Your job contains 1 sequence.
>psy11948
MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP
ILTGIVNKLENPTEEDENDSARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDEN
DSGLEEEAEEVLEELEEESANTTEFVKKTRNKLYALILAPTRELAIQ
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy11948
(167 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0034496 - symbol:CG9143 species:7227 "Drosophila m... 215 9.6e-21 2
WB|WBGene00018890 - symbol:F55F8.2 species:6239 "Caenorha... 188 1.6e-16 2
MGI|MGI:1351337 - symbol:Ddx24 "DEAD (Asp-Glu-Ala-Asp) bo... 158 1.1e-13 2
RGD|727929 - symbol:Ddx24 "DEAD (Asp-Glu-Ala-Asp) box pol... 158 1.3e-13 2
GENEDB_PFALCIPARUM|PFB0860c - symbol:PFB0860c "RNA helica... 146 1.9e-13 2
UNIPROTKB|O96264 - symbol:PFB0860c "DEAD/DEAH box helicas... 146 1.9e-13 2
TAIR|locus:2086775 - symbol:AT3G16840 species:3702 "Arabi... 158 2.5e-13 2
UNIPROTKB|A6H7B6 - symbol:DDX24 "DDX24 protein" species:9... 158 2.7e-13 2
UNIPROTKB|G3V529 - symbol:DDX24 "ATP-dependent RNA helica... 157 3.1e-13 2
UNIPROTKB|Q9GZR7 - symbol:DDX24 "ATP-dependent RNA helica... 157 3.6e-13 2
DICTYBASE|DDB_G0281841 - symbol:ddx24 "DEAD/DEAH box heli... 185 3.8e-13 1
UNIPROTKB|E1BXX5 - symbol:DDX59 "Uncharacterized protein"... 147 4.1e-13 2
UNIPROTKB|F1SCG7 - symbol:LOC100620190 "Uncharacterized p... 155 5.7e-13 2
CGD|CAL0001091 - symbol:orf19.672 species:5476 "Candida a... 143 6.9e-13 2
UNIPROTKB|Q59W52 - symbol:PRP28 "Pre-mRNA-splicing ATP-de... 143 6.9e-13 2
UNIPROTKB|E2RIC4 - symbol:DDX24 "Uncharacterized protein"... 152 1.1e-12 2
POMBASE|SPCC63.11 - symbol:prp28 "U5 snRNP-associated pro... 146 1.6e-12 2
DICTYBASE|DDB_G0277857 - symbol:helB2 "putative U5 small ... 149 2.9e-12 2
POMBASE|SPBC4F6.07c - symbol:SPBC4F6.07c "ATP-dependent R... 150 3.0e-12 2
FB|FBgn0032690 - symbol:CG10333 species:7227 "Drosophila ... 145 3.6e-12 2
UNIPROTKB|Q5ZLB0 - symbol:DDX47 "Uncharacterized protein"... 134 3.8e-12 2
MGI|MGI:1915005 - symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) bo... 129 5.1e-12 2
UNIPROTKB|G3V727 - symbol:Ddx47 "Protein Ddx47" species:1... 129 5.1e-12 2
UNIPROTKB|I3L976 - symbol:DDX47 "Uncharacterized protein"... 129 5.1e-12 2
UNIPROTKB|Q29S22 - symbol:DDX47 "Probable ATP-dependent R... 129 5.2e-12 2
UNIPROTKB|E2RN03 - symbol:DDX47 "Uncharacterized protein"... 129 6.1e-12 2
TIGR_CMR|CPS_1726 - symbol:CPS_1726 "RNA helicase DeaD" s... 144 8.6e-12 2
TAIR|locus:2057640 - symbol:AT2G33730 species:3702 "Arabi... 142 9.0e-12 2
TAIR|locus:2173517 - symbol:AT5G60990 species:3702 "Arabi... 136 9.7e-12 2
UNIPROTKB|P96614 - symbol:cshA "DEAD-box ATP-dependent RN... 134 1.3e-11 2
FB|FBgn0032919 - symbol:CG9253 species:7227 "Drosophila m... 135 1.4e-11 2
ZFIN|ZDB-GENE-050522-359 - symbol:zgc:112350 "zgc:112350"... 135 1.4e-11 2
UNIPROTKB|Q9KMW4 - symbol:VC_A0204 "ATP-dependent RNA hel... 130 1.6e-11 2
TIGR_CMR|VC_A0204 - symbol:VC_A0204 "ATP-dependent RNA he... 130 1.6e-11 2
ASPGD|ASPL0000013201 - symbol:AN4233 species:162425 "Emer... 131 1.8e-11 2
TAIR|locus:2162022 - symbol:AT5G63120 species:3702 "Arabi... 135 2.2e-11 2
UNIPROTKB|D6RJA6 - symbol:DDX46 "Probable ATP-dependent R... 138 2.2e-11 2
UNIPROTKB|Q5L3G9 - symbol:cshA "DEAD-box ATP-dependent RN... 128 2.3e-11 2
UNIPROTKB|Q11039 - symbol:deaD "Cold-shock DEAD box prote... 136 2.4e-11 2
POMBASE|SPAC30D11.03 - symbol:ddx27 "ATP-dependent RNA he... 143 2.5e-11 2
WB|WBGene00017162 - symbol:ddx-23 species:6239 "Caenorhab... 135 3.0e-11 2
TIGR_CMR|CPS_2658 - symbol:CPS_2658 "ATP-dependent RNA he... 136 3.3e-11 2
TIGR_CMR|CPS_1125 - symbol:CPS_1125 "ATP-dependent RNA he... 126 3.8e-11 2
UNIPROTKB|E7EX41 - symbol:DDX55 "ATP-dependent RNA helica... 112 4.2e-11 2
UNIPROTKB|Q65N62 - symbol:cshA "DEAD-box ATP-dependent RN... 129 4.2e-11 2
GENEDB_PFALCIPARUM|PFE0925c - symbol:PFE0925c "snrnp prot... 134 4.3e-11 2
UNIPROTKB|Q8I0W7 - symbol:PFE0925c "Snrnp protein, putati... 134 4.3e-11 2
UNIPROTKB|Q81JK1 - symbol:BAS5307 "ATP-dependent RNA heli... 118 4.5e-11 2
TIGR_CMR|BA_5703 - symbol:BA_5703 "ATP-dependent RNA heli... 118 4.5e-11 2
UNIPROTKB|A4QYM6 - symbol:DRS1 "ATP-dependent RNA helicas... 137 4.7e-11 2
UNIPROTKB|H0Y8L8 - symbol:DDX41 "Probable ATP-dependent R... 120 4.9e-11 2
GENEDB_PFALCIPARUM|PF14_0429 - symbol:PF14_0429 "RNA heli... 125 5.0e-11 2
UNIPROTKB|Q8IL21 - symbol:PF14_0429 "RNA helicase, putati... 125 5.0e-11 2
POMBASE|SPAC1F7.02c - symbol:has1 "ATP-dependent RNA heli... 130 5.4e-11 2
POMBASE|SPAC823.08c - symbol:SPAC823.08c "ATP-dependent R... 129 5.9e-11 2
UNIPROTKB|Q48AV0 - symbol:CPS_0042 "ATP-dependent RNA hel... 127 6.9e-11 2
TIGR_CMR|CPS_0042 - symbol:CPS_0042 "ATP-dependent RNA he... 127 6.9e-11 2
ASPGD|ASPL0000051195 - symbol:AN1634 species:162425 "Emer... 128 7.6e-11 2
UNIPROTKB|O05855 - symbol:rhlE "PROBABLE ATP-DEPENDENT RN... 137 8.1e-11 2
CGD|CAL0006152 - symbol:DHH1 species:5476 "Candida albica... 112 8.6e-11 2
UNIPROTKB|Q5AAW3 - symbol:DHH1 "ATP-dependent RNA helicas... 112 8.6e-11 2
MGI|MGI:1915247 - symbol:Ddx59 "DEAD (Asp-Glu-Ala-Asp) bo... 128 1.1e-10 2
TIGR_CMR|CPS_1418 - symbol:CPS_1418 "ATP-dependent RNA he... 116 1.1e-10 2
TIGR_CMR|GSU_0914 - symbol:GSU_0914 "ATP-dependent RNA he... 124 1.1e-10 2
UNIPROTKB|E1BSC0 - symbol:DDX46 "Uncharacterized protein"... 140 1.1e-10 2
RGD|1359520 - symbol:Ddx59 "DEAD (Asp-Glu-Ala-Asp) box po... 127 1.2e-10 2
UNIPROTKB|Q66HG7 - symbol:Ddx59 "Probable ATP-dependent R... 127 1.2e-10 2
TIGR_CMR|SPO_1443 - symbol:SPO_1443 "ATP-dependent RNA he... 133 1.2e-10 2
ASPGD|ASPL0000044206 - symbol:AN1949 species:162425 "Emer... 129 1.3e-10 2
TIGR_CMR|SO_4034 - symbol:SO_4034 "ATP-dependent RNA heli... 129 1.4e-10 2
ASPGD|ASPL0000042587 - symbol:AN1750 species:162425 "Emer... 135 1.4e-10 2
ASPGD|ASPL0000062195 - symbol:AN10125 species:162425 "Eme... 139 1.6e-10 2
CGD|CAL0003050 - symbol:HAS1 species:5476 "Candida albica... 125 1.7e-10 2
UNIPROTKB|Q5AK59 - symbol:HAS1 "ATP-dependent RNA helicas... 125 1.7e-10 2
ASPGD|ASPL0000069536 - symbol:AN7424 species:162425 "Emer... 130 1.7e-10 2
UNIPROTKB|B7Z5N6 - symbol:DDX59 "cDNA FLJ56549, highly si... 125 1.7e-10 2
UNIPROTKB|E2R4Z9 - symbol:DDX59 "Uncharacterized protein"... 125 1.8e-10 2
UNIPROTKB|Q7L014 - symbol:DDX46 "Probable ATP-dependent R... 138 1.8e-10 2
UNIPROTKB|F1MX40 - symbol:DDX46 "Uncharacterized protein"... 138 1.8e-10 2
UNIPROTKB|F1PK90 - symbol:DDX46 "Uncharacterized protein"... 138 1.8e-10 2
UNIPROTKB|I3LR20 - symbol:DDX46 "Uncharacterized protein"... 138 1.8e-10 2
MGI|MGI:1920895 - symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) bo... 138 1.8e-10 2
RGD|708480 - symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box pol... 138 1.8e-10 2
UNIPROTKB|Q62780 - symbol:Ddx46 "Probable ATP-dependent R... 138 1.8e-10 2
TAIR|locus:2034481 - symbol:STRS1 "STRESS RESPONSE SUPPRE... 129 1.9e-10 2
UNIPROTKB|Q81QF0 - symbol:BAS2301 "ATP-dependent RNA heli... 122 1.9e-10 2
TIGR_CMR|BA_2475 - symbol:BA_2475 "ATP-dependent RNA heli... 122 1.9e-10 2
UNIPROTKB|P21507 - symbol:srmB "SrmB, DEAD-box RNA helica... 124 2.2e-10 2
UNIPROTKB|Q5T1V6 - symbol:DDX59 "Probable ATP-dependent R... 125 2.2e-10 2
UNIPROTKB|E2R4Y9 - symbol:DDX59 "Uncharacterized protein"... 125 2.3e-10 2
SGD|S000004266 - symbol:DBP9 "DEAD-box protein required f... 135 2.4e-10 2
CGD|CAL0000056 - symbol:orf19.7546 species:5476 "Candida ... 125 2.4e-10 2
UNIPROTKB|P25888 - symbol:rhlE "ATP-dependent RNA helicas... 120 2.5e-10 2
SGD|S000001107 - symbol:RRP3 "Protein involved in rRNA pr... 123 2.5e-10 2
SGD|S000004903 - symbol:HAS1 "ATP-dependent RNA helicase"... 125 2.6e-10 2
FB|FBgn0025140 - symbol:pit "pitchoune" species:7227 "Dro... 133 2.7e-10 2
UNIPROTKB|G3X7G8 - symbol:DDX59 "Uncharacterized protein"... 129 2.8e-10 2
ASPGD|ASPL0000006660 - symbol:AN5931 species:162425 "Emer... 124 2.8e-10 2
UNIPROTKB|Q73EU1 - symbol:cshA "DEAD-box ATP-dependent RN... 125 2.9e-10 2
UNIPROTKB|A0R8U6 - symbol:cshA "DEAD-box ATP-dependent RN... 125 2.9e-10 2
WARNING: Descriptions of 522 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0034496 [details] [associations]
symbol:CG9143 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:AE013599
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 KO:K14805 GeneTree:ENSGT00550000074847
OMA:DAYLYYI EMBL:BT010296 RefSeq:NP_611467.1 UniGene:Dm.22095
SMR:Q6NQY9 STRING:Q6NQY9 EnsemblMetazoa:FBtr0086304 GeneID:37296
KEGG:dme:Dmel_CG9143 UCSC:CG9143-RA FlyBase:FBgn0034496
InParanoid:Q6NQY9 OrthoDB:EOG4VQ84N GenomeRNAi:37296 NextBio:802980
Uniprot:Q6NQY9
Length = 813
Score = 215 (80.7 bits), Expect = 9.6e-21, Sum P(2) = 9.6e-21
Identities = 39/66 (59%), Positives = 55/66 (83%)
Query: 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
M+ W +P +I+RAL ++GFKTPT+IQ++ +P+A+ +KDI+GAAETGSGKTLAFGIP
Sbjct: 214 MSAWNGLGVPASILRALGEQGFKTPTQIQALTLPAAIHGKKDILGAAETGSGKTLAFGIP 273
Query: 61 ILTGIV 66
+L GI+
Sbjct: 274 MLAGIM 279
Score = 115 (45.5 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 22/27 (81%), Positives = 26/27 (96%)
Query: 82 RKDIVGAAETGSGKTLAFGIPILTGIV 108
+KDI+GAAETGSGKTLAFGIP+L GI+
Sbjct: 253 KKDILGAAETGSGKTLAFGIPMLAGIM 279
Score = 66 (28.3 bits), Expect = 9.6e-21, Sum P(2) = 9.6e-21
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 140 ANTTEFVKKTRNKLYALILAPTRELAIQ 167
++ E ++ + LY L+L PTRELA+Q
Sbjct: 328 SDAEEQAQRVQTPLYGLVLTPTRELAVQ 355
>WB|WBGene00018890 [details] [associations]
symbol:F55F8.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040002 "collagen and cuticulin-based cuticle
development" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0007276 "gamete generation"
evidence=IMP] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003676 GO:GO:0040035 GO:GO:0040002 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
KO:K14805 HOGENOM:HOG000290702 GeneTree:ENSGT00550000074847
OMA:VEEGYFA EMBL:FO081477 PIR:T29584 RefSeq:NP_491652.1
ProteinModelPortal:P91340 SMR:P91340 STRING:P91340 PaxDb:P91340
PRIDE:P91340 EnsemblMetazoa:F55F8.2a GeneID:172223
KEGG:cel:CELE_F55F8.2 UCSC:F55F8.2a CTD:172223 WormBase:F55F8.2a
InParanoid:P91340 NextBio:874573 ArrayExpress:P91340 Uniprot:P91340
Length = 746
Score = 188 (71.2 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 36/83 (43%), Positives = 59/83 (71%)
Query: 1 MAEWVKFN-IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 59
++ W +F +P ++ A+ Q GF PT+IQS V+P+A+ R+D++GAAETGSGKTLAFGI
Sbjct: 153 ISAWKQFYFLPNEVLEAIEQMGFSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTLAFGI 212
Query: 60 PILTGIVNKLENPTEEDENDSAR 82
P++ ++ ++ ++E E+ R
Sbjct: 213 PLVARLLESSDD-SQETESTEVR 234
Score = 102 (41.0 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 18/32 (56%), Positives = 27/32 (84%)
Query: 82 RKDIVGAAETGSGKTLAFGIPILTGIVNKLEN 113
R+D++GAAETGSGKTLAFGIP++ ++ ++
Sbjct: 193 RQDVLGAAETGSGKTLAFGIPLVARLLESSDD 224
Score = 52 (23.4 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 11/13 (84%), Positives = 12/13 (92%)
Query: 155 ALILAPTRELAIQ 167
ALI+APTREL IQ
Sbjct: 238 ALIVAPTRELVIQ 250
>MGI|MGI:1351337 [details] [associations]
symbol:Ddx24 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 24"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1351337
GO:GO:0005524 GO:GO:0003723 EMBL:CH466549 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14805 CTD:57062
HOGENOM:HOG000290702 HOVERGEN:HBG104200 EMBL:AF214732 EMBL:BC055048
EMBL:BC055317 EMBL:U46690 IPI:IPI00380228 RefSeq:NP_001152974.1
RefSeq:NP_065240.2 UniGene:Mm.3935 UniGene:Mm.475067
ProteinModelPortal:Q9ESV0 SMR:Q9ESV0 PhosphoSite:Q9ESV0
PaxDb:Q9ESV0 PRIDE:Q9ESV0 Ensembl:ENSMUST00000044923 GeneID:27225
KEGG:mmu:27225 GeneTree:ENSGT00550000074847 InParanoid:Q7TM97
OrthoDB:EOG45TCMP NextBio:305144 Bgee:Q9ESV0 CleanEx:MM_DDX24
Genevestigator:Q9ESV0 GermOnline:ENSMUSG00000041645 Uniprot:Q9ESV0
Length = 857
Score = 158 (60.7 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 31/74 (41%), Positives = 50/74 (67%)
Query: 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
++ W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTLAF IP
Sbjct: 192 VSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIP 251
Query: 61 ILTGIV--NKLENP 72
++ ++ +K++ P
Sbjct: 252 MIHSVLQWHKMKAP 265
Score = 94 (38.1 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 19/33 (57%), Positives = 27/33 (81%)
Query: 84 DIVGAAETGSGKTLAFGIPILTGIV--NKLENP 114
DI+GAAETGSGKTLAF IP++ ++ +K++ P
Sbjct: 233 DILGAAETGSGKTLAFAIPMIHSVLQWHKMKAP 265
Score = 57 (25.1 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 150 RNKLYALILAPTRELAIQ 167
R L L+L PTRELAIQ
Sbjct: 385 RRPLLGLVLTPTRELAIQ 402
>RGD|727929 [details] [associations]
symbol:Ddx24 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 24"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:727929 GO:GO:0005524
GO:GO:0005737 GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CH473982 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14805
CTD:57062 HOGENOM:HOG000290702 HOVERGEN:HBG104200 OMA:DQQEERR
GeneTree:ENSGT00550000074847 OrthoDB:EOG45TCMP EMBL:BC097262
EMBL:AY341876 IPI:IPI00200634 RefSeq:NP_954550.1 UniGene:Rn.100166
Ensembl:ENSRNOT00000012256 GeneID:373065 KEGG:rno:373065
UCSC:RGD:727929 InParanoid:Q6VEU8 NextBio:692388
Genevestigator:Q6VEU8 Uniprot:Q6VEU8
Length = 851
Score = 158 (60.7 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 31/74 (41%), Positives = 50/74 (67%)
Query: 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
++ W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTLAF IP
Sbjct: 191 VSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIP 250
Query: 61 ILTGIV--NKLENP 72
++ ++ +K++ P
Sbjct: 251 MIHSVLQWHKMKAP 264
Score = 94 (38.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 19/33 (57%), Positives = 27/33 (81%)
Query: 84 DIVGAAETGSGKTLAFGIPILTGIV--NKLENP 114
DI+GAAETGSGKTLAF IP++ ++ +K++ P
Sbjct: 232 DILGAAETGSGKTLAFAIPMIHSVLQWHKMKAP 264
Score = 56 (24.8 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 150 RNKLYALILAPTRELAIQ 167
R L L+L PTRELA+Q
Sbjct: 379 RRPLLGLVLTPTRELAVQ 396
>GENEDB_PFALCIPARUM|PFB0860c [details] [associations]
symbol:PFB0860c "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AE001362
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802 HSSP:P10081
KO:K14777 PIR:C71604 RefSeq:XP_001349688.1
ProteinModelPortal:O96264 EnsemblProtists:PFB0860c:mRNA
GeneID:812770 KEGG:pfa:PFB0860c EuPathDB:PlasmoDB:PF3D7_0218400
OMA:KHRAKRV ProtClustDB:CLSZ2432676 Uniprot:O96264
Length = 562
Score = 146 (56.5 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 32/62 (51%), Positives = 44/62 (70%)
Query: 8 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI-V 66
NI E I+ ++ + G+K PT+IQ ++P A L +KDI+G +ETGSGKT F IPIL + V
Sbjct: 162 NICEEILESIKELGWKKPTEIQREILPHAFL-KKDIIGLSETGSGKTACFIIPILQDLKV 220
Query: 67 NK 68
NK
Sbjct: 221 NK 222
Score = 62 (26.9 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 146 VKKTRNKLYALILAPTRELAIQ 167
+K + YAL+++PTREL IQ
Sbjct: 218 LKVNKQSFYALVISPTRELCIQ 239
>UNIPROTKB|O96264 [details] [associations]
symbol:PFB0860c "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AE001362 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 HSSP:P10081 KO:K14777 PIR:C71604
RefSeq:XP_001349688.1 ProteinModelPortal:O96264
EnsemblProtists:PFB0860c:mRNA GeneID:812770 KEGG:pfa:PFB0860c
EuPathDB:PlasmoDB:PF3D7_0218400 OMA:KHRAKRV ProtClustDB:CLSZ2432676
Uniprot:O96264
Length = 562
Score = 146 (56.5 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 32/62 (51%), Positives = 44/62 (70%)
Query: 8 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI-V 66
NI E I+ ++ + G+K PT+IQ ++P A L +KDI+G +ETGSGKT F IPIL + V
Sbjct: 162 NICEEILESIKELGWKKPTEIQREILPHAFL-KKDIIGLSETGSGKTACFIIPILQDLKV 220
Query: 67 NK 68
NK
Sbjct: 221 NK 222
Score = 62 (26.9 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 146 VKKTRNKLYALILAPTRELAIQ 167
+K + YAL+++PTREL IQ
Sbjct: 218 LKVNKQSFYALVISPTRELCIQ 239
>TAIR|locus:2086775 [details] [associations]
symbol:AT3G16840 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AB028608 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14805 HOGENOM:HOG000290702 EMBL:AK318706
EMBL:AY045669 EMBL:AY054475 EMBL:AJ010465 IPI:IPI00535611
IPI:IPI01019866 PIR:T51744 RefSeq:NP_188307.3 UniGene:At.5723
ProteinModelPortal:Q93Y39 SMR:Q93Y39 PaxDb:Q93Y39 PRIDE:Q93Y39
GeneID:820937 KEGG:ath:AT3G16840 GeneFarm:929 TAIR:At3g16840
InParanoid:Q93Y39 OMA:DAYLYYI Genevestigator:Q93Y39
GermOnline:AT3G16840 Uniprot:Q93Y39
Length = 826
Score = 158 (60.7 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 30/67 (44%), Positives = 44/67 (65%)
Query: 4 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63
W + +++++Y+ FK PTKIQ A KD++GAAETGSGKTLAFG+PIL
Sbjct: 192 WSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQ 251
Query: 64 GIVNKLE 70
++++ E
Sbjct: 252 RLLDERE 258
Score = 109 (43.4 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 20/30 (66%), Positives = 27/30 (90%)
Query: 83 KDIVGAAETGSGKTLAFGIPILTGIVNKLE 112
KD++GAAETGSGKTLAFG+PIL ++++ E
Sbjct: 229 KDVIGAAETGSGKTLAFGLPILQRLLDERE 258
Score = 53 (23.7 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 153 LYALILAPTRELAIQ 167
L ALI+ PTRELA+Q
Sbjct: 280 LRALIITPTRELALQ 294
>UNIPROTKB|A6H7B6 [details] [associations]
symbol:DDX24 "DDX24 protein" species:9913 "Bos taurus"
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14805 CTD:57062
HOGENOM:HOG000290702 HOVERGEN:HBG104200 OMA:DQQEERR
GeneTree:ENSGT00550000074847 OrthoDB:EOG45TCMP EMBL:DAAA02053048
EMBL:BC146184 IPI:IPI00687716 RefSeq:NP_001092515.1 UniGene:Bt.9433
Ensembl:ENSBTAT00000004441 GeneID:529613 KEGG:bta:529613
InParanoid:A6H7B6 NextBio:20875064 Uniprot:A6H7B6
Length = 852
Score = 158 (60.7 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 33/83 (39%), Positives = 50/83 (60%)
Query: 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
++ W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTLAF IP
Sbjct: 190 VSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIP 249
Query: 61 ILTGIVN--KLENPTEEDENDSA 81
++ ++ + PT N A
Sbjct: 250 MIDAVLRWQVKKKPTPAISNTGA 272
Score = 92 (37.4 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 17/25 (68%), Positives = 22/25 (88%)
Query: 84 DIVGAAETGSGKTLAFGIPILTGIV 108
DI+GAAETGSGKTLAF IP++ ++
Sbjct: 231 DILGAAETGSGKTLAFAIPMIDAVL 255
Score = 53 (23.7 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 150 RNKLYALILAPTRELAIQ 167
+ L L+L PTRELA+Q
Sbjct: 380 KRPLLGLVLTPTRELAVQ 397
>UNIPROTKB|G3V529 [details] [associations]
symbol:DDX24 "ATP-dependent RNA helicase DDX24"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AL079302 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HGNC:HGNC:13266 ChiTaRS:DDX24 ProteinModelPortal:G3V529 SMR:G3V529
Ensembl:ENST00000555054 ArrayExpress:G3V529 Bgee:G3V529
Uniprot:G3V529
Length = 816
Score = 157 (60.3 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 36/103 (34%), Positives = 54/103 (52%)
Query: 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
++ W +P ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTLAF IP
Sbjct: 148 VSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIP 207
Query: 61 ILTGIV-----NKLENPTEEDENDSARKDIVGAAETGSGKTLA 98
++ ++ N P+ + + GA GK A
Sbjct: 208 MIHAVLQWQKRNAAPPPSNTEAPPGETRTEAGAETRSPGKAEA 250
Score = 91 (37.1 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 17/25 (68%), Positives = 22/25 (88%)
Query: 84 DIVGAAETGSGKTLAFGIPILTGIV 108
DI+GAAETGSGKTLAF IP++ ++
Sbjct: 189 DILGAAETGSGKTLAFAIPMIHAVL 213
Score = 53 (23.7 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 150 RNKLYALILAPTRELAIQ 167
+ L L+L PTRELA+Q
Sbjct: 342 KRPLLGLVLTPTRELAVQ 359
>UNIPROTKB|Q9GZR7 [details] [associations]
symbol:DDX24 "ATP-dependent RNA helicase DDX24"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016070 "RNA metabolic
process" evidence=NAS] [GO:0003724 "RNA helicase activity"
evidence=NAS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0005730 GO:GO:0003723 GO:GO:0016070 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14805 EMBL:AF214731
EMBL:AL136886 EMBL:AK025162 EMBL:BC008847 EMBL:BC009406
IPI:IPI00006987 RefSeq:NP_065147.1 UniGene:Hs.510328
ProteinModelPortal:Q9GZR7 SMR:Q9GZR7 DIP:DIP-47301N IntAct:Q9GZR7
MINT:MINT-1378437 STRING:Q9GZR7 PhosphoSite:Q9GZR7 DMDM:18202929
SWISS-2DPAGE:Q9GZR7 PaxDb:Q9GZR7 PeptideAtlas:Q9GZR7 PRIDE:Q9GZR7
DNASU:57062 Ensembl:ENST00000330836 GeneID:57062 KEGG:hsa:57062
UCSC:uc001ycj.3 CTD:57062 GeneCards:GC14M094517 HGNC:HGNC:13266
HPA:HPA002554 MIM:606181 neXtProt:NX_Q9GZR7 PharmGKB:PA27211
HOGENOM:HOG000290702 HOVERGEN:HBG104200 InParanoid:Q9GZR7
OMA:DQQEERR PhylomeDB:Q9GZR7 ChiTaRS:DDX24 GenomeRNAi:57062
NextBio:62861 ArrayExpress:Q9GZR7 Bgee:Q9GZR7 CleanEx:HS_DDX24
Genevestigator:Q9GZR7 GermOnline:ENSG00000089737 Uniprot:Q9GZR7
Length = 859
Score = 157 (60.3 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 36/103 (34%), Positives = 54/103 (52%)
Query: 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
++ W +P ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTLAF IP
Sbjct: 191 VSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIP 250
Query: 61 ILTGIV-----NKLENPTEEDENDSARKDIVGAAETGSGKTLA 98
++ ++ N P+ + + GA GK A
Sbjct: 251 MIHAVLQWQKRNAAPPPSNTEAPPGETRTEAGAETRSPGKAEA 293
Score = 91 (37.1 bits), Expect = 0.00093, Sum P(2) = 0.00093
Identities = 17/25 (68%), Positives = 22/25 (88%)
Query: 84 DIVGAAETGSGKTLAFGIPILTGIV 108
DI+GAAETGSGKTLAF IP++ ++
Sbjct: 232 DILGAAETGSGKTLAFAIPMIHAVL 256
Score = 53 (23.7 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 150 RNKLYALILAPTRELAIQ 167
+ L L+L PTRELA+Q
Sbjct: 385 KRPLLGLVLTPTRELAVQ 402
>DICTYBASE|DDB_G0281841 [details] [associations]
symbol:ddx24 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281841 GO:GO:0005524 GenomeReviews:CM000152_GR
GO:GO:0003723 EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_640452.1 ProteinModelPortal:Q54TD7
EnsemblProtists:DDB0234200 GeneID:8623265 KEGG:ddi:DDB_G0281841
KO:K14805 OMA:NIDHVAH Uniprot:Q54TD7
Length = 940
Score = 185 (70.2 bits), Expect = 3.8e-13, P = 3.8e-13
Identities = 36/83 (43%), Positives = 55/83 (66%)
Query: 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
M+EW +N+ I++ L GF PT+IQS V+P A+ + D++GAA+TGSGKTLAFGIP
Sbjct: 293 MSEWNSYNLDPLILKGLRSLGFSKPTEIQSSVIPVAVSSGYDVIGAAQTGSGKTLAFGIP 352
Query: 61 ILTGIVNKLENPTEEDENDSARK 83
++ I+ L + EN + ++
Sbjct: 353 MVQRILQHLRKHGQNVENKANKQ 375
Score = 123 (48.4 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 32/90 (35%), Positives = 43/90 (47%)
Query: 80 SARKDIVGAAETGSGKTLAFGIPILTGIVNKLEN--PTXXXXXXXXXXXXXXXXXXXXXX 137
S+ D++GAA+TGSGKTLAFGIP++ I+ L
Sbjct: 330 SSGYDVIGAAQTGSGKTLAFGIPMVQRILQHLRKHGQNVENKANKQQNDNDDENEDVEEE 389
Query: 138 XSANTTEFVKKTRNKLYALILAPTRELAIQ 167
E K KL++L++ PTRELAIQ
Sbjct: 390 EEEEEEEGRSKEYRKLFSLVICPTRELAIQ 419
>UNIPROTKB|E1BXX5 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:AADN02033796 IPI:IPI00587299
RefSeq:XP_422189.2 ProteinModelPortal:E1BXX5
Ensembl:ENSGALT00000003389 GeneID:424346 KEGG:gga:424346
NextBio:20826688 Uniprot:E1BXX5
Length = 625
Score = 147 (56.8 bits), Expect = 4.1e-13, Sum P(2) = 4.1e-13
Identities = 30/71 (42%), Positives = 45/71 (63%)
Query: 3 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
E+ PET+ L G++ PT IQ ++P LL R DIV +A+TGSGKT AF +P++
Sbjct: 210 EFEHCGFPETLNSNLKNSGYEVPTPIQMQMIPVGLLGR-DIVASADTGSGKTAAFLLPVI 268
Query: 63 TGIVNKLENPT 73
++N+ E P+
Sbjct: 269 MKVLNETETPS 279
Score = 93 (37.8 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 16/33 (48%), Positives = 26/33 (78%)
Query: 83 KDIVGAAETGSGKTLAFGIPILTGIVNKLENPT 115
+DIV +A+TGSGKT AF +P++ ++N+ E P+
Sbjct: 247 RDIVASADTGSGKTAAFLLPVIMKVLNETETPS 279
Score = 59 (25.8 bits), Expect = 4.1e-13, Sum P(2) = 4.1e-13
Identities = 13/13 (100%), Positives = 13/13 (100%)
Query: 155 ALILAPTRELAIQ 167
ALILAPTRELAIQ
Sbjct: 280 ALILAPTRELAIQ 292
>UNIPROTKB|F1SCG7 [details] [associations]
symbol:LOC100620190 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14805
CTD:57062 OMA:DQQEERR GeneTree:ENSGT00550000074847 EMBL:CT990641
RefSeq:XP_003356831.1 UniGene:Ssc.51900 UniGene:Ssc.99043
Ensembl:ENSSSCT00000002742 GeneID:100157901 KEGG:ssc:100157901
Uniprot:F1SCG7
Length = 856
Score = 155 (59.6 bits), Expect = 5.7e-13, Sum P(2) = 5.7e-13
Identities = 29/66 (43%), Positives = 45/66 (68%)
Query: 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
++ W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTLAF IP
Sbjct: 190 VSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIP 249
Query: 61 ILTGIV 66
++ ++
Sbjct: 250 MIHAVL 255
Score = 91 (37.1 bits), Expect = 0.00093, Sum P(2) = 0.00093
Identities = 17/25 (68%), Positives = 22/25 (88%)
Query: 84 DIVGAAETGSGKTLAFGIPILTGIV 108
DI+GAAETGSGKTLAF IP++ ++
Sbjct: 231 DILGAAETGSGKTLAFAIPMIHAVL 255
Score = 53 (23.7 bits), Expect = 5.7e-13, Sum P(2) = 5.7e-13
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 150 RNKLYALILAPTRELAIQ 167
+ L L+L PTRELA+Q
Sbjct: 382 KRPLLGLVLTPTRELAVQ 399
>CGD|CAL0001091 [details] [associations]
symbol:orf19.672 species:5476 "Candida albicans" [GO:0005682
"U5 snRNP" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0006397
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116 RefSeq:XP_713805.1
RefSeq:XP_713845.1 ProteinModelPortal:Q59W52 GeneID:3644491
GeneID:3644552 KEGG:cal:CaO19.672 KEGG:cal:CaO19.8289
Uniprot:Q59W52
Length = 581
Score = 143 (55.4 bits), Expect = 6.9e-13, Sum P(2) = 6.9e-13
Identities = 30/68 (44%), Positives = 46/68 (67%)
Query: 4 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63
W + +I + ++ + Q G++ PT +Q +P AL ++D+VG AETGSGKTLAF IP+L
Sbjct: 170 WNEGSINDKLVSIISQLGYEEPTSVQRASIPLAL-KKRDVVGVAETGSGKTLAFLIPVLN 228
Query: 64 GIVNKLEN 71
I++ EN
Sbjct: 229 YILSIDEN 236
Score = 99 (39.9 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 62 LTGIVNKL--ENPTEEDENDSA----RKDIVGAAETGSGKTLAFGIPILTGIVNKLEN 113
L I+++L E PT ++D+VG AETGSGKTLAF IP+L I++ EN
Sbjct: 179 LVSIISQLGYEEPTSVQRASIPLALKKRDVVGVAETGSGKTLAFLIPVLNYILSIDEN 236
Score = 60 (26.2 bits), Expect = 6.9e-13, Sum P(2) = 6.9e-13
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 147 KKTRNKLYALILAPTRELAIQ 167
+K N+ LILAPTRELA+Q
Sbjct: 241 EKISNEPVGLILAPTRELALQ 261
>UNIPROTKB|Q59W52 [details] [associations]
symbol:PRP28 "Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28" species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116
RefSeq:XP_713805.1 RefSeq:XP_713845.1 ProteinModelPortal:Q59W52
GeneID:3644491 GeneID:3644552 KEGG:cal:CaO19.672
KEGG:cal:CaO19.8289 Uniprot:Q59W52
Length = 581
Score = 143 (55.4 bits), Expect = 6.9e-13, Sum P(2) = 6.9e-13
Identities = 30/68 (44%), Positives = 46/68 (67%)
Query: 4 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63
W + +I + ++ + Q G++ PT +Q +P AL ++D+VG AETGSGKTLAF IP+L
Sbjct: 170 WNEGSINDKLVSIISQLGYEEPTSVQRASIPLAL-KKRDVVGVAETGSGKTLAFLIPVLN 228
Query: 64 GIVNKLEN 71
I++ EN
Sbjct: 229 YILSIDEN 236
Score = 99 (39.9 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 62 LTGIVNKL--ENPTEEDENDSA----RKDIVGAAETGSGKTLAFGIPILTGIVNKLEN 113
L I+++L E PT ++D+VG AETGSGKTLAF IP+L I++ EN
Sbjct: 179 LVSIISQLGYEEPTSVQRASIPLALKKRDVVGVAETGSGKTLAFLIPVLNYILSIDEN 236
Score = 60 (26.2 bits), Expect = 6.9e-13, Sum P(2) = 6.9e-13
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 147 KKTRNKLYALILAPTRELAIQ 167
+K N+ LILAPTRELA+Q
Sbjct: 241 EKISNEPVGLILAPTRELALQ 261
>UNIPROTKB|E2RIC4 [details] [associations]
symbol:DDX24 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 OMA:DQQEERR
GeneTree:ENSGT00550000074847 EMBL:AAEX03005950
Ensembl:ENSCAFT00000027950 Uniprot:E2RIC4
Length = 818
Score = 152 (58.6 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 29/59 (49%), Positives = 41/59 (69%)
Query: 4 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
W +P+ ++RAL GF PT IQ++ + A+ + DI+GAAETGSGKTLAF IP++
Sbjct: 192 WKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIPMI 250
Score = 53 (23.7 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 150 RNKLYALILAPTRELAIQ 167
+ L L+L PTRELA+Q
Sbjct: 344 KRPLLGLVLTPTRELAVQ 361
>POMBASE|SPCC63.11 [details] [associations]
symbol:prp28 "U5 snRNP-associated protein Prp28
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC63.11
GO:GO:0005524 GO:GO:0005737 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0000354 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE OrthoDB:EOG4KPXK0 PIR:T41512 RefSeq:NP_587984.1
ProteinModelPortal:Q9Y7T7 STRING:Q9Y7T7 EnsemblFungi:SPCC63.11.1
GeneID:2538728 KEGG:spo:SPCC63.11 NextBio:20799913 Uniprot:Q9Y7T7
Length = 662
Score = 146 (56.5 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 31/76 (40%), Positives = 47/76 (61%)
Query: 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
+ W + +P +++ L + +K P+ IQ +P LL RKD++G AETGSGKT AF IP
Sbjct: 248 LRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIP-VLLQRKDLIGIAETGSGKTAAFIIP 306
Query: 61 ILTGIVNKLENPTEED 76
++ I +KL TE +
Sbjct: 307 LIIAI-SKLPPLTESN 321
Score = 90 (36.7 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 19/30 (63%), Positives = 24/30 (80%)
Query: 82 RKDIVGAAETGSGKTLAFGIPILTGIVNKL 111
RKD++G AETGSGKT AF IP++ I +KL
Sbjct: 286 RKDLIGIAETGSGKTAAFIIPLIIAI-SKL 314
Score = 55 (24.4 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 11/14 (78%), Positives = 13/14 (92%)
Query: 154 YALILAPTRELAIQ 167
YA++LAPTRELA Q
Sbjct: 327 YAVVLAPTRELAQQ 340
>DICTYBASE|DDB_G0277857 [details] [associations]
symbol:helB2 "putative U5 small nuclear
ribonucleoprotein" species:44689 "Dictyostelium discoideum"
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0277857 GO:GO:0005524 GO:GO:0005737
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0006397
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 GO:GO:0000375 HSSP:P09052 EMBL:X81824
RefSeq:XP_642321.1 ProteinModelPortal:Q54Y81 STRING:Q54Y81
EnsemblProtists:DDB0219950 GeneID:8621527 KEGG:ddi:DDB_G0277857
OMA:DRYRDND Uniprot:Q54Y81
Length = 834
Score = 149 (57.5 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 33/76 (43%), Positives = 48/76 (63%)
Query: 4 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63
W + N+P I+ A+ Q G++ P+ IQ +P +L R DI+G AETGSGKT AF IP+L
Sbjct: 415 WQESNLPREILEAIRQLGYEKPSPIQMQSIPISLTGR-DILGIAETGSGKTCAFVIPMLI 473
Query: 64 GIVNKLENPTEEDEND 79
++K T++ E D
Sbjct: 474 -YISKQPRLTKDTEAD 488
Score = 52 (23.4 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 154 YALILAPTRELAIQ 167
YAL++APTREL Q
Sbjct: 491 YALVMAPTRELVQQ 504
>POMBASE|SPBC4F6.07c [details] [associations]
symbol:SPBC4F6.07c "ATP-dependent RNA helicase Mak5
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS;IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBC4F6.07c
GO:GO:0005524 GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14805 HOGENOM:HOG000290702
OMA:VEEGYFA OrthoDB:EOG44J5S7 PIR:T40504 RefSeq:NP_596107.1
ProteinModelPortal:O74393 STRING:O74393 EnsemblFungi:SPBC4F6.07c.1
GeneID:2540874 KEGG:spo:SPBC4F6.07c NextBio:20801990 Uniprot:O74393
Length = 648
Score = 150 (57.9 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 30/62 (48%), Positives = 43/62 (69%)
Query: 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
++ W F++ ++ +L + GF P IQS+V+P A + DI+G A+TGSGKTLAFGIP
Sbjct: 121 VSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGF-DIIGKADTGSGKTLAFGIP 179
Query: 61 IL 62
IL
Sbjct: 180 IL 181
Score = 94 (38.1 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 18/21 (85%), Positives = 20/21 (95%)
Query: 84 DIVGAAETGSGKTLAFGIPIL 104
DI+G A+TGSGKTLAFGIPIL
Sbjct: 161 DIIGKADTGSGKTLAFGIPIL 181
Score = 48 (22.0 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 155 ALILAPTRELAIQ 167
AL++APTRELA Q
Sbjct: 195 ALVVAPTRELAHQ 207
Score = 35 (17.4 bits), Expect = 6.6e-11, Sum P(2) = 6.6e-11
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 61 ILTGIVNKLENPTEEDENDSA-RKDIVGAAE 90
+ +G+VN E E+ +D+ D + A E
Sbjct: 611 LTSGLVNMAEKLANEEVHDNIIGMDSISALE 641
Score = 34 (17.0 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 56 AFGIPILTGIVNKLENPTEEDENDSARKDI 85
+ G + + N+ EEDE++S D+
Sbjct: 92 SLGSKVTSKNYNEFSTLEEEDEHNSHGVDV 121
>FB|FBgn0032690 [details] [associations]
symbol:CG10333 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0005682 "U5
snRNP" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014134
GO:GO:0022008 GO:GO:0005682 GO:GO:0003676 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
OMA:PIRNWKE FlyBase:FBgn0032690 EMBL:BT021222 RefSeq:NP_609888.2
UniGene:Dm.456 SMR:Q9VJ74 STRING:Q9VJ74 EnsemblMetazoa:FBtr0081072
GeneID:35112 KEGG:dme:Dmel_CG10333 UCSC:CG10333-RA
InParanoid:Q9VJ74 GenomeRNAi:35112 NextBio:791924 Uniprot:Q9VJ74
Length = 822
Score = 145 (56.1 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 35/80 (43%), Positives = 48/80 (60%)
Query: 4 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63
W + P+ II + + G+K PT IQ +P L R DI+G AETGSGKTLAF IP+L+
Sbjct: 396 WNESGFPKEIIDIIDKVGYKEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTLAFLIPLLS 454
Query: 64 GIVN--KLENPTEEDENDSA 81
I + K+E + D+ A
Sbjct: 455 WIQSLPKIERLEDVDQGPYA 474
Score = 91 (37.1 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 18/25 (72%), Positives = 22/25 (88%)
Query: 83 KDIVGAAETGSGKTLAFGIPILTGI 107
+DI+G AETGSGKTLAF IP+L+ I
Sbjct: 432 RDIIGVAETGSGKTLAFLIPLLSWI 456
Score = 55 (24.4 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 11/14 (78%), Positives = 13/14 (92%)
Query: 154 YALILAPTRELAIQ 167
YA+I+APTRELA Q
Sbjct: 473 YAIIMAPTRELAQQ 486
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 134 (52.2 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 29/59 (49%), Positives = 39/59 (66%)
Query: 9 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67
+ + + A Q G+K PTKIQ +P AL R DI+G AETGSGKT AF +PIL +++
Sbjct: 32 VTDVLCEACDQLGWKVPTKIQVEAIPVALQGR-DIIGLAETGSGKTGAFALPILQALLD 89
Score = 86 (35.3 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 83 KDIVGAAETGSGKTLAFGIPILTGIVN 109
+DI+G AETGSGKT AF +PIL +++
Sbjct: 63 RDIIGLAETGSGKTGAFALPILQALLD 89
Score = 59 (25.8 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 11/16 (68%), Positives = 14/16 (87%)
Query: 152 KLYALILAPTRELAIQ 167
+L+AL+L PTRELA Q
Sbjct: 93 RLFALVLTPTRELAFQ 108
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 129 (50.5 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 31/64 (48%), Positives = 39/64 (60%)
Query: 9 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 68
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 31 VTDVLCEACDQLGWAKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL--- 86
Query: 69 LENP 72
LE P
Sbjct: 87 LETP 90
Score = 88 (36.0 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 83 KDIVGAAETGSGKTLAFGIPILTGIVNKLENP 114
+DI+G AETGSGKT AF +PIL + LE P
Sbjct: 62 RDIIGLAETGSGKTGAFALPILNAL---LETP 90
Score = 63 (27.2 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 148 KTRNKLYALILAPTRELAIQ 167
+T +L+AL+L PTRELA Q
Sbjct: 88 ETPQRLFALVLTPTRELAFQ 107
>UNIPROTKB|G3V727 [details] [associations]
symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
Uniprot:G3V727
Length = 455
Score = 129 (50.5 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 31/64 (48%), Positives = 39/64 (60%)
Query: 9 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 68
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 31 VTDVLCEACDQLGWAKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL--- 86
Query: 69 LENP 72
LE P
Sbjct: 87 LETP 90
Score = 88 (36.0 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 83 KDIVGAAETGSGKTLAFGIPILTGIVNKLENP 114
+DI+G AETGSGKT AF +PIL + LE P
Sbjct: 62 RDIIGLAETGSGKTGAFALPILNAL---LETP 90
Score = 63 (27.2 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 148 KTRNKLYALILAPTRELAIQ 167
+T +L+AL+L PTRELA Q
Sbjct: 88 ETPQRLFALVLTPTRELAFQ 107
>UNIPROTKB|I3L976 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF Ensembl:ENSSSCT00000025539 Uniprot:I3L976
Length = 456
Score = 129 (50.5 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 31/64 (48%), Positives = 39/64 (60%)
Query: 9 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 68
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 30 VTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL--- 85
Query: 69 LENP 72
LE P
Sbjct: 86 LETP 89
Score = 88 (36.0 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 83 KDIVGAAETGSGKTLAFGIPILTGIVNKLENP 114
+DI+G AETGSGKT AF +PIL + LE P
Sbjct: 61 RDIIGLAETGSGKTGAFALPILNAL---LETP 89
Score = 63 (27.2 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 148 KTRNKLYALILAPTRELAIQ 167
+T +L+AL+L PTRELA Q
Sbjct: 87 ETPQRLFALVLTPTRELAFQ 106
>UNIPROTKB|Q29S22 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
Length = 457
Score = 129 (50.5 bits), Expect = 5.2e-12, Sum P(2) = 5.2e-12
Identities = 31/64 (48%), Positives = 39/64 (60%)
Query: 9 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 68
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 33 VTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL--- 88
Query: 69 LENP 72
LE P
Sbjct: 89 LETP 92
Score = 88 (36.0 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 83 KDIVGAAETGSGKTLAFGIPILTGIVNKLENP 114
+DI+G AETGSGKT AF +PIL + LE P
Sbjct: 64 RDIIGLAETGSGKTGAFALPILNAL---LETP 92
Score = 63 (27.2 bits), Expect = 5.2e-12, Sum P(2) = 5.2e-12
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 148 KTRNKLYALILAPTRELAIQ 167
+T +L+AL+L PTRELA Q
Sbjct: 90 ETPQRLFALVLTPTRELAFQ 109
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 129 (50.5 bits), Expect = 6.1e-12, Sum P(2) = 6.1e-12
Identities = 31/64 (48%), Positives = 39/64 (60%)
Query: 9 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 68
+ + + A Q G+ PTKIQ +P AL R DI+G AETGSGKT AF +PIL +
Sbjct: 57 VTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPILNAL--- 112
Query: 69 LENP 72
LE P
Sbjct: 113 LETP 116
Score = 88 (36.0 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 83 KDIVGAAETGSGKTLAFGIPILTGIVNKLENP 114
+DI+G AETGSGKT AF +PIL + LE P
Sbjct: 88 RDIIGLAETGSGKTGAFALPILNAL---LETP 116
Score = 63 (27.2 bits), Expect = 6.1e-12, Sum P(2) = 6.1e-12
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 148 KTRNKLYALILAPTRELAIQ 167
+T +L+AL+L PTRELA Q
Sbjct: 114 ETPQRLFALVLTPTRELAFQ 133
>TIGR_CMR|CPS_1726 [details] [associations]
symbol:CPS_1726 "RNA helicase DeaD" species:167879
"Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
OMA:WIVKGVE ProtClustDB:CLSK741103
BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
Length = 611
Score = 144 (55.7 bits), Expect = 8.6e-12, Sum P(2) = 8.6e-12
Identities = 28/69 (40%), Positives = 44/69 (63%)
Query: 4 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63
+ +PE ++ A+ GF + T IQ++ +P LLA KD++G A+TG+GKT AFG+P L
Sbjct: 17 FASLGLPENLLSAVLSIGFTSATDIQALTIPP-LLAGKDVLGEAQTGTGKTAAFGLPALA 75
Query: 64 GIVNKLENP 72
I ++ P
Sbjct: 76 KIDTSIKKP 84
Score = 92 (37.4 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 81 ARKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 114
A KD++G A+TG+GKT AFG+P L I ++ P
Sbjct: 51 AGKDVLGEAQTGTGKTAAFGLPALAKIDTSIKKP 84
Score = 49 (22.3 bits), Expect = 8.6e-12, Sum P(2) = 8.6e-12
Identities = 9/12 (75%), Positives = 12/12 (100%)
Query: 156 LILAPTRELAIQ 167
++LAPTRELA+Q
Sbjct: 87 MVLAPTRELAMQ 98
>TAIR|locus:2057640 [details] [associations]
symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
Uniprot:P93008
Length = 733
Score = 142 (55.0 bits), Expect = 9.0e-12, Sum P(2) = 9.0e-12
Identities = 29/79 (36%), Positives = 49/79 (62%)
Query: 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
M W + + +++A+ + G+K P+ IQ +P L R D++G AETGSGKT AF +P
Sbjct: 312 MRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQR-DVIGIAETGSGKTAAFVLP 370
Query: 61 ILTGIVNKLENPTEEDEND 79
+L +++L +EE+E +
Sbjct: 371 MLA-YISRLPPMSEENETE 388
Score = 53 (23.7 bits), Expect = 9.0e-12, Sum P(2) = 9.0e-12
Identities = 10/14 (71%), Positives = 13/14 (92%)
Query: 154 YALILAPTRELAIQ 167
YA+++APTRELA Q
Sbjct: 391 YAVVMAPTRELAQQ 404
>TAIR|locus:2173517 [details] [associations]
symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
GermOnline:AT5G60990 Uniprot:Q8GY84
Length = 456
Score = 136 (52.9 bits), Expect = 9.7e-12, Sum P(2) = 9.7e-12
Identities = 27/63 (42%), Positives = 43/63 (68%)
Query: 4 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63
+ + + E +++A + G+K P+KIQ+ +P AL KD++G A+TGSGKT AF IPIL
Sbjct: 11 FAELGVREELVKACERLGWKNPSKIQAEALPFALEG-KDVIGLAQTGSGKTGAFAIPILQ 69
Query: 64 GIV 66
++
Sbjct: 70 ALL 72
Score = 53 (23.7 bits), Expect = 9.7e-12, Sum P(2) = 9.7e-12
Identities = 10/14 (71%), Positives = 13/14 (92%)
Query: 154 YALILAPTRELAIQ 167
+A +L+PTRELAIQ
Sbjct: 91 FACVLSPTRELAIQ 104
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 134 (52.2 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 25/59 (42%), Positives = 41/59 (69%)
Query: 7 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65
FN+ +++A+ + GF+ T IQ+ +P L + KD++G A+TG+GKT AFGIP++ I
Sbjct: 8 FNLSSDLMKAINRMGFEEATPIQAQTIPLGL-SNKDVIGQAQTGTGKTAAFGIPLVEKI 65
Score = 87 (35.7 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 81 ARKDIVGAAETGSGKTLAFGIPILTGI 107
+ KD++G A+TG+GKT AFGIP++ I
Sbjct: 39 SNKDVIGQAQTGTGKTAAFGIPLVEKI 65
Score = 55 (24.4 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 10/15 (66%), Positives = 14/15 (93%)
Query: 153 LYALILAPTRELAIQ 167
+ A+++APTRELAIQ
Sbjct: 72 IQAIVIAPTRELAIQ 86
>FB|FBgn0032919 [details] [associations]
symbol:CG9253 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
EMBL:AY121677 ProteinModelPortal:Q8MRB7 SMR:Q8MRB7 STRING:Q8MRB7
PaxDb:Q8MRB7 PRIDE:Q8MRB7 FlyBase:FBgn0032919 InParanoid:Q8MRB7
OrthoDB:EOG4V41Q7 ArrayExpress:Q8MRB7 Bgee:Q8MRB7 Uniprot:Q8MRB7
Length = 507
Score = 135 (52.6 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 31/69 (44%), Positives = 42/69 (60%)
Query: 4 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63
W + E + +A + +K P+KIQ +P AL KD++G AETGSGKT AF +PIL
Sbjct: 63 WKDLGLNEALCQACDELKWKAPSKIQREAIPVALQG-KDVIGLAETGSGKTGAFALPILH 121
Query: 64 GIVNKLENP 72
+ LENP
Sbjct: 122 AL---LENP 127
Score = 94 (38.1 bits), Expect = 6.7e-05, Sum P(2) = 6.7e-05
Identities = 20/32 (62%), Positives = 24/32 (75%)
Query: 83 KDIVGAAETGSGKTLAFGIPILTGIVNKLENP 114
KD++G AETGSGKT AF +PIL + LENP
Sbjct: 99 KDVIGLAETGSGKTGAFALPILHAL---LENP 127
Score = 54 (24.1 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 152 KLYALILAPTRELAIQ 167
+ +AL+L PTRELA Q
Sbjct: 129 RYFALVLTPTRELAFQ 144
>ZFIN|ZDB-GENE-050522-359 [details] [associations]
symbol:zgc:112350 "zgc:112350" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
Length = 512
Score = 135 (52.6 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 28/61 (45%), Positives = 39/61 (63%)
Query: 6 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65
+ + E + A Q G+K PTKIQ +P AL R D++G AETGSGKT AF +P+L +
Sbjct: 83 ELGVTEVLCEACDQLGWKKPTKIQIEAIPVALQGR-DVIGLAETGSGKTGAFAVPVLQSL 141
Query: 66 V 66
+
Sbjct: 142 L 142
Score = 54 (24.1 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 152 KLYALILAPTRELAIQ 167
+L+ L+L PTRELA Q
Sbjct: 147 RLHTLVLTPTRELAFQ 162
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 130 (50.8 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 25/50 (50%), Positives = 38/50 (76%)
Query: 13 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
I++A+ +KG+ TP+ IQ +P A+LA KD++ AA+TG+GKT F +PIL
Sbjct: 12 ILKAIEEKGYNTPSPIQLQAIP-AVLAGKDVMAAAQTGTGKTAGFTLPIL 60
Score = 57 (25.1 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 148 KTR-NKLYALILAPTRELAIQ 167
K R N++ ALIL PTRELA Q
Sbjct: 68 KVRANQVRALILTPTRELAAQ 88
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 130 (50.8 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 25/50 (50%), Positives = 38/50 (76%)
Query: 13 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
I++A+ +KG+ TP+ IQ +P A+LA KD++ AA+TG+GKT F +PIL
Sbjct: 12 ILKAIEEKGYNTPSPIQLQAIP-AVLAGKDVMAAAQTGTGKTAGFTLPIL 60
Score = 57 (25.1 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 148 KTR-NKLYALILAPTRELAIQ 167
K R N++ ALIL PTRELA Q
Sbjct: 68 KVRANQVRALILTPTRELAAQ 88
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 131 (51.2 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 6 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65
+ I + + A G+K PT IQS +P AL R D++G AETGSGKT AF +P+L +
Sbjct: 50 ELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGR-DVIGLAETGSGKTAAFALPMLQAL 108
Query: 66 V 66
+
Sbjct: 109 M 109
Score = 56 (24.8 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 153 LYALILAPTRELAIQ 167
L+ L+LAPTRELA Q
Sbjct: 115 LFGLVLAPTRELAYQ 129
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 135 (52.6 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 8 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65
N P+ I+ A+ + GF PT IQ+ P AL R D++G AETGSGKTLA+ +P L +
Sbjct: 171 NFPDNILEAIAKLGFTEPTPIQAQGWPMALKGR-DLIGIAETGSGKTLAYLLPALVHV 227
Score = 54 (24.1 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 11/12 (91%), Positives = 12/12 (100%)
Query: 156 LILAPTRELAIQ 167
LILAPTRELA+Q
Sbjct: 242 LILAPTRELAVQ 253
>UNIPROTKB|D6RJA6 [details] [associations]
symbol:DDX46 "Probable ATP-dependent RNA helicase DDX46"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR011545 Pfam:PF00270 GO:GO:0005524 GO:GO:0005730
EMBL:CH471062 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
UniGene:Hs.406549 HGNC:HGNC:18681 ChiTaRS:DDX46 EMBL:AC006077
EMBL:AC010301 IPI:IPI00967303 SMR:D6RJA6 Ensembl:ENST00000507392
Uniprot:D6RJA6
Length = 471
Score = 138 (53.6 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 4 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63
WV+ I I+ +L + G++ PT IQ+ +P A+++ +D++G A+TGSGKT+AF +P+
Sbjct: 326 WVQCGISMKILNSLKKHGYEKPTPIQTQAIP-AIMSGRDLIGIAKTGSGKTIAFLLPMFR 384
Query: 64 GIVNKLENPTEEDENDSA 81
I++ + EE E A
Sbjct: 385 HIMD--QRSLEEGEGPIA 400
Score = 48 (22.0 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 155 ALILAPTRELAIQ 167
A+I+ PTRELA+Q
Sbjct: 400 AVIMTPTRELALQ 412
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 128 (50.1 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 24/62 (38%), Positives = 42/62 (67%)
Query: 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
M + + + + +++A+ + GF+ T IQ+ +P +L KD++G A+TG+GKT AFGIP
Sbjct: 1 MTTFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSL-QNKDVIGQAQTGTGKTAAFGIP 59
Query: 61 IL 62
I+
Sbjct: 60 IV 61
Score = 87 (35.7 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 15/22 (68%), Positives = 20/22 (90%)
Query: 83 KDIVGAAETGSGKTLAFGIPIL 104
KD++G A+TG+GKT AFGIPI+
Sbjct: 40 KDVIGQAQTGTGKTAAFGIPIV 61
Score = 58 (25.5 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 144 EFVKKTRNKLYALILAPTRELAIQ 167
E V + + AL++APTRELAIQ
Sbjct: 62 EKVNVKNSAVQALVVAPTRELAIQ 85
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 136 (52.9 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 28/64 (43%), Positives = 43/64 (67%)
Query: 2 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 61
A + I ++RA+ G+++PT IQ+ +P AL+A D+VG A+TG+GKT AF IP+
Sbjct: 13 ATFADLQIHPRVLRAIGDVGYESPTAIQAATIP-ALMAGSDVVGLAQTGTGKTAAFAIPM 71
Query: 62 LTGI 65
L+ I
Sbjct: 72 LSKI 75
Score = 52 (23.4 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 155 ALILAPTRELAIQ 167
AL+L PTRELA+Q
Sbjct: 84 ALVLVPTRELALQ 96
>POMBASE|SPAC30D11.03 [details] [associations]
symbol:ddx27 "ATP-dependent RNA helicase Ddx27/Drs1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC30D11.03 GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000265456 KO:K13181 OrthoDB:EOG4B01XM PIR:S62561
RefSeq:NP_593214.1 ProteinModelPortal:Q09903 STRING:Q09903
EnsemblFungi:SPAC30D11.03.1 GeneID:2543155 KEGG:spo:SPAC30D11.03
NextBio:20804181 Uniprot:Q09903
Length = 754
Score = 143 (55.4 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 33/67 (49%), Positives = 44/67 (65%)
Query: 8 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67
N+ I++ L GF+ PT+IQ +P ALL KDIVGAA TGSGKT AF +PIL ++
Sbjct: 265 NLSRPILKGLSNLGFEVPTQIQDKTIPLALLG-KDIVGAAVTGSGKTAAFIVPILERLLY 323
Query: 68 KLEN-PT 73
+ + PT
Sbjct: 324 RPKKVPT 330
Score = 98 (39.6 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 29/62 (46%), Positives = 38/62 (61%)
Query: 60 PILTGIVNK-LENPTE-EDENDSAR---KDIVGAAETGSGKTLAFGIPILTGIVNKLEN- 113
PIL G+ N E PT+ +D+ KDIVGAA TGSGKT AF +PIL ++ + +
Sbjct: 269 PILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKV 328
Query: 114 PT 115
PT
Sbjct: 329 PT 330
Score = 48 (22.0 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 10/12 (83%), Positives = 11/12 (91%)
Query: 156 LILAPTRELAIQ 167
LIL PTRELA+Q
Sbjct: 334 LILCPTRELAMQ 345
>WB|WBGene00017162 [details] [associations]
symbol:ddx-23 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0048589 "developmental growth" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0040021 "hermaphrodite germ-line sex determination"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0002119 GO:GO:0040011
GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
GO:GO:0048589 EMBL:FO080705 GO:GO:0010172 GO:GO:0040020
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 HSSP:Q58083 HOGENOM:HOG000268796
OMA:PIRNWKE GO:GO:0040021 RefSeq:NP_498260.2
ProteinModelPortal:Q95QN2 SMR:Q95QN2 STRING:Q95QN2 PaxDb:Q95QN2
EnsemblMetazoa:F01F1.7 GeneID:175818 KEGG:cel:CELE_F01F1.7
CTD:175818 WormBase:F01F1.7 InParanoid:Q95QN2 NextBio:889790
Uniprot:Q95QN2
Length = 730
Score = 135 (52.6 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 29/78 (37%), Positives = 44/78 (56%)
Query: 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
+ W + P+ + +A+ + G+ PT IQ +P L R D++G AETGSGKT AF +P
Sbjct: 300 LRNWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNR-DVIGVAETGSGKTAAFLLP 358
Query: 61 ILTGIVN--KLENPTEED 76
+L I + K+E D
Sbjct: 359 LLVWITSLPKMERQEHRD 376
Score = 55 (24.4 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 11/14 (78%), Positives = 13/14 (92%)
Query: 154 YALILAPTRELAIQ 167
YA+I+APTRELA Q
Sbjct: 380 YAIIMAPTRELAQQ 393
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 136 (52.9 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 30/71 (42%), Positives = 47/71 (66%)
Query: 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
M+E+ F++ E+II + KG+K PT IQ +P AL+ D++G A+TG+GKT AF +P
Sbjct: 1 MSEFKAFSLLESIIDRVNLKGYKQPTPIQKECIP-ALINGNDLLGIAQTGTGKTAAFSLP 59
Query: 61 ILTGIV-NKLE 70
I+ NK++
Sbjct: 60 IINKFGRNKID 70
Score = 46 (21.3 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 10/13 (76%), Positives = 11/13 (84%)
Query: 155 ALILAPTRELAIQ 167
+LIL PTRELA Q
Sbjct: 78 SLILTPTRELASQ 90
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 126 (49.4 bits), Expect = 3.8e-11, Sum P(2) = 3.8e-11
Identities = 21/60 (35%), Positives = 43/60 (71%)
Query: 3 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
++ + E +++A+ KG++TP+ IQ+ +P A+++ +D++ AA+TG+GKT F +P+L
Sbjct: 7 KFTDLGLSEALLKAVRDKGYETPSPIQAQAIP-AVISGRDVMAAAQTGTGKTAGFTLPLL 65
Score = 58 (25.5 bits), Expect = 3.8e-11, Sum P(2) = 3.8e-11
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 147 KKTRNKLYALILAPTRELAIQ 167
K + N + ALIL PTRELA Q
Sbjct: 75 KVSSNNVRALILTPTRELAAQ 95
>UNIPROTKB|E7EX41 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC055713 EMBL:AC117503 HGNC:HGNC:20085 ChiTaRS:DDX55
IPI:IPI01018972 ProteinModelPortal:E7EX41 SMR:E7EX41
Ensembl:ENST00000354291 ArrayExpress:E7EX41 Bgee:E7EX41
Uniprot:E7EX41
Length = 191
Score = 112 (44.5 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 27/69 (39%), Positives = 38/69 (55%)
Query: 4 WVKFNIP--ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 61
W +P ++ AL + GF T +QS +P + KD+ A TGSGKTLAF IPI
Sbjct: 9 WESLPVPLHPQVLGALRELGFPYMTPVQSATIP-LFMRNKDVAAEAVTGSGKTLAFVIPI 67
Query: 62 LTGIVNKLE 70
L ++ + E
Sbjct: 68 LEILLRREE 76
Score = 78 (32.5 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 83 KDIVGAAETGSGKTLAFGIPILTGIVNKLE 112
KD+ A TGSGKTLAF IPIL ++ + E
Sbjct: 47 KDVAAEAVTGSGKTLAFVIPILEILLRREE 76
Score = 55 (24.4 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 147 KKTRNKLYALILAPTRELAIQ 167
K ++++ A+I+ PTRELAIQ
Sbjct: 77 KLKKSQVGAIIITPTRELAIQ 97
>UNIPROTKB|Q65N62 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
PATRIC:18946609 ProtClustDB:CLSK886742
BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
Length = 487
Score = 129 (50.5 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 7 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65
F + + +A+ + GF+ T IQ+ +P L A KD++G A+TG+GKT AFGIP++ I
Sbjct: 8 FQLSSDLTKAIKRMGFEEATPIQAQTIPLGL-ANKDVIGQAQTGTGKTAAFGIPLVEKI 65
Score = 90 (36.7 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 81 ARKDIVGAAETGSGKTLAFGIPILTGI 107
A KD++G A+TG+GKT AFGIP++ I
Sbjct: 39 ANKDVIGQAQTGTGKTAAFGIPLVEKI 65
Score = 55 (24.4 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 10/15 (66%), Positives = 14/15 (93%)
Query: 153 LYALILAPTRELAIQ 167
+ A+++APTRELAIQ
Sbjct: 72 IQAIVIAPTRELAIQ 86
>GENEDB_PFALCIPARUM|PFE0925c [details] [associations]
symbol:PFE0925c "snrnp protein, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
HSSP:Q58083 HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 134 (52.2 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 30/77 (38%), Positives = 47/77 (61%)
Query: 3 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
+W + N+ +++A+ + ++ PT IQ +P AL R D++G AETGSGKT AF +P+L
Sbjct: 699 KWEESNLSNDLLKAIKKAKYEKPTPIQMQAIPIALEMR-DLIGIAETGSGKTAAFVLPML 757
Query: 63 TGIVNKLENPTEEDEND 79
+ V +L T E D
Sbjct: 758 S-YVKQLPPLTYETSQD 773
Score = 59 (25.8 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 11/14 (78%), Positives = 14/14 (100%)
Query: 154 YALILAPTRELAIQ 167
YAL++AP+RELAIQ
Sbjct: 776 YALVIAPSRELAIQ 789
>UNIPROTKB|Q8I0W7 [details] [associations]
symbol:PFE0925c "Snrnp protein, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0020011 "apicoplast" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 134 (52.2 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 30/77 (38%), Positives = 47/77 (61%)
Query: 3 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
+W + N+ +++A+ + ++ PT IQ +P AL R D++G AETGSGKT AF +P+L
Sbjct: 699 KWEESNLSNDLLKAIKKAKYEKPTPIQMQAIPIALEMR-DLIGIAETGSGKTAAFVLPML 757
Query: 63 TGIVNKLENPTEEDEND 79
+ V +L T E D
Sbjct: 758 S-YVKQLPPLTYETSQD 773
Score = 59 (25.8 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 11/14 (78%), Positives = 14/14 (100%)
Query: 154 YALILAPTRELAIQ 167
YAL++AP+RELAIQ
Sbjct: 776 YALVIAPSRELAIQ 789
>UNIPROTKB|Q81JK1 [details] [associations]
symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 118 (46.6 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
Identities = 24/55 (43%), Positives = 39/55 (70%)
Query: 7 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 61
+ + + + RAL G++ PT++Q V+P AL +KD+V ++TGSGKT +FGIP+
Sbjct: 9 YALSKEVRRALTGLGYEHPTEVQGEVIPVAL-QKKDLVVKSQTGSGKTASFGIPL 62
Score = 66 (28.3 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 144 EFVKKTRNKLYALILAPTRELAIQ 167
E V+ NK AL+L PTRELA+Q
Sbjct: 64 EMVEWEENKPQALVLTPTRELAVQ 87
>TIGR_CMR|BA_5703 [details] [associations]
symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 118 (46.6 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
Identities = 24/55 (43%), Positives = 39/55 (70%)
Query: 7 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 61
+ + + + RAL G++ PT++Q V+P AL +KD+V ++TGSGKT +FGIP+
Sbjct: 9 YALSKEVRRALTGLGYEHPTEVQGEVIPVAL-QKKDLVVKSQTGSGKTASFGIPL 62
Score = 66 (28.3 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 144 EFVKKTRNKLYALILAPTRELAIQ 167
E V+ NK AL+L PTRELA+Q
Sbjct: 64 EMVEWEENKPQALVLTPTRELAVQ 87
>UNIPROTKB|A4QYM6 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:CM001233 GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K13181 RefSeq:XP_003712922.1
ProteinModelPortal:A4QYM6 STRING:A4QYM6 GeneID:2683645
KEGG:mgr:MGG_07718 OrthoDB:EOG4B01XM Uniprot:A4QYM6
Length = 790
Score = 137 (53.3 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 32/73 (43%), Positives = 44/73 (60%)
Query: 2 AEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 61
A + ++ I+R L GF PT IQS +P AL+ KD+VG A TGSGKT AF +PI
Sbjct: 255 ASFQSMSLSRPILRGLTSVGFAKPTPIQSKTIPIALMG-KDVVGGAVTGSGKTAAFVVPI 313
Query: 62 LTGIVNKLEN-PT 73
L ++ + + PT
Sbjct: 314 LERLLYRPKKVPT 326
Score = 52 (23.4 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 11/12 (91%), Positives = 12/12 (100%)
Query: 156 LILAPTRELAIQ 167
+ILAPTRELAIQ
Sbjct: 330 VILAPTRELAIQ 341
>UNIPROTKB|H0Y8L8 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HGNC:HGNC:18674 ChiTaRS:DDX41 EMBL:AC145098
Ensembl:ENST00000508279 Uniprot:H0Y8L8
Length = 173
Score = 120 (47.3 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 6 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
+ P I+R L +KG PT IQ +P+ +L+ +D++G A TGSGKTL F +P++
Sbjct: 11 EMKFPAAILRGLKKKGIHHPTPIQIQGIPT-ILSGRDMIGIAFTGSGKTLVFTLPVI 66
Score = 45 (20.9 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 154 YALILAPTRELAIQ 167
Y LI+ P+RELA Q
Sbjct: 85 YGLIICPSRELARQ 98
>GENEDB_PFALCIPARUM|PF14_0429 [details] [associations]
symbol:PF14_0429 "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HSSP:P10081 RefSeq:XP_001348603.1
ProteinModelPortal:Q8IL21 PRIDE:Q8IL21
EnsemblProtists:PF14_0429:mRNA GeneID:812011 KEGG:pfa:PF14_0429
EuPathDB:PlasmoDB:PF3D7_1445200 HOGENOM:HOG000282109
ProtClustDB:CLSZ2431945 Uniprot:Q8IL21
Length = 796
Score = 125 (49.1 bits), Expect = 5.0e-11, Sum P(2) = 5.0e-11
Identities = 27/74 (36%), Positives = 47/74 (63%)
Query: 6 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65
K I +++++L+ F PT+IQS + ++ + DIV ++TG+GKTL F +PIL I
Sbjct: 240 KIFILHSVMKSLFDNAFFKPTEIQSKTLEKSINDKNDIVVISKTGTGKTLTFCLPILNNI 299
Query: 66 -VNKLENPTEEDEN 78
+NKL+ ++ +N
Sbjct: 300 LINKLKEYKKKLKN 313
Score = 85 (35.0 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 21/47 (44%), Positives = 33/47 (70%)
Query: 68 KLENPT-EEDENDSARKDIVGAAETGSGKTLAFGIPILTGI-VNKLE 112
++++ T E+ ND + DIV ++TG+GKTL F +PIL I +NKL+
Sbjct: 261 EIQSKTLEKSIND--KNDIVVISKTGTGKTLTFCLPILNNILINKLK 305
Score = 64 (27.6 bits), Expect = 5.0e-11, Sum P(2) = 5.0e-11
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 144 EFVKKTRN--KLYALILAPTRELAIQ 167
E+ KK +N K LIL PTRELA+Q
Sbjct: 306 EYKKKLKNIQKFRCLILVPTRELALQ 331
>UNIPROTKB|Q8IL21 [details] [associations]
symbol:PF14_0429 "RNA helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 HSSP:P10081 RefSeq:XP_001348603.1
ProteinModelPortal:Q8IL21 PRIDE:Q8IL21
EnsemblProtists:PF14_0429:mRNA GeneID:812011 KEGG:pfa:PF14_0429
EuPathDB:PlasmoDB:PF3D7_1445200 HOGENOM:HOG000282109
ProtClustDB:CLSZ2431945 Uniprot:Q8IL21
Length = 796
Score = 125 (49.1 bits), Expect = 5.0e-11, Sum P(2) = 5.0e-11
Identities = 27/74 (36%), Positives = 47/74 (63%)
Query: 6 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65
K I +++++L+ F PT+IQS + ++ + DIV ++TG+GKTL F +PIL I
Sbjct: 240 KIFILHSVMKSLFDNAFFKPTEIQSKTLEKSINDKNDIVVISKTGTGKTLTFCLPILNNI 299
Query: 66 -VNKLENPTEEDEN 78
+NKL+ ++ +N
Sbjct: 300 LINKLKEYKKKLKN 313
Score = 85 (35.0 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 21/47 (44%), Positives = 33/47 (70%)
Query: 68 KLENPT-EEDENDSARKDIVGAAETGSGKTLAFGIPILTGI-VNKLE 112
++++ T E+ ND + DIV ++TG+GKTL F +PIL I +NKL+
Sbjct: 261 EIQSKTLEKSIND--KNDIVVISKTGTGKTLTFCLPILNNILINKLK 305
Score = 64 (27.6 bits), Expect = 5.0e-11, Sum P(2) = 5.0e-11
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 144 EFVKKTRN--KLYALILAPTRELAIQ 167
E+ KK +N K LIL PTRELA+Q
Sbjct: 306 EYKKKLKNIQKFRCLILVPTRELALQ 331
>POMBASE|SPAC1F7.02c [details] [associations]
symbol:has1 "ATP-dependent RNA helicase Has1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1F7.02c GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY OrthoDB:EOG4ZKNVS PIR:S62574 RefSeq:NP_594488.1
ProteinModelPortal:Q09916 STRING:Q09916 EnsemblFungi:SPAC1F7.02c.1
GeneID:2541668 KEGG:spo:SPAC1F7.02c NextBio:20802761 Uniprot:Q09916
Length = 578
Score = 130 (50.8 bits), Expect = 5.4e-11, Sum P(2) = 5.4e-11
Identities = 28/54 (51%), Positives = 40/54 (74%)
Query: 9 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
+ E I +A+ + GF+T T+IQ +P LLA +D++GAA+TGSGKTLAF IP +
Sbjct: 96 LSENIQKAIKEMGFETMTEIQKRSIPP-LLAGRDVLGAAKTGSGKTLAFLIPTI 148
Score = 55 (24.4 bits), Expect = 5.4e-11, Sum P(2) = 5.4e-11
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 148 KTRNKLYALILAPTRELAIQ 167
K RN +I++PTRELA+Q
Sbjct: 157 KPRNGTGVIIISPTRELALQ 176
Score = 37 (18.1 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 59 IPILTGIVNKLENPTEEDENDSARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 112
IP + IV +P ++ + R G+GK+L F P G + L+
Sbjct: 402 IPAVDWIVQY--DPPDDPRDYIHRVGRTARGTKGTGKSLMFLAPSELGFLRYLK 453
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 129 (50.5 bits), Expect = 5.9e-11, Sum P(2) = 5.9e-11
Identities = 26/68 (38%), Positives = 43/68 (63%)
Query: 6 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65
+ + + + A + GFKTPT IQ +P +L ++D++G A+TGSGKT AF +P++ +
Sbjct: 50 ELGVIDELCEACEKLGFKTPTPIQQEAIP-VVLNKRDVIGLAQTGSGKTAAFALPVIQEL 108
Query: 66 VNKLENPT 73
N NP+
Sbjct: 109 WN---NPS 113
Score = 53 (23.7 bits), Expect = 5.9e-11, Sum P(2) = 5.9e-11
Identities = 10/14 (71%), Positives = 13/14 (92%)
Query: 154 YALILAPTRELAIQ 167
+A++LAPTRELA Q
Sbjct: 116 FAVVLAPTRELAYQ 129
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 127 (49.8 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
Identities = 22/61 (36%), Positives = 42/61 (68%)
Query: 7 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66
F++ T+++A+ + + PT+IQ +P +LA+ D++ A+TG+GKT AF +PIL ++
Sbjct: 10 FSLDSTLLKAITESAYDEPTEIQKQSIP-LILAKHDVMARAQTGTGKTAAFALPILQQLI 68
Query: 67 N 67
+
Sbjct: 69 S 69
Score = 53 (23.7 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 146 VKKTRNKLYALILAPTRELAIQ 167
V+ + +L AL+L PTRELA Q
Sbjct: 70 VQPCKPELRALVLTPTRELAQQ 91
Score = 40 (19.1 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 62 LTGIVNKLENPTEEDENDSARKDIVGAAETGSG 94
LT I N + P + +ARKD + A + G
Sbjct: 381 LTKIANSNKRPINKK---NARKDALSAGDKSKG 410
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 127 (49.8 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
Identities = 22/61 (36%), Positives = 42/61 (68%)
Query: 7 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66
F++ T+++A+ + + PT+IQ +P +LA+ D++ A+TG+GKT AF +PIL ++
Sbjct: 10 FSLDSTLLKAITESAYDEPTEIQKQSIP-LILAKHDVMARAQTGTGKTAAFALPILQQLI 68
Query: 67 N 67
+
Sbjct: 69 S 69
Score = 53 (23.7 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 146 VKKTRNKLYALILAPTRELAIQ 167
V+ + +L AL+L PTRELA Q
Sbjct: 70 VQPCKPELRALVLTPTRELAQQ 91
Score = 40 (19.1 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 62 LTGIVNKLENPTEEDENDSARKDIVGAAETGSG 94
LT I N + P + +ARKD + A + G
Sbjct: 381 LTKIANSNKRPINKK---NARKDALSAGDKSKG 410
>ASPGD|ASPL0000051195 [details] [associations]
symbol:AN1634 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 EMBL:BN001307
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000026 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:P09052
HOGENOM:HOG000268796 OMA:PIRNWKE RefSeq:XP_659238.1
ProteinModelPortal:Q5BCU6 EnsemblFungi:CADANIAT00008272
GeneID:2874876 KEGG:ani:AN1634.2 OrthoDB:EOG4KPXK0 Uniprot:Q5BCU6
Length = 782
Score = 128 (50.1 bits), Expect = 7.6e-11, Sum P(2) = 7.6e-11
Identities = 25/62 (40%), Positives = 40/62 (64%)
Query: 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
M W + +P+ ++ + + G+K PT IQ +P A+ +R D++G A TGSGKT AF +P
Sbjct: 345 MRSWDESGLPKRLLELVDRVGYKEPTPIQRAAIPIAMQSR-DLIGVAVTGSGKTAAFLLP 403
Query: 61 IL 62
+L
Sbjct: 404 LL 405
Score = 59 (25.8 bits), Expect = 7.6e-11, Sum P(2) = 7.6e-11
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 144 EFVKKTRNKLYALILAPTRELAIQ 167
EF + + YA++LAPTRELA Q
Sbjct: 416 EFEWRKNDGPYAIVLAPTRELAQQ 439
>UNIPROTKB|O05855 [details] [associations]
symbol:rhlE "PROBABLE ATP-DEPENDENT RNA HELICASE RHLE"
species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell
wall" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005618
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003676
EMBL:BX842582 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
HOGENOM:HOG000268807 EMBL:CP003248 PIR:D70595 RefSeq:NP_217727.1
RefSeq:NP_337835.1 RefSeq:YP_006516683.1 SMR:O05855
EnsemblBacteria:EBMYCT00000003215 EnsemblBacteria:EBMYCT00000071518
GeneID:13318029 GeneID:888840 GeneID:923099 KEGG:mtc:MT3307
KEGG:mtu:Rv3211 KEGG:mtv:RVBD_3211 PATRIC:18129030
TubercuList:Rv3211 OMA:RWQLIDK ProtClustDB:CLSK792349
Uniprot:O05855
Length = 527
Score = 137 (53.3 bits), Expect = 8.1e-11, Sum P(2) = 8.1e-11
Identities = 27/64 (42%), Positives = 41/64 (64%)
Query: 4 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63
+ K + + I+RAL ++G K P IQ + +P AL +D++G A TG GKT AFG+P+L
Sbjct: 12 FAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDG-EDVIGQARTGMGKTFAFGVPLLQ 70
Query: 64 GIVN 67
I +
Sbjct: 71 RITS 74
Score = 45 (20.9 bits), Expect = 8.1e-11, Sum P(2) = 8.1e-11
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 155 ALILAPTRELAIQ 167
AL++ PTREL +Q
Sbjct: 87 ALVVVPTRELCLQ 99
>CGD|CAL0006152 [details] [associations]
symbol:DHH1 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0030996 "cell cycle arrest
in response to nitrogen starvation" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IEA] [GO:0000753 "cell
morphogenesis involved in conjugation with cellular fusion"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0000290 "deadenylation-dependent
decapping of nuclear-transcribed mRNA" evidence=IEA] [GO:0031142
"induction of conjugation upon nitrogen starvation" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0006152 GO:GO:0005524 GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 GO:GO:0000932 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037 eggNOG:COG0513
KO:K12614 InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_718704.1
RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3 SMR:Q5AAW3
GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
Length = 549
Score = 112 (44.5 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
Identities = 24/63 (38%), Positives = 38/63 (60%)
Query: 7 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66
FN+ ++ +++ GF+ P+ IQ +P AL R DI+ A+ G+GKT +F IP L +
Sbjct: 35 FNLKRELLMGIFEAGFEKPSPIQEESIPMALAGR-DILARAKNGTGKTASFIIPCLQLVK 93
Query: 67 NKL 69
KL
Sbjct: 94 PKL 96
Score = 71 (30.1 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 144 EFVKKTRNKLYALILAPTRELAIQ 167
+ VK NK+ ALIL PTRELA+Q
Sbjct: 90 QLVKPKLNKVQALILVPTRELALQ 113
>UNIPROTKB|Q5AAW3 [details] [associations]
symbol:DHH1 "ATP-dependent RNA helicase DHH1"
species:237561 "Candida albicans SC5314" [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0006152 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 GO:GO:0003723 GO:GO:0000932
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037
eggNOG:COG0513 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_718704.1 RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3
SMR:Q5AAW3 GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
Length = 549
Score = 112 (44.5 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
Identities = 24/63 (38%), Positives = 38/63 (60%)
Query: 7 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66
FN+ ++ +++ GF+ P+ IQ +P AL R DI+ A+ G+GKT +F IP L +
Sbjct: 35 FNLKRELLMGIFEAGFEKPSPIQEESIPMALAGR-DILARAKNGTGKTASFIIPCLQLVK 93
Query: 67 NKL 69
KL
Sbjct: 94 PKL 96
Score = 71 (30.1 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 144 EFVKKTRNKLYALILAPTRELAIQ 167
+ VK NK+ ALIL PTRELA+Q
Sbjct: 90 QLVKPKLNKVQALILVPTRELALQ 113
>MGI|MGI:1915247 [details] [associations]
symbol:Ddx59 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 59"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915247
GO:GO:0005524 GO:GO:0046872 GO:GO:0003723 GO:GO:0005622
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
GeneTree:ENSGT00610000086076 CTD:83479 HOGENOM:HOG000006599
HOVERGEN:HBG106120 OMA:VTRPIID EMBL:AK004833 EMBL:AK013179
EMBL:AK076462 EMBL:BC023840 IPI:IPI00119928 IPI:IPI00226119
RefSeq:NP_080776.1 UniGene:Mm.385462 UniGene:Mm.486546
ProteinModelPortal:Q9DBN9 SMR:Q9DBN9 PhosphoSite:Q9DBN9
PRIDE:Q9DBN9 Ensembl:ENSMUST00000027655 GeneID:67997 KEGG:mmu:67997
UCSC:uc007cut.1 UCSC:uc007cuu.2 InParanoid:Q9DBN9 OrthoDB:EOG4K9BBZ
ChiTaRS:DDX59 NextBio:326168 Bgee:Q9DBN9 CleanEx:MM_DDX59
Genevestigator:Q9DBN9 Uniprot:Q9DBN9
Length = 619
Score = 128 (50.1 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 26/64 (40%), Positives = 43/64 (67%)
Query: 10 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 69
PET+ + L + G++ PT IQ ++P LL R DI+ +A+TGSGKT AF +P++ ++
Sbjct: 211 PETLNQNLKKSGYEVPTPIQMQMIPVGLLGR-DILASADTGSGKTAAFLLPVIIRAFSED 269
Query: 70 ENPT 73
+ P+
Sbjct: 270 KTPS 273
Score = 55 (24.4 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 12/13 (92%), Positives = 12/13 (92%)
Query: 155 ALILAPTRELAIQ 167
ALIL PTRELAIQ
Sbjct: 274 ALILTPTRELAIQ 286
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 116 (45.9 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 25/58 (43%), Positives = 38/58 (65%)
Query: 5 VKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
+K + P I+ A+ G+ PT IQ +P +LA KDI+ AA+TG+GKT +F +P+L
Sbjct: 6 LKLSTP--ILNAIADLGYTKPTAIQQKAIP-VVLAGKDIIAAAQTGTGKTASFVLPLL 60
Score = 82 (33.9 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 23/59 (38%), Positives = 31/59 (52%)
Query: 51 SGKTLAFGIPILTGIVNK-LENPTEEDENDS----ARKDIVGAAETGSGKTLAFGIPIL 104
S TL PIL I + PT + A KDI+ AA+TG+GKT +F +P+L
Sbjct: 2 SFSTLKLSTPILNAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLL 60
Score = 62 (26.9 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 15/22 (68%), Positives = 17/22 (77%)
Query: 147 KKTRNK-LYALILAPTRELAIQ 167
KK R K + ALIL PTRELA+Q
Sbjct: 72 KKLRAKRIRALILVPTRELAVQ 93
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 124 (48.7 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 3 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
++ F + + G++TPT IQ+ +P A++A +D++G A+TG+GKT AF +PIL
Sbjct: 2 DFKSFGFHPAVATGIAAAGYETPTPIQAQAIP-AVMAGRDVMGLAQTGTGKTAAFALPIL 60
Score = 55 (24.4 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 150 RNKLYALILAPTRELAIQ 167
R ++ AL++APTRELA Q
Sbjct: 68 RGRVRALVIAPTRELAEQ 85
>UNIPROTKB|E1BSC0 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AADN02028359
IPI:IPI00577115 Ensembl:ENSGALT00000010339 Uniprot:E1BSC0
Length = 1031
Score = 140 (54.3 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 4 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63
WV+ I I+ AL + G++ PT IQS +P A++ +D++G A+TGSGKT+AF +P+
Sbjct: 373 WVQCGISMKILTALKKHGYEKPTPIQSQAIP-AIMNGRDLIGIAKTGSGKTIAFLLPMFR 431
Query: 64 GIVNKLENPTEEDENDSA 81
I++ + EE E A
Sbjct: 432 HIMD--QRALEEGEGPIA 447
Score = 48 (22.0 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 155 ALILAPTRELAIQ 167
A+I+ PTRELA+Q
Sbjct: 447 AVIMTPTRELALQ 459
>RGD|1359520 [details] [associations]
symbol:Ddx59 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 59"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1359520 GO:GO:0005524
GO:GO:0046872 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 PROSITE:PS51083
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q5STU4 GeneTree:ENSGT00610000086076 CTD:83479
HOGENOM:HOG000006599 HOVERGEN:HBG106120 EMBL:BC081871
IPI:IPI00371561 RefSeq:NP_001005535.1 RefSeq:NP_001177749.1
UniGene:Rn.230507 UniGene:Rn.34313 ProteinModelPortal:Q66HG7
SMR:Q66HG7 PhosphoSite:Q66HG7 PRIDE:Q66HG7
Ensembl:ENSRNOT00000043798 GeneID:289402 KEGG:rno:289402
UCSC:RGD:1359520 NextBio:629792 ArrayExpress:Q66HG7
Genevestigator:Q66HG7 Uniprot:Q66HG7
Length = 589
Score = 127 (49.8 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 26/64 (40%), Positives = 43/64 (67%)
Query: 10 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 69
PET+ + L + G++ PT IQ ++P LL R DI+ +A+TGSGKT AF +P++ + +
Sbjct: 211 PETLNQNLKKSGYEVPTPIQMQMIPVGLLGR-DILASADTGSGKTAAFLLPVIIRALPED 269
Query: 70 ENPT 73
+ P+
Sbjct: 270 KTPS 273
Score = 55 (24.4 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 12/13 (92%), Positives = 12/13 (92%)
Query: 155 ALILAPTRELAIQ 167
ALIL PTRELAIQ
Sbjct: 274 ALILTPTRELAIQ 286
>UNIPROTKB|Q66HG7 [details] [associations]
symbol:Ddx59 "Probable ATP-dependent RNA helicase DDX59"
species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1359520
GO:GO:0005524 GO:GO:0046872 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 GeneTree:ENSGT00610000086076 CTD:83479
HOGENOM:HOG000006599 HOVERGEN:HBG106120 EMBL:BC081871
IPI:IPI00371561 RefSeq:NP_001005535.1 RefSeq:NP_001177749.1
UniGene:Rn.230507 UniGene:Rn.34313 ProteinModelPortal:Q66HG7
SMR:Q66HG7 PhosphoSite:Q66HG7 PRIDE:Q66HG7
Ensembl:ENSRNOT00000043798 GeneID:289402 KEGG:rno:289402
UCSC:RGD:1359520 NextBio:629792 ArrayExpress:Q66HG7
Genevestigator:Q66HG7 Uniprot:Q66HG7
Length = 589
Score = 127 (49.8 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 26/64 (40%), Positives = 43/64 (67%)
Query: 10 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 69
PET+ + L + G++ PT IQ ++P LL R DI+ +A+TGSGKT AF +P++ + +
Sbjct: 211 PETLNQNLKKSGYEVPTPIQMQMIPVGLLGR-DILASADTGSGKTAAFLLPVIIRALPED 269
Query: 70 ENPT 73
+ P+
Sbjct: 270 KTPS 273
Score = 55 (24.4 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 12/13 (92%), Positives = 12/13 (92%)
Query: 155 ALILAPTRELAIQ 167
ALIL PTRELAIQ
Sbjct: 274 ALILTPTRELAIQ 286
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 133 (51.9 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 24/63 (38%), Positives = 45/63 (71%)
Query: 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
M ++ + N+ +++A+ + G++TPT IQ+ +P AL R D++G A+TG+GKT +F +P
Sbjct: 1 MTKFSELNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGR-DVLGIAQTGTGKTASFTLP 59
Query: 61 ILT 63
++T
Sbjct: 60 MIT 62
Score = 46 (21.3 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 155 ALILAPTRELAIQ 167
+L+L PTRELA Q
Sbjct: 76 SLVLCPTRELAAQ 88
Score = 36 (17.7 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 66 VNKLENPTEEDENDSAR 82
+ +LENP +E A+
Sbjct: 375 IPRLENPARTEEKPEAK 391
>ASPGD|ASPL0000044206 [details] [associations]
symbol:AN1949 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005635 "nuclear envelope" evidence=IEA] [GO:0030687
"preribosome, large subunit precursor" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 EMBL:BN001307
GO:GO:0003723 EMBL:AACD01000029 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_659553.1
ProteinModelPortal:Q5BBY1 STRING:Q5BBY1
EnsemblFungi:CADANIAT00008609 GeneID:2875602 KEGG:ani:AN1949.2
OrthoDB:EOG4ZKNVS Uniprot:Q5BBY1
Length = 609
Score = 129 (50.5 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 26/60 (43%), Positives = 42/60 (70%)
Query: 3 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
++ + + E ++ + + GF+T T+IQ +P LLA +D++GAA+TGSGKTLAF IP +
Sbjct: 129 KFTELGLSEKTLQGIKEMGFETMTEIQQRTIPP-LLAGRDVLGAAKTGSGKTLAFLIPAI 187
Score = 53 (23.7 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 148 KTRNKLYALILAPTRELAIQ 167
K RN ++++PTRELA+Q
Sbjct: 196 KPRNGTGVIVVSPTRELALQ 215
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 129 (50.5 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 26/63 (41%), Positives = 43/63 (68%)
Query: 6 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65
+ + E ++RAL + G++ PT IQS + L+A KDI+G A+TG+GKT AF +P+L +
Sbjct: 10 ELGLSENLLRALDELGYEKPTPIQSASI-DPLMAGKDILGQAQTGTGKTGAFALPLLNKV 68
Query: 66 VNK 68
++
Sbjct: 69 TSQ 71
Score = 53 (23.7 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 10/12 (83%), Positives = 12/12 (100%)
Query: 156 LILAPTRELAIQ 167
L+LAPTRELA+Q
Sbjct: 77 LVLAPTRELAVQ 88
>ASPGD|ASPL0000042587 [details] [associations]
symbol:AN1750 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:AACD01000027 EMBL:BN001307 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14805 HOGENOM:HOG000290702 RefSeq:XP_659354.1
ProteinModelPortal:Q5BCI0 STRING:Q5BCI0 PRIDE:Q5BCI0
EnsemblFungi:CADANIAT00008396 GeneID:2875695 KEGG:ani:AN1750.2
OMA:VEEGYFA OrthoDB:EOG44J5S7 Uniprot:Q5BCI0
Length = 770
Score = 135 (52.6 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 30/83 (36%), Positives = 47/83 (56%)
Query: 1 MAEWVKFNI-PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 59
++ W + PET+ +L + F TPT +Q +P +L D++G A TGSGKTLAFG+
Sbjct: 196 ISAWEPLGLSPETLT-SLSKLKFSTPTSVQKSCIPP-ILDGHDVIGKASTGSGKTLAFGL 253
Query: 60 PILTGIVNKLENPTEEDENDSAR 82
PIL + + T + E + +
Sbjct: 254 PILEHYLERERRKTIDSEEEKEK 276
Score = 49 (22.3 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 11/13 (84%), Positives = 12/13 (92%)
Query: 155 ALILAPTRELAIQ 167
ALIL+PTRELA Q
Sbjct: 280 ALILSPTRELAHQ 292
Score = 38 (18.4 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 72 PTEEDENDSARKDIVGAAETGSGKTLAFGIPILTGIVNKL 111
P EED DS+ +++V E +TL F + KL
Sbjct: 393 PDEED--DSSEENVVPGVER---QTLVFSATFHRDLQQKL 427
>ASPGD|ASPL0000062195 [details] [associations]
symbol:AN10125 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:BN001308 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:RIRKRDH EnsemblFungi:CADANIAT00001822 Uniprot:C8VQD7
Length = 814
Score = 139 (54.0 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 31/57 (54%), Positives = 37/57 (64%)
Query: 6 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
+FN+ I+R L F PT IQ +P ALL KDIVG+A TGSGKT AF +PIL
Sbjct: 302 EFNLSRPILRGLAAVNFTNPTPIQQKTIPVALLG-KDIVGSAVTGSGKTAAFVVPIL 357
Score = 45 (20.9 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 157 ILAPTRELAIQ 167
IL PTRELA+Q
Sbjct: 374 ILMPTRELAVQ 384
>CGD|CAL0003050 [details] [associations]
symbol:HAS1 species:5476 "Candida albicans" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IGI;ISS] [GO:0042274
"ribosomal small subunit biogenesis" evidence=IGI;ISS] [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0030687 "preribosome, large subunit precursor" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 GO:GO:0042274
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000012
InterPro:IPR025313 Pfam:PF13959 KO:K13179 EMBL:AACQ01000011
RefSeq:XP_721871.1 RefSeq:XP_722031.1 STRING:Q5AK59 GeneID:3636361
GeneID:3636443 KEGG:cal:CaO19.11444 KEGG:cal:CaO19.3962
Uniprot:Q5AK59
Length = 565
Score = 125 (49.1 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 26/52 (50%), Positives = 38/52 (73%)
Query: 11 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
E ++A+ + GF TK+Q+ +P LLA +D++GAA+TGSGKTLAF IP +
Sbjct: 117 EPTMKAIKEMGFTKMTKVQAKTIPP-LLAGRDVLGAAKTGSGKTLAFLIPAI 167
Score = 55 (24.4 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 148 KTRNKLYALILAPTRELAIQ 167
K RN +I+ PTRELA+Q
Sbjct: 176 KPRNGTAVIIITPTRELALQ 195
Score = 35 (17.4 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 14/54 (25%), Positives = 22/54 (40%)
Query: 59 IPILTGIVNKLENPTEEDENDSARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 112
IP + IV +P ++ + R G GK+L F P G + L+
Sbjct: 420 IPAVDWIVQF--DPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSELGFLRYLK 471
>UNIPROTKB|Q5AK59 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase HAS1"
species:237561 "Candida albicans SC5314" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IGI] [GO:0042274 "ribosomal small
subunit biogenesis" evidence=IGI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0042274 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AACQ01000012 InterPro:IPR025313 Pfam:PF13959 KO:K13179
EMBL:AACQ01000011 RefSeq:XP_721871.1 RefSeq:XP_722031.1
STRING:Q5AK59 GeneID:3636361 GeneID:3636443 KEGG:cal:CaO19.11444
KEGG:cal:CaO19.3962 Uniprot:Q5AK59
Length = 565
Score = 125 (49.1 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 26/52 (50%), Positives = 38/52 (73%)
Query: 11 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
E ++A+ + GF TK+Q+ +P LLA +D++GAA+TGSGKTLAF IP +
Sbjct: 117 EPTMKAIKEMGFTKMTKVQAKTIPP-LLAGRDVLGAAKTGSGKTLAFLIPAI 167
Score = 55 (24.4 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 148 KTRNKLYALILAPTRELAIQ 167
K RN +I+ PTRELA+Q
Sbjct: 176 KPRNGTAVIIITPTRELALQ 195
Score = 35 (17.4 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 14/54 (25%), Positives = 22/54 (40%)
Query: 59 IPILTGIVNKLENPTEEDENDSARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 112
IP + IV +P ++ + R G GK+L F P G + L+
Sbjct: 420 IPAVDWIVQF--DPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSELGFLRYLK 471
>ASPGD|ASPL0000069536 [details] [associations]
symbol:AN7424 species:162425 "Emericella nidulans"
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268804 KO:K14811 RefSeq:XP_680693.1
GeneID:2869574 KEGG:ani:AN7424.2 OrthoDB:EOG42JS0S Uniprot:Q5AWA6
Length = 488
Score = 130 (50.8 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 26/47 (55%), Positives = 34/47 (72%)
Query: 21 GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67
GF +PT IQS P L A +D++G AETGSGKTLAFG+P L +++
Sbjct: 92 GFASPTAIQSATWP-LLFAGRDVIGIAETGSGKTLAFGLPCLKKVLD 137
Score = 95 (38.5 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 17/29 (58%), Positives = 24/29 (82%)
Query: 81 ARKDIVGAAETGSGKTLAFGIPILTGIVN 109
A +D++G AETGSGKTLAFG+P L +++
Sbjct: 109 AGRDVIGIAETGSGKTLAFGLPCLKKVLD 137
Score = 48 (22.0 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 148 KTRNKL---YALILAPTRELAIQ 167
KT+ K A++++PTRELA+Q
Sbjct: 139 KTKQKSCRPLAVVISPTRELAMQ 161
>UNIPROTKB|B7Z5N6 [details] [associations]
symbol:DDX59 "cDNA FLJ56549, highly similar to Homo sapiens
DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 (DDX59), transcript
variant 2, mRNA" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AL445483 UniGene:Hs.497332 HGNC:HGNC:25360
HOGENOM:HOG000006599 HOVERGEN:HBG106120 OrthoDB:EOG4K9BBZ
EMBL:AK299219 IPI:IPI00514037 SMR:B7Z5N6 Ensembl:ENST00000367348
UCSC:uc010ppl.1 Uniprot:B7Z5N6
Length = 567
Score = 125 (49.1 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 25/66 (37%), Positives = 43/66 (65%)
Query: 8 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67
++PE + L + G++ PT IQ ++P LL R DI+ +A+TGSGKT AF +P++ +
Sbjct: 209 SLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGR-DILASADTGSGKTAAFLLPVIMRALF 267
Query: 68 KLENPT 73
+ + P+
Sbjct: 268 ESKTPS 273
Score = 55 (24.4 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 12/13 (92%), Positives = 12/13 (92%)
Query: 155 ALILAPTRELAIQ 167
ALIL PTRELAIQ
Sbjct: 274 ALILTPTRELAIQ 286
>UNIPROTKB|E2R4Z9 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 EMBL:AAEX03005031
Ensembl:ENSCAFT00000017691 Uniprot:E2R4Z9
Length = 569
Score = 125 (49.1 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 25/64 (39%), Positives = 41/64 (64%)
Query: 10 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 69
PE + L G++ PT IQ ++P LL R D++ +A+TGSGKT AF +P++T + +
Sbjct: 212 PEALNHNLKTSGYEVPTPIQMQMIPVGLLGR-DVLASADTGSGKTAAFLLPVITRALCES 270
Query: 70 ENPT 73
+ P+
Sbjct: 271 KTPS 274
Score = 55 (24.4 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 12/13 (92%), Positives = 12/13 (92%)
Query: 155 ALILAPTRELAIQ 167
ALIL PTRELAIQ
Sbjct: 275 ALILTPTRELAIQ 287
>UNIPROTKB|Q7L014 [details] [associations]
symbol:DDX46 "Probable ATP-dependent RNA helicase DDX46"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0015030 "Cajal body" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12811 EMBL:AF106680 EMBL:AB018344 EMBL:BC012304 EMBL:BK000565
IPI:IPI00329791 RefSeq:NP_055644.2 UniGene:Hs.406549
ProteinModelPortal:Q7L014 SMR:Q7L014 IntAct:Q7L014
MINT:MINT-3002486 STRING:Q7L014 PhosphoSite:Q7L014 DMDM:116241326
PaxDb:Q7L014 PeptideAtlas:Q7L014 PRIDE:Q7L014
Ensembl:ENST00000354283 Ensembl:ENST00000452510 GeneID:9879
KEGG:hsa:9879 UCSC:uc003kzw.3 CTD:9879 GeneCards:GC05P134094
HGNC:HGNC:18681 HPA:HPA036554 neXtProt:NX_Q7L014
PharmGKB:PA134894452 HOGENOM:HOG000007229 HOVERGEN:HBG081426
InParanoid:Q7L014 OrthoDB:EOG441Q9T ChiTaRS:DDX46 GenomeRNAi:9879
NextBio:37233 PMAP-CutDB:Q7L014 ArrayExpress:Q7L014 Bgee:Q7L014
CleanEx:HS_DDX46 Genevestigator:Q7L014 GermOnline:ENSG00000145833
Uniprot:Q7L014
Length = 1031
Score = 138 (53.6 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 4 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63
WV+ I I+ +L + G++ PT IQ+ +P A+++ +D++G A+TGSGKT+AF +P+
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIP-AIMSGRDLIGIAKTGSGKTIAFLLPMFR 432
Query: 64 GIVNKLENPTEEDENDSA 81
I++ + EE E A
Sbjct: 433 HIMD--QRSLEEGEGPIA 448
Score = 48 (22.0 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 155 ALILAPTRELAIQ 167
A+I+ PTRELA+Q
Sbjct: 448 AVIMTPTRELALQ 460
>UNIPROTKB|F1MX40 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:DAAA02020348
EMBL:DAAA02020349 IPI:IPI00703383 Ensembl:ENSBTAT00000028682
Uniprot:F1MX40
Length = 1032
Score = 138 (53.6 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 4 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63
WV+ I I+ +L + G++ PT IQ+ +P A+++ +D++G A+TGSGKT+AF +P+
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIP-AIMSGRDLIGIAKTGSGKTIAFLLPMFR 432
Query: 64 GIVNKLENPTEEDENDSA 81
I++ + EE E A
Sbjct: 433 HIMD--QRSLEEGEGPIA 448
Score = 48 (22.0 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 155 ALILAPTRELAIQ 167
A+I+ PTRELA+Q
Sbjct: 448 AVIMTPTRELALQ 460
>UNIPROTKB|F1PK90 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AAEX03007786
Ensembl:ENSCAFT00000001619 Uniprot:F1PK90
Length = 1032
Score = 138 (53.6 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 4 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63
WV+ I I+ +L + G++ PT IQ+ +P A+++ +D++G A+TGSGKT+AF +P+
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIP-AIMSGRDLIGIAKTGSGKTIAFLLPMFR 432
Query: 64 GIVNKLENPTEEDENDSA 81
I++ + EE E A
Sbjct: 433 HIMD--QRSLEEGEGPIA 448
Score = 48 (22.0 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 155 ALILAPTRELAIQ 167
A+I+ PTRELA+Q
Sbjct: 448 AVIMTPTRELALQ 460
>UNIPROTKB|I3LR20 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:FP312757
Ensembl:ENSSSCT00000027801 Uniprot:I3LR20
Length = 1032
Score = 138 (53.6 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 4 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63
WV+ I I+ +L + G++ PT IQ+ +P A+++ +D++G A+TGSGKT+AF +P+
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIP-AIMSGRDLIGIAKTGSGKTIAFLLPMFR 432
Query: 64 GIVNKLENPTEEDENDSA 81
I++ + EE E A
Sbjct: 433 HIMD--QRSLEEGEGPIA 448
Score = 48 (22.0 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 155 ALILAPTRELAIQ 167
A+I+ PTRELA+Q
Sbjct: 448 AVIMTPTRELALQ 460
>MGI|MGI:1920895 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1920895
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T ChiTaRS:DDX46 EMBL:AK129220 EMBL:BC026492
EMBL:BC092240 IPI:IPI00468896 IPI:IPI00660556 RefSeq:NP_666087.3
UniGene:Mm.202725 ProteinModelPortal:Q569Z5 SMR:Q569Z5
STRING:Q569Z5 PhosphoSite:Q569Z5 PaxDb:Q569Z5 PRIDE:Q569Z5
Ensembl:ENSMUST00000172272 GeneID:212880 KEGG:mmu:212880
UCSC:uc011yzx.1 InParanoid:Q569Z5 OMA:IEEENKF NextBio:373723
Bgee:Q569Z5 CleanEx:MM_DDX46 Genevestigator:Q569Z5
GermOnline:ENSMUSG00000021500 Uniprot:Q569Z5
Length = 1032
Score = 138 (53.6 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 4 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63
WV+ I I+ +L + G++ PT IQ+ +P A+++ +D++G A+TGSGKT+AF +P+
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIP-AIMSGRDLIGIAKTGSGKTIAFLLPMFR 432
Query: 64 GIVNKLENPTEEDENDSA 81
I++ + EE E A
Sbjct: 433 HIMD--QRSLEEGEGPIA 448
Score = 48 (22.0 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 155 ALILAPTRELAIQ 167
A+I+ PTRELA+Q
Sbjct: 448 AVIMTPTRELALQ 460
>RGD|708480 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:708480
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0003723 GO:GO:0015030
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 KO:K12811 CTD:9879
HOGENOM:HOG000007229 HOVERGEN:HBG081426 OrthoDB:EOG441Q9T
EMBL:U25746 EMBL:BC107590 IPI:IPI00208266 PIR:A57514
RefSeq:NP_620798.1 UniGene:Rn.3436 ProteinModelPortal:Q62780
STRING:Q62780 PhosphoSite:Q62780 PRIDE:Q62780
Ensembl:ENSRNOT00000029885 GeneID:245957 KEGG:rno:245957
UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 138 (53.6 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 4 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63
WV+ I I+ +L + G++ PT IQ+ +P A+++ +D++G A+TGSGKT+AF +P+
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIP-AIMSGRDLIGIAKTGSGKTIAFLLPMFR 432
Query: 64 GIVNKLENPTEEDENDSA 81
I++ + EE E A
Sbjct: 433 HIMD--QRSLEEGEGPIA 448
Score = 48 (22.0 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 155 ALILAPTRELAIQ 167
A+I+ PTRELA+Q
Sbjct: 448 AVIMTPTRELALQ 460
>UNIPROTKB|Q62780 [details] [associations]
symbol:Ddx46 "Probable ATP-dependent RNA helicase DDX46"
species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:708480 GO:GO:0005524
GO:GO:0005634 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T EMBL:U25746 EMBL:BC107590 IPI:IPI00208266
PIR:A57514 RefSeq:NP_620798.1 UniGene:Rn.3436
ProteinModelPortal:Q62780 STRING:Q62780 PhosphoSite:Q62780
PRIDE:Q62780 Ensembl:ENSRNOT00000029885 GeneID:245957
KEGG:rno:245957 UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 138 (53.6 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 4 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63
WV+ I I+ +L + G++ PT IQ+ +P A+++ +D++G A+TGSGKT+AF +P+
Sbjct: 374 WVQCGISMKILNSLKKHGYEKPTPIQTQAIP-AIMSGRDLIGIAKTGSGKTIAFLLPMFR 432
Query: 64 GIVNKLENPTEEDENDSA 81
I++ + EE E A
Sbjct: 433 HIMD--QRSLEEGEGPIA 448
Score = 48 (22.0 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 155 ALILAPTRELAIQ 167
A+I+ PTRELA+Q
Sbjct: 448 AVIMTPTRELALQ 460
>TAIR|locus:2034481 [details] [associations]
symbol:STRS1 "STRESS RESPONSE SUPPRESSOR 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510
"RNA methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005730
EMBL:AC079041 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811
OMA:DRILVFC EMBL:AC074309 EMBL:AY080680 EMBL:AY117298 EMBL:AJ010458
IPI:IPI00547293 PIR:A86444 PIR:T51739 RefSeq:NP_174479.1
UniGene:At.20258 ProteinModelPortal:Q9C551 SMR:Q9C551 STRING:Q9C551
PaxDb:Q9C551 PRIDE:Q9C551 EnsemblPlants:AT1G31970.1 GeneID:840087
KEGG:ath:AT1G31970 GeneFarm:911 TAIR:At1g31970 InParanoid:Q9C551
PhylomeDB:Q9C551 ProtClustDB:CLSN2682598 Genevestigator:Q9C551
GermOnline:AT1G31970 Uniprot:Q9C551
Length = 537
Score = 129 (50.5 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 28/61 (45%), Positives = 40/61 (65%)
Query: 8 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67
N+PE ++ K F+ P+ IQS P LL +D++G A+TGSGKTLAFGIP + ++
Sbjct: 122 NLPENVLDCC--KTFEKPSPIQSHTWPF-LLDGRDLIGIAKTGSGKTLAFGIPAIMHVLK 178
Query: 68 K 68
K
Sbjct: 179 K 179
Score = 92 (37.4 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 16/28 (57%), Positives = 23/28 (82%)
Query: 83 KDIVGAAETGSGKTLAFGIPILTGIVNK 110
+D++G A+TGSGKTLAFGIP + ++ K
Sbjct: 152 RDLIGIAKTGSGKTLAFGIPAIMHVLKK 179
Score = 50 (22.7 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 9/12 (75%), Positives = 12/12 (100%)
Query: 156 LILAPTRELAIQ 167
L+L+PTRELA+Q
Sbjct: 195 LVLSPTRELAVQ 206
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 122 (48.0 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 27/65 (41%), Positives = 39/65 (60%)
Query: 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
+ +++ I ET L + G T IQ +P +L+ KDI+G A+TG+GKTLAF +P
Sbjct: 4 LKNFLELGISETFNHTLRENGITEATPIQEKAIP-VILSGKDIIGQAKTGTGKTLAFVLP 62
Query: 61 ILTGI 65
IL I
Sbjct: 63 ILEKI 67
Score = 85 (35.0 bits), Expect = 0.0010, Sum P(2) = 0.0010
Identities = 17/25 (68%), Positives = 21/25 (84%)
Query: 83 KDIVGAAETGSGKTLAFGIPILTGI 107
KDI+G A+TG+GKTLAF +PIL I
Sbjct: 43 KDIIGQAKTGTGKTLAFVLPILEKI 67
Score = 55 (24.4 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 144 EFVKKTRNKLYALILAPTRELAIQ 167
E + + + ALI+APTRELA+Q
Sbjct: 65 EKIDPESSDVQALIVAPTRELALQ 88
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 122 (48.0 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 27/65 (41%), Positives = 39/65 (60%)
Query: 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
+ +++ I ET L + G T IQ +P +L+ KDI+G A+TG+GKTLAF +P
Sbjct: 4 LKNFLELGISETFNHTLRENGITEATPIQEKAIP-VILSGKDIIGQAKTGTGKTLAFVLP 62
Query: 61 ILTGI 65
IL I
Sbjct: 63 ILEKI 67
Score = 85 (35.0 bits), Expect = 0.0010, Sum P(2) = 0.0010
Identities = 17/25 (68%), Positives = 21/25 (84%)
Query: 83 KDIVGAAETGSGKTLAFGIPILTGI 107
KDI+G A+TG+GKTLAF +PIL I
Sbjct: 43 KDIIGQAKTGTGKTLAFVLPILEKI 67
Score = 55 (24.4 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 144 EFVKKTRNKLYALILAPTRELAIQ 167
E + + + ALI+APTRELA+Q
Sbjct: 65 EKIDPESSDVQALIVAPTRELALQ 88
>UNIPROTKB|P21507 [details] [associations]
symbol:srmB "SrmB, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0033592 "RNA strand annealing activity"
evidence=IDA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:D64044 GO:GO:0030687 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0033592 EMBL:D13169
OMA:PLAMDQR HOGENOM:HOG000268807 PDB:2YJT PDBsum:2YJT EMBL:X14152
PIR:G65035 RefSeq:NP_417071.1 RefSeq:YP_490804.1
ProteinModelPortal:P21507 SMR:P21507 DIP:DIP-10920N IntAct:P21507
MINT:MINT-1225512 PRIDE:P21507 EnsemblBacteria:EBESCT00000003180
EnsemblBacteria:EBESCT00000015098 GeneID:12934372 GeneID:947055
KEGG:ecj:Y75_p2529 KEGG:eco:b2576 PATRIC:32120551 EchoBASE:EB0968
EcoGene:EG10975 KO:K05590 ProtClustDB:PRK11192
BioCyc:EcoCyc:EG10975-MONOMER BioCyc:ECOL316407:JW2560-MONOMER
Genevestigator:P21507 Uniprot:P21507
Length = 444
Score = 124 (48.7 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 25/62 (40%), Positives = 41/62 (66%)
Query: 6 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65
+ + E+++ AL KGF PT IQ+ +P AL R D++G+A TG+GKT A+ +P L +
Sbjct: 8 ELELDESLLEALQDKGFTRPTAIQAAAIPPALDGR-DVLGSAPTGTGKTAAYLLPALQHL 66
Query: 66 VN 67
++
Sbjct: 67 LD 68
Score = 52 (23.4 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 144 EFVKKTRNKLYALILAPTRELAIQ 167
+F +K LIL PTRELA+Q
Sbjct: 68 DFPRKKSGPPRILILTPTRELAMQ 91
Score = 34 (17.0 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 69 LENPTEEDENDSARK 83
LE+P E N S R+
Sbjct: 204 LEDPVEVSANPSTRE 218
>UNIPROTKB|Q5T1V6 [details] [associations]
symbol:DDX59 "Probable ATP-dependent RNA helicase DDX59"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 PROSITE:PS51083
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AL136611 EMBL:AL445483 EMBL:BC014183 EMBL:BC041801
IPI:IPI00010449 IPI:IPI00217157 RefSeq:NP_001026895.2
UniGene:Hs.497332 PDB:2YQP PDBsum:2YQP ProteinModelPortal:Q5T1V6
SMR:Q5T1V6 PhosphoSite:Q5T1V6 DMDM:74762230 PaxDb:Q5T1V6
PRIDE:Q5T1V6 DNASU:83479 Ensembl:ENST00000331314
Ensembl:ENST00000447706 GeneID:83479 KEGG:hsa:83479 UCSC:uc009wzk.3
CTD:83479 GeneCards:GC01M200594 HGNC:HGNC:25360 HPA:HPA047166
neXtProt:NX_Q5T1V6 PharmGKB:PA142672000 HOGENOM:HOG000006599
HOVERGEN:HBG106120 InParanoid:Q5T1V6 OMA:VTRPIID PhylomeDB:Q5T1V6
EvolutionaryTrace:Q5T1V6 GenomeRNAi:83479 NextBio:72419
ArrayExpress:Q5T1V6 Bgee:Q5T1V6 CleanEx:HS_DDX59
Genevestigator:Q5T1V6 Uniprot:Q5T1V6
Length = 619
Score = 125 (49.1 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 25/66 (37%), Positives = 43/66 (65%)
Query: 8 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67
++PE + L + G++ PT IQ ++P LL R DI+ +A+TGSGKT AF +P++ +
Sbjct: 209 SLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGR-DILASADTGSGKTAAFLLPVIMRALF 267
Query: 68 KLENPT 73
+ + P+
Sbjct: 268 ESKTPS 273
Score = 55 (24.4 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 12/13 (92%), Positives = 12/13 (92%)
Query: 155 ALILAPTRELAIQ 167
ALIL PTRELAIQ
Sbjct: 274 ALILTPTRELAIQ 286
>UNIPROTKB|E2R4Y9 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:AAEX03005031
Ensembl:ENSCAFT00000017696 Uniprot:E2R4Y9
Length = 623
Score = 125 (49.1 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 25/64 (39%), Positives = 41/64 (64%)
Query: 10 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 69
PE + L G++ PT IQ ++P LL R D++ +A+TGSGKT AF +P++T + +
Sbjct: 212 PEALNHNLKTSGYEVPTPIQMQMIPVGLLGR-DVLASADTGSGKTAAFLLPVITRALCES 270
Query: 70 ENPT 73
+ P+
Sbjct: 271 KTPS 274
Score = 55 (24.4 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 12/13 (92%), Positives = 12/13 (92%)
Query: 155 ALILAPTRELAIQ 167
ALIL PTRELAIQ
Sbjct: 275 ALILTPTRELAIQ 287
>SGD|S000004266 [details] [associations]
symbol:DBP9 "DEAD-box protein required for 27S rRNA
processing" species:4932 "Saccharomyces cerevisiae" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000463 "maturation
of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IDA] [GO:0033680 "ATP-dependent DNA/RNA helicase
activity" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000004266 GO:GO:0005524
GO:GO:0005730 EMBL:BK006945 GO:GO:0003723 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000463
GO:GO:0004004 GO:GO:0033680 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:U17245 KO:K14810 HOGENOM:HOG000253015
OMA:TFLMSAT OrthoDB:EOG4DFSWQ EMBL:AY723847 PIR:S51412
RefSeq:NP_013378.1 ProteinModelPortal:Q06218 SMR:Q06218
DIP:DIP-4771N IntAct:Q06218 MINT:MINT-487200 STRING:Q06218
PaxDb:Q06218 PeptideAtlas:Q06218 EnsemblFungi:YLR276C GeneID:850982
KEGG:sce:YLR276C CYGD:YLR276c GeneTree:ENSGT00550000074946
NextBio:967498 Genevestigator:Q06218 GermOnline:YLR276C
Uniprot:Q06218
Length = 594
Score = 135 (52.6 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 7 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66
F++ +++A+ GF+ PT IQS +P AL ++DI+ A TGSGKTLA+ IP++ I+
Sbjct: 22 FHLDSRLLQAIKNIGFQYPTLIQSHAIPLALQQKRDIIAKAATGSGKTLAYLIPVIETIL 81
Query: 67 NKLENPTEEDEN 78
+ +EN
Sbjct: 82 EYKKTIDNGEEN 93
Score = 44 (20.5 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 151 NKLYALILAPTRELAIQ 167
N +IL PTRELA Q
Sbjct: 93 NGTLGIILVPTRELAQQ 109
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 125 (49.1 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 27/60 (45%), Positives = 37/60 (61%)
Query: 6 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65
+ N+ ++ ++ F PT IQS +P AL KDI+G A+TGSGKT AF IPIL +
Sbjct: 127 ELNLVPDLLESIESMKFTKPTPIQSEAIPHALEG-KDIIGLAQTGSGKTAAFAIPILQSL 185
Score = 89 (36.4 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 83 KDIVGAAETGSGKTLAFGIPILTGI 107
KDI+G A+TGSGKT AF IPIL +
Sbjct: 161 KDIIGLAQTGSGKTAAFAIPILQSL 185
Score = 53 (23.7 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 154 YALILAPTRELAIQ 167
+AL+LAPTREL Q
Sbjct: 193 FALVLAPTRELTFQ 206
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 120 (47.3 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 21/56 (37%), Positives = 40/56 (71%)
Query: 13 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 68
I+RA+ ++G++ PT IQ +P A+L +D++ +A+TG+GKT F +P+L ++ +
Sbjct: 12 ILRAVAEQGYREPTPIQQQAIP-AVLEGRDLMASAQTGTGKTAGFTLPLLQHLITR 66
Score = 56 (24.8 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 148 KTRNKLYALILAPTRELAIQ 167
K R + ALIL PTRELA Q
Sbjct: 71 KGRRPVRALILTPTRELAAQ 90
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 123 (48.4 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 28/54 (51%), Positives = 35/54 (64%)
Query: 9 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
+PE +I+A + PT IQS +P AL DI+G A+TGSGKT AF IPIL
Sbjct: 89 VPE-LIQACKNLNYSKPTPIQSKAIPPALEGH-DIIGLAQTGSGKTAAFAIPIL 140
Score = 54 (24.1 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 12/14 (85%), Positives = 12/14 (85%)
Query: 154 YALILAPTRELAIQ 167
YA ILAPTRELA Q
Sbjct: 151 YACILAPTRELAQQ 164
>SGD|S000004903 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0008186 "RNA-dependent ATPase
activity" evidence=IDA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA;IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0005635 "nuclear envelope" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=IEA;IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000004903 GO:GO:0005524
GO:GO:0005635 GO:GO:0005730 GO:GO:0003723 EMBL:BK006946
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030686 GO:GO:0006364 GO:GO:0004004 EMBL:X80836
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 OrthoDB:EOG4ZKNVS
PIR:S47451 RefSeq:NP_014017.1 ProteinModelPortal:Q03532 SMR:Q03532
DIP:DIP-4396N IntAct:Q03532 MINT:MINT-482816 STRING:Q03532
PaxDb:Q03532 PeptideAtlas:Q03532 EnsemblFungi:YMR290C GeneID:855335
KEGG:sce:YMR290C CYGD:YMR290c NextBio:979064 Genevestigator:Q03532
GermOnline:YMR290C Uniprot:Q03532
Length = 505
Score = 125 (49.1 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 25/57 (43%), Positives = 40/57 (70%)
Query: 6 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
+ + + ++A+ + GF T T +Q+ +P LLA +D++GAA+TGSGKTLAF IP +
Sbjct: 46 ELKLSQPTLKAIEKMGFTTMTSVQARTIPP-LLAGRDVLGAAKTGSGKTLAFLIPAI 101
Score = 52 (23.4 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 148 KTRNKLYALILAPTRELAIQ 167
K RN +++ PTRELA+Q
Sbjct: 110 KPRNGTGIIVITPTRELALQ 129
Score = 33 (16.7 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 13/54 (24%), Positives = 22/54 (40%)
Query: 59 IPILTGIVNKLENPTEEDENDSARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 112
IP + I+ +P ++ + R G GK+L F P G + L+
Sbjct: 355 IPAVDWIIQF--DPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPNELGFLRYLK 406
>FB|FBgn0025140 [details] [associations]
symbol:pit "pitchoune" species:7227 "Drosophila melanogaster"
[GO:0005730 "nucleolus" evidence=NAS;IDA] [GO:0016049 "cell growth"
evidence=IMP] [GO:0008283 "cell proliferation" evidence=IMP]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=NAS] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K13179 OMA:KDGYRSY EMBL:U84552 EMBL:AY071402
EMBL:AY119620 RefSeq:NP_524446.3 RefSeq:NP_732694.2
UniGene:Dm.33428 ProteinModelPortal:Q9VD51 SMR:Q9VD51
DIP:DIP-19700N MINT:MINT-1004790 STRING:Q9VD51 PaxDb:Q9VD51
EnsemblMetazoa:FBtr0084174 EnsemblMetazoa:FBtr0084175 GeneID:42595
KEGG:dme:Dmel_CG6375 UCSC:CG6375-RA CTD:42595 FlyBase:FBgn0025140
GeneTree:ENSGT00680000100037 InParanoid:Q9VD51 OrthoDB:EOG4H189W
PhylomeDB:Q9VD51 ChiTaRS:pit GenomeRNAi:42595 NextBio:829597
Bgee:Q9VD51 GermOnline:CG6375 Uniprot:Q9VD51
Length = 680
Score = 133 (51.9 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 31/65 (47%), Positives = 45/65 (69%)
Query: 5 VKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTG 64
+K + E +RA+ + GF T+IQS + + LL +D+VGAA+TGSGKTLAF IP +
Sbjct: 190 LKGAVSEATLRAIKEMGFTEMTEIQSKSL-TPLLKGRDLVGAAQTGSGKTLAFLIPAVE- 247
Query: 65 IVNKL 69
++NKL
Sbjct: 248 LINKL 252
Score = 47 (21.6 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 150 RNKLYALILAPTRELAIQ 167
RN +I++PTREL++Q
Sbjct: 257 RNGTGVIIISPTRELSMQ 274
>UNIPROTKB|G3X7G8 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:DAAA02043967 EMBL:DAAA02043968
RefSeq:NP_001179318.1 UniGene:Bt.41740 Ensembl:ENSBTAT00000027398
GeneID:514901 KEGG:bta:514901 NextBio:20871562 Uniprot:G3X7G8
Length = 620
Score = 129 (50.5 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 25/64 (39%), Positives = 43/64 (67%)
Query: 10 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 69
PE + R L G++ PT IQ ++P LL R D++ +A+TGSGKT AF +P++ +++
Sbjct: 212 PEALNRNLKASGYEVPTPIQMQMIPVGLLGR-DVLASADTGSGKTAAFLLPVILRALSQS 270
Query: 70 ENPT 73
++P+
Sbjct: 271 KSPS 274
Score = 50 (22.7 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 10/12 (83%), Positives = 11/12 (91%)
Query: 156 LILAPTRELAIQ 167
L+L PTRELAIQ
Sbjct: 276 LVLTPTRELAIQ 287
>ASPGD|ASPL0000006660 [details] [associations]
symbol:AN5931 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
Length = 563
Score = 124 (48.7 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 26/56 (46%), Positives = 37/56 (66%)
Query: 10 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65
P+ ++ + +GF+ PT IQS P AL R D+VG AETGSGKTL++ +P + I
Sbjct: 148 PQYVLSEVKAQGFEKPTAIQSQGWPMALSGR-DVVGIAETGSGKTLSYCLPAIVHI 202
Score = 54 (24.1 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 11/12 (91%), Positives = 12/12 (100%)
Query: 156 LILAPTRELAIQ 167
LILAPTRELA+Q
Sbjct: 217 LILAPTRELAVQ 228
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 125 (49.1 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 24/62 (38%), Positives = 42/62 (67%)
Query: 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
M + + + +++++++ GF+ T IQ+ +P AL KDI+G A+TG+GKT AFG+P
Sbjct: 1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQG-KDIIGQAQTGTGKTAAFGLP 59
Query: 61 IL 62
+L
Sbjct: 60 LL 61
Score = 52 (23.4 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 150 RNKLYALILAPTRELAIQ 167
+ + +++APTRELAIQ
Sbjct: 68 KESVQGIVIAPTRELAIQ 85
>UNIPROTKB|A0R8U6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
ProteinModelPortal:A0R8U6 STRING:A0R8U6
EnsemblBacteria:EBBACT00000069056 GeneID:4546566
GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
Length = 528
Score = 125 (49.1 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 24/62 (38%), Positives = 42/62 (67%)
Query: 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
M + + + +++++++ GF+ T IQ+ +P AL KDI+G A+TG+GKT AFG+P
Sbjct: 1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQG-KDIIGQAQTGTGKTAAFGLP 59
Query: 61 IL 62
+L
Sbjct: 60 LL 61
Score = 52 (23.4 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 150 RNKLYALILAPTRELAIQ 167
+ + +++APTRELAIQ
Sbjct: 68 KESVQGIVIAPTRELAIQ 85
>UNIPROTKB|Q63GX5 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
"bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
ProteinModelPortal:Q63GX5 STRING:Q63GX5
EnsemblBacteria:EBBACT00000041470 GeneID:3022962
GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
Length = 528
Score = 125 (49.1 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 24/62 (38%), Positives = 42/62 (67%)
Query: 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
M + + + +++++++ GF+ T IQ+ +P AL KDI+G A+TG+GKT AFG+P
Sbjct: 1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQG-KDIIGQAQTGTGKTAAFGLP 59
Query: 61 IL 62
+L
Sbjct: 60 LL 61
Score = 52 (23.4 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 150 RNKLYALILAPTRELAIQ 167
+ + +++APTRELAIQ
Sbjct: 68 KESVQGIVIAPTRELAIQ 85
>UNIPROTKB|Q6HPE6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:281309 "Bacillus thuringiensis serovar konkukian str.
97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
Length = 528
Score = 125 (49.1 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 24/62 (38%), Positives = 42/62 (67%)
Query: 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
M + + + +++++++ GF+ T IQ+ +P AL KDI+G A+TG+GKT AFG+P
Sbjct: 1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQG-KDIIGQAQTGTGKTAAFGLP 59
Query: 61 IL 62
+L
Sbjct: 60 LL 61
Score = 52 (23.4 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 150 RNKLYALILAPTRELAIQ 167
+ + +++APTRELAIQ
Sbjct: 68 KESVQGIVIAPTRELAIQ 85
>UNIPROTKB|Q81VG0 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 125 (49.1 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 24/62 (38%), Positives = 42/62 (67%)
Query: 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
M + + + +++++++ GF+ T IQ+ +P AL KDI+G A+TG+GKT AFG+P
Sbjct: 1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQG-KDIIGQAQTGTGKTAAFGLP 59
Query: 61 IL 62
+L
Sbjct: 60 LL 61
Score = 52 (23.4 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 150 RNKLYALILAPTRELAIQ 167
+ + +++APTRELAIQ
Sbjct: 68 KESVQGIVIAPTRELAIQ 85
>TIGR_CMR|BA_0247 [details] [associations]
symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 125 (49.1 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 24/62 (38%), Positives = 42/62 (67%)
Query: 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
M + + + +++++++ GF+ T IQ+ +P AL KDI+G A+TG+GKT AFG+P
Sbjct: 1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQG-KDIIGQAQTGTGKTAAFGLP 59
Query: 61 IL 62
+L
Sbjct: 60 LL 61
Score = 52 (23.4 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 150 RNKLYALILAPTRELAIQ 167
+ + +++APTRELAIQ
Sbjct: 68 KESVQGIVIAPTRELAIQ 85
>UNIPROTKB|Q81IT9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
Length = 533
Score = 125 (49.1 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 24/62 (38%), Positives = 42/62 (67%)
Query: 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
M + + + +++++++ GF+ T IQ+ +P AL KDI+G A+TG+GKT AFG+P
Sbjct: 1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQG-KDIIGQAQTGTGKTAAFGLP 59
Query: 61 IL 62
+L
Sbjct: 60 LL 61
Score = 52 (23.4 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 150 RNKLYALILAPTRELAIQ 167
+ + +++APTRELAIQ
Sbjct: 68 KESVQGIVIAPTRELAIQ 85
>UNIPROTKB|F8VRX4 [details] [associations]
symbol:DDX54 "ATP-dependent RNA helicase DDX54"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC089999 HGNC:HGNC:20084 ChiTaRS:DDX54 IPI:IPI01022245
ProteinModelPortal:F8VRX4 SMR:F8VRX4 Ensembl:ENST00000552375
ArrayExpress:F8VRX4 Bgee:F8VRX4 Uniprot:F8VRX4
Length = 208
Score = 108 (43.1 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 13 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 61
+ + + +KG+K PT IQ +P +L KD+V A TGSGKT F +P+
Sbjct: 24 VFKGIMKKGYKVPTPIQRKTIP-VILDGKDVVAMARTGSGKTACFLLPM 71
Score = 54 (24.1 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 11/13 (84%), Positives = 13/13 (100%)
Query: 155 ALILAPTRELAIQ 167
ALIL+PTRELA+Q
Sbjct: 86 ALILSPTRELALQ 98
>WB|WBGene00018007 [details] [associations]
symbol:F33D11.10 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0018996 GO:GO:0003676
GO:GO:0000910 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 GO:GO:0001703 KO:K13025 OMA:IFGKQPF
EMBL:FO080753 PIR:T32773 RefSeq:NP_491703.1
ProteinModelPortal:O44781 SMR:O44781 DIP:DIP-27243N IntAct:O44781
MINT:MINT-1047941 STRING:O44781 PaxDb:O44781
EnsemblMetazoa:F33D11.10.1 EnsemblMetazoa:F33D11.10.2 GeneID:172258
KEGG:cel:CELE_F33D11.10 UCSC:F33D11.10.1 CTD:172258
WormBase:F33D11.10 InParanoid:O44781 NextBio:874709 Uniprot:O44781
Length = 399
Score = 118 (46.6 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 22/60 (36%), Positives = 37/60 (61%)
Query: 6 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65
K + E ++R +Y GF+ P+ IQ +P+ L AR D++ A++G+GKT F I +L +
Sbjct: 30 KMGLREDLLRGIYAYGFEKPSAIQQRAVPAILKAR-DVIAQAQSGTGKTATFSISVLQSL 88
Score = 55 (24.4 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 11/13 (84%), Positives = 13/13 (100%)
Query: 155 ALILAPTRELAIQ 167
ALIL+PTRELA+Q
Sbjct: 97 ALILSPTRELAVQ 109
>WB|WBGene00022029 [details] [associations]
symbol:Y65B4A.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0018991 "oviposition" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
GO:GO:0018996 GO:GO:0040011 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT EMBL:FO081482
RefSeq:NP_490761.2 ProteinModelPortal:Q9BL61 SMR:Q9BL61
STRING:Q9BL61 PaxDb:Q9BL61 EnsemblMetazoa:Y65B4A.6 GeneID:190485
KEGG:cel:CELE_Y65B4A.6 UCSC:Y65B4A.6 CTD:190485 WormBase:Y65B4A.6
InParanoid:Q9BL61 NextBio:945920 Uniprot:Q9BL61
Length = 399
Score = 118 (46.6 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 22/60 (36%), Positives = 37/60 (61%)
Query: 6 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65
K + E ++R +Y GF+ P+ IQ +P+ L AR D++ A++G+GKT F I +L +
Sbjct: 30 KMGLREDLLRGIYAYGFEKPSAIQQRAIPAILKAR-DVIAQAQSGTGKTATFSISVLQSL 88
Score = 55 (24.4 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 11/13 (84%), Positives = 13/13 (100%)
Query: 155 ALILAPTRELAIQ 167
ALIL+PTRELA+Q
Sbjct: 97 ALILSPTRELAVQ 109
>ASPGD|ASPL0000061778 [details] [associations]
symbol:AN0589 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 RefSeq:XP_658193.1
ProteinModelPortal:Q5BFU1 SMR:Q5BFU1 STRING:Q5BFU1
EnsemblFungi:CADANIAT00002085 GeneID:2876356 KEGG:ani:AN0589.2
HOGENOM:HOG000268801 OMA:MFERKNQ OrthoDB:EOG4R53B0 Uniprot:Q5BFU1
Length = 812
Score = 126 (49.4 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 30/60 (50%), Positives = 37/60 (61%)
Query: 9 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 68
I E + L FKT T IQS + AL R D++GAA+TGSGKTLAF +PIL + K
Sbjct: 55 ISEPTLSGLTSSHFKTLTDIQSRAISHALKGR-DVLGAAKTGSGKTLAFLVPILENLYRK 113
Score = 94 (38.1 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 28/82 (34%), Positives = 45/82 (54%)
Query: 35 SALLAR-KDIVGAAETGSGKTLAFGIPILTGIVNK-LENPTEEDENDSAR----KDIVGA 88
S+L+ R +D+ A+ S L P L+G+ + + T+ + +D++GA
Sbjct: 32 SSLIKRVEDLDLKAKYESFSDLPISEPTLSGLTSSHFKTLTDIQSRAISHALKGRDVLGA 91
Query: 89 AETGSGKTLAFGIPILTGIVNK 110
A+TGSGKTLAF +PIL + K
Sbjct: 92 AKTGSGKTLAFLVPILENLYRK 113
Score = 55 (24.4 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 12/15 (80%), Positives = 14/15 (93%)
Query: 153 LYALILAPTRELAIQ 167
L ALI++PTRELAIQ
Sbjct: 121 LGALIISPTRELAIQ 135
>ZFIN|ZDB-GENE-030131-667 [details] [associations]
symbol:ddx46 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 46" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP] [GO:0031017 "exocrine
pancreas development" evidence=IMP] [GO:0007420 "brain development"
evidence=IMP] [GO:0048546 "digestive tract morphogenesis"
evidence=IMP] [GO:0072576 "liver morphogenesis" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-667
GO:GO:0005524 GO:GO:0007420 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0048546
GO:GO:0008026 GO:GO:0031017 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF GO:GO:0072576
EMBL:CU302316 IPI:IPI00865887 Ensembl:ENSDART00000099265
ArrayExpress:F1RA00 Bgee:F1RA00 Uniprot:F1RA00
Length = 1035
Score = 135 (52.6 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 28/78 (35%), Positives = 49/78 (62%)
Query: 4 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63
WV+ I ++ AL + ++ PT IQ+ +P A+++ +D++G A+TGSGKT+AF +P+
Sbjct: 359 WVQCGISMKVLNALKKHNYEKPTPIQAQAIP-AIMSGRDLIGIAKTGSGKTIAFLLPMFR 417
Query: 64 GIVNKLENPTEEDENDSA 81
I++ + P E E A
Sbjct: 418 HILD--QRPVGEAEGPLA 433
Score = 48 (22.0 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 155 ALILAPTRELAIQ 167
A+I+ PTRELA+Q
Sbjct: 433 AVIMTPTRELALQ 445
>UNIPROTKB|Q9KKW0 [details] [associations]
symbol:VCA0990 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GenomeReviews:AE003853_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:IGAKENA ProtClustDB:CLSK869861
EMBL:AE004426 PIR:H82390 RefSeq:NP_233374.1
ProteinModelPortal:Q9KKW0 DNASU:2612329 GeneID:2612329
KEGG:vch:VCA0990 PATRIC:20086502 Uniprot:Q9KKW0
Length = 428
Score = 117 (46.2 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 25/50 (50%), Positives = 36/50 (72%)
Query: 13 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
+I+AL K P+ IQ++V+P A+L KD+ A TGSGKTLA+G+P+L
Sbjct: 34 LIQAL-PKAITEPSAIQTLVIP-AMLTGKDVFALANTGSGKTLAYGLPLL 81
Score = 56 (24.8 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 148 KTRNKLYALILAPTRELAIQ 167
KT + AL+L PTRELA+Q
Sbjct: 85 KTSPEQQALVLVPTRELAMQ 104
>TIGR_CMR|VC_A0990 [details] [associations]
symbol:VC_A0990 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GenomeReviews:AE003853_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:IGAKENA ProtClustDB:CLSK869861
EMBL:AE004426 PIR:H82390 RefSeq:NP_233374.1
ProteinModelPortal:Q9KKW0 DNASU:2612329 GeneID:2612329
KEGG:vch:VCA0990 PATRIC:20086502 Uniprot:Q9KKW0
Length = 428
Score = 117 (46.2 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 25/50 (50%), Positives = 36/50 (72%)
Query: 13 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
+I+AL K P+ IQ++V+P A+L KD+ A TGSGKTLA+G+P+L
Sbjct: 34 LIQAL-PKAITEPSAIQTLVIP-AMLTGKDVFALANTGSGKTLAYGLPLL 81
Score = 56 (24.8 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 148 KTRNKLYALILAPTRELAIQ 167
KT + AL+L PTRELA+Q
Sbjct: 85 KTSPEQQALVLVPTRELAMQ 104
>UNIPROTKB|I3LV06 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:FP312674 RefSeq:XP_003357711.1
Ensembl:ENSSSCT00000031167 GeneID:100621580 KEGG:ssc:100621580
Uniprot:I3LV06
Length = 607
Score = 123 (48.4 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 26/64 (40%), Positives = 42/64 (65%)
Query: 10 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 69
PET+ L G++ PT IQ ++P LL R D++ +A+TGSGKT AF +P++T + +
Sbjct: 199 PETLNFNLKTAGYEVPTPIQMQMIPVGLLGR-DLLASADTGSGKTAAFLLPVITRALVQS 257
Query: 70 ENPT 73
+ P+
Sbjct: 258 KAPS 261
Score = 54 (24.1 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 11/13 (84%), Positives = 12/13 (92%)
Query: 155 ALILAPTRELAIQ 167
AL+L PTRELAIQ
Sbjct: 262 ALVLTPTRELAIQ 274
>TAIR|locus:2127043 [details] [associations]
symbol:RH8 "RNAhelicase-like 8" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0016032 "viral reproduction" evidence=IMP] [GO:0019048
"virus-host interaction" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0019048 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 EMBL:AF058919 EMBL:AL161472
GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
KO:K12614 InterPro:IPR014014 PROSITE:PS51195 OMA:QFMEKHL
ProtClustDB:CLSN2683443 EMBL:AJ010460 EMBL:AY080837 EMBL:AY113985
IPI:IPI00531108 PIR:T01230 PIR:T51741 RefSeq:NP_191975.2
RefSeq:NP_849535.1 UniGene:At.25593 UniGene:At.67100
UniGene:At.71300 ProteinModelPortal:Q8RXK6 SMR:Q8RXK6 STRING:Q8RXK6
PaxDb:Q8RXK6 PRIDE:Q8RXK6 EnsemblPlants:AT4G00660.1
EnsemblPlants:AT4G00660.2 GeneID:828042 KEGG:ath:AT4G00660
GeneFarm:919 TAIR:At4g00660 InParanoid:Q8RXK6 PhylomeDB:Q8RXK6
Genevestigator:Q8RXK6 GermOnline:AT4G00660 Uniprot:Q8RXK6
Length = 505
Score = 118 (46.6 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 25/63 (39%), Positives = 39/63 (61%)
Query: 3 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
E+ + + ++ +Y+KGF+ P+ IQ +P AL R DI+ A+ G+GKT AF IP+L
Sbjct: 132 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGR-DILARAKNGTGKTAAFCIPVL 190
Query: 63 TGI 65
I
Sbjct: 191 EKI 193
Score = 57 (25.1 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 144 EFVKKTRNKLYALILAPTRELAIQ 167
E + + N + A+I+ PTRELA+Q
Sbjct: 191 EKIDQDNNVIQAVIIVPTRELALQ 214
>UNIPROTKB|Q8EDC4 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 130 (50.8 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 25/65 (38%), Positives = 44/65 (67%)
Query: 3 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
++ F++ + ++++L G TPT IQ +P AL A KD++ +++TGSGKTLAF +P L
Sbjct: 2 QFTDFSLDQRLLQSLKHMGIATPTAIQEQALPIAL-AGKDLMASSKTGSGKTLAFLLPAL 60
Query: 63 TGIVN 67
+++
Sbjct: 61 QRVIS 65
Score = 43 (20.2 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 10/12 (83%), Positives = 10/12 (83%)
Query: 156 LILAPTRELAIQ 167
LIL PTRELA Q
Sbjct: 77 LILLPTRELAHQ 88
>TIGR_CMR|SO_2838 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 130 (50.8 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 25/65 (38%), Positives = 44/65 (67%)
Query: 3 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
++ F++ + ++++L G TPT IQ +P AL A KD++ +++TGSGKTLAF +P L
Sbjct: 2 QFTDFSLDQRLLQSLKHMGIATPTAIQEQALPIAL-AGKDLMASSKTGSGKTLAFLLPAL 60
Query: 63 TGIVN 67
+++
Sbjct: 61 QRVIS 65
Score = 43 (20.2 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 10/12 (83%), Positives = 10/12 (83%)
Query: 156 LILAPTRELAIQ 167
LIL PTRELA Q
Sbjct: 77 LILLPTRELAHQ 88
>UNIPROTKB|Q9KV52 [details] [associations]
symbol:rhlB "ATP-dependent RNA helicase RhlB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0006401 "RNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
Length = 438
Score = 118 (46.6 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 32/87 (36%), Positives = 48/87 (55%)
Query: 3 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
++ F + +I L +KGF T IQ++ +P LL+ +DI G A+TG+GKTLAF L
Sbjct: 10 KFADFGLQPQVIDGLEKKGFVYCTPIQALALP-VLLSGQDIAGQAQTGTGKTLAF----L 64
Query: 63 TGIVNKL-ENPTEEDENDSARKDIVGA 88
T N L P E ++ + I+ A
Sbjct: 65 TATFNHLLTTPAAEGRAETQPRAIIMA 91
Score = 55 (24.4 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 11/13 (84%), Positives = 13/13 (100%)
Query: 155 ALILAPTRELAIQ 167
A+I+APTRELAIQ
Sbjct: 87 AIIMAPTRELAIQ 99
>TIGR_CMR|VC_0305 [details] [associations]
symbol:VC_0305 "ATP-dependent RNA helicase RhlB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
Length = 438
Score = 118 (46.6 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 32/87 (36%), Positives = 48/87 (55%)
Query: 3 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
++ F + +I L +KGF T IQ++ +P LL+ +DI G A+TG+GKTLAF L
Sbjct: 10 KFADFGLQPQVIDGLEKKGFVYCTPIQALALP-VLLSGQDIAGQAQTGTGKTLAF----L 64
Query: 63 TGIVNKL-ENPTEEDENDSARKDIVGA 88
T N L P E ++ + I+ A
Sbjct: 65 TATFNHLLTTPAAEGRAETQPRAIIMA 91
Score = 55 (24.4 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 11/13 (84%), Positives = 13/13 (100%)
Query: 155 ALILAPTRELAIQ 167
A+I+APTRELAIQ
Sbjct: 87 AIIMAPTRELAIQ 99
>POMBASE|SPBC17D1.06 [details] [associations]
symbol:dbp3 "ATP-dependent RNA helicase Dbp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000027
"ribosomal large subunit assembly" evidence=ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPBC17D1.06 GO:GO:0005524
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S
PIR:T39709 RefSeq:NP_596388.1 ProteinModelPortal:Q10202
STRING:Q10202 PRIDE:Q10202 EnsemblFungi:SPBC17D1.06.1
GeneID:2540213 KEGG:spo:SPBC17D1.06 OMA:DRILVFC NextBio:20801345
Uniprot:Q10202
Length = 578
Score = 128 (50.1 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 27/43 (62%), Positives = 32/43 (74%)
Query: 20 KGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
K +K PT IQ+ P LLA +D+VG AETGSGKT+AFGIP L
Sbjct: 183 KNYKEPTPIQAATWPY-LLAGRDVVGIAETGSGKTVAFGIPAL 224
Score = 93 (37.8 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 81 ARKDIVGAAETGSGKTLAFGIPIL 104
A +D+VG AETGSGKT+AFGIP L
Sbjct: 201 AGRDVVGIAETGSGKTVAFGIPAL 224
Score = 48 (22.0 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 9/12 (75%), Positives = 12/12 (100%)
Query: 156 LILAPTRELAIQ 167
L+++PTRELAIQ
Sbjct: 240 LVVSPTRELAIQ 251
>WB|WBGene00012059 [details] [associations]
symbol:T26G10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0010171 GO:GO:0003723 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 KO:K14777
OMA:IFIPSKF EMBL:Z29115 PIR:S40731 RefSeq:NP_499069.1
ProteinModelPortal:P34580 SMR:P34580 STRING:P34580 PaxDb:P34580
EnsemblMetazoa:T26G10.1 GeneID:176321 KEGG:cel:CELE_T26G10.1
UCSC:T26G10.1 CTD:176321 WormBase:T26G10.1 InParanoid:P34580
NextBio:892086 Uniprot:P34580
Length = 489
Score = 125 (49.1 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 25/64 (39%), Positives = 40/64 (62%)
Query: 4 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63
+ + + + + A + G+ P+KIQ +P AL KD++G AETGSGKT AF IP+L
Sbjct: 46 FAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQG-KDVIGLAETGSGKTGAFAIPVLQ 104
Query: 64 GIVN 67
+++
Sbjct: 105 SLLD 108
Score = 49 (22.3 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 154 YALILAPTRELAIQ 167
+ L+L PTRELA Q
Sbjct: 114 FCLVLTPTRELAFQ 127
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 130 (50.8 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 28/61 (45%), Positives = 40/61 (65%)
Query: 8 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67
++P +I + ++GF PT IQS P AL R D+VG A+TGSGKTLA+ +P + I N
Sbjct: 243 SLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGR-DLVGIAQTGSGKTLAYMLPAIVHIGN 301
Query: 68 K 68
+
Sbjct: 302 Q 302
Score = 51 (23.0 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 11/13 (84%), Positives = 12/13 (92%)
Query: 155 ALILAPTRELAIQ 167
AL+LAPTRELA Q
Sbjct: 313 ALVLAPTRELAQQ 325
>UNIPROTKB|A5D7C1 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:BC140501 IPI:IPI00692860
RefSeq:NP_001096708.1 UniGene:Bt.51117 ProteinModelPortal:A5D7C1
SMR:A5D7C1 PRIDE:A5D7C1 Ensembl:ENSBTAT00000013622 GeneID:510826
KEGG:bta:510826 CTD:11056 GeneTree:ENSGT00550000074863
HOGENOM:HOG000242486 HOVERGEN:HBG051332 InParanoid:A5D7C1 KO:K14779
OMA:NVMKQSG OrthoDB:EOG4XKV6Q NextBio:20869637 ArrayExpress:A5D7C1
Uniprot:A5D7C1
Length = 596
Score = 122 (48.0 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 27/70 (38%), Positives = 43/70 (61%)
Query: 6 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65
++ I +++ + GF+TPT IQ +P +L ++++ +A TGSGKTLAF IPIL
Sbjct: 167 EYKINSRLLQNILDAGFQTPTPIQMQAIP-VMLHGRELLASAPTGSGKTLAFSIPILM-- 223
Query: 66 VNKLENPTEE 75
L+ PT +
Sbjct: 224 --HLKQPTNK 231
Score = 54 (24.1 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 146 VKKTRNKLY-ALILAPTRELAIQ 167
+K+ NK + ALI++PTRELA Q
Sbjct: 225 LKQPTNKGFRALIISPTRELASQ 247
>SGD|S000003046 [details] [associations]
symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
"endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
Length = 523
Score = 129 (50.5 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 28/57 (49%), Positives = 40/57 (70%)
Query: 11 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67
++ I+A K F PT IQ++ P LL+ KD+VG AETGSGKT AFG+P ++ ++N
Sbjct: 122 DSSIQAEISK-FPKPTPIQAVAWPY-LLSGKDVVGVAETGSGKTFAFGVPAISHLMN 176
Score = 99 (39.9 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 83 KDIVGAAETGSGKTLAFGIPILTGIVN 109
KD+VG AETGSGKT AFG+P ++ ++N
Sbjct: 150 KDVVGVAETGSGKTFAFGVPAISHLMN 176
Score = 45 (20.9 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 147 KKTRNKLYALILAPTRELAIQ 167
+K R + L+++PTRELA Q
Sbjct: 178 QKKRG-IQVLVISPTRELASQ 197
>GENEDB_PFALCIPARUM|PFL2475w [details] [associations]
symbol:PFL2475w "DEAD/DEAH box helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014188 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 KO:K13181 RefSeq:XP_001350899.1
ProteinModelPortal:Q8I4R9 EnsemblProtists:PFL2475w:mRNA
GeneID:811547 KEGG:pfa:PFL2475w EuPathDB:PlasmoDB:PF3D7_1251500
HOGENOM:HOG000283593 OMA:ANSFMEL ProtClustDB:CLSZ2433580
Uniprot:Q8I4R9
Length = 717
Score = 125 (49.1 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
Identities = 28/66 (42%), Positives = 39/66 (59%)
Query: 4 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63
W I ++ LY++ F PT IQ V+P AL K I+ +ETGSGKTLAF +PIL
Sbjct: 89 WSDLYISRPFLKVLYEQKFSNPTYIQRDVIPLALEG-KSILANSETGSGKTLAFVLPILE 147
Query: 64 GIVNKL 69
++ +
Sbjct: 148 RLLQSV 153
Score = 52 (23.4 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 146 VKKTRNKLYALILAPTRELAIQ 167
+K + N ALIL PTREL++Q
Sbjct: 162 MKGSYNITKALILLPTRELSLQ 183
>UNIPROTKB|Q8I4R9 [details] [associations]
symbol:PFL2475w "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014188 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 KO:K13181 RefSeq:XP_001350899.1
ProteinModelPortal:Q8I4R9 EnsemblProtists:PFL2475w:mRNA
GeneID:811547 KEGG:pfa:PFL2475w EuPathDB:PlasmoDB:PF3D7_1251500
HOGENOM:HOG000283593 OMA:ANSFMEL ProtClustDB:CLSZ2433580
Uniprot:Q8I4R9
Length = 717
Score = 125 (49.1 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
Identities = 28/66 (42%), Positives = 39/66 (59%)
Query: 4 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63
W I ++ LY++ F PT IQ V+P AL K I+ +ETGSGKTLAF +PIL
Sbjct: 89 WSDLYISRPFLKVLYEQKFSNPTYIQRDVIPLALEG-KSILANSETGSGKTLAFVLPILE 147
Query: 64 GIVNKL 69
++ +
Sbjct: 148 RLLQSV 153
Score = 52 (23.4 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 146 VKKTRNKLYALILAPTRELAIQ 167
+K + N ALIL PTREL++Q
Sbjct: 162 MKGSYNITKALILLPTRELSLQ 183
>TAIR|locus:2010306 [details] [associations]
symbol:EMB1586 "embryo defective 1586" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009663 "plasmodesma organization"
evidence=IMP] [GO:0003724 "RNA helicase activity" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0010497
"plasmodesmata-mediated intercellular transport" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524 GO:GO:0003723
EMBL:AC012187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0010497 EMBL:AC025417 EMBL:AY062618 EMBL:AY114691
EMBL:AK175587 EMBL:AK175711 EMBL:AK175751 EMBL:AK175793
EMBL:AK176044 EMBL:AK176194 EMBL:AK226229 EMBL:AK229878
EMBL:AK230085 IPI:IPI00521991 PIR:H86260 RefSeq:NP_172737.2
UniGene:At.47876 ProteinModelPortal:Q8W4E1 SMR:Q8W4E1 PaxDb:Q8W4E1
PRIDE:Q8W4E1 EnsemblPlants:AT1G12770.1 GeneID:837833
KEGG:ath:AT1G12770 GeneFarm:1026 TAIR:At1g12770
HOGENOM:HOG000239285 InParanoid:Q8W4E1 OMA:IRVSNFV PhylomeDB:Q8W4E1
ProtClustDB:CLSN2681499 Genevestigator:Q8W4E1 GO:GO:0009663
Uniprot:Q8W4E1
Length = 551
Score = 124 (48.7 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
Identities = 30/81 (37%), Positives = 49/81 (60%)
Query: 6 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65
+ +P++++ +L ++GF PT +QS +P A++ D V + TGSGKTLA+ +PIL+ I
Sbjct: 114 ELGLPDSLLDSLEREGFSVPTDVQSAAVP-AIIKGHDAVIQSYTGSGKTLAYLLPILSEI 172
Query: 66 VNKLENP-TEEDENDSARKDI 85
E + END R +I
Sbjct: 173 GPLAEKSRSSHSENDK-RTEI 192
Score = 50 (22.7 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
Identities = 9/18 (50%), Positives = 15/18 (83%)
Query: 150 RNKLYALILAPTRELAIQ 167
R ++ A+I+AP+REL +Q
Sbjct: 189 RTEIQAMIVAPSRELGMQ 206
>DICTYBASE|DDB_G0282741 [details] [associations]
symbol:ddx18 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0282741 GO:GO:0005524
GO:GO:0005730 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 InterPro:IPR025313 Pfam:PF13959
RefSeq:XP_640236.1 ProteinModelPortal:Q54S03 STRING:Q54S03
EnsemblProtists:DDB0234194 GeneID:8623775 KEGG:ddi:DDB_G0282741
KO:K13179 OMA:KDGYRSY Uniprot:Q54S03
Length = 602
Score = 120 (47.3 bits), Expect = 7.0e-10, Sum P(2) = 7.0e-10
Identities = 32/74 (43%), Positives = 46/74 (62%)
Query: 3 EWVKF-NIP--ETIIRALYQKGFKTPTKIQSM-VMPSALLARKDIVGAAETGSGKTLAFG 58
E ++F N+P E +++ + GFK T IQ+ ++P LL KD++GAA TGSGKTLAF
Sbjct: 117 ESIEFSNLPIEENTKKSIEEMGFKKMTPIQAKSILP--LLEGKDLLGAARTGSGKTLAFL 174
Query: 59 IPILTGIVNKLENP 72
IP + +V P
Sbjct: 175 IPAIEVLVKSNFKP 188
Score = 55 (24.4 bits), Expect = 7.0e-10, Sum P(2) = 7.0e-10
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 148 KTRNKLYALILAPTRELAIQ 167
K RN +I++PTRELA+Q
Sbjct: 187 KPRNGTGVIIISPTRELALQ 206
>ASPGD|ASPL0000036135 [details] [associations]
symbol:AN10417 species:162425 "Emericella nidulans"
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0003724 "RNA
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0030996 "cell
cycle arrest in response to nitrogen starvation" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IEA]
[GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0031142 "induction of
conjugation upon nitrogen starvation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:BN001306 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 OMA:HIDPARF
EnsemblFungi:CADANIAT00009573 Uniprot:C8VHA5
Length = 498
Score = 111 (44.1 bits), Expect = 7.1e-10, Sum P(2) = 7.1e-10
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 3 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
E+ F I ++ +++ GF+ P+ IQ +P AL R DI+ A+ G+GKT AF IP L
Sbjct: 40 EFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGR-DILARAKNGTGKTAAFVIPTL 98
Query: 63 TGI 65
I
Sbjct: 99 ERI 101
Score = 62 (26.9 bits), Expect = 7.1e-10, Sum P(2) = 7.1e-10
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 142 TTEFVKKTRNKLYALILAPTRELAIQ 167
T E + K ALIL PTRELA+Q
Sbjct: 97 TLERINPKSTKTQALILVPTRELALQ 122
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 115 (45.5 bits), Expect = 7.1e-10, Sum P(2) = 7.1e-10
Identities = 20/57 (35%), Positives = 39/57 (68%)
Query: 6 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
+ + + +++ + Q G++ PT IQ+ +P +L +D++ AA+TG+GKT +F +PIL
Sbjct: 5 QLGLSDVLVQTVAQLGYQKPTHIQTQAIP-VILQGRDLIAAAQTGTGKTASFVLPIL 60
Score = 55 (24.4 bits), Expect = 7.1e-10, Sum P(2) = 7.1e-10
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 150 RNKLYALILAPTRELAIQ 167
+ ++ ALIL PTRELA+Q
Sbjct: 71 KKRVRALILVPTRELAMQ 88
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 115 (45.5 bits), Expect = 7.1e-10, Sum P(2) = 7.1e-10
Identities = 20/57 (35%), Positives = 39/57 (68%)
Query: 6 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
+ + + +++ + Q G++ PT IQ+ +P +L +D++ AA+TG+GKT +F +PIL
Sbjct: 5 QLGLSDVLVQTVAQLGYQKPTHIQTQAIP-VILQGRDLIAAAQTGTGKTASFVLPIL 60
Score = 55 (24.4 bits), Expect = 7.1e-10, Sum P(2) = 7.1e-10
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 150 RNKLYALILAPTRELAIQ 167
+ ++ ALIL PTRELA+Q
Sbjct: 71 KKRVRALILVPTRELAMQ 88
>FB|FBgn0030631 [details] [associations]
symbol:CG6227 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014298 GO:GO:0005681 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
HSSP:Q58083 GeneTree:ENSGT00610000086076 KO:K12811 OMA:RGRYKVL
EMBL:FJ764847 EMBL:FJ764848 EMBL:FJ764851 EMBL:FJ764853
EMBL:FJ764855 EMBL:FJ764858 FlyBase:FBgn0030631 EMBL:BT016090
RefSeq:NP_573020.2 UniGene:Dm.168 SMR:Q9VXW2 IntAct:Q9VXW2
EnsemblMetazoa:FBtr0074011 GeneID:32464 KEGG:dme:Dmel_CG6227
UCSC:CG6227-RA InParanoid:Q9VXW2 GenomeRNAi:32464 NextBio:778600
Uniprot:Q9VXW2
Length = 1224
Score = 134 (52.2 bits), Expect = 7.1e-10, Sum P(2) = 7.1e-10
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 4 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63
W + + + + L + GF+ PT IQ +P A+++ +D++G A+TGSGKTLAF +P+
Sbjct: 512 WAQCGVSKKEMEVLRRLGFEKPTPIQCQAIP-AIMSGRDLIGIAKTGSGKTLAFILPMFR 570
Query: 64 GIVNKLENPTEEDENDSA 81
I L+ P+ ED D A
Sbjct: 571 HI---LDQPSMED-GDGA 584
Score = 48 (22.0 bits), Expect = 7.1e-10, Sum P(2) = 7.1e-10
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 155 ALILAPTRELAIQ 167
A+I+APTREL +Q
Sbjct: 586 AIIMAPTRELCMQ 598
>CGD|CAL0005900 [details] [associations]
symbol:MAK5 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0005900 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 EMBL:AACQ01000094 EMBL:AACQ01000093 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14805
RefSeq:XP_714899.1 RefSeq:XP_714962.1 ProteinModelPortal:Q59ZH9
STRING:Q59ZH9 GeneID:3643358 GeneID:3643454 KEGG:cal:CaO19.11024
KEGG:cal:CaO19.3540 Uniprot:Q59ZH9
Length = 782
Score = 134 (52.2 bits), Expect = 8.0e-10, Sum P(2) = 8.0e-10
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 17 LYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEED 76
L Q FK PT IQ +P AL + KD++G A TGSGKTLA+GIPIL + L N +++
Sbjct: 212 LSQLDFKKPTPIQKETIPIAL-SGKDVIGKATTGSGKTLAYGIPILEKYIQSL-NLIKQN 269
Query: 77 END 79
D
Sbjct: 270 NKD 272
Score = 95 (38.5 bits), Expect = 0.00035, Sum P(3) = 0.00035
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 83 KDIVGAAETGSGKTLAFGIPILTGIVNKL 111
KD++G A TGSGKTLA+GIPIL + L
Sbjct: 235 KDVIGKATTGSGKTLAYGIPILEKYIQSL 263
Score = 43 (20.2 bits), Expect = 8.0e-10, Sum P(2) = 8.0e-10
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 148 KTRNKLYALILAPTRELAIQ 167
K N +I APTRELA Q
Sbjct: 273 KKINHPTGIIFAPTRELAHQ 292
Score = 35 (17.4 bits), Expect = 0.00035, Sum P(3) = 0.00035
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 70 ENPTEEDENDSARKD 84
E PTE++E + ++
Sbjct: 109 EKPTEQEEEEEEEEE 123
>UNIPROTKB|F1NJ62 [details] [associations]
symbol:F1NJ62 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074847 EMBL:AADN02003663 EMBL:AADN02003664
EMBL:AADN02003665 EMBL:AADN02034739 IPI:IPI00571504
Ensembl:ENSGALT00000017692 Uniprot:F1NJ62
Length = 851
Score = 125 (49.1 bits), Expect = 8.1e-10, Sum P(2) = 8.1e-10
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
++ W +P+ +++AL GF PT IQ++ +PSA+ DI+GAAETG L P
Sbjct: 194 VSAWKDLFVPQPVLKALSSLGFSAPTPIQALTLPSAIRDNMDILGAAETGIN-LLTVSFP 252
Query: 61 ILTGIVN 67
+++ I +
Sbjct: 253 VISQITS 259
Score = 53 (23.7 bits), Expect = 8.1e-10, Sum P(2) = 8.1e-10
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 150 RNKLYALILAPTRELAIQ 167
+ L L+L PTRELA+Q
Sbjct: 391 KRPLLGLVLTPTRELAVQ 408
>TAIR|locus:2050715 [details] [associations]
symbol:AT2G45810 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005829
"cytosol" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006417 GO:GO:0006397
GO:GO:0003723 GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC004665 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 OMA:HIDPARF ProtClustDB:CLSN2683443 EMBL:AY039862
EMBL:BT002709 EMBL:AJ010459 IPI:IPI00528597 PIR:T02466 PIR:T51740
RefSeq:NP_182105.1 UniGene:At.46 ProteinModelPortal:Q94BV4
SMR:Q94BV4 IntAct:Q94BV4 STRING:Q94BV4 PaxDb:Q94BV4 PRIDE:Q94BV4
EnsemblPlants:AT2G45810.1 GeneID:819189 KEGG:ath:AT2G45810
GeneFarm:917 TAIR:At2g45810 InParanoid:Q94BV4 PhylomeDB:Q94BV4
Genevestigator:Q94BV4 GermOnline:AT2G45810 Uniprot:Q94BV4
Length = 528
Score = 112 (44.5 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 3 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
E+ + + ++R +Y+KGF+ P+ IQ +P AL DI+ A+ G+GKT AF IP L
Sbjct: 155 EFEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTG-SDILARAKNGTGKTGAFCIPTL 213
Query: 63 TGI 65
I
Sbjct: 214 EKI 216
Score = 61 (26.5 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 142 TTEFVKKTRNKLYALILAPTRELAIQ 167
T E + N + A+IL PTRELA+Q
Sbjct: 212 TLEKIDPENNVIQAVILVPTRELALQ 237
>POMBASE|SPCC1494.06c [details] [associations]
symbol:SPCC1494.06c "ATP-dependent RNA helicase Dbp9
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC1494.06c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14810
HOGENOM:HOG000253015 OMA:TFLMSAT OrthoDB:EOG4DFSWQ PIR:T41007
RefSeq:NP_588531.1 ProteinModelPortal:O60080 SMR:O60080
STRING:O60080 EnsemblFungi:SPCC1494.06c.1 GeneID:2538776
KEGG:spo:SPCC1494.06c NextBio:20799959 Uniprot:O60080
Length = 595
Score = 121 (47.7 bits), Expect = 8.5e-10, Sum P(2) = 8.5e-10
Identities = 27/56 (48%), Positives = 37/56 (66%)
Query: 7 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
FN+ + RA+++ F+ PT +QS +P AL KD+V A TGSGKT A+ IPIL
Sbjct: 19 FNLDPRLQRAIHKCEFEKPTSVQSETIPLALEG-KDLVAQARTGSGKTAAYLIPIL 73
Score = 53 (23.7 bits), Expect = 8.5e-10, Sum P(2) = 8.5e-10
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 146 VKKTRNKLYALILAPTRELAIQ 167
+ + + ++AL+L PTRELA Q
Sbjct: 82 IDENQRGIFALLLVPTRELAQQ 103
>TAIR|locus:2098886 [details] [associations]
symbol:AT3G61240 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005829
"cytosol" evidence=RCA] [GO:0009165 "nucleotide biosynthetic
process" evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006417 GO:GO:0006397 GO:GO:0003723
EMBL:AL137898 GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
EMBL:AJ010464 EMBL:AY120712 EMBL:BT000038 IPI:IPI00548726
PIR:T47916 PIR:T51743 RefSeq:NP_191683.1 RefSeq:NP_974472.1
UniGene:At.20236 ProteinModelPortal:Q9M2E0 SMR:Q9M2E0 STRING:Q9M2E0
PaxDb:Q9M2E0 PRIDE:Q9M2E0 EnsemblPlants:AT3G61240.1
EnsemblPlants:AT3G61240.2 GeneID:825296 KEGG:ath:AT3G61240
GeneFarm:928 TAIR:At3g61240 InParanoid:Q9M2E0 OMA:PLAMDQR
PhylomeDB:Q9M2E0 ProtClustDB:CLSN2683443 Genevestigator:Q9M2E0
GermOnline:AT3G61240 Uniprot:Q9M2E0
Length = 498
Score = 113 (44.8 bits), Expect = 8.9e-10, Sum P(2) = 8.9e-10
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 3 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
E+ + + +++ +Y+KGF+ P+ IQ +P AL DI+ A+ G+GKT AF IP+L
Sbjct: 125 EFEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTG-SDILARAKNGTGKTGAFCIPVL 183
Query: 63 TGI 65
I
Sbjct: 184 EKI 186
Score = 59 (25.8 bits), Expect = 8.9e-10, Sum P(2) = 8.9e-10
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 144 EFVKKTRNKLYALILAPTRELAIQ 167
E + N + A+IL PTRELA+Q
Sbjct: 184 EKIDPNNNVIQAMILVPTRELALQ 207
>UNIPROTKB|I3LJA0 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:FP565631 EMBL:FP312903 Ensembl:ENSSSCT00000024730
Uniprot:I3LJA0
Length = 507
Score = 119 (46.9 bits), Expect = 8.9e-10, Sum P(2) = 8.9e-10
Identities = 26/70 (37%), Positives = 43/70 (61%)
Query: 6 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65
++ I +++ + GF+ PT IQ +P +L ++++ +A TGSGKTLAF IPIL
Sbjct: 77 EYKISSRLLQNILDAGFQLPTPIQMQAIP-VMLHGRELLASAPTGSGKTLAFSIPILM-- 133
Query: 66 VNKLENPTEE 75
+L+ PT +
Sbjct: 134 --QLKQPTNK 141
Score = 53 (23.7 bits), Expect = 8.9e-10, Sum P(2) = 8.9e-10
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 146 VKKTRNKLY-ALILAPTRELAIQ 167
+K+ NK + AL+++PTRELA Q
Sbjct: 135 LKQPTNKGFRALVISPTRELASQ 157
>POMBASE|SPAC1093.05 [details] [associations]
symbol:SPAC1093.05 "ATP-dependent RNA helicase Hca4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1093.05 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
OMA:MFERKNQ OrthoDB:EOG4R53B0 PIR:T50068 RefSeq:NP_594652.1
ProteinModelPortal:Q9UTP9 SMR:Q9UTP9 STRING:Q9UTP9
EnsemblFungi:SPAC1093.05.1 GeneID:2541630 KEGG:spo:SPAC1093.05
NextBio:20802723 Uniprot:Q9UTP9
Length = 735
Score = 122 (48.0 bits), Expect = 9.1e-10, Sum P(2) = 9.1e-10
Identities = 28/53 (52%), Positives = 36/53 (67%)
Query: 16 ALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 68
AL F T T+IQ +PSAL R DI+GAA+TGSGKTLAF +P++ + K
Sbjct: 53 ALKNAHFITLTEIQKQCIPSALKGR-DILGAAKTGSGKTLAFIVPLIENLYRK 104
Score = 54 (24.1 bits), Expect = 9.1e-10, Sum P(2) = 9.1e-10
Identities = 11/15 (73%), Positives = 14/15 (93%)
Query: 153 LYALILAPTRELAIQ 167
L AL+++PTRELAIQ
Sbjct: 112 LGALVISPTRELAIQ 126
>TAIR|locus:2087852 [details] [associations]
symbol:PMH2 "putative mitochondrial RNA helicase 2"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
Uniprot:Q9LUW5
Length = 616
Score = 122 (48.0 bits), Expect = 9.3e-10, Sum P(2) = 9.3e-10
Identities = 28/57 (49%), Positives = 38/57 (66%)
Query: 10 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66
PE I++AL KG + IQ V+ A+ R D++G A TG+GKTLAFGIPI+ I+
Sbjct: 113 PE-IVKALSSKGIEKLFPIQKAVLEPAMEGR-DMIGRARTGTGKTLAFGIPIIDKII 167
Score = 91 (37.1 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 44 VGAAETGSGKTLAF---GI-P-ILTGIVNK-LEN--PTEEDENDSAR--KDIVGAAETGS 93
VG +E+ G LA GI P I+ + +K +E P ++ + A +D++G A TG+
Sbjct: 93 VGDSESVGGDGLAISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGT 152
Query: 94 GKTLAFGIPILTGIV 108
GKTLAFGIPI+ I+
Sbjct: 153 GKTLAFGIPIIDKII 167
Score = 52 (23.4 bits), Expect = 9.3e-10, Sum P(2) = 9.3e-10
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 150 RNKLYALILAPTRELAIQ 167
RN L L+LAPTRELA Q
Sbjct: 177 RNPL-CLVLAPTRELARQ 193
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 124 (48.7 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
M+++ + I+ +L + G+ PT IQ +P + R DIVG A+TG+GKTLAF P
Sbjct: 6 MSDFQSLGLTGRILTSLTKAGYTAPTPIQEQAIPLVIQGR-DIVGLAQTGTGKTLAFAAP 64
Query: 61 IL 62
IL
Sbjct: 65 IL 66
Score = 46 (21.3 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 10/12 (83%), Positives = 11/12 (91%)
Query: 156 LILAPTRELAIQ 167
L+LAPTRELA Q
Sbjct: 84 LVLAPTRELAGQ 95
>UNIPROTKB|J3QKZ9 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 EMBL:AC016876 HGNC:HGNC:3282 ChiTaRS:EIF4A1
Ensembl:ENST00000582169 Uniprot:J3QKZ9
Length = 135
Score = 101 (40.6 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 21/59 (35%), Positives = 36/59 (61%)
Query: 8 NIPETIIRALYQKGFKTPTKIQSM-VMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65
N+ E+++R +Y GF+ P+ IQ ++P + D++ A++G+GKT F I IL I
Sbjct: 2 NLSESLLRGIYAYGFEKPSAIQQRAILPC--IKGYDVIAQAQSGTGKTATFAISILQQI 58
Score = 51 (23.0 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 11/13 (84%), Positives = 12/13 (92%)
Query: 155 ALILAPTRELAIQ 167
AL+LAPTRELA Q
Sbjct: 67 ALVLAPTRELAQQ 79
>UNIPROTKB|I3L2Z3 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR011545 Pfam:PF00270 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
EMBL:AC087741 InterPro:IPR014014 PROSITE:PS51195 HGNC:HGNC:18683
ChiTaRS:EIF4A3 Ensembl:ENST00000573272 Bgee:I3L2Z3 Uniprot:I3L2Z3
Length = 122
Score = 94 (38.1 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 11 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
E ++R +Y GF+ P+ IQ + + R D++ +++G+GKT F I +L
Sbjct: 47 EDLLRGIYAYGFEKPSAIQQRAIKQIIKGR-DVIAQSQSGTGKTATFSISVL 97
Score = 58 (25.5 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 12/13 (92%), Positives = 13/13 (100%)
Query: 155 ALILAPTRELAIQ 167
ALILAPTRELA+Q
Sbjct: 109 ALILAPTRELAVQ 121
>UNIPROTKB|A4QSS5 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase DBP2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
KEGG:mgr:MGG_16901 Uniprot:A4QSS5
Length = 548
Score = 118 (46.6 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 26/56 (46%), Positives = 34/56 (60%)
Query: 10 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65
P ++ + +GF PT IQS P AL R D+VG AETGSGKTL + +P + I
Sbjct: 133 PRYVMDEVKAQGFPAPTAIQSQGWPMALSGR-DVVGIAETGSGKTLTYCLPAIVHI 187
Score = 54 (24.1 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 11/12 (91%), Positives = 12/12 (100%)
Query: 156 LILAPTRELAIQ 167
LILAPTRELA+Q
Sbjct: 202 LILAPTRELAVQ 213
>MGI|MGI:1915098 [details] [associations]
symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 55"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915098 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
GeneTree:ENSGT00550000074969 OMA:CACVEYW EMBL:AK129402
EMBL:AK033741 EMBL:AK154422 EMBL:BC117786 EMBL:BC117787
IPI:IPI00453808 RefSeq:NP_080685.2 UniGene:Mm.281601
ProteinModelPortal:Q6ZPL9 SMR:Q6ZPL9 IntAct:Q6ZPL9 STRING:Q6ZPL9
PRIDE:Q6ZPL9 Ensembl:ENSMUST00000071057 GeneID:67848 KEGG:mmu:67848
UCSC:uc008zqc.2 InParanoid:Q6ZPL9 NextBio:325707 Bgee:Q6ZPL9
CleanEx:MM_DDX55 Genevestigator:Q6ZPL9
GermOnline:ENSMUSG00000029389 Uniprot:Q6ZPL9
Length = 600
Score = 114 (45.2 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 27/69 (39%), Positives = 38/69 (55%)
Query: 4 WVKFNIP--ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 61
W +P ++ AL + GF T +QS +P + KD+ A TGSGKTLAF IPI
Sbjct: 9 WESLQVPLHPRVLGALRELGFPHMTPVQSATIP-LFMKNKDVAAEAVTGSGKTLAFVIPI 67
Query: 62 LTGIVNKLE 70
L ++ + E
Sbjct: 68 LEILLRREE 76
Score = 59 (25.8 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 147 KKTRNKLYALILAPTRELAIQ 167
K +N++ A+++ PTRELAIQ
Sbjct: 77 KLKKNQVGAIVITPTRELAIQ 97
>FB|FBgn0004419 [details] [associations]
symbol:me31B "maternal expression at 31B" species:7227
"Drosophila melanogaster" [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS;NAS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IDA] [GO:0033962 "cytoplasmic mRNA
processing body assembly" evidence=IMP] [GO:0005875 "microtubule
associated complex" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007095 "mitotic G2 DNA damage checkpoint"
evidence=IGI] [GO:0043186 "P granule" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005875 GO:GO:0007095 EMBL:AE014134 GO:GO:0003723
GO:GO:0000932 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033962 GO:GO:0004004 eggNOG:COG0513
GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 EMBL:M59926 EMBL:AY051663
PIR:A39157 RefSeq:NP_523533.2 RefSeq:NP_723539.1 UniGene:Dm.2770
ProteinModelPortal:P23128 SMR:P23128 IntAct:P23128 MINT:MINT-769276
STRING:P23128 PaxDb:P23128 PRIDE:P23128 EnsemblMetazoa:FBtr0079975
GeneID:34364 KEGG:dme:Dmel_CG4916 CTD:34364 FlyBase:FBgn0004419
InParanoid:P23128 OrthoDB:EOG45QFVG PhylomeDB:P23128 ChiTaRS:me31B
GenomeRNAi:34364 NextBio:788139 Bgee:P23128 GermOnline:CG4916
Uniprot:P23128
Length = 459
Score = 110 (43.8 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 22/63 (34%), Positives = 41/63 (65%)
Query: 3 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
E+ +F + ++ +++KG++ P+ IQ +P AL + KD++ A+ G+GKT A+ IP+L
Sbjct: 59 EFEEFCLKRELLMGIFEKGWERPSPIQEAAIPIAL-SGKDVLARAKNGTGKTGAYCIPVL 117
Query: 63 TGI 65
I
Sbjct: 118 EQI 120
Score = 60 (26.2 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 144 EFVKKTRNKLYALILAPTRELAIQ 167
E + T++ + AL++ PTRELA+Q
Sbjct: 118 EQIDPTKDYIQALVMVPTRELALQ 141
>DICTYBASE|DDB_G0270396 [details] [associations]
symbol:ddx49 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0270396 GO:GO:0005524 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:FRNLCAI
RefSeq:XP_646762.1 HSSP:P60842 ProteinModelPortal:Q55BR9
PRIDE:Q55BR9 EnsemblProtists:DDB0234206 GeneID:8617735
KEGG:ddi:DDB_G0270396 ProtClustDB:CLSZ2846935 Uniprot:Q55BR9
Length = 508
Score = 116 (45.9 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 19 QKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
Q GFK P+ IQ+ +P L R DI+ +A+TGSGKT +F IPIL
Sbjct: 21 QLGFKAPSNIQANTIPEILKGR-DIIASAKTGSGKTASFAIPIL 63
Score = 55 (24.4 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 10/15 (66%), Positives = 14/15 (93%)
Query: 153 LYALILAPTRELAIQ 167
++A+IL PTRELA+Q
Sbjct: 73 VFAVILTPTRELAVQ 87
Score = 39 (18.8 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 57 FGIPILTGIVNKLENPTEEDENDSARKDIVGAAET-GSGK 95
+ + + G++NKL+ P+ + +K + A +T SGK
Sbjct: 256 YAVEAVKGMLNKLDIPSVSLHSFLDQKSRLAALKTFKSGK 295
Score = 34 (17.0 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 99 FGIPILTGIVNKLENPT 115
+ + + G++NKL+ P+
Sbjct: 256 YAVEAVKGMLNKLDIPS 272
>GENEDB_PFALCIPARUM|PFL1310c [details] [associations]
symbol:PFL1310c "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0016070 "RNA
metabolic process" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014188 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_001350668.1
ProteinModelPortal:Q8I5E7 PRIDE:Q8I5E7
EnsemblProtists:PFL1310c:mRNA GeneID:811314 KEGG:pfa:PFL1310c
EuPathDB:PlasmoDB:PF3D7_1227100 ProtClustDB:CLSZ2500975
Uniprot:Q8I5E7
Length = 742
Score = 124 (48.7 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 33/86 (38%), Positives = 46/86 (53%)
Query: 11 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 70
E+I+ L K F PT IQ + P AL + KD++G AETGSGKTLAF +P I+ K +
Sbjct: 297 ESILNYLNNK-FSEPTAIQKITWPIAL-SGKDLIGVAETGSGKTLAFVLPCFMHIL-KHK 353
Query: 71 NPTEEDENDSARKDIVGAAETGSGKT 96
+ + N+ + GKT
Sbjct: 354 EIIQNNNNNKQTNQNNNLQQEQEGKT 379
Score = 51 (23.0 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 154 YALILAPTRELAIQ 167
Y LIL PTREL +Q
Sbjct: 429 YGLILLPTRELCLQ 442
>UNIPROTKB|Q8EE19 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 120 (47.3 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 21/57 (36%), Positives = 42/57 (73%)
Query: 6 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
+ + +++A+ + G+++PT IQ+ +PS +LA K+++ AA+TG+GKT +F +P+L
Sbjct: 5 QLGLHSALVKAVTELGYQSPTPIQTQAIPS-ILAGKNVLAAAQTGTGKTASFVLPLL 60
Score = 50 (22.7 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 148 KTRNK-LYALILAPTRELAIQ 167
K R K + ++IL PTRELA+Q
Sbjct: 68 KIRPKRVRSIILTPTRELALQ 88
>TIGR_CMR|SO_2571 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 120 (47.3 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 21/57 (36%), Positives = 42/57 (73%)
Query: 6 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
+ + +++A+ + G+++PT IQ+ +PS +LA K+++ AA+TG+GKT +F +P+L
Sbjct: 5 QLGLHSALVKAVTELGYQSPTPIQTQAIPS-ILAGKNVLAAAQTGTGKTASFVLPLL 60
Score = 50 (22.7 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 148 KTRNK-LYALILAPTRELAIQ 167
K R K + ++IL PTRELA+Q
Sbjct: 68 KIRPKRVRSIILTPTRELALQ 88
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 120 (47.3 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 25/60 (41%), Positives = 40/60 (66%)
Query: 13 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENP 72
I+ AL G++ P+ IQ+ +P LL +D++G A+TGSGKT AF +P+L + +L+ P
Sbjct: 17 ILEALNDLGYEKPSPIQAECIPH-LLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAP 75
Score = 53 (23.7 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 10/12 (83%), Positives = 12/12 (100%)
Query: 156 LILAPTRELAIQ 167
L+LAPTRELA+Q
Sbjct: 78 LVLAPTRELAVQ 89
>SGD|S000002651 [details] [associations]
symbol:PRP28 "RNA helicase in the DEAD-box family"
species:4932 "Saccharomyces cerevisiae" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005681 "spliceosomal
complex" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0000354 "cis
assembly of pre-catalytic spliceosome" evidence=TAS] [GO:0005682
"U5 snRNP" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002651 GO:GO:0005524
GO:GO:0005737 EMBL:BK006938 GO:GO:0005681 GO:GO:0005682
GO:GO:0003676 EMBL:Z49701 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000354
RefSeq:NP_010529.3 GeneID:851830 KEGG:sce:YDR243C KO:K12858
HOGENOM:HOG000268796 OrthoDB:EOG4KPXK0 EMBL:X56934 PIR:A39624
RefSeq:NP_878065.3 ProteinModelPortal:P23394 SMR:P23394
DIP:DIP-6324N IntAct:P23394 MINT:MINT-599541 STRING:P23394
PaxDb:P23394 PeptideAtlas:P23394 EnsemblFungi:YDR243C
GeneID:1466436 KEGG:sce:YDR246W-A CYGD:YDR243c OMA:HEMNERD
NextBio:969715 Genevestigator:P23394 GermOnline:YDR243C
Uniprot:P23394
Length = 588
Score = 124 (48.7 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 28/66 (42%), Positives = 41/66 (62%)
Query: 1 MAEWVKFNI-PETIIRALYQK-GFKTPTKIQSMVMPSALLAR--KDIVGAAETGSGKTLA 56
+ W + NI P ++R + Q+ F +PT IQ + +P+ + +D +G A TGSGKTLA
Sbjct: 171 LRNWEELNIIPRDLLRVIIQELRFPSPTPIQRITIPNVCNMKQYRDFLGVASTGSGKTLA 230
Query: 57 FGIPIL 62
F IPIL
Sbjct: 231 FVIPIL 236
Score = 48 (22.0 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 11/13 (84%), Positives = 11/13 (84%)
Query: 155 ALILAPTRELAIQ 167
ALILAPTREL Q
Sbjct: 257 ALILAPTRELVQQ 269
>UNIPROTKB|E2R316 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 Ensembl:ENSCAFT00000035837 Uniprot:E2R316
Length = 483
Score = 110 (43.8 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 13 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 70
++ AL Q GF T +QS +P + KD+ A TGSGKTLAF IPIL ++ + E
Sbjct: 20 VLGALGQLGFPHMTPVQSATIP-LFMKNKDVAAEAVTGSGKTLAFVIPILEILLRREE 76
Score = 60 (26.2 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 147 KKTRNKLYALILAPTRELAIQ 167
K +N++ A+I+ PTRELAIQ
Sbjct: 77 KLKKNQVGAIIITPTRELAIQ 97
>CGD|CAL0004220 [details] [associations]
symbol:orf19.3393 species:5476 "Candida albicans" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0033680 "ATP-dependent DNA/RNA helicase activity" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0004220
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL033391 EMBL:AACQ01000064
EMBL:AACQ01000065 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_716643.1
RefSeq:XP_716703.1 ProteinModelPortal:Q5A4P9 STRING:Q5A4P9
GeneID:3641598 GeneID:3641657 KEGG:cal:CaO19.10896
KEGG:cal:CaO19.3393 KO:K14810 Uniprot:Q5A4P9
Length = 574
Score = 149 (57.5 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 39/108 (36%), Positives = 55/108 (50%)
Query: 4 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63
W FN+ +++A+ Q GF PT IQS +P AL ++DI+ A TGSGKT A+ IPI
Sbjct: 16 WDSFNLDPRLLQAIDQLGFSNPTLIQSSAIPLALEEKRDIIAKASTGSGKTAAYCIPI-- 73
Query: 64 GIVNKLENPTEEDENDSARKDIVGAAETGSGKTLAFGIPILTGIVNKL 111
VN L +D + I+ S + F +LT NK+
Sbjct: 74 --VNNL---LTDDSAQGIKSIILVPTRELSNQVFQFVEKLLTFSTNKI 116
>UNIPROTKB|Q5A4P9 [details] [associations]
symbol:DBP9 "ATP-dependent RNA helicase DBP9"
species:237561 "Candida albicans SC5314" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0004220 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AL033391 EMBL:AACQ01000064 EMBL:AACQ01000065
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_716643.1 RefSeq:XP_716703.1
ProteinModelPortal:Q5A4P9 STRING:Q5A4P9 GeneID:3641598
GeneID:3641657 KEGG:cal:CaO19.10896 KEGG:cal:CaO19.3393 KO:K14810
Uniprot:Q5A4P9
Length = 574
Score = 149 (57.5 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 39/108 (36%), Positives = 55/108 (50%)
Query: 4 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63
W FN+ +++A+ Q GF PT IQS +P AL ++DI+ A TGSGKT A+ IPI
Sbjct: 16 WDSFNLDPRLLQAIDQLGFSNPTLIQSSAIPLALEEKRDIIAKASTGSGKTAAYCIPI-- 73
Query: 64 GIVNKLENPTEEDENDSARKDIVGAAETGSGKTLAFGIPILTGIVNKL 111
VN L +D + I+ S + F +LT NK+
Sbjct: 74 --VNNL---LTDDSAQGIKSIILVPTRELSNQVFQFVEKLLTFSTNKI 116
>MGI|MGI:1925644 [details] [associations]
symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 52"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1925644 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 EMBL:CH466556 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:11056
GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AK080767 EMBL:AK133545 EMBL:AL645615 EMBL:BC029094
IPI:IPI00336965 RefSeq:NP_084372.2 UniGene:Mm.280544
ProteinModelPortal:Q8K301 SMR:Q8K301 STRING:Q8K301
PhosphoSite:Q8K301 PaxDb:Q8K301 PRIDE:Q8K301
Ensembl:ENSMUST00000049257 GeneID:78394 KEGG:mmu:78394
InParanoid:Q3UZY9 NextBio:348796 Bgee:Q8K301 CleanEx:MM_DDX52
Genevestigator:Q8K301 GermOnline:ENSMUSG00000020677 Uniprot:Q8K301
Length = 598
Score = 119 (46.9 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 26/70 (37%), Positives = 43/70 (61%)
Query: 6 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65
++ I +++ + GF+ PT IQ +P +L ++++ +A TGSGKTLAF IPIL
Sbjct: 170 EYKINSRLLQNILDAGFQVPTPIQMQAIP-VMLHGRELLASAPTGSGKTLAFSIPILM-- 226
Query: 66 VNKLENPTEE 75
+L+ PT +
Sbjct: 227 --QLKQPTNK 234
Score = 53 (23.7 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 146 VKKTRNKLY-ALILAPTRELAIQ 167
+K+ NK + AL+++PTRELA Q
Sbjct: 228 LKQPTNKGFRALVISPTRELASQ 250
>RGD|621743 [details] [associations]
symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 52"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=NAS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:621743
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
CTD:11056 GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AB055628 IPI:IPI00201365 RefSeq:NP_445977.1 UniGene:Rn.18605
ProteinModelPortal:Q99PT0 SMR:Q99PT0 PRIDE:Q99PT0
Ensembl:ENSRNOT00000003600 GeneID:85432 KEGG:rno:85432
InParanoid:Q99PT0 NextBio:617542 Genevestigator:Q99PT0
GermOnline:ENSRNOG00000002612 Uniprot:Q99PT0
Length = 598
Score = 119 (46.9 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 26/70 (37%), Positives = 43/70 (61%)
Query: 6 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65
++ I +++ + GF+ PT IQ +P +L ++++ +A TGSGKTLAF IPIL
Sbjct: 170 EYKISPRLLQNILDAGFQVPTPIQMQAIP-VMLHGRELLASAPTGSGKTLAFSIPILM-- 226
Query: 66 VNKLENPTEE 75
+L+ PT +
Sbjct: 227 --QLKQPTNK 234
Score = 53 (23.7 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 146 VKKTRNKLY-ALILAPTRELAIQ 167
+K+ NK + AL+++PTRELA Q
Sbjct: 228 LKQPTNKGFRALVISPTRELASQ 250
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 117 (46.2 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 10 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65
P+ ++ + + GF PT IQS P A+ R D++G AETGSGKTL++ +P + +
Sbjct: 107 PDYVLEEVKKAGFTEPTPIQSQGWPMAMKGR-DLIGIAETGSGKTLSYLLPAIVHV 161
Score = 53 (23.7 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 10/12 (83%), Positives = 12/12 (100%)
Query: 156 LILAPTRELAIQ 167
L+LAPTRELA+Q
Sbjct: 176 LVLAPTRELAVQ 187
>UNIPROTKB|P0A8J8 [details] [associations]
symbol:rhlB "RhlB" species:83333 "Escherichia coli K-12"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006401 "RNA
catabolic process" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0006401 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:M87049 GO:GO:0004004 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:M83316 EMBL:X56310
PIR:G65181 RefSeq:NP_418227.1 RefSeq:YP_491659.1
ProteinModelPortal:P0A8J8 SMR:P0A8J8 DIP:DIP-35644N IntAct:P0A8J8
PaxDb:P0A8J8 PRIDE:P0A8J8 EnsemblBacteria:EBESCT00000001927
EnsemblBacteria:EBESCT00000015978 GeneID:12934326 GeneID:948290
KEGG:ecj:Y75_p3395 KEGG:eco:b3780 PATRIC:32123051 EchoBASE:EB0837
EcoGene:EG10844 HOGENOM:HOG000268807 KO:K03732 OMA:HIDGIKY
ProtClustDB:PRK04837 BioCyc:EcoCyc:EG10844-MONOMER
BioCyc:ECOL316407:JW3753-MONOMER Genevestigator:P0A8J8
Uniprot:P0A8J8
Length = 421
Score = 110 (43.8 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 7 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 57
F + ++ AL +KGF T IQ++ +P L R D+ G A+TG+GKT+AF
Sbjct: 14 FALHPKVVEALEKKGFHNCTPIQALALPLTLAGR-DVAGQAQTGTGKTMAF 63
Score = 58 (25.5 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 12/17 (70%), Positives = 15/17 (88%)
Query: 151 NKLYALILAPTRELAIQ 167
N+ ALI+APTRELA+Q
Sbjct: 83 NQPRALIMAPTRELAVQ 99
>CGD|CAL0005460 [details] [associations]
symbol:DBP3 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000464 "endonucleolytic cleavage in
ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005460
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 EMBL:AACQ01000001
EMBL:AACQ01000002 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_723365.1 RefSeq:XP_723554.1
ProteinModelPortal:Q5APT8 STRING:Q5APT8 GeneID:3634868
GeneID:3635070 KEGG:cal:CaO19.12334 KEGG:cal:CaO19.4870 KO:K14811
Uniprot:Q5APT8
Length = 564
Score = 126 (49.4 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 25/45 (55%), Positives = 32/45 (71%)
Query: 22 FKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66
F PT IQS+ P LL+ KD++G AETGSGKT AFG+P + I+
Sbjct: 173 FDKPTPIQSVSWPF-LLSGKDVIGVAETGSGKTFAFGVPAINNII 216
Score = 97 (39.2 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 83 KDIVGAAETGSGKTLAFGIPILTGIV 108
KD++G AETGSGKT AFG+P + I+
Sbjct: 191 KDVIGVAETGSGKTFAFGVPAINNII 216
Score = 45 (20.9 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 153 LYALILAPTRELAIQ 167
L L ++PTRELA+Q
Sbjct: 224 LSVLCISPTRELALQ 238
>UNIPROTKB|A4RGU2 [details] [associations]
symbol:DBP4 "ATP-dependent RNA helicase DBP4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 GO:GO:0043581 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM001232 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 OrthoDB:EOG4R53B0
RefSeq:XP_003715000.1 ProteinModelPortal:A4RGU2 STRING:A4RGU2
EnsemblFungi:MGG_08049T0 GeneID:2678339 KEGG:mgr:MGG_08049
Uniprot:A4RGU2
Length = 798
Score = 115 (45.5 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 26/54 (48%), Positives = 36/54 (66%)
Query: 9 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
+ E + + F+T T IQ+ +P AL R DI+GAA+TGSGKTLAF +P+L
Sbjct: 56 LSEPTAKGVRDSHFETLTDIQARAIPLALKGR-DILGAAKTGSGKTLAFLVPLL 108
Score = 60 (26.2 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 12/16 (75%), Positives = 15/16 (93%)
Query: 152 KLYALILAPTRELAIQ 167
KL AL+L+PTRELA+Q
Sbjct: 121 KLGALVLSPTRELAVQ 136
>UNIPROTKB|Q9KLE2 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 118 (46.6 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 13 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
I+ AL + GF +PT IQ+ +P LL +D +G A+TG+GKT AF +P+L
Sbjct: 37 ILSALTEMGFVSPTPIQAAAIP-VLLEGRDALGKAQTGTGKTAAFSLPLL 85
Score = 55 (24.4 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 11/16 (68%), Positives = 14/16 (87%)
Query: 152 KLYALILAPTRELAIQ 167
K A+++APTRELAIQ
Sbjct: 94 KPQAIVMAPTRELAIQ 109
>TIGR_CMR|VC_A0804 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0016070 "RNA metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 118 (46.6 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 13 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
I+ AL + GF +PT IQ+ +P LL +D +G A+TG+GKT AF +P+L
Sbjct: 37 ILSALTEMGFVSPTPIQAAAIP-VLLEGRDALGKAQTGTGKTAAFSLPLL 85
Score = 55 (24.4 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 11/16 (68%), Positives = 14/16 (87%)
Query: 152 KLYALILAPTRELAIQ 167
K A+++APTRELAIQ
Sbjct: 94 KPQAIVMAPTRELAIQ 109
>FB|FBgn0015331 [details] [associations]
symbol:abs "abstrakt" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=NAS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0030010
"establishment of cell polarity" evidence=NAS] [GO:0007399 "nervous
system development" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0009653 "anatomical structure morphogenesis"
evidence=NAS] [GO:0006915 "apoptotic process" evidence=NAS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 EMBL:AF212866 EMBL:AF187729
EMBL:AY051752 RefSeq:NP_524220.1 UniGene:Dm.3300
ProteinModelPortal:Q9V3C0 SMR:Q9V3C0 DIP:DIP-21861N IntAct:Q9V3C0
MINT:MINT-341079 STRING:Q9V3C0 PaxDb:Q9V3C0 PRIDE:Q9V3C0
EnsemblMetazoa:FBtr0078967 GeneID:40530 KEGG:dme:Dmel_CG14637
UCSC:CG14637-RA CTD:40530 FlyBase:FBgn0015331 InParanoid:Q9V3C0
OMA:KDQEERS OrthoDB:EOG4KWH7Z PhylomeDB:Q9V3C0 GenomeRNAi:40530
NextBio:819209 Bgee:Q9V3C0 GermOnline:CG14637 Uniprot:Q9V3C0
Length = 619
Score = 127 (49.8 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 6 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT-G 64
+ P+ I+ L KG K PT IQ +P+ +LA +D++G A TGSGKTL F +P++
Sbjct: 181 EMKFPKGILNGLAAKGIKNPTPIQVQGLPT-VLAGRDLIGIAFTGSGKTLVFVLPVIMFA 239
Query: 65 IVNKLENPTEEDE 77
+ + P E +E
Sbjct: 240 LEQEYSLPFERNE 252
Score = 45 (20.9 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 154 YALILAPTRELAIQ 167
Y LI+ P+RELA Q
Sbjct: 255 YGLIICPSRELAKQ 268
>RGD|2324094 [details] [associations]
symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 55"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:2324094
GO:GO:0005524 GO:GO:0003723 EMBL:CH473973 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 CTD:57696 KO:K14809
OrthoDB:EOG4WH8KN GeneTree:ENSGT00550000074969 IPI:IPI00370890
RefSeq:NP_001258255.1 UniGene:Rn.209289 Ensembl:ENSRNOT00000001387
GeneID:100362764 KEGG:rno:100362764 UCSC:RGD:2324094 Uniprot:D3ZX56
Length = 600
Score = 113 (44.8 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 27/69 (39%), Positives = 38/69 (55%)
Query: 4 WVKFNIP--ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 61
W +P ++ AL + GF T +QS +P + KD+ A TGSGKTLAF IPI
Sbjct: 9 WESLQVPLHPLVLGALRELGFLHMTPVQSATIP-LFMRNKDVAAEAVTGSGKTLAFVIPI 67
Query: 62 LTGIVNKLE 70
L ++ + E
Sbjct: 68 LEILLRREE 76
Score = 59 (25.8 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 147 KKTRNKLYALILAPTRELAIQ 167
K +N++ A+++ PTRELAIQ
Sbjct: 77 KLKKNQVGAIVITPTRELAIQ 97
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 124 (48.7 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 26/66 (39%), Positives = 42/66 (63%)
Query: 3 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
E+ + P+ ++ + ++GF PT IQ+ P A+ R D+VG A+TGSGKTLA+ +P +
Sbjct: 158 EFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGR-DLVGVAQTGSGKTLAYVLPAV 216
Query: 63 TGIVNK 68
I N+
Sbjct: 217 VHINNQ 222
Score = 51 (23.0 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 11/13 (84%), Positives = 12/13 (92%)
Query: 155 ALILAPTRELAIQ 167
AL+LAPTRELA Q
Sbjct: 233 ALVLAPTRELAQQ 245
>UNIPROTKB|I3LQ10 [details] [associations]
symbol:LOC100626268 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 Ensembl:ENSSSCT00000028964 OMA:RYLVALC
Uniprot:I3LQ10
Length = 684
Score = 127 (49.8 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 8 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67
N+ +++A+ GFK PT IQ +P LL KDI A TG+GKT AF +P+L ++
Sbjct: 217 NLSRPLLKAITVMGFKQPTPIQKACIPVGLLG-KDICACAATGTGKTAAFALPVLERLIY 275
Query: 68 K 68
K
Sbjct: 276 K 276
Score = 46 (21.3 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 156 LILAPTRELAIQ 167
L+L PTREL IQ
Sbjct: 286 LVLVPTRELGIQ 297
>MGI|MGI:2385884 [details] [associations]
symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 27"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2385884 GO:GO:0005524
GO:GO:0005634 EMBL:CH466551 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH OrthoDB:EOG4NVZJV
EMBL:AK134274 EMBL:AK138442 EMBL:AL591711 EMBL:BC011321
EMBL:BC024730 EMBL:BC026381 IPI:IPI00122038 IPI:IPI00230236
RefSeq:NP_694705.2 UniGene:Mm.295031 ProteinModelPortal:Q921N6
SMR:Q921N6 PhosphoSite:Q921N6 PaxDb:Q921N6 PRIDE:Q921N6
Ensembl:ENSMUST00000018143 Ensembl:ENSMUST00000150571 GeneID:228889
KEGG:mmu:228889 UCSC:uc008nza.1 InParanoid:Q3UUG2 NextBio:379240
Bgee:Q921N6 CleanEx:MM_DDX27 Genevestigator:Q921N6
GermOnline:ENSMUSG00000017999 Uniprot:Q921N6
Length = 760
Score = 128 (50.1 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 8 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67
N+ +++A+ GFK PT IQ +P LL KDI A TG+GKT AF +P+L ++
Sbjct: 190 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLG-KDICACAATGTGKTAAFALPVLERLIY 248
Query: 68 K 68
K
Sbjct: 249 K 249
Score = 46 (21.3 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 156 LILAPTRELAIQ 167
L+L PTREL IQ
Sbjct: 259 LVLVPTRELGIQ 270
>UNIPROTKB|A1A4H6 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:BC126497 IPI:IPI00734460 RefSeq:NP_001073740.1 UniGene:Bt.2644
ProteinModelPortal:A1A4H6 PRIDE:A1A4H6 Ensembl:ENSBTAT00000057089
GeneID:514567 KEGG:bta:514567 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH NextBio:20871404
Uniprot:A1A4H6
Length = 765
Score = 128 (50.1 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 8 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67
N+ +++A+ GFK PT IQ +P LL KDI A TG+GKT AF +P+L ++
Sbjct: 193 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLG-KDICACAATGTGKTAAFALPVLERLIY 251
Query: 68 K 68
K
Sbjct: 252 K 252
Score = 46 (21.3 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 156 LILAPTRELAIQ 167
L+L PTREL IQ
Sbjct: 262 LVLVPTRELGIQ 273
>UNIPROTKB|F1Q073 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AAEX03013992
Ensembl:ENSCAFT00000018089 Uniprot:F1Q073
Length = 767
Score = 128 (50.1 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 8 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67
N+ +++A+ GFK PT IQ +P LL KDI A TG+GKT AF +P+L ++
Sbjct: 193 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLG-KDICACAATGTGKTAAFALPVLERLIY 251
Query: 68 K 68
K
Sbjct: 252 K 252
Score = 46 (21.3 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 156 LILAPTRELAIQ 167
L+L PTREL IQ
Sbjct: 262 LVLVPTRELGIQ 273
>UNIPROTKB|J9P9C6 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AAEX03013992
Ensembl:ENSCAFT00000046251 Uniprot:J9P9C6
Length = 788
Score = 128 (50.1 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 8 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67
N+ +++A+ GFK PT IQ +P LL KDI A TG+GKT AF +P+L ++
Sbjct: 214 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLG-KDICACAATGTGKTAAFALPVLERLIY 272
Query: 68 K 68
K
Sbjct: 273 K 273
Score = 46 (21.3 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 156 LILAPTRELAIQ 167
L+L PTREL IQ
Sbjct: 283 LVLVPTRELGIQ 294
>UNIPROTKB|A8MTP9 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000242486
HOVERGEN:HBG051332 EMBL:AC091199 HGNC:HGNC:20038
PharmGKB:PA134904836 ChiTaRS:DDX52 NextBio:42007 IPI:IPI00394982
ProteinModelPortal:A8MTP9 SMR:A8MTP9 STRING:A8MTP9 PRIDE:A8MTP9
Ensembl:ENST00000394367 ArrayExpress:A8MTP9 Bgee:A8MTP9
Uniprot:A8MTP9
Length = 491
Score = 115 (45.5 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 23/57 (40%), Positives = 37/57 (64%)
Query: 6 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
++ I +++ + GF+ PT IQ +P +L ++++ +A TGSGKTLAF IPIL
Sbjct: 61 EYKINSRLLQNILDAGFQMPTPIQMQAIP-VMLHGRELLASAPTGSGKTLAFSIPIL 116
Score = 54 (24.1 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 146 VKKTRNKLY-ALILAPTRELAIQ 167
+K+ NK + ALI++PTRELA Q
Sbjct: 119 LKQPANKGFRALIISPTRELASQ 141
>UNIPROTKB|Q96GQ7 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
CTD:55661 HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH EMBL:AY044431
EMBL:AF336851 EMBL:AL049766 EMBL:AL357560 EMBL:BC009304
EMBL:BC011927 EMBL:BC016060 EMBL:BC126287 EMBL:BC130275
EMBL:BC144125 EMBL:AK022979 EMBL:AK000603 EMBL:AF193054
EMBL:AF161377 IPI:IPI00293078 RefSeq:NP_060365.7 UniGene:Hs.129261
UniGene:Hs.65234 ProteinModelPortal:Q96GQ7 SMR:Q96GQ7 IntAct:Q96GQ7
MINT:MINT-1420816 STRING:Q96GQ7 PhosphoSite:Q96GQ7 DMDM:29427946
SWISS-2DPAGE:Q96GQ7 PaxDb:Q96GQ7 PeptideAtlas:Q96GQ7 PRIDE:Q96GQ7
DNASU:55661 Ensembl:ENST00000371764 GeneID:55661 KEGG:hsa:55661
UCSC:uc002xuh.3 GeneCards:GC20P047835 HGNC:HGNC:15837 HPA:HPA047087
neXtProt:NX_Q96GQ7 PharmGKB:PA27213 InParanoid:Q96GQ7
OrthoDB:EOG4NVZJV PhylomeDB:Q96GQ7 ChiTaRS:DDX27 GenomeRNAi:55661
NextBio:60399 ArrayExpress:Q96GQ7 Bgee:Q96GQ7 CleanEx:HS_DDX27
Genevestigator:Q96GQ7 GermOnline:ENSG00000124228 Uniprot:Q96GQ7
Length = 796
Score = 128 (50.1 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 8 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67
N+ +++A+ GFK PT IQ +P LL KDI A TG+GKT AF +P+L ++
Sbjct: 224 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLG-KDICACAATGTGKTAAFALPVLERLIY 282
Query: 68 K 68
K
Sbjct: 283 K 283
Score = 46 (21.3 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 156 LILAPTRELAIQ 167
L+L PTREL IQ
Sbjct: 293 LVLVPTRELGIQ 304
>UNIPROTKB|J3KSN7 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC112907 HGNC:HGNC:3284 ChiTaRS:EIF4A2 Ensembl:ENST00000498746
Uniprot:J3KSN7
Length = 109
Score = 99 (39.9 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 8 NIPETIIRALYQKGFKTPTKIQSM-VMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
N+ E+++R +Y GF+ P+ IQ ++P + D++ A++G+GKT F I IL
Sbjct: 22 NLKESLLRGIYAYGFEKPSAIQQRAIIPC--IKGYDVIAQAQSGTGKTATFAISIL 75
Score = 51 (23.0 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 11/13 (84%), Positives = 12/13 (92%)
Query: 155 ALILAPTRELAIQ 167
AL+LAPTRELA Q
Sbjct: 87 ALVLAPTRELAQQ 99
>UNIPROTKB|Q8EGU0 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 114 (45.2 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 13 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 68
++ A+ + G++ T++Q V+P AL+ KDI+ A+TG+GKT AF +P+L + K
Sbjct: 12 LLNAITECGYQQLTQVQQQVIPLALVG-KDIMACAQTGTGKTAAFALPVLEQLAAK 66
Score = 54 (24.1 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 153 LYALILAPTRELAIQ 167
L AL++ PTRELAIQ
Sbjct: 73 LRALVMTPTRELAIQ 87
>TIGR_CMR|SO_1501 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 114 (45.2 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 13 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 68
++ A+ + G++ T++Q V+P AL+ KDI+ A+TG+GKT AF +P+L + K
Sbjct: 12 LLNAITECGYQQLTQVQQQVIPLALVG-KDIMACAQTGTGKTAAFALPVLEQLAAK 66
Score = 54 (24.1 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 153 LYALILAPTRELAIQ 167
L AL++ PTRELAIQ
Sbjct: 73 LRALVMTPTRELAIQ 87
>FB|FBgn0001565 [details] [associations]
symbol:Hlc "Helicase" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0022008
EMBL:AE014298 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 EMBL:AF017777 InterPro:IPR014014
PROSITE:PS51195 KO:K14810 GeneTree:ENSGT00550000074946 HSSP:P10081
FlyBase:FBgn0001565 EMBL:AY070624 PIR:T08433 RefSeq:NP_523434.2
UniGene:Dm.2805 SMR:Q9VRI0 STRING:Q9VRI0 EnsemblMetazoa:FBtr0077221
GeneID:33118 KEGG:dme:Dmel_CG1666 UCSC:CG1666-RA CTD:33118
InParanoid:Q9VRI0 OMA:THRIGRA GenomeRNAi:33118 NextBio:781998
Uniprot:Q9VRI0
Length = 560
Score = 129 (50.5 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 6 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65
+ + + I++A+ Q G++ PT IQS +P LL KD+V A TGSGKT + +P++ I
Sbjct: 13 ELELDQRILKAVAQLGWQQPTLIQSTAIP-LLLEGKDVVVRARTGSGKTATYALPLIQKI 71
Query: 66 VNKLENPTEE 75
+N N +E+
Sbjct: 72 LNSKLNASEQ 81
Score = 41 (19.5 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 155 ALILAPTRELAIQ 167
A++LAPT+EL Q
Sbjct: 85 AVVLAPTKELCRQ 97
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 120 (47.3 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 28/65 (43%), Positives = 43/65 (66%)
Query: 10 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKL 69
PE I+RA+ G++ T IQ +P A+ +D++ +A+TG+GKT AF +PIL +V
Sbjct: 10 PE-ILRAISDCGYQKMTPIQQQAIP-AIRRGQDVLASAQTGTGKTAAFALPILQKMV--- 64
Query: 70 ENPTE 74
ENP+E
Sbjct: 65 ENPSE 69
Score = 47 (21.6 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 141 NTTEFVKKTRNKLYALILAPTRELAIQ 167
N +E +K LIL PTRELA Q
Sbjct: 66 NPSETLKSNTR---VLILTPTRELAAQ 89
>POMBASE|SPAC31A2.07c [details] [associations]
symbol:dbp10 "ATP-dependent RNA helicase Dbp10
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC31A2.07c
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OrthoDB:EOG4JWZP1
EMBL:AB027882 PIR:S59645 RefSeq:NP_592919.1
ProteinModelPortal:Q09719 STRING:Q09719 EnsemblFungi:SPAC31A2.07c.1
GeneID:2543197 KEGG:spo:SPAC31A2.07c OMA:FYIPYRP NextBio:20804220
Uniprot:Q09719
Length = 848
Score = 150 (57.9 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 30/61 (49%), Positives = 43/61 (70%)
Query: 11 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 70
+T++RA+++KGFK PT IQ +P LL +D+VG A TGSGKT AF IP++ + + L
Sbjct: 78 QTLLRAIFKKGFKAPTPIQRKTIP-LLLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLA 136
Query: 71 N 71
N
Sbjct: 137 N 137
>TAIR|locus:2081061 [details] [associations]
symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
"vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
Uniprot:Q9SQV1
Length = 1088
Score = 122 (48.0 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 27/52 (51%), Positives = 34/52 (65%)
Query: 9 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
+P I+R L GF +PT IQ+ P AL +R DIV A+TGSGKTL + IP
Sbjct: 442 LPPEILRELLSAGFPSPTPIQAQTWPIALQSR-DIVAIAKTGSGKTLGYLIP 492
Score = 55 (24.4 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 149 TRNKLYALILAPTRELAIQ 167
+RN LILAPTRELA Q
Sbjct: 504 SRNGPTVLILAPTRELATQ 522
>ZFIN|ZDB-GENE-030131-18 [details] [associations]
symbol:si:dkey-156n14.5 "si:dkey-156n14.5"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-18 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
KO:K13178 EMBL:CR626864 IPI:IPI00896916 RefSeq:XP_001923830.1
UniGene:Dr.75535 Ensembl:ENSDART00000129202 GeneID:556764
KEGG:dre:556764 NextBio:20881652 ArrayExpress:F1QBS1 Bgee:F1QBS1
Uniprot:F1QBS1
Length = 671
Score = 125 (49.1 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 27/56 (48%), Positives = 37/56 (66%)
Query: 10 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65
P+ ++ L Q+ FK PT IQ+ P AL R D+VG A+TGSGKTLA+ +P + I
Sbjct: 103 PQYVMDVLLQQNFKEPTAIQAQGFPLALSGR-DMVGIAQTGSGKTLAYLLPAIVHI 157
Score = 47 (21.6 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 10/12 (83%), Positives = 11/12 (91%)
Query: 156 LILAPTRELAIQ 167
L+LAPTRELA Q
Sbjct: 172 LVLAPTRELAQQ 183
>SGD|S000002428 [details] [associations]
symbol:FAL1 "Nucleolar protein required for maturation of 18S
rRNA" species:4932 "Saccharomyces cerevisiae" [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0097078 "FAl1-SGD1 complex" evidence=IPI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002428 GO:GO:0005524
GO:GO:0005730 EMBL:BK006938 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 EMBL:X95966
EMBL:Z49770 GeneTree:ENSGT00680000100003 GO:GO:0000462 KO:K13025
OrthoDB:EOG4HTD1W EMBL:Z74317 EMBL:AY723767 PIR:S54644
RefSeq:NP_010304.3 RefSeq:NP_010309.3 ProteinModelPortal:Q12099
SMR:Q12099 DIP:DIP-4516N IntAct:Q12099 MINT:MINT-503789
STRING:Q12099 PaxDb:Q12099 PeptideAtlas:Q12099 EnsemblFungi:YDR021W
GeneID:851584 GeneID:851590 KEGG:sce:YDR021W KEGG:sce:YDR026C
CYGD:YDR021w KO:K09424 OMA:IFGKQPF NextBio:969055
Genevestigator:Q12099 GermOnline:YDR021W GO:GO:0097078
Uniprot:Q12099
Length = 399
Score = 112 (44.5 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 20/58 (34%), Positives = 38/58 (65%)
Query: 8 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65
N+ + ++R +Y GF+ P+ IQS + + +++ KD++ A++G+GKT F I +L I
Sbjct: 29 NLKDDLLRGIYSYGFEAPSSIQSRAI-TQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
Score = 54 (24.1 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 150 RNKLYALILAPTRELAIQ 167
+ L ALIL+PTRELA Q
Sbjct: 89 KKDLQALILSPTRELASQ 106
>UNIPROTKB|J3QRQ7 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0001701
"in utero embryonic development" evidence=IEA] [GO:0003712
"transcription cofactor activity" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA] [GO:0005516
"calmodulin binding" evidence=IEA] [GO:0007623 "circadian rhythm"
evidence=IEA] [GO:0019899 "enzyme binding" evidence=IEA]
[GO:0045069 "regulation of viral genome replication" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] InterPro:IPR011545 Pfam:PF00270 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 InterPro:IPR014014 PROSITE:PS51195 HGNC:HGNC:2746
ChiTaRS:DDX5 Ensembl:ENST00000577922 Uniprot:J3QRQ7
Length = 212
Score = 108 (43.1 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 8 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65
N P ++ + ++ F PT IQ+ P AL + D+VG A+TGSGKTL++ +P + I
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVAL-SGLDMVGVAQTGSGKTLSYLLPAIVHI 156
Score = 47 (21.6 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 10/12 (83%), Positives = 11/12 (91%)
Query: 156 LILAPTRELAIQ 167
L+LAPTRELA Q
Sbjct: 171 LVLAPTRELAQQ 182
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 121 (47.7 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 27/56 (48%), Positives = 35/56 (62%)
Query: 10 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65
P +++ + GF PT IQS P AL R DI+G A+TGSGKTLAF +P + I
Sbjct: 392 PGYLMKEIIGAGFPNPTPIQSQAWPIALKGR-DIIGLAKTGSGKTLAFLLPSIVHI 446
Score = 52 (23.4 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 10/12 (83%), Positives = 12/12 (100%)
Query: 156 LILAPTRELAIQ 167
L+LAPTRELA+Q
Sbjct: 461 LVLAPTRELALQ 472
>UNIPROTKB|F1N0P2 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 EMBL:DAAA02019036 IPI:IPI00709252
UniGene:Bt.61505 Ensembl:ENSBTAT00000056136 OMA:PLEPKEY
Uniprot:F1N0P2
Length = 392
Score = 115 (45.5 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
MA + + + ++ Q G K PT +Q +P A+L +D +G A+TGSGKT AF +P
Sbjct: 1 MAGFAELGLSSWLVEQCRQMGLKQPTPVQLGCIP-AILEGRDCLGCAKTGSGKTAAFVLP 59
Query: 61 IL 62
IL
Sbjct: 60 IL 61
Score = 50 (22.7 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 153 LYALILAPTRELAIQ 167
++ L+L PTRELA Q
Sbjct: 71 IFCLVLTPTRELAYQ 85
>MGI|MGI:1914192 [details] [associations]
symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914192
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
OrthoDB:EOG4894MF EMBL:AK075864 EMBL:AK019845 EMBL:BC028246
EMBL:BC103776 IPI:IPI00459381 RefSeq:NP_080136.2 UniGene:Mm.44219
ProteinModelPortal:Q8K363 SMR:Q8K363 STRING:Q8K363
PhosphoSite:Q8K363 PaxDb:Q8K363 PRIDE:Q8K363
Ensembl:ENSMUST00000001724 GeneID:66942 KEGG:mmu:66942
InParanoid:Q8K363 NextBio:323084 Bgee:Q8K363 CleanEx:MM_DDX18
Genevestigator:Q8K363 GermOnline:ENSMUSG00000001674 Uniprot:Q8K363
Length = 660
Score = 117 (46.2 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 9 IPETIIRALYQKGFKTPTKIQ-SMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67
+ E ++A+ + GFK T+IQ + P LL +D++ AA+TGSGKTLAF IP++ IV
Sbjct: 176 VNENTLKAIEEMGFKRMTEIQHKSIRP--LLEGRDLLAAAKTGSGKTLAFLIPVIELIV- 232
Query: 68 KLE 70
KL+
Sbjct: 233 KLK 235
Score = 54 (24.1 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 150 RNKLYALILAPTRELAIQ 167
RN LIL+PTRELA+Q
Sbjct: 239 RNGTGVLILSPTRELAMQ 256
>TIGR_CMR|CPS_4097 [details] [associations]
symbol:CPS_4097 "ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K05590
ProtClustDB:PRK11192 RefSeq:YP_270752.2 ProteinModelPortal:Q47WS0
STRING:Q47WS0 PRIDE:Q47WS0 GeneID:3520098 KEGG:cps:CPS_4097
PATRIC:21471063 OMA:YLDKGHF BioCyc:CPSY167879:GI48-4110-MONOMER
Uniprot:Q47WS0
Length = 430
Score = 115 (45.5 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 21/56 (37%), Positives = 39/56 (69%)
Query: 6 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 61
+F++ ++ ++ + G+ PT IQ +V+P A++ KD++ +A TG+GKT AF +PI
Sbjct: 17 QFDLDSELLASINKIGYTKPTSIQELVIPQAMVG-KDVLASAPTGTGKTAAFLLPI 71
Score = 51 (23.0 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 11/12 (91%), Positives = 11/12 (91%)
Query: 156 LILAPTRELAIQ 167
LIL PTRELAIQ
Sbjct: 89 LILTPTRELAIQ 100
>UNIPROTKB|F1P8J6 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 CTD:57696 KO:K14809 GeneTree:ENSGT00550000074969
EMBL:AAEX03014637 RefSeq:XP_543371.2 Ensembl:ENSCAFT00000011945
GeneID:486246 KEGG:cfa:486246 Uniprot:F1P8J6
Length = 599
Score = 110 (43.8 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 13 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 70
++ AL Q GF T +QS +P + KD+ A TGSGKTLAF IPIL ++ + E
Sbjct: 20 VLGALGQLGFPHMTPVQSATIP-LFMKNKDVAAEAVTGSGKTLAFVIPILEILLRREE 76
Score = 60 (26.2 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 147 KKTRNKLYALILAPTRELAIQ 167
K +N++ A+I+ PTRELAIQ
Sbjct: 77 KLKKNQVGAIIITPTRELAIQ 97
>POMBASE|SPAC1F5.10 [details] [associations]
symbol:SPAC1F5.10 "ATP-dependent RNA helicase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC1F5.10 GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K13025 OMA:EDWKFDT
OrthoDB:EOG4HTD1W PIR:T38085 RefSeq:NP_592863.1
ProteinModelPortal:Q10055 SMR:Q10055 PRIDE:Q10055
EnsemblFungi:SPAC1F5.10.1 GeneID:2541602 KEGG:spo:SPAC1F5.10
NextBio:20802696 Uniprot:Q10055
Length = 394
Score = 110 (43.8 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 21/65 (32%), Positives = 39/65 (60%)
Query: 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
++ + + N+ E ++R +Y G++TP+ +QS + R D++ A++G+GKT F I
Sbjct: 20 VSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGR-DVIAQAQSGTGKTATFSIG 78
Query: 61 ILTGI 65
IL I
Sbjct: 79 ILQSI 83
Score = 55 (24.4 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 11/13 (84%), Positives = 13/13 (100%)
Query: 155 ALILAPTRELAIQ 167
ALIL+PTRELA+Q
Sbjct: 92 ALILSPTRELAVQ 104
>UNIPROTKB|Q4K8U0 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A" species:220664
"Pseudomonas protegens Pf-5" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006950
GO:GO:0006355 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
OMA:LPQGMPK RefSeq:YP_261343.1 ProteinModelPortal:Q4K8U0
GeneID:3477377 KEGG:pfl:PFL_4251 PATRIC:19877913
ProtClustDB:CLSK867560 BioCyc:PFLU220664:GIX8-4286-MONOMER
Uniprot:Q4K8U0
Length = 557
Score = 111 (44.1 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 13 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
I+ A+ G++ P+ IQ +P +LA D++G A+TG+GKT AF +PIL
Sbjct: 17 IVAAVVATGYEEPSAIQQQSIP-IILAGHDMIGQAQTGTGKTAAFALPIL 65
Score = 58 (25.5 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 146 VKKTRNKLYALILAPTRELAIQ 167
+ ++ + ALILAPTRELA+Q
Sbjct: 68 IDPSKREPQALILAPTRELALQ 89
>UNIPROTKB|Q8EHT1 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 113 (44.8 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 20/40 (50%), Positives = 32/40 (80%)
Query: 23 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
K PT++Q + +P A+LA +D++ ++TGSGKT AFG+P+L
Sbjct: 37 KHPTRVQQLAIP-AILAGRDLLALSQTGSGKTFAFGLPLL 75
Score = 53 (23.7 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 152 KLYALILAPTRELAIQ 167
K AL+L PTRELA+Q
Sbjct: 95 KPLALVLVPTRELALQ 110
>TIGR_CMR|SO_1136 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 113 (44.8 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 20/40 (50%), Positives = 32/40 (80%)
Query: 23 KTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
K PT++Q + +P A+LA +D++ ++TGSGKT AFG+P+L
Sbjct: 37 KHPTRVQQLAIP-AILAGRDLLALSQTGSGKTFAFGLPLL 75
Score = 53 (23.7 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 152 KLYALILAPTRELAIQ 167
K AL+L PTRELA+Q
Sbjct: 95 KPLALVLVPTRELALQ 110
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 117 (46.2 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 24/81 (29%), Positives = 42/81 (51%)
Query: 6 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65
+ + ++ L + G PT IQ +P L KD++ A+TG+GKT AFG+P++
Sbjct: 10 QLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQG-KDVLAGAQTGTGKTAAFGLPLIQRF 68
Query: 66 VNKLENPTEEDENDSARKDIV 86
+ E P + + N + +V
Sbjct: 69 I---EQPWQREANSKEIRALV 86
Score = 48 (22.0 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 152 KLYALILAPTRELAIQ 167
++ AL+L PTRELA Q
Sbjct: 81 EIRALVLVPTRELAQQ 96
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 117 (46.2 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 24/81 (29%), Positives = 42/81 (51%)
Query: 6 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65
+ + ++ L + G PT IQ +P L KD++ A+TG+GKT AFG+P++
Sbjct: 10 QLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQG-KDVLAGAQTGTGKTAAFGLPLIQRF 68
Query: 66 VNKLENPTEEDENDSARKDIV 86
+ E P + + N + +V
Sbjct: 69 I---EQPWQREANSKEIRALV 86
Score = 48 (22.0 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 152 KLYALILAPTRELAIQ 167
++ AL+L PTRELA Q
Sbjct: 81 EIRALVLVPTRELAQQ 96
>ZFIN|ZDB-GENE-030131-6215 [details] [associations]
symbol:ddx23 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 23" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-6215
GO:GO:0005524 GO:GO:0003676 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
CTD:9416 HOGENOM:HOG000268796 HOVERGEN:HBG102054 OrthoDB:EOG46T312
EMBL:CR936486 EMBL:CR354537 EMBL:BC060524 IPI:IPI00509665
RefSeq:NP_956176.1 UniGene:Dr.78688 STRING:Q6P9Z2
Ensembl:ENSDART00000019620 GeneID:334283 KEGG:dre:334283
InParanoid:Q6P9Z2 NextBio:20810336 Uniprot:Q6P9Z2
Length = 807
Score = 148 (57.2 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 37/104 (35%), Positives = 56/104 (53%)
Query: 4 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63
W ++++P I+ + + G+K PT IQ +P L R DI+G AETGSGKT AF IP+L
Sbjct: 380 WKEYSLPPHILEVIEKCGYKDPTPIQRQAIPIGLQNR-DIIGVAETGSGKTAAFLIPLLV 438
Query: 64 GIVN--KLENPTEEDENDSA--RKDIVGAAETGSGKTLAFGIPI 103
I K++ + D+ A A+ +T+ FG P+
Sbjct: 439 WITTLPKIDRIEDSDQGPYAIILAPTRELAQQIEEETIKFGKPL 482
>UNIPROTKB|Q5ZLN8 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
EMBL:AJ719696 IPI:IPI00590534 RefSeq:NP_001006185.1
UniGene:Gga.42731 ProteinModelPortal:Q5ZLN8 STRING:Q5ZLN8
PRIDE:Q5ZLN8 GeneID:416820 KEGG:gga:416820 InParanoid:Q5ZLN8
NextBio:20820225 Uniprot:Q5ZLN8
Length = 591
Score = 117 (46.2 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 26/58 (44%), Positives = 36/58 (62%)
Query: 13 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLE 70
++RAL GF T +QS +P ++ KD+ A TGSGKTLAF IPIL ++ + E
Sbjct: 20 VLRALQDLGFDRMTPVQSATIP-LFMSNKDVAAEAVTGSGKTLAFVIPILEILLRREE 76
Score = 52 (23.4 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 147 KKTRNKLYALILAPTRELAIQ 167
K + ++ A+I+ PTRELAIQ
Sbjct: 77 KLKKMQVGAIIITPTRELAIQ 97
>FB|FBgn0036104 [details] [associations]
symbol:CG6418 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE014296 GO:GO:0006200
GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 KO:K12835 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AY061400 RefSeq:NP_648413.1
UniGene:Dm.922 SMR:Q9VTC1 IntAct:Q9VTC1 MINT:MINT-311970
STRING:Q9VTC1 EnsemblMetazoa:FBtr0076274 GeneID:39218
KEGG:dme:Dmel_CG6418 UCSC:CG6418-RB FlyBase:FBgn0036104
InParanoid:Q9VTC1 OrthoDB:EOG4KKWJ0 ChiTaRS:CG6418 GenomeRNAi:39218
NextBio:812543 Uniprot:Q9VTC1
Length = 791
Score = 122 (48.0 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 26/62 (41%), Positives = 41/62 (66%)
Query: 7 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66
F E +I+A+ + + PT IQ+ +P+AL R DI+G A+TGSGKT AF P+L ++
Sbjct: 274 FGFDEQLIKAVRKAEYTQPTPIQAQAVPTALSGR-DIIGIAKTGSGKTAAFIWPMLMHVM 332
Query: 67 NK 68
++
Sbjct: 333 DQ 334
Score = 50 (22.7 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 10/12 (83%), Positives = 12/12 (100%)
Query: 156 LILAPTRELAIQ 167
LILAPTREL++Q
Sbjct: 346 LILAPTRELSLQ 357
>WB|WBGene00013214 [details] [associations]
symbol:Y54G11A.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL034488 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
HSSP:P10081 PIR:T27176 RefSeq:NP_496973.1 ProteinModelPortal:Q9XVZ6
SMR:Q9XVZ6 STRING:Q9XVZ6 PaxDb:Q9XVZ6 EnsemblMetazoa:Y54G11A.3
GeneID:175083 KEGG:cel:CELE_Y54G11A.3 UCSC:Y54G11A.3 CTD:175083
WormBase:Y54G11A.3 InParanoid:Q9XVZ6 OMA:NGFEKPS NextBio:886680
Uniprot:Q9XVZ6
Length = 504
Score = 120 (47.3 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 28/71 (39%), Positives = 43/71 (60%)
Query: 7 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66
F +I+ + + GF+ P+ IQS + P LL+ +D +G ++TGSGKTLAF +P L I
Sbjct: 89 FGSNASIMGEIRKNGFEKPSPIQSQMWP-LLLSGQDCIGVSQTGSGKTLAFLLPALLHID 147
Query: 67 NKLENPTEEDE 77
+L + DE
Sbjct: 148 AQLAQYEKNDE 158
Score = 47 (21.6 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 154 YALILAPTRELAIQ 167
+ L+L+PTRELA Q
Sbjct: 165 FVLVLSPTRELAQQ 178
>UNIPROTKB|Q9Y2R4 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:11056 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AF077033 EMBL:AK001652 EMBL:AK093661 EMBL:AC091199
EMBL:BC041785 EMBL:AJ010840 IPI:IPI00032423 RefSeq:NP_008941.2
UniGene:Hs.590937 PDB:3DKP PDBsum:3DKP ProteinModelPortal:Q9Y2R4
SMR:Q9Y2R4 IntAct:Q9Y2R4 STRING:Q9Y2R4 PhosphoSite:Q9Y2R4
DMDM:296439375 SWISS-2DPAGE:Q9Y2R4 PaxDb:Q9Y2R4 PRIDE:Q9Y2R4
Ensembl:ENST00000349699 GeneID:11056 KEGG:hsa:11056 UCSC:uc002hoh.2
GeneCards:GC17M035969 HGNC:HGNC:20038 MIM:612500 neXtProt:NX_Q9Y2R4
PharmGKB:PA134904836 InParanoid:Q9Y2R4 PhylomeDB:Q9Y2R4
ChiTaRS:DDX52 EvolutionaryTrace:Q9Y2R4 GenomeRNAi:11056
NextBio:42007 ArrayExpress:Q9Y2R4 Bgee:Q9Y2R4 CleanEx:HS_DDX52
Genevestigator:Q9Y2R4 GermOnline:ENSG00000141141 Uniprot:Q9Y2R4
Length = 599
Score = 115 (45.5 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 23/57 (40%), Positives = 37/57 (64%)
Query: 6 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
++ I +++ + GF+ PT IQ +P +L ++++ +A TGSGKTLAF IPIL
Sbjct: 169 EYKINSRLLQNILDAGFQMPTPIQMQAIP-VMLHGRELLASAPTGSGKTLAFSIPIL 224
Score = 54 (24.1 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 146 VKKTRNKLY-ALILAPTRELAIQ 167
+K+ NK + ALI++PTRELA Q
Sbjct: 227 LKQPANKGFRALIISPTRELASQ 249
>POMBASE|SPBP8B7.16c [details] [associations]
symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
NextBio:20802492 Uniprot:P24782
Length = 550
Score = 115 (45.5 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 10 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65
P +++ + Q GF+ PT IQ P A+ R D+VG + TGSGKTL++ +P + I
Sbjct: 130 PNYVLKEVKQLGFEAPTPIQQQAWPMAMSGR-DMVGISATGSGKTLSYCLPAIVHI 184
Score = 53 (23.7 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 10/12 (83%), Positives = 12/12 (100%)
Query: 156 LILAPTRELAIQ 167
L+LAPTRELA+Q
Sbjct: 199 LVLAPTRELAVQ 210
>ZFIN|ZDB-GENE-031030-3 [details] [associations]
symbol:ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
49" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-3 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14778
HOVERGEN:HBG100512 CTD:54555 EMBL:BC047834 IPI:IPI00551936
RefSeq:NP_938179.1 UniGene:Dr.77634 ProteinModelPortal:Q7ZUT9
STRING:Q7ZUT9 GeneID:386632 KEGG:dre:386632 InParanoid:Q7ZUT9
NextBio:20813961 ArrayExpress:Q7ZUT9 Uniprot:Q7ZUT9
Length = 468
Score = 117 (46.2 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
MA + + E +I+ Q G PT +Q +P A+L +D +G A+TGSGKT AF +P
Sbjct: 1 MATFESLGLSEWLIQQCKQMGISRPTAVQEKCIP-AILDGRDCMGCAKTGSGKTAAFVLP 59
Query: 61 IL 62
+L
Sbjct: 60 VL 61
Score = 49 (22.3 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 153 LYALILAPTRELAIQ 167
++ L+L PTRELA Q
Sbjct: 71 VFCLVLTPTRELAYQ 85
>UNIPROTKB|D4A824 [details] [associations]
symbol:Ddx18 "Protein Ddx18" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1549712 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
EMBL:AC128353 IPI:IPI00393022 Ensembl:ENSRNOT00000028172
ArrayExpress:D4A824 Uniprot:D4A824
Length = 662
Score = 116 (45.9 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 9 IPETIIRALYQKGFKTPTKIQ-SMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67
+ E ++A+ + GFK T+IQ + P LL +D++ AA+TGSGKTLAF IP++ IV
Sbjct: 178 VNENTLKAIEEMGFKHMTEIQHKSIRP--LLEGRDLLAAAKTGSGKTLAFLIPVIELIV- 234
Query: 68 KLE 70
KL+
Sbjct: 235 KLK 237
Score = 54 (24.1 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 150 RNKLYALILAPTRELAIQ 167
RN LIL+PTRELA+Q
Sbjct: 241 RNGTGVLILSPTRELAMQ 258
>RGD|1549712 [details] [associations]
symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1549712 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
OrthoDB:EOG4894MF EMBL:AC128353 EMBL:BC083919 IPI:IPI00367078
RefSeq:NP_001006997.1 UniGene:Rn.26598 STRING:Q5XHY0
Ensembl:ENSRNOT00000037203 GeneID:308490 KEGG:rno:308490
UCSC:RGD:1549712 InParanoid:Q5XHY0 NextBio:658990
Genevestigator:Q5XHY0 Uniprot:Q5XHY0
Length = 674
Score = 116 (45.9 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 9 IPETIIRALYQKGFKTPTKIQ-SMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67
+ E ++A+ + GFK T+IQ + P LL +D++ AA+TGSGKTLAF IP++ IV
Sbjct: 190 VNENTLKAIEEMGFKHMTEIQHKSIRP--LLEGRDLLAAAKTGSGKTLAFLIPVIELIV- 246
Query: 68 KLE 70
KL+
Sbjct: 247 KLK 249
Score = 54 (24.1 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 150 RNKLYALILAPTRELAIQ 167
RN LIL+PTRELA+Q
Sbjct: 253 RNGTGVLILSPTRELAMQ 270
>GENEDB_PFALCIPARUM|PFC0915w [details] [associations]
symbol:PFC0915w "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006200 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844502 HOGENOM:HOG000268797 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
ProtClustDB:CLSZ2429504 RefSeq:XP_001351278.1
ProteinModelPortal:O97285 SMR:O97285 EnsemblProtists:PFC0915w:mRNA
GeneID:814522 KEGG:pfa:PFC0915w EuPathDB:PlasmoDB:PF3D7_0320800
Uniprot:O97285
Length = 433
Score = 110 (43.8 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 22/60 (36%), Positives = 39/60 (65%)
Query: 3 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
E+ + + ++ +++KG++ P+ IQ +P AL A K+I+ A+ G+GKT AF IP+L
Sbjct: 61 EFEDYFLKRELLMGIFEKGYEKPSPIQEESIPVAL-AGKNILARAKNGTGKTAAFAIPLL 119
Score = 55 (24.4 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 150 RNKLYALILAPTRELAIQ 167
+N + LIL PTRELA+Q
Sbjct: 126 KNFIQGLILVPTRELALQ 143
>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
symbol:PF14_0437 "helicase, truncated,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 120 (47.3 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 27/61 (44%), Positives = 36/61 (59%)
Query: 6 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65
K P+ +I++L PT IQ P AL + KD++G AETGSGKTLAF +P I
Sbjct: 117 KIGFPDYVIKSLKNNNIVAPTPIQIQGWPIAL-SGKDMIGKAETGSGKTLAFILPAFVHI 175
Query: 66 V 66
+
Sbjct: 176 L 176
Score = 47 (21.6 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 10/12 (83%), Positives = 11/12 (91%)
Query: 156 LILAPTRELAIQ 167
L+LAPTRELA Q
Sbjct: 190 LVLAPTRELAEQ 201
>UNIPROTKB|Q8IL13 [details] [associations]
symbol:PF14_0437 "Helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 120 (47.3 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 27/61 (44%), Positives = 36/61 (59%)
Query: 6 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65
K P+ +I++L PT IQ P AL + KD++G AETGSGKTLAF +P I
Sbjct: 117 KIGFPDYVIKSLKNNNIVAPTPIQIQGWPIAL-SGKDMIGKAETGSGKTLAFILPAFVHI 175
Query: 66 V 66
+
Sbjct: 176 L 176
Score = 47 (21.6 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 10/12 (83%), Positives = 11/12 (91%)
Query: 156 LILAPTRELAIQ 167
L+LAPTRELA Q
Sbjct: 190 LVLAPTRELAEQ 201
>TIGR_CMR|GSU_0522 [details] [associations]
symbol:GSU_0522 "ATP-dependent RNA helicase RhlB"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732
RefSeq:NP_951580.1 ProteinModelPortal:Q74FT4 GeneID:2685920
KEGG:gsu:GSU0522 PATRIC:22023799 OMA:LAYEFMN ProtClustDB:CLSK827899
BioCyc:GSUL243231:GH27-482-MONOMER Uniprot:Q74FT4
Length = 443
Score = 113 (44.8 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 23/64 (35%), Positives = 38/64 (59%)
Query: 3 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
++ N+PE +++ + GF T IQ +P +L KD+ G A+TG+GKT AF I +
Sbjct: 2 KFADLNLPEQVMQGVADAGFSDCTPIQEKTLPLSL-GGKDVAGQAQTGTGKTAAFLISLF 60
Query: 63 TGIV 66
T ++
Sbjct: 61 TKLL 64
Score = 52 (23.4 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 155 ALILAPTRELAIQ 167
A+ILAPTREL +Q
Sbjct: 77 AIILAPTRELVVQ 89
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 112 (44.5 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 21/50 (42%), Positives = 35/50 (70%)
Query: 13 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
++ L + G++ PT IQ +P A+L ++D++ A+TG+GKT AF +PIL
Sbjct: 12 LVDTLAELGYQQPTPIQVEAIP-AILTKQDVMAGAQTGTGKTAAFALPIL 60
Score = 52 (23.4 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 155 ALILAPTRELAIQ 167
AL+L PTRELA+Q
Sbjct: 78 ALVLVPTRELALQ 90
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 112 (44.5 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 21/50 (42%), Positives = 35/50 (70%)
Query: 13 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
++ L + G++ PT IQ +P A+L ++D++ A+TG+GKT AF +PIL
Sbjct: 12 LVDTLAELGYQQPTPIQVEAIP-AILTKQDVMAGAQTGTGKTAAFALPIL 60
Score = 52 (23.4 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 155 ALILAPTRELAIQ 167
AL+L PTRELA+Q
Sbjct: 78 ALVLVPTRELALQ 90
>ZFIN|ZDB-GENE-031001-8 [details] [associations]
symbol:ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
27" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031001-8 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 CTD:55661 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 EMBL:AY648729 IPI:IPI00501087
RefSeq:NP_001002869.1 UniGene:Dr.76523 ProteinModelPortal:Q6DRN0
PRIDE:Q6DRN0 GeneID:378844 KEGG:dre:378844 InParanoid:Q6DRN0
NextBio:20813841 ArrayExpress:Q6DRN0 Bgee:Q6DRN0 Uniprot:Q6DRN0
Length = 776
Score = 125 (49.1 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 8 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67
N+ +++A+ GFK PT IQ +P LL KDI A TG+GKT AF +P+L ++
Sbjct: 207 NLSRPLLKAISTMGFKQPTPIQKACVPVGLLG-KDICACAATGTGKTAAFMLPVLERLIY 265
Query: 68 K 68
K
Sbjct: 266 K 266
Score = 46 (21.3 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 156 LILAPTRELAIQ 167
L+L PTREL IQ
Sbjct: 276 LVLVPTRELGIQ 287
>UNIPROTKB|A4R715 [details] [associations]
symbol:DHH1 "ATP-dependent RNA helicase DHH1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 GO:GO:0003723 GO:GO:0000932
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001234 GO:GO:0008026 eggNOG:COG0513 KO:K12614
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_003716556.1
GeneID:2676879 KEGG:mgr:MGG_03388 OrthoDB:EOG4QJVWF Uniprot:A4R715
Length = 535
Score = 111 (44.1 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 3 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
E+ F + ++ +++ GF+ P+ IQ +P AL R DI+ A+ G+GKT AF +P L
Sbjct: 48 EFENFGLKRDLLMGIFEAGFEKPSPIQEESIPVALTGR-DILARAKNGTGKTAAFVVPAL 106
Query: 63 TGIVNKL 69
I K+
Sbjct: 107 ETINPKV 113
Score = 56 (24.8 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 144 EFVKKTRNKLYALILAPTRELAIQ 167
E + +K+ LIL PTRELA+Q
Sbjct: 107 ETINPKVSKIQCLILVPTRELAMQ 130
>TIGR_CMR|VC_2564 [details] [associations]
symbol:VC_2564 "ATP-dependent RNA helicase DbpA"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
KO:K05591 ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
OMA:THEKSTI PIR:B82060 RefSeq:NP_232192.1 ProteinModelPortal:Q9KP15
DNASU:2615581 GeneID:2615581 KEGG:vch:VC2564 PATRIC:20084152
Uniprot:Q9KP15
Length = 460
Score = 114 (45.2 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 8 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65
N+ ++ L GF T T IQ+ +P A+L +D++G +TGSGKT AFG+ +L+ +
Sbjct: 10 NLKPELLANLETMGFATMTPIQAQSLP-AILKGQDVIGQGKTGSGKTAAFGLGVLSNL 66
Score = 51 (23.0 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 150 RNKLYALILAPTRELAIQ 167
R ++ AL+L PTRELA Q
Sbjct: 70 RFRVQALVLCPTRELADQ 87
>UNIPROTKB|F1NAH6 [details] [associations]
symbol:LOC100859810 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0035458 "cellular response to interferon-beta" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051607 "defense response
to virus" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0035458
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AADN02028748
EMBL:AADN02028749 EMBL:AADN02068652 IPI:IPI00576331
Ensembl:ENSGALT00000004794 Uniprot:F1NAH6
Length = 607
Score = 123 (48.4 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 24/57 (42%), Positives = 38/57 (66%)
Query: 6 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
+ P I+R L +KG + PT IQ +P+ +L+ +D++G A TGSGKTL F +P++
Sbjct: 181 EMKFPAAILRGLKKKGIQQPTPIQIQGIPT-ILSGRDMIGIAFTGSGKTLVFTLPVI 236
Score = 45 (20.9 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 154 YALILAPTRELAIQ 167
Y LI+ P+RELA Q
Sbjct: 255 YGLIICPSRELARQ 268
>CGD|CAL0005725 [details] [associations]
symbol:PRP5 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 119 (46.9 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 23/64 (35%), Positives = 42/64 (65%)
Query: 3 EWVKFNIPETIIRALYQK-GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 61
+W +P + ++ K F+ P+ IQS +P+ +L+ +D++G A+TGSGKTL++ +P+
Sbjct: 294 KWSHLALPTNLSSVIHDKLKFEKPSAIQSQALPT-ILSGRDVIGIAKTGSGKTLSYVLPM 352
Query: 62 LTGI 65
L I
Sbjct: 353 LRHI 356
Score = 53 (23.7 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 144 EFVKKTRNKLYALILAPTRELAIQ 167
+F K + + LIL+PTRELA+Q
Sbjct: 360 QFSKDNQGPI-GLILSPTRELALQ 382
>UNIPROTKB|Q5ADL0 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 119 (46.9 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 23/64 (35%), Positives = 42/64 (65%)
Query: 3 EWVKFNIPETIIRALYQK-GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 61
+W +P + ++ K F+ P+ IQS +P+ +L+ +D++G A+TGSGKTL++ +P+
Sbjct: 294 KWSHLALPTNLSSVIHDKLKFEKPSAIQSQALPT-ILSGRDVIGIAKTGSGKTLSYVLPM 352
Query: 62 LTGI 65
L I
Sbjct: 353 LRHI 356
Score = 53 (23.7 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 144 EFVKKTRNKLYALILAPTRELAIQ 167
+F K + + LIL+PTRELA+Q
Sbjct: 360 QFSKDNQGPI-GLILSPTRELALQ 382
>UNIPROTKB|B4E102 [details] [associations]
symbol:EIF4A1 "cDNA FLJ57766, moderately similar to
Eukaryotic initiation factor 4A-I (EC 3.6.1.-)" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA]
InterPro:IPR011545 Pfam:PF00270 GO:GO:0005524 GO:GO:0003743
InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 EMBL:AC016876 UniGene:Hs.129673 HGNC:HGNC:3282
ChiTaRS:EIF4A1 EMBL:AK303599 IPI:IPI00910691 SMR:B4E102
STRING:B4E102 Ensembl:ENST00000380512 HOVERGEN:HBG104017
Uniprot:B4E102
Length = 146
Score = 101 (40.6 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 21/59 (35%), Positives = 36/59 (61%)
Query: 8 NIPETIIRALYQKGFKTPTKIQSM-VMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65
N+ E+++R +Y GF+ P+ IQ ++P + D++ A++G+GKT F I IL I
Sbjct: 22 NLSESLLRGIYAYGFEKPSAIQQRAILPC--IKGYDVIAQAQSGTGKTATFAISILQQI 78
Score = 51 (23.0 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 11/13 (84%), Positives = 12/13 (92%)
Query: 155 ALILAPTRELAIQ 167
AL+LAPTRELA Q
Sbjct: 87 ALVLAPTRELAQQ 99
>UNIPROTKB|Q485I3 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 118 (46.6 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 26/63 (41%), Positives = 41/63 (65%)
Query: 8 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67
++ + +++ L G++ T IQ+ +P LL KD++G A+TGSGKT AFG+ +L N
Sbjct: 16 SLKQDLVKNLSSLGYEQMTPIQAKTLPE-LLKGKDVIGEAKTGSGKTAAFGLALL----N 70
Query: 68 KLE 70
KLE
Sbjct: 71 KLE 73
Score = 47 (21.6 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 146 VKKTRNKLYALILAPTRELAIQ 167
VKK R + ++++ PTRELA Q
Sbjct: 74 VKKFR--IQSMVICPTRELADQ 93
>TIGR_CMR|CPS_1540 [details] [associations]
symbol:CPS_1540 "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 118 (46.6 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 26/63 (41%), Positives = 41/63 (65%)
Query: 8 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67
++ + +++ L G++ T IQ+ +P LL KD++G A+TGSGKT AFG+ +L N
Sbjct: 16 SLKQDLVKNLSSLGYEQMTPIQAKTLPE-LLKGKDVIGEAKTGSGKTAAFGLALL----N 70
Query: 68 KLE 70
KLE
Sbjct: 71 KLE 73
Score = 47 (21.6 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 146 VKKTRNKLYALILAPTRELAIQ 167
VKK R + ++++ PTRELA Q
Sbjct: 74 VKKFR--IQSMVICPTRELADQ 93
>DICTYBASE|DDB_G0291588 [details] [associations]
symbol:ddx55 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0291588 GO:GO:0005524
EMBL:AAFI02000177 GenomeReviews:CM000155_GR GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K14809
OMA:HEKKVET RefSeq:XP_635318.1 ProteinModelPortal:Q54EC2
STRING:Q54EC2 EnsemblProtists:DDB0234215 GeneID:8628262
KEGG:ddi:DDB_G0291588 ProtClustDB:CLSZ2429585 Uniprot:Q54EC2
Length = 663
Score = 116 (45.9 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 4 WVKFN--IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 61
W K + ++ + + + GFK+ + +QS V+P ++ KD++ A TGSGKTLAF IPI
Sbjct: 10 WNKLENKLSDSTLNTINRLGFKSMSPVQSAVIP-LFMSNKDVLVEACTGSGKTLAFVIPI 68
Query: 62 LTGIVNKLENPTEED 76
+ I+ + N + D
Sbjct: 69 IEKILKRETNLKKTD 83
Score = 53 (23.7 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 146 VKKTRNKLYALILAPTRELAIQ 167
+KKT + ++I++PTRELAIQ
Sbjct: 79 LKKT--DIASIIISPTRELAIQ 98
>SGD|S000001894 [details] [associations]
symbol:SPB4 "Putative ATP-dependent RNA helicase"
species:4932 "Saccharomyces cerevisiae" [GO:0000027 "ribosomal
large subunit assembly" evidence=IMP] [GO:0030686 "90S preribosome"
evidence=IDA;IPI] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0000470 "maturation of LSU-rRNA" evidence=IMP]
[GO:0005654 "nucleoplasm" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000001894
GO:GO:0005524 GO:GO:0005730 EMBL:D50617 EMBL:BK006940 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0030686
GO:GO:0006364 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268803 KO:K14809 GeneTree:ENSGT00550000074969
OMA:MDSSANI OrthoDB:EOG46MFT3 EMBL:X16147 PIR:S14942
RefSeq:NP_116654.1 ProteinModelPortal:P25808 SMR:P25808
DIP:DIP-5423N IntAct:P25808 MINT:MINT-525740 STRING:P25808
PaxDb:P25808 EnsemblFungi:YFL002C GeneID:850549 KEGG:sce:YFL002C
CYGD:YFL002c NextBio:966324 Genevestigator:P25808
GermOnline:YFL002C Uniprot:P25808
Length = 606
Score = 109 (43.4 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 28/74 (37%), Positives = 42/74 (56%)
Query: 3 EW--VKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
EW + F++ I L GF+T T +Q+ +P L KD+V + TGSGKT AF IP
Sbjct: 6 EWDNLGFSLLPWIRTGLDVMGFETMTPVQASTIPM-LAGNKDVVVDSVTGSGKTAAFVIP 64
Query: 61 ILTGIVNKLENPTE 74
+L +V + N ++
Sbjct: 65 VLEKVVKEEANTSK 78
Score = 59 (25.8 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 140 ANTTEFVKKTRNKLYALILAPTRELAIQ 167
ANT++F KK ++LI+APTREL+ Q
Sbjct: 74 ANTSKF-KKAH--FHSLIIAPTRELSRQ 98
>FB|FBgn0010220 [details] [associations]
symbol:Dbp45A "DEAD box protein 45A" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS;NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE013599
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 GO:GO:0000381
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
GeneTree:ENSGT00670000098028 EMBL:L13612 EMBL:Z23266 EMBL:AY058728
PIR:S38329 RefSeq:NP_476927.1 UniGene:Dm.4231
ProteinModelPortal:Q07886 SMR:Q07886 PaxDb:Q07886
EnsemblMetazoa:FBtr0088564 GeneID:35917 KEGG:dme:Dmel_CG12759
CTD:35917 FlyBase:FBgn0010220 InParanoid:Q07886 OMA:CQLLSMT
OrthoDB:EOG431ZDJ PhylomeDB:Q07886 GenomeRNAi:35917 NextBio:795815
Bgee:Q07886 GermOnline:CG12759 Uniprot:Q07886
Length = 521
Score = 119 (46.9 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 13 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
+++ L + G K T IQ +P A+LA +D +GAA+TGSGKT AF +PIL
Sbjct: 18 LVKQLTKLGLKGATPIQQKCIP-AILAGQDCIGAAKTGSGKTFAFALPIL 66
Score = 47 (21.6 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 154 YALILAPTRELAIQ 167
+AL+L PT ELA Q
Sbjct: 77 FALVLTPTHELAYQ 90
>UNIPROTKB|F5H5U2 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 EMBL:AC055713 EMBL:AC117503
HGNC:HGNC:20085 ChiTaRS:DDX55 IPI:IPI01010332
ProteinModelPortal:F5H5U2 SMR:F5H5U2 Ensembl:ENST00000538744
ArrayExpress:F5H5U2 Bgee:F5H5U2 Uniprot:F5H5U2
Length = 569
Score = 112 (44.5 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 27/69 (39%), Positives = 38/69 (55%)
Query: 4 WVKFNIP--ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 61
W +P ++ AL + GF T +QS +P + KD+ A TGSGKTLAF IPI
Sbjct: 9 WESLPVPLHPQVLGALRELGFPYMTPVQSATIP-LFMRNKDVAAEAVTGSGKTLAFVIPI 67
Query: 62 LTGIVNKLE 70
L ++ + E
Sbjct: 68 LEILLRREE 76
Score = 55 (24.4 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 147 KKTRNKLYALILAPTRELAIQ 167
K ++++ A+I+ PTRELAIQ
Sbjct: 77 KLKKSQVGAIIITPTRELAIQ 97
>TAIR|locus:2032910 [details] [associations]
symbol:RH36 "RNA helicase 36" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
development" evidence=IMP] [GO:0009791 "post-embryonic development"
evidence=IMP] [GO:0090406 "pollen tube" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0009561 "megagametogenesis"
evidence=IMP] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
GO:GO:0009791 GO:GO:0009561 EMBL:AC006341 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
HOGENOM:HOG000268802 OMA:EVRTVEQ GO:GO:0090406 IPI:IPI00521131
PIR:G86297 RefSeq:NP_173078.1 UniGene:At.51634
ProteinModelPortal:Q9SA27 SMR:Q9SA27 PaxDb:Q9SA27 PRIDE:Q9SA27
EnsemblPlants:AT1G16280.1 GeneID:838197 KEGG:ath:AT1G16280
KEGG:dosa:Os07t0633500-00 GeneFarm:1012 TAIR:At1g16280
InParanoid:Q9SA27 PhylomeDB:Q9SA27 ProtClustDB:CLSN2679781
Genevestigator:Q9SA27 GermOnline:AT1G16280 Uniprot:Q9SA27
Length = 491
Score = 114 (45.2 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 22/54 (40%), Positives = 35/54 (64%)
Query: 9 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
+ E + + G + PT +Q+ +P +LA +D++G A+TGSGKT AF +PIL
Sbjct: 65 LAEWAVETCKELGMRKPTPVQTHCVPK-ILAGRDVLGLAQTGSGKTAAFALPIL 117
Score = 51 (23.0 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 9/15 (60%), Positives = 13/15 (86%)
Query: 153 LYALILAPTRELAIQ 167
++AL++ PTRELA Q
Sbjct: 127 VFALVVTPTRELAFQ 141
>UNIPROTKB|G4MSR4 [details] [associations]
symbol:MGG_07099 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0043581 "mycelium development" evidence=IEP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0043581 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM001232 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_003715292.1 EnsemblFungi:MGG_07099T0
GeneID:2682984 KEGG:mgr:MGG_07099 Uniprot:G4MSR4
Length = 717
Score = 119 (46.9 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 28/67 (41%), Positives = 44/67 (65%)
Query: 2 AEWVKFNIPETIIRAL-YQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
++ K NI E+II+A+ ++ T +QSM + AL KD+V A+TG+GKTLAF IP
Sbjct: 77 SDLAKANIDESIIKAITVDMRYEDMTDVQSMTLAPALKG-KDLVAQAKTGTGKTLAFLIP 135
Query: 61 ILTGIVN 67
++ I++
Sbjct: 136 VIQKILD 142
Score = 50 (22.7 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 150 RNKLYALILAPTRELAIQ 167
R + A+I++PTRELA Q
Sbjct: 161 RQSIKAIIISPTRELAEQ 178
>WB|WBGene00018776 [details] [associations]
symbol:F53H1.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0040018 GO:GO:0003676
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 GeneTree:ENSGT00610000086076 KO:K12811
HOGENOM:HOG000007229 OMA:IEEENKF EMBL:FO081458
RefSeq:NP_001033411.1 ProteinModelPortal:Q965K2 SMR:Q965K2
PaxDb:Q965K2 PRIDE:Q965K2 EnsemblMetazoa:F53H1.1 GeneID:176943
KEGG:cel:CELE_F53H1.1 UCSC:F53H1.1 CTD:176943 WormBase:F53H1.1
InParanoid:Q965K2 NextBio:894678 ArrayExpress:Q965K2 Uniprot:Q965K2
Length = 970
Score = 119 (46.9 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
Identities = 27/76 (35%), Positives = 46/76 (60%)
Query: 4 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63
W + + ++ L + + PT IQ+ +PS +++ +D++G A+TGSGKTLAF +P+
Sbjct: 306 WAQCGVNLKMMNVLKKFEYSKPTSIQAQAIPS-IMSGRDVIGIAKTGSGKTLAFLLPMFR 364
Query: 64 GIVNKLENPTEEDEND 79
I L+ P E +E D
Sbjct: 365 HI---LDQP-ELEEGD 376
Score = 53 (23.7 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
Identities = 11/13 (84%), Positives = 13/13 (100%)
Query: 155 ALILAPTRELAIQ 167
A+ILAPTRELA+Q
Sbjct: 380 AVILAPTRELAMQ 392
>DICTYBASE|DDB_G0280147 [details] [associations]
symbol:ddx47 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
Uniprot:Q54VT4
Length = 546
Score = 114 (45.2 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
Identities = 27/50 (54%), Positives = 33/50 (66%)
Query: 13 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
II A + GF P +IQ +P AL R DI+G A+TGSGKT AF IP+L
Sbjct: 130 IIDACNKLGFNKPKEIQRESIPWALKGR-DIIGLAQTGSGKTAAFVIPVL 178
Score = 52 (23.4 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 153 LYALILAPTRELAIQ 167
L+ L LAPTRELA Q
Sbjct: 188 LFCLALAPTRELAYQ 202
>UNIPROTKB|Q8NHQ9 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
OMA:CACVEYW EMBL:AC055713 EMBL:AC117503 EMBL:BC030020 EMBL:AL833756
EMBL:AB046815 IPI:IPI00185361 RefSeq:NP_065987.1 UniGene:Hs.286173
ProteinModelPortal:Q8NHQ9 SMR:Q8NHQ9 STRING:Q8NHQ9
PhosphoSite:Q8NHQ9 DMDM:296439376 PaxDb:Q8NHQ9 PRIDE:Q8NHQ9
Ensembl:ENST00000238146 GeneID:57696 KEGG:hsa:57696 UCSC:uc001ufi.3
GeneCards:GC12P124086 HGNC:HGNC:20085 neXtProt:NX_Q8NHQ9
PharmGKB:PA134984021 InParanoid:Q8NHQ9 ChiTaRS:DDX55
GenomeRNAi:57696 NextBio:64547 ArrayExpress:Q8NHQ9 Bgee:Q8NHQ9
CleanEx:HS_DDX55 Genevestigator:Q8NHQ9 GermOnline:ENSG00000111364
Uniprot:Q8NHQ9
Length = 600
Score = 112 (44.5 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 27/69 (39%), Positives = 38/69 (55%)
Query: 4 WVKFNIP--ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 61
W +P ++ AL + GF T +QS +P + KD+ A TGSGKTLAF IPI
Sbjct: 9 WESLPVPLHPQVLGALRELGFPYMTPVQSATIP-LFMRNKDVAAEAVTGSGKTLAFVIPI 67
Query: 62 LTGIVNKLE 70
L ++ + E
Sbjct: 68 LEILLRREE 76
Score = 55 (24.4 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 147 KKTRNKLYALILAPTRELAIQ 167
K ++++ A+I+ PTRELAIQ
Sbjct: 77 KLKKSQVGAIIITPTRELAIQ 97
>POMBASE|SPCC10H11.01 [details] [associations]
symbol:prp11 "ATP-dependent RNA helicase Prp11"
species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
NextBio:20800113 Uniprot:Q9P7C7
Length = 1014
Score = 120 (47.3 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 26/81 (32%), Positives = 45/81 (55%)
Query: 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
+ W + + I + G++ PT IQ+ +P A+ + +D++G A+TGSGKT+AF +P
Sbjct: 417 VTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIP-AITSGRDVIGVAKTGSGKTIAFLLP 475
Query: 61 ILTGIVNKLENPTEEDENDSA 81
+ I K + P + E A
Sbjct: 476 MFRHI--KDQRPLKTGEGPIA 494
Score = 52 (23.4 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 148 KTRNKLYALILAPTRELAIQ 167
KT A+I+ PTRELA+Q
Sbjct: 487 KTGEGPIAIIMTPTRELAVQ 506
>UNIPROTKB|F1NQV5 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AADN02019007 IPI:IPI00579774
Ensembl:ENSGALT00000039062 ArrayExpress:F1NQV5 Uniprot:F1NQV5
Length = 758
Score = 123 (48.4 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 8 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVN 67
N+ +++A+ GFK PT IQ +P LL KDI A TG+GKT AF +P+L ++
Sbjct: 186 NLSRPLLKAITALGFKQPTPIQKACIPVGLLG-KDICACAATGTGKTAAFILPVLERLIY 244
Query: 68 K 68
K
Sbjct: 245 K 245
Score = 46 (21.3 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 156 LILAPTRELAIQ 167
L+L PTREL IQ
Sbjct: 255 LVLVPTRELGIQ 266
Score = 35 (17.4 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 66 VNKLENPTEEDENDSARKDI 85
+NK + EE + ++A K +
Sbjct: 592 INKAKKQLEEGKQEAATKGV 611
>MGI|MGI:2136689 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2136689 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 HOVERGEN:HBG100512 CTD:54555
OrthoDB:EOG4C87SC EMBL:BC099554 IPI:IPI00354271
RefSeq:NP_001020093.2 UniGene:Mm.388127 UniGene:Mm.440659
ProteinModelPortal:Q4FZF3 SMR:Q4FZF3 PhosphoSite:Q4FZF3
PRIDE:Q4FZF3 Ensembl:ENSMUST00000008004 GeneID:234374
KEGG:mmu:234374 UCSC:uc009lzu.1 InParanoid:Q4FZF3 NextBio:382139
Bgee:Q4FZF3 CleanEx:MM_DDX49 Genevestigator:Q4FZF3
GermOnline:ENSMUSG00000057788 Uniprot:Q4FZF3
Length = 480
Score = 114 (45.2 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
MA + + + ++ Q G K PT +Q +P A+L +D +G A+TGSGKT AF +P
Sbjct: 1 MAGFAEIGLSSWLVEQCRQLGLKQPTPVQLGCIP-AILEGRDCLGCAKTGSGKTAAFVLP 59
Query: 61 IL 62
IL
Sbjct: 60 IL 61
Score = 50 (22.7 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 153 LYALILAPTRELAIQ 167
++ L+L PTRELA Q
Sbjct: 71 IFCLVLTPTRELAYQ 85
>RGD|1311124 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1311124 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 IPI:IPI00362462 PRIDE:E9PTF0
Ensembl:ENSRNOT00000004891 UCSC:RGD:1311124 Uniprot:E9PTF0
Length = 480
Score = 114 (45.2 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
MA + + + ++ Q G K PT +Q +P A+L +D +G A+TGSGKT AF +P
Sbjct: 1 MAGFAELRLSSWLVEQCRQLGLKQPTPVQLGCIP-AILEGRDCLGCAKTGSGKTAAFVLP 59
Query: 61 IL 62
IL
Sbjct: 60 IL 61
Score = 50 (22.7 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 153 LYALILAPTRELAIQ 167
++ L+L PTRELA Q
Sbjct: 71 IFCLVLTPTRELAYQ 85
>WB|WBGene00019219 [details] [associations]
symbol:H20J04.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0002009 GO:GO:0040010
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14778 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:FO080156
RefSeq:NP_001040789.1 ProteinModelPortal:Q2WF63 SMR:Q2WF63
PaxDb:Q2WF63 EnsemblMetazoa:H20J04.4b GeneID:186756
KEGG:cel:CELE_H20J04.4 UCSC:H20J04.4a CTD:186756 WormBase:H20J04.4b
InParanoid:Q2WF63 NextBio:932876 ArrayExpress:Q2WF63 Uniprot:Q2WF63
Length = 561
Score = 106 (42.4 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 24/50 (48%), Positives = 31/50 (62%)
Query: 13 IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
I + L KT T +Q+ +P +L DI+G A TG+GKTLAF IPIL
Sbjct: 100 ITQQLQTMQIKTATPVQAACIPK-ILEGSDILGCARTGTGKTLAFAIPIL 148
Score = 60 (26.2 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 12/15 (80%), Positives = 13/15 (86%)
Query: 153 LYALILAPTRELAIQ 167
+YALIL PTRELA Q
Sbjct: 158 IYALILTPTRELAFQ 172
>UNIPROTKB|Q9Y6V7 [details] [associations]
symbol:DDX49 "Probable ATP-dependent RNA helicase DDX49"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC002985 KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
HOVERGEN:HBG100512 EMBL:AK223294 EMBL:BC002674 IPI:IPI00003739
RefSeq:NP_061943.2 UniGene:Hs.143187 ProteinModelPortal:Q9Y6V7
SMR:Q9Y6V7 IntAct:Q9Y6V7 STRING:Q9Y6V7 PhosphoSite:Q9Y6V7
DMDM:74753527 PaxDb:Q9Y6V7 PRIDE:Q9Y6V7 DNASU:54555
Ensembl:ENST00000247003 GeneID:54555 KEGG:hsa:54555 UCSC:uc002nkq.2
CTD:54555 GeneCards:GC19P019030 HGNC:HGNC:18684 neXtProt:NX_Q9Y6V7
PharmGKB:PA134956171 InParanoid:Q9Y6V7 OrthoDB:EOG4C87SC
PhylomeDB:Q9Y6V7 GenomeRNAi:54555 NextBio:57032 ArrayExpress:Q9Y6V7
Bgee:Q9Y6V7 CleanEx:HS_DDX49 Genevestigator:Q9Y6V7
GermOnline:ENSG00000105671 Uniprot:Q9Y6V7
Length = 483
Score = 114 (45.2 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
MA + + + ++ Q G K PT +Q +P A+L +D +G A+TGSGKT AF +P
Sbjct: 1 MAGFAELGLSSWLVEQCRQLGLKQPTPVQLGCIP-AILEGRDCLGCAKTGSGKTAAFVLP 59
Query: 61 IL 62
IL
Sbjct: 60 IL 61
Score = 50 (22.7 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 153 LYALILAPTRELAIQ 167
++ L+L PTRELA Q
Sbjct: 71 IFCLVLTPTRELAYQ 85
>UNIPROTKB|F1S7D9 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 CTD:54555 EMBL:CU640483
RefSeq:XP_003123587.1 UniGene:Ssc.79767 Ensembl:ENSSSCT00000025399
GeneID:100526038 KEGG:ssc:100526038 Uniprot:F1S7D9
Length = 483
Score = 114 (45.2 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
MA + + + ++ Q G K PT +Q +P A+L +D +G A+TGSGKT AF +P
Sbjct: 1 MAGFAELGLSSWLVEQCRQLGLKQPTPVQLGCIP-AILEGRDCLGCAKTGSGKTAAFVLP 59
Query: 61 IL 62
IL
Sbjct: 60 IL 61
Score = 50 (22.7 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 153 LYALILAPTRELAIQ 167
++ L+L PTRELA Q
Sbjct: 71 IFCLVLTPTRELAYQ 85
>CGD|CAL0004182 [details] [associations]
symbol:HCA4 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004182 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 EMBL:AACQ01000023 EMBL:AACQ01000025
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_720233.1 RefSeq:XP_720463.1 ProteinModelPortal:Q5AF95
STRING:Q5AF95 GeneID:3637911 GeneID:3638091 KEGG:cal:CaO19.10227
KEGG:cal:CaO19.2712 KO:K14776 InterPro:IPR025313 Pfam:PF13959
Uniprot:Q5AF95
Length = 765
Score = 115 (45.5 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 29/69 (42%), Positives = 42/69 (60%)
Query: 9 IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV-N 67
I E ++ L + F + T IQ +P AL +D++G A TGSGKTLAF IP++ ++ N
Sbjct: 55 ITENTLKGLKEATFVSLTDIQKKTIPIALKG-EDLMGTARTGSGKTLAFLIPVIESLIRN 113
Query: 68 KLENPTEED 76
K+ TE D
Sbjct: 114 KI---TEYD 119
Score = 54 (24.1 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 11/15 (73%), Positives = 14/15 (93%)
Query: 153 LYALILAPTRELAIQ 167
L ALI++PTRELA+Q
Sbjct: 121 LAALIVSPTRELAVQ 135
>UNIPROTKB|E2RBM7 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
OMA:EVRTVEQ GeneTree:ENSGT00670000098028 CTD:54555
EMBL:AAEX03012274 RefSeq:XP_541930.1 ProteinModelPortal:E2RBM7
Ensembl:ENSCAFT00000023054 GeneID:484814 KEGG:cfa:484814
NextBio:20858886 Uniprot:E2RBM7
Length = 488
Score = 114 (45.2 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
MA + + + ++ Q G K PT +Q +P A+L +D +G A+TGSGKT AF +P
Sbjct: 1 MAGFAELGLSSWLVEQCRQLGLKQPTPVQLGCIP-AILEGRDCLGCAKTGSGKTAAFVLP 59
Query: 61 IL 62
IL
Sbjct: 60 IL 61
Score = 50 (22.7 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 153 LYALILAPTRELAIQ 167
++ L+L PTRELA Q
Sbjct: 71 IFCLVLTPTRELAYQ 85
>UNIPROTKB|Q8EJQ5 [details] [associations]
symbol:rhlB "ATP-dependent RNA helicase RhlB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 106 (42.4 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 24/48 (50%), Positives = 34/48 (70%)
Query: 10 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 57
PE + +AL + GF+ T IQ++ +P LL KDI G A+TG+GKT+AF
Sbjct: 18 PE-VKQALAENGFEFCTPIQALSLP-VLLQSKDIAGQAQTGTGKTMAF 63
Score = 57 (25.1 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 12/17 (70%), Positives = 15/17 (88%)
Query: 151 NKLYALILAPTRELAIQ 167
N+ A+I+APTRELAIQ
Sbjct: 83 NQPRAIIMAPTRELAIQ 99
>TIGR_CMR|SO_0407 [details] [associations]
symbol:SO_0407 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 106 (42.4 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 24/48 (50%), Positives = 34/48 (70%)
Query: 10 PETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAF 57
PE + +AL + GF+ T IQ++ +P LL KDI G A+TG+GKT+AF
Sbjct: 18 PE-VKQALAENGFEFCTPIQALSLP-VLLQSKDIAGQAQTGTGKTMAF 63
Score = 57 (25.1 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 12/17 (70%), Positives = 15/17 (88%)
Query: 151 NKLYALILAPTRELAIQ 167
N+ A+I+APTRELAIQ
Sbjct: 83 NQPRAIIMAPTRELAIQ 99
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 117 (46.2 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 26/58 (44%), Positives = 36/58 (62%)
Query: 8 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65
+ P+ ++ AL + F PT IQ P AL R D+VG A+TGSGKTLA+ +P + I
Sbjct: 96 SFPQYVMDALMDQNFTEPTPIQCQGFPLALSGR-DMVGIAQTGSGKTLAYLLPAIVHI 152
Score = 47 (21.6 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 10/12 (83%), Positives = 11/12 (91%)
Query: 156 LILAPTRELAIQ 167
L+LAPTRELA Q
Sbjct: 167 LVLAPTRELAQQ 178
>UNIPROTKB|F1NJA0 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 GeneTree:ENSGT00550000074969 IPI:IPI00590534
OMA:CACVEYW EMBL:AADN02034882 Ensembl:ENSGALT00000005224
Uniprot:F1NJA0
Length = 591
Score = 114 (45.2 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 27/69 (39%), Positives = 39/69 (56%)
Query: 4 WVKFNIPET--IIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 61
W +P + ++ AL GF T +QS +P ++ KD+ A TGSGKTLAF IPI
Sbjct: 9 WSSLPVPLSPGVLLALQDLGFDRMTPVQSATIP-LFMSNKDVAAEAVTGSGKTLAFVIPI 67
Query: 62 LTGIVNKLE 70
L ++ + E
Sbjct: 68 LEILLRREE 76
Score = 52 (23.4 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 147 KKTRNKLYALILAPTRELAIQ 167
K + ++ A+I+ PTRELAIQ
Sbjct: 77 KLKKMQVGAIIITPTRELAIQ 97
>UNIPROTKB|H0YI52 [details] [associations]
symbol:DDX23 "Probable ATP-dependent RNA helicase DDX23"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HGNC:HGNC:17347 EMBL:AC117498
Ensembl:ENST00000552802 Uniprot:H0YI52
Length = 152
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 29/62 (46%), Positives = 38/62 (61%)
Query: 4 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63
W ++P I+ + + G+K PT IQ +P L R DI+G AETGSGKT AF IP+L
Sbjct: 19 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTAAFLIPLLV 77
Query: 64 GI 65
I
Sbjct: 78 WI 79
>UNIPROTKB|I3L3F6 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR011545 Pfam:PF00270 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
EMBL:AC087741 InterPro:IPR014014 PROSITE:PS51195 HGNC:HGNC:18683
ChiTaRS:EIF4A3 Ensembl:ENST00000571793 Bgee:I3L3F6 Uniprot:I3L3F6
Length = 133
Score = 94 (38.1 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 11 ETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
E ++R +Y GF+ P+ IQ + + R D++ +++G+GKT F I +L
Sbjct: 47 EDLLRGIYAYGFEKPSAIQQRAIKQIIKGR-DVIAQSQSGTGKTATFSISVL 97
Score = 58 (25.5 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 12/13 (92%), Positives = 13/13 (100%)
Query: 155 ALILAPTRELAIQ 167
ALILAPTRELA+Q
Sbjct: 109 ALILAPTRELAVQ 121
>DICTYBASE|DDB_G0291804 [details] [associations]
symbol:ddx6 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0291804 GO:GO:0005524 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0006397 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
EMBL:AAFI02000185 RefSeq:XP_629938.1 HSSP:P39517
ProteinModelPortal:Q54E49 SMR:Q54E49 PRIDE:Q54E49
EnsemblProtists:DDB0234196 GeneID:8628344 KEGG:ddi:DDB_G0291804
OMA:QFMEKHL ProtClustDB:CLSZ2429504 Uniprot:Q54E49
Length = 423
Score = 106 (42.4 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 21/55 (38%), Positives = 35/55 (63%)
Query: 8 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
++ ++R +++KG+ P+ IQ +P AL R DI+ A+ G+GKT +F IP L
Sbjct: 55 HLKRDLLRGIFEKGYVKPSPIQEKAIPIALAGR-DIMARAKNGTGKTASFLIPAL 108
Score = 56 (24.8 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 149 TRNKLYALILAPTRELAIQ 167
T++ + LIL PTRELA+Q
Sbjct: 114 TKDVIQVLILVPTRELALQ 132
>RGD|1559513 [details] [associations]
symbol:RGD1559513 "similar to DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 RGD:1559513 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4CVG6K OMA:MEETETI
IPI:IPI00958592 Ensembl:ENSRNOT00000033492 UCSC:RGD:1559513
NextBio:667517 Uniprot:D4ADJ9
Length = 621
Score = 121 (47.7 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 24/57 (42%), Positives = 38/57 (66%)
Query: 6 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
+ +P I+R L +KG PT IQ +P+ +L+ +D++G A TGSGKTL F +P++
Sbjct: 184 EMKLPAAILRGLKKKGILHPTPIQIQGIPT-ILSGRDMIGIAFTGSGKTLVFTLPVI 239
Score = 45 (20.9 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 154 YALILAPTRELAIQ 167
Y LI+ P+RELA Q
Sbjct: 258 YGLIICPSRELARQ 271
>RGD|1311758 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0035458 "cellular response to interferon-beta"
evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0051607
"defense response to virus" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 RGD:1311758 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH474032 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOVERGEN:HBG015893 KO:K13116 CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:BC166825 IPI:IPI00565869
RefSeq:NP_001101516.1 UniGene:Rn.114971 SMR:B2RYL8
Ensembl:ENSRNOT00000018114 GeneID:314336 KEGG:rno:314336
UCSC:RGD:1311758 NextBio:667511 Genevestigator:B2RYL8
Uniprot:B2RYL8
Length = 622
Score = 121 (47.7 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 24/57 (42%), Positives = 38/57 (66%)
Query: 6 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
+ +P I+R L +KG PT IQ +P+ +L+ +D++G A TGSGKTL F +P++
Sbjct: 185 EMKLPAAILRGLKKKGILHPTPIQIQGIPT-ILSGRDMIGIAFTGSGKTLVFTLPVI 240
Score = 45 (20.9 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 154 YALILAPTRELAIQ 167
Y LI+ P+RELA Q
Sbjct: 259 YGLIICPSRELARQ 272
>CGD|CAL0000625 [details] [associations]
symbol:SPB4 species:5476 "Candida albicans" [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000027 "ribosomal large subunit assembly" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K14809 EMBL:AACQ01000202 EMBL:AACQ01000200
RefSeq:XP_711358.1 RefSeq:XP_711406.1 ProteinModelPortal:Q59NP8
STRING:Q59NP8 GeneID:3647008 GeneID:3647042 KEGG:cal:CaO19.11631
KEGG:cal:CaO19.4154 CGD:CAL0005749 Uniprot:Q59NP8
Length = 631
Score = 118 (46.6 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 3 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
E +++++ I A+ G+ T T +Q+ +P L KD+V A TGSGKTL+F IP+L
Sbjct: 11 ENLRYDLHPWIKEAISSMGYPTMTPVQASTIP-LLSGNKDVVVEAVTGSGKTLSFVIPVL 69
Query: 63 TGIVNKLENPTEEDE 77
I ++L P + +
Sbjct: 70 QKISDRLYKPDSDGD 84
Score = 48 (22.0 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 150 RNKLYALILAPTRELAIQ 167
R + +++L+PTRELA Q
Sbjct: 91 RGHMLSIVLSPTRELANQ 108
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 115 (45.5 bits), Expect = 7.1e-09, Sum P(2) = 7.1e-09
Identities = 21/48 (43%), Positives = 36/48 (75%)
Query: 15 RALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
+A+ ++G+ TP+ IQ+ +P A+L KD++ AA+TG+GKT F +P+L
Sbjct: 14 KAVSEQGYDTPSPIQAQAIP-AVLTGKDVMAAAQTGTGKTAGFTLPLL 60
Score = 49 (22.3 bits), Expect = 7.1e-09, Sum P(2) = 7.1e-09
Identities = 10/13 (76%), Positives = 11/13 (84%)
Query: 155 ALILAPTRELAIQ 167
AL+L PTRELA Q
Sbjct: 76 ALVLTPTRELAAQ 88
>TAIR|locus:2130918 [details] [associations]
symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
GermOnline:AT4G16630 Uniprot:Q9ZRZ8
Length = 789
Score = 118 (46.6 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 25/59 (42%), Positives = 37/59 (62%)
Query: 4 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
+++ N+ ++RA G+K PT IQ+ +P AL R D+ +A TGSGKT AF +P L
Sbjct: 169 FMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGR-DLCASAITGSGKTAAFALPTL 226
Score = 50 (22.7 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 10/12 (83%), Positives = 11/12 (91%)
Query: 156 LILAPTRELAIQ 167
LIL PTRELA+Q
Sbjct: 242 LILTPTRELAVQ 253
>ZFIN|ZDB-GENE-071022-2 [details] [associations]
symbol:ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
10" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-071022-2 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 EMBL:CR450711 IPI:IPI00898518
Ensembl:ENSDART00000125785 ArrayExpress:F1QMM9 Bgee:F1QMM9
Uniprot:F1QMM9
Length = 875
Score = 119 (46.9 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 3 EWVKFN---IPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 59
E VKF+ + + ++ L + ++ PT+IQ + AL R D++GAA+TGSGKTLAF I
Sbjct: 68 EAVKFSDFPLSKKTLKGLLEAQYRQPTEIQRQTIGFALQGR-DVLGAAKTGSGKTLAFLI 126
Query: 60 PIL 62
P+L
Sbjct: 127 PVL 129
Score = 50 (22.7 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 153 LYALILAPTRELAIQ 167
L ALI++PTRELA Q
Sbjct: 143 LGALIISPTRELAYQ 157
>GENEDB_PFALCIPARUM|PFF1500c [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA
helicase, putative" species:5833 "Plasmodium falciparum"
[GO:0016070 "RNA metabolic process" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AL844505 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
RefSeq:XP_966291.1 ProteinModelPortal:C6KTE4
EnsemblProtists:PFF1500c:mRNA GeneID:3885813 KEGG:pfa:PFF1500c
EuPathDB:PlasmoDB:PF3D7_0630900 ProtClustDB:CLSZ2514457
Uniprot:C6KTE4
Length = 601
Score = 119 (46.9 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 27/62 (43%), Positives = 41/62 (66%)
Query: 6 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65
+ NI + + + L + F T T+IQ+ +P L+ KDI+GAA+TGSGKTLAF +P + +
Sbjct: 152 ELNICDALKKGLKELNFVTLTEIQAKCIPH-FLSGKDILGAAKTGSGKTLAFLVPSINIL 210
Query: 66 VN 67
N
Sbjct: 211 YN 212
Score = 46 (21.3 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 150 RNKLYALILAPTRELAIQ 167
+N LI++PTREL +Q
Sbjct: 218 KNGTGVLIISPTRELCLQ 235
>UNIPROTKB|C6KTE4 [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA helicase,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 EMBL:AL844505 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_966291.1
ProteinModelPortal:C6KTE4 EnsemblProtists:PFF1500c:mRNA
GeneID:3885813 KEGG:pfa:PFF1500c EuPathDB:PlasmoDB:PF3D7_0630900
ProtClustDB:CLSZ2514457 Uniprot:C6KTE4
Length = 601
Score = 119 (46.9 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 27/62 (43%), Positives = 41/62 (66%)
Query: 6 KFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65
+ NI + + + L + F T T+IQ+ +P L+ KDI+GAA+TGSGKTLAF +P + +
Sbjct: 152 ELNICDALKKGLKELNFVTLTEIQAKCIPH-FLSGKDILGAAKTGSGKTLAFLVPSINIL 210
Query: 66 VN 67
N
Sbjct: 211 YN 212
Score = 46 (21.3 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 150 RNKLYALILAPTRELAIQ 167
+N LI++PTREL +Q
Sbjct: 218 KNGTGVLIISPTRELCLQ 235
WARNING: HSPs involving 372 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.132 0.363 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 167 144 0.00091 102 3 11 23 0.36 32
30 0.48 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 622
No. of states in DFA: 524 (56 KB)
Total size of DFA: 108 KB (2073 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 12.93u 0.08s 13.01t Elapsed: 00:00:06
Total cpu time: 12.96u 0.08s 13.04t Elapsed: 00:00:07
Start: Thu Aug 15 15:04:08 2013 End: Thu Aug 15 15:04:15 2013
WARNINGS ISSUED: 2