.
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~~~~l~~l~ 67 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRG-ESMVGQSQTGTGKTHAYLLPIMEKIK 67 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHT-CCEEEECCSSHHHHHHHHHHHHHHCC
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999998 99999999999999999999887654
No 6
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.79 E-value=6.3e-20 Score=139.17 Aligned_cols=64 Identities=25% Similarity=0.480 Sum_probs=60.3
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 2 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
.+|++|+|++.++++|.+.||..|+++|.++|+.++.| +|++++++||+|||++|++|++..+.
T Consensus 24 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~l~~a~TGsGKT~~~~l~~l~~l~ 87 (230)
T 2oxc_A 24 ADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCG-LDLIVQAKSGTGKTCVFSTIALDSLV 87 (230)
T ss_dssp CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCCcHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999998 99999999999999999999987654
No 7
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.79 E-value=6.7e-20 Score=140.99 Aligned_cols=64 Identities=42% Similarity=0.677 Sum_probs=60.6
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 2 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
.+|++|+|++.++++|...||..|+++|.++|+.++.| +|++++++||+|||++|++|++..+.
T Consensus 43 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~-~~~lv~a~TGsGKT~~~~~~il~~l~ 106 (249)
T 3ber_A 43 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQG-RDIIGLAETGSGKTGAFALPILNALL 106 (249)
T ss_dssp CCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC-CCEEEEcCCCCCchhHhHHHHHHHHh
Confidence 57999999999999999999999999999999999998 99999999999999999999987665
No 8
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.79 E-value=5.1e-20 Score=140.35 Aligned_cols=65 Identities=29% Similarity=0.618 Sum_probs=60.4
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
+.+|++|+|++.++++|.+.||..|+++|.++|+.++.| +|++++++||+|||++|++|++..+.
T Consensus 29 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~-~~~li~apTGsGKT~~~~l~~l~~l~ 93 (237)
T 3bor_A 29 VDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKG-YDVIAQAQSGTGKTATFAISILQQLE 93 (237)
T ss_dssp CCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEECCCSSHHHHHHHHHHHHHHCC
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCCcHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999998 99999999999999999999887654
No 9
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.78 E-value=1.5e-19 Score=137.30 Aligned_cols=65 Identities=35% Similarity=0.623 Sum_probs=61.5
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
+++|++++|++.++++|.+.||..|+++|.++++.++.| +|++++++||+|||++|++|++..+.
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~-~~~li~a~TGsGKT~~~~~~~l~~l~ 88 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQG-KDVLGAAKTGSGKTLAFLVPVLEALY 88 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEEeCCCCcHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999988 99999999999999999999988776
No 10
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.78 E-value=1.5e-19 Score=136.09 Aligned_cols=65 Identities=26% Similarity=0.522 Sum_probs=60.7
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
+.+|++++|++.++++|.+.||..|+++|.++++.++.| +|++++++||+|||++|.+|++..+.
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~~pTGsGKT~~~~~~~l~~l~ 77 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEG-HDVLAQAQSGTGKTGTFSIAALQRID 77 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CCEEEECCCCCcHHHHHHHHHHHHHh
Confidence 468999999999999999999999999999999999998 99999999999999999999987654
No 11
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.78 E-value=2.3e-19 Score=134.83 Aligned_cols=64 Identities=28% Similarity=0.555 Sum_probs=59.6
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 2 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
++|++++|++.++++|.+.||..|+++|.++++.++.| +|++++++||+|||++|++|++..+.
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~li~~~TGsGKT~~~~~~~~~~~~ 77 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILG-MDVLCQAKSGMGKTAVFVLATLQQLE 77 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCCchhhhhhHHHHHhhh
Confidence 57999999999999999999999999999999999998 89999999999999999999876543
No 12
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.78 E-value=9e-20 Score=137.83 Aligned_cols=65 Identities=28% Similarity=0.461 Sum_probs=60.5
Q ss_pred CCcccc-CCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 1 MAEWVK-FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 1 ~~~f~~-l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
+.+|.+ +++++.++++|.+.||..|+++|.++||.++.| +|++++++||+|||++|++|++..+.
T Consensus 18 ~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~l~~apTGsGKT~~~~l~~~~~l~ 83 (228)
T 3iuy_A 18 TCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQG-IDLIVVAQTGTGKTLSYLMPGFIHLD 83 (228)
T ss_dssp CCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHC
T ss_pred hhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHHH
Confidence 357888 899999999999999999999999999999988 99999999999999999999987765
No 13
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.78 E-value=1.4e-19 Score=138.23 Aligned_cols=65 Identities=37% Similarity=0.686 Sum_probs=59.4
Q ss_pred CCccccC----CCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 1 MAEWVKF----NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 1 ~~~f~~l----~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
+.+|+++ +|++.++++|.+.||..|+++|.++||.++.| +|++++++||+|||++|++|++..+.
T Consensus 24 ~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~l~~a~TGsGKT~~~~l~~l~~l~ 92 (245)
T 3dkp_A 24 IATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHG-RELLASAPTGSGKTLAFSIPILMQLK 92 (245)
T ss_dssp CSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHC
T ss_pred ccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCCcHHHHHHHHHHHHHh
Confidence 3567776 89999999999999999999999999999998 99999999999999999999987664
No 14
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.77 E-value=2.9e-19 Score=132.66 Aligned_cols=64 Identities=44% Similarity=0.735 Sum_probs=60.5
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 2 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
++|++|+|++.++++|.+.||..|+++|.++++.++.| +|++++++||+|||++|++|++..+.
T Consensus 1 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~-~~~li~~~TGsGKT~~~~~~~~~~l~ 64 (207)
T 2gxq_A 1 MEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEG-KDLIGQARTGTGKTLAFALPIAERLA 64 (207)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCC-CCEEEECCCCChHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999998 99999999999999999999987765
No 15
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.77 E-value=2.5e-19 Score=145.49 Aligned_cols=66 Identities=30% Similarity=0.515 Sum_probs=62.4
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhhc
Q psy11948 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67 (167)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~~ 67 (167)
+.+|++|+|++.++++|...||..|||+|.++||.++.| +|++++++||+|||++|++|++..+..
T Consensus 14 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~-~~~lv~a~TGsGKT~~~~~~~l~~~~~ 79 (417)
T 2i4i_A 14 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEK-RDLMACAQTGSGKTAAFLLPILSQIYS 79 (417)
T ss_dssp CSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred cCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccC-CCEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence 468999999999999999999999999999999999988 999999999999999999999988763
No 16
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.77 E-value=6.8e-20 Score=140.62 Aligned_cols=66 Identities=35% Similarity=0.575 Sum_probs=62.1
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhhc
Q psy11948 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67 (167)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~~ 67 (167)
+++|++|+|++.++++|...||..|+++|.++|+.++.| +|++++++||+|||++|++|++..+..
T Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~-~~~l~~a~TGsGKT~~~~~~~l~~l~~ 87 (253)
T 1wrb_A 22 IENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEH-RDIMACAQTGSGKTAAFLIPIINHLVC 87 (253)
T ss_dssp CCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHHHh
Confidence 467999999999999999999999999999999999998 999999999999999999999888763
No 17
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.74 E-value=8.5e-19 Score=135.74 Aligned_cols=63 Identities=38% Similarity=0.569 Sum_probs=56.0
Q ss_pred ccccCC--CCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 3 EWVKFN--IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 3 ~f~~l~--l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
+|++++ |++.++++|.+.||..|+++|.++||.++.| +|++++++||+|||++|++|++..+.
T Consensus 53 ~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~l~~l~~l~ 117 (262)
T 3ly5_A 53 SFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEG-RDLLAAAKTGSGKTLAFLIPAVELIV 117 (262)
T ss_dssp CC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHT-CCCEECCCTTSCHHHHHHHHHHHHHH
T ss_pred ChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CcEEEEccCCCCchHHHHHHHHHHHH
Confidence 577777 9999999999999999999999999999999 99999999999999999999988766
No 18
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.74 E-value=1.1e-18 Score=144.94 Aligned_cols=65 Identities=25% Similarity=0.585 Sum_probs=59.6
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHcc-CCcEEEEeecCCCcccccccchhhhhh
Q psy11948 2 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA-RKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~-~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
.+|.+++|++.++++|.++||..|||+|.++||.++.+ ++|++++++||||||++|++|++..+.
T Consensus 92 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~ 157 (479)
T 3fmp_B 92 KSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVE 157 (479)
T ss_dssp CCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCC
T ss_pred CCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999975 589999999999999999999876654
No 19
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.74 E-value=2.1e-18 Score=139.52 Aligned_cols=66 Identities=24% Similarity=0.584 Sum_probs=60.3
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHcc-CCcEEEEeecCCCcccccccchhhhhh
Q psy11948 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA-RKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~-~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
+.+|++++|++.++++|.+.||..|+|+|.++|+.++.+ +++++++++||+|||++|++|++..+.
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~ 90 (412)
T 3fht_A 24 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVE 90 (412)
T ss_dssp SSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhh
Confidence 468999999999999999999999999999999999976 589999999999999999999876654
No 20
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.73 E-value=2.7e-18 Score=139.41 Aligned_cols=63 Identities=25% Similarity=0.618 Sum_probs=59.4
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhh
Q psy11948 2 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65 (167)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~ 65 (167)
.+|++|+|++.++++|.+.||..|+|+|.++|+.++.| +|++++++||+|||++|++|++..+
T Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~-~~~lv~a~TGsGKT~~~~~~~~~~l 99 (410)
T 2j0s_A 37 PTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKG-RDVIAQSQSGTGKTATFSISVLQCL 99 (410)
T ss_dssp CSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHTC
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC-CCEEEECCCCCCchHHHHHHHHHHH
Confidence 57999999999999999999999999999999999998 9999999999999999999987654
No 21
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.72 E-value=7e-18 Score=135.48 Aligned_cols=66 Identities=24% Similarity=0.570 Sum_probs=60.0
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccC-CcEEEEeecCCCcccccccchhhhhh
Q psy11948 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLAR-KDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~-~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
+.+|++++|++.++++|.+.||..|+|+|.++++.++.+. ++++++++||+|||++|++|++..+.
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~ 70 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVN 70 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhc
Confidence 4689999999999999999999999999999999998763 79999999999999999998876543
No 22
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.70 E-value=1.4e-17 Score=134.57 Aligned_cols=64 Identities=31% Similarity=0.642 Sum_probs=59.8
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 2 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
.+|++|+|++.++++|.+.||..|+|+|.++++.++.| ++++++++||+|||++|++|++..+.
T Consensus 21 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~-~~~li~a~TGsGKT~~~~~~~~~~~~ 84 (400)
T 1s2m_A 21 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITG-RDILARAKNGTGKTAAFVIPTLEKVK 84 (400)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHT-CCEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC-CCEEEECCCCcHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999998 89999999999999999999876543
No 23
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.69 E-value=1.3e-17 Score=134.21 Aligned_cols=64 Identities=28% Similarity=0.555 Sum_probs=59.1
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 2 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
++|++|+|++.++++|.+.||..|+|+|.++++.++.| +|++++++||+|||++|++|++..+.
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~~~~~~~l~ 71 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILG-MDVLCQAKSGMGKTAVFVLATLQQLE 71 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTT-CCEEEECSSCSSHHHHHHHHHHHHCC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC-CcEEEECCCCCcHHHHHHHHHHHhhc
Confidence 57999999999999999999999999999999999998 99999999999999999999876543
No 24
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.68 E-value=1.3e-17 Score=134.21 Aligned_cols=64 Identities=27% Similarity=0.522 Sum_probs=59.9
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 2 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
.+|++++|++.++++|.+.||..|+|+|.++++.++.| +|++++++||+|||++|.+|++..+.
T Consensus 21 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~-~~~lv~~~TGsGKT~~~~~~~~~~l~ 84 (394)
T 1fuu_A 21 YKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEG-HDVLAQAQSGTGKTGTFSIAALQRID 84 (394)
T ss_dssp CSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHT-CCEEECCCSSHHHHHHHHHHHHHHCC
T ss_pred CChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHhh
Confidence 67999999999999999999999999999999999998 99999999999999999999876654
No 25
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.67 E-value=4.1e-17 Score=132.17 Aligned_cols=64 Identities=31% Similarity=0.629 Sum_probs=59.8
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 2 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
.+|+++++++.++++|.+.||..|+++|.++|+.++.| +|++++++||+|||++|++|++..+.
T Consensus 40 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~~~~~~~~~ 103 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKG-YDVIAQAQSGTGKTATFAISILQQIE 103 (414)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEECCCSCSSSHHHHHHHHHHHCC
T ss_pred cCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCC-CCEEEECCCCCcccHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999998 89999999999999999999887654
No 26
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.66 E-value=5.6e-17 Score=129.02 Aligned_cols=64 Identities=39% Similarity=0.659 Sum_probs=59.4
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhh
Q psy11948 2 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65 (167)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~ 65 (167)
++|++++|++.++++|.+.||..|+|+|.++++.++.+++++++.++||+|||++|++|++..+
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~ 69 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELV 69 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHS
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999999998867999999999999999998887554
No 27
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=2.9e-17 Score=139.73 Aligned_cols=57 Identities=32% Similarity=0.522 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHCCCCCCchHHHhHHHHHH--ccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 9 IPETIIRALYQKGFKTPTKIQSMVMPSAL--LARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 9 l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l--~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
|+++++++|...||..|+|+|.++|+.++ .| +|++++++||+|||++|++|++..+.
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~-~dvlv~apTGsGKTl~~~lpil~~l~ 86 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSED-HDVIARAKTGTGKTFAFLIPIFQHLI 86 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSS-EEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCC-CeEEEEcCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 45 89999999999999999999988776
No 28
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.64 E-value=4.9e-17 Score=137.43 Aligned_cols=59 Identities=32% Similarity=0.536 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHCCCCCCchHHHhHHHHHHcc-CCcEEEEeecCCCcccccccchhhhhhc
Q psy11948 9 IPETIIRALYQKGFKTPTKIQSMVMPSALLA-RKDIVGAAETGSGKTLAFGIPILTGIVN 67 (167)
Q Consensus 9 l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~-~~d~i~~a~tgsGKt~~~~lp~l~~~~~ 67 (167)
|+++++++|.+.||..|+|+|.++|+.++.+ ++|++++++||+|||++|++|++..+..
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~ 138 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN 138 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHh
Confidence 9999999999999999999999999999942 3899999999999999999999887763
No 29
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.53 E-value=3.6e-15 Score=129.77 Aligned_cols=64 Identities=25% Similarity=0.278 Sum_probs=58.7
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCchHHHhHHHH-HHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 2 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPS-ALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~-~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
++|++|+|++++.+.+++.||..|+++|.++|+. +..+ ++++++++||||||+++.+|++..+.
T Consensus 1 ~~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~-~~~lv~apTGsGKT~~~~l~il~~~~ 65 (720)
T 2zj8_A 1 MRVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEG-KNALISIPTASGKTLIAEIAMVHRIL 65 (720)
T ss_dssp CBGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGT-CEEEEECCGGGCHHHHHHHHHHHHHH
T ss_pred CcHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCC-CcEEEEcCCccHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999998 6666 99999999999999999999886654
No 30
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.53 E-value=4.9e-15 Score=128.72 Aligned_cols=64 Identities=22% Similarity=0.340 Sum_probs=58.4
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCchHHHhHHHH-HHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 2 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPS-ALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~-~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
++|++|+|++++.+.+.+.||..|+|+|.++|+. +..+ ++++++++||||||+++.++++..+.
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~-~~~lv~apTGsGKT~~~~l~il~~~~ 72 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEG-NRLLLTSPTGSGKTLIAEMGIISFLL 72 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTT-CCEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCC-CcEEEEcCCCCcHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999998 5555 99999999999999999999886654
No 31
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.51 E-value=1.4e-14 Score=113.96 Aligned_cols=53 Identities=47% Similarity=0.676 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchh
Q psy11948 9 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62 (167)
Q Consensus 9 l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l 62 (167)
|++++.++|.++||..|+|+|.++++.++.+ +++++.++||+|||++|++|++
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~-~~~lv~~~TGsGKT~~~~~~~~ 53 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQG-KNVVVRAKTGSGKTAAYAIPIL 53 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CCEEEEcCCCCcHHHHHHHHHH
Confidence 6899999999999999999999999999988 8999999999999999888875
No 32
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.50 E-value=4.2e-15 Score=125.37 Aligned_cols=61 Identities=26% Similarity=0.382 Sum_probs=58.0
Q ss_pred CCccccCCCCHHHHHHHHH-CCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchh
Q psy11948 1 MAEWVKFNIPETIIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62 (167)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l 62 (167)
|.+|++|+|++.+.+.|++ .||..|+|+|.++|+.++.| +|+++.++||+|||++|.+|.+
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g-~d~lv~apTGsGKTl~~~lp~l 62 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSG-RDCLVVMPTGGGKSLCYQIPAL 62 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTT-CCEEEECSCHHHHHHHHHHHHH
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcC-CCEEEECCCCcHHHHHHHHHHH
Confidence 6789999999999999998 89999999999999999998 8999999999999999998875
No 33
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.48 E-value=2.6e-14 Score=122.14 Aligned_cols=57 Identities=19% Similarity=0.300 Sum_probs=53.3
Q ss_pred ccCCCCHHHHHHHHH-CCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchh
Q psy11948 5 VKFNIPETIIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62 (167)
Q Consensus 5 ~~l~l~~~l~~~l~~-~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l 62 (167)
.+|++++.+.+.|++ .||..|+|+|.++|+.++.| +|+++.++||+|||++|.+|.+
T Consensus 24 ~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g-~d~lv~~pTGsGKTl~~~lpal 81 (591)
T 2v1x_A 24 EDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAG-KEVFLVMPTGGGKSLCYQLPAL 81 (591)
T ss_dssp SCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTT-CCEEEECCTTSCTTHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcC-CCEEEEECCCChHHHHHHHHHH
Confidence 358899999999998 69999999999999999998 9999999999999999999885
No 34
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.46 E-value=2.8e-15 Score=130.11 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=56.0
Q ss_pred CccccCC--CCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 2 AEWVKFN--IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 2 ~~f~~l~--l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
++|++|+ |++++.+++++.||..|+|+|.++++.++.+ ++++++++||+|||+++.++++..+.
T Consensus 1 m~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~-~~~lv~apTGsGKT~~~~l~il~~~~ 66 (702)
T 2p6r_A 1 MKVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSG-KNLLLAMPTAAGKTLLAEMAMVREAI 66 (702)
T ss_dssp CCSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTC-SCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CchhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCC-CcEEEEcCCccHHHHHHHHHHHHHHH
Confidence 5899999 9999999999999999999999999998877 99999999999999999998876644
No 35
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.44 E-value=1.3e-14 Score=121.79 Aligned_cols=63 Identities=21% Similarity=0.316 Sum_probs=40.9
Q ss_pred cccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHcc-CCcEEEEeecCCCcccccccchhhhhh
Q psy11948 4 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLA-RKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 4 f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~-~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
|...++++.+++.|.+.||..|+++|.++|+.++.+ +++++++++||+|||++|+++++..+.
T Consensus 121 ~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~ 184 (508)
T 3fho_A 121 XXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVD 184 (508)
T ss_dssp ------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSC
T ss_pred ccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHH
Confidence 455678899999999999999999999999999986 689999999999999999999887654
No 36
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.39 E-value=1e-13 Score=112.92 Aligned_cols=51 Identities=24% Similarity=0.095 Sum_probs=42.6
Q ss_pred HHHHHHHHH-CCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhh
Q psy11948 11 ETIIRALYQ-KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63 (167)
Q Consensus 11 ~~l~~~l~~-~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~ 63 (167)
+.+.+.+++ .|| .|+|+|.++||.++.| +|++++++||+|||++|++|++.
T Consensus 8 ~~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~-~~~lv~apTGsGKT~~~l~~~~~ 59 (414)
T 3oiy_A 8 EDFRSFFKKKFGK-DLTGYQRLWAKRIVQG-KSFTMVAPTGVGKTTFGMMTALW 59 (414)
T ss_dssp HHHHHHHHHHHSS-CCCHHHHHHHHHHTTT-CCEECCSCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCHHHHHHHHHHhcC-CCEEEEeCCCCCHHHHHHHHHHH
Confidence 345556665 466 8999999999999998 89999999999999988888754
No 37
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.33 E-value=3.8e-13 Score=117.84 Aligned_cols=41 Identities=29% Similarity=0.379 Sum_probs=37.3
Q ss_pred HCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhh
Q psy11948 19 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63 (167)
Q Consensus 19 ~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~ 63 (167)
..|| .||+||..++|.++.| + |+.++||+|||++|.+|++.
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G-~--Iaea~TGeGKTlaf~LP~~l 119 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDG-N--IAEMKTGEGKTLTSTLPVYL 119 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTT-S--EEECCTTSCHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCC-C--EEEccCCcHHHHHHHHHHHH
Confidence 5799 9999999999999998 5 89999999999999999863
No 38
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.31 E-value=4.6e-14 Score=121.22 Aligned_cols=58 Identities=12% Similarity=-0.010 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 7 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 7 l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
+++++.++++|... ...|+|+|+.++|.++.| +|++++++||||||++|++|++..+.
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g-~dvlv~a~TGSGKT~~~~lpil~~l~ 212 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKK-RLTIMDLHPGAGKTKRILPSIVREAL 212 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTT-CEEEECCCTTSSTTTTHHHHHHHHHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcC-CeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 56777766666654 589999999999888888 99999999999999999999987765
No 39
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.29 E-value=1.7e-12 Score=117.32 Aligned_cols=59 Identities=25% Similarity=0.260 Sum_probs=46.0
Q ss_pred cccCCCCHHHH-----HHHH-HCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 4 WVKFNIPETII-----RALY-QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 4 f~~l~l~~~l~-----~~l~-~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
|..+++++.+. +.+. ..||. | ++|.++||.++.| +|++++++||||||+ |.+|++..+.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~g~~-p-~iQ~~ai~~il~g-~dvlv~apTGSGKTl-~~lp~l~~~~ 96 (1054)
T 1gku_B 32 ASLCLFPEDFLLKEFVEFFRKCVGEP-R-AIQKMWAKRILRK-ESFAATAPTGVGKTS-FGLAMSLFLA 96 (1054)
T ss_dssp CCCSCCTTHHHHHHHHHHHHTTTCSC-C-HHHHHHHHHHHTT-CCEECCCCBTSCSHH-HHHHHHHHHH
T ss_pred ccccccccccchHHHHHHHHHhcCCC-H-HHHHHHHHHHHhC-CCEEEEcCCCCCHHH-HHHHHHHHHh
Confidence 44455544332 4444 58999 9 9999999999988 999999999999998 8888876554
No 40
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.27 E-value=4.2e-13 Score=121.68 Aligned_cols=62 Identities=16% Similarity=0.061 Sum_probs=54.5
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhh
Q psy11948 3 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65 (167)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~ 65 (167)
.|..+++++.+...+...++..|+++|.++|+.++.| +|++++++||||||++|.+|++..+
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g-~dvLV~ApTGSGKTlva~l~i~~~l 224 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRG-ESVLVSAHTSAGKTVVAEYAIAQSL 224 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTT-CCEEEECCSSSHHHHHHHHHHHHHH
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcC-CCEEEECCCCCChHHHHHHHHHHHH
Confidence 5777888888888888888889999999999999888 9999999999999999999887654
No 41
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.26 E-value=1.5e-12 Score=122.03 Aligned_cols=58 Identities=28% Similarity=0.403 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 9 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 9 l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
|++...++|...+|..++|+|.++|+.++.++.+++++||||||||+++.+|++..+.
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~ 968 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLL 968 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHH
Confidence 4567788899999999999999999999988789999999999999999999987765
No 42
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.26 E-value=2e-12 Score=111.60 Aligned_cols=52 Identities=19% Similarity=0.107 Sum_probs=42.7
Q ss_pred HHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 14 IRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 14 ~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
..+|..+||..|+++|.++++.++.| +|++++++||+|||++|.+|++..+.
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g-~~~iv~~~TGsGKTl~~~~~i~~~l~ 54 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKG-KNTIICAPTGCGKTFVSLLICEHHLK 54 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHHHHHHHH
Confidence 45688899999999999999999988 99999999999999999999887654
No 43
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.25 E-value=3.3e-12 Score=115.80 Aligned_cols=44 Identities=25% Similarity=0.080 Sum_probs=38.6
Q ss_pred HCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhh
Q psy11948 19 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTG 64 (167)
Q Consensus 19 ~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~ 64 (167)
..|| .|||+|.++||.++.| +|++++++||||||++|+++++..
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g-~dvlv~ApTGSGKTl~~l~~il~~ 117 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQG-KSFTMVAPTGVGKTTFGMMTALWL 117 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTT-CCEEECCSTTCCHHHHHHHHHHHH
T ss_pred hcCC-CCCHHHHHHHHHHHcC-CCEEEEeCCCCcHHHHHHHHHHHH
Confidence 4688 6999999999999998 999999999999999777776543
No 44
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.24 E-value=6e-13 Score=110.20 Aligned_cols=44 Identities=18% Similarity=0.123 Sum_probs=38.0
Q ss_pred CCCCCchHHHhHHHHHHccCCcE-EEEeecCCCcccccccchhhhhh
Q psy11948 21 GFKTPTKIQSMVMPSALLARKDI-VGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 21 g~~~pt~iQ~~~ip~~l~~~~d~-i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
|+..|+|+|+ +||.++.+ +|+ +++++||||||++|++|++....
T Consensus 1 G~~q~~~iq~-~i~~~l~~-~~~~lv~a~TGsGKT~~~~~~~l~~~~ 45 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRK-KRLTIMDLHPGAGKTKRILPSIVREAL 45 (451)
T ss_dssp CCCCCSCCCC-CCGGGGST-TCEEEECCCTTSSCCTTHHHHHHHHHH
T ss_pred CCCCCCCcHH-HHHHHHhc-CCeEEEECCCCCCHhhHHHHHHHHHHH
Confidence 7889999985 79999999 555 99999999999999999886544
No 45
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.21 E-value=5.7e-12 Score=105.46 Aligned_cols=46 Identities=24% Similarity=0.133 Sum_probs=38.1
Q ss_pred CCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 20 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 20 ~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
++...|+|+|.++|+.++.| +|++++++||+|||++|++|++..+.
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~-~~~l~~~~tGsGKT~~~~~~~~~~~~ 48 (556)
T 4a2p_A 3 METKKARSYQIELAQPAING-KNALICAPTGSGKTFVSILICEHHFQ 48 (556)
T ss_dssp -----CCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHHHHHH
Confidence 34568999999999999998 89999999999999999999877665
No 46
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.20 E-value=7.1e-12 Score=104.60 Aligned_cols=42 Identities=24% Similarity=0.177 Sum_probs=39.0
Q ss_pred CCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 24 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 24 ~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
.|+|+|.++++.++.| +|++++++||+|||++|++|++..+.
T Consensus 4 ~~~~~Q~~~i~~~~~~-~~~l~~~~tGsGKT~~~~~~~~~~~~ 45 (555)
T 3tbk_A 4 KPRNYQLELALPAKKG-KNTIICAPTGCGKTFVSLLICEHHLK 45 (555)
T ss_dssp CCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCC-CCEEEEeCCCChHHHHHHHHHHHHHH
Confidence 7999999999999988 89999999999999999999987765
No 47
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.18 E-value=2.4e-13 Score=117.69 Aligned_cols=50 Identities=24% Similarity=0.250 Sum_probs=38.9
Q ss_pred HHHHCCCC-----CCchHHH-----hHHHHHH------ccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 16 ALYQKGFK-----TPTKIQS-----MVMPSAL------LARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 16 ~l~~~g~~-----~pt~iQ~-----~~ip~~l------~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
+|..+||. .||++|+ ++||.++ .+ +|++++++||||||++|++|++..+.
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g-~dvlv~apTGSGKTl~~ll~il~~l~ 267 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKR-QLTVLDLHPGAGKTRRILPQIIKDAI 267 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTT-CEEEECCCTTTTTTTTHHHHHHHHHH
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcC-CeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 45566777 9999999 9999877 66 89999999999999999888876544
No 48
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.16 E-value=1.7e-11 Score=115.15 Aligned_cols=47 Identities=36% Similarity=0.417 Sum_probs=43.7
Q ss_pred CCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhhc
Q psy11948 21 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67 (167)
Q Consensus 21 g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~~ 67 (167)
||+.++++|.+++|.++..+.+++++||||||||+++.++++..+.+
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~ 122 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGK 122 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGG
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHh
Confidence 89999999999999999776999999999999999999999988874
No 49
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.15 E-value=1.6e-11 Score=108.08 Aligned_cols=47 Identities=23% Similarity=0.115 Sum_probs=39.3
Q ss_pred HCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 19 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 19 ~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
..|+..|+|+|.++|+.++.| +|++++++||+|||++|++|++..+.
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~-~~~ll~~~TGsGKTl~~~~~i~~~l~ 289 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAING-KNALICAPTGSGKTFVSILICEHHFQ 289 (797)
T ss_dssp -----CCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhC-CCEEEEeCCCChHHHHHHHHHHHHHH
Confidence 457999999999999999988 99999999999999999999887665
No 50
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.15 E-value=6.9e-12 Score=109.83 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=35.6
Q ss_pred CCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhh
Q psy11948 20 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTG 64 (167)
Q Consensus 20 ~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~ 64 (167)
.|. .||+||..++|.++.| + |+.++||+|||++|.+|++..
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G-~--Iaem~TGsGKTlaf~LP~l~~ 111 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNER-C--IAEMRTGEGKTLTATLPAYLN 111 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSS-E--EEECCTTSCHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCC-e--eeeecCCchHHHHHHHHHHHH
Confidence 454 9999999999999988 4 899999999999999998743
No 51
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.10 E-value=4.3e-11 Score=105.13 Aligned_cols=54 Identities=19% Similarity=0.132 Sum_probs=42.6
Q ss_pred HHHHHHHHHCCCCCCchHHHhHHHHHHcc-----CCcEEEEeecCCCcccccccchhhhh
Q psy11948 11 ETIIRALYQKGFKTPTKIQSMVMPSALLA-----RKDIVGAAETGSGKTLAFGIPILTGI 65 (167)
Q Consensus 11 ~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~-----~~d~i~~a~tgsGKt~~~~lp~l~~~ 65 (167)
+.+.+.+...+| .||++|.++|+.++.+ .++++++++||||||++|++|++..+
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l 414 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNY 414 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHH
Confidence 445555678999 9999999999998865 14788888888888888888876543
No 52
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.10 E-value=1.9e-11 Score=90.42 Aligned_cols=47 Identities=26% Similarity=0.080 Sum_probs=40.7
Q ss_pred HCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 19 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 19 ~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
......|+++|.++++.++.+ +++++.++||+|||++++++++..+.
T Consensus 28 ~~~~~~l~~~Q~~~i~~~~~~-~~~li~~~tGsGKT~~~~~~~~~~~~ 74 (216)
T 3b6e_A 28 PEPELQLRPYQMEVAQPALEG-KNIIICLPTGSGKTRVAVYIAKDHLD 74 (216)
T ss_dssp CSCCCCCCHHHHHHHHHHHTT-CCEEEECSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCchHHHHHHHHHHhcC-CCEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 445669999999999999988 89999999999999999888876544
No 53
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.07 E-value=4.5e-11 Score=105.17 Aligned_cols=42 Identities=29% Similarity=0.347 Sum_probs=37.0
Q ss_pred HCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhh
Q psy11948 19 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTG 64 (167)
Q Consensus 19 ~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~ 64 (167)
..|+ .||+||..++|.++.| + |+.++||+|||++|.+|++..
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G-~--Iaem~TGeGKTLa~~LP~~l~ 148 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLG-N--VAEMKTGEGKTLTCVLPAYLN 148 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTT-E--EEECCTTSCHHHHTHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcC-C--EEEecCCCccHHHHHHHHHHH
Confidence 4688 9999999999999988 4 899999999999999998643
No 54
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.07 E-value=5.4e-11 Score=106.43 Aligned_cols=47 Identities=23% Similarity=0.115 Sum_probs=38.9
Q ss_pred HCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 19 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 19 ~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
-.|+..|+++|.++|+.++.| +|++++++||+|||++|++|++..+.
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g-~~~ll~a~TGsGKTl~~~~~i~~~l~ 289 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAING-KNALICAPTGSGKTFVSILICEHHFQ 289 (936)
T ss_dssp -----CCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHTTTT
T ss_pred ccCCCCCCHHHHHHHHHHHcC-CCEEEEeCCCchHHHHHHHHHHHHHH
Confidence 457889999999999999998 99999999999999999999876654
No 55
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.06 E-value=8.2e-11 Score=103.38 Aligned_cols=58 Identities=22% Similarity=0.233 Sum_probs=52.2
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchh
Q psy11948 2 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62 (167)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l 62 (167)
..|.++++++.+.+.+...+ ..|+++|+.+|+.++.++.+++++++||+|||+ .+|.+
T Consensus 72 ~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~l 129 (773)
T 2xau_A 72 NPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQF 129 (773)
T ss_dssp CTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHH
T ss_pred CCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHH
Confidence 57999999999999999888 799999999999999886889999999999998 45554
No 56
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.03 E-value=5.5e-11 Score=104.70 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=36.3
Q ss_pred HCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhh
Q psy11948 19 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63 (167)
Q Consensus 19 ~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~ 63 (167)
-.|+ .||+||..++|.++.| + |+.+.||+|||++|.+|++.
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG-~--IaeakTGeGKTLvf~Lp~~L 115 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEG-K--IAEMKTGEGKTLVATLAVAL 115 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTT-S--EEECCSTHHHHHHHHHHHHH
T ss_pred HhCC-CCcHHHHhhcccccCC-c--eeeccCCCchHHHHHHHHHH
Confidence 3699 9999999999999988 4 88999999999999888854
No 57
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=98.98 E-value=1.8e-10 Score=103.65 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=40.0
Q ss_pred HHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhh
Q psy11948 17 LYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65 (167)
Q Consensus 17 l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~ 65 (167)
....+|. |+++|.++|+.+..| ++++++++||+|||++|.++++..+
T Consensus 80 ~~~~~f~-L~~~Q~eai~~l~~g-~~vLV~apTGSGKTlva~lai~~~l 126 (1010)
T 2xgj_A 80 ARTYPFT-LDPFQDTAISCIDRG-ESVLVSAHTSAGKTVVAEYAIAQSL 126 (1010)
T ss_dssp SCCCSSC-CCHHHHHHHHHHHHT-CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHhCCCC-CCHHHHHHHHHHHcC-CCEEEECCCCCChHHHHHHHHHHHh
Confidence 3455775 999999999999988 9999999999999999988776543
No 58
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.98 E-value=2.1e-10 Score=86.89 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=38.3
Q ss_pred CCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 21 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 21 g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
....++++|.++++.+..| ++++++++||||||..+.++++....
T Consensus 58 ~~~p~~~~q~~~i~~i~~g-~~~~i~g~TGsGKTt~~~~~~~~~~~ 102 (235)
T 3llm_A 58 ELLPVKKFESEILEAISQN-SVVIIRGATGCGKTTQVPQFILDDFI 102 (235)
T ss_dssp HTSGGGGGHHHHHHHHHHC-SEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHhcC-CEEEEEeCCCCCcHHhHHHHHhcchh
Confidence 3446789999999999988 99999999999999988887766544
No 59
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=98.92 E-value=5.7e-10 Score=100.38 Aligned_cols=43 Identities=21% Similarity=0.141 Sum_probs=37.7
Q ss_pred HCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhh
Q psy11948 19 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63 (167)
Q Consensus 19 ~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~ 63 (167)
..+| .|+++|.++|+.++.| +|++++++||+|||++|.+++..
T Consensus 35 ~~~f-~l~~~Q~~aI~~il~g-~~vlv~apTGsGKTlv~~~~i~~ 77 (997)
T 4a4z_A 35 SWPF-ELDTFQKEAVYHLEQG-DSVFVAAHTSAGKTVVAEYAIAM 77 (997)
T ss_dssp CCSS-CCCHHHHHHHHHHHTT-CEEEEECCTTSCSHHHHHHHHHH
T ss_pred hCCC-CCCHHHHHHHHHHHcC-CCEEEEECCCCcHHHHHHHHHHH
Confidence 3466 5899999999999998 99999999999999988887754
No 60
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=98.90 E-value=2.1e-10 Score=99.00 Aligned_cols=43 Identities=26% Similarity=0.105 Sum_probs=38.9
Q ss_pred CCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 23 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 23 ~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
-.|+|+|.++++.++.| +|++++++||+|||++|.+|++..+.
T Consensus 6 ~~l~~~Q~~~i~~il~g-~~~ll~~~TGsGKTl~~~~~i~~~l~ 48 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEG-KNIIICLPTGCGKTRVAVYIAKDHLD 48 (699)
T ss_dssp -CCCHHHHHHHHHHHSS-CCEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHhC-CCEEEEcCCCCcHHHHHHHHHHHHHH
Confidence 37999999999999998 89999999999999999999887665
No 61
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=98.89 E-value=2.7e-10 Score=94.47 Aligned_cols=33 Identities=30% Similarity=0.319 Sum_probs=24.0
Q ss_pred HHHHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 34 PSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 34 p~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
+.++.++++++++++||||||++|++|++..+.
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~ 47 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAI 47 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHH
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 344454488888888888888888888876544
No 62
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=98.88 E-value=5.7e-10 Score=93.01 Aligned_cols=42 Identities=14% Similarity=0.048 Sum_probs=37.0
Q ss_pred CCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhh
Q psy11948 22 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTG 64 (167)
Q Consensus 22 ~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~ 64 (167)
...|++.|..+++.++.+ ++++++++||+|||++++.++...
T Consensus 111 ~~~l~~~Q~~ai~~~~~~-~~~ll~~~tGsGKT~~~~~~~~~~ 152 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVN-RRRILNLPTSAGRSLIQALLARYY 152 (510)
T ss_dssp EECCCHHHHHHHHHHHHH-SEEEEECCSTTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHHHH
Confidence 348999999999999988 899999999999999998776544
No 63
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=98.87 E-value=2.2e-09 Score=97.86 Aligned_cols=56 Identities=18% Similarity=0.123 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHH-HCCCCCCchHHHhHHHHHHc----cC-CcEEEEeecCCCcccccccchhh
Q psy11948 7 FNIPETIIRALY-QKGFKTPTKIQSMVMPSALL----AR-KDIVGAAETGSGKTLAFGIPILT 63 (167)
Q Consensus 7 l~l~~~l~~~l~-~~g~~~pt~iQ~~~ip~~l~----~~-~d~i~~a~tgsGKt~~~~lp~l~ 63 (167)
++++....+.+. ..+|. |||+|.++|+.++. |. +|++++++||+|||++++++.+.
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~ 647 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL 647 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHH
Confidence 556777777765 56885 79999999999887 41 38999999999999888777654
No 64
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=98.86 E-value=7.2e-10 Score=85.98 Aligned_cols=39 Identities=15% Similarity=0.131 Sum_probs=33.5
Q ss_pred CCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhh
Q psy11948 24 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63 (167)
Q Consensus 24 ~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~ 63 (167)
.|+++|.++++.++.+ .+.+++++||+|||++++.++..
T Consensus 113 ~l~~~Q~~ai~~~l~~-~~~ll~~~tGsGKT~~~~~~~~~ 151 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVN-RRRILNLPTSAGRSLIQALLARY 151 (282)
T ss_dssp CCCHHHHHHHHHHHHH-SEEEECCCTTSCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhc-CCeEEEcCCCCCcHHHHHHHHHH
Confidence 8999999999999988 77888999999999988665543
No 65
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.78 E-value=3.5e-09 Score=87.42 Aligned_cols=38 Identities=26% Similarity=0.118 Sum_probs=33.8
Q ss_pred CCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchh
Q psy11948 24 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62 (167)
Q Consensus 24 ~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l 62 (167)
.|+|.|.++++.++.+ .+++++++||+|||+.++.++.
T Consensus 93 ~l~~~Q~~ai~~i~~~-~~~ll~~~TGsGKT~~~l~~i~ 130 (472)
T 2fwr_A 93 SLRDYQEKALERWLVD-KRGCIVLPTGSGKTHVAMAAIN 130 (472)
T ss_dssp CBCHHHHHHHHHHTTT-TEEEEECCTTSCHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhc-CCEEEEeCCCCCHHHHHHHHHH
Confidence 6899999999999888 7899999999999998877663
No 66
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.69 E-value=6.7e-09 Score=87.91 Aligned_cols=41 Identities=24% Similarity=0.028 Sum_probs=32.8
Q ss_pred CCCCCchHHHhHHHHH----HccCCcEEEEeecCCCcccccccchhh
Q psy11948 21 GFKTPTKIQSMVMPSA----LLARKDIVGAAETGSGKTLAFGIPILT 63 (167)
Q Consensus 21 g~~~pt~iQ~~~ip~~----l~~~~d~i~~a~tgsGKt~~~~lp~l~ 63 (167)
|| .|.|.|.+.+..+ ..| +|+++.++||+|||++|++|.+.
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~-~~~~~~a~TGtGKT~~~l~p~l~ 45 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNN-FLVALNAPTGSGKTLFSLLVSLE 45 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTT-CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHHHcC-CcEEEECCCCccHHHHHHHHHHh
Confidence 44 6899999977644 345 89999999999999999888864
No 67
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=98.67 E-value=8.8e-09 Score=83.73 Aligned_cols=39 Identities=21% Similarity=0.135 Sum_probs=34.5
Q ss_pred CCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhh
Q psy11948 24 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTG 64 (167)
Q Consensus 24 ~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~ 64 (167)
.|+|+|.++++.++.+ ++++.++||+|||+.++.+++..
T Consensus 9 ~l~~~Q~~~i~~~~~~--~~ll~~~tG~GKT~~~~~~~~~~ 47 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET--NCLIVLPTGLGKTLIAMMIAEYR 47 (494)
T ss_dssp CCCHHHHHHHHHGGGS--CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhhC--CEEEEcCCCCCHHHHHHHHHHHH
Confidence 6899999999998877 99999999999999888887654
No 68
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.66 E-value=1.3e-08 Score=86.54 Aligned_cols=43 Identities=23% Similarity=0.279 Sum_probs=32.2
Q ss_pred CCCchHHHhHHHHHHc----cCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 23 KTPTKIQSMVMPSALL----ARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 23 ~~pt~iQ~~~ip~~l~----~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
..|+++|..+|+.++. |.++++++++||+|||+++ ++++..+.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~-~~~~~~l~ 223 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVA-FQISWKLW 223 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHH-HHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHH-HHHHHHHH
Confidence 3799999999998876 5467899999999999984 34444433
No 69
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.66 E-value=2.1e-08 Score=76.13 Aligned_cols=37 Identities=27% Similarity=0.148 Sum_probs=32.4
Q ss_pred CCchHHHhHHHHHHccCCcEEEEeecCCCcccccccch
Q psy11948 24 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 61 (167)
Q Consensus 24 ~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~ 61 (167)
.|+++|.+++..++.+ .+++++++||+|||..++.++
T Consensus 93 ~l~~~Q~~ai~~~~~~-~~~ll~~~tG~GKT~~a~~~~ 129 (237)
T 2fz4_A 93 SLRDYQEKALERWLVD-KRGCIVLPTGSGKTHVAMAAI 129 (237)
T ss_dssp CCCHHHHHHHHHHTTT-SEEEEEESSSTTHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhC-CCEEEEeCCCCCHHHHHHHHH
Confidence 7899999999998888 789999999999998776554
No 70
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.61 E-value=1.1e-08 Score=86.43 Aligned_cols=41 Identities=20% Similarity=0.148 Sum_probs=29.9
Q ss_pred CCCCCCchHHHhHHHHH----HccCCcEEEEeecCCCcccccccchh
Q psy11948 20 KGFKTPTKIQSMVMPSA----LLARKDIVGAAETGSGKTLAFGIPIL 62 (167)
Q Consensus 20 ~g~~~pt~iQ~~~ip~~----l~~~~d~i~~a~tgsGKt~~~~lp~l 62 (167)
.|| .|+|+|.+++..+ ..| +++++.++||+|||++|++|.+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~-~~~~~~a~TGtGKT~~~l~~~~ 48 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHG-KTLLLNAKPGLGKTVFVEVLGM 48 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTT-CEEEEECCTTSCHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcC-CCEEEEcCCCCcHHHHHHHHHH
Confidence 467 8999999987543 455 8999999999999999988874
No 71
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.60 E-value=1.2e-08 Score=87.54 Aligned_cols=42 Identities=19% Similarity=0.048 Sum_probs=32.4
Q ss_pred CCchHHHhHHHH----HHccCCcEEEEeecCCCcccccccchhhhhh
Q psy11948 24 TPTKIQSMVMPS----ALLARKDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 24 ~pt~iQ~~~ip~----~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
.|.|.|.+.+.. +..| +++++.|+||+|||++|++|.+..+.
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~-~~~~~~apTGtGKT~a~l~p~l~~~~ 48 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKS-YGVALESPTGSGKTIMALKSALQYSS 48 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHS-SEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcC-CCEEEECCCCCCHHHHHHHHHHHhhh
Confidence 678899888753 3455 89999999999999999999887654
No 72
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=98.53 E-value=3.5e-09 Score=91.44 Aligned_cols=38 Identities=21% Similarity=0.116 Sum_probs=25.8
Q ss_pred CchHHHhHHHHHHccCCcEEEEeecCCCcccccccchh
Q psy11948 25 PTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62 (167)
Q Consensus 25 pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l 62 (167)
|...|++.|+..+.+++|++++++||||||.+|.+|++
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll 254 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYA 254 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHH
Confidence 44455555655555547888888888888877776664
No 73
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.32 E-value=2.5e-07 Score=83.55 Aligned_cols=35 Identities=26% Similarity=0.064 Sum_probs=25.2
Q ss_pred CCCchHHHhHHHHHHcc-------------CCcEEEEeecCCCccccc
Q psy11948 23 KTPTKIQSMVMPSALLA-------------RKDIVGAAETGSGKTLAF 57 (167)
Q Consensus 23 ~~pt~iQ~~~ip~~l~~-------------~~d~i~~a~tgsGKt~~~ 57 (167)
..|+|+|..+++.++.+ +++.++.++||||||+++
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~ 317 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS 317 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH
Confidence 36999999999998752 245666666666666654
No 74
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=98.13 E-value=6.1e-07 Score=77.77 Aligned_cols=14 Identities=21% Similarity=0.259 Sum_probs=12.0
Q ss_pred ceEEEccchhhhcC
Q psy11948 154 YALILAPTRELAIQ 167 (167)
Q Consensus 154 ~aLIl~PTRELa~Q 167 (167)
+++|++||||||.|
T Consensus 181 ~gl~l~PtR~LA~Q 194 (677)
T 3rc3_A 181 SGVYCGPLKLLAHE 194 (677)
T ss_dssp SEEEEESSHHHHHH
T ss_pred CeEEEeCHHHHHHH
Confidence 35999999999986
No 75
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.57 E-value=8.7e-05 Score=63.53 Aligned_cols=38 Identities=26% Similarity=0.217 Sum_probs=32.1
Q ss_pred chHHHhHHHHHHccCCcEEEEeecCCCcc--cccccchhhh
Q psy11948 26 TKIQSMVMPSALLARKDIVGAAETGSGKT--LAFGIPILTG 64 (167)
Q Consensus 26 t~iQ~~~ip~~l~~~~d~i~~a~tgsGKt--~~~~lp~l~~ 64 (167)
++.|+.+++.++.+ +++++.+++|+||| .+++++.+..
T Consensus 151 ~~~Q~~Ai~~~l~~-~~~vi~G~pGTGKTt~l~~ll~~l~~ 190 (608)
T 1w36_D 151 INWQKVAAAVALTR-RISVISGGPGTGKTTTVAKLLAALIQ 190 (608)
T ss_dssp CCHHHHHHHHHHTB-SEEEEECCTTSTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcC-CCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 78999999999987 89999999999999 5565666543
No 76
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=97.35 E-value=0.0001 Score=64.25 Aligned_cols=41 Identities=37% Similarity=0.429 Sum_probs=32.5
Q ss_pred CCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhh
Q psy11948 20 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTG 64 (167)
Q Consensus 20 ~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~ 64 (167)
.|. .|+++|...--.+..| + |+...||+|||+++.+|++-.
T Consensus 72 lg~-r~~dvQligg~~L~~G-~--iaEM~TGEGKTLva~lp~~ln 112 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEG-K--VAEMKTGEGKTLAATMPIYLN 112 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTT-C--EEECCTTSCHHHHTHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHhCC-C--hhhccCCCCccHHHHHHHHHH
Confidence 465 7999999998777766 3 788889999998888887543
No 77
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=97.30 E-value=3.3e-05 Score=60.33 Aligned_cols=69 Identities=30% Similarity=0.537 Sum_probs=55.6
Q ss_pred chhhhhhc-ccCCCCcccccc----ccc--cceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHH
Q psy11948 60 PILTGIVN-KLENPTEEDEND----SAR--KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVL 132 (167)
Q Consensus 60 p~l~~~~~-~~~~~~~~~~~~----~~~--~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (167)
.++..+.. ++..|+..|... ..+ +|+++.++||+|||++|++|+++.+..
T Consensus 102 ~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~----------------------- 158 (300)
T 3fmo_B 102 QLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP----------------------- 158 (300)
T ss_dssp HHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCT-----------------------
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhc-----------------------
Confidence 34444444 888999999665 344 999999999999999999999987742
Q ss_pred HHHHHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 133 EELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 133 e~~~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
....+++|||+||||||.|
T Consensus 159 ----------------~~~~~~~lil~PtreLa~Q 177 (300)
T 3fmo_B 159 ----------------ANKYPQCLCLSPTYELALQ 177 (300)
T ss_dssp ----------------TSCSCCEEEECSSHHHHHH
T ss_pred ----------------cCCCceEEEEcCcHHHHHH
Confidence 2346789999999999987
No 78
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=97.28 E-value=3.6e-05 Score=57.92 Aligned_cols=73 Identities=36% Similarity=0.505 Sum_probs=56.4
Q ss_pred hhhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHH
Q psy11948 61 ILTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 135 (167)
Q Consensus 61 ~l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 135 (167)
++..+.. ++..|+..|... ..++|+++.++||+|||++|++|++..+......
T Consensus 40 l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~---------------------- 97 (242)
T 3fe2_A 40 VMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFL---------------------- 97 (242)
T ss_dssp HHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCC----------------------
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhcccc----------------------
Confidence 4444444 778899888665 5779999999999999999999999887632211
Q ss_pred HHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 136 EEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
.....+++|||+||||||.|
T Consensus 98 ------------~~~~~~~~lil~Pt~~L~~Q 117 (242)
T 3fe2_A 98 ------------ERGDGPICLVLAPTRELAQQ 117 (242)
T ss_dssp ------------CTTCCCSEEEECSSHHHHHH
T ss_pred ------------ccCCCCEEEEEeCcHHHHHH
Confidence 12346789999999999986
No 79
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=97.28 E-value=3.6e-05 Score=57.21 Aligned_cols=74 Identities=31% Similarity=0.479 Sum_probs=53.9
Q ss_pred hhhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHH
Q psy11948 61 ILTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 135 (167)
Q Consensus 61 ~l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 135 (167)
++..+.. ++..|+..|... ..++|+++.++||+|||++|++|++..+......
T Consensus 31 l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~---------------------- 88 (228)
T 3iuy_A 31 LLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS---------------------- 88 (228)
T ss_dssp HHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------------------------
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccch----------------------
Confidence 3344444 777888888665 5789999999999999999999999877532111
Q ss_pred HHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 136 EEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
......+++|||+||||||.|
T Consensus 89 -----------~~~~~~~~~lil~Pt~~L~~q 109 (228)
T 3iuy_A 89 -----------REQRNGPGMLVLTPTRELALH 109 (228)
T ss_dssp ---------------CCCSEEEECSSHHHHHH
T ss_pred -----------hhccCCCcEEEEeCCHHHHHH
Confidence 012356789999999999976
No 80
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=97.26 E-value=0.00015 Score=59.94 Aligned_cols=35 Identities=23% Similarity=0.031 Sum_probs=27.9
Q ss_pred CCCchHHHhHHHHHH---ccCCcEEEEeecCCCccccc
Q psy11948 23 KTPTKIQSMVMPSAL---LARKDIVGAAETGSGKTLAF 57 (167)
Q Consensus 23 ~~pt~iQ~~~ip~~l---~~~~d~i~~a~tgsGKt~~~ 57 (167)
..|.|+|.+++..+. ..+.++++..+||+|||+..
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~a 73 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQT 73 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHH
Confidence 368999999997663 23378899999999999874
No 81
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=97.18 E-value=5.1e-05 Score=62.07 Aligned_cols=73 Identities=36% Similarity=0.545 Sum_probs=57.8
Q ss_pred hhhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHH
Q psy11948 61 ILTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 135 (167)
Q Consensus 61 ~l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 135 (167)
++..+.. ++..|+..|..+ ..++|++++++||+|||++|++|++..++.....
T Consensus 67 l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~---------------------- 124 (434)
T 2db3_A 67 IIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE---------------------- 124 (434)
T ss_dssp HHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC----------------------
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc----------------------
Confidence 3334433 888999999765 6789999999999999999999999988743211
Q ss_pred HHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 136 EEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
.....+++|||+||||||.|
T Consensus 125 ------------~~~~~~~~lil~PtreLa~Q 144 (434)
T 2db3_A 125 ------------LELGRPQVVIVSPTRELAIQ 144 (434)
T ss_dssp ------------CCTTCCSEEEECSSHHHHHH
T ss_pred ------------cccCCccEEEEecCHHHHHH
Confidence 12346899999999999987
No 82
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=97.17 E-value=0.0001 Score=60.54 Aligned_cols=31 Identities=26% Similarity=0.154 Sum_probs=26.7
Q ss_pred HHccCCcEEEEeecCCCcccccccchhhhhhc
Q psy11948 36 ALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67 (167)
Q Consensus 36 ~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~~ 67 (167)
++.| +|++++++||||||++|++|++..+..
T Consensus 5 l~~g-~~vlv~a~TGSGKT~~~l~~~l~~~~~ 35 (440)
T 1yks_A 5 LKKG-MTTVLDFHPGAGKTRRFLPQILAECAR 35 (440)
T ss_dssp TSTT-CEEEECCCTTSSTTTTHHHHHHHHHHH
T ss_pred hhCC-CCEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 3455 999999999999999999999987654
No 83
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=97.11 E-value=0.00023 Score=64.00 Aligned_cols=39 Identities=21% Similarity=0.175 Sum_probs=29.8
Q ss_pred CCCchHHHhHHHHHHcc-CCcEEEEeecCCCcccccccch
Q psy11948 23 KTPTKIQSMVMPSALLA-RKDIVGAAETGSGKTLAFGIPI 61 (167)
Q Consensus 23 ~~pt~iQ~~~ip~~l~~-~~d~i~~a~tgsGKt~~~~lp~ 61 (167)
..|+|.|..++..++.. ...++++.+||+|||+.++..+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i 191 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMIL 191 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHH
Confidence 47899999999887754 2478888888888888765444
No 84
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=97.11 E-value=5.1e-05 Score=58.00 Aligned_cols=72 Identities=46% Similarity=0.535 Sum_probs=55.1
Q ss_pred hhhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHH
Q psy11948 61 ILTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 135 (167)
Q Consensus 61 ~l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 135 (167)
++..+.. ++..++..|... ..++|++++++||+|||++|++|++..+.....
T Consensus 65 l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~----------------------- 121 (262)
T 3ly5_A 65 TLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRF----------------------- 121 (262)
T ss_dssp HHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTC-----------------------
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccc-----------------------
Confidence 3334433 777888888665 567999999999999999999999988763211
Q ss_pred HHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 136 EEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
......++|||+||||||.|
T Consensus 122 ------------~~~~~~~~lil~Pt~~La~q 141 (262)
T 3ly5_A 122 ------------MPRNGTGVLILSPTRELAMQ 141 (262)
T ss_dssp ------------CGGGCCCEEEECSSHHHHHH
T ss_pred ------------cccCCceEEEEeCCHHHHHH
Confidence 11245789999999999986
No 85
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=97.08 E-value=7.3e-05 Score=56.12 Aligned_cols=69 Identities=41% Similarity=0.623 Sum_probs=54.4
Q ss_pred hhhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHH
Q psy11948 61 ILTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 135 (167)
Q Consensus 61 ~l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 135 (167)
++..+.. ++..|+..|... ..++|+++.++||+|||++|++|++..+..
T Consensus 40 l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~-------------------------- 93 (245)
T 3dkp_A 40 LLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQ-------------------------- 93 (245)
T ss_dssp HHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCS--------------------------
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhh--------------------------
Confidence 3344444 777888888665 568999999999999999999999987742
Q ss_pred HHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 136 EEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
.....+++|||+||||||.|
T Consensus 94 ------------~~~~~~~~lil~Pt~~L~~q 113 (245)
T 3dkp_A 94 ------------PANKGFRALIISPTRELASQ 113 (245)
T ss_dssp ------------CCSSSCCEEEECSSHHHHHH
T ss_pred ------------cccCCceEEEEeCCHHHHHH
Confidence 11345789999999999986
No 86
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=96.93 E-value=0.00011 Score=54.74 Aligned_cols=65 Identities=43% Similarity=0.572 Sum_probs=52.1
Q ss_pred ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcch
Q psy11948 68 KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 143 (167)
Q Consensus 68 ~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 143 (167)
++..++..|... ..++|+++.++||+|||++|++|+++.+.....
T Consensus 44 ~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~------------------------------- 92 (236)
T 2pl3_A 44 QYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW------------------------------- 92 (236)
T ss_dssp TCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC-------------------------------
T ss_pred CCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc-------------------------------
Confidence 677888888654 567999999999999999999999988763211
Q ss_pred hhhhccccccceEEEccchhhhcC
Q psy11948 144 EFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 144 ~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
.....+++|||+|||+||.|
T Consensus 93 ----~~~~~~~~lil~Pt~~L~~q 112 (236)
T 2pl3_A 93 ----TSTDGLGVLIISPTRELAYQ 112 (236)
T ss_dssp ----CGGGCCCEEEECSSHHHHHH
T ss_pred ----cccCCceEEEEeCCHHHHHH
Confidence 12345789999999999986
No 87
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=96.91 E-value=0.00037 Score=57.08 Aligned_cols=27 Identities=22% Similarity=0.147 Sum_probs=24.1
Q ss_pred CcEEEEeecCCCcccccccchhhhhhc
Q psy11948 41 KDIVGAAETGSGKTLAFGIPILTGIVN 67 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~~lp~l~~~~~ 67 (167)
++++++++||||||++|++|++..+..
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~ 29 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVK 29 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 899999999999999999999866553
No 88
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=96.90 E-value=0.00013 Score=54.99 Aligned_cols=77 Identities=43% Similarity=0.519 Sum_probs=55.5
Q ss_pred hhhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHH
Q psy11948 61 ILTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 135 (167)
Q Consensus 61 ~l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 135 (167)
++..+.. ++..++..|... ..++|+++.++||+|||++|++|++..+........
T Consensus 34 l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~-------------------- 93 (253)
T 1wrb_A 34 IRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQ-------------------- 93 (253)
T ss_dssp TTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC-----------------------
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccc--------------------
Confidence 3333433 677888888655 567999999999999999999999988764321100
Q ss_pred HHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 136 EEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
.......+++|||+||||||.|
T Consensus 94 ----------~~~~~~~~~~lil~Pt~~L~~q 115 (253)
T 1wrb_A 94 ----------RYSKTAYPKCLILAPTRELAIQ 115 (253)
T ss_dssp -------------CCBCCSEEEECSSHHHHHH
T ss_pred ----------cccccCCceEEEEECCHHHHHH
Confidence 0012345799999999999987
No 89
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=96.89 E-value=0.00016 Score=52.62 Aligned_cols=61 Identities=34% Similarity=0.603 Sum_probs=50.0
Q ss_pred ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcch
Q psy11948 68 KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 143 (167)
Q Consensus 68 ~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 143 (167)
++..++..|... ..++|+++.++||+|||++|++|++..+..
T Consensus 22 g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~---------------------------------- 67 (206)
T 1vec_A 22 GWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL---------------------------------- 67 (206)
T ss_dssp TCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT----------------------------------
T ss_pred CCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcc----------------------------------
Confidence 667788887654 567899999999999999999999877642
Q ss_pred hhhhccccccceEEEccchhhhcC
Q psy11948 144 EFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 144 ~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
....+++|||+|||+|+.|
T Consensus 68 -----~~~~~~~lil~Pt~~L~~q 86 (206)
T 1vec_A 68 -----KKDNIQAMVIVPTRELALQ 86 (206)
T ss_dssp -----TSCSCCEEEECSCHHHHHH
T ss_pred -----cCCCeeEEEEeCcHHHHHH
Confidence 2345789999999999976
No 90
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=96.83 E-value=0.00015 Score=53.97 Aligned_cols=68 Identities=34% Similarity=0.495 Sum_probs=53.6
Q ss_pred hhhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHH
Q psy11948 61 ILTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 135 (167)
Q Consensus 61 ~l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 135 (167)
++..+.. ++..++..|... ..++|+++.++||+|||++|++|++..+..
T Consensus 35 l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~-------------------------- 88 (230)
T 2oxc_A 35 VLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVL-------------------------- 88 (230)
T ss_dssp HHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT--------------------------
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh--------------------------
Confidence 3344433 777788888655 567999999999999999999999987752
Q ss_pred HHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 136 EEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
.....++|||+||||||.|
T Consensus 89 -------------~~~~~~~lil~Pt~~L~~q 107 (230)
T 2oxc_A 89 -------------ENLSTQILILAPTREIAVQ 107 (230)
T ss_dssp -------------TSCSCCEEEECSSHHHHHH
T ss_pred -------------cCCCceEEEEeCCHHHHHH
Confidence 1234689999999999986
No 91
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=96.73 E-value=0.00021 Score=54.12 Aligned_cols=61 Identities=49% Similarity=0.763 Sum_probs=51.4
Q ss_pred ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcch
Q psy11948 68 KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 143 (167)
Q Consensus 68 ~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 143 (167)
++..++..|... ..++|+++.++||+|||++|++|++..+..
T Consensus 62 g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~---------------------------------- 107 (249)
T 3ber_A 62 GWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLE---------------------------------- 107 (249)
T ss_dssp TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHH----------------------------------
T ss_pred CCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhc----------------------------------
Confidence 777888888665 567999999999999999999999987752
Q ss_pred hhhhccccccceEEEccchhhhcC
Q psy11948 144 EFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 144 ~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
....+++|||+||||||.|
T Consensus 108 -----~~~~~~~lil~Ptr~L~~q 126 (249)
T 3ber_A 108 -----TPQRLFALVLTPTRELAFQ 126 (249)
T ss_dssp -----SCCSSCEEEECSSHHHHHH
T ss_pred -----CCCCceEEEEeCCHHHHHH
Confidence 2345789999999999976
No 92
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=96.73 E-value=0.00022 Score=57.22 Aligned_cols=79 Identities=35% Similarity=0.558 Sum_probs=54.4
Q ss_pred ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcch
Q psy11948 68 KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 143 (167)
Q Consensus 68 ~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 143 (167)
++..|+..|... ..++|+++.++||+|||++|++|++..+........ .......
T Consensus 34 ~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~----------------~~~~~~~----- 92 (417)
T 2i4i_A 34 RYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEA----------------LRAMKEN----- 92 (417)
T ss_dssp TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHH----------------HHHHHHC-----
T ss_pred CCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccch----------------hhccccc-----
Confidence 788899988665 568999999999999999999999988764321100 0000000
Q ss_pred hhhhccccccceEEEccchhhhcC
Q psy11948 144 EFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 144 ~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
.........+++|||+||||||.|
T Consensus 93 ~~~~~~~~~~~~lil~Pt~~L~~q 116 (417)
T 2i4i_A 93 GRYGRRKQYPISLVLAPTRELAVQ 116 (417)
T ss_dssp BTTBSCSBCCSEEEECSSHHHHHH
T ss_pred cccccccCCccEEEECCcHHHHHH
Confidence 000122345789999999999986
No 93
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.70 E-value=0.00023 Score=51.77 Aligned_cols=64 Identities=44% Similarity=0.644 Sum_probs=50.7
Q ss_pred ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcch
Q psy11948 68 KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 143 (167)
Q Consensus 68 ~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 143 (167)
++..++..|... ..++|+++.++||+|||.+|++|++..+....
T Consensus 20 ~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~-------------------------------- 67 (207)
T 2gxq_A 20 GLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ-------------------------------- 67 (207)
T ss_dssp TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC--------------------------------
T ss_pred CCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc--------------------------------
Confidence 666777777554 56789999999999999999999998775311
Q ss_pred hhhhccccccceEEEccchhhhcC
Q psy11948 144 EFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 144 ~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
.....+++||++|||+|+.|
T Consensus 68 ----~~~~~~~~lil~P~~~L~~q 87 (207)
T 2gxq_A 68 ----ERGRKPRALVLTPTRELALQ 87 (207)
T ss_dssp ----CTTCCCSEEEECSSHHHHHH
T ss_pred ----ccCCCCcEEEEECCHHHHHH
Confidence 11345789999999999976
No 94
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=96.66 E-value=0.00016 Score=54.12 Aligned_cols=68 Identities=38% Similarity=0.567 Sum_probs=53.7
Q ss_pred hhhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHH
Q psy11948 61 ILTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 135 (167)
Q Consensus 61 ~l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 135 (167)
++..+.. ++..++..|... ..++|+++.++||+|||++|++|++..+..
T Consensus 41 l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~-------------------------- 94 (237)
T 3bor_A 41 LLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEI-------------------------- 94 (237)
T ss_dssp HHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCT--------------------------
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh--------------------------
Confidence 3444434 777888888655 567899999999999999999999987642
Q ss_pred HHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 136 EEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
.....++|||+||||||.|
T Consensus 95 -------------~~~~~~~lil~Pt~~L~~q 113 (237)
T 3bor_A 95 -------------EFKETQALVLAPTRELAQQ 113 (237)
T ss_dssp -------------TSCSCCEEEECSSHHHHHH
T ss_pred -------------cCCCceEEEEECcHHHHHH
Confidence 1234689999999999976
No 95
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=96.65 E-value=0.00017 Score=53.25 Aligned_cols=61 Identities=43% Similarity=0.608 Sum_probs=50.2
Q ss_pred ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcch
Q psy11948 68 KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 143 (167)
Q Consensus 68 ~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 143 (167)
++..++..|... ..++|+++.++||+|||.+|++|++..+..
T Consensus 23 g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~---------------------------------- 68 (219)
T 1q0u_A 23 RFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP---------------------------------- 68 (219)
T ss_dssp TCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT----------------------------------
T ss_pred CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh----------------------------------
Confidence 667788887654 567999999999999999999999987742
Q ss_pred hhhhccccccceEEEccchhhhcC
Q psy11948 144 EFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 144 ~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
....+++|||+||||||.|
T Consensus 69 -----~~~~~~~lil~Pt~~L~~q 87 (219)
T 1q0u_A 69 -----ERAEVQAVITAPTRELATQ 87 (219)
T ss_dssp -----TSCSCCEEEECSSHHHHHH
T ss_pred -----CcCCceEEEEcCcHHHHHH
Confidence 1235789999999999976
No 96
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=96.62 E-value=0.00029 Score=59.10 Aligned_cols=71 Identities=34% Similarity=0.527 Sum_probs=55.1
Q ss_pred hhhhhc-ccCCCCcccccc----c--cccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHH
Q psy11948 62 LTGIVN-KLENPTEEDEND----S--ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEE 134 (167)
Q Consensus 62 l~~~~~-~~~~~~~~~~~~----~--~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 134 (167)
+..+.. ++..++..|... . .++|+++.++||+|||++|++|+++.+.....
T Consensus 84 ~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~---------------------- 141 (563)
T 3i5x_A 84 HKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF---------------------- 141 (563)
T ss_dssp HHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT----------------------
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccc----------------------
Confidence 333333 778899988665 2 57899999999999999999999988864321
Q ss_pred HHHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 135 LEEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
.....+++|||+||||||.|
T Consensus 142 -------------~~~~~~~~lil~Ptr~La~Q 161 (563)
T 3i5x_A 142 -------------DSQYMVKAVIVAPTRDLALQ 161 (563)
T ss_dssp -------------SSTTSCCEEEECSSHHHHHH
T ss_pred -------------cccCCeeEEEEcCcHHHHHH
Confidence 11245789999999999987
No 97
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.61 E-value=0.00029 Score=51.96 Aligned_cols=61 Identities=38% Similarity=0.554 Sum_probs=50.3
Q ss_pred ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcch
Q psy11948 68 KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 143 (167)
Q Consensus 68 ~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 143 (167)
++..++..|... ..++|+++.++||+|||.+|++|++..+..
T Consensus 33 g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~---------------------------------- 78 (224)
T 1qde_A 33 GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT---------------------------------- 78 (224)
T ss_dssp TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT----------------------------------
T ss_pred CCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhc----------------------------------
Confidence 677788888654 567899999999999999999999987742
Q ss_pred hhhhccccccceEEEccchhhhcC
Q psy11948 144 EFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 144 ~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
....+++|||+|||+||.|
T Consensus 79 -----~~~~~~~lil~Pt~~L~~q 97 (224)
T 1qde_A 79 -----SVKAPQALMLAPTRELALQ 97 (224)
T ss_dssp -----TCCSCCEEEECSSHHHHHH
T ss_pred -----cCCCceEEEEECCHHHHHH
Confidence 1345789999999999976
No 98
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=96.56 E-value=0.00033 Score=59.23 Aligned_cols=65 Identities=35% Similarity=0.560 Sum_probs=52.6
Q ss_pred ccCCCCcccccc----c--cccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhc
Q psy11948 68 KLENPTEEDEND----S--ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 141 (167)
Q Consensus 68 ~~~~~~~~~~~~----~--~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 141 (167)
++..++..|... . .++|+++.++||+|||++|++|+++.+.....
T Consensus 40 g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~----------------------------- 90 (579)
T 3sqw_A 40 EFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF----------------------------- 90 (579)
T ss_dssp TCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-----------------------------
T ss_pred CCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc-----------------------------
Confidence 777888888665 2 68999999999999999999999988864211
Q ss_pred chhhhhccccccceEEEccchhhhcC
Q psy11948 142 TTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 142 ~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
.....+++|||+||||||.|
T Consensus 91 ------~~~~~~~~lvl~Ptr~La~Q 110 (579)
T 3sqw_A 91 ------DSQYMVKAVIVAPTRDLALQ 110 (579)
T ss_dssp ------SSTTSCCEEEECSSHHHHHH
T ss_pred ------cccCCCeEEEEcchHHHHHH
Confidence 11345789999999999987
No 99
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.52 E-value=0.00035 Score=51.39 Aligned_cols=68 Identities=31% Similarity=0.475 Sum_probs=52.5
Q ss_pred hhhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHH
Q psy11948 61 ILTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 135 (167)
Q Consensus 61 ~l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 135 (167)
++..+.. ++..++..|... ..++|+++.++||+|||.+|++|++..+..
T Consensus 25 l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~-------------------------- 78 (220)
T 1t6n_A 25 LLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP-------------------------- 78 (220)
T ss_dssp HHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC--------------------------
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhc--------------------------
Confidence 3444443 677788888654 467899999999999999999999877631
Q ss_pred HHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 136 EEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
....+++|||+|||+|+.|
T Consensus 79 -------------~~~~~~~lil~Pt~~L~~q 97 (220)
T 1t6n_A 79 -------------VTGQVSVLVMCHTRELAFQ 97 (220)
T ss_dssp -------------CTTCCCEEEECSCHHHHHH
T ss_pred -------------cCCCEEEEEEeCCHHHHHH
Confidence 1234689999999999976
No 100
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=96.51 E-value=0.00039 Score=57.19 Aligned_cols=69 Identities=30% Similarity=0.531 Sum_probs=54.9
Q ss_pred chhhhhhc-ccCCCCcccccc----cc--ccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHH
Q psy11948 60 PILTGIVN-KLENPTEEDEND----SA--RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVL 132 (167)
Q Consensus 60 p~l~~~~~-~~~~~~~~~~~~----~~--~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (167)
.++..+.. ++..|+..|... .. ++|+++.++||+|||++|++|++..+..
T Consensus 102 ~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~----------------------- 158 (479)
T 3fmp_B 102 QLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP----------------------- 158 (479)
T ss_dssp HHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCT-----------------------
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhh-----------------------
Confidence 34455555 888999998665 33 4899999999999999999999987742
Q ss_pred HHHHHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 133 EELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 133 e~~~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
....+++|||+||||||.|
T Consensus 159 ----------------~~~~~~~lil~Pt~~La~Q 177 (479)
T 3fmp_B 159 ----------------ANKYPQCLCLSPTYELALQ 177 (479)
T ss_dssp ----------------TSCSCCEEEECSSHHHHHH
T ss_pred ----------------cCCCCcEEEEeChHHHHHH
Confidence 2345689999999999987
No 101
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=96.30 E-value=0.00063 Score=54.49 Aligned_cols=69 Identities=36% Similarity=0.590 Sum_probs=54.7
Q ss_pred chhhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHH
Q psy11948 60 PILTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEE 134 (167)
Q Consensus 60 p~l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 134 (167)
.++..+.. ++..|+..|... ..++|+++.++||+|||++|++|+++.+..
T Consensus 47 ~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~------------------------- 101 (410)
T 2j0s_A 47 DLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI------------------------- 101 (410)
T ss_dssp HHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT-------------------------
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhh-------------------------
Confidence 34444544 788899988665 567999999999999999999999977631
Q ss_pred HHHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 135 LEEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
.....++|||+|||+||.|
T Consensus 102 --------------~~~~~~~lil~Pt~~L~~q 120 (410)
T 2j0s_A 102 --------------QVRETQALILAPTRELAVQ 120 (410)
T ss_dssp --------------TSCSCCEEEECSSHHHHHH
T ss_pred --------------ccCCceEEEEcCcHHHHHH
Confidence 1234689999999999986
No 102
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=96.12 E-value=0.00088 Score=53.39 Aligned_cols=69 Identities=30% Similarity=0.531 Sum_probs=54.0
Q ss_pred chhhhhhc-ccCCCCcccccc----cc--ccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHH
Q psy11948 60 PILTGIVN-KLENPTEEDEND----SA--RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVL 132 (167)
Q Consensus 60 p~l~~~~~-~~~~~~~~~~~~----~~--~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (167)
.++..+.. ++..|+..|... .. ++++++.++||+|||++|++|+++.+..
T Consensus 35 ~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~----------------------- 91 (412)
T 3fht_A 35 QLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP----------------------- 91 (412)
T ss_dssp HHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCT-----------------------
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhh-----------------------
Confidence 34444444 788888888655 33 4899999999999999999999987742
Q ss_pred HHHHHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 133 EELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 133 e~~~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
....+++|||+|||+||.|
T Consensus 92 ----------------~~~~~~~lil~P~~~L~~q 110 (412)
T 3fht_A 92 ----------------ANKYPQCLCLSPTYELALQ 110 (412)
T ss_dssp ----------------TSCSCCEEEECSSHHHHHH
T ss_pred ----------------cCCCCCEEEECCCHHHHHH
Confidence 2345689999999999976
No 103
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=95.96 E-value=0.0012 Score=52.80 Aligned_cols=68 Identities=40% Similarity=0.570 Sum_probs=53.6
Q ss_pred hhhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHH
Q psy11948 61 ILTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 135 (167)
Q Consensus 61 ~l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 135 (167)
++..+.. ++..++..|... ..++|+++.++||+|||++|++|+++.+..
T Consensus 51 ~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~-------------------------- 104 (414)
T 3eiq_A 51 LLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL-------------------------- 104 (414)
T ss_dssp HHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCT--------------------------
T ss_pred HHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhh--------------------------
Confidence 3444433 777888888655 568899999999999999999999987642
Q ss_pred HHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 136 EEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
.....++|||+|||+||.|
T Consensus 105 -------------~~~~~~~lil~P~~~L~~q 123 (414)
T 3eiq_A 105 -------------DLKATQALVLAPTRELAQQ 123 (414)
T ss_dssp -------------TSCSCCEEEECSSHHHHHH
T ss_pred -------------cCCceeEEEEeChHHHHHH
Confidence 1234679999999999976
No 104
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=95.92 E-value=0.0011 Score=52.33 Aligned_cols=69 Identities=33% Similarity=0.570 Sum_probs=53.1
Q ss_pred chhhhhhc-ccCCCCcccccc----ccc--cceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHH
Q psy11948 60 PILTGIVN-KLENPTEEDEND----SAR--KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVL 132 (167)
Q Consensus 60 p~l~~~~~-~~~~~~~~~~~~----~~~--~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (167)
.++..+.. ++..|+..|... ..+ +++++.++||+|||++|++|++..+..
T Consensus 15 ~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~----------------------- 71 (395)
T 3pey_A 15 ELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNP----------------------- 71 (395)
T ss_dssp HHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCT-----------------------
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhcc-----------------------
Confidence 34444444 677888888654 233 899999999999999999999877642
Q ss_pred HHHHHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 133 EELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 133 e~~~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
.....++|||+|||+|+.|
T Consensus 72 ----------------~~~~~~~lil~P~~~L~~q 90 (395)
T 3pey_A 72 ----------------EDASPQAICLAPSRELARQ 90 (395)
T ss_dssp ----------------TCCSCCEEEECSSHHHHHH
T ss_pred ----------------CCCCccEEEECCCHHHHHH
Confidence 1245689999999999976
No 105
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=95.73 E-value=0.0015 Score=51.95 Aligned_cols=69 Identities=43% Similarity=0.666 Sum_probs=54.3
Q ss_pred chhhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHH
Q psy11948 60 PILTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEE 134 (167)
Q Consensus 60 p~l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 134 (167)
.++..+.. ++..++..|... ..++++++.++||+|||++|++|++..+..
T Consensus 31 ~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~------------------------- 85 (400)
T 1s2m_A 31 ELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP------------------------- 85 (400)
T ss_dssp HHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT-------------------------
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhh-------------------------
Confidence 34455554 777888888665 467899999999999999999999877642
Q ss_pred HHHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 135 LEEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
.....++|||+|||+|+.|
T Consensus 86 --------------~~~~~~~lil~P~~~L~~q 104 (400)
T 1s2m_A 86 --------------KLNKIQALIMVPTRELALQ 104 (400)
T ss_dssp --------------TSCSCCEEEECSSHHHHHH
T ss_pred --------------ccCCccEEEEcCCHHHHHH
Confidence 1234689999999999976
No 106
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=95.69 E-value=0.0018 Score=51.32 Aligned_cols=61 Identities=30% Similarity=0.439 Sum_probs=49.8
Q ss_pred ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcch
Q psy11948 68 KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 143 (167)
Q Consensus 68 ~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 143 (167)
++..+++.|... ..++|+++.++||+|||++|++|++..+..
T Consensus 27 g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~---------------------------------- 72 (391)
T 1xti_A 27 GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP---------------------------------- 72 (391)
T ss_dssp SCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCC----------------------------------
T ss_pred CCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcc----------------------------------
Confidence 677788888654 567899999999999999999999877641
Q ss_pred hhhhccccccceEEEccchhhhcC
Q psy11948 144 EFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 144 ~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
.....++|||+|||+|+.|
T Consensus 73 -----~~~~~~~lil~P~~~L~~q 91 (391)
T 1xti_A 73 -----VTGQVSVLVMCHTRELAFQ 91 (391)
T ss_dssp -----CTTCCCEEEECSCHHHHHH
T ss_pred -----cCCCeeEEEECCCHHHHHH
Confidence 1234689999999999976
No 107
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=95.68 E-value=0.0017 Score=50.25 Aligned_cols=38 Identities=45% Similarity=0.583 Sum_probs=31.0
Q ss_pred ccCCCCcccccc----ccccceeeeecccCccceeeecchhh
Q psy11948 68 KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILT 105 (167)
Q Consensus 68 ~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~ 105 (167)
++..+++.|... ..++++++.++||+|||++|++|+++
T Consensus 13 g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~ 54 (337)
T 2z0m_A 13 GFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILE 54 (337)
T ss_dssp TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 566677777554 45789999999999999999999875
No 108
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=95.65 E-value=0.0032 Score=51.73 Aligned_cols=57 Identities=28% Similarity=0.316 Sum_probs=43.5
Q ss_pred CCCCcccc---ccccccce-eeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhh
Q psy11948 70 ENPTEEDE---NDSARKDI-VGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 145 (167)
Q Consensus 70 ~~~~~~~~---~~~~~~d~-~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 145 (167)
.+|+++|+ ....++|+ ++.++||+|||++|++|++.....
T Consensus 3 ~q~~~iq~~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~------------------------------------ 46 (451)
T 2jlq_A 3 AMGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL------------------------------------ 46 (451)
T ss_dssp CCCSCCCCCCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH------------------------------------
T ss_pred CCCCCcHHHHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh------------------------------------
Confidence 34555543 22456676 999999999999999999876541
Q ss_pred hhccccccceEEEccchhhhcC
Q psy11948 146 VKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 146 ~~~~~~~~~aLIl~PTRELa~Q 167 (167)
...++|||+||||||.|
T Consensus 47 -----~~~~~lvl~Ptr~La~Q 63 (451)
T 2jlq_A 47 -----RRLRTLILAPTRVVAAE 63 (451)
T ss_dssp -----TTCCEEEEESSHHHHHH
T ss_pred -----cCCcEEEECCCHHHHHH
Confidence 23689999999999987
No 109
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=95.43 E-value=0.0014 Score=51.89 Aligned_cols=68 Identities=37% Similarity=0.580 Sum_probs=52.9
Q ss_pred hhhhhhc-ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHH
Q psy11948 61 ILTGIVN-KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEEL 135 (167)
Q Consensus 61 ~l~~~~~-~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 135 (167)
++..+.. ++..++..|... ..++|+++.++||+|||++|++|++..+..
T Consensus 32 l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~-------------------------- 85 (394)
T 1fuu_A 32 LLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT-------------------------- 85 (394)
T ss_dssp HHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCT--------------------------
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhc--------------------------
Confidence 3333333 677888888655 467899999999999999999999877642
Q ss_pred HHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 136 EEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
....+++|||+|||+|+.|
T Consensus 86 -------------~~~~~~~lil~P~~~L~~q 104 (394)
T 1fuu_A 86 -------------SVKAPQALMLAPTRELALQ 104 (394)
T ss_dssp -------------TCCSCCEEEECSSHHHHHH
T ss_pred -------------cCCCCCEEEEcCCHHHHHH
Confidence 1345689999999999976
No 110
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=95.37 E-value=0.01 Score=52.23 Aligned_cols=34 Identities=21% Similarity=0.054 Sum_probs=26.7
Q ss_pred CCchHHHhHHHHHH----ccCCcEEEEeecCCCcccccc
Q psy11948 24 TPTKIQSMVMPSAL----LARKDIVGAAETGSGKTLAFG 58 (167)
Q Consensus 24 ~pt~iQ~~~ip~~l----~~~~d~i~~a~tgsGKt~~~~ 58 (167)
.+.|.|..++..++ .+ .+.|+..++|.|||+..+
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~-~~~ILademGlGKT~~ai 273 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKG-DNGILADEMGLGKTVQTV 273 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTT-CCEEECCCTTSSTTHHHH
T ss_pred CcCHHHHHHHHHHHHHhhcC-CCEEEEeCCCcchHHHHH
Confidence 56789999997554 44 788999999999997543
No 111
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=95.24 E-value=0.0037 Score=51.21 Aligned_cols=30 Identities=27% Similarity=0.199 Sum_probs=26.5
Q ss_pred ccccceeeeecccCccceeeecchhhhhhh
Q psy11948 80 SARKDIVGAAETGSGKTLAFGIPILTGIVN 109 (167)
Q Consensus 80 ~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~ 109 (167)
..++|+++.++||+|||++|++|+++.+..
T Consensus 6 ~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~ 35 (440)
T 1yks_A 6 KKGMTTVLDFHPGAGKTRRFLPQILAECAR 35 (440)
T ss_dssp STTCEEEECCCTTSSTTTTHHHHHHHHHHH
T ss_pred hCCCCEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 468999999999999999999999986653
No 112
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=95.09 E-value=0.0057 Score=52.43 Aligned_cols=57 Identities=28% Similarity=0.333 Sum_probs=46.3
Q ss_pred CCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhh
Q psy11948 70 ENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEF 145 (167)
Q Consensus 70 ~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 145 (167)
..++++|... ..++|+++.++||+|||++|++|+++.+..
T Consensus 170 ~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~------------------------------------ 213 (618)
T 2whx_A 170 RIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK------------------------------------ 213 (618)
T ss_dssp CCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH------------------------------------
T ss_pred ccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh------------------------------------
Confidence 4555554332 678999999999999999999999987752
Q ss_pred hhccccccceEEEccchhhhcC
Q psy11948 146 VKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 146 ~~~~~~~~~aLIl~PTRELa~Q 167 (167)
..+++|||+||||||.|
T Consensus 214 -----~~~~vLvl~PtreLa~Q 230 (618)
T 2whx_A 214 -----RRLRTLILAPTRVVAAE 230 (618)
T ss_dssp -----TTCCEEEEESSHHHHHH
T ss_pred -----CCCeEEEEcChHHHHHH
Confidence 24689999999999987
No 113
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.86 E-value=0.0034 Score=50.46 Aligned_cols=55 Identities=25% Similarity=0.083 Sum_probs=43.6
Q ss_pred CCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhh
Q psy11948 71 NPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFV 146 (167)
Q Consensus 71 ~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 146 (167)
.|+..|... ..++|+++.++||+|||++|++|++...
T Consensus 21 ~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~--------------------------------------- 61 (414)
T 3oiy_A 21 DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--------------------------------------- 61 (414)
T ss_dssp CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH---------------------------------------
T ss_pred CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh---------------------------------------
Confidence 456666443 5678999999999999999888877544
Q ss_pred hccccccceEEEccchhhhcC
Q psy11948 147 KKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 147 ~~~~~~~~aLIl~PTRELa~Q 167 (167)
...+++|||+||||||.|
T Consensus 62 ---~~~~~~lil~Pt~~L~~q 79 (414)
T 3oiy_A 62 ---RKGKKSALVFPTVTLVKQ 79 (414)
T ss_dssp ---TTTCCEEEEESSHHHHHH
T ss_pred ---cCCCEEEEEECCHHHHHH
Confidence 134689999999999987
No 114
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.85 E-value=0.0041 Score=48.53 Aligned_cols=60 Identities=45% Similarity=0.634 Sum_probs=47.9
Q ss_pred ccCCCCcccccc----ccc-cceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcc
Q psy11948 68 KLENPTEEDEND----SAR-KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 142 (167)
Q Consensus 68 ~~~~~~~~~~~~----~~~-~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 142 (167)
++..++..|... ..+ +++++.++||+|||++|++|++..+..
T Consensus 25 g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~--------------------------------- 71 (367)
T 1hv8_A 25 GFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE--------------------------------- 71 (367)
T ss_dssp TCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS---------------------------------
T ss_pred CCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc---------------------------------
Confidence 677788888655 234 799999999999999999999876531
Q ss_pred hhhhhccccccceEEEccchhhhcC
Q psy11948 143 TEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 143 ~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
....++|||+|||+|+.|
T Consensus 72 -------~~~~~~lil~P~~~L~~q 89 (367)
T 1hv8_A 72 -------NNGIEAIILTPTRELAIQ 89 (367)
T ss_dssp -------SSSCCEEEECSCHHHHHH
T ss_pred -------cCCCcEEEEcCCHHHHHH
Confidence 234689999999999976
No 115
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=94.73 E-value=0.0058 Score=50.31 Aligned_cols=47 Identities=32% Similarity=0.390 Sum_probs=40.6
Q ss_pred ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhhhccccccceEEEc
Q psy11948 80 SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 159 (167)
Q Consensus 80 ~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~aLIl~ 159 (167)
..++++++.++||+|||++|++|+++.+.. ...++|||+
T Consensus 19 ~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-----------------------------------------~~~~~lvl~ 57 (459)
T 2z83_A 19 RKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-----------------------------------------QRLRTAVLA 57 (459)
T ss_dssp STTCEEEECCCTTSCTTTTHHHHHHHHHHH-----------------------------------------TTCCEEEEE
T ss_pred hcCCcEEEECCCCCCHHHHHHHHHHHHHHh-----------------------------------------CCCcEEEEC
Confidence 457899999999999999999999977641 236899999
Q ss_pred cchhhhcC
Q psy11948 160 PTRELAIQ 167 (167)
Q Consensus 160 PTRELa~Q 167 (167)
||||||.|
T Consensus 58 Ptr~La~Q 65 (459)
T 2z83_A 58 PTRVVAAE 65 (459)
T ss_dssp CSHHHHHH
T ss_pred chHHHHHH
Confidence 99999987
No 116
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=94.51 E-value=0.0043 Score=54.83 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=44.7
Q ss_pred ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcch
Q psy11948 68 KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 143 (167)
Q Consensus 68 ~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 143 (167)
++ .|+++|..+ +.|+ ++.++||+|||++|.+|++...+
T Consensus 81 G~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL----------------------------------- 122 (844)
T 1tf5_A 81 GM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL----------------------------------- 122 (844)
T ss_dssp SC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT-----------------------------------
T ss_pred CC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH-----------------------------------
Confidence 66 899999665 5555 99999999999999999984322
Q ss_pred hhhhccccccceEEEccchhhhcC
Q psy11948 144 EFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 144 ~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
...+++||+||||||.|
T Consensus 123 -------~g~~vlVltptreLA~q 139 (844)
T 1tf5_A 123 -------TGKGVHVVTVNEYLASR 139 (844)
T ss_dssp -------TSSCEEEEESSHHHHHH
T ss_pred -------cCCCEEEEeCCHHHHHH
Confidence 12479999999999986
No 117
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=94.50 E-value=0.0055 Score=52.52 Aligned_cols=47 Identities=28% Similarity=0.179 Sum_probs=40.1
Q ss_pred ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhhhccccccceEEEc
Q psy11948 80 SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 159 (167)
Q Consensus 80 ~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~aLIl~ 159 (167)
..++++++.||||+|||++|++|++..+.. ...+++|++
T Consensus 20 ~~~~~~~~~apTGtGKT~a~l~p~l~~~~~-----------------------------------------~~~kvli~t 58 (620)
T 4a15_A 20 QKSYGVALESPTGSGKTIMALKSALQYSSE-----------------------------------------RKLKVLYLV 58 (620)
T ss_dssp HHSSEEEEECCTTSCHHHHHHHHHHHHHHH-----------------------------------------HTCEEEEEE
T ss_pred HcCCCEEEECCCCCCHHHHHHHHHHHhhhh-----------------------------------------cCCeEEEEC
Confidence 367999999999999999999999987641 125799999
Q ss_pred cchhhhcC
Q psy11948 160 PTRELAIQ 167 (167)
Q Consensus 160 PTRELa~Q 167 (167)
|||+|+.|
T Consensus 59 ~T~~l~~Q 66 (620)
T 4a15_A 59 RTNSQEEQ 66 (620)
T ss_dssp SSHHHHHH
T ss_pred CCHHHHHH
Confidence 99999876
No 118
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=94.48 E-value=0.023 Score=48.73 Aligned_cols=38 Identities=24% Similarity=0.028 Sum_probs=28.3
Q ss_pred CCchHHHhHHHHHH--------ccCCcEEEEeecCCCcccccccch
Q psy11948 24 TPTKIQSMVMPSAL--------LARKDIVGAAETGSGKTLAFGIPI 61 (167)
Q Consensus 24 ~pt~iQ~~~ip~~l--------~~~~d~i~~a~tgsGKt~~~~lp~ 61 (167)
.+.|.|.+++..+. .++...|+...+|.|||+..+..+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i 100 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLI 100 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHH
Confidence 67899999998764 233678888889999987654433
No 119
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=94.41 E-value=0.0084 Score=48.94 Aligned_cols=27 Identities=26% Similarity=0.195 Sum_probs=23.9
Q ss_pred ccceeeeecccCccceeeecchhhhhh
Q psy11948 82 RKDIVGAAETGSGKTLAFGIPILTGIV 108 (167)
Q Consensus 82 ~~d~~~~a~tgsgkt~~~~~p~i~~~~ 108 (167)
++++++.++||+|||.+|++|+++...
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~ 28 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAV 28 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999986554
No 120
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=94.35 E-value=0.0075 Score=50.18 Aligned_cols=61 Identities=31% Similarity=0.503 Sum_probs=47.7
Q ss_pred ccCCCCcccccc----ccc--cceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhc
Q psy11948 68 KLENPTEEDEND----SAR--KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESAN 141 (167)
Q Consensus 68 ~~~~~~~~~~~~----~~~--~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 141 (167)
++..|+..|..+ ..+ +++++.++||+|||.+|++|++..+..
T Consensus 138 g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~-------------------------------- 185 (508)
T 3fho_A 138 XXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDA-------------------------------- 185 (508)
T ss_dssp -CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCT--------------------------------
T ss_pred cccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHh--------------------------------
Confidence 445567777554 344 899999999999999999999987742
Q ss_pred chhhhhccccccceEEEccchhhhcC
Q psy11948 142 TTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 142 ~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
.....++|||+|||+|+.|
T Consensus 186 -------~~~~~~vLvl~P~~~L~~Q 204 (508)
T 3fho_A 186 -------SVPKPQAICLAPSRELARQ 204 (508)
T ss_dssp -------TCCSCCEEEECSCHHHHHH
T ss_pred -------CCCCceEEEEECcHHHHHH
Confidence 2345689999999999976
No 121
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=94.02 E-value=0.0054 Score=52.98 Aligned_cols=58 Identities=22% Similarity=0.260 Sum_probs=45.4
Q ss_pred ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcch
Q psy11948 68 KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 143 (167)
Q Consensus 68 ~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 143 (167)
++..++..|... ..++++++++|||+|||+++.+|+++.+..
T Consensus 22 g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~---------------------------------- 67 (702)
T 2p6r_A 22 GIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---------------------------------- 67 (702)
T ss_dssp ---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT----------------------------------
T ss_pred CCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh----------------------------------
Confidence 455677777544 567999999999999999999999876641
Q ss_pred hhhhccccccceEEEccchhhhcC
Q psy11948 144 EFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 144 ~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
..++||++|||+||.|
T Consensus 68 --------~~~~l~i~P~r~La~q 83 (702)
T 2p6r_A 68 --------GGKSLYVVPLRALAGE 83 (702)
T ss_dssp --------TCCEEEEESSHHHHHH
T ss_pred --------CCcEEEEeCcHHHHHH
Confidence 3579999999999976
No 122
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=93.96 E-value=0.0074 Score=49.81 Aligned_cols=51 Identities=20% Similarity=0.073 Sum_probs=41.9
Q ss_pred ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhhhccccccceEEEc
Q psy11948 80 SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 159 (167)
Q Consensus 80 ~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~aLIl~ 159 (167)
..++|+++.++||+|||++|++|+++.+.... .....++|||+
T Consensus 17 ~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~-------------------------------------~~~~~~~lil~ 59 (555)
T 3tbk_A 17 KKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-------------------------------------CGQKGKVVFFA 59 (555)
T ss_dssp HTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-------------------------------------SSCCCCEEEEC
T ss_pred hCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-------------------------------------cCCCCEEEEEe
Confidence 45789999999999999999999998775321 12256899999
Q ss_pred cchhhhcC
Q psy11948 160 PTRELAIQ 167 (167)
Q Consensus 160 PTRELa~Q 167 (167)
|||+|+.|
T Consensus 60 P~~~L~~q 67 (555)
T 3tbk_A 60 NQIPVYEQ 67 (555)
T ss_dssp SSHHHHHH
T ss_pred CCHHHHHH
Confidence 99999976
No 123
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=93.84 E-value=0.0076 Score=49.88 Aligned_cols=51 Identities=25% Similarity=0.134 Sum_probs=41.7
Q ss_pred ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhhhccccccceEEEc
Q psy11948 80 SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 159 (167)
Q Consensus 80 ~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~aLIl~ 159 (167)
..++|+++.++||+|||++|++|+++.+.... .....++|||+
T Consensus 20 ~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~-------------------------------------~~~~~~~lil~ 62 (556)
T 4a2p_A 20 INGKNALICAPTGSGKTFVSILICEHHFQNMP-------------------------------------AGRKAKVVFLA 62 (556)
T ss_dssp HTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-------------------------------------SSCCCCEEEEC
T ss_pred HcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc-------------------------------------ccCCCeEEEEe
Confidence 45789999999999999999999988775321 12256899999
Q ss_pred cchhhhcC
Q psy11948 160 PTRELAIQ 167 (167)
Q Consensus 160 PTRELa~Q 167 (167)
|||+|+.|
T Consensus 63 P~~~L~~q 70 (556)
T 4a2p_A 63 TKVPVYEQ 70 (556)
T ss_dssp SSHHHHHH
T ss_pred CCHHHHHH
Confidence 99999976
No 124
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=93.49 E-value=0.01 Score=50.84 Aligned_cols=62 Identities=18% Similarity=0.029 Sum_probs=45.4
Q ss_pred cCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchh
Q psy11948 69 LENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 144 (167)
Q Consensus 69 ~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 144 (167)
+..++..|... ..++|++++++||+|||++|++|+++.+....
T Consensus 11 ~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~--------------------------------- 57 (696)
T 2ykg_A 11 PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP--------------------------------- 57 (696)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC---------------------------------
T ss_pred CCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc---------------------------------
Confidence 34455555433 46789999999999999999999987764211
Q ss_pred hhhccccccceEEEccchhhhcC
Q psy11948 145 FVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 145 ~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
.....++|||+|||+|+.|
T Consensus 58 ----~~~~~~~lvl~Pt~~L~~Q 76 (696)
T 2ykg_A 58 ----QGQKGKVVFFANQIPVYEQ 76 (696)
T ss_dssp ----TTCCCCEEEECSSHHHHHH
T ss_pred ----cCCCCeEEEEECCHHHHHH
Confidence 1123579999999999976
No 125
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=93.41 E-value=0.037 Score=47.77 Aligned_cols=37 Identities=22% Similarity=0.331 Sum_probs=27.3
Q ss_pred CCCCCCchHHHhHHHHHHc----cCCcEEEEeecCCCccccc
Q psy11948 20 KGFKTPTKIQSMVMPSALL----ARKDIVGAAETGSGKTLAF 57 (167)
Q Consensus 20 ~g~~~pt~iQ~~~ip~~l~----~~~d~i~~a~tgsGKt~~~ 57 (167)
.+| .|++.|..+|..+.. |.+..++.+.||||||+.+
T Consensus 5 ~~~-~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~ 45 (664)
T 1c4o_A 5 RGP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTM 45 (664)
T ss_dssp CSC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHH
T ss_pred CCC-CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHH
Confidence 367 999999999976653 3234677888999998744
No 126
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=93.40 E-value=0.013 Score=50.63 Aligned_cols=59 Identities=22% Similarity=0.294 Sum_probs=47.0
Q ss_pred ccCCCCcccccc-----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcc
Q psy11948 68 KLENPTEEDEND-----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 142 (167)
Q Consensus 68 ~~~~~~~~~~~~-----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 142 (167)
++..++..|... ..++++++++|||+|||+++.+++++.+..
T Consensus 27 g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------------------------------- 73 (715)
T 2va8_A 27 GIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK--------------------------------- 73 (715)
T ss_dssp SCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH---------------------------------
T ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH---------------------------------
Confidence 455667766443 457899999999999999999999877641
Q ss_pred hhhhhccccccceEEEccchhhhcC
Q psy11948 143 TEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 143 ~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
...++||++|||+||.|
T Consensus 74 --------~~~~il~i~P~r~La~q 90 (715)
T 2va8_A 74 --------NGGKAIYVTPLRALTNE 90 (715)
T ss_dssp --------SCSEEEEECSCHHHHHH
T ss_pred --------CCCeEEEEeCcHHHHHH
Confidence 13579999999999976
No 127
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=93.22 E-value=0.013 Score=50.65 Aligned_cols=59 Identities=24% Similarity=0.254 Sum_probs=46.5
Q ss_pred ccCCCCcccccc-----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcc
Q psy11948 68 KLENPTEEDEND-----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANT 142 (167)
Q Consensus 68 ~~~~~~~~~~~~-----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 142 (167)
++..++..|... ..++++++++|||+|||+++.+|+++.+..
T Consensus 20 g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------------------------------- 66 (720)
T 2zj8_A 20 GIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT--------------------------------- 66 (720)
T ss_dssp TCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH---------------------------------
T ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh---------------------------------
Confidence 455666666332 457899999999999999999999977642
Q ss_pred hhhhhccccccceEEEccchhhhcC
Q psy11948 143 TEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 143 ~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
...++||++|||+||.|
T Consensus 67 --------~~~~~l~i~P~raLa~q 83 (720)
T 2zj8_A 67 --------QGGKAVYIVPLKALAEE 83 (720)
T ss_dssp --------HCSEEEEECSSGGGHHH
T ss_pred --------CCCEEEEEcCcHHHHHH
Confidence 13579999999999976
No 128
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.96 E-value=0.08 Score=43.39 Aligned_cols=39 Identities=18% Similarity=0.153 Sum_probs=30.5
Q ss_pred HHHCCCCCCchHHHhHHHHHHcc----CCcEEEEeecCCCccc
Q psy11948 17 LYQKGFKTPTKIQSMVMPSALLA----RKDIVGAAETGSGKTL 55 (167)
Q Consensus 17 l~~~g~~~pt~iQ~~~ip~~l~~----~~d~i~~a~tgsGKt~ 55 (167)
..-+.|..+++-|+.++..++.. ...+++.++.|+|||.
T Consensus 18 ~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ 60 (459)
T 3upu_A 18 GSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATT 60 (459)
T ss_dssp ---CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHH
T ss_pred cCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHH
Confidence 44567999999999999876532 3489999999999995
No 129
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=92.96 E-value=0.079 Score=45.37 Aligned_cols=55 Identities=18% Similarity=0.124 Sum_probs=37.2
Q ss_pred CCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhhhhhcccCCCCccccccccccceeeeeccc
Q psy11948 24 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSARKDIVGAAETG 92 (167)
Q Consensus 24 ~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~~~~~~~~~~~~~~~~~~~~~d~~~~a~tg 92 (167)
.+.+-|.+|+-.++....-.++++|.|+|||....- ++..+.. .+..++++++|.
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~-~I~~l~~-------------~~~~ILv~a~TN 243 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVE-IILQAVK-------------QGLKVLCCAPSN 243 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHH-HHHHHHH-------------TTCCEEEEESSH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHH-HHHHHHh-------------CCCeEEEEcCch
Confidence 467899999988887623468999999999986432 2333331 234577777763
No 130
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=92.81 E-value=0.021 Score=49.46 Aligned_cols=46 Identities=30% Similarity=0.384 Sum_probs=40.6
Q ss_pred cccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhhhccccccceEEEcc
Q psy11948 81 ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 160 (167)
Q Consensus 81 ~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~aLIl~P 160 (167)
.++|+++.++||+|||++|++|++..+.. ...++|||+|
T Consensus 240 ~g~dvlv~apTGSGKTl~~ll~il~~l~~-----------------------------------------~~~~~lilaP 278 (673)
T 2wv9_A 240 KRQLTVLDLHPGAGKTRRILPQIIKDAIQ-----------------------------------------KRLRTAVLAP 278 (673)
T ss_dssp TTCEEEECCCTTTTTTTTHHHHHHHHHHH-----------------------------------------TTCCEEEEES
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHh-----------------------------------------CCCcEEEEcc
Confidence 78999999999999999999999977641 2478999999
Q ss_pred chhhhcC
Q psy11948 161 TRELAIQ 167 (167)
Q Consensus 161 TRELa~Q 167 (167)
|||||.|
T Consensus 279 Tr~La~Q 285 (673)
T 2wv9_A 279 TRVVAAE 285 (673)
T ss_dssp SHHHHHH
T ss_pred HHHHHHH
Confidence 9999987
No 131
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=92.67 E-value=0.019 Score=48.25 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=23.0
Q ss_pred ccccceeeeecccCccceeeecchhh
Q psy11948 80 SARKDIVGAAETGSGKTLAFGIPILT 105 (167)
Q Consensus 80 ~~~~d~~~~a~tgsgkt~~~~~p~i~ 105 (167)
..++++++.++||+|||++|++|.+.
T Consensus 24 ~~~~~~~~~a~TGtGKT~~~l~~~~~ 49 (540)
T 2vl7_A 24 KHGKTLLLNAKPGLGKTVFVEVLGMQ 49 (540)
T ss_dssp HTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HcCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 35689999999999999999999864
No 132
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=92.59 E-value=0.025 Score=48.18 Aligned_cols=38 Identities=32% Similarity=0.434 Sum_probs=32.0
Q ss_pred ccCCCCcccccc----ccccceeeeecccCccceeeecchhh
Q psy11948 68 KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILT 105 (167)
Q Consensus 68 ~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~ 105 (167)
++..++..|... ..++|+++.+|||+|||++|.+|++.
T Consensus 41 g~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~ 82 (591)
T 2v1x_A 41 KLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC 82 (591)
T ss_dssp CCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH
Confidence 566777777554 67899999999999999999999973
No 133
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=92.42 E-value=0.018 Score=50.53 Aligned_cols=62 Identities=21% Similarity=0.075 Sum_probs=47.0
Q ss_pred cCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchh
Q psy11948 69 LENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 144 (167)
Q Consensus 69 ~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 144 (167)
+..++..|... ..++|++++++||+|||++|++|++..+....
T Consensus 246 ~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~--------------------------------- 292 (797)
T 4a2q_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP--------------------------------- 292 (797)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---------------------------------
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---------------------------------
Confidence 44566666443 46799999999999999999999988775321
Q ss_pred hhhccccccceEEEccchhhhcC
Q psy11948 145 FVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 145 ~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
.....++|||+||++|+.|
T Consensus 293 ----~~~~~~~Lvl~Pt~~L~~Q 311 (797)
T 4a2q_A 293 ----AGRKAKVVFLATKVPVYEQ 311 (797)
T ss_dssp ----SSCCCCEEEECSSHHHHHH
T ss_pred ----ccCCCeEEEEeCCHHHHHH
Confidence 1225689999999999976
No 134
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=92.12 E-value=0.012 Score=52.07 Aligned_cols=53 Identities=19% Similarity=0.192 Sum_probs=42.9
Q ss_pred CCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhh
Q psy11948 71 NPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFV 146 (167)
Q Consensus 71 ~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 146 (167)
.|+++|..+ +.|+ ++.++||+|||++|.+|++...+
T Consensus 74 ~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l-------------------------------------- 113 (853)
T 2fsf_A 74 RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL-------------------------------------- 113 (853)
T ss_dssp CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT--------------------------------------
T ss_pred CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH--------------------------------------
Confidence 788888655 4455 89999999999999999985432
Q ss_pred hccccccceEEEccchhhhcC
Q psy11948 147 KKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 147 ~~~~~~~~aLIl~PTRELa~Q 167 (167)
...+++||+||||||.|
T Consensus 114 ----~g~~vlVltPTreLA~Q 130 (853)
T 2fsf_A 114 ----TGKGVHVVTVNDYLAQR 130 (853)
T ss_dssp ----TSSCCEEEESSHHHHHH
T ss_pred ----cCCcEEEEcCCHHHHHH
Confidence 12579999999999986
No 135
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=92.10 E-value=0.018 Score=51.20 Aligned_cols=71 Identities=21% Similarity=0.189 Sum_probs=50.9
Q ss_pred Ccccccccchhhhhhc-------ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCC
Q psy11948 52 GKTLAFGIPILTGIVN-------KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEN 120 (167)
Q Consensus 52 GKt~~~~lp~l~~~~~-------~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~ 120 (167)
|.++--++|-.-.+.+ ++ .|+++|..+ +.|+ ++.++||+|||++|.+|++...+
T Consensus 86 ge~ld~~lpeafA~vrEa~~R~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL------------ 150 (922)
T 1nkt_A 86 PETLDDLLPEAFAVAREAAWRVLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL------------ 150 (922)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHT------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHH------------
Confidence 5666655553322222 44 888888665 4455 99999999999999999974332
Q ss_pred CCcchhHHHHHHHHHHHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 121 DSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 121 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
...+++||+||||||.|
T Consensus 151 ------------------------------~g~~v~VvTpTreLA~Q 167 (922)
T 1nkt_A 151 ------------------------------AGNGVHIVTVNDYLAKR 167 (922)
T ss_dssp ------------------------------TTSCEEEEESSHHHHHH
T ss_pred ------------------------------hCCCeEEEeCCHHHHHH
Confidence 12379999999999976
No 136
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=92.07 E-value=0.02 Score=52.29 Aligned_cols=55 Identities=20% Similarity=0.262 Sum_probs=45.4
Q ss_pred CCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhh
Q psy11948 71 NPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFV 146 (167)
Q Consensus 71 ~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 146 (167)
.++..|..+ ..++|++++++||+|||++|.+|++..+.
T Consensus 184 ~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~-------------------------------------- 225 (1108)
T 3l9o_A 184 TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK-------------------------------------- 225 (1108)
T ss_dssp CCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH--------------------------------------
T ss_pred CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh--------------------------------------
Confidence 456666444 56799999999999999999999987763
Q ss_pred hccccccceEEEccchhhhcC
Q psy11948 147 KKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 147 ~~~~~~~~aLIl~PTRELa~Q 167 (167)
...++||++|||+||.|
T Consensus 226 ----~g~rvlvl~PtraLa~Q 242 (1108)
T 3l9o_A 226 ----NKQRVIYTSPIKALSNQ 242 (1108)
T ss_dssp ----TTCEEEEEESSHHHHHH
T ss_pred ----cCCeEEEEcCcHHHHHH
Confidence 23579999999999987
No 137
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=91.63 E-value=0.025 Score=51.57 Aligned_cols=55 Identities=25% Similarity=0.083 Sum_probs=44.0
Q ss_pred CCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhh
Q psy11948 71 NPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFV 146 (167)
Q Consensus 71 ~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 146 (167)
.|+..|... ..++|+++.++||+|||++|+.+++..+
T Consensus 78 ~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~--------------------------------------- 118 (1104)
T 4ddu_A 78 DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--------------------------------------- 118 (1104)
T ss_dssp CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH---------------------------------------
T ss_pred CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH---------------------------------------
Confidence 477777554 5679999999999999997777766544
Q ss_pred hccccccceEEEccchhhhcC
Q psy11948 147 KKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 147 ~~~~~~~~aLIl~PTRELa~Q 167 (167)
...+++|||+||||||.|
T Consensus 119 ---~~~~~~Lil~PtreLa~Q 136 (1104)
T 4ddu_A 119 ---RKGKKSALVFPTVTLVKQ 136 (1104)
T ss_dssp ---TTTCCEEEEESSHHHHHH
T ss_pred ---hcCCeEEEEechHHHHHH
Confidence 134689999999999987
No 138
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=91.50 E-value=0.02 Score=41.28 Aligned_cols=52 Identities=25% Similarity=0.129 Sum_probs=40.3
Q ss_pred ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhhhccccccceEEEc
Q psy11948 80 SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 159 (167)
Q Consensus 80 ~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~aLIl~ 159 (167)
..++++++.++||+|||.+++.++...+.... ......++||++
T Consensus 46 ~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~------------------------------------~~~~~~~~lil~ 89 (216)
T 3b6e_A 46 LEGKNIIICLPTGSGKTRVAVYIAKDHLDKKK------------------------------------KASEPGKVIVLV 89 (216)
T ss_dssp HTTCCEEEECSCHHHHHHHHHHHHHHHHHHHH------------------------------------HTTCCCCEEEEE
T ss_pred hcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcc------------------------------------cccCCCcEEEEE
Confidence 34689999999999999999999886654211 112346899999
Q ss_pred cchhhhcC
Q psy11948 160 PTRELAIQ 167 (167)
Q Consensus 160 PTRELa~Q 167 (167)
||++|+.|
T Consensus 90 p~~~L~~q 97 (216)
T 3b6e_A 90 NKVLLVEQ 97 (216)
T ss_dssp SSHHHHHH
T ss_pred CHHHHHHH
Confidence 99999876
No 139
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=91.47 E-value=0.03 Score=50.84 Aligned_cols=56 Identities=23% Similarity=0.235 Sum_probs=45.8
Q ss_pred ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcch
Q psy11948 68 KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 143 (167)
Q Consensus 68 ~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 143 (167)
++. | ..|... ..++|+++.++||+|||+ |.+|++..+..
T Consensus 55 g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~---------------------------------- 97 (1054)
T 1gku_B 55 GEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL---------------------------------- 97 (1054)
T ss_dssp CSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT----------------------------------
T ss_pred CCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh----------------------------------
Confidence 555 6 666544 668999999999999998 99999877641
Q ss_pred hhhhccccccceEEEccchhhhcC
Q psy11948 144 EFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 144 ~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
..+++|||+||||||.|
T Consensus 98 -------~~~~~lil~PtreLa~Q 114 (1054)
T 1gku_B 98 -------KGKRCYVIFPTSLLVIQ 114 (1054)
T ss_dssp -------TSCCEEEEESCHHHHHH
T ss_pred -------cCCeEEEEeccHHHHHH
Confidence 24689999999999987
No 140
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=90.90 E-value=0.16 Score=43.06 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=25.9
Q ss_pred CCCchHHHhHHHHHHccCCcEEEEeecCCCcccccc
Q psy11948 23 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 58 (167)
Q Consensus 23 ~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~ 58 (167)
..+++-|.+++. .....+++.|..|||||....
T Consensus 8 ~~Ln~~Q~~av~---~~~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 8 DSLNDKQREAVA---APRSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp TTCCHHHHHHHT---CCSSCEEEEECTTSCHHHHHH
T ss_pred hcCCHHHHHHHh---CCCCCEEEEECCCCCHHHHHH
Confidence 468999999885 223679999999999997543
No 141
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=90.71 E-value=0.16 Score=43.08 Aligned_cols=32 Identities=19% Similarity=0.179 Sum_probs=28.3
Q ss_pred CCchHHHhHHHHHHccCCcEEEEeecCCCcccc
Q psy11948 24 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 24 ~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
.+++-|..++..++.+ ..+++.++.|+|||..
T Consensus 189 ~L~~~Q~~Av~~~~~~-~~~~I~G~pGTGKTt~ 220 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGH-RLVVLTGGPGTGKSTT 220 (574)
T ss_dssp TCCHHHHHHHHHHTTC-SEEEEECCTTSCHHHH
T ss_pred CCCHHHHHHHHHHHhC-CEEEEEcCCCCCHHHH
Confidence 5789999999888877 8899999999999964
No 142
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=90.63 E-value=0.028 Score=46.99 Aligned_cols=37 Identities=27% Similarity=0.393 Sum_probs=30.0
Q ss_pred ccCCCCcccccc----ccccceeeeecccCccceeeecchh
Q psy11948 68 KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPIL 104 (167)
Q Consensus 68 ~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i 104 (167)
++..++..|... ..++|+++.+|||+|||++|.+|++
T Consensus 22 g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l 62 (523)
T 1oyw_A 22 GYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPAL 62 (523)
T ss_dssp CCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHH
Confidence 455666666544 5678999999999999999999987
No 143
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=90.46 E-value=0.22 Score=42.49 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=28.5
Q ss_pred CCCchHHHhHHHHHHccCCcEEEEeecCCCccccc
Q psy11948 23 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 57 (167)
Q Consensus 23 ~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~ 57 (167)
..+++-|..++-.++.+ .-+++.++.|+|||...
T Consensus 179 ~~ln~~Q~~av~~~l~~-~~~li~GppGTGKT~~~ 212 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQR-PLSLIQGPPGTGKTVTS 212 (624)
T ss_dssp CCCCHHHHHHHHHHHTC-SEEEEECCTTSCHHHHH
T ss_pred CCCCHHHHHHHHHHhcC-CCeEEECCCCCCHHHHH
Confidence 45788999999888866 67889999999999753
No 144
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=90.24 E-value=0.041 Score=49.30 Aligned_cols=62 Identities=21% Similarity=0.075 Sum_probs=46.6
Q ss_pred cCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchh
Q psy11948 69 LENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTE 144 (167)
Q Consensus 69 ~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 144 (167)
...|+..|... ..++|++++++||+|||++|++|++..+....
T Consensus 246 ~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~--------------------------------- 292 (936)
T 4a2w_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP--------------------------------- 292 (936)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC---------------------------------
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc---------------------------------
Confidence 44566666443 56799999999999999999999987775321
Q ss_pred hhhccccccceEEEccchhhhcC
Q psy11948 145 FVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 145 ~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
.....++|||+||++|+.|
T Consensus 293 ----~~~~~~vLvl~Pt~~L~~Q 311 (936)
T 4a2w_A 293 ----AGRKAKVVFLATKVPVYEQ 311 (936)
T ss_dssp ----SSCCCCEEEECSSHHHHHH
T ss_pred ----ccCCCeEEEEeCCHHHHHH
Confidence 1124679999999999976
No 145
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=90.11 E-value=0.046 Score=40.52 Aligned_cols=51 Identities=22% Similarity=0.269 Sum_probs=40.2
Q ss_pred ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhhhccccccceEEEc
Q psy11948 80 SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 159 (167)
Q Consensus 80 ~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~aLIl~ 159 (167)
..++++++.++||+|||..|.+++++..... .....+++++++
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~-------------------------------------~~~~~~~~l~~~ 116 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFILDDFIQN-------------------------------------DRAAECNIVVTQ 116 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHHHHHHHT-------------------------------------TCGGGCEEEEEE
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHHhcchhhc-------------------------------------CCCCceEEEEec
Confidence 4678999999999999999888887665421 112457899999
Q ss_pred cchhhhcC
Q psy11948 160 PTRELAIQ 167 (167)
Q Consensus 160 PTRELa~Q 167 (167)
|||+||.|
T Consensus 117 p~~~la~q 124 (235)
T 3llm_A 117 PRRISAVS 124 (235)
T ss_dssp SSHHHHHH
T ss_pred cchHHHHH
Confidence 99999875
No 146
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=89.94 E-value=0.052 Score=46.49 Aligned_cols=52 Identities=23% Similarity=0.116 Sum_probs=41.1
Q ss_pred ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhhhccccccceEEEc
Q psy11948 80 SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 159 (167)
Q Consensus 80 ~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~aLIl~ 159 (167)
..++|+++.++||+|||++|++|+++.+.... ......++|||+
T Consensus 20 l~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~------------------------------------~~~~~~~vlvl~ 63 (699)
T 4gl2_A 20 LEGKNIIICLPTGCGKTRVAVYIAKDHLDKKK------------------------------------KASEPGKVIVLV 63 (699)
T ss_dssp HSSCCEEECCCTTSCHHHHHHHHHHHHHHHHH------------------------------------HHTCCCCBCCEE
T ss_pred HhCCCEEEEcCCCCcHHHHHHHHHHHHHHhcc------------------------------------ccCCCCeEEEEE
Confidence 35789999999999999999999988775310 112236799999
Q ss_pred cchhhhcC
Q psy11948 160 PTRELAIQ 167 (167)
Q Consensus 160 PTRELa~Q 167 (167)
||++|+.|
T Consensus 64 P~~~L~~Q 71 (699)
T 4gl2_A 64 NKVLLVEQ 71 (699)
T ss_dssp SCSHHHHH
T ss_pred CCHHHHHH
Confidence 99999976
No 147
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=89.64 E-value=0.031 Score=49.95 Aligned_cols=55 Identities=16% Similarity=0.163 Sum_probs=42.9
Q ss_pred ccCCCCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcch
Q psy11948 68 KLENPTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTT 143 (167)
Q Consensus 68 ~~~~~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 143 (167)
++ .|+.+|..+ +.|+ ++.++||+|||++|.+|++...+
T Consensus 77 G~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL----------------------------------- 118 (997)
T 2ipc_A 77 GM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL----------------------------------- 118 (997)
T ss_dssp CC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT-----------------------------------
T ss_pred CC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH-----------------------------------
Confidence 45 788888655 4444 89999999999999999964332
Q ss_pred hhhhccccccceEEEccchhhhcC
Q psy11948 144 EFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 144 ~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
...+++||+||||||.|
T Consensus 119 -------~G~qv~VvTPTreLA~Q 135 (997)
T 2ipc_A 119 -------TGKGVHVVTVNDYLARR 135 (997)
T ss_dssp -------TCSCCEEEESSHHHHHH
T ss_pred -------hCCCEEEEeCCHHHHHH
Confidence 12369999999999986
No 148
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=89.13 E-value=0.068 Score=44.91 Aligned_cols=43 Identities=28% Similarity=0.117 Sum_probs=37.6
Q ss_pred ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhhhccccccceEEEc
Q psy11948 80 SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 159 (167)
Q Consensus 80 ~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~aLIl~ 159 (167)
..++|+++.++||+|||++|++|++. ...+++|++
T Consensus 20 ~~~~~~~~~a~TGtGKT~~~l~p~l~---------------------------------------------~~~~v~i~~ 54 (551)
T 3crv_A 20 RNNFLVALNAPTGSGKTLFSLLVSLE---------------------------------------------VKPKVLFVV 54 (551)
T ss_dssp HTTCEEEEECCTTSSHHHHHHHHHHH---------------------------------------------HCSEEEEEE
T ss_pred HcCCcEEEECCCCccHHHHHHHHHHh---------------------------------------------CCCeEEEEc
Confidence 35789999999999999999999984 135799999
Q ss_pred cchhhhcC
Q psy11948 160 PTRELAIQ 167 (167)
Q Consensus 160 PTRELa~Q 167 (167)
|||+|+.|
T Consensus 55 pt~~l~~q 62 (551)
T 3crv_A 55 RTHNEFYP 62 (551)
T ss_dssp SSGGGHHH
T ss_pred CCHHHHHH
Confidence 99999976
No 149
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=88.38 E-value=0.38 Score=42.42 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=28.3
Q ss_pred CCCchHHHhHHHHHHccCCcEEEEeecCCCccccc
Q psy11948 23 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 57 (167)
Q Consensus 23 ~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~ 57 (167)
..+++-|..++-.++.+ .-.++.++.|+|||...
T Consensus 355 ~~Ln~~Q~~Av~~~l~~-~~~lI~GppGTGKT~ti 388 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQR-PLSLIQGPPGTGKTVTS 388 (800)
T ss_dssp CCCCHHHHHHHHHHHTS-SEEEEECCTTSCHHHHH
T ss_pred cCCCHHHHHHHHHhccC-CeEEEEcCCCCCHHHHH
Confidence 35688999999888876 67889999999999753
No 150
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=87.95 E-value=0.34 Score=42.78 Aligned_cols=34 Identities=21% Similarity=0.134 Sum_probs=28.3
Q ss_pred CCCchHHHhHHHHHHccCCcEEEEeecCCCccccc
Q psy11948 23 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 57 (167)
Q Consensus 23 ~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~ 57 (167)
..+++-|..++-.++.+ .-+++.++.|+|||...
T Consensus 359 ~~Ln~~Q~~Av~~~l~~-~~~lI~GppGTGKT~~i 392 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQR-PLSLIQGPPGTGKTVTS 392 (802)
T ss_dssp CCCCHHHHHHHHHHTTC-SEEEEECSTTSSHHHHH
T ss_pred ccCCHHHHHHHHHHhcC-CCEEEECCCCCCHHHHH
Confidence 45679999999888765 56889999999999753
No 151
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=87.93 E-value=0.067 Score=48.37 Aligned_cols=54 Identities=20% Similarity=0.264 Sum_probs=43.3
Q ss_pred CCcccccc----ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhhh
Q psy11948 72 PTEEDEND----SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVK 147 (167)
Q Consensus 72 ~~~~~~~~----~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 147 (167)
++..|..+ ..+++++++++||+|||++|.+++...+.
T Consensus 87 L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~--------------------------------------- 127 (1010)
T 2xgj_A 87 LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK--------------------------------------- 127 (1010)
T ss_dssp CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH---------------------------------------
T ss_pred CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc---------------------------------------
Confidence 55555443 45789999999999999999998886652
Q ss_pred ccccccceEEEccchhhhcC
Q psy11948 148 KTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 148 ~~~~~~~aLIl~PTRELa~Q 167 (167)
...++||++|||+||.|
T Consensus 128 ---~g~rvL~l~PtkaLa~Q 144 (1010)
T 2xgj_A 128 ---NKQRVIYTSPIKALSNQ 144 (1010)
T ss_dssp ---TTCEEEEEESSHHHHHH
T ss_pred ---cCCeEEEECChHHHHHH
Confidence 23589999999999987
No 152
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=87.56 E-value=0.39 Score=44.30 Aligned_cols=37 Identities=35% Similarity=0.293 Sum_probs=27.9
Q ss_pred CCchHHHhHHHHHHccCCcEEEEeecCCCcccccccchhh
Q psy11948 24 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63 (167)
Q Consensus 24 ~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~l~ 63 (167)
.+|+-|.++|-.. + .++++.|.-|||||....-=++.
T Consensus 10 ~~t~eQ~~~i~~~--~-~~~~v~a~AGSGKT~vl~~ri~~ 46 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--G-QDILVAAAAGSGKTAVLVERMIR 46 (1232)
T ss_dssp CCCHHHHHHHHCC--S-SCEEEEECTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--C-CCEEEEecCCCcHHHHHHHHHHH
Confidence 6799999988532 4 79999999999999855433333
No 153
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=85.62 E-value=0.097 Score=43.05 Aligned_cols=47 Identities=21% Similarity=0.195 Sum_probs=38.4
Q ss_pred ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhhhccccccceEEEc
Q psy11948 80 SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 159 (167)
Q Consensus 80 ~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~aLIl~ 159 (167)
..+++.+++++||+|||.+++.++...+.. ...++|||+
T Consensus 126 ~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-----------------------------------------~~~~vlvl~ 164 (510)
T 2oca_A 126 LVNRRRILNLPTSAGRSLIQALLARYYLEN-----------------------------------------YEGKILIIV 164 (510)
T ss_dssp HHHSEEEEECCSTTTHHHHHHHHHHHHHHH-----------------------------------------CSSEEEEEE
T ss_pred HhcCCcEEEeCCCCCHHHHHHHHHHHHHhC-----------------------------------------CCCeEEEEE
Confidence 346899999999999999999888765531 224899999
Q ss_pred cchhhhcC
Q psy11948 160 PTRELAIQ 167 (167)
Q Consensus 160 PTRELa~Q 167 (167)
||++|+.|
T Consensus 165 P~~~L~~Q 172 (510)
T 2oca_A 165 PTTALTTQ 172 (510)
T ss_dssp SSHHHHHH
T ss_pred CcHHHHHH
Confidence 99999976
No 154
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=85.58 E-value=0.16 Score=45.90 Aligned_cols=46 Identities=24% Similarity=0.252 Sum_probs=38.8
Q ss_pred ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhhhccccccceEEEc
Q psy11948 80 SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 159 (167)
Q Consensus 80 ~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~aLIl~ 159 (167)
..++|+++.++||+|||++|.+++...+. ...++||++
T Consensus 52 l~g~~vlv~apTGsGKTlv~~~~i~~~~~------------------------------------------~g~~vlvl~ 89 (997)
T 4a4z_A 52 EQGDSVFVAAHTSAGKTVVAEYAIAMAHR------------------------------------------NMTKTIYTS 89 (997)
T ss_dssp HTTCEEEEECCTTSCSHHHHHHHHHHHHH------------------------------------------TTCEEEEEE
T ss_pred HcCCCEEEEECCCCcHHHHHHHHHHHHHh------------------------------------------cCCeEEEEe
Confidence 46799999999999999999988875442 236799999
Q ss_pred cchhhhcC
Q psy11948 160 PTRELAIQ 167 (167)
Q Consensus 160 PTRELa~Q 167 (167)
|||+|+.|
T Consensus 90 PtraLa~Q 97 (997)
T 4a4z_A 90 PIKALSNQ 97 (997)
T ss_dssp SCGGGHHH
T ss_pred CCHHHHHH
Confidence 99999986
No 155
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=85.14 E-value=0.15 Score=44.87 Aligned_cols=64 Identities=22% Similarity=0.311 Sum_probs=48.3
Q ss_pred hhhhhhc--ccCCCCcccccc----c------cccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHH
Q psy11948 61 ILTGIVN--KLENPTEEDEND----S------ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEA 128 (167)
Q Consensus 61 ~l~~~~~--~~~~~~~~~~~~----~------~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~ 128 (167)
.+..+.. .+ .++..|... . ..++.+++++||+|||++|++|++..+.
T Consensus 357 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~-------------------- 415 (780)
T 1gm5_A 357 LAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE-------------------- 415 (780)
T ss_dssp HHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHH--------------------
Confidence 4455544 44 677777543 1 1258999999999999999999987663
Q ss_pred HHHHHHHHHhhhcchhhhhccccccceEEEccchhhhcC
Q psy11948 129 EEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ 167 (167)
Q Consensus 129 ~~~~e~~~~~~~~~~~~~~~~~~~~~aLIl~PTRELa~Q 167 (167)
...+++||+|||+||.|
T Consensus 416 ----------------------~g~qvlvlaPtr~La~Q 432 (780)
T 1gm5_A 416 ----------------------AGFQTAFMVPTSILAIQ 432 (780)
T ss_dssp ----------------------HTSCEEEECSCHHHHHH
T ss_pred ----------------------cCCeEEEEeCcHHHHHH
Confidence 13589999999999987
No 156
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=84.62 E-value=0.51 Score=40.43 Aligned_cols=32 Identities=22% Similarity=0.118 Sum_probs=24.8
Q ss_pred CCchHHHhHHHHHHccCCcEEEEeecCCCcccccc
Q psy11948 24 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 58 (167)
Q Consensus 24 ~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~ 58 (167)
.+++-|.+++-. .+ ..+++.|..|||||....
T Consensus 2 ~L~~~Q~~av~~--~~-~~~lV~AgaGSGKT~~l~ 33 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VT-GPCLVLAGAGSGKTRVIT 33 (673)
T ss_dssp CCCHHHHHHHHC--CS-SEEEECCCTTSCHHHHHH
T ss_pred CCCHHHHHHHhC--CC-CCEEEEeCCCCChHHHHH
Confidence 478899998853 23 688999999999997543
No 157
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=82.79 E-value=1.1 Score=38.87 Aligned_cols=33 Identities=24% Similarity=0.200 Sum_probs=26.2
Q ss_pred CCCchHHHhHHHHHHccCCcEEEEeecCCCcccccc
Q psy11948 23 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFG 58 (167)
Q Consensus 23 ~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~ 58 (167)
..+++-|.+++-. .+ ..+++.|.-|||||....
T Consensus 10 ~~Ln~~Q~~av~~--~~-g~~lV~AgAGSGKT~vL~ 42 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TE-GPLLIMAGAGSGKTRVLT 42 (724)
T ss_dssp TTSCHHHHHHHHC--CS-SCEEEEECTTSCHHHHHH
T ss_pred hhCCHHHHHHHhC--CC-CCEEEEEcCCCCHHHHHH
Confidence 4689999998853 23 689999999999998543
No 158
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=82.39 E-value=1.1 Score=31.31 Aligned_cols=31 Identities=19% Similarity=0.118 Sum_probs=21.6
Q ss_pred chHHHhHHHHHH--------ccCCcEEEEeecCCCcccc
Q psy11948 26 TKIQSMVMPSAL--------LARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 26 t~iQ~~~ip~~l--------~~~~d~i~~a~tgsGKt~~ 56 (167)
++-|..++..+. ..+..+++.+++|+|||..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL 54 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHL 54 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHH
Confidence 455666664443 1237899999999999964
No 159
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=80.96 E-value=0.5 Score=40.83 Aligned_cols=43 Identities=21% Similarity=0.182 Sum_probs=36.8
Q ss_pred ccccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhhhccccccceEEEc
Q psy11948 80 SARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILA 159 (167)
Q Consensus 80 ~~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~aLIl~ 159 (167)
..++|+++.++||+|||.+|.+|+++. ..++||++
T Consensus 230 ~~~~~vlv~ApTGSGKT~a~~l~ll~~---------------------------------------------g~~vLVl~ 264 (666)
T 3o8b_A 230 QSFQVAHLHAPTGSGKSTKVPAAYAAQ---------------------------------------------GYKVLVLN 264 (666)
T ss_dssp SSCEEEEEECCTTSCTTTHHHHHHHHT---------------------------------------------TCCEEEEE
T ss_pred HcCCeEEEEeCCchhHHHHHHHHHHHC---------------------------------------------CCeEEEEc
Confidence 467899999999999999999888631 24799999
Q ss_pred cchhhhcC
Q psy11948 160 PTRELAIQ 167 (167)
Q Consensus 160 PTRELa~Q 167 (167)
||||||.|
T Consensus 265 PTReLA~Q 272 (666)
T 3o8b_A 265 PSVAATLG 272 (666)
T ss_dssp SCHHHHHH
T ss_pred chHHHHHH
Confidence 99999987
No 160
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=78.86 E-value=0.32 Score=36.85 Aligned_cols=46 Identities=20% Similarity=0.189 Sum_probs=35.3
Q ss_pred cccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhhhccccccceEEEcc
Q psy11948 81 ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAP 160 (167)
Q Consensus 81 ~~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~aLIl~P 160 (167)
.+++.+++++||+|||.+++.++...+. ....++|||+|
T Consensus 127 ~~~~~ll~~~tGsGKT~~~~~~~~~~~~-----------------------------------------~~~~~~lil~P 165 (282)
T 1rif_A 127 VNRRRILNLPTSAGRSLIQALLARYYLE-----------------------------------------NYEGKILIIVP 165 (282)
T ss_dssp HHSEEEECCCTTSCHHHHHHHHHHHHHH-----------------------------------------HCSSEEEEECS
T ss_pred hcCCeEEEcCCCCCcHHHHHHHHHHHHH-----------------------------------------cCCCeEEEEEC
Confidence 3467788999999999999877665432 11236999999
Q ss_pred chhhhcC
Q psy11948 161 TRELAIQ 167 (167)
Q Consensus 161 TRELa~Q 167 (167)
||+|+.|
T Consensus 166 t~~L~~q 172 (282)
T 1rif_A 166 TTALTTQ 172 (282)
T ss_dssp SHHHHHH
T ss_pred CHHHHHH
Confidence 9999976
No 161
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=78.35 E-value=0.38 Score=38.30 Aligned_cols=43 Identities=30% Similarity=0.298 Sum_probs=36.3
Q ss_pred ceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhhhccccccceEEEccchh
Q psy11948 84 DIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRE 163 (167)
Q Consensus 84 d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~aLIl~PTRE 163 (167)
++++.++||+|||+.++.++...+. ....++|||+||++
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~-----------------------------------------~~~~~~liv~P~~~ 63 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLT-----------------------------------------KYGGKVLMLAPTKP 63 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHH-----------------------------------------HSCSCEEEECSSHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHh-----------------------------------------cCCCeEEEEECCHH
Confidence 8999999999999999999876553 12357999999999
Q ss_pred hhcC
Q psy11948 164 LAIQ 167 (167)
Q Consensus 164 La~Q 167 (167)
|+.|
T Consensus 64 L~~q 67 (494)
T 1wp9_A 64 LVLQ 67 (494)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9976
No 162
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=78.32 E-value=1.6 Score=29.45 Aligned_cols=17 Identities=18% Similarity=0.104 Sum_probs=15.0
Q ss_pred cCCcEEEEeecCCCccc
Q psy11948 39 ARKDIVGAAETGSGKTL 55 (167)
Q Consensus 39 ~~~d~i~~a~tgsGKt~ 55 (167)
....+++.+++|+|||.
T Consensus 26 ~~~~vll~G~~GtGKt~ 42 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFET 42 (143)
T ss_dssp CSSCEEEEEETTCCHHH
T ss_pred CCCcEEEECCCCccHHH
Confidence 34899999999999986
No 163
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=78.20 E-value=1 Score=38.71 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=24.7
Q ss_pred CCchHHHhHHHHHHc----cCCcEEEEeecCCCccccc
Q psy11948 24 TPTKIQSMVMPSALL----ARKDIVGAAETGSGKTLAF 57 (167)
Q Consensus 24 ~pt~iQ~~~ip~~l~----~~~d~i~~a~tgsGKt~~~ 57 (167)
.|+.-|..+|..+.. |.+...+.+-||||||+..
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~ 49 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTV 49 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHH
Confidence 789999988876543 3234667888999998743
No 164
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=77.55 E-value=1.8 Score=36.05 Aligned_cols=40 Identities=25% Similarity=0.132 Sum_probs=25.2
Q ss_pred HHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccc
Q psy11948 15 RALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 15 ~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
..|.+.|. .++.+...+...+..+..+++.++||||||..
T Consensus 237 ~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 237 IDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 44555553 23334444444444447899999999999974
No 165
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=74.33 E-value=0.78 Score=35.16 Aligned_cols=53 Identities=21% Similarity=0.282 Sum_probs=28.6
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccc
Q psy11948 3 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
+|++++-...+++.|.+.- ..|..........-+..++.+++.+++|+|||+.
T Consensus 13 ~~~di~G~~~~~~~l~~~v-~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~l 65 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELV-QYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 65 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHH-HHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHH
T ss_pred CHHHhCCHHHHHHHHHHHH-HHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHH
Confidence 5788776666666666420 0000000000011112236799999999999974
No 166
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=73.97 E-value=1.8 Score=29.24 Aligned_cols=18 Identities=11% Similarity=0.158 Sum_probs=15.4
Q ss_pred cCCcEEEEeecCCCcccc
Q psy11948 39 ARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 39 ~~~d~i~~a~tgsGKt~~ 56 (167)
....+++.+++|+|||..
T Consensus 23 ~~~~vll~G~~GtGKt~l 40 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTG 40 (145)
T ss_dssp CCSCEEEESSTTSSHHHH
T ss_pred CCCCEEEECCCCCCHHHH
Confidence 347999999999999963
No 167
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.50 E-value=0.68 Score=37.94 Aligned_cols=51 Identities=24% Similarity=0.277 Sum_probs=33.7
Q ss_pred CccccCCCCHHHHHHHHHC---CCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccc
Q psy11948 2 AEWVKFNIPETIIRALYQK---GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~---g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
.+|++.+--+..++.|.+. -+.+|--.+...++ ..+.+++.+|.|+|||+.
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~----~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR----APKGALMYGPPGTGKTLL 231 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC----CCCEEEEESCTTSSHHHH
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC----CCCeeEEECcCCCCHHHH
Confidence 3789988777777777642 12344334433332 237899999999999974
No 168
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=72.45 E-value=0.68 Score=40.63 Aligned_cols=35 Identities=34% Similarity=0.488 Sum_probs=25.4
Q ss_pred ccCCCCcccccc-----ccccceeeeecccCccceeeecchh
Q psy11948 68 KLENPTEEDEND-----SARKDIVGAAETGSGKTLAFGIPIL 104 (167)
Q Consensus 68 ~~~~~~~~~~~~-----~~~~d~~~~a~tgsgkt~~~~~p~i 104 (167)
....|+..|... ..+.++++.++||+|||. ++|++
T Consensus 90 r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~l 129 (773)
T 2xau_A 90 RRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQF 129 (773)
T ss_dssp HTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHH
T ss_pred hhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHH
Confidence 335666666544 345779999999999998 56665
No 169
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=70.64 E-value=0.86 Score=41.80 Aligned_cols=43 Identities=28% Similarity=0.236 Sum_probs=36.2
Q ss_pred cceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhhhccccccceEEEccch
Q psy11948 83 KDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTR 162 (167)
Q Consensus 83 ~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~aLIl~PTR 162 (167)
+|.+++++||+|||.+++.+++.... ...++|||+||+
T Consensus 625 ~d~ll~~~TGsGKT~val~aa~~~~~------------------------------------------~g~~vlvlvPt~ 662 (1151)
T 2eyq_A 625 MDRLVCGDVGFGKTEVAMRAAFLAVD------------------------------------------NHKQVAVLVPTT 662 (1151)
T ss_dssp CEEEEECCCCTTTHHHHHHHHHHHHT------------------------------------------TTCEEEEECSSH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHH------------------------------------------hCCeEEEEechH
Confidence 39999999999999999988876542 234899999999
Q ss_pred hhhcC
Q psy11948 163 ELAIQ 167 (167)
Q Consensus 163 ELa~Q 167 (167)
+||.|
T Consensus 663 ~La~Q 667 (1151)
T 2eyq_A 663 LLAQQ 667 (1151)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99987
No 170
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=70.16 E-value=4.6 Score=29.28 Aligned_cols=35 Identities=23% Similarity=0.175 Sum_probs=25.6
Q ss_pred CCCCchHHHhHHHHHHccCCcEEEEeecCCCccccc
Q psy11948 22 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 57 (167)
Q Consensus 22 ~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~ 57 (167)
+..-+.-|..++..+..| .-+.+.+++|+|||..+
T Consensus 5 i~pk~~g~~~~l~~i~~G-e~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTN-TIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCCCSHHHHHHHHHHHHC-SEEEEECCTTSSTTHHH
T ss_pred cccCCHhHHHHHHhccCC-CEEEEECCCCCCHHHHH
Confidence 444455566777777666 77889999999999743
No 171
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=68.28 E-value=1.1 Score=33.61 Aligned_cols=52 Identities=19% Similarity=0.216 Sum_probs=28.3
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHH-HccCCcEEEEeecCCCcccc
Q psy11948 3 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSA-LLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~-l~~~~d~i~~a~tgsGKt~~ 56 (167)
+|+++.-.+..++.|...=. .|.. ....+... +...+.+++.+++|+|||..
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~-~~~~-~~~~~~~~~~~~~~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVE-LPLK-HPELFEKVGIEPPKGILLYGPPGTGKTLL 67 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTH-HHHH-CHHHHHHHCCCCCSEEEEESSSSSSHHHH
T ss_pred CHHHhcCHHHHHHHHHHHHH-HHhh-CHHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 57777766666666654210 0000 00111110 12337899999999999963
No 172
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=67.72 E-value=1 Score=36.47 Aligned_cols=24 Identities=33% Similarity=0.122 Sum_probs=20.7
Q ss_pred cccceeeeecccCccceeeecchh
Q psy11948 81 ARKDIVGAAETGSGKTLAFGIPIL 104 (167)
Q Consensus 81 ~~~d~~~~a~tgsgkt~~~~~p~i 104 (167)
.+++.+++++||+|||..++.++.
T Consensus 107 ~~~~~ll~~~TGsGKT~~~l~~i~ 130 (472)
T 2fwr_A 107 VDKRGCIVLPTGSGKTHVAMAAIN 130 (472)
T ss_dssp TTTEEEEECCTTSCHHHHHHHHHH
T ss_pred hcCCEEEEeCCCCCHHHHHHHHHH
Confidence 446799999999999999988775
No 173
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=67.44 E-value=1.6 Score=37.82 Aligned_cols=18 Identities=44% Similarity=0.440 Sum_probs=16.6
Q ss_pred ccccceeeeecccCccce
Q psy11948 80 SARKDIVGAAETGSGKTL 97 (167)
Q Consensus 80 ~~~~d~~~~a~tgsgkt~ 97 (167)
..+++++++++||+|||.
T Consensus 153 l~rk~vlv~apTGSGKT~ 170 (677)
T 3rc3_A 153 MQRKIIFHSGPTNSGKTY 170 (677)
T ss_dssp SCCEEEEEECCTTSSHHH
T ss_pred cCCCEEEEEcCCCCCHHH
Confidence 577899999999999997
No 174
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=66.14 E-value=3.3 Score=28.23 Aligned_cols=15 Identities=33% Similarity=0.315 Sum_probs=13.9
Q ss_pred CcEEEEeecCCCccc
Q psy11948 41 KDIVGAAETGSGKTL 55 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~ 55 (167)
..+++.+++|+|||.
T Consensus 37 ~~~~l~G~~G~GKTt 51 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSH 51 (149)
T ss_dssp SEEEEESSSTTTTCH
T ss_pred CEEEEECCCCCCHHH
Confidence 789999999999986
No 175
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=64.36 E-value=7.5 Score=29.96 Aligned_cols=49 Identities=20% Similarity=0.289 Sum_probs=29.3
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHc----cCCcEEEEeecCCCcccc
Q psy11948 2 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALL----ARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~----~~~d~i~~a~tgsGKt~~ 56 (167)
.+|++++=.+.+++.|.+.=. .|.. .|.++. ..+.+++.+++|+|||+.
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYL 61 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHHHH
Confidence 368888866777776664210 0100 012221 126799999999999973
No 176
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=64.33 E-value=1.4 Score=32.51 Aligned_cols=24 Identities=33% Similarity=0.122 Sum_probs=19.6
Q ss_pred cccceeeeecccCccceeeecchh
Q psy11948 81 ARKDIVGAAETGSGKTLAFGIPIL 104 (167)
Q Consensus 81 ~~~d~~~~a~tgsgkt~~~~~p~i 104 (167)
.+++.+++++||+|||..++.++.
T Consensus 107 ~~~~~ll~~~tG~GKT~~a~~~~~ 130 (237)
T 2fz4_A 107 VDKRGCIVLPTGSGKTHVAMAAIN 130 (237)
T ss_dssp TTSEEEEEESSSTTHHHHHHHHHH
T ss_pred hCCCEEEEeCCCCCHHHHHHHHHH
Confidence 346699999999999998877654
No 177
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=63.96 E-value=2.4 Score=30.40 Aligned_cols=15 Identities=33% Similarity=0.570 Sum_probs=13.6
Q ss_pred CcEEEEeecCCCccc
Q psy11948 41 KDIVGAAETGSGKTL 55 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~ 55 (167)
+-+++++|+|+||+.
T Consensus 2 RpIVi~GPSG~GK~T 16 (186)
T 1ex7_A 2 RPIVISGPSGTGKST 16 (186)
T ss_dssp CCEEEECCTTSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 568999999999986
No 178
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=63.91 E-value=1.1 Score=33.93 Aligned_cols=50 Identities=22% Similarity=0.395 Sum_probs=25.8
Q ss_pred ccccCCCCHHHHHHHHHCC---CCCCchHHHhHHHHHHccCCcEEEEeecCCCcccc
Q psy11948 3 EWVKFNIPETIIRALYQKG---FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~g---~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
+|++++-.+.+.+.|.+.= +..+.-.+...+ .-.+.+++.+++|+|||+.
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l----~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGL----VTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTC----CCCSEEEEESSTTSCHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCC----CCCCeEEEECCCCCcHHHH
Confidence 6888887677777766421 111111111111 1123499999999999974
No 179
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=62.45 E-value=3.1 Score=33.36 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=18.7
Q ss_pred CcEEEEeecCCCcccccccchhhhhh
Q psy11948 41 KDIVGAAETGSGKTLAFGIPILTGIV 66 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~~lp~l~~~~ 66 (167)
.++++.++||+|||..+ -.++..+.
T Consensus 54 ~h~~i~G~tGsGKs~~~-~~li~~~~ 78 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVLL-RELAYTGL 78 (437)
T ss_dssp GCEEEEECTTSSHHHHH-HHHHHHHH
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHH
Confidence 78999999999999864 33444443
No 180
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=62.24 E-value=2.6 Score=28.73 Aligned_cols=16 Identities=38% Similarity=0.391 Sum_probs=14.2
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
..+++.++.|+|||..
T Consensus 44 ~~~ll~G~~G~GKT~l 59 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAI 59 (195)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CceEEECCCCCCHHHH
Confidence 6799999999999974
No 181
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=62.22 E-value=5.3 Score=40.57 Aligned_cols=47 Identities=15% Similarity=0.208 Sum_probs=31.8
Q ss_pred HHHHHHHHHCCCCCCchH-HHhHHHH--HHccCCcEEEEeecCCCcccccc
Q psy11948 11 ETIIRALYQKGFKTPTKI-QSMVMPS--ALLARKDIVGAAETGSGKTLAFG 58 (167)
Q Consensus 11 ~~l~~~l~~~g~~~pt~i-Q~~~ip~--~l~~~~d~i~~a~tgsGKt~~~~ 58 (167)
..+.+.+.+.|+. |++. -.+++.. .+.-++.+++.+++|+|||.++-
T Consensus 875 ~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 875 KKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 5566677788884 4553 3344422 23344789999999999999865
No 182
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=61.97 E-value=9.1 Score=29.33 Aligned_cols=48 Identities=19% Similarity=0.247 Sum_probs=29.0
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCchHHHhHHHHHHc----cCCcEEEEeecCCCcccc
Q psy11948 3 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALL----ARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~----~~~d~i~~a~tgsGKt~~ 56 (167)
+|+++.-....++.|...=. .|. ..|.++. ..+.+++.+++|+|||+.
T Consensus 16 ~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~l 67 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYL 67 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHH
T ss_pred CHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 58888777777777764310 011 1111111 125799999999999974
No 183
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=61.14 E-value=2.5 Score=29.55 Aligned_cols=16 Identities=25% Similarity=0.335 Sum_probs=13.9
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
+-+++.+++|+|||..
T Consensus 6 ~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 6788999999999973
No 184
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=60.50 E-value=1.2 Score=33.01 Aligned_cols=49 Identities=18% Similarity=0.143 Sum_probs=27.4
Q ss_pred ccccCCCCHHHHHHHHHCC--CCCCchHHHhHHHHH-HccCCcEEEEeecCCCcccc
Q psy11948 3 EWVKFNIPETIIRALYQKG--FKTPTKIQSMVMPSA-LLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~g--~~~pt~iQ~~~ip~~-l~~~~d~i~~a~tgsGKt~~ 56 (167)
+|+++.-.+.....+.+.- |..+ ..+..+ +.-.+.+++.+++|+|||..
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~-----~~~~~~~~~~~~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNP-----SRFHEMGARIPKGVLLVGPPGVGKTHL 65 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCH-----HHHHHTTCCCCSEEEEECCTTSSHHHH
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCH-----HHHHHcCCCCCCeEEEECCCCCCHHHH
Confidence 6788776666666555431 1111 111111 11123489999999999963
No 185
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=58.99 E-value=3 Score=28.17 Aligned_cols=15 Identities=33% Similarity=0.282 Sum_probs=12.6
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
-+++.++.|||||..
T Consensus 3 ~I~l~G~~GsGKsT~ 17 (179)
T 3lw7_A 3 VILITGMPGSGKSEF 17 (179)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477899999999873
No 186
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=58.92 E-value=11 Score=31.18 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=23.3
Q ss_pred CCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccc
Q psy11948 21 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 21 g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
.+---..+=..++-.+..+ ..+++.+++|+|||..
T Consensus 23 ~ivGq~~~i~~l~~al~~~-~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG-ESVFLLGPPGIAKSLI 57 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT-CEEEEECCSSSSHHHH
T ss_pred hhHHHHHHHHHHHHHHhcC-CeeEeecCchHHHHHH
Confidence 3433333334444455566 8999999999999973
No 187
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=58.77 E-value=3.2 Score=29.26 Aligned_cols=16 Identities=31% Similarity=0.314 Sum_probs=14.3
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
..+++.+++|+|||..
T Consensus 55 ~~~~l~G~~GtGKT~l 70 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYL 70 (202)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 6799999999999974
No 188
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=58.70 E-value=5.3 Score=31.75 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=17.6
Q ss_pred HHHHccCC-cEEEEeecCCCcccccc
Q psy11948 34 PSALLARK-DIVGAAETGSGKTLAFG 58 (167)
Q Consensus 34 p~~l~~~~-d~i~~a~tgsGKt~~~~ 58 (167)
..++.|.+ .|++-+.||||||.+..
T Consensus 98 ~~~l~G~N~tifAYGQTGSGKTyTM~ 123 (359)
T 3nwn_A 98 SQALDGYNGTIMCYGQTGAGKTYTMM 123 (359)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHhCCCCEEEEEeCCCCCCccEEeC
Confidence 44566622 36678889999998764
No 189
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=58.52 E-value=5.3 Score=29.50 Aligned_cols=17 Identities=35% Similarity=0.524 Sum_probs=14.9
Q ss_pred CCcEEEEeecCCCcccc
Q psy11948 40 RKDIVGAAETGSGKTLA 56 (167)
Q Consensus 40 ~~d~i~~a~tgsGKt~~ 56 (167)
...+++.+++|+|||..
T Consensus 29 ~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELI 45 (265)
T ss_dssp CSCEEEECCTTSCHHHH
T ss_pred CCCEEEECCCCCcHHHH
Confidence 37899999999999963
No 190
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.88 E-value=1.9 Score=35.04 Aligned_cols=50 Identities=20% Similarity=0.245 Sum_probs=29.5
Q ss_pred ccccCCCCHHHHHHHHHC---CCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccc
Q psy11948 3 EWVKFNIPETIIRALYQK---GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~---g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
+|++.+=-+..++.|++. -+.+|--.+...+ .-.+.+++.+|.|+|||+.
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi----~~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI----AQPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC----CCCCCEEEESCSSSSHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC----CCCCceEEeCCCCCCHHHH
Confidence 688877445555555532 1223322333222 1247899999999999974
No 191
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=57.85 E-value=5.1 Score=31.60 Aligned_cols=19 Identities=53% Similarity=0.511 Sum_probs=15.9
Q ss_pred ccCCcEEEEeecCCCcccc
Q psy11948 38 LARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 38 ~~~~d~i~~a~tgsGKt~~ 56 (167)
..+..+++.++||+|||..
T Consensus 173 ~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HTTCCEEEEESSSSCHHHH
T ss_pred hcCCEEEEECCCCCCHHHH
Confidence 3448999999999999974
No 192
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=57.78 E-value=3.3 Score=29.60 Aligned_cols=17 Identities=24% Similarity=0.079 Sum_probs=14.9
Q ss_pred CCcEEEEeecCCCcccc
Q psy11948 40 RKDIVGAAETGSGKTLA 56 (167)
Q Consensus 40 ~~d~i~~a~tgsGKt~~ 56 (167)
+..+++.+++|+|||..
T Consensus 52 ~~~~ll~G~~G~GKT~l 68 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHL 68 (242)
T ss_dssp CSEEEEECSTTSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 37899999999999973
No 193
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=57.25 E-value=13 Score=28.20 Aligned_cols=45 Identities=16% Similarity=0.088 Sum_probs=31.6
Q ss_pred HHHHHHHHHCCCCCCchHHHhH-HHHHHccC----CcEEEEeecCCCcccccc
Q psy11948 11 ETIIRALYQKGFKTPTKIQSMV-MPSALLAR----KDIVGAAETGSGKTLAFG 58 (167)
Q Consensus 11 ~~l~~~l~~~g~~~pt~iQ~~~-ip~~l~~~----~d~i~~a~tgsGKt~~~~ 58 (167)
..+.+.|+-+||. +++... +-..+.+. +.+++.++.|+|||+.+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 4677888888876 555433 34555552 259999999999998554
No 194
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=57.18 E-value=2 Score=35.96 Aligned_cols=53 Identities=26% Similarity=0.133 Sum_probs=29.6
Q ss_pred ccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhhhccccccceEEEccc
Q psy11948 82 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 161 (167)
Q Consensus 82 ~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~aLIl~PT 161 (167)
.++++++++||+|||++++ +++..++...-... ......++|||+||
T Consensus 198 ~~~~ll~~~TGsGKT~~~~-~~~~~l~~~~~~~~--------------------------------~~~~~~~vlil~P~ 244 (590)
T 3h1t_A 198 KKRSLITMATGTGKTVVAF-QISWKLWSARWNRT--------------------------------GDYRKPRILFLADR 244 (590)
T ss_dssp CSEEEEEECTTSCHHHHHH-HHHHHHHHTTCCSS--------------------------------CSSSCCCEEEEEC-
T ss_pred CCceEEEecCCCChHHHHH-HHHHHHHhcccccc--------------------------------cccCCCeEEEEeCC
Confidence 4668999999999999954 45555542210000 01245789999999
Q ss_pred hhhhcC
Q psy11948 162 RELAIQ 167 (167)
Q Consensus 162 RELa~Q 167 (167)
++|+.|
T Consensus 245 ~~L~~Q 250 (590)
T 3h1t_A 245 NVLVDD 250 (590)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 999987
No 195
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.95 E-value=1.5 Score=35.86 Aligned_cols=50 Identities=24% Similarity=0.261 Sum_probs=28.8
Q ss_pred ccccCCCCHHHHHHHHHC---CCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccc
Q psy11948 3 EWVKFNIPETIIRALYQK---GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~---g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
+|++.+=-+..++.|.+. -+.+|--.+...+ .-.+.+++.+|.|+|||+.
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~----~~prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI----KPPKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC----CCCCEEEEESCTTSSHHHH
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC----CCCCeEEEECCCCCcHHHH
Confidence 578877545555555432 1222222222222 1237899999999999974
No 196
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=56.88 E-value=3.4 Score=31.12 Aligned_cols=17 Identities=35% Similarity=0.411 Sum_probs=14.6
Q ss_pred CcEEEEeecCCCccccc
Q psy11948 41 KDIVGAAETGSGKTLAF 57 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~ 57 (167)
.-+.+.++||||||..+
T Consensus 26 ~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTI 42 (261)
T ss_dssp EEEEEECSTTCSHHHHH
T ss_pred CEEEEECCCCccHHHHH
Confidence 67889999999999754
No 197
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=56.62 E-value=2.7 Score=28.66 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=14.1
Q ss_pred CCcEEEEeecCCCccc
Q psy11948 40 RKDIVGAAETGSGKTL 55 (167)
Q Consensus 40 ~~d~i~~a~tgsGKt~ 55 (167)
...+++.+++|+|||.
T Consensus 43 ~~~vll~G~~G~GKT~ 58 (187)
T 2p65_A 43 KNNPILLGDPGVGKTA 58 (187)
T ss_dssp SCEEEEESCGGGCHHH
T ss_pred CCceEEECCCCCCHHH
Confidence 3679999999999996
No 198
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=56.50 E-value=3.9 Score=29.13 Aligned_cols=17 Identities=24% Similarity=0.495 Sum_probs=14.6
Q ss_pred CcEEEEeecCCCccccc
Q psy11948 41 KDIVGAAETGSGKTLAF 57 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~ 57 (167)
+-+.+.+++|+|||...
T Consensus 5 ~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 77899999999999743
No 199
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.45 E-value=3.6 Score=34.03 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=30.9
Q ss_pred ccccCCCCHHHHHHHHHC---CCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccc
Q psy11948 3 EWVKFNIPETIIRALYQK---GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~---g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
+|++.+=-+..++.|++. -+.+|--.+...+ .-.+.+++.+|.|+|||+.
T Consensus 207 t~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi----~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 207 TYSDVGGCKDQIEKLREVVELPLLSPERFATLGI----DPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp CCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTC----CCCSEEEECSCTTSSHHHH
T ss_pred CHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCC----CCCCceEeeCCCCCcHHHH
Confidence 688888666666666642 1222222222221 2247899999999999974
No 200
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=56.03 E-value=1.5 Score=33.03 Aligned_cols=49 Identities=18% Similarity=0.143 Sum_probs=27.1
Q ss_pred ccccCCCCHHHHHHHHHCC--CCCCchHHHhHHHHH-HccCCcEEEEeecCCCcccc
Q psy11948 3 EWVKFNIPETIIRALYQKG--FKTPTKIQSMVMPSA-LLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~g--~~~pt~iQ~~~ip~~-l~~~~d~i~~a~tgsGKt~~ 56 (167)
+|+++.-.+.+.+.+.+.- |..+ ..+..+ +.-.+.+++.+++|+|||..
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~-----~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNP-----SRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCH-----HHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCH-----HHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 5777776666666665431 1111 111111 01113489999999999963
No 201
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=56.00 E-value=3.6 Score=29.50 Aligned_cols=16 Identities=31% Similarity=0.264 Sum_probs=13.8
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.=+++.+++|+|||..
T Consensus 9 ~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred cEEEEECcCCCCHHHH
Confidence 6688999999999974
No 202
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=55.62 E-value=5.4 Score=31.08 Aligned_cols=18 Identities=39% Similarity=0.497 Sum_probs=15.4
Q ss_pred cCCcEEEEeecCCCcccc
Q psy11948 39 ARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 39 ~~~d~i~~a~tgsGKt~~ 56 (167)
.+..+.+.++||+|||..
T Consensus 170 ~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HTCCEEEEESTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 348999999999999973
No 203
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=55.60 E-value=13 Score=28.95 Aligned_cols=16 Identities=50% Similarity=0.611 Sum_probs=14.6
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
..+++.+++|+|||..
T Consensus 52 ~~vll~GppGtGKT~l 67 (363)
T 3hws_A 52 SNILLIGPTGSGKTLL 67 (363)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 6899999999999974
No 204
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=55.55 E-value=3.6 Score=30.60 Aligned_cols=14 Identities=36% Similarity=0.079 Sum_probs=12.1
Q ss_pred EEEEeecCCCcccc
Q psy11948 43 IVGAAETGSGKTLA 56 (167)
Q Consensus 43 ~i~~a~tgsGKt~~ 56 (167)
+++++++|||||..
T Consensus 4 i~I~G~~GSGKSTl 17 (253)
T 2ze6_A 4 HLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCcCHHHH
Confidence 67899999999874
No 205
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=54.98 E-value=6.1 Score=31.29 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=17.6
Q ss_pred HHHHccCCc--EEEEeecCCCcccccc
Q psy11948 34 PSALLARKD--IVGAAETGSGKTLAFG 58 (167)
Q Consensus 34 p~~l~~~~d--~i~~a~tgsGKt~~~~ 58 (167)
..++.| .+ |++-+.||||||.+..
T Consensus 86 ~~~l~G-~n~tifAYGqTGSGKTyTm~ 111 (354)
T 3gbj_A 86 QNAFDG-YNACIFAYGQTGSGKSYTMM 111 (354)
T ss_dssp HHHHTT-CCEEEEEEECTTSSHHHHHT
T ss_pred HHHhCC-ceeEEEeeCCCCCCCceEEe
Confidence 345566 44 5677889999999874
No 206
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=54.82 E-value=3.9 Score=28.35 Aligned_cols=18 Identities=28% Similarity=0.237 Sum_probs=14.6
Q ss_pred CcEEEEeecCCCcccccc
Q psy11948 41 KDIVGAAETGSGKTLAFG 58 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~~ 58 (167)
.=+.+.+++|+|||..+-
T Consensus 10 ei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 457789999999998654
No 207
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=54.73 E-value=4.4 Score=30.53 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=14.1
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
..+++.+++|+|||..
T Consensus 68 ~~vll~G~~GtGKT~l 83 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTV 83 (309)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4699999999999974
No 208
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=54.64 E-value=3.9 Score=28.04 Aligned_cols=16 Identities=19% Similarity=0.229 Sum_probs=13.8
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+++++..|||||..
T Consensus 4 ~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGI 19 (178)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 5688999999999874
No 209
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=54.56 E-value=6.5 Score=30.78 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=17.8
Q ss_pred HHHHccCCc--EEEEeecCCCcccccc
Q psy11948 34 PSALLARKD--IVGAAETGSGKTLAFG 58 (167)
Q Consensus 34 p~~l~~~~d--~i~~a~tgsGKt~~~~ 58 (167)
..++.| .+ ++.-+.||||||.+..
T Consensus 71 ~~~l~G-~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 71 KDVLEG-YNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp HHHHTT-CCEEEEEECSTTSSHHHHHT
T ss_pred HHHhCC-CeEEEEEECCCCCCCceEec
Confidence 344566 44 6678899999999875
No 210
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=54.54 E-value=3.7 Score=33.74 Aligned_cols=13 Identities=46% Similarity=0.526 Sum_probs=10.7
Q ss_pred ceEEEccchhhhc
Q psy11948 154 YALILAPTRELAI 166 (167)
Q Consensus 154 ~aLIl~PTRELa~ 166 (167)
..+|++||++++.
T Consensus 186 ~~lVlTpT~~aa~ 198 (446)
T 3vkw_A 186 EDLILVPGRQAAE 198 (446)
T ss_dssp TCEEEESCHHHHH
T ss_pred CeEEEeCCHHHHH
Confidence 3599999999874
No 211
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=54.41 E-value=2.9 Score=37.96 Aligned_cols=46 Identities=20% Similarity=0.057 Sum_probs=35.0
Q ss_pred ccceeeeecccCccceeeecchhhhhhhccCCCCCCCCCCCcchhHHHHHHHHHHHhhhcchhhhhccccccceEEEccc
Q psy11948 82 RKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPT 161 (167)
Q Consensus 82 ~~d~~~~a~tgsgkt~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~aLIl~PT 161 (167)
+++.+++++||+|||+++ ++++..+.. .....++|||||+
T Consensus 300 ~~~gli~~~TGSGKT~t~-~~l~~ll~~---------------------------------------~~~~~rvLvlvpr 339 (1038)
T 2w00_A 300 ESGGYIWHTTGSGKTLTS-FKAARLATE---------------------------------------LDFIDKVFFVVDR 339 (1038)
T ss_dssp GGSEEEEECTTSSHHHHH-HHHHHHHTT---------------------------------------CTTCCEEEEEECG
T ss_pred CCCEEEEecCCCCHHHHH-HHHHHHHHh---------------------------------------cCCCceEEEEeCc
Confidence 468899999999999997 666643321 1123589999999
Q ss_pred hhhhcC
Q psy11948 162 RELAIQ 167 (167)
Q Consensus 162 RELa~Q 167 (167)
++|+.|
T Consensus 340 ~eL~~Q 345 (1038)
T 2w00_A 340 KDLDYQ 345 (1038)
T ss_dssp GGCCHH
T ss_pred HHHHHH
Confidence 999987
No 212
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=54.16 E-value=4.1 Score=31.89 Aligned_cols=15 Identities=40% Similarity=0.308 Sum_probs=12.6
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
=++++++||+|||..
T Consensus 12 ~i~i~GptgsGKt~l 26 (316)
T 3foz_A 12 AIFLMGPTASGKTAL 26 (316)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 367899999999964
No 213
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=54.13 E-value=4 Score=32.23 Aligned_cols=15 Identities=33% Similarity=0.359 Sum_probs=13.1
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
-+++.++||+|||..
T Consensus 42 lIvI~GPTgsGKTtL 56 (339)
T 3a8t_A 42 LLVLMGATGTGKSRL 56 (339)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 588999999999973
No 214
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=54.06 E-value=5.3 Score=31.79 Aligned_cols=22 Identities=27% Similarity=0.170 Sum_probs=16.5
Q ss_pred HccCCc--EEEEeecCCCcccccc
Q psy11948 37 LLARKD--IVGAAETGSGKTLAFG 58 (167)
Q Consensus 37 l~~~~d--~i~~a~tgsGKt~~~~ 58 (167)
+.++.+ +++-+.||||||.+..
T Consensus 80 ~~~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 80 YENGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp HHHCCEEEEEEECCTTSSHHHHHH
T ss_pred ccCCceeEEEeeCCCCCCCCEEEe
Confidence 433355 6899999999998763
No 215
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=54.05 E-value=7.1 Score=30.88 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=17.6
Q ss_pred HHHHccCC-cEEEEeecCCCcccccc
Q psy11948 34 PSALLARK-DIVGAAETGSGKTLAFG 58 (167)
Q Consensus 34 p~~l~~~~-d~i~~a~tgsGKt~~~~ 58 (167)
..++.|.+ .++.-+.||||||....
T Consensus 71 ~~~l~G~n~tifAYGqTGSGKTyTM~ 96 (349)
T 1t5c_A 71 DSAIQGYNGTIFAYGQTASGKTYTMM 96 (349)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHcCCccceeeecCCCCCCCeEEe
Confidence 33456622 36678899999999874
No 216
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=54.02 E-value=6.1 Score=31.56 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=18.2
Q ss_pred HHHHHccCCc--EEEEeecCCCcccccc
Q psy11948 33 MPSALLARKD--IVGAAETGSGKTLAFG 58 (167)
Q Consensus 33 ip~~l~~~~d--~i~~a~tgsGKt~~~~ 58 (167)
+..++.| .+ ++.-+.||||||.+..
T Consensus 72 v~~~l~G-~n~tifAYGqTGSGKTyTM~ 98 (369)
T 3cob_A 72 VQSAVDG-YNVCIFAYGQTGSGKTFTIY 98 (369)
T ss_dssp HHHHHTT-CEEEEEEEECTTSSHHHHHT
T ss_pred hHhhhcC-CceEEEEECCCCCCCeEeec
Confidence 4455666 54 5678889999998863
No 217
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=53.82 E-value=6.8 Score=31.10 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=16.9
Q ss_pred HHHccCCc--EEEEeecCCCcccccc
Q psy11948 35 SALLARKD--IVGAAETGSGKTLAFG 58 (167)
Q Consensus 35 ~~l~~~~d--~i~~a~tgsGKt~~~~ 58 (167)
.++.| .+ +++-+.||||||.+..
T Consensus 83 ~~l~G-~n~tifAYGqTGSGKTyTM~ 107 (359)
T 1x88_A 83 EVIMG-YNCTIFAYGQTGTGKTFTME 107 (359)
T ss_dssp HHHTT-CEEEEEEEECTTSSHHHHHT
T ss_pred HHhCC-CceEEEEeCCCCCCCceEEe
Confidence 34566 44 6678889999998764
No 218
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=53.74 E-value=4.2 Score=31.92 Aligned_cols=15 Identities=27% Similarity=0.171 Sum_probs=12.5
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
=+++.+|||+|||..
T Consensus 5 ~i~i~GptgsGKt~l 19 (322)
T 3exa_A 5 LVAIVGPTAVGKTKT 19 (322)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCcCCHHHH
Confidence 367899999999964
No 219
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=53.67 E-value=7.2 Score=31.16 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=16.8
Q ss_pred HHHccCC-cEEEEeecCCCcccccc
Q psy11948 35 SALLARK-DIVGAAETGSGKTLAFG 58 (167)
Q Consensus 35 ~~l~~~~-d~i~~a~tgsGKt~~~~ 58 (167)
.++.|.+ .|++-+.||||||.+..
T Consensus 96 ~~l~G~n~tifAYGqTGSGKTyTM~ 120 (372)
T 3b6u_A 96 SVLQGFNGTIFAYGQTGTGKTYTME 120 (372)
T ss_dssp HHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHhCCCeeeEEeecCCCCCCCEeEe
Confidence 3456622 36678889999998763
No 220
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=53.65 E-value=4.3 Score=29.71 Aligned_cols=51 Identities=16% Similarity=0.122 Sum_probs=28.4
Q ss_pred CccccCCCCHHHHHHHHHCC--CCCCchHHHhHHHHHHccCCcEEEEeecCCCcccc
Q psy11948 2 AEWVKFNIPETIIRALYQKG--FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~g--~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
.+|+++.-.+.+++.|.+.- +..|....... ....+.+++.+++|+|||..
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g----~~~~~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLG----AKVPKGALLLGPPGCGKTLL 55 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC----------CCCCCEEEEESCTTSSHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcC----CCCCceEEEECCCCCCHHHH
Confidence 36788776666666665420 11121111111 12236799999999999963
No 221
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=53.65 E-value=7.3 Score=30.95 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=17.3
Q ss_pred HHHHccCCc--EEEEeecCCCcccccc
Q psy11948 34 PSALLARKD--IVGAAETGSGKTLAFG 58 (167)
Q Consensus 34 p~~l~~~~d--~i~~a~tgsGKt~~~~ 58 (167)
..++.| .+ |++-+.||||||.+..
T Consensus 97 ~~~l~G-~N~tIfAYGqTGSGKTyTM~ 122 (358)
T 2nr8_A 97 SQALDG-YNGTIMCYGQTGAGKTYTMM 122 (358)
T ss_dssp HHHHTT-CCEEEEEEESTTSSHHHHHT
T ss_pred HHHhCC-CceEEEEECCCCCCCceEec
Confidence 344566 44 5677889999998864
No 222
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=53.23 E-value=4.2 Score=28.55 Aligned_cols=16 Identities=31% Similarity=0.368 Sum_probs=13.7
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+.+.+++|+|||..
T Consensus 8 ~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSL 23 (205)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred cEEEEECcCCCCHHHH
Confidence 5678899999999974
No 223
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=53.18 E-value=4 Score=32.29 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=14.3
Q ss_pred CcEEEEeecCCCccccc
Q psy11948 41 KDIVGAAETGSGKTLAF 57 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~ 57 (167)
.-+++.++||||||...
T Consensus 124 g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp EEEEEECSTTSCHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46889999999999754
No 224
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=52.99 E-value=4.6 Score=27.92 Aligned_cols=16 Identities=31% Similarity=0.316 Sum_probs=14.0
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
..+++.+++|||||..
T Consensus 6 ~~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSV 21 (185)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5789999999999964
No 225
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=52.98 E-value=4.6 Score=28.02 Aligned_cols=16 Identities=25% Similarity=0.362 Sum_probs=13.9
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+++.+++|+|||..
T Consensus 10 ~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTI 25 (191)
T ss_dssp EEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 5688999999999974
No 226
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=52.95 E-value=4.4 Score=27.69 Aligned_cols=15 Identities=33% Similarity=0.288 Sum_probs=12.6
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
-+++.++.|||||..
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 478899999999873
No 227
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=52.79 E-value=16 Score=28.52 Aligned_cols=17 Identities=41% Similarity=0.495 Sum_probs=14.7
Q ss_pred CCcEEEEeecCCCcccc
Q psy11948 40 RKDIVGAAETGSGKTLA 56 (167)
Q Consensus 40 ~~d~i~~a~tgsGKt~~ 56 (167)
.+.+++.+++|+|||..
T Consensus 117 ~~~vLl~GppGtGKT~l 133 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLI 133 (357)
T ss_dssp CSEEEEESSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 36799999999999974
No 228
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=52.62 E-value=7.2 Score=31.06 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=17.0
Q ss_pred HHHccCC-cEEEEeecCCCcccccc
Q psy11948 35 SALLARK-DIVGAAETGSGKTLAFG 58 (167)
Q Consensus 35 ~~l~~~~-d~i~~a~tgsGKt~~~~ 58 (167)
.++.|.+ .++.-+.||||||.+..
T Consensus 84 ~~l~G~N~tifAYGqTGSGKTyTm~ 108 (366)
T 2zfi_A 84 HAFEGYNVCIFAYGQTGAGKSYTMM 108 (366)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHhcCCeeEEEEeCCCCCCCceEee
Confidence 3456622 36678889999998864
No 229
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=52.47 E-value=6.6 Score=31.02 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=16.5
Q ss_pred HHHccCC-cEEEEeecCCCccccc
Q psy11948 35 SALLARK-DIVGAAETGSGKTLAF 57 (167)
Q Consensus 35 ~~l~~~~-d~i~~a~tgsGKt~~~ 57 (167)
.++.|.+ .|++-+.||||||.+.
T Consensus 89 ~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 89 KLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHTCCEEEEEESSTTSSHHHHH
T ss_pred HhhCCCceEEEEecCCCCCCCeEE
Confidence 3456622 3567888999999986
No 230
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=51.93 E-value=7.3 Score=30.55 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=18.9
Q ss_pred HHHHHHccCCc--EEEEeecCCCcccccc
Q psy11948 32 VMPSALLARKD--IVGAAETGSGKTLAFG 58 (167)
Q Consensus 32 ~ip~~l~~~~d--~i~~a~tgsGKt~~~~ 58 (167)
.+..++.| .+ ++.-+.||||||.+..
T Consensus 72 lv~~~l~G-~n~tifAYGqTGSGKTyTm~ 99 (330)
T 2h58_A 72 LVTSCIDG-FNVCIFAYGQTGAGKTYTME 99 (330)
T ss_dssp HHHHHHTT-CCEEEEEESSTTSSHHHHHT
T ss_pred HHHHHhCC-CEEEEEeECCCCCCCcEEEe
Confidence 34456677 44 6678889999998874
No 231
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=51.87 E-value=16 Score=30.80 Aligned_cols=35 Identities=17% Similarity=0.111 Sum_probs=27.5
Q ss_pred CCchHHHhHHHHHHccCCcEEEEeecCCCccccccc
Q psy11948 24 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 59 (167)
Q Consensus 24 ~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~l 59 (167)
.++|.|...+-.+. +.+.+++..+-++|||.....
T Consensus 163 ~l~p~Q~~i~~~l~-~~r~~~i~~~Rq~GKS~~~a~ 197 (592)
T 3cpe_A 163 QLRDYQRDMLKIMS-SKRMTVCNLSRQLGKTTVVAI 197 (592)
T ss_dssp CCCHHHHHHHHHHH-HCSEEEEEECSSSCHHHHHHH
T ss_pred cCCHHHHHHHHhhc-cccEEEEEEcCccChHHHHHH
Confidence 57999999887663 337788999999999986654
No 232
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=51.85 E-value=7.2 Score=31.15 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=16.8
Q ss_pred HHHccCCc--EEEEeecCCCcccccc
Q psy11948 35 SALLARKD--IVGAAETGSGKTLAFG 58 (167)
Q Consensus 35 ~~l~~~~d--~i~~a~tgsGKt~~~~ 58 (167)
.++.| .+ |++-+.||||||.+..
T Consensus 95 ~~l~G-~n~tifAYGqTGSGKTyTm~ 119 (373)
T 2wbe_C 95 EVLNG-YNCTVFAYGQTGTGKTHTMV 119 (373)
T ss_dssp HHHHT-CCEEEEEECSTTSSHHHHHT
T ss_pred HHhCC-ceEEEEeecCCCCCcceecc
Confidence 34566 44 6678889999998764
No 233
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=51.74 E-value=7.6 Score=30.74 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=16.9
Q ss_pred HHHccCC-cEEEEeecCCCcccccc
Q psy11948 35 SALLARK-DIVGAAETGSGKTLAFG 58 (167)
Q Consensus 35 ~~l~~~~-d~i~~a~tgsGKt~~~~ 58 (167)
.++.|.+ .+++-+.||||||....
T Consensus 84 ~~l~G~n~tifAYGqTGSGKTyTm~ 108 (350)
T 2vvg_A 84 AVLEGFNSTIFAYGQTGAGKTWTMG 108 (350)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHhCCCceeEEeecCCCCCCCEEee
Confidence 3456622 36678889999998863
No 234
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=51.59 E-value=7 Score=30.99 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=16.5
Q ss_pred HHccCC-cEEEEeecCCCcccccc
Q psy11948 36 ALLARK-DIVGAAETGSGKTLAFG 58 (167)
Q Consensus 36 ~l~~~~-d~i~~a~tgsGKt~~~~ 58 (167)
++.|.+ .++.-+.||||||.+..
T Consensus 76 ~l~G~n~tifAYGqTGSGKTyTm~ 99 (355)
T 1goj_A 76 ILNGYNGTVFAYGQTGAGKSYTMM 99 (355)
T ss_dssp HTTTCCEEEEEECSTTSSHHHHHT
T ss_pred HhCCCcceEEEECCCCCCcceEee
Confidence 455622 36678899999998863
No 235
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=51.53 E-value=7.6 Score=30.91 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=17.0
Q ss_pred HHHccCC-cEEEEeecCCCcccccc
Q psy11948 35 SALLARK-DIVGAAETGSGKTLAFG 58 (167)
Q Consensus 35 ~~l~~~~-d~i~~a~tgsGKt~~~~ 58 (167)
.++.|.+ .++.-+.||||||.+..
T Consensus 79 ~~l~G~n~tifAYGqTGSGKTyTm~ 103 (365)
T 2y65_A 79 DVLAGYNGTIFAYGQTSSGKTHTME 103 (365)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHhCCCceEEEeecCCCCCCceEEe
Confidence 3456622 36678889999999863
No 236
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=51.53 E-value=4.9 Score=29.52 Aligned_cols=51 Identities=16% Similarity=0.220 Sum_probs=27.8
Q ss_pred CccccCCCCHHHHHHHHHCC--CCCCchHHHhHHHHHHccCCcEEEEeecCCCcccc
Q psy11948 2 AEWVKFNIPETIIRALYQKG--FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~g--~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
.+|+++.-.+.+++.|.+.- +..|...+...+ .-.+.+++.+++|+|||..
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGG----KIPKGVLMVGPPGTGKTLL 61 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC---------CCCCEEEEECCTTSCHHHH
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCC----CCCCeEEEECcCCCCHHHH
Confidence 36777776666666655320 111111111111 1125799999999999964
No 237
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=51.52 E-value=11 Score=37.85 Aligned_cols=47 Identities=17% Similarity=0.228 Sum_probs=30.5
Q ss_pred HHHHHHHHHCCCCCCchHH-HhHHHH--HHccCCcEEEEeecCCCcccccc
Q psy11948 11 ETIIRALYQKGFKTPTKIQ-SMVMPS--ALLARKDIVGAAETGSGKTLAFG 58 (167)
Q Consensus 11 ~~l~~~l~~~g~~~pt~iQ-~~~ip~--~l~~~~d~i~~a~tgsGKt~~~~ 58 (167)
+.+.+.+.+.|+. +++.+ .+++.. .+.-++.+++.++||+|||.++-
T Consensus 892 ~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 892 QCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 4556667777874 55543 333321 22334889999999999998764
No 238
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=51.51 E-value=4.6 Score=27.31 Aligned_cols=15 Identities=13% Similarity=-0.106 Sum_probs=12.6
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
-+++.++.|+|||..
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999974
No 239
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=51.37 E-value=6.2 Score=31.85 Aligned_cols=26 Identities=35% Similarity=0.451 Sum_probs=18.8
Q ss_pred HHHHHHccCCc--EEEEeecCCCcccccc
Q psy11948 32 VMPSALLARKD--IVGAAETGSGKTLAFG 58 (167)
Q Consensus 32 ~ip~~l~~~~d--~i~~a~tgsGKt~~~~ 58 (167)
.+..++.| .+ |++-+.||||||.+..
T Consensus 132 lv~~~l~G-~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDG-YNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTT-CCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCC-cceEEEEECCCCCCCceEeC
Confidence 34555677 54 5677889999999874
No 240
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=51.32 E-value=6.7 Score=31.80 Aligned_cols=26 Identities=38% Similarity=0.511 Sum_probs=18.8
Q ss_pred HHHHHHccCCc--EEEEeecCCCcccccc
Q psy11948 32 VMPSALLARKD--IVGAAETGSGKTLAFG 58 (167)
Q Consensus 32 ~ip~~l~~~~d--~i~~a~tgsGKt~~~~ 58 (167)
.+..++.| .+ |++-+.||||||.+..
T Consensus 130 lv~~~l~G-~n~tifAYGqTGSGKTyTM~ 157 (412)
T 3u06_A 130 LIQSALDG-YNICIFAYGQTGSGKTYTMD 157 (412)
T ss_dssp HHHHHHTT-CCEEEEEESSTTSSHHHHHT
T ss_pred HHHHHHCC-CceEEEEecCCCCCCeeEec
Confidence 34556677 54 5677889999999864
No 241
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=51.31 E-value=28 Score=25.78 Aligned_cols=17 Identities=41% Similarity=0.448 Sum_probs=14.8
Q ss_pred CCcEEEEeecCCCcccc
Q psy11948 40 RKDIVGAAETGSGKTLA 56 (167)
Q Consensus 40 ~~d~i~~a~tgsGKt~~ 56 (167)
...+++.+++|+|||..
T Consensus 50 ~~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEI 66 (310)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 37899999999999964
No 242
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=50.94 E-value=18 Score=32.74 Aligned_cols=55 Identities=16% Similarity=0.245 Sum_probs=35.9
Q ss_pred ccccCC-CCHHHHHHHHHCCCCCCch----HHHhHHHHHHccC--CcEEEEeecCCCccccc
Q psy11948 3 EWVKFN-IPETIIRALYQKGFKTPTK----IQSMVMPSALLAR--KDIVGAAETGSGKTLAF 57 (167)
Q Consensus 3 ~f~~l~-l~~~l~~~l~~~g~~~pt~----iQ~~~ip~~l~~~--~d~i~~a~tgsGKt~~~ 57 (167)
-|..++ .++.+++...........| +-..|+..++..+ ..||+++.+|+|||.+-
T Consensus 128 Pyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 189 (1010)
T 1g8x_A 128 PFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENT 189 (1010)
T ss_dssp CSSCCSCCSHHHHHHHTTCCTTTSCCCHHHHHHHHHHHHHHHTCCEEEEEEESTTSSHHHHH
T ss_pred CCccccCCCHHHHHHhcCCCccCCCccHHHHHHHHHHHHHhcCCCeEEEEeCCCCCCcchHH
Confidence 456666 3677777776554444333 4555665555432 46999999999999873
No 243
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=50.93 E-value=4.7 Score=30.26 Aligned_cols=17 Identities=35% Similarity=0.458 Sum_probs=14.9
Q ss_pred CCcEEEEeecCCCcccc
Q psy11948 40 RKDIVGAAETGSGKTLA 56 (167)
Q Consensus 40 ~~d~i~~a~tgsGKt~~ 56 (167)
.+.+++.+++|+|||..
T Consensus 54 ~~~vll~Gp~GtGKT~l 70 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLL 70 (297)
T ss_dssp CSEEEEESSSSSCHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 37899999999999974
No 244
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=50.68 E-value=5.3 Score=28.23 Aligned_cols=16 Identities=31% Similarity=0.272 Sum_probs=14.5
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
..+++.+++|+|||..
T Consensus 26 ~~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTL 41 (199)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CEEEEEcCCCCCHHHH
Confidence 7899999999999975
No 245
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=50.67 E-value=5.4 Score=27.86 Aligned_cols=16 Identities=31% Similarity=0.509 Sum_probs=13.2
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
+-+.+.+++|+|||..
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4467899999999974
No 246
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=50.48 E-value=7.6 Score=30.77 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=16.8
Q ss_pred HHHccCC-cEEEEeecCCCcccccc
Q psy11948 35 SALLARK-DIVGAAETGSGKTLAFG 58 (167)
Q Consensus 35 ~~l~~~~-d~i~~a~tgsGKt~~~~ 58 (167)
.++.|.+ .+++-+.||||||.+..
T Consensus 100 ~~l~G~n~tifAYGqTGSGKTyTm~ 124 (355)
T 3lre_A 100 SFLNGYNCTVLAYGATGAGKTHTML 124 (355)
T ss_dssp HHTTTCCEEEEEECCTTSSHHHHHT
T ss_pred HHhCCCceEEEEeCCCCCCceeeec
Confidence 3455622 36678889999999864
No 247
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=50.25 E-value=8 Score=30.47 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=16.3
Q ss_pred HHHccCCc--EEEEeecCCCccccc
Q psy11948 35 SALLARKD--IVGAAETGSGKTLAF 57 (167)
Q Consensus 35 ~~l~~~~d--~i~~a~tgsGKt~~~ 57 (167)
.++.| .+ ++.-+.||||||.+.
T Consensus 78 ~~l~G-~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 78 AFFEG-FNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHTT-CCEEEEEESSTTSSHHHHH
T ss_pred HHHhh-cCeeEEEecccCCCceEee
Confidence 34566 44 567788999999876
No 248
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.25 E-value=3.5 Score=33.74 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=29.6
Q ss_pred ccccCCCCHHHHHHHHHC---CCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccc
Q psy11948 3 EWVKFNIPETIIRALYQK---GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~---g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
+|++.+=-+..++.|.+. -+.+|--.+...++ -.+.+++.+|.|+|||+.
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~----~prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIK----PPKGVILYGAPGTGKTLL 232 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC----CCSEEEEESSTTTTHHHH
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC----CCCCCceECCCCchHHHH
Confidence 688877334444444432 12344333333332 237899999999999974
No 249
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=50.21 E-value=4.3 Score=32.87 Aligned_cols=28 Identities=21% Similarity=0.185 Sum_probs=18.1
Q ss_pred HHhHHHHHHcc-CCcEEEEeecCCCcccc
Q psy11948 29 QSMVMPSALLA-RKDIVGAAETGSGKTLA 56 (167)
Q Consensus 29 Q~~~ip~~l~~-~~d~i~~a~tgsGKt~~ 56 (167)
+...+..++.. +.-+++.++||||||..
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 34444443432 23578999999999974
No 250
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=50.09 E-value=5.9 Score=28.10 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=14.1
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+++++++|+|||..
T Consensus 13 ~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTL 28 (204)
T ss_dssp CCEEEECCTTSCHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 6789999999999873
No 251
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=49.93 E-value=6 Score=26.91 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=14.0
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+++.++.|||||..
T Consensus 5 ~~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTI 20 (173)
T ss_dssp CCEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5688999999999874
No 252
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=49.51 E-value=7.8 Score=31.41 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=16.8
Q ss_pred HHHccCC-cEEEEeecCCCcccccc
Q psy11948 35 SALLARK-DIVGAAETGSGKTLAFG 58 (167)
Q Consensus 35 ~~l~~~~-d~i~~a~tgsGKt~~~~ 58 (167)
.++.|.+ .|++-+.||||||.+..
T Consensus 149 ~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 149 TIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHhcCCceeEEeecCCCCCCCeEee
Confidence 3455622 46678889999998863
No 253
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=48.86 E-value=5.9 Score=30.44 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=14.9
Q ss_pred CCcEEEEeecCCCcccc
Q psy11948 40 RKDIVGAAETGSGKTLA 56 (167)
Q Consensus 40 ~~d~i~~a~tgsGKt~~ 56 (167)
...+++.+++|+|||..
T Consensus 152 ~~~lll~G~~GtGKT~L 168 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYL 168 (308)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 37899999999999963
No 254
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=48.85 E-value=7.1 Score=31.42 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=16.4
Q ss_pred HHccCCc--EEEEeecCCCcccccc
Q psy11948 36 ALLARKD--IVGAAETGSGKTLAFG 58 (167)
Q Consensus 36 ~l~~~~d--~i~~a~tgsGKt~~~~ 58 (167)
++.| .+ ++.-+.||||||.+..
T Consensus 94 ~l~G-~N~tifAYGqTGSGKTyTM~ 117 (388)
T 3bfn_A 94 LLEG-QNASVLAYGPTGAGKTHTML 117 (388)
T ss_dssp HTTT-CCEEEEEESCTTSSHHHHHT
T ss_pred hhcC-ceeeEeeecCCCCCCCeEee
Confidence 4556 44 6678889999998864
No 255
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=48.49 E-value=8.6 Score=31.45 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=16.6
Q ss_pred HHccCCc--EEEEeecCCCcccccc
Q psy11948 36 ALLARKD--IVGAAETGSGKTLAFG 58 (167)
Q Consensus 36 ~l~~~~d--~i~~a~tgsGKt~~~~ 58 (167)
++.| .+ |++-+.||||||.+..
T Consensus 132 ~l~G-yN~tIfAYGQTGSGKTyTM~ 155 (443)
T 2owm_A 132 NFEG-YHTCIFAYGQTGSGKSYTMM 155 (443)
T ss_dssp HHTT-CCEEEEEESSTTSSHHHHHT
T ss_pred hhcC-CceEEEEeCCCCCCCCEEee
Confidence 4566 44 6677889999999874
No 256
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=48.47 E-value=6.2 Score=30.52 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=14.1
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
+.+++.+++|+|||..
T Consensus 71 ~~vLl~GppGtGKT~l 86 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAI 86 (368)
T ss_dssp CEEEEEESTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4799999999999973
No 257
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=48.46 E-value=5.7 Score=30.40 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=16.9
Q ss_pred HHHccCCcEEEEeecCCCcccc
Q psy11948 35 SALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 35 ~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
.+..+ ..+++.+++|+|||..
T Consensus 42 ~l~~~-~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 42 GICTG-GHILLEGVPGLAKTLS 62 (331)
T ss_dssp HHHHT-CCEEEESCCCHHHHHH
T ss_pred HHHcC-CeEEEECCCCCcHHHH
Confidence 34445 8999999999999963
No 258
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=48.27 E-value=8.5 Score=29.42 Aligned_cols=17 Identities=24% Similarity=0.501 Sum_probs=15.0
Q ss_pred CCcEEEEeecCCCcccc
Q psy11948 40 RKDIVGAAETGSGKTLA 56 (167)
Q Consensus 40 ~~d~i~~a~tgsGKt~~ 56 (167)
...+++.+++|+|||..
T Consensus 25 ~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELV 41 (304)
T ss_dssp TSCEEEESCTTSCHHHH
T ss_pred CCcEEEECCCCchHHHH
Confidence 47899999999999973
No 259
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=48.10 E-value=6.9 Score=30.92 Aligned_cols=26 Identities=35% Similarity=0.425 Sum_probs=18.4
Q ss_pred HHHHHHccCCc--EEEEeecCCCcccccc
Q psy11948 32 VMPSALLARKD--IVGAAETGSGKTLAFG 58 (167)
Q Consensus 32 ~ip~~l~~~~d--~i~~a~tgsGKt~~~~ 58 (167)
.+..++.| .+ +++-+.||||||.+..
T Consensus 77 lv~~~l~G-~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 77 LVQSSLDG-YNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHGGGTT-CEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHCC-cceeEEEeCCCCCCCceEeC
Confidence 34445666 54 5677889999999873
No 260
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=47.84 E-value=6.7 Score=27.00 Aligned_cols=16 Identities=31% Similarity=0.407 Sum_probs=14.3
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
..+++.+..|+|||..
T Consensus 12 ~~i~i~G~~GsGKst~ 27 (180)
T 3iij_A 12 PNILLTGTPGVGKTTL 27 (180)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEEeCCCCCHHHH
Confidence 6799999999999974
No 261
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=47.77 E-value=6.1 Score=27.67 Aligned_cols=16 Identities=31% Similarity=0.264 Sum_probs=13.8
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+++.+++|||||..
T Consensus 7 ~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTV 22 (207)
T ss_dssp CEEEEECSTTSCHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 6788999999999874
No 262
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=47.67 E-value=6.1 Score=30.00 Aligned_cols=16 Identities=19% Similarity=0.111 Sum_probs=13.8
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
+-+++.+++|+|||..
T Consensus 37 ~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ 52 (293)
T ss_dssp SEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 5688999999999973
No 263
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=47.22 E-value=18 Score=32.90 Aligned_cols=55 Identities=20% Similarity=0.300 Sum_probs=36.9
Q ss_pred ccccCC-C-CHHHHHHHHHCCCCCCch----HHHhHHHHHHccC--CcEEEEeecCCCccccc
Q psy11948 3 EWVKFN-I-PETIIRALYQKGFKTPTK----IQSMVMPSALLAR--KDIVGAAETGSGKTLAF 57 (167)
Q Consensus 3 ~f~~l~-l-~~~l~~~l~~~g~~~pt~----iQ~~~ip~~l~~~--~d~i~~a~tgsGKt~~~ 57 (167)
-|..++ | +++.++..+......+.| +-..|.-.++..+ +.||+++.+|+|||.+-
T Consensus 99 Pyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTest 161 (1052)
T 4anj_A 99 PYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENT 161 (1052)
T ss_dssp CSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred CCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHH
Confidence 356674 3 788888777655544333 4555665555432 46999999999999874
No 264
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=46.96 E-value=6.6 Score=28.37 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=15.0
Q ss_pred ccCCcEEEEeecCCCcccc
Q psy11948 38 LARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 38 ~~~~d~i~~a~tgsGKt~~ 56 (167)
.| +-+++++++|+|||..
T Consensus 18 ~g-~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 18 GR-KTLVLIGASGVGRSHI 35 (197)
T ss_dssp SC-CEEEEECCTTSSHHHH
T ss_pred CC-CEEEEECcCCCCHHHH
Confidence 44 7788999999999973
No 265
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=46.86 E-value=9.2 Score=30.75 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=16.8
Q ss_pred HHHccCC--cEEEEeecCCCcccccc
Q psy11948 35 SALLARK--DIVGAAETGSGKTLAFG 58 (167)
Q Consensus 35 ~~l~~~~--d~i~~a~tgsGKt~~~~ 58 (167)
.++.| . .|++-+.||||||.+..
T Consensus 129 ~~l~G-~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 129 TIFEG-GKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHTT-CEEEEEEESCTTSSHHHHHC
T ss_pred HHhcC-CceEEEEecCCCCCCCeEec
Confidence 34566 4 46678889999998863
No 266
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=46.83 E-value=6.5 Score=29.86 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=13.5
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-++++++.|+|||..
T Consensus 34 ~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSL 49 (287)
T ss_dssp EEEEEECCTTSCTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4588999999999874
No 267
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=46.72 E-value=6.3 Score=30.86 Aligned_cols=15 Identities=33% Similarity=0.222 Sum_probs=13.1
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
-++++++||+|||..
T Consensus 7 ~i~i~GptGsGKTtl 21 (323)
T 3crm_A 7 AIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999974
No 268
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=46.68 E-value=5.9 Score=31.41 Aligned_cols=17 Identities=35% Similarity=0.411 Sum_probs=14.6
Q ss_pred CcEEEEeecCCCccccc
Q psy11948 41 KDIVGAAETGSGKTLAF 57 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~ 57 (167)
.-+++.++||||||...
T Consensus 137 ~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTI 153 (372)
T ss_dssp EEEEEECSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 57889999999999754
No 269
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=46.61 E-value=6.7 Score=26.99 Aligned_cols=16 Identities=31% Similarity=0.364 Sum_probs=13.8
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+++.++.|||||..
T Consensus 4 ~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTS 19 (192)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 5688999999999964
No 270
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=46.46 E-value=6.7 Score=27.11 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=13.6
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+++.+..|+|||..
T Consensus 6 ~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTL 21 (193)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4578999999999974
No 271
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=46.33 E-value=8.3 Score=30.83 Aligned_cols=24 Identities=42% Similarity=0.469 Sum_probs=17.3
Q ss_pred HHHHccCCc--EEEEeecCCCcccccc
Q psy11948 34 PSALLARKD--IVGAAETGSGKTLAFG 58 (167)
Q Consensus 34 p~~l~~~~d--~i~~a~tgsGKt~~~~ 58 (167)
..++.| .+ |++-+.||||||.+..
T Consensus 109 ~~~l~G-~N~tifAYGqTGSGKTyTM~ 134 (376)
T 2rep_A 109 QSALDG-YPVCIFAYGQTGSGKTFTME 134 (376)
T ss_dssp HGGGGT-CCEEEEEECSTTSSHHHHHT
T ss_pred HHhcCC-CceEEEEeCCCCCCCceEee
Confidence 344566 44 6677889999998864
No 272
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=46.19 E-value=6.3 Score=27.46 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=13.4
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
.+++.+++|+|||..
T Consensus 40 ~~ll~G~~G~GKT~l 54 (226)
T 2chg_A 40 HLLFSGPPGTGKTAT 54 (226)
T ss_dssp CEEEECSTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 599999999999963
No 273
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=46.14 E-value=6.3 Score=27.38 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=12.6
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
-+++.+++|+|||..
T Consensus 4 ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 4 LYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCcHHHH
Confidence 467899999999974
No 274
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=46.11 E-value=6.2 Score=29.28 Aligned_cols=16 Identities=25% Similarity=0.212 Sum_probs=14.0
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
..+++.+++|+|||..
T Consensus 65 ~~vLl~G~~GtGKT~l 80 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTAL 80 (272)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 4699999999999974
No 275
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=46.02 E-value=6.9 Score=26.91 Aligned_cols=15 Identities=20% Similarity=0.129 Sum_probs=12.4
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
-+++.++.|+|||..
T Consensus 3 ~I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 377899999999863
No 276
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=45.97 E-value=7 Score=29.81 Aligned_cols=16 Identities=31% Similarity=0.324 Sum_probs=14.3
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
..+++.+++|+|||..
T Consensus 38 ~~lll~G~~GtGKT~l 53 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHL 53 (324)
T ss_dssp SSEEEECSSSSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 6899999999999963
No 277
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=45.78 E-value=7.1 Score=27.78 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=13.2
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+.+.+++|||||..
T Consensus 23 ~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTL 38 (208)
T ss_dssp EEEEEECCTTSCTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 5567899999999963
No 278
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=45.73 E-value=17 Score=32.04 Aligned_cols=56 Identities=20% Similarity=0.242 Sum_probs=35.2
Q ss_pred ccccCCC-CHHHHHHHHHCCCCCCch----HHHhHHHHHHccC--CcEEEEeecCCCcccccc
Q psy11948 3 EWVKFNI-PETIIRALYQKGFKTPTK----IQSMVMPSALLAR--KDIVGAAETGSGKTLAFG 58 (167)
Q Consensus 3 ~f~~l~l-~~~l~~~l~~~g~~~pt~----iQ~~~ip~~l~~~--~d~i~~a~tgsGKt~~~~ 58 (167)
-|..+++ ++..++...........| +-..|+..++..+ +.||+++.+|+|||.+--
T Consensus 127 Pyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK 189 (783)
T 4db1_A 127 PYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILITGESGAGKTVNTK 189 (783)
T ss_dssp CSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHH
T ss_pred CCccCCCCCHHHHHHhcCCCcCCCCchhhHHHHHHHHHHHhhCCCceEEEeCCCCCCCchHHH
Confidence 3556663 677777666544333333 5555665555432 469999999999998743
No 279
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=45.54 E-value=6.4 Score=27.71 Aligned_cols=16 Identities=38% Similarity=0.439 Sum_probs=13.8
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-++++++.|+|||..
T Consensus 19 ~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SCEEEECSTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4688999999999974
No 280
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=45.46 E-value=6.7 Score=30.95 Aligned_cols=15 Identities=47% Similarity=0.279 Sum_probs=12.8
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
-++++++||||||..
T Consensus 9 lI~I~GptgSGKTtl 23 (340)
T 3d3q_A 9 LIVIVGPTASGKTEL 23 (340)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred eEEEECCCcCcHHHH
Confidence 477999999999974
No 281
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=45.45 E-value=7.3 Score=28.15 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=9.8
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+.+.+++|+|||..
T Consensus 28 ~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTV 43 (231)
T ss_dssp CEEEEECSCC----CH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5678999999999974
No 282
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=45.10 E-value=4.1 Score=31.83 Aligned_cols=16 Identities=19% Similarity=-0.116 Sum_probs=14.2
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
..+++.+++|+|||..
T Consensus 46 ~~lli~GpPGTGKT~~ 61 (318)
T 3te6_A 46 KLFYITNADDSTKFQL 61 (318)
T ss_dssp CEEEEECCCSHHHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5799999999999974
No 283
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=45.02 E-value=22 Score=28.49 Aligned_cols=17 Identities=18% Similarity=-0.052 Sum_probs=13.9
Q ss_pred CcEEEEeecCCCccccc
Q psy11948 41 KDIVGAAETGSGKTLAF 57 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~ 57 (167)
.-+.+.+++|+|||...
T Consensus 179 ei~~I~G~sGsGKTTLl 195 (400)
T 3lda_A 179 SITELFGEFRTGKSQLC 195 (400)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred cEEEEEcCCCCChHHHH
Confidence 45789999999999744
No 284
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=44.93 E-value=7.2 Score=29.47 Aligned_cols=16 Identities=25% Similarity=0.291 Sum_probs=14.4
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
..+++.+++|+|||..
T Consensus 39 ~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTL 54 (324)
T ss_dssp CCCEEECCTTCCCHHH
T ss_pred CcEEEECCCCCCHHHH
Confidence 6899999999999964
No 285
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=44.66 E-value=7.8 Score=27.97 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=14.2
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+.+.+++|+|||..
T Consensus 24 ~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTL 39 (218)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 7788999999999974
No 286
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=44.38 E-value=7.7 Score=31.46 Aligned_cols=14 Identities=50% Similarity=0.532 Sum_probs=12.1
Q ss_pred EEEEeecCCCcccc
Q psy11948 43 IVGAAETGSGKTLA 56 (167)
Q Consensus 43 ~i~~a~tgsGKt~~ 56 (167)
+++.++||+|||..
T Consensus 5 i~i~GptgsGKttl 18 (409)
T 3eph_A 5 IVIAGTTGVGKSQL 18 (409)
T ss_dssp EEEEECSSSSHHHH
T ss_pred EEEECcchhhHHHH
Confidence 67899999999964
No 287
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=44.30 E-value=11 Score=28.66 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=14.2
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
..+++.+++|+|||..
T Consensus 46 ~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTA 61 (350)
T ss_dssp CCEEEECCGGGCTTHH
T ss_pred ceEEEECCCCccHHHH
Confidence 5799999999999963
No 288
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=44.20 E-value=17 Score=31.56 Aligned_cols=54 Identities=22% Similarity=0.224 Sum_probs=34.1
Q ss_pred ccccCCC-CHHHHHHHHHCCCCCCc----hHHHhHHHHHHccC--CcEEEEeecCCCcccc
Q psy11948 3 EWVKFNI-PETIIRALYQKGFKTPT----KIQSMVMPSALLAR--KDIVGAAETGSGKTLA 56 (167)
Q Consensus 3 ~f~~l~l-~~~l~~~l~~~g~~~pt----~iQ~~~ip~~l~~~--~d~i~~a~tgsGKt~~ 56 (167)
-|..+++ ++..++..+........ .+-..|+..++..+ +.||+++.+|+|||.+
T Consensus 50 Pyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~ 110 (697)
T 1lkx_A 50 PFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEA 110 (697)
T ss_dssp CSSCCSCCSHHHHHHHSSCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHH
T ss_pred CCcCCCCCCHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHhcCCCcEEEecCCCCCCchhh
Confidence 4556663 57777766544333222 35556665555432 4699999999999987
No 289
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=44.14 E-value=26 Score=27.95 Aligned_cols=37 Identities=16% Similarity=0.096 Sum_probs=27.8
Q ss_pred CCchHHHhHHHHHHccCCcEEEEeecCCCcccccccch
Q psy11948 24 TPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 61 (167)
Q Consensus 24 ~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~~~lp~ 61 (167)
.++|.|...+-.+. +.+-+++..+-+.|||.....-.
T Consensus 163 ~L~p~Qk~il~~l~-~~R~~vi~~sRq~GKT~l~a~~~ 199 (385)
T 2o0j_A 163 QLRDYQRDMLKIMS-SKRMTVCNLSRQLGKTTVVAIFL 199 (385)
T ss_dssp CCCHHHHHHHHHHH-HSSEEEEEECSSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHhhc-cCcEEEEEEcCcCChhHHHHHHH
Confidence 78999998886554 33678888899999998655433
No 290
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=44.06 E-value=12 Score=26.21 Aligned_cols=15 Identities=27% Similarity=0.266 Sum_probs=13.2
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
.+++.++.|+|||..
T Consensus 47 ~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 47 AYLFSGTRGVGKTSI 61 (250)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 589999999999963
No 291
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=44.00 E-value=7.7 Score=28.28 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=14.5
Q ss_pred CcEEEEeecCCCccccc
Q psy11948 41 KDIVGAAETGSGKTLAF 57 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~ 57 (167)
.-+++.+++|+|||..+
T Consensus 17 ~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 67889999999999743
No 292
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=43.94 E-value=19 Score=31.77 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=35.1
Q ss_pred ccccCC-CCHHHHHHHHHCCCCCCc----hHHHhHHHHHHccC--CcEEEEeecCCCccccc
Q psy11948 3 EWVKFN-IPETIIRALYQKGFKTPT----KIQSMVMPSALLAR--KDIVGAAETGSGKTLAF 57 (167)
Q Consensus 3 ~f~~l~-l~~~l~~~l~~~g~~~pt----~iQ~~~ip~~l~~~--~d~i~~a~tgsGKt~~~ 57 (167)
-|..++ ..+++++..+.......- .+-..|+..++..+ +.||+++.+|+|||.+-
T Consensus 112 Pyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 173 (795)
T 1w7j_A 112 PYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSA 173 (795)
T ss_dssp CSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred CccccCcCCHHHHHHHcCCCccCCCccHhHHHHHHHHHhHhcCCCeEEEEeCCCCCCcchHH
Confidence 456666 367777766654433333 35556665565432 46999999999999873
No 293
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=43.79 E-value=7.6 Score=27.27 Aligned_cols=16 Identities=38% Similarity=0.488 Sum_probs=13.0
Q ss_pred cEEEEeecCCCccccc
Q psy11948 42 DIVGAAETGSGKTLAF 57 (167)
Q Consensus 42 d~i~~a~tgsGKt~~~ 57 (167)
.+.+.+++|+|||..+
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678899999999853
No 294
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=43.76 E-value=7.7 Score=29.64 Aligned_cols=16 Identities=31% Similarity=0.366 Sum_probs=14.2
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
..+++.+++|+|||..
T Consensus 56 ~~vll~G~~GtGKT~l 71 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTL 71 (338)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECcCCCCHHHH
Confidence 4799999999999974
No 295
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=43.38 E-value=7.9 Score=27.34 Aligned_cols=16 Identities=44% Similarity=0.150 Sum_probs=12.9
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+.+.+++|||||..
T Consensus 7 ~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 7 FVIGIAGGTASGKTTL 22 (211)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 3466899999999974
No 296
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=43.23 E-value=20 Score=31.53 Aligned_cols=55 Identities=16% Similarity=0.245 Sum_probs=34.5
Q ss_pred ccccCC-CCHHHHHHHHHCCCCCCch----HHHhHHHHHHccC--CcEEEEeecCCCccccc
Q psy11948 3 EWVKFN-IPETIIRALYQKGFKTPTK----IQSMVMPSALLAR--KDIVGAAETGSGKTLAF 57 (167)
Q Consensus 3 ~f~~l~-l~~~l~~~l~~~g~~~pt~----iQ~~~ip~~l~~~--~d~i~~a~tgsGKt~~~ 57 (167)
-|..++ .++.+++..+........| +-..|+..++..+ +.||+++.+|+|||.+-
T Consensus 128 Pyk~l~iY~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 128 PFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp CSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHH
T ss_pred CCccccCCCHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHhhcCCcEEEEecCCCCcchHHH
Confidence 355566 3677777666544333323 4455665555432 46999999999999873
No 297
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=43.22 E-value=4.2 Score=35.88 Aligned_cols=20 Identities=50% Similarity=0.697 Sum_probs=18.0
Q ss_pred eeeecccCccceeeecchhh
Q psy11948 86 VGAAETGSGKTLAFGIPILT 105 (167)
Q Consensus 86 ~~~a~tgsgkt~~~~~p~i~ 105 (167)
+....||+|||+++.+|++-
T Consensus 92 iaEM~TGEGKTLva~lp~~l 111 (822)
T 3jux_A 92 VAEMKTGEGKTLAATMPIYL 111 (822)
T ss_dssp EEECCTTSCHHHHTHHHHHH
T ss_pred hhhccCCCCccHHHHHHHHH
Confidence 67889999999999999973
No 298
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=43.13 E-value=13 Score=25.61 Aligned_cols=16 Identities=31% Similarity=0.287 Sum_probs=14.1
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+++.++.|||||..
T Consensus 10 ~~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQ 25 (196)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 6789999999999974
No 299
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=43.01 E-value=8.2 Score=26.84 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=14.2
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
..+++.+..|||||..
T Consensus 11 ~~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 11 INILITGTPGTGKTSM 26 (184)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 6799999999999974
No 300
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=42.93 E-value=8.6 Score=30.06 Aligned_cols=16 Identities=50% Similarity=0.621 Sum_probs=14.4
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
..+++.+++|+|||..
T Consensus 73 ~~ill~Gp~GtGKT~l 88 (376)
T 1um8_A 73 SNILLIGPTGSGKTLM 88 (376)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CCEEEECCCCCCHHHH
Confidence 6899999999999974
No 301
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=42.90 E-value=28 Score=30.60 Aligned_cols=54 Identities=19% Similarity=0.288 Sum_probs=34.9
Q ss_pred ccccC-C-CCHHHHHHHHHCCCCCC----chHHHhHHHHHHccC--CcEEEEeecCCCcccc
Q psy11948 3 EWVKF-N-IPETIIRALYQKGFKTP----TKIQSMVMPSALLAR--KDIVGAAETGSGKTLA 56 (167)
Q Consensus 3 ~f~~l-~-l~~~l~~~l~~~g~~~p----t~iQ~~~ip~~l~~~--~d~i~~a~tgsGKt~~ 56 (167)
-|..+ + ..+..++.......... ..+-..|+..++..+ +.||+++.+|+|||.+
T Consensus 95 Pyk~l~~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~ 156 (784)
T 2v26_A 95 PYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTEN 156 (784)
T ss_dssp CSSCCTTTTSHHHHHHHTTCCTTSSCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred CCcCcCCCCCHHHHHHHhCCCcccCCchHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCceeh
Confidence 45666 3 36777776665444333 335556665555432 4699999999999976
No 302
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=42.80 E-value=8.4 Score=30.12 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=14.2
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
+.+++.+++|+|||+.
T Consensus 85 ~~iLL~GppGtGKT~l 100 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYL 100 (355)
T ss_dssp CCEEEECSTTSCHHHH
T ss_pred ceEEEECCCCCcHHHH
Confidence 5799999999999974
No 303
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=42.79 E-value=7.7 Score=26.69 Aligned_cols=16 Identities=19% Similarity=0.335 Sum_probs=13.8
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+++.++.|||||..
T Consensus 5 ~~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQ 20 (186)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 5688999999999964
No 304
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=42.75 E-value=7.6 Score=33.01 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=12.4
Q ss_pred eeeeecccCccceee
Q psy11948 85 IVGAAETGSGKTLAF 99 (167)
Q Consensus 85 ~~~~a~tgsgkt~~~ 99 (167)
.++..|-|+|||-+.
T Consensus 208 ~lI~GPPGTGKT~ti 222 (646)
T 4b3f_X 208 AIIHGPPGTGKTTTV 222 (646)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred eEEECCCCCCHHHHH
Confidence 478999999999653
No 305
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=42.44 E-value=21 Score=32.31 Aligned_cols=55 Identities=22% Similarity=0.262 Sum_probs=35.0
Q ss_pred ccccCC-CCHHHHHHHHHCCCCCCch----HHHhHHHHHHccC--CcEEEEeecCCCccccc
Q psy11948 3 EWVKFN-IPETIIRALYQKGFKTPTK----IQSMVMPSALLAR--KDIVGAAETGSGKTLAF 57 (167)
Q Consensus 3 ~f~~l~-l~~~l~~~l~~~g~~~pt~----iQ~~~ip~~l~~~--~d~i~~a~tgsGKt~~~ 57 (167)
-|..++ .++.++............| +-..|+..++..+ ..||+++.+|+|||.+-
T Consensus 102 Pyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 163 (995)
T 2ycu_A 102 PYKQLPIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSILCTGESGAGKTENT 163 (995)
T ss_dssp CSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECBTTSSHHHHH
T ss_pred CccccCCCCHHHHHHhcCCccCCCCchHHHHhHHHHHHHHhcCCCcEEEecCCCCCCchhhH
Confidence 456666 3677777666544333323 5555665555432 46999999999999873
No 306
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=42.40 E-value=7.8 Score=26.47 Aligned_cols=16 Identities=31% Similarity=0.283 Sum_probs=13.6
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+++.++.|+|||..
T Consensus 9 ~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAV 24 (175)
T ss_dssp EEEEEECSTTSCHHHH
T ss_pred cEEEEEcCCCCCHHHH
Confidence 4678999999999874
No 307
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=42.36 E-value=8.5 Score=27.13 Aligned_cols=16 Identities=38% Similarity=0.515 Sum_probs=14.0
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+++.++.|+|||..
T Consensus 30 ~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTI 45 (200)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 6788999999999974
No 308
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=42.36 E-value=8 Score=26.63 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=13.4
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+++.+..|||||..
T Consensus 4 ~~I~l~G~~GsGKsT~ 19 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQ 19 (196)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4578999999999874
No 309
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=42.19 E-value=7.8 Score=29.83 Aligned_cols=16 Identities=31% Similarity=0.339 Sum_probs=14.3
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
..+++.+++|+|||..
T Consensus 45 ~~vll~G~~G~GKT~l 60 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAV 60 (387)
T ss_dssp CCEEECBCTTSSHHHH
T ss_pred CcEEEECCCCCCHHHH
Confidence 6799999999999974
No 310
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=41.87 E-value=8.5 Score=27.33 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=15.4
Q ss_pred HHccCCcEEEEeecCCCccccc
Q psy11948 36 ALLARKDIVGAAETGSGKTLAF 57 (167)
Q Consensus 36 ~l~~~~d~i~~a~tgsGKt~~~ 57 (167)
+-.| .-+.+.+++|+|||..+
T Consensus 17 i~~G-ei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 17 AAVG-RVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp --CC-CEEEEECSTTSSHHHHH
T ss_pred CCCC-CEEEEECCCCCCHHHHH
Confidence 3445 67889999999999743
No 311
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=41.84 E-value=12 Score=37.56 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=19.8
Q ss_pred HHHHHHccCCcEEEEeecCCCcccc
Q psy11948 32 VMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 32 ~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
.+..++.+++.+++++++|+|||+.
T Consensus 1259 ll~~~l~~~~~vLL~GPpGtGKT~l 1283 (2695)
T 4akg_A 1259 IFYDLLNSKRGIILCGPPGSGKTMI 1283 (2695)
T ss_dssp HHHHHHHHTCEEEEECSTTSSHHHH
T ss_pred HHHHHHHCCCeEEEECCCCCCHHHH
Confidence 3445556669999999999999974
No 312
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=41.74 E-value=9.7 Score=27.86 Aligned_cols=15 Identities=20% Similarity=0.397 Sum_probs=13.1
Q ss_pred CcEEEEeecCCCccc
Q psy11948 41 KDIVGAAETGSGKTL 55 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~ 55 (167)
+-+++.++||+|||.
T Consensus 35 ~~ilI~GpsGsGKSt 49 (205)
T 2qmh_A 35 LGVLITGDSGVGKSE 49 (205)
T ss_dssp EEEEEECCCTTTTHH
T ss_pred EEEEEECCCCCCHHH
Confidence 668999999999974
No 313
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=41.67 E-value=19 Score=31.88 Aligned_cols=55 Identities=16% Similarity=0.236 Sum_probs=34.7
Q ss_pred ccccCCC-CHHHHHHHHHCCCCCCc----hHHHhHHHHHHccC--CcEEEEeecCCCccccc
Q psy11948 3 EWVKFNI-PETIIRALYQKGFKTPT----KIQSMVMPSALLAR--KDIVGAAETGSGKTLAF 57 (167)
Q Consensus 3 ~f~~l~l-~~~l~~~l~~~g~~~pt----~iQ~~~ip~~l~~~--~d~i~~a~tgsGKt~~~ 57 (167)
-|..+++ ++.+++.-......... .+-..|...++..+ +.||+++.+|+|||.+-
T Consensus 125 Pyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 186 (837)
T 1kk8_A 125 PYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENT 186 (837)
T ss_dssp CSSCCSTTSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHH
T ss_pred CCcCCCCCCHHHHHHhcCCCcCCCCCcHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCchhhH
Confidence 4556663 67777766654433322 34555665555432 46999999999999873
No 314
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=41.66 E-value=8.5 Score=31.19 Aligned_cols=16 Identities=31% Similarity=0.488 Sum_probs=14.3
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
+.+++.+++|+|||..
T Consensus 64 ~~iLl~GppGtGKT~l 79 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTAL 79 (456)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CeEEEECCCcCCHHHH
Confidence 5799999999999964
No 315
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.61 E-value=8.3 Score=31.38 Aligned_cols=50 Identities=8% Similarity=0.126 Sum_probs=27.8
Q ss_pred ccccCCCCHHHHHHHHHC---CCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccc
Q psy11948 3 EWVKFNIPETIIRALYQK---GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~---g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
+|++.+=-+...+.|.+. -+.+|--.+...+ .-.+.+++.+|.|+|||+.
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~----~~prGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGI----DPPRGVLLYGPPGTGKTML 222 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC----CCCCEEEEESCTTTTHHHH
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC----CCCceEEEECCCCCCHHHH
Confidence 577776444555555431 1122222222211 1236799999999999974
No 316
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=41.37 E-value=11 Score=26.04 Aligned_cols=16 Identities=38% Similarity=0.293 Sum_probs=14.1
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+++.++.|||||..
T Consensus 13 ~~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQ 28 (199)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 6788999999999964
No 317
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=41.34 E-value=21 Score=32.87 Aligned_cols=55 Identities=25% Similarity=0.280 Sum_probs=35.8
Q ss_pred ccccCC-CCHHHHHHHHHCCCCCCch----HHHhHHHHHHccC--CcEEEEeecCCCccccc
Q psy11948 3 EWVKFN-IPETIIRALYQKGFKTPTK----IQSMVMPSALLAR--KDIVGAAETGSGKTLAF 57 (167)
Q Consensus 3 ~f~~l~-l~~~l~~~l~~~g~~~pt~----iQ~~~ip~~l~~~--~d~i~~a~tgsGKt~~~ 57 (167)
-|..++ .++.++............| +=..|+-.++..+ ..||+++.+|+|||.+-
T Consensus 125 P~~~l~~y~~~~~~~y~~~~~~~~~PHi~aia~~ay~~m~~~~~~Q~i~isGeSGaGKTe~~ 186 (1184)
T 1i84_S 125 PYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENT 186 (1184)
T ss_dssp CCSCCSCCSHHHHHHHSSCCSSSSCCCHHHHHHHHHHHHHHHTCCEEEECCCSTTSSTTHHH
T ss_pred CCcCCCCCCHHHHHHhcCcccccCCccHhhhHHHHHHHHHhcCCCcEEEEecCCCCCccHHH
Confidence 466666 4677777666544443333 5556665555432 45899999999999873
No 318
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=41.21 E-value=5.8 Score=27.42 Aligned_cols=32 Identities=19% Similarity=0.104 Sum_probs=16.0
Q ss_pred CCchHHHhHHHHHHccCCcEEEEeecCCCccc
Q psy11948 24 TPTKIQSMVMPSALLARKDIVGAAETGSGKTL 55 (167)
Q Consensus 24 ~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~ 55 (167)
.+++.|+...|........+++.+..|+|||.
T Consensus 6 ~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSs 37 (188)
T 1zd9_A 6 HHHHHSSGLVPRGSKEEMELTLVGLQYSGKTT 37 (188)
T ss_dssp -------------CCEEEEEEEECSTTSSHHH
T ss_pred ccccccccccccCCCCccEEEEECCCCCCHHH
Confidence 56667777777666554689999999999996
No 319
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=41.06 E-value=9.2 Score=27.51 Aligned_cols=16 Identities=31% Similarity=0.250 Sum_probs=14.0
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+++.++.|||||..
T Consensus 8 ~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTV 23 (227)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 5689999999999974
No 320
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=40.93 E-value=21 Score=32.57 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=34.7
Q ss_pred ccccCC-CCHHHHHHHHHCCCCCCc----hHHHhHHHHHHccC--CcEEEEeecCCCccccc
Q psy11948 3 EWVKFN-IPETIIRALYQKGFKTPT----KIQSMVMPSALLAR--KDIVGAAETGSGKTLAF 57 (167)
Q Consensus 3 ~f~~l~-l~~~l~~~l~~~g~~~pt----~iQ~~~ip~~l~~~--~d~i~~a~tgsGKt~~~ 57 (167)
-|..++ ..+.++..........+. .+=..|+-.++..+ ..||+++.+|+|||.+-
T Consensus 112 Pyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 173 (1080)
T 2dfs_A 112 PYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSA 173 (1080)
T ss_dssp CSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred CCcccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCccchH
Confidence 456666 367777766554433332 35555665555432 46999999999999873
No 321
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=40.58 E-value=10 Score=26.06 Aligned_cols=15 Identities=27% Similarity=0.178 Sum_probs=12.5
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
-.++.+++|+|||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 456899999999974
No 322
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=40.34 E-value=9.5 Score=26.17 Aligned_cols=15 Identities=27% Similarity=0.260 Sum_probs=12.9
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
-+++.+..|||||..
T Consensus 8 ~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999974
No 323
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=40.30 E-value=8.8 Score=28.02 Aligned_cols=16 Identities=31% Similarity=0.229 Sum_probs=13.9
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+++.+++|+|||..
T Consensus 28 ~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTV 43 (246)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 5788999999999873
No 324
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=39.95 E-value=4.7 Score=29.79 Aligned_cols=16 Identities=38% Similarity=0.567 Sum_probs=14.0
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
+.+++.+++|+|||..
T Consensus 45 ~~vll~G~~GtGKT~l 60 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLL 60 (268)
T ss_dssp SCCCCBCSSCSSHHHH
T ss_pred ceEEEECCCCCcHHHH
Confidence 5689999999999974
No 325
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=39.95 E-value=9 Score=26.60 Aligned_cols=14 Identities=29% Similarity=0.380 Sum_probs=12.0
Q ss_pred cEEEEeecCCCccc
Q psy11948 42 DIVGAAETGSGKTL 55 (167)
Q Consensus 42 d~i~~a~tgsGKt~ 55 (167)
-+++.+..|+|||.
T Consensus 2 ~I~i~G~~GsGKsT 15 (205)
T 2jaq_A 2 KIAIFGTVGAGKST 15 (205)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCccCHHH
Confidence 36789999999996
No 326
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=39.65 E-value=8.2 Score=30.43 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=13.1
Q ss_pred cEEEEeecCCCccccc
Q psy11948 42 DIVGAAETGSGKTLAF 57 (167)
Q Consensus 42 d~i~~a~tgsGKt~~~ 57 (167)
-.++.+++|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4568999999999754
No 327
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=39.27 E-value=10 Score=26.94 Aligned_cols=17 Identities=35% Similarity=0.112 Sum_probs=14.0
Q ss_pred CcEEEEeecCCCccccc
Q psy11948 41 KDIVGAAETGSGKTLAF 57 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~ 57 (167)
.-+.+.+++|+|||...
T Consensus 26 ~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLA 42 (231)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 56789999999999743
No 328
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=39.14 E-value=35 Score=25.97 Aligned_cols=15 Identities=20% Similarity=0.335 Sum_probs=13.2
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
.+++.+++|+|||..
T Consensus 38 ~~ll~Gp~G~GKTtl 52 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTR 52 (354)
T ss_dssp CEEEECSTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 399999999999974
No 329
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=39.12 E-value=10 Score=26.55 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=12.6
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
-+.+.++.|||||..
T Consensus 3 ~i~i~G~~GsGKSTl 17 (204)
T 2if2_A 3 RIGLTGNIGCGKSTV 17 (204)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 367899999999975
No 330
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=39.01 E-value=9.1 Score=28.71 Aligned_cols=16 Identities=31% Similarity=0.256 Sum_probs=13.8
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
..+++.+++|+|||..
T Consensus 48 ~~~ll~G~~GtGKt~l 63 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTEL 63 (311)
T ss_dssp EEEEEESCSSSSHHHH
T ss_pred eEEEEECCCCcCHHHH
Confidence 3689999999999974
No 331
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=38.95 E-value=9.5 Score=27.03 Aligned_cols=15 Identities=33% Similarity=0.384 Sum_probs=12.7
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
.+++.++.|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999874
No 332
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=38.93 E-value=10 Score=27.25 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=14.5
Q ss_pred CcEEEEeecCCCccccc
Q psy11948 41 KDIVGAAETGSGKTLAF 57 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~ 57 (167)
.-+.+.+++|+|||...
T Consensus 31 ~~~~l~GpnGsGKSTLl 47 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEEeCCCCCHHHHH
Confidence 67889999999999744
No 333
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=38.71 E-value=11 Score=26.35 Aligned_cols=16 Identities=38% Similarity=0.156 Sum_probs=14.0
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+++.++.|||||..
T Consensus 5 ~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred cEEEEEcCCCCCHHHH
Confidence 6788999999999973
No 334
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=38.47 E-value=25 Score=25.74 Aligned_cols=15 Identities=20% Similarity=0.219 Sum_probs=13.3
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
.+++.++.|+|||..
T Consensus 60 ~ili~GPPGtGKTt~ 74 (212)
T 1tue_A 60 CLVFCGPANTGKSYF 74 (212)
T ss_dssp EEEEESCGGGCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 599999999999963
No 335
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=38.42 E-value=9.8 Score=26.80 Aligned_cols=16 Identities=31% Similarity=0.206 Sum_probs=13.7
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+.+.+++|+|||..
T Consensus 26 ~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTL 41 (200)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 5677999999999974
No 336
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=37.88 E-value=11 Score=26.97 Aligned_cols=16 Identities=19% Similarity=0.214 Sum_probs=14.0
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+++.++.|||||..
T Consensus 6 ~~I~l~G~~GsGKsT~ 21 (222)
T 1zak_A 6 LKVMISGAPASGKGTQ 21 (222)
T ss_dssp CCEEEEESTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 5789999999999964
No 337
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=37.88 E-value=8.5 Score=30.37 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=17.4
Q ss_pred HHHHccCCc--EEEEeecCCCcccccc
Q psy11948 34 PSALLARKD--IVGAAETGSGKTLAFG 58 (167)
Q Consensus 34 p~~l~~~~d--~i~~a~tgsGKt~~~~ 58 (167)
..++.| .+ +++-+.||||||....
T Consensus 78 ~~~l~G-~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 78 QSSLDG-YNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp GGGGGT-CCEEEEEECCTTSSHHHHHH
T ss_pred HHhcCC-ceeEEEEECCCCCCCcEecc
Confidence 334566 44 6678889999998764
No 338
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=37.50 E-value=10 Score=26.53 Aligned_cols=15 Identities=27% Similarity=0.255 Sum_probs=12.8
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
-+++.++.|||||..
T Consensus 17 ~I~l~G~~GsGKsT~ 31 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQ 31 (203)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477899999999974
No 339
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=37.41 E-value=11 Score=26.42 Aligned_cols=16 Identities=31% Similarity=0.185 Sum_probs=13.6
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+++.+..|||||..
T Consensus 5 ~~I~i~G~~GsGKsT~ 20 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQ 20 (213)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEEcCCCCCHHHH
Confidence 5688999999999974
No 340
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=37.40 E-value=10 Score=29.90 Aligned_cols=16 Identities=25% Similarity=0.463 Sum_probs=14.5
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
+.+++.+++|+|||..
T Consensus 149 ~~vLL~GppGtGKT~l 164 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTML 164 (389)
T ss_dssp SEEEEESSTTSCHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 6899999999999963
No 341
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=37.28 E-value=11 Score=25.43 Aligned_cols=14 Identities=29% Similarity=0.316 Sum_probs=11.8
Q ss_pred EEEEeecCCCcccc
Q psy11948 43 IVGAAETGSGKTLA 56 (167)
Q Consensus 43 ~i~~a~tgsGKt~~ 56 (167)
.++.+++|+|||..
T Consensus 26 ~~I~G~NGsGKSti 39 (149)
T 1f2t_A 26 NLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 46789999999974
No 342
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=37.28 E-value=11 Score=25.79 Aligned_cols=16 Identities=31% Similarity=0.140 Sum_probs=9.7
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+++.+..|||||..
T Consensus 6 ~~I~l~G~~GsGKST~ 21 (183)
T 2vli_A 6 PIIWINGPFGVGKTHT 21 (183)
T ss_dssp CEEEEECCC----CHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 5688999999999964
No 343
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=37.13 E-value=10 Score=25.59 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=13.3
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
+-+++.+..|||||..
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTV 18 (173)
T ss_dssp CCEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 3578999999999874
No 344
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=36.88 E-value=13 Score=27.64 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=15.5
Q ss_pred cCCcEEEEeecCCCcccc
Q psy11948 39 ARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 39 ~~~d~i~~a~tgsGKt~~ 56 (167)
| ..+++.++.|+|||..
T Consensus 48 g-~~i~l~G~~GsGKSTl 64 (250)
T 3nwj_A 48 G-RSMYLVGMMGSGKTTV 64 (250)
T ss_dssp T-CCEEEECSTTSCHHHH
T ss_pred C-CEEEEECCCCCCHHHH
Confidence 6 8999999999999975
No 345
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=36.63 E-value=13 Score=28.41 Aligned_cols=16 Identities=38% Similarity=0.416 Sum_probs=14.3
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
..+++.++.|+|||..
T Consensus 46 ~~vli~G~~G~GKTtl 61 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAV 61 (386)
T ss_dssp CCEEEEECTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 6799999999999974
No 346
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=36.63 E-value=11 Score=26.75 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=12.7
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
.+++.++.|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999864
No 347
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=36.61 E-value=11 Score=27.95 Aligned_cols=16 Identities=25% Similarity=0.189 Sum_probs=13.4
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+++++..|||||..
T Consensus 5 ~lIvl~G~pGSGKSTl 20 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTF 20 (260)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred EEEEEEcCCCCCHHHH
Confidence 4578999999999974
No 348
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=36.56 E-value=11 Score=25.94 Aligned_cols=14 Identities=43% Similarity=0.389 Sum_probs=11.8
Q ss_pred EEEEeecCCCcccc
Q psy11948 43 IVGAAETGSGKTLA 56 (167)
Q Consensus 43 ~i~~a~tgsGKt~~ 56 (167)
+++.+..|||||..
T Consensus 3 I~l~G~~GsGKsT~ 16 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQ 16 (195)
T ss_dssp EEEECSTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67889999999863
No 349
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=36.53 E-value=12 Score=26.40 Aligned_cols=16 Identities=38% Similarity=0.079 Sum_probs=13.0
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+.+.+++|+|||..
T Consensus 22 ~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTL 37 (207)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4577899999999863
No 350
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=36.42 E-value=12 Score=29.37 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=14.9
Q ss_pred CcEEEEeecCCCccccc
Q psy11948 41 KDIVGAAETGSGKTLAF 57 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~ 57 (167)
.++++.+++|+|||...
T Consensus 36 ~~~~i~G~~G~GKs~~~ 52 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTA 52 (392)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CceEEEcCCCCCHHHHH
Confidence 68999999999999753
No 351
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=36.37 E-value=11 Score=26.78 Aligned_cols=16 Identities=25% Similarity=0.233 Sum_probs=13.3
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+.+.+++|||||..
T Consensus 6 ~~i~i~G~~GsGKSTl 21 (227)
T 1cke_A 6 PVITIDGPSGAGKGTL 21 (227)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4577899999999864
No 352
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=36.34 E-value=22 Score=27.30 Aligned_cols=16 Identities=31% Similarity=0.262 Sum_probs=14.0
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
..+++.++.|+|||..
T Consensus 46 ~~vll~G~~G~GKT~l 61 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFV 61 (384)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred CcEEEECCCCCCHHHH
Confidence 4699999999999973
No 353
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=36.05 E-value=11 Score=26.32 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=13.7
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+++.++.|||||..
T Consensus 21 ~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4688999999999974
No 354
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=35.93 E-value=14 Score=29.39 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=19.6
Q ss_pred cccceeeeecccCccceeeecchhhhhh
Q psy11948 81 ARKDIVGAAETGSGKTLAFGIPILTGIV 108 (167)
Q Consensus 81 ~~~d~~~~a~tgsgkt~~~~~p~i~~~~ 108 (167)
....+++.++||+|||..+ -.++..+.
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~ 78 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGL 78 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHH
Confidence 4577899999999999863 34444444
No 355
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=35.79 E-value=16 Score=25.91 Aligned_cols=30 Identities=17% Similarity=0.061 Sum_probs=20.2
Q ss_pred CchHHHhHHHHHHccCCcEEEEeecCCCcccc
Q psy11948 25 PTKIQSMVMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 25 pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
.++.+.... .+..| .-+++.+..|+|||..
T Consensus 12 ~~~~~r~~~-~~~~~-~~i~~~G~~GsGKsT~ 41 (211)
T 1m7g_A 12 LTRSERTEL-RNQRG-LTIWLTGLSASGKSTL 41 (211)
T ss_dssp CCHHHHHHH-HTSSC-EEEEEECSTTSSHHHH
T ss_pred cCHHHhhcc-cCCCC-CEEEEECCCCCCHHHH
Confidence 345555543 23334 6788999999999864
No 356
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=35.71 E-value=11 Score=25.95 Aligned_cols=14 Identities=36% Similarity=0.363 Sum_probs=11.7
Q ss_pred EEEEeecCCCcccc
Q psy11948 43 IVGAAETGSGKTLA 56 (167)
Q Consensus 43 ~i~~a~tgsGKt~~ 56 (167)
+++.++.|||||..
T Consensus 3 I~l~G~~GsGKsT~ 16 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQ 16 (197)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67889999999863
No 357
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=35.59 E-value=19 Score=27.40 Aligned_cols=16 Identities=25% Similarity=0.328 Sum_probs=13.7
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
..+++.+++|+|||..
T Consensus 59 ~~~ll~G~~G~GKT~l 74 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTST 74 (353)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 3599999999999964
No 358
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=35.52 E-value=12 Score=26.34 Aligned_cols=16 Identities=38% Similarity=0.368 Sum_probs=13.7
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+++.+++|+|||..
T Consensus 24 ~~~~i~G~~GsGKTtl 39 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIF 39 (235)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEEcCCCCCHHHH
Confidence 5678899999999964
No 359
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=35.49 E-value=12 Score=27.40 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=13.1
Q ss_pred CcEEEEeecCCCccc
Q psy11948 41 KDIVGAAETGSGKTL 55 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~ 55 (167)
.-+.+.+++|+|||.
T Consensus 32 e~~~iiG~nGsGKST 46 (235)
T 3tif_A 32 EFVSIMGPSGSGKST 46 (235)
T ss_dssp CEEEEECSTTSSHHH
T ss_pred CEEEEECCCCCcHHH
Confidence 567799999999996
No 360
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=35.40 E-value=13 Score=26.13 Aligned_cols=16 Identities=38% Similarity=0.202 Sum_probs=14.1
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+++.+..|||||..
T Consensus 11 ~~I~l~G~~GsGKST~ 26 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQ 26 (212)
T ss_dssp CEEEEEESTTSSHHHH
T ss_pred CEEEEEcCCCCCHHHH
Confidence 6788999999999974
No 361
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=35.39 E-value=39 Score=24.99 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=13.3
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
.+++.++.|+|||..
T Consensus 40 ~~ll~G~~G~GKt~l 54 (319)
T 2chq_A 40 HLLFSGPPGTGKTAT 54 (319)
T ss_dssp CEEEESSSSSSHHHH
T ss_pred eEEEECcCCcCHHHH
Confidence 599999999999964
No 362
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=35.34 E-value=13 Score=26.41 Aligned_cols=15 Identities=20% Similarity=0.153 Sum_probs=12.7
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
.+++.++.|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQ 16 (214)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999864
No 363
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=35.23 E-value=13 Score=26.23 Aligned_cols=16 Identities=25% Similarity=0.001 Sum_probs=13.0
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+.+.+++|+|||..
T Consensus 23 ~~i~i~G~~GsGKstl 38 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTL 38 (201)
T ss_dssp EEEEEEECTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3477899999999874
No 364
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=35.21 E-value=12 Score=30.27 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=14.3
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
+.+++.+++|+|||+.
T Consensus 168 ~~vLL~GppGtGKT~l 183 (444)
T 2zan_A 168 RGILLFGPPGTGKSYL 183 (444)
T ss_dssp SEEEEECSTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 6799999999999974
No 365
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=35.20 E-value=12 Score=25.55 Aligned_cols=15 Identities=40% Similarity=0.383 Sum_probs=13.0
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
.+++.++.|||||..
T Consensus 6 ~i~i~G~~GsGKsTl 20 (175)
T 1via_A 6 NIVFIGFMGSGKSTL 20 (175)
T ss_dssp CEEEECCTTSCHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 588999999999864
No 366
>1jmt_B Splicing factor U2AF 65 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens}
Probab=35.17 E-value=17 Score=17.69 Aligned_cols=14 Identities=36% Similarity=0.465 Sum_probs=11.6
Q ss_pred CCCCCCchHHHhHH
Q psy11948 20 KGFKTPTKIQSMVM 33 (167)
Q Consensus 20 ~g~~~pt~iQ~~~i 33 (167)
-||++.||.|.++.
T Consensus 13 ~GyE~vtp~qykam 26 (28)
T 1jmt_B 13 PGFEHITPMQYKAM 26 (28)
T ss_dssp TTCTTSCHHHHHHT
T ss_pred CCccccCHHHHhhc
Confidence 38999999998764
No 367
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=35.10 E-value=12 Score=25.24 Aligned_cols=15 Identities=27% Similarity=0.084 Sum_probs=12.6
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
.+++.+..|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEEESCTTSCHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 477899999999874
No 368
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=35.00 E-value=12 Score=26.34 Aligned_cols=16 Identities=25% Similarity=-0.053 Sum_probs=13.7
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+++.+++|+|||..
T Consensus 21 ~~~~i~G~~GsGKTtl 36 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTL 36 (220)
T ss_dssp SEEEEECSTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 5678999999999974
No 369
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=34.98 E-value=13 Score=26.47 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=13.9
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+++.++.|||||..
T Consensus 5 ~~I~l~G~~GsGKsT~ 20 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQ 20 (220)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 6788999999999964
No 370
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=34.86 E-value=12 Score=28.75 Aligned_cols=16 Identities=31% Similarity=0.380 Sum_probs=13.9
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
..+++.+++|+|||..
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 5689999999999974
No 371
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=34.60 E-value=13 Score=25.74 Aligned_cols=16 Identities=31% Similarity=0.179 Sum_probs=13.7
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+++.+..|+|||..
T Consensus 14 ~~i~l~G~~GsGKsT~ 29 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTI 29 (186)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred cEEEEEcCCCCCHHHH
Confidence 5688999999999874
No 372
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=34.53 E-value=7.4 Score=27.43 Aligned_cols=14 Identities=29% Similarity=0.311 Sum_probs=11.9
Q ss_pred EEEEeecCCCcccc
Q psy11948 43 IVGAAETGSGKTLA 56 (167)
Q Consensus 43 ~i~~a~tgsGKt~~ 56 (167)
+++.++.|||||..
T Consensus 3 I~i~G~~GsGKsTl 16 (214)
T 1gtv_A 3 IAIEGVDGAGKRTL 16 (214)
T ss_dssp EEEEEEEEEEHHHH
T ss_pred EEEEcCCCCCHHHH
Confidence 67899999999973
No 373
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=34.43 E-value=12 Score=25.62 Aligned_cols=16 Identities=31% Similarity=0.293 Sum_probs=13.5
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+++.+..|||||..
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTI 18 (184)
T ss_dssp CSEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4588999999999975
No 374
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=34.36 E-value=14 Score=29.03 Aligned_cols=14 Identities=36% Similarity=0.470 Sum_probs=12.0
Q ss_pred EEEEeecCCCcccc
Q psy11948 43 IVGAAETGSGKTLA 56 (167)
Q Consensus 43 ~i~~a~tgsGKt~~ 56 (167)
.++.++||+|||..
T Consensus 28 ~vi~G~NGaGKT~i 41 (371)
T 3auy_A 28 VAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEECTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56899999999974
No 375
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=34.10 E-value=14 Score=25.96 Aligned_cols=16 Identities=25% Similarity=0.150 Sum_probs=14.1
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+++.+..|||||..
T Consensus 10 ~~I~l~G~~GsGKsT~ 25 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQ 25 (215)
T ss_dssp CEEEEEESTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 6789999999999974
No 376
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=34.09 E-value=13 Score=25.54 Aligned_cols=15 Identities=27% Similarity=0.262 Sum_probs=13.5
Q ss_pred CcEEEEeecCCCccc
Q psy11948 41 KDIVGAAETGSGKTL 55 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~ 55 (167)
..+++.+..|+|||.
T Consensus 22 ~ki~v~G~~~~GKSs 36 (190)
T 2h57_A 22 VHVLCLGLDNSGKTT 36 (190)
T ss_dssp EEEEEEECTTSSHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 579999999999996
No 377
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=34.03 E-value=13 Score=28.68 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=13.5
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
.+++.+++|+|||..
T Consensus 46 ~~li~G~~G~GKTtl 60 (389)
T 1fnn_A 46 RATLLGRPGTGKTVT 60 (389)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 699999999999974
No 378
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=33.91 E-value=13 Score=26.17 Aligned_cols=14 Identities=36% Similarity=0.337 Sum_probs=11.8
Q ss_pred EEEEeecCCCcccc
Q psy11948 43 IVGAAETGSGKTLA 56 (167)
Q Consensus 43 ~i~~a~tgsGKt~~ 56 (167)
+.+.++.|||||..
T Consensus 5 i~l~G~~GsGKST~ 18 (206)
T 1jjv_A 5 VGLTGGIGSGKTTI 18 (206)
T ss_dssp EEEECSTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56889999999874
No 379
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=33.80 E-value=12 Score=26.99 Aligned_cols=16 Identities=25% Similarity=0.210 Sum_probs=14.0
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
..+++.+..|||||..
T Consensus 17 ~~I~l~G~~GsGKsT~ 32 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQ 32 (233)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 6789999999999964
No 380
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=33.73 E-value=15 Score=31.05 Aligned_cols=15 Identities=20% Similarity=0.339 Sum_probs=13.8
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
++++.+++|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999973
No 381
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=33.47 E-value=15 Score=26.22 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=14.1
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+++.+++|+|||..
T Consensus 24 ~~~~i~G~~GsGKTtl 39 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIF 39 (247)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 6788999999999975
No 382
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=33.40 E-value=13 Score=25.06 Aligned_cols=16 Identities=31% Similarity=0.328 Sum_probs=13.7
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
..+++.+..|||||..
T Consensus 8 ~~i~l~G~~GsGKSTv 23 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSL 23 (168)
T ss_dssp CEEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 5688999999999974
No 383
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=33.06 E-value=8.4 Score=32.63 Aligned_cols=28 Identities=29% Similarity=0.290 Sum_probs=22.5
Q ss_pred ccccceeeeecccCccc--eeeecchhhhh
Q psy11948 80 SARKDIVGAAETGSGKT--LAFGIPILTGI 107 (167)
Q Consensus 80 ~~~~d~~~~a~tgsgkt--~~~~~p~i~~~ 107 (167)
..++++++.+++|+||| ++++++.+..+
T Consensus 162 l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~ 191 (608)
T 1w36_D 162 LTRRISVISGGPGTGKTTTVAKLLAALIQM 191 (608)
T ss_dssp HTBSEEEEECCTTSTHHHHHHHHHHHHHHT
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 45788999999999999 77777776544
No 384
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=32.69 E-value=25 Score=26.23 Aligned_cols=15 Identities=40% Similarity=0.474 Sum_probs=13.5
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
.+++.++.|+|||..
T Consensus 48 ~~ll~G~~G~GKT~l 62 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTA 62 (327)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred eEEEECcCCCCHHHH
Confidence 699999999999974
No 385
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=32.61 E-value=15 Score=25.45 Aligned_cols=15 Identities=33% Similarity=0.284 Sum_probs=12.5
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
-+.+.+..|||||..
T Consensus 10 ~I~i~G~~GsGKST~ 24 (203)
T 1uf9_A 10 IIGITGNIGSGKSTV 24 (203)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999974
No 386
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=32.61 E-value=14 Score=25.28 Aligned_cols=16 Identities=25% Similarity=0.250 Sum_probs=13.5
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+++.+..|||||..
T Consensus 6 ~~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTV 21 (179)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 5678899999999874
No 387
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=32.59 E-value=14 Score=30.42 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=14.4
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
..+++.+++|+|||+.
T Consensus 239 ~~vLL~GppGtGKT~l 254 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLI 254 (489)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CcEEEECcCCCCHHHH
Confidence 6799999999999974
No 388
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=32.04 E-value=17 Score=26.44 Aligned_cols=16 Identities=25% Similarity=0.275 Sum_probs=13.3
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+.+.+++|+|||.-
T Consensus 31 e~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTL 46 (224)
T ss_dssp CEEEEEECTTSCHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5567899999999973
No 389
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=31.97 E-value=15 Score=25.80 Aligned_cols=15 Identities=40% Similarity=0.304 Sum_probs=12.2
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
-+++.+++|+|||..
T Consensus 8 ~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL 22 (174)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 467889999999873
No 390
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=31.88 E-value=15 Score=25.79 Aligned_cols=13 Identities=31% Similarity=0.084 Sum_probs=11.1
Q ss_pred EEEEeecCCCccc
Q psy11948 43 IVGAAETGSGKTL 55 (167)
Q Consensus 43 ~i~~a~tgsGKt~ 55 (167)
+.+.++.|||||.
T Consensus 7 i~i~G~sGsGKTT 19 (169)
T 1xjc_A 7 WQVVGYKHSGKTT 19 (169)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 5678899999987
No 391
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=31.86 E-value=15 Score=25.30 Aligned_cols=15 Identities=27% Similarity=0.286 Sum_probs=12.8
Q ss_pred CcEEEEeecCCCccc
Q psy11948 41 KDIVGAAETGSGKTL 55 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~ 55 (167)
.-+.+.++.|+|||.
T Consensus 34 e~v~L~G~nGaGKTT 48 (158)
T 1htw_A 34 IMVYLNGDLGAGKTT 48 (158)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 456789999999997
No 392
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=31.67 E-value=16 Score=29.45 Aligned_cols=16 Identities=25% Similarity=0.204 Sum_probs=14.3
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
..+++.+++|+|||..
T Consensus 131 ~~lll~Gp~G~GKTtL 146 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHL 146 (440)
T ss_dssp CCEEEECSSSSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 6899999999999974
No 393
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=31.58 E-value=15 Score=26.44 Aligned_cols=15 Identities=33% Similarity=0.395 Sum_probs=12.5
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
-+++.++.|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQ 16 (223)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 368899999999864
No 394
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=31.53 E-value=22 Score=36.39 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=19.7
Q ss_pred hHHHHHHccCCcEEEEeecCCCccc
Q psy11948 31 MVMPSALLARKDIVGAAETGSGKTL 55 (167)
Q Consensus 31 ~~ip~~l~~~~d~i~~a~tgsGKt~ 55 (167)
..+..++..++.+++++++|+|||.
T Consensus 1295 ~ll~~ll~~~~pvLL~GptGtGKT~ 1319 (3245)
T 3vkg_A 1295 DVLHAWLSEHRPLILCGPPGSGKTM 1319 (3245)
T ss_dssp HHHHHHHHTTCCCEEESSTTSSHHH
T ss_pred HHHHHHHHCCCcEEEECCCCCCHHH
Confidence 3445555666999999999999995
No 395
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=31.47 E-value=17 Score=29.65 Aligned_cols=17 Identities=35% Similarity=0.421 Sum_probs=14.7
Q ss_pred CCcEEEEeecCCCcccc
Q psy11948 40 RKDIVGAAETGSGKTLA 56 (167)
Q Consensus 40 ~~d~i~~a~tgsGKt~~ 56 (167)
..++++.+++|+|||..
T Consensus 201 ~~~~LL~G~pG~GKT~l 217 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAI 217 (468)
T ss_dssp SCEEEEESCTTTTTHHH
T ss_pred CCCeEEECCCCCCHHHH
Confidence 36899999999999973
No 396
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=31.43 E-value=15 Score=26.33 Aligned_cols=15 Identities=40% Similarity=0.406 Sum_probs=12.6
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
-.++.++.|||||+.
T Consensus 7 i~l~tG~pGsGKT~~ 21 (199)
T 2r2a_A 7 ICLITGTPGSGKTLK 21 (199)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 357899999999984
No 397
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=31.38 E-value=20 Score=30.94 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=19.3
Q ss_pred HHHHHHccCC-cEEEEeecCCCcccccc
Q psy11948 32 VMPSALLARK-DIVGAAETGSGKTLAFG 58 (167)
Q Consensus 32 ~ip~~l~~~~-d~i~~a~tgsGKt~~~~ 58 (167)
.+..++.|.+ .|+.-+.||||||.+..
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm~ 481 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTMS 481 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhccC
Confidence 4566777733 35567899999998763
No 398
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=31.34 E-value=12 Score=33.14 Aligned_cols=50 Identities=24% Similarity=0.329 Sum_probs=31.9
Q ss_pred ccccCCCCHHHHHHHHHCC---CCCCchHHHhHHHHHHccCCcEEEEeecCCCcccc
Q psy11948 3 EWVKFNIPETIIRALYQKG---FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~g---~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
+|.+++.-+...+.|.+.= +..|.-.+... +.-.+.+++.++.|+|||+.
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g----~~~~~gvLl~GPPGtGKT~l 527 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG----MTPSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC----CCCCSCCEEESSTTSSHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC----CCCCceEEEecCCCCCchHH
Confidence 6888887788888887642 22222221111 11236799999999999975
No 399
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=30.97 E-value=18 Score=30.08 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=14.7
Q ss_pred CcEEEEeecCCCccccc
Q psy11948 41 KDIVGAAETGSGKTLAF 57 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~ 57 (167)
-.+++.+.||||||.+.
T Consensus 168 pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGV 184 (512)
T ss_dssp CSEEEECCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57999999999999753
No 400
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=30.83 E-value=16 Score=26.75 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=13.5
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+.+.+++|+|||..
T Consensus 32 e~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSL 47 (237)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5677999999999873
No 401
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=30.81 E-value=12 Score=27.47 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=13.5
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+++.++.|||||..
T Consensus 33 ~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTI 48 (253)
T ss_dssp EEEEEESCGGGTTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4588999999999974
No 402
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=30.81 E-value=16 Score=27.03 Aligned_cols=15 Identities=33% Similarity=0.333 Sum_probs=12.2
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
-+.+.+++|+|||.-
T Consensus 26 ~~~liG~nGsGKSTL 40 (240)
T 2onk_A 26 YCVLLGPTGAGKSVF 40 (240)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 355889999999974
No 403
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=30.80 E-value=15 Score=29.82 Aligned_cols=15 Identities=27% Similarity=0.359 Sum_probs=13.5
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
.+++.+++|+|||..
T Consensus 52 ~vLL~GppGtGKTtl 66 (447)
T 3pvs_A 52 SMILWGPPGTGKTTL 66 (447)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCcHHHH
Confidence 689999999999974
No 404
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=30.55 E-value=18 Score=25.65 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=13.8
Q ss_pred CcEEEEeecCCCccccc
Q psy11948 41 KDIVGAAETGSGKTLAF 57 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~ 57 (167)
.-+.+.+++|+|||..+
T Consensus 2 ~~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CCEEEESCCSSCHHHHH
T ss_pred CEEEEECCCCChHHHHH
Confidence 45778999999999854
No 405
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=30.41 E-value=16 Score=25.92 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=13.1
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+.+.+..|||||..
T Consensus 5 ~~I~i~G~~GSGKST~ 20 (218)
T 1vht_A 5 YIVALTGGIGSGKSTV 20 (218)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3577899999999974
No 406
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=30.40 E-value=17 Score=26.03 Aligned_cols=15 Identities=33% Similarity=0.501 Sum_probs=13.3
Q ss_pred CcEEEEeecCCCccc
Q psy11948 41 KDIVGAAETGSGKTL 55 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~ 55 (167)
.-+++.+++|+|||.
T Consensus 31 ~l~~i~G~pG~GKT~ 45 (251)
T 2zts_A 31 TTVLLTGGTGTGKTT 45 (251)
T ss_dssp CEEEEECCTTSSHHH
T ss_pred eEEEEEeCCCCCHHH
Confidence 568899999999996
No 407
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=30.33 E-value=17 Score=27.26 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=14.3
Q ss_pred CcEEEEeecCCCccccc
Q psy11948 41 KDIVGAAETGSGKTLAF 57 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~ 57 (167)
.-+++.+++|+|||...
T Consensus 36 ~~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFV 52 (296)
T ss_dssp CEEEEEESTTSSHHHHH
T ss_pred eEEEEEeCCCCCHHHHH
Confidence 66889999999999743
No 408
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=30.30 E-value=16 Score=26.87 Aligned_cols=16 Identities=31% Similarity=0.320 Sum_probs=13.5
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+.+.+++|+|||.-
T Consensus 29 e~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTI 44 (243)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5677999999999973
No 409
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=30.29 E-value=16 Score=26.08 Aligned_cols=17 Identities=24% Similarity=-0.007 Sum_probs=14.3
Q ss_pred CcEEEEeecCCCccccc
Q psy11948 41 KDIVGAAETGSGKTLAF 57 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~ 57 (167)
.-+.+.+++|+|||...
T Consensus 25 ~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQIC 41 (243)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 56889999999999743
No 410
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=30.28 E-value=16 Score=27.64 Aligned_cols=16 Identities=19% Similarity=0.142 Sum_probs=13.4
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+.+.+++|+|||..
T Consensus 35 e~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTL 50 (275)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5577899999999973
No 411
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=30.23 E-value=16 Score=28.03 Aligned_cols=16 Identities=31% Similarity=0.387 Sum_probs=13.1
Q ss_pred cEEEEeecCCCccccc
Q psy11948 42 DIVGAAETGSGKTLAF 57 (167)
Q Consensus 42 d~i~~a~tgsGKt~~~ 57 (167)
-+.+.+++|+|||...
T Consensus 102 vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4668999999999854
No 412
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=30.11 E-value=17 Score=29.99 Aligned_cols=50 Identities=26% Similarity=0.296 Sum_probs=27.1
Q ss_pred ccccCCCCHHHHHHHHHC--CCCCCchHHHhHHHHHHccCCcEEEEeecCCCcccc
Q psy11948 3 EWVKFNIPETIIRALYQK--GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~--g~~~pt~iQ~~~ip~~l~~~~d~i~~a~tgsGKt~~ 56 (167)
+|+++.=..+.++.+.+. .+..|...+...+ .-.+.+++.+++|+|||+.
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~----~~p~gvLL~GppGtGKT~L 65 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGA----RMPKGILLVGPPGTGKTLL 65 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTC----CCCSEEEEECCTTSSHHHH
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCC----CCCCeEEEECCCCCCHHHH
Confidence 577776555555555432 1112211111110 1125699999999999974
No 413
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=30.10 E-value=16 Score=27.81 Aligned_cols=14 Identities=36% Similarity=0.541 Sum_probs=11.7
Q ss_pred EEEEeecCCCcccc
Q psy11948 43 IVGAAETGSGKTLA 56 (167)
Q Consensus 43 ~i~~a~tgsGKt~~ 56 (167)
+.+.+++|+|||..
T Consensus 34 i~I~G~sGsGKSTl 47 (290)
T 1odf_A 34 IFFSGPQGSGKSFT 47 (290)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56889999999874
No 414
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=29.99 E-value=19 Score=25.62 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=13.8
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
..+++.+..|||||..
T Consensus 6 ~~I~l~G~~GsGKsT~ 21 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQ 21 (217)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 5688999999999974
No 415
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=29.93 E-value=16 Score=27.29 Aligned_cols=15 Identities=33% Similarity=0.288 Sum_probs=12.7
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
-+++.+..|||||..
T Consensus 4 ~I~l~G~~GsGKST~ 18 (301)
T 1ltq_A 4 IILTIGCPGSGKSTW 18 (301)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999974
No 416
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=29.80 E-value=17 Score=26.66 Aligned_cols=16 Identities=25% Similarity=0.235 Sum_probs=13.9
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+++.++.|||||..
T Consensus 30 ~~I~l~G~~GsGKsT~ 45 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQ 45 (243)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 5689999999999864
No 417
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=29.73 E-value=19 Score=26.03 Aligned_cols=16 Identities=25% Similarity=0.167 Sum_probs=13.6
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+.+.+++|+|||.-
T Consensus 36 e~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTL 51 (214)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5677899999999973
No 418
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=29.71 E-value=16 Score=28.10 Aligned_cols=15 Identities=27% Similarity=0.153 Sum_probs=12.4
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
-+.+.+++|||||..
T Consensus 92 ivgI~G~sGsGKSTL 106 (312)
T 3aez_A 92 IIGVAGSVAVGKSTT 106 (312)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCchHHHH
Confidence 466889999999974
No 419
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=29.56 E-value=18 Score=26.33 Aligned_cols=16 Identities=38% Similarity=0.405 Sum_probs=13.5
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+.+.+++|+|||.-
T Consensus 35 e~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSL 50 (229)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5677999999999973
No 420
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=29.42 E-value=18 Score=24.54 Aligned_cols=15 Identities=20% Similarity=0.293 Sum_probs=13.7
Q ss_pred CcEEEEeecCCCccc
Q psy11948 41 KDIVGAAETGSGKTL 55 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~ 55 (167)
..+++.+..|+|||.
T Consensus 22 ~~i~v~G~~~~GKSs 36 (181)
T 2h17_A 22 HKVIIVGLDNAGKTT 36 (181)
T ss_dssp EEEEEEEETTSSHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 579999999999996
No 421
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=29.12 E-value=16 Score=26.06 Aligned_cols=15 Identities=27% Similarity=0.211 Sum_probs=12.2
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
=.++.+++|+|||..
T Consensus 25 ~~~I~G~NgsGKSti 39 (203)
T 3qks_A 25 INLIIGQNGSGKSSL 39 (203)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEEcCCCCCHHHH
Confidence 356789999999975
No 422
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=29.11 E-value=17 Score=26.49 Aligned_cols=17 Identities=29% Similarity=0.108 Sum_probs=13.2
Q ss_pred CcEEEEeecCCCccccc
Q psy11948 41 KDIVGAAETGSGKTLAF 57 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~ 57 (167)
.=+.+.+++|||||...
T Consensus 26 ~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVC 42 (245)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 34668899999999743
No 423
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=28.96 E-value=18 Score=26.81 Aligned_cols=16 Identities=25% Similarity=0.243 Sum_probs=13.5
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+.+.+++|+|||.-
T Consensus 34 e~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTL 49 (257)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5677999999999973
No 424
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=28.71 E-value=17 Score=27.87 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=13.4
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+.+.+++|+|||..
T Consensus 103 ~vi~lvG~nGsGKTTl 118 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTT 118 (304)
T ss_dssp SEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 5677899999999974
No 425
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=28.48 E-value=19 Score=27.65 Aligned_cols=14 Identities=29% Similarity=0.245 Sum_probs=11.9
Q ss_pred EEEEeecCCCcccc
Q psy11948 43 IVGAAETGSGKTLA 56 (167)
Q Consensus 43 ~i~~a~tgsGKt~~ 56 (167)
+++.++.|+|||..
T Consensus 7 ~~i~G~~GaGKTTl 20 (318)
T 1nij_A 7 TLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEESSSSSCHHH
T ss_pred EEEEecCCCCHHHH
Confidence 56889999999974
No 426
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=28.42 E-value=17 Score=29.89 Aligned_cols=16 Identities=31% Similarity=0.312 Sum_probs=14.3
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
+.+++.+++|+|||..
T Consensus 78 ~~lLL~GppGtGKTtl 93 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTA 93 (516)
T ss_dssp SEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 6799999999999974
No 427
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=28.42 E-value=18 Score=27.13 Aligned_cols=15 Identities=27% Similarity=0.481 Sum_probs=12.5
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
.+.+.+++|+|||..
T Consensus 4 ~v~lvG~nGaGKSTL 18 (270)
T 3sop_A 4 NIMVVGQSGLGKSTL 18 (270)
T ss_dssp EEEEEESSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999863
No 428
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=28.20 E-value=19 Score=26.93 Aligned_cols=16 Identities=19% Similarity=0.275 Sum_probs=13.4
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+.+.+++|+|||..
T Consensus 38 e~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTL 53 (266)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CEEEEECCCCCcHHHH
Confidence 5677899999999973
No 429
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=28.16 E-value=19 Score=26.79 Aligned_cols=16 Identities=31% Similarity=0.339 Sum_probs=13.8
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+.+.+++|+|||.-
T Consensus 47 e~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTI 62 (260)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 6678999999999974
No 430
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=28.13 E-value=21 Score=29.20 Aligned_cols=16 Identities=44% Similarity=0.495 Sum_probs=14.4
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
+.+++.+++|+|||..
T Consensus 51 ~~iLl~GppGtGKT~l 66 (444)
T 1g41_A 51 KNILMIGPTGVGKTEI 66 (444)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred ceEEEEcCCCCCHHHH
Confidence 6799999999999874
No 431
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=28.09 E-value=30 Score=29.12 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=16.6
Q ss_pred HHccCCcEEEEeecCCCcccc
Q psy11948 36 ALLARKDIVGAAETGSGKTLA 56 (167)
Q Consensus 36 ~l~~~~d~i~~a~tgsGKt~~ 56 (167)
+..| ..+++.+++|+|||..
T Consensus 57 i~~g-~~vll~Gp~GtGKTtl 76 (604)
T 3k1j_A 57 ANQK-RHVLLIGEPGTGKSML 76 (604)
T ss_dssp HHTT-CCEEEECCTTSSHHHH
T ss_pred ccCC-CEEEEEeCCCCCHHHH
Confidence 3345 8999999999999974
No 432
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=28.04 E-value=39 Score=25.75 Aligned_cols=14 Identities=29% Similarity=0.387 Sum_probs=12.7
Q ss_pred EEEEeecCCCcccc
Q psy11948 43 IVGAAETGSGKTLA 56 (167)
Q Consensus 43 ~i~~a~tgsGKt~~ 56 (167)
+++.++.|+|||..
T Consensus 49 ~ll~Gp~G~GKTtl 62 (340)
T 1sxj_C 49 LLFYGPPGTGKTST 62 (340)
T ss_dssp EEEECSSSSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 89999999999964
No 433
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=27.51 E-value=20 Score=26.46 Aligned_cols=16 Identities=31% Similarity=0.306 Sum_probs=13.6
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+.+.+++|+|||..
T Consensus 36 e~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTL 51 (247)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5677999999999973
No 434
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=27.37 E-value=20 Score=27.69 Aligned_cols=17 Identities=12% Similarity=0.239 Sum_probs=14.4
Q ss_pred CCcEEEEeecCCCcccc
Q psy11948 40 RKDIVGAAETGSGKTLA 56 (167)
Q Consensus 40 ~~d~i~~a~tgsGKt~~ 56 (167)
+.-+.+.+++|+|||..
T Consensus 126 Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSML 142 (305)
T ss_dssp CSEEEEECSSSSSHHHH
T ss_pred CCEEEEECCCCCcHHHH
Confidence 37788999999999873
No 435
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=27.35 E-value=21 Score=26.24 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=13.4
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+.+.+++|+|||.-
T Consensus 33 e~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTT 48 (240)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5677899999999973
No 436
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=27.24 E-value=19 Score=25.97 Aligned_cols=15 Identities=33% Similarity=0.395 Sum_probs=12.8
Q ss_pred CcEEEEeecCCCccc
Q psy11948 41 KDIVGAAETGSGKTL 55 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~ 55 (167)
.-+.+.+++|+|||.
T Consensus 21 ~~i~i~G~~GsGKST 35 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTT 35 (230)
T ss_dssp EEEEEECSTTSCHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 457789999999997
No 437
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=27.02 E-value=22 Score=27.09 Aligned_cols=17 Identities=47% Similarity=0.503 Sum_probs=13.9
Q ss_pred CcEEEEeecCCCccccc
Q psy11948 41 KDIVGAAETGSGKTLAF 57 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~ 57 (167)
.-+++.+++|+|||...
T Consensus 106 ~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 56778999999999743
No 438
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=27.01 E-value=21 Score=26.59 Aligned_cols=16 Identities=31% Similarity=0.293 Sum_probs=13.3
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+.+.+++|+|||..
T Consensus 33 e~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTF 48 (262)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5567899999999973
No 439
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=26.88 E-value=21 Score=27.61 Aligned_cols=15 Identities=27% Similarity=0.339 Sum_probs=12.3
Q ss_pred EEEEeecCCCccccc
Q psy11948 43 IVGAAETGSGKTLAF 57 (167)
Q Consensus 43 ~i~~a~tgsGKt~~~ 57 (167)
.++.+++|+|||..+
T Consensus 26 ~~i~G~NGsGKS~ll 40 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLL 40 (339)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 457999999999753
No 440
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=26.72 E-value=21 Score=27.13 Aligned_cols=16 Identities=25% Similarity=0.123 Sum_probs=12.7
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+.+.+++|||||..
T Consensus 81 ~iigI~G~~GsGKSTl 96 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTT 96 (308)
T ss_dssp EEEEEEECTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 3466889999999974
No 441
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=26.70 E-value=17 Score=26.70 Aligned_cols=17 Identities=18% Similarity=-0.103 Sum_probs=13.2
Q ss_pred CcEEEEeecCCCccccc
Q psy11948 41 KDIVGAAETGSGKTLAF 57 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~ 57 (167)
.=+++.++.|+|||...
T Consensus 13 ~i~litG~mGsGKTT~l 29 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAEL 29 (223)
T ss_dssp EEEEEECSTTSCHHHHH
T ss_pred EEEEEECCCCCcHHHHH
Confidence 45667888899999854
No 442
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=26.59 E-value=23 Score=26.34 Aligned_cols=19 Identities=16% Similarity=0.100 Sum_probs=15.5
Q ss_pred ccCCcEEEEeecCCCccccc
Q psy11948 38 LARKDIVGAAETGSGKTLAF 57 (167)
Q Consensus 38 ~~~~d~i~~a~tgsGKt~~~ 57 (167)
.| .-+++.+++|+|||...
T Consensus 29 ~G-~i~~i~G~~GsGKTtl~ 47 (279)
T 1nlf_A 29 AG-TVGALVSPGGAGKSMLA 47 (279)
T ss_dssp TT-SEEEEEESTTSSHHHHH
T ss_pred CC-CEEEEEcCCCCCHHHHH
Confidence 44 77889999999999743
No 443
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=26.57 E-value=22 Score=26.61 Aligned_cols=16 Identities=38% Similarity=0.484 Sum_probs=13.4
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+.+.+++|+|||.-
T Consensus 34 e~~~liG~nGsGKSTL 49 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTL 49 (266)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCcHHHH
Confidence 5677899999999973
No 444
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=26.55 E-value=22 Score=26.37 Aligned_cols=16 Identities=19% Similarity=0.229 Sum_probs=13.5
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+.+.+++|+|||.-
T Consensus 27 e~~~liG~NGsGKSTL 42 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTL 42 (249)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCcHHHH
Confidence 5677999999999974
No 445
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=26.10 E-value=23 Score=30.62 Aligned_cols=17 Identities=35% Similarity=0.421 Sum_probs=14.8
Q ss_pred CCcEEEEeecCCCcccc
Q psy11948 40 RKDIVGAAETGSGKTLA 56 (167)
Q Consensus 40 ~~d~i~~a~tgsGKt~~ 56 (167)
..++++.+++|+|||..
T Consensus 201 ~~~vLL~G~pGtGKT~l 217 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAI 217 (758)
T ss_dssp SCEEEEESCTTTTTHHH
T ss_pred CCCeEEECCCCCCHHHH
Confidence 36899999999999974
No 446
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=26.05 E-value=22 Score=26.93 Aligned_cols=14 Identities=21% Similarity=0.411 Sum_probs=8.8
Q ss_pred EEEEeecCCCcccc
Q psy11948 43 IVGAAETGSGKTLA 56 (167)
Q Consensus 43 ~i~~a~tgsGKt~~ 56 (167)
+.+.++.|||||..
T Consensus 8 IgItG~sGSGKSTv 21 (290)
T 1a7j_A 8 ISVTGSSGAGTSTV 21 (290)
T ss_dssp EEEESCC---CCTH
T ss_pred EEEECCCCCCHHHH
Confidence 66889999999974
No 447
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=25.95 E-value=25 Score=22.89 Aligned_cols=14 Identities=29% Similarity=0.444 Sum_probs=12.5
Q ss_pred cEEEEeecCCCccc
Q psy11948 42 DIVGAAETGSGKTL 55 (167)
Q Consensus 42 d~i~~a~tgsGKt~ 55 (167)
.+++.+.+|+|||.
T Consensus 5 ~i~v~G~~~~GKss 18 (166)
T 2ce2_X 5 KLVVVGAGGVGKSA 18 (166)
T ss_dssp EEEEEESTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 57899999999996
No 448
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=25.81 E-value=26 Score=26.74 Aligned_cols=15 Identities=27% Similarity=0.202 Sum_probs=12.6
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
-.++.+++|+|||..
T Consensus 26 ~~~i~G~NGsGKS~l 40 (322)
T 1e69_A 26 VTAIVGPNGSGKSNI 40 (322)
T ss_dssp EEEEECCTTTCSTHH
T ss_pred cEEEECCCCCcHHHH
Confidence 466899999999974
No 449
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=25.74 E-value=23 Score=26.51 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=13.3
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+.+.+++|+|||.-
T Consensus 51 ei~~liG~NGsGKSTL 66 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTF 66 (263)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CEEEEEcCCCCcHHHH
Confidence 5567899999999973
No 450
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=25.71 E-value=23 Score=26.26 Aligned_cols=16 Identities=19% Similarity=0.279 Sum_probs=13.3
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+.+.+++|+|||.-
T Consensus 32 e~~~l~G~nGsGKSTL 47 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTL 47 (253)
T ss_dssp CEEEEECCSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5577899999999973
No 451
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=25.63 E-value=22 Score=26.16 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=13.7
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+.+.+++|||||..
T Consensus 28 ~~I~I~G~~GsGKSTl 43 (252)
T 4e22_A 28 PVITVDGPSGAGKGTL 43 (252)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 5678999999999864
No 452
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=25.59 E-value=23 Score=26.14 Aligned_cols=17 Identities=18% Similarity=0.059 Sum_probs=13.9
Q ss_pred CcEEEEeecCCCccccc
Q psy11948 41 KDIVGAAETGSGKTLAF 57 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~ 57 (167)
.-+.+.+++|+|||.-+
T Consensus 30 e~~~l~G~nGsGKSTLl 46 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLG 46 (250)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 56779999999999743
No 453
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=25.53 E-value=24 Score=23.03 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=12.2
Q ss_pred cEEEEeecCCCccc
Q psy11948 42 DIVGAAETGSGKTL 55 (167)
Q Consensus 42 d~i~~a~tgsGKt~ 55 (167)
.+++.+.+|+|||.
T Consensus 3 ki~v~G~~~~GKSs 16 (161)
T 2dyk_A 3 KVVIVGRPNVGKSS 16 (161)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47889999999995
No 454
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=25.52 E-value=24 Score=26.43 Aligned_cols=16 Identities=25% Similarity=0.192 Sum_probs=13.5
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+.+.+++|+|||..
T Consensus 47 e~~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTL 62 (267)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5677999999999974
No 455
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=25.52 E-value=24 Score=24.47 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=13.8
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
..+.+.+++|+|||..
T Consensus 27 ~~v~lvG~~g~GKSTL 42 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSA 42 (210)
T ss_dssp EEEEEEECTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 5688999999999963
No 456
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=25.43 E-value=24 Score=26.69 Aligned_cols=16 Identities=25% Similarity=0.239 Sum_probs=13.3
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+.+.+++|+|||.-
T Consensus 48 e~~~liG~NGsGKSTL 63 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTL 63 (279)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCcHHHH
Confidence 5577899999999973
No 457
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=25.37 E-value=20 Score=25.11 Aligned_cols=17 Identities=35% Similarity=0.173 Sum_probs=13.4
Q ss_pred CcEEEEeecCCCccccc
Q psy11948 41 KDIVGAAETGSGKTLAF 57 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~ 57 (167)
.=.++.++.|+|||...
T Consensus 4 ~i~vi~G~~gsGKTT~l 20 (184)
T 2orw_A 4 KLTVITGPMYSGKTTEL 20 (184)
T ss_dssp CEEEEEESTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 44668899999999854
No 458
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=25.32 E-value=24 Score=26.29 Aligned_cols=16 Identities=25% Similarity=0.204 Sum_probs=13.4
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+.+.+++|+|||.-
T Consensus 42 ei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTT 57 (256)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 5577899999999973
No 459
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=25.29 E-value=10 Score=26.51 Aligned_cols=16 Identities=25% Similarity=0.181 Sum_probs=12.3
Q ss_pred cEEEEeecCCCccccc
Q psy11948 42 DIVGAAETGSGKTLAF 57 (167)
Q Consensus 42 d~i~~a~tgsGKt~~~ 57 (167)
-+.+.+++|+|||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3567889999999743
No 460
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=25.17 E-value=24 Score=26.51 Aligned_cols=16 Identities=31% Similarity=0.312 Sum_probs=13.4
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+.+.+++|+|||.-
T Consensus 46 e~~~i~G~nGsGKSTL 61 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTV 61 (271)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5677899999999973
No 461
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=24.77 E-value=22 Score=28.03 Aligned_cols=16 Identities=31% Similarity=0.387 Sum_probs=13.2
Q ss_pred cEEEEeecCCCccccc
Q psy11948 42 DIVGAAETGSGKTLAF 57 (167)
Q Consensus 42 d~i~~a~tgsGKt~~~ 57 (167)
-+.+.+++|+|||...
T Consensus 159 vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCChHHHHH
Confidence 4668999999999854
No 462
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=24.67 E-value=23 Score=27.52 Aligned_cols=16 Identities=38% Similarity=0.272 Sum_probs=13.4
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+.+.+++|+|||..
T Consensus 130 ~vi~lvG~nGaGKTTl 145 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTT 145 (328)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4577899999999974
No 463
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=24.67 E-value=22 Score=30.08 Aligned_cols=18 Identities=33% Similarity=0.543 Sum_probs=15.0
Q ss_pred CcEEEEeecCCCcccccc
Q psy11948 41 KDIVGAAETGSGKTLAFG 58 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~~~ 58 (167)
-++++.+.||||||.+..
T Consensus 215 pHlLIaG~TGSGKS~~L~ 232 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVN 232 (574)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CeeEEECCCCCCHHHHHH
Confidence 578999999999997543
No 464
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=24.63 E-value=25 Score=26.42 Aligned_cols=15 Identities=27% Similarity=0.228 Sum_probs=12.7
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
-|.+.+..|||||..
T Consensus 77 iI~I~G~~GSGKSTv 91 (281)
T 2f6r_A 77 VLGLTGISGSGKSSV 91 (281)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477899999999864
No 465
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=24.26 E-value=24 Score=27.44 Aligned_cols=14 Identities=29% Similarity=0.226 Sum_probs=11.9
Q ss_pred EEEEeecCCCcccc
Q psy11948 43 IVGAAETGSGKTLA 56 (167)
Q Consensus 43 ~i~~a~tgsGKt~~ 56 (167)
+.+.+++|||||..
T Consensus 95 igI~GpsGSGKSTl 108 (321)
T 3tqc_A 95 IGIAGSVAVGKSTT 108 (321)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 66889999999974
No 466
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=24.17 E-value=26 Score=24.12 Aligned_cols=14 Identities=29% Similarity=0.487 Sum_probs=12.3
Q ss_pred cEEEEeecCCCccc
Q psy11948 42 DIVGAAETGSGKTL 55 (167)
Q Consensus 42 d~i~~a~tgsGKt~ 55 (167)
.+++.+++|+|||.
T Consensus 31 kv~lvG~~g~GKST 44 (191)
T 1oix_A 31 KVVLIGDSGVGKSN 44 (191)
T ss_dssp EEEEEECTTSSHHH
T ss_pred EEEEECcCCCCHHH
Confidence 47899999999996
No 467
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=23.96 E-value=26 Score=22.97 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=12.5
Q ss_pred cEEEEeecCCCccc
Q psy11948 42 DIVGAAETGSGKTL 55 (167)
Q Consensus 42 d~i~~a~tgsGKt~ 55 (167)
.+++.+.+|+|||.
T Consensus 7 ~i~v~G~~~~GKss 20 (168)
T 1z2a_A 7 KMVVVGNGAVGKSS 20 (168)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECcCCCCHHH
Confidence 57899999999996
No 468
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=23.88 E-value=76 Score=19.85 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=26.1
Q ss_pred CCccccCC-CCHHHHHHHHHCCCCCCchHHHhH
Q psy11948 1 MAEWVKFN-IPETIIRALYQKGFKTPTKIQSMV 32 (167)
Q Consensus 1 ~~~f~~l~-l~~~l~~~l~~~g~~~pt~iQ~~~ 32 (167)
|..+.+|+ |.+.+-+.|.+.||..+...+...
T Consensus 3 ~~~L~~LPNiG~~~e~~L~~vGI~s~e~L~~~G 35 (93)
T 3bqs_A 3 LANLSELPNIGKVLEQDLIKAGIKTPVELKDVG 35 (93)
T ss_dssp CSCGGGSTTCCHHHHHHHHHTTCCSHHHHHHHH
T ss_pred hHHhhcCCCCCHHHHHHHHHcCCCCHHHHHhCC
Confidence 45677777 999999999999999888776643
No 469
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=23.86 E-value=23 Score=27.06 Aligned_cols=15 Identities=27% Similarity=0.266 Sum_probs=13.0
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
-+++.++.|+|||..
T Consensus 40 ~~ll~G~~G~GKT~l 54 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSI 54 (373)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999964
No 470
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=23.73 E-value=42 Score=25.10 Aligned_cols=16 Identities=13% Similarity=-0.110 Sum_probs=14.3
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+++.++.|+|||..
T Consensus 32 ~~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSL 47 (350)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred CeEEEECCCcCCHHHH
Confidence 7899999999999963
No 471
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=23.69 E-value=24 Score=25.73 Aligned_cols=15 Identities=33% Similarity=0.195 Sum_probs=12.4
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
-|.+.++.|||||..
T Consensus 24 iI~I~G~~GSGKST~ 38 (252)
T 1uj2_A 24 LIGVSGGTASGKSSV 38 (252)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467889999999964
No 472
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=23.67 E-value=26 Score=26.18 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=13.6
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+.+.+++|+|||..
T Consensus 31 e~~~i~G~NGsGKSTL 46 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTL 46 (263)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 5677899999999973
No 473
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=23.40 E-value=25 Score=29.23 Aligned_cols=16 Identities=31% Similarity=0.233 Sum_probs=14.2
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
..+++.+++|+|||..
T Consensus 109 ~~vll~Gp~GtGKTtl 124 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSL 124 (543)
T ss_dssp CEEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5799999999999974
No 474
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=23.32 E-value=27 Score=23.73 Aligned_cols=15 Identities=40% Similarity=0.395 Sum_probs=13.4
Q ss_pred CcEEEEeecCCCccc
Q psy11948 41 KDIVGAAETGSGKTL 55 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~ 55 (167)
..+++.+.+|+|||.
T Consensus 49 ~~i~vvG~~g~GKSs 63 (193)
T 2ged_A 49 PSIIIAGPQNSGKTS 63 (193)
T ss_dssp CEEEEECCTTSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 578999999999995
No 475
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=23.13 E-value=26 Score=24.83 Aligned_cols=15 Identities=27% Similarity=0.322 Sum_probs=12.1
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
-+.+.+..|||||..
T Consensus 14 iIgltG~~GSGKSTv 28 (192)
T 2grj_A 14 VIGVTGKIGTGKSTV 28 (192)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 466888999999874
No 476
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=23.11 E-value=30 Score=22.71 Aligned_cols=14 Identities=29% Similarity=0.506 Sum_probs=12.5
Q ss_pred cEEEEeecCCCccc
Q psy11948 42 DIVGAAETGSGKTL 55 (167)
Q Consensus 42 d~i~~a~tgsGKt~ 55 (167)
.+++.+.+|+|||.
T Consensus 5 ~i~v~G~~~~GKss 18 (170)
T 1g16_A 5 KILLIGDSGVGKSC 18 (170)
T ss_dssp EEEEEESTTSSHHH
T ss_pred EEEEECcCCCCHHH
Confidence 57899999999996
No 477
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=23.06 E-value=31 Score=23.42 Aligned_cols=15 Identities=27% Similarity=0.339 Sum_probs=13.5
Q ss_pred CcEEEEeecCCCccc
Q psy11948 41 KDIVGAAETGSGKTL 55 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~ 55 (167)
..+++.+.+|+|||.
T Consensus 24 ~~i~v~G~~~~GKSs 38 (195)
T 1svi_A 24 PEIALAGRSNVGKSS 38 (195)
T ss_dssp CEEEEEEBTTSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 579999999999996
No 478
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=23.02 E-value=31 Score=23.27 Aligned_cols=15 Identities=13% Similarity=0.240 Sum_probs=13.3
Q ss_pred CcEEEEeecCCCccc
Q psy11948 41 KDIVGAAETGSGKTL 55 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~ 55 (167)
..+++.+.+|+|||.
T Consensus 24 ~~i~v~G~~~~GKSs 38 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSS 38 (195)
T ss_dssp CEEEEEEBTTSSHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 468999999999995
No 479
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=22.96 E-value=25 Score=29.10 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=13.8
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
+.+++.+++|+|||+.
T Consensus 65 ~GvLL~GppGtGKTtL 80 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHL 80 (499)
T ss_dssp SEEEEECSSSSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4599999999999974
No 480
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=22.78 E-value=26 Score=24.24 Aligned_cols=15 Identities=20% Similarity=0.180 Sum_probs=12.0
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
-+.+.++.|||||..
T Consensus 4 ~i~i~G~~GsGKst~ 18 (208)
T 3ake_A 4 IVTIDGPSASGKSSV 18 (208)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 356788999999864
No 481
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=22.48 E-value=29 Score=23.06 Aligned_cols=15 Identities=27% Similarity=0.432 Sum_probs=13.2
Q ss_pred CcEEEEeecCCCccc
Q psy11948 41 KDIVGAAETGSGKTL 55 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~ 55 (167)
..+++.+.+|+|||.
T Consensus 9 ~~i~v~G~~~~GKSs 23 (182)
T 1ky3_A 9 LKVIILGDSGVGKTS 23 (182)
T ss_dssp EEEEEECCTTSSHHH
T ss_pred EEEEEECCCCCCHHH
Confidence 468899999999996
No 482
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=22.47 E-value=29 Score=22.74 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=12.9
Q ss_pred CcEEEEeecCCCccc
Q psy11948 41 KDIVGAAETGSGKTL 55 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~ 55 (167)
..+++.+.+|+|||.
T Consensus 7 ~~i~v~G~~~~GKSs 21 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSS 21 (170)
T ss_dssp EEEEEECCTTSSHHH
T ss_pred eEEEEECcCCCCHHH
Confidence 358899999999996
No 483
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=22.31 E-value=23 Score=31.05 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=14.4
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
..+++.+++|+|||+.
T Consensus 239 ~~vLL~Gp~GtGKTtL 254 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLI 254 (806)
T ss_dssp CEEEECSCTTSSHHHH
T ss_pred CeEEEECcCCCCHHHH
Confidence 6799999999999974
No 484
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=22.29 E-value=31 Score=26.22 Aligned_cols=16 Identities=38% Similarity=0.405 Sum_probs=13.4
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+.+.+++|+|||..
T Consensus 65 e~~~i~G~NGsGKSTL 80 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSL 80 (290)
T ss_dssp CEEEEEESTTSSHHHH
T ss_pred CEEEEECCCCCcHHHH
Confidence 4567899999999974
No 485
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=22.29 E-value=28 Score=29.94 Aligned_cols=17 Identities=29% Similarity=0.435 Sum_probs=14.8
Q ss_pred CCcEEEEeecCCCcccc
Q psy11948 40 RKDIVGAAETGSGKTLA 56 (167)
Q Consensus 40 ~~d~i~~a~tgsGKt~~ 56 (167)
..++++.+++|+|||..
T Consensus 207 ~~~vlL~G~~GtGKT~l 223 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAI 223 (758)
T ss_dssp SCEEEEECCTTSSHHHH
T ss_pred CCCeEEEcCCCCCHHHH
Confidence 36899999999999974
No 486
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=22.29 E-value=23 Score=25.17 Aligned_cols=17 Identities=24% Similarity=-0.056 Sum_probs=12.6
Q ss_pred cEEEEeecCCCcccccc
Q psy11948 42 DIVGAAETGSGKTLAFG 58 (167)
Q Consensus 42 d~i~~a~tgsGKt~~~~ 58 (167)
=.+..++.|+|||...+
T Consensus 10 i~v~~G~mgsGKTT~ll 26 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELI 26 (191)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 35678888999997543
No 487
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=22.12 E-value=28 Score=26.76 Aligned_cols=15 Identities=33% Similarity=0.419 Sum_probs=12.3
Q ss_pred cEEEEeecCCCcccc
Q psy11948 42 DIVGAAETGSGKTLA 56 (167)
Q Consensus 42 d~i~~a~tgsGKt~~ 56 (167)
-+++.+++|+|||..
T Consensus 106 vi~ivG~~GsGKTTl 120 (306)
T 1vma_A 106 VIMVVGVNGTGKTTS 120 (306)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEEcCCCChHHHH
Confidence 366889999999974
No 488
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=21.95 E-value=30 Score=22.64 Aligned_cols=15 Identities=27% Similarity=0.277 Sum_probs=12.9
Q ss_pred CcEEEEeecCCCccc
Q psy11948 41 KDIVGAAETGSGKTL 55 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~ 55 (167)
..+++.+..|+|||.
T Consensus 4 ~~i~v~G~~~~GKss 18 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSS 18 (170)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred EEEEEECCCCCCHHH
Confidence 358899999999996
No 489
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=21.71 E-value=29 Score=23.95 Aligned_cols=14 Identities=29% Similarity=0.487 Sum_probs=12.3
Q ss_pred cEEEEeecCCCccc
Q psy11948 42 DIVGAAETGSGKTL 55 (167)
Q Consensus 42 d~i~~a~tgsGKt~ 55 (167)
.+++.++.|+|||.
T Consensus 7 kv~lvG~~g~GKST 20 (199)
T 2f9l_A 7 KVVLIGDSGVGKSN 20 (199)
T ss_dssp EEEEESSTTSSHHH
T ss_pred EEEEECcCCCCHHH
Confidence 47889999999996
No 490
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=21.54 E-value=30 Score=26.40 Aligned_cols=15 Identities=33% Similarity=0.271 Sum_probs=13.3
Q ss_pred CcEEEEeecCCCccc
Q psy11948 41 KDIVGAAETGSGKTL 55 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~ 55 (167)
.=+++.+++|+|||.
T Consensus 69 ~l~li~G~pG~GKTt 83 (315)
T 3bh0_A 69 NFVLIAARPSMGKTA 83 (315)
T ss_dssp CEEEEECCTTSSHHH
T ss_pred cEEEEEeCCCCCHHH
Confidence 568899999999996
No 491
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=21.50 E-value=29 Score=24.89 Aligned_cols=14 Identities=29% Similarity=0.268 Sum_probs=11.7
Q ss_pred cEEEEeecCCCccc
Q psy11948 42 DIVGAAETGSGKTL 55 (167)
Q Consensus 42 d~i~~a~tgsGKt~ 55 (167)
-+++.++.||||+.
T Consensus 2 ~Iil~GpPGsGKgT 15 (206)
T 3sr0_A 2 ILVFLGPPGAGKGT 15 (206)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 36788999999975
No 492
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=21.48 E-value=31 Score=22.45 Aligned_cols=15 Identities=20% Similarity=0.428 Sum_probs=13.0
Q ss_pred CcEEEEeecCCCccc
Q psy11948 41 KDIVGAAETGSGKTL 55 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~ 55 (167)
..+++.+..|+|||.
T Consensus 5 ~~i~v~G~~~~GKss 19 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSA 19 (168)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred EEEEEECCCCCCHHH
Confidence 468899999999996
No 493
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=21.35 E-value=29 Score=25.46 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=13.5
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-|++.+..|+|||..
T Consensus 25 ~~I~ieG~~GsGKST~ 40 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTF 40 (263)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4678899999999973
No 494
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=21.35 E-value=32 Score=22.35 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=13.0
Q ss_pred CcEEEEeecCCCccc
Q psy11948 41 KDIVGAAETGSGKTL 55 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~ 55 (167)
..+++.+.+|+|||.
T Consensus 4 ~~i~v~G~~~~GKSs 18 (167)
T 1kao_A 4 YKVVVLGSGGVGKSA 18 (167)
T ss_dssp EEEEEECCTTSSHHH
T ss_pred EEEEEECCCCCCHHH
Confidence 368899999999996
No 495
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=21.29 E-value=30 Score=25.12 Aligned_cols=16 Identities=38% Similarity=0.287 Sum_probs=13.8
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.-+++.++.|+|||..
T Consensus 27 ~~i~i~G~~GsGKsT~ 42 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTV 42 (229)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred eEEEEEcCCCCCHHHH
Confidence 6788999999999863
No 496
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=21.29 E-value=32 Score=22.50 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=12.9
Q ss_pred CcEEEEeecCCCccc
Q psy11948 41 KDIVGAAETGSGKTL 55 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~ 55 (167)
..+++.+.+|+|||.
T Consensus 4 ~ki~v~G~~~~GKss 18 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSA 18 (167)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 357899999999996
No 497
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=21.18 E-value=37 Score=22.69 Aligned_cols=15 Identities=33% Similarity=0.315 Sum_probs=13.5
Q ss_pred CcEEEEeecCCCccc
Q psy11948 41 KDIVGAAETGSGKTL 55 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~ 55 (167)
..+++.+..|+|||.
T Consensus 19 ~~i~v~G~~~~GKss 33 (183)
T 1moz_A 19 LRILILGLDGAGKTT 33 (183)
T ss_dssp EEEEEEEETTSSHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 579999999999996
No 498
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=21.10 E-value=33 Score=22.50 Aligned_cols=15 Identities=20% Similarity=0.211 Sum_probs=12.9
Q ss_pred CcEEEEeecCCCccc
Q psy11948 41 KDIVGAAETGSGKTL 55 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~ 55 (167)
..+++.+.+|+|||.
T Consensus 4 ~~i~v~G~~~~GKss 18 (172)
T 2erx_A 4 YRVAVFGAGGVGKSS 18 (172)
T ss_dssp EEEEEECCTTSSHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 358899999999996
No 499
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=20.97 E-value=29 Score=27.73 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=13.0
Q ss_pred CcEEEEeecCCCcccc
Q psy11948 41 KDIVGAAETGSGKTLA 56 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~~ 56 (167)
.=+++++..|||||..
T Consensus 259 ~lIil~G~pGSGKSTl 274 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTF 274 (416)
T ss_dssp CEEEEESCTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 3477899999999974
No 500
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=20.86 E-value=33 Score=24.72 Aligned_cols=15 Identities=13% Similarity=0.224 Sum_probs=12.8
Q ss_pred CcEEEEeecCCCccc
Q psy11948 41 KDIVGAAETGSGKTL 55 (167)
Q Consensus 41 ~d~i~~a~tgsGKt~ 55 (167)
+-+++.+..|+|||.
T Consensus 3 ~~i~~~G~~g~GKtt 17 (241)
T 2ocp_A 3 RRLSIEGNIAVGKST 17 (241)
T ss_dssp EEEEEEECTTSSHHH
T ss_pred eEEEEEcCCCCCHHH
Confidence 457889999999997
Done!