RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11948
(167 letters)
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 59.5 bits (143), Expect = 6e-12
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
+ + + + TI + ++ PT IQ +P A+L +DI+ A+TGSGKT AF IP
Sbjct: 20 IENFDELKLDPTIRNNILLASYQRPTPIQKNAIP-AILEHRDIMACAQTGSGKTAAFLIP 78
Query: 61 ILTGIVNKLENPTEEDENDSARKDIV 86
I+ +V + N + + I+
Sbjct: 79 IINHLVCQDLNQQRYSKTAYPKCLIL 104
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 57.0 bits (136), Expect = 3e-11
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 3 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
++ +F II A+ F PT+IQ ++P L + +VG ++TG+GKT A+ +P
Sbjct: 2 QFTRFPFQPFIIEAIKTLRFYKPTEIQERIIP-GALRGESMVGQSQTGTGKTHAYLLP 58
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 56.9 bits (136), Expect = 3e-11
Identities = 17/60 (28%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 3 EWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
E+ + + ++ +++ G++ P+ IQ +P L+ +DI+ A+ G+GK+ A+ IP+L
Sbjct: 4 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIP-IALSGRDILARAKNGTGKSGAYLIPLL 62
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 56.4 bits (135), Expect = 7e-11
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 1 MAEWVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIP 60
+ + N+ E+++R +Y GF+ P+ IQ + + D++ A++G+GKT F I
Sbjct: 11 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAIL-PCIKGYDVIAQAQSGTGKTATFAIS 69
Query: 61 ILTGIVNKLENP 72
IL I L+
Sbjct: 70 ILQQIELDLKAT 81
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 56.4 bits (135), Expect = 7e-11
Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 4 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 61
+ + E ++R +Y GF+ P+ IQ + ++ +D++ +++G+GKT F I +
Sbjct: 19 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIK-QIIKGRDVIAQSQSGTGKTATFSISV 75
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 56.1 bits (134), Expect = 8e-11
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 7 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPI 61
F + ++ +++ GF+ P+ IQ +P + +DI+ A+ G+GKT AF IP
Sbjct: 6 FYLKRELLMGIFEAGFEKPSPIQEEAIP-VAITGRDILARAKNGTGKTAAFVIPT 59
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 55.2 bits (132), Expect = 2e-10
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 4 WVKFNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILT 63
+ + E ++R ++ GF+ P+ IQ + ++ D++ A++G+GKT F I L
Sbjct: 12 FDDMELDENLLRGVFGYGFEEPSAIQQRAIM-PIIEGHDVLAQAQSGTGKTGTFSIAALQ 70
Query: 64 GIVNKLENP 72
I ++ P
Sbjct: 71 RIDTSVKAP 79
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 54.1 bits (129), Expect = 4e-10
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 7 FNIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIV 66
F + ++RA+ GF+ P+++Q +P + D++ A++G GKT F + L +
Sbjct: 6 FLLKPELLRAIVDCGFEHPSEVQHECIP-QAILGMDVLCQAKSGMGKTAVFVLATLQQLE 64
Query: 67 NKLENP 72
Sbjct: 65 PVTGQV 70
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 202
Score = 53.8 bits (128), Expect = 5e-10
Identities = 11/58 (18%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 8 NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGI 65
+I + L ++G + Q+ + + + K+++ A T +GKTL + ++
Sbjct: 9 SISSYAVGILKEEGIEELFPPQAEAVE-KVFSGKNLLLAMPTAAGKTLLAEMAMVREA 65
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 53.1 bits (127), Expect = 8e-10
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 3 EWVKF---NIPETIIRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 59
E++ F N+ + I+ A+ KGF+ PT IQ V+P L +IV A TGSGKT +F I
Sbjct: 2 EYMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAI 61
Query: 60 P 60
P
Sbjct: 62 P 62
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 49.5 bits (117), Expect = 2e-08
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 14 IRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
++K P IQ M +L ++ A TG GKT L
Sbjct: 33 FVEFFRKCVGEPRAIQKMWAK-RILRKESFAATAPTGVGKTSFGLAMSL 80
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia
coli [TaxId: 562]}
Length = 206
Score = 48.5 bits (114), Expect = 4e-08
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 1 MAEWVKFNIPETIIRALYQK-GFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGI 59
MA+ N+ + L + G++ Q ++ +L+ +D + TG GK+L + I
Sbjct: 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIID-TVLSGRDCLVVMPTGGGKSLCYQI 59
Query: 60 PI 61
P
Sbjct: 60 PA 61
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 46.5 bits (109), Expect = 3e-07
Identities = 16/93 (17%), Positives = 27/93 (29%), Gaps = 41/93 (44%)
Query: 75 EDENDSARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEE 134
ED+ ++ + G+GKT + I+ + +
Sbjct: 2 EDDIFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKR------------------------ 37
Query: 135 LEEESANTTEFVKKTRNKLYALILAPTRELAIQ 167
L LILAPTR +A +
Sbjct: 38 -----------------GLRTLILAPTRVVAAE 53
Score = 41.4 bits (96), Expect = 2e-05
Identities = 5/33 (15%), Positives = 13/33 (39%)
Query: 36 ALLARKDIVGAAETGSGKTLAFGIPILTGIVNK 68
++ + G+GKT + I+ + +
Sbjct: 5 IFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKR 37
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 38.6 bits (88), Expect = 1e-04
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 17 LYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPIL 62
+ ++ P Q ++ + + TG GKTL +
Sbjct: 2 VLRRDLIQPRIYQEVIYAKCK--ETNCLIVLPTGLGKTLIAMMIAE 45
Score = 29.4 bits (64), Expect = 0.15
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 82 RKDIVGAAETGSGKTLAFGIPIL 104
+ + TG GKTL +
Sbjct: 23 ETNCLIVLPTGLGKTLIAMMIAE 45
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 29.7 bits (65), Expect = 0.11
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 35 SALLAR-KDIVGAAETGSGKTLAFGIPIL 62
S +L + V G+GKT F IL
Sbjct: 1 SHMLKKGMTTVLDFHPGAGKTRRFLPQIL 29
Score = 28.9 bits (63), Expect = 0.16
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 83 KDIVGAAETGSGKTLAFGIPIL 104
V G+GKT F IL
Sbjct: 8 MTTVLDFHPGAGKTRRFLPQIL 29
>d3bnea1 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal domain
{Soybean (Glycine max), isozyme L1 [TaxId: 3847]}
Length = 690
Score = 26.4 bits (58), Expect = 2.3
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 8/64 (12%)
Query: 14 IRALYQKGFKTPTKIQSMVMPSALLARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPT 73
+ LY+ G K P + S ++P I T L F P +V ++
Sbjct: 140 VHDLYEGGIKLPRDVISTIIP-----LPVIKELYRTDGQHILKFPQP---HVVQVSQSAW 191
Query: 74 EEDE 77
DE
Sbjct: 192 MTDE 195
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 25.7 bits (56), Expect = 3.4
Identities = 9/46 (19%), Positives = 16/46 (34%)
Query: 107 IVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNK 152
I++ E P E E+ E L +E ++ + K
Sbjct: 69 IISGQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVK 114
>d1h6pa_ a.146.1.1 (A:) TRF2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 203
Score = 25.2 bits (55), Expect = 4.2
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 126 EEAEEVLEELEEESANTTEFVKKTRNKLYALI 157
E+A ++L++ + +K RN L +I
Sbjct: 130 EKASKILKKHMSKD----PTTQKLRNDLLNII 157
>d3bqoa1 a.146.1.1 (A:62-265) TRF1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 204
Score = 24.8 bits (54), Expect = 4.7
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 126 EEAEEVLEELEEESANTTEFVKKTRNKLYALI 157
+EAEEV E + + ++KL +I
Sbjct: 130 KEAEEVFERIFGDP----NSHMPFKSKLLMII 157
>d2a1ka1 b.40.4.7 (A:32-241) Gene 32 protein (gp32) core
{Enterobacteria phage RB69 [TaxId: 12353]}
Length = 210
Score = 24.9 bits (54), Expect = 5.0
Identities = 22/117 (18%), Positives = 36/117 (30%), Gaps = 8/117 (6%)
Query: 38 LARKDIVGAAETGSGKTLAFGIPILTGIVNKLENPTEEDENDSARKDIVGAAETGSGKTL 97
L KD G FG I I + TE E G
Sbjct: 89 LVVKDPQAPDNEGKVFKYRFGKKIWDKINAMIAVDTEMGETPVDVTCPW------EGANF 142
Query: 98 AFGIPILTGIVNKLENPTEEDENDSGLEEEAEEVLEELEEESANTTEFVKKTRNKLY 154
+ ++G N E+ +++E +EL E+ + +E K + K +
Sbjct: 143 VLKVKQVSGFSNYDESKFLNQSAIPNIDDE--SFQKELFEQMVDLSEMTSKDKFKSF 197
>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY,
DsbE) {Escherichia coli [TaxId: 562]}
Length = 136
Score = 24.2 bits (51), Expect = 6.3
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 4/34 (11%)
Query: 107 IVNKLENPTEEDENDSGLEEEAEEVLEELEEESA 140
I + EEE + + E+ +E+A
Sbjct: 107 IRYRHAGDLNPRV----WEEEIKPLWEKYSKEAA 136
>d1cewi_ d.17.1.2 (I:) Cystatin {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 108
Score = 23.8 bits (51), Expect = 8.4
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 114 PTEEDENDSGLEEEAEEVLEELEEESANTTEF 145
P DEND GL+ + + E S +
Sbjct: 3 PVPVDENDEGLQRALQFAMAEYNRASNDKYSS 34
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.309 0.130 0.347
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 595,356
Number of extensions: 26281
Number of successful extensions: 176
Number of sequences better than 10.0: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 41
Length of query: 167
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 88
Effective length of database: 1,322,926
Effective search space: 116417488
Effective search space used: 116417488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 49 (22.8 bits)