Query psy1195
Match_columns 223
No_of_seqs 202 out of 1263
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 23:05:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1195.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1195hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lsn_A Reverse transcriptase; 99.8 1.2E-21 4.2E-26 162.6 7.4 127 19-172 16-163 (165)
2 3h08_A RNH (ribonuclease H); R 99.8 2.8E-21 9.4E-26 154.1 6.0 125 19-172 13-144 (146)
3 3qio_A GAG-POL polyprotein; RN 99.8 6.2E-21 2.1E-25 155.2 8.0 121 19-172 21-147 (150)
4 3p1g_A Xenotropic murine leuke 99.8 9.2E-21 3.1E-25 157.0 8.2 120 19-172 32-156 (165)
5 1jl1_A Ribonuclease HI; RNAse 99.8 3E-20 1E-24 150.6 7.3 126 19-173 13-144 (155)
6 2e4l_A Ribonuclease HI, RNAse 99.8 4.5E-20 1.5E-24 150.2 7.9 125 19-172 15-145 (158)
7 1ril_A Ribonuclease H; hydrola 99.8 1.6E-19 5.6E-24 148.4 6.7 126 19-173 17-149 (166)
8 2qkb_A Ribonuclease H1, HS-RNA 99.8 7.7E-19 2.6E-23 141.5 10.1 125 19-172 16-151 (154)
9 1mu2_A HIV-2 RT; HIV-2 reverse 99.6 2.3E-16 7.8E-21 150.1 9.5 111 19-170 445-555 (555)
10 2kq2_A Ribonuclease H-related 99.6 4.5E-16 1.5E-20 125.4 1.8 115 24-173 18-138 (147)
11 2zd1_A Reverse transcriptase/r 99.6 2.8E-15 9.5E-20 142.7 7.0 110 19-169 448-557 (557)
12 3u3g_D Ribonuclease H, RNAse H 99.5 2.1E-14 7.2E-19 110.9 9.7 118 19-172 12-137 (140)
13 3hst_B Protein RV2228C/MT2287; 99.5 6.4E-14 2.2E-18 109.0 9.7 118 19-172 12-133 (141)
14 2ehg_A Ribonuclease HI; RNAse 99.5 2.1E-13 7.3E-18 108.3 9.4 117 19-172 10-134 (149)
15 1zbf_A Ribonuclease H-related 99.1 2.7E-11 9.2E-16 98.3 1.8 117 19-163 20-138 (142)
16 4htu_A Ribonuclease H, RNAse H 98.8 2.4E-09 8.1E-14 86.7 4.5 93 19-139 14-106 (134)
17 2ca6_A RAN GTPase-activating p 95.2 0.0029 9.9E-08 55.4 -0.3 9 15-23 306-314 (386)
18 3cx5_F Cytochrome B-C1 complex 71.9 0.79 2.7E-05 37.5 0.0 7 102-108 75-81 (146)
No 1
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.84 E-value=1.2e-21 Score=162.57 Aligned_cols=127 Identities=14% Similarity=0.005 Sum_probs=93.7
Q ss_pred ccCCCCc-----cceeEEEecCccccccCCCCCCcccc----hhhhhhhhhhhhHHHHHHHhhhhhhhhchHHHHHHHHH
Q psy1195 19 LSGLPDS-----EWLALVLIDSPRYLDNSGYDSGIFTY----LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFERE 89 (223)
Q Consensus 19 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (223)
|+||||| +|.|+|+.+.......++.....+++ .+|- ... ++..+.
T Consensus 16 c~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei-----------~Al--------------~~al~~ 70 (165)
T 2lsn_A 16 AIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEI-----------AAV--------------EFACKK 70 (165)
T ss_dssp EEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHH-----------HHH--------------HHHHHH
T ss_pred CCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHH-----------HHH--------------HHHHHH
Confidence 8999999 89999998765554544433322222 2211 111 233344
Q ss_pred HhhcCceEEEEecChhhHhhhccCC------CCCCCCchhhcccChhHHHHHHHHHhcCCceEEEEeccCCCC------c
Q psy1195 90 EEEERRKVTTYSENRQKTVEICPEA------VKIPPSAATILTKWPDDIQNFLILFLSKLDVQFVWVPSHVGI------A 157 (223)
Q Consensus 90 ~~~~~~~I~IfTDSqyaI~aI~~~~------~~~~~Sgq~il~~~~~i~q~i~~ll~~~~~V~~~WVPGHsGi------~ 157 (223)
....+++|.|||||+|++++|+.|. -|++.+++++.+ .++++.+..++...+.|.|.|||||+|+ +
T Consensus 71 al~~~~~v~I~TDS~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN--~dL~~~l~~~~~~~~~v~~~~VkgH~g~~~~~~~~ 148 (165)
T 2lsn_A 71 ALKIPGPVLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKH--ISKWKSIAECLSMKPDITIQHEKGHQPTNTSIHTE 148 (165)
T ss_dssp HHHSSSCEEEEESCHHHHHHHHTHHHHHHHTTSCSCSSSCCSS--HHHHHHHHHHHHHCTTCEEEECCSSSCSSSCHHHH
T ss_pred HhcCCCeEEEEeChHHHHhhhhhhhhhheeccccccCCCcccC--HHHHHHHHHHHhCCCCEEEEEEeCCCCccCCCCCh
Confidence 4566789999999999999998741 145677888877 4899999988877889999999999995 5
Q ss_pred cChHHHHHHHHHHhc
Q psy1195 158 GNEEADRLAKEALTS 172 (223)
Q Consensus 158 GNE~AD~LAk~Aa~~ 172 (223)
||++||+||++|+..
T Consensus 149 gNe~AD~LA~~gA~~ 163 (165)
T 2lsn_A 149 GNALADKLATQGSYV 163 (165)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhh
Confidence 899999999999864
No 2
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.83 E-value=2.8e-21 Score=154.11 Aligned_cols=125 Identities=22% Similarity=0.118 Sum_probs=91.4
Q ss_pred ccCCCCccceeEEEecCccccccCCCCCCcccchhhhhhhhhhhhHHHHHHHhhhhhhhhchHHHHHHHHHHhhcCceEE
Q psy1195 19 LSGLPDSEWLALVLIDSPRYLDNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVT 98 (223)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 98 (223)
|.|+|++.+.|+|+.++......+|.....+++..|- ... .+..+.. ..+++|.
T Consensus 13 ~~~n~g~~g~G~v~~~~~~~~~~~~~~~~~Tnn~aEl-----------~A~--------------~~AL~~~-~~~~~v~ 66 (146)
T 3h08_A 13 ASGNPGKGGWGALLMYGSSRKEISGYDPATTNNRMEL-----------MAA--------------IKGLEAL-KEPARVQ 66 (146)
T ss_dssp ESSTTEEEEEEEEEEETTEEEEEEEEEEEECHHHHHH-----------HHH--------------HHHHHTC-SSCCEEE
T ss_pred CCCCCCceEEEEEEEECCeeEEeecCCCCCcHHHHHH-----------HHH--------------HHHHHhc-CccCcEE
Confidence 6789999999999999887777777766556555443 111 2222222 2368999
Q ss_pred EEecChhhHhhhcc-C------CCCCCCCchhhcccChhHHHHHHHHHhcCCceEEEEeccCCCCccChHHHHHHHHHHh
Q psy1195 99 TYSENRQKTVEICP-E------AVKIPPSAATILTKWPDDIQNFLILFLSKLDVQFVWVPSHVGIAGNEEADRLAKEALT 171 (223)
Q Consensus 99 IfTDSqyaI~aI~~-~------~~~~~~Sgq~il~~~~~i~q~i~~ll~~~~~V~~~WVPGHsGi~GNE~AD~LAk~Aa~ 171 (223)
|||||+|++++|.+ | .-|+++++.++.+ .++++.+..++. ...|.|.|||||+|++||+.||+|||+|+.
T Consensus 67 I~tDS~~vi~~i~~~w~~~W~~~~w~~~~~~~v~n--~~l~~~~~~~~~-~~~v~~~~V~gH~g~~~N~~AD~LA~~a~~ 143 (146)
T 3h08_A 67 LYSDSAYLVNAMNEGWLKRWVKNGWKTAAKKPVEN--IDLWQEILKLTT-LHRVTFHKVKGHSDNPYNSRADELARLAIK 143 (146)
T ss_dssp EEESCHHHHHHHHSSHHHHHHHTTCC----CCCTT--HHHHHHHHHHHH-HSEEEEEECCC-CCSHHHHHHHHHHHHHHH
T ss_pred EEeChHHHHHHHHHHHHHHHHHCCCccCCCCCcCC--HHHHHHHHHHHh-hCceEEEEcCCcCCcHhHHHHHHHHHHHHH
Confidence 99999999999987 2 1134556677665 378888888775 467999999999999999999999999987
Q ss_pred c
Q psy1195 172 S 172 (223)
Q Consensus 172 ~ 172 (223)
.
T Consensus 144 ~ 144 (146)
T 3h08_A 144 E 144 (146)
T ss_dssp H
T ss_pred h
Confidence 5
No 3
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.83 E-value=6.2e-21 Score=155.17 Aligned_cols=121 Identities=15% Similarity=0.135 Sum_probs=83.3
Q ss_pred ccCCCCccceeEEEecCccccccCCCCCCcccchhhhhhhhhhhhHHHHHHHhhhhhhhhchHHHHHHHHHHhhcCceEE
Q psy1195 19 LSGLPDSEWLALVLIDSPRYLDNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVT 98 (223)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 98 (223)
|+||||+.+.|+|+.++... ..+ ....+++..|- .-..++....+++|.
T Consensus 21 ~~~n~g~~g~G~v~~~~~~~-~~~--~~~~Tnn~aEl----------------------------~A~i~AL~~~~~~v~ 69 (150)
T 3qio_A 21 ANRETKLGKAGYVTNRGRQK-VVT--LTDTTNQKTEL----------------------------QAIYLALQDSGLEVN 69 (150)
T ss_dssp ECTTTCCEEEEEEETTSCEE-EEE--ESSCCHHHHHH----------------------------HHHHHHHHHSCSEEE
T ss_pred CCCCCCCeEEEEEEEcCCEE-EEe--CCCCCHHHHHH----------------------------HHHHHHHHhCCCcEE
Confidence 78999999999999886432 121 23444444433 112222222368999
Q ss_pred EEecChhhHhhhccCC------CCCCCCchhhcccChhHHHHHHHHHhcCCceEEEEeccCCCCccChHHHHHHHHHHhc
Q psy1195 99 TYSENRQKTVEICPEA------VKIPPSAATILTKWPDDIQNFLILFLSKLDVQFVWVPSHVGIAGNEEADRLAKEALTS 172 (223)
Q Consensus 99 IfTDSqyaI~aI~~~~------~~~~~Sgq~il~~~~~i~q~i~~ll~~~~~V~~~WVPGHsGi~GNE~AD~LAk~Aa~~ 172 (223)
|||||+|++++|++|. -|++.+|+++.+ .++++.+..++.+...|.|.|||||+|++||++||+||++|+..
T Consensus 70 i~tDS~~v~~~i~~w~~~W~~~gw~~~~g~~v~n--~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 70 IVTDSQYALGIITQWIHNWKKRGWKTADKKPVKN--VDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp EEESCHHHHHHHHHHHHHHCC------------C--HHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred EEeCcHHHHHHHHHHHHHHhhcCcCcCcCccccc--HHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 9999999999998751 134556667666 48888888777788899999999999999999999999998865
No 4
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.83 E-value=9.2e-21 Score=157.01 Aligned_cols=120 Identities=15% Similarity=0.164 Sum_probs=94.6
Q ss_pred ccCCCCccceeEEEecCccccccCCCCCCcccchhhhhhhhhhhhHHHHHHHhhhhhhhhchHHHHHHHHHHhhcCceEE
Q psy1195 19 LSGLPDSEWLALVLIDSPRYLDNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVT 98 (223)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 98 (223)
|.||||+.+.|+||++....+..++...+.+++..|- ... -...+.. +.++|.
T Consensus 32 ~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl-----------~Ai--------------~~AL~~~--~~~~v~ 84 (165)
T 3p1g_A 32 SFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAEL-----------IAL--------------TQALKMA--EGKKLN 84 (165)
T ss_dssp EEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHH-----------HHH--------------HHHHHHT--BTSEEE
T ss_pred cCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHH-----------HHH--------------HHHHHHc--cCceEE
Confidence 7789999999999999887776666656666666655 222 2333333 478999
Q ss_pred EEecChhhHhhhccCCCCCCCCchhhcccChhHHHHHHHHHhcCCceEEEEeccCCC-----CccChHHHHHHHHHHhc
Q psy1195 99 TYSENRQKTVEICPEAVKIPPSAATILTKWPDDIQNFLILFLSKLDVQFVWVPSHVG-----IAGNEEADRLAKEALTS 172 (223)
Q Consensus 99 IfTDSqyaI~aI~~~~~~~~~Sgq~il~~~~~i~q~i~~ll~~~~~V~~~WVPGHsG-----i~GNE~AD~LAk~Aa~~ 172 (223)
|||||+|++++| | .+++|+++.+ .++++.+...+..+..|.|.|||||+| ++||++||+|||+|+..
T Consensus 85 I~tDS~~vi~~i--w---~~~~g~~v~n--~dl~~~l~~~l~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~ 156 (165)
T 3p1g_A 85 VYTDSRYAFATA--H---VHSEGREIKN--KNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMK 156 (165)
T ss_dssp EEECCHHHHHHH--H---SCCCSCCCSS--HHHHHHHHHHTTSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEchHHHHhhh--h---cccCCCcccC--HHHHHHHHHHHhcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhc
Confidence 999999999998 2 2566777766 477888866666788999999999999 99999999999999987
No 5
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.81 E-value=3e-20 Score=150.59 Aligned_cols=126 Identities=17% Similarity=0.071 Sum_probs=93.0
Q ss_pred ccCCCCccceeEEEecCccccccCCCCCCcccchhhhhhhhhhhhHHHHHHHhhhhhhhhchHHHHHHHHHHhhcCceEE
Q psy1195 19 LSGLPDSEWLALVLIDSPRYLDNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVT 98 (223)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 98 (223)
|.|||++.|.|+|+.+.......+|.....+++..|- ... -...+.. ..+++|.
T Consensus 13 ~~~n~~~~G~G~v~~~~~~~~~~~~~~~~~tn~~aEl-----------~A~--------------~~aL~~~-~~~~~v~ 66 (155)
T 1jl1_A 13 ALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMEL-----------MAA--------------IVALEAL-KEHAEVI 66 (155)
T ss_dssp ESSTTEEEEEEEEEEETTEEEEEEEEEEEECHHHHHH-----------HHH--------------HHHHHTC-CSCCEEE
T ss_pred cCCCCCceEEEEEEEECCeEEEEecCCCCCcHHHHHH-----------HHH--------------HHHHHHh-CcCCcEE
Confidence 6789999999999998766566666554445554433 111 1222222 2247999
Q ss_pred EEecChhhHhhhccCC------CCCCCCchhhcccChhHHHHHHHHHhcCCceEEEEeccCCCCccChHHHHHHHHHHhc
Q psy1195 99 TYSENRQKTVEICPEA------VKIPPSAATILTKWPDDIQNFLILFLSKLDVQFVWVPSHVGIAGNEEADRLAKEALTS 172 (223)
Q Consensus 99 IfTDSqyaI~aI~~~~------~~~~~Sgq~il~~~~~i~q~i~~ll~~~~~V~~~WVPGHsGi~GNE~AD~LAk~Aa~~ 172 (223)
|||||+|++++|..|. -|.+++|+++.+ .++++.+..++. ...|.|.|||||+|++||+.||+||+.|+..
T Consensus 67 I~tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v~n--~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 143 (155)
T 1jl1_A 67 LSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKN--VDLWQRLDAALG-QHQIKWEWVKGHAGHPENERADELARAAAMN 143 (155)
T ss_dssp EEECCHHHHHHHHTTHHHHHHTTTBCTTSCBCTT--HHHHHHHHHHTT-TCEEEEEECCSSTTCHHHHHHHHHHHHHHHS
T ss_pred EEeCHHHHHHHHHHHHHHHhhcccccccCCccCC--HHHHHHHHHHHc-cCceEEEEcCCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999741 134556777765 478888888764 5799999999999999999999999999987
Q ss_pred C
Q psy1195 173 A 173 (223)
Q Consensus 173 ~ 173 (223)
.
T Consensus 144 ~ 144 (155)
T 1jl1_A 144 P 144 (155)
T ss_dssp C
T ss_pred c
Confidence 3
No 6
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.80 E-value=4.5e-20 Score=150.24 Aligned_cols=125 Identities=18% Similarity=0.056 Sum_probs=92.8
Q ss_pred ccCCCCccceeEEEecCccccccCCCCCCcccchhhhhhhhhhhhHHHHHHHhhhhhhhhchHHHHHHHHHHhhcCceEE
Q psy1195 19 LSGLPDSEWLALVLIDSPRYLDNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVT 98 (223)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 98 (223)
|.|||++.|.|+|+.++......+|.....+++..|- ... ....+.. ..+++|.
T Consensus 15 ~~~n~g~~G~G~v~~~~~~~~~~~~~~~~~tn~~aEl-----------~A~--------------~~AL~~~-~~~~~v~ 68 (158)
T 2e4l_A 15 CLGNPGPGGYGIVMNYKGHTKEMSDGFSLTTNNRMEL-----------LAP--------------IVALEAL-KEPCKII 68 (158)
T ss_dssp ESSSSEEEEEEEEEEETTEEEEEEEEEEEECHHHHHH-----------HHH--------------HHHHHTC-SSCCEEE
T ss_pred ccCCCCcEEEEEEEEECCEEEEEecCcCCCccHHHHH-----------HHH--------------HHHHHHh-ccCCeEE
Confidence 6789999999999998766556666555455554443 111 2222222 2347999
Q ss_pred EEecChhhHhhhccCC------CCCCCCchhhcccChhHHHHHHHHHhcCCceEEEEeccCCCCccChHHHHHHHHHHhc
Q psy1195 99 TYSENRQKTVEICPEA------VKIPPSAATILTKWPDDIQNFLILFLSKLDVQFVWVPSHVGIAGNEEADRLAKEALTS 172 (223)
Q Consensus 99 IfTDSqyaI~aI~~~~------~~~~~Sgq~il~~~~~i~q~i~~ll~~~~~V~~~WVPGHsGi~GNE~AD~LAk~Aa~~ 172 (223)
|||||+|++++|..|. -|.+++|+++.+ .++++.+..++. ...|.|.|||||+|++||+.||+||+.|+..
T Consensus 69 I~tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v~n--~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 69 LTSDSQYMRQGIMTWIHGWKKKGWMTSNRTPVKN--VDLWKRLDKAAQ-LHQIDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp EEECCHHHHHHHHTHHHHHHHTTTBCTTSSBCTT--HHHHHHHHHHHT-TSEEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred EEeCHHHHHHHHHHHHHHHHHccccccCCCcccC--HHHHHHHHHHHc-cCcEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 9999999999999831 123556677665 478888888774 5799999999999999999999999999986
No 7
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.78 E-value=1.6e-19 Score=148.41 Aligned_cols=126 Identities=18% Similarity=0.092 Sum_probs=93.1
Q ss_pred ccCCCCccceeEEEecCccccccCCCCCCcccchhhhhhhhhhhhHHHHHHHhhhhhhhhchHHHHHHHHHHhhcCceEE
Q psy1195 19 LSGLPDSEWLALVLIDSPRYLDNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVT 98 (223)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 98 (223)
|.|||++.+.|+||.+.......+|.....+++..|- ... -+..+.. ...++|.
T Consensus 17 ~~~n~g~~G~G~v~~~~~~~~~~~~~~~~~Tnn~aEl-----------~Ai--------------~~AL~~~-~~~~~v~ 70 (166)
T 1ril_A 17 CLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMEL-----------KAA--------------IEGLKAL-KEPCEVD 70 (166)
T ss_dssp ESSTTEEEEEEEEECBTTBCCEECCEEEEECHHHHHH-----------HHH--------------HHHHHSC-CSCCEEE
T ss_pred ccCCCCCEEEEEEEEECCEEEEEecCCCCCcHHHHHH-----------HHH--------------HHHHHHh-ccCCeEE
Confidence 6789999999999998766566666554445554443 111 1222211 2346899
Q ss_pred EEecChhhHhhhcc-CC------CCCCCCchhhcccChhHHHHHHHHHhcCCceEEEEeccCCCCccChHHHHHHHHHHh
Q psy1195 99 TYSENRQKTVEICP-EA------VKIPPSAATILTKWPDDIQNFLILFLSKLDVQFVWVPSHVGIAGNEEADRLAKEALT 171 (223)
Q Consensus 99 IfTDSqyaI~aI~~-~~------~~~~~Sgq~il~~~~~i~q~i~~ll~~~~~V~~~WVPGHsGi~GNE~AD~LAk~Aa~ 171 (223)
|||||+|++++|.+ |. -|.+++|+++.+ .++++.+..++. ...|.|.|||||+|++||+.||+||+.|+.
T Consensus 71 I~tDS~~vi~~i~~~w~~~W~~~~w~~~~g~~v~n--~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~ 147 (166)
T 1ril_A 71 LYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKN--RDLWEALLLAMA-PHRVRFHFVKGHTGHPENERVDREARRQAQ 147 (166)
T ss_dssp EECCCHHHHHHHHSSHHHHHHHTTSBCTTSSBCTT--HHHHHHHHHHHT-TSEEECCCCCGGGSCTHHHHHHHHHHHHHT
T ss_pred EEeChHHHHHHHhhhHHHHHHhcccccccCCccCc--HHHHHHHHHHHh-cCeEEEEEeeCCCCchhHHHHHHHHHHHHH
Confidence 99999999999998 21 134566777765 378888888775 579999999999999999999999999998
Q ss_pred cC
Q psy1195 172 SA 173 (223)
Q Consensus 172 ~~ 173 (223)
..
T Consensus 148 ~~ 149 (166)
T 1ril_A 148 SQ 149 (166)
T ss_dssp SS
T ss_pred Hh
Confidence 74
No 8
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.78 E-value=7.7e-19 Score=141.50 Aligned_cols=125 Identities=20% Similarity=0.190 Sum_probs=88.8
Q ss_pred ccCCCCc---cceeEEEecCccccccCCCCCC-cccchhhhhhhhhhhhHHHHHHHhhhhhhhhchHHHHHHHHHHh-hc
Q psy1195 19 LSGLPDS---EWLALVLIDSPRYLDNSGYDSG-IFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEE-EE 93 (223)
Q Consensus 19 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 93 (223)
|.|||++ +|.|+|+.|+.. ...|+...| .+++..|- ... ....+... ..
T Consensus 16 ~~~n~~~~~~aG~Gvv~~~~~~-~~~~~~l~~~~tn~~aEl-----------~A~--------------~~aL~~~~~~~ 69 (154)
T 2qkb_A 16 CSSNGRRRPRAGIGVYWGPGHP-LNVGIRLPGRQTNQRAEI-----------HAA--------------CKAIEQAKTQN 69 (154)
T ss_dssp EETTTSSSCEEEEEEECSTTCT-TCEEEECCSSCCHHHHHH-----------HHH--------------HHHHHHHHHTT
T ss_pred cCCCCCCCCcEEEEEEEECCCc-eeEEeecCCCCchHHHHH-----------HHH--------------HHHHHHHHhCC
Confidence 6688876 899999998643 234444443 34444433 111 22233332 34
Q ss_pred CceEEEEecChhhHhhhccCC------CCCCCCchhhcccChhHHHHHHHHHhcCCceEEEEeccCCCCccChHHHHHHH
Q psy1195 94 RRKVTTYSENRQKTVEICPEA------VKIPPSAATILTKWPDDIQNFLILFLSKLDVQFVWVPSHVGIAGNEEADRLAK 167 (223)
Q Consensus 94 ~~~I~IfTDSqyaI~aI~~~~------~~~~~Sgq~il~~~~~i~q~i~~ll~~~~~V~~~WVPGHsGi~GNE~AD~LAk 167 (223)
.++|.|||||+|++++|..+. -|++++++++.+ .++++.+..++. +..|.|.|||||+|++||+.||+||+
T Consensus 70 ~~~v~i~tDS~~vi~~i~~~~~~w~~~~w~~~~~~~~~n--~~l~~~i~~l~~-~~~v~~~~V~~H~g~~~N~~AD~LA~ 146 (154)
T 2qkb_A 70 INKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKEVIN--KEDFVALERLTQ-GMDIQWMHVPGHSGFIGNEEADRLAR 146 (154)
T ss_dssp CCEEEEEESCHHHHHHHHTHHHHHHTTTSBCTTSSBCTT--HHHHHHHHHHHT-TCEEEEEECCTTSSCHHHHHHHHHHH
T ss_pred CceEEEEECcHHHHhhhhhhHHHHHhccccccCCCcccc--HHHHHHHHHHHc-CCceEEEEccCCCCCHhHHHHHHHHH
Confidence 579999999999999999741 134556666655 378888888774 67799999999999999999999999
Q ss_pred HHHhc
Q psy1195 168 EALTS 172 (223)
Q Consensus 168 ~Aa~~ 172 (223)
.|+..
T Consensus 147 ~a~~~ 151 (154)
T 2qkb_A 147 EGAKQ 151 (154)
T ss_dssp HHHTC
T ss_pred HHHHh
Confidence 99875
No 9
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.65 E-value=2.3e-16 Score=150.12 Aligned_cols=111 Identities=17% Similarity=0.202 Sum_probs=82.1
Q ss_pred ccCCCCccceeEEEecCccccccCCCCCCcccchhhhhhhhhhhhHHHHHHHhhhhhhhhchHHHHHHHHHHhhcCceEE
Q psy1195 19 LSGLPDSEWLALVLIDSPRYLDNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVT 98 (223)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 98 (223)
|.||||+.+.|+|++++... ++.....+++..|- +--..+.....++|.
T Consensus 445 ~~~n~g~~g~G~v~~~~~~~---~~~~~~~TNn~aEl----------------------------~A~i~aL~~~~~~v~ 493 (555)
T 1mu2_A 445 CNRQSKEGKAGYVTDRGKDK---VKKLEQTTNQQAEL----------------------------EAFAMALTDSGPKVN 493 (555)
T ss_dssp ECTTTCCEEEEEEETTSCEE---EEEESSCCHHHHHH----------------------------HHHHHHHHTSCSEEE
T ss_pred ccCCCCCceEEEEEEeCCEe---eccCCCCCHHHHHH----------------------------HHHHHHHHcCCCeEE
Confidence 67899999999999987533 34444455555543 122222223678999
Q ss_pred EEecChhhHhhhccCCCCCCCCchhhcccChhHHHHHHHHHhcCCceEEEEeccCCCCccChHHHHHHHHHH
Q psy1195 99 TYSENRQKTVEICPEAVKIPPSAATILTKWPDDIQNFLILFLSKLDVQFVWVPSHVGIAGNEEADRLAKEAL 170 (223)
Q Consensus 99 IfTDSqyaI~aI~~~~~~~~~Sgq~il~~~~~i~q~i~~ll~~~~~V~~~WVPGHsGi~GNE~AD~LAk~Aa 170 (223)
|||||+||+++|.+|. +.++ ..+++.+..++..+..|.|.|||||+|++||+.||+||++|+
T Consensus 494 I~tDS~~v~~~i~~~~---~~~~-------~~l~~~~~~~~~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 494 IIVDSQYVMGIVASQP---TESE-------SKIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp EEESCHHHHHHHHTCC---SEES-------CHHHHHHHHHHHHCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred EEEehHHHHHHHhccc---cccc-------HHHHHHHHHHhccCCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 9999999999999843 2222 356677777666788999999999999999999999999874
No 10
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.56 E-value=4.5e-16 Score=125.39 Aligned_cols=115 Identities=13% Similarity=-0.026 Sum_probs=73.3
Q ss_pred CccceeEEEecCccccccCC---CCC---CcccchhhhhhhhhhhhHHHHHHHhhhhhhhhchHHHHHHHHHHhhcCceE
Q psy1195 24 DSEWLALVLIDSPRYLDNSG---YDS---GIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKV 97 (223)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 97 (223)
|++|.|+||.+.+.....++ +.. ..+++..|- ... .+..+.....+.+|
T Consensus 18 g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl-----------~A~--------------~~AL~~a~~~~~~v 72 (147)
T 2kq2_A 18 GQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEI-----------AAA--------------LYAVKKASQLGVKI 72 (147)
T ss_dssp TBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHH-----------HHH--------------HHHHHHHHHHTCCC
T ss_pred CCcEEEEEEEECCEEEEEEeccccccccccccHHHHHH-----------HHH--------------HHHHHHHHHCCCeE
Confidence 89999999998766555554 222 135666554 222 33333222223389
Q ss_pred EEEecChhhHhhhccCCCCCCCCchhhcccChhHHHHHHHHHhcCCceEEEEeccCCCCccChHHHHHHHHHHhcC
Q psy1195 98 TTYSENRQKTVEICPEAVKIPPSAATILTKWPDDIQNFLILFLSKLDVQFVWVPSHVGIAGNEEADRLAKEALTSA 173 (223)
Q Consensus 98 ~IfTDSqyaI~aI~~~~~~~~~Sgq~il~~~~~i~q~i~~ll~~~~~V~~~WVPGHsGi~GNE~AD~LAk~Aa~~~ 173 (223)
.|||||+.+.+-+...+ .++.+.++.. .++++ .+. . .|.|.|||||+|++||+.||+||++|+...
T Consensus 73 ~I~tDS~~i~~w~~~~w--~~~~~~~~~~--~~l~~---~l~-~--~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~ 138 (147)
T 2kq2_A 73 RILHDYAGIAFWATGEW--KAKNEFTQAY--AKLMN---QYR-G--IYSFEKVKAHSGNEFNDYVDMKAKSALGIR 138 (147)
T ss_dssp CBSSCCSTHHHHTTSSS--SCCHHHHHHH--HCGGG---GGS-T--TCCBCCCCCCCCCHHHHHHHHHHHHHHTCC
T ss_pred EEEECcHHHHHHHhCCC--ccCCcchHHH--HHHHH---Hhc-C--CeeEEEecCcCCCcchHHHHHHHHHHHhcc
Confidence 99999998776554422 2222222211 12222 221 2 899999999999999999999999999874
No 11
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.56 E-value=2.8e-15 Score=142.72 Aligned_cols=110 Identities=16% Similarity=0.187 Sum_probs=76.0
Q ss_pred ccCCCCccceeEEEecCccccccCCCCCCcccchhhhhhhhhhhhHHHHHHHhhhhhhhhchHHHHHHHHHHhhcCceEE
Q psy1195 19 LSGLPDSEWLALVLIDSPRYLDNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVT 98 (223)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 98 (223)
|.||||+.+.|+|+.++....- + ....+++..|- +.. ....+. -.++|.
T Consensus 448 ~~~n~g~~g~g~v~~~~~~~~~--~-~~~~TNn~aEl-----------~Ai--------------~~aL~~---~~~~v~ 496 (557)
T 2zd1_A 448 ANRETKLGKAGYVTNKGRQKVV--P-LTNTTNQKTEL-----------QAI--------------YLALQD---SGLEVN 496 (557)
T ss_dssp ECTTTCCEEEEEEETTSCEEEE--E-ECSCCHHHHHH-----------HHH--------------HHHHHH---SCSEEE
T ss_pred CCCCCCceEEEEEEECCcEEEe--c-CCCCCHHHHHH-----------HHH--------------HHHHHh---CCCcEE
Confidence 6689999999999987654332 2 22344555443 121 222232 278999
Q ss_pred EEecChhhHhhhccCCCCCCCCchhhcccChhHHHHHHHHHhcCCceEEEEeccCCCCccChHHHHHHHHH
Q psy1195 99 TYSENRQKTVEICPEAVKIPPSAATILTKWPDDIQNFLILFLSKLDVQFVWVPSHVGIAGNEEADRLAKEA 169 (223)
Q Consensus 99 IfTDSqyaI~aI~~~~~~~~~Sgq~il~~~~~i~q~i~~ll~~~~~V~~~WVPGHsGi~GNE~AD~LAk~A 169 (223)
||||||||+++|.++. .+++ .++++.+...+.....|.|.|||||+|++||+.||+||++|
T Consensus 497 I~tDS~~vi~~i~~~~---~~~~-------~~l~~~~~~~l~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 497 IVTDSQYALGIIQAQP---DKSE-------SELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp EEECCHHHHHHHTTCC---SEES-------SHHHHHHHHHHHHCSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred EEeChHHHHHHHhcCC---ccCC-------HHHHHHHHHHHhcCCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 9999999999999853 2222 25666666555556789999999999999999999999976
No 12
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.55 E-value=2.1e-14 Score=110.94 Aligned_cols=118 Identities=19% Similarity=0.233 Sum_probs=78.9
Q ss_pred ccCCCCccceeEEEecC-cccc-ccCCCCCCcccchhhhhhhhhhhhHHHHHHHhhhhhhhhchHHHHHHHHHHhh-cCc
Q psy1195 19 LSGLPDSEWLALVLIDS-PRYL-DNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEE-ERR 95 (223)
Q Consensus 19 ~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 95 (223)
|.|+||++|.|+|+.|. ++.+ ..++.....+++..|- ... -...+.... ..+
T Consensus 12 ~~~n~g~~G~G~v~~~~~g~~~~~~~~~~~~~tn~~aEl-----------~A~--------------~~aL~~a~~~~~~ 66 (140)
T 3u3g_D 12 ARGNPGPAGIGVVITDEKGNTLHESSAYIGETTNNVAEY-----------EAL--------------IRALEDLQMFGDK 66 (140)
T ss_dssp ESSTTEEEEEEEEEECTTSCEEEEEEEEEEEECHHHHHH-----------HHH--------------HHHHHHHGGGGGG
T ss_pred CCCCCCCcEEEEEEEeCCCCEEEEEEeeCCCCchHHHHH-----------HHH--------------HHHHHHHHHcCCC
Confidence 67899999999999983 3333 5555554445544433 111 222333222 234
Q ss_pred ----eEEEEecChhhHhhhccCCCCCCCCchhhcccChhHHHHHHHH-HhcCCceEEEEeccCCCCccChHHHHHHHHHH
Q psy1195 96 ----KVTTYSENRQKTVEICPEAVKIPPSAATILTKWPDDIQNFLIL-FLSKLDVQFVWVPSHVGIAGNEEADRLAKEAL 170 (223)
Q Consensus 96 ----~I~IfTDSqyaI~aI~~~~~~~~~Sgq~il~~~~~i~q~i~~l-l~~~~~V~~~WVPGHsGi~GNE~AD~LAk~Aa 170 (223)
+|.|||||+|+++++++++ +..... +. .+++.+..+ +.+...|+|.|||+ +||+.||+||+.|+
T Consensus 67 ~~~~~v~i~tDS~~vi~~i~~~~---~~~~~~-l~---~~~~~i~~l~~~~~~~v~~~~V~~----~~N~~AD~LA~~a~ 135 (140)
T 3u3g_D 67 LVDMEVEVRMDSELIVRQMQGVY---KVKEPT-LK---EKFAKIAHIKMERVPNLVFVHIPR----EKNARADELVNEAI 135 (140)
T ss_dssp GTTCEEEEEESCHHHHHHHTTSS---CCCCGG-GH---HHHHHHHHHHHHHCTTCEEEECCG----GGGHHHHHHHHHHH
T ss_pred CCCceEEEEeChHHHHHHhCCCc---ccCCHH-HH---HHHHHHHHHhhcCCCcEEEEEcCc----hhhHHHHHHHHHHH
Confidence 8999999999999999853 111111 11 355666666 65557999999994 89999999999998
Q ss_pred hc
Q psy1195 171 TS 172 (223)
Q Consensus 171 ~~ 172 (223)
..
T Consensus 136 ~~ 137 (140)
T 3u3g_D 136 DK 137 (140)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 13
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.51 E-value=6.4e-14 Score=109.04 Aligned_cols=118 Identities=14% Similarity=0.101 Sum_probs=79.4
Q ss_pred ccCCCCccceeEEEecCc--c-ccccCCCCCCcccchhhhhhhhhhhhHHHHHHHhhhhhhhhchHHHHHHHHHH-hhcC
Q psy1195 19 LSGLPDSEWLALVLIDSP--R-YLDNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREE-EEER 94 (223)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 94 (223)
|.|+||+.|.|+||.|.. . ....++.....+++..|- ... -...+.. ....
T Consensus 12 ~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~~~~tn~~aEl-----------~A~--------------~~aL~~a~~~~~ 66 (141)
T 3hst_B 12 SRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEY-----------RGL--------------IAGLDDAVKLGA 66 (141)
T ss_dssp ESSSSEEEEEEEEEEETTSCSEEEEEEEEEEEECHHHHHH-----------HHH--------------HHHHHHHHHHTC
T ss_pred CCCCCCCcEEEEEEEeCCCCcEEEeeeccCCCCchHHHHH-----------HHH--------------HHHHHHHHHCCC
Confidence 679999999999999863 2 234555554555554443 111 1222222 2346
Q ss_pred ceEEEEecChhhHhhhccCCCCCCCCchhhcccChhHHHHHHHHHhcCCceEEEEeccCCCCccChHHHHHHHHHHhc
Q psy1195 95 RKVTTYSENRQKTVEICPEAVKIPPSAATILTKWPDDIQNFLILFLSKLDVQFVWVPSHVGIAGNEEADRLAKEALTS 172 (223)
Q Consensus 95 ~~I~IfTDSqyaI~aI~~~~~~~~~Sgq~il~~~~~i~q~i~~ll~~~~~V~~~WVPGHsGi~GNE~AD~LAk~Aa~~ 172 (223)
++|.|||||+|+++.|++.+ +.... .+. .+++.+..++.+...|.|.|||+ ++|+.||+||+.|+..
T Consensus 67 ~~v~i~tDS~~vv~~i~~~~---~~~~~-~l~---~~~~~i~~l~~~~~~v~~~~V~~----~~N~~AD~LA~~a~~~ 133 (141)
T 3hst_B 67 TEAAVLMDSKLVVEQMSGRW---KVKHP-DLL---KLYVQAQALASQFRRINYEWVPR----ARNTYADRLANDAMDA 133 (141)
T ss_dssp SEEEEEESCHHHHHHHTTSS---CCCSH-HHH---HHHHHHHHHHTTSSEEEEEECCG----GGCHHHHHHHHHHHHH
T ss_pred ceEEEEeChHHHHHHHhCCc---ccCCH-HHH---HHHHHHHHHHhcCCeEEEEEcCC----cccHHHHHHHHHHHHH
Confidence 78999999999999999743 11111 111 34455666665678999999995 8999999999999876
No 14
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.46 E-value=2.1e-13 Score=108.27 Aligned_cols=117 Identities=15% Similarity=0.115 Sum_probs=78.3
Q ss_pred cc-CCCCccce-eEEEecCccccccCCCCC-----CcccchhhhhhhhhhhhHHHHHHHhhhhhhhhchHHHHHHHHHH-
Q psy1195 19 LS-GLPDSEWL-ALVLIDSPRYLDNSGYDS-----GIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREE- 90 (223)
Q Consensus 19 ~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 90 (223)
|. ||||++|. |+||.|.+..+..++... ..+++..|- ... ....+..
T Consensus 10 ~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl-----------~A~--------------~~aL~~a~ 64 (149)
T 2ehg_A 10 CEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEY-----------SGL--------------ICLMETML 64 (149)
T ss_dssp EESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHH-----------HHH--------------HHHHHHHH
T ss_pred cCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHH-----------HHH--------------HHHHHHHH
Confidence 55 89999998 999998666654333222 233333332 111 1222222
Q ss_pred hhcCceEEEEecChhhHhhhccCCCCCCCCchhhcccChhHHHHHHHHHhcCCceEEEEeccCCCCccChHHHHHHHHHH
Q psy1195 91 EEERRKVTTYSENRQKTVEICPEAVKIPPSAATILTKWPDDIQNFLILFLSKLDVQFVWVPSHVGIAGNEEADRLAKEAL 170 (223)
Q Consensus 91 ~~~~~~I~IfTDSqyaI~aI~~~~~~~~~Sgq~il~~~~~i~q~i~~ll~~~~~V~~~WVPGHsGi~GNE~AD~LAk~Aa 170 (223)
....++|.|||||+++++.|++++. .++ . .. ..+++.+..++... .|.|.|||| ++|+.||+||+.|+
T Consensus 65 ~~g~~~v~i~tDS~~vi~~i~~~w~--~~~-~-~~---~~l~~~i~~l~~~~-~v~~~~V~~----~~N~~AD~LA~~a~ 132 (149)
T 2ehg_A 65 RLGISSPIIKGDSQLVIKQMNGEYK--VKA-K-RI---IPLYEKAIELKKKL-NATLIWVPR----EENKEADRLSRVAY 132 (149)
T ss_dssp HHTCCSCEEEESCHHHHHHHTTSSC--CCC-T-TH---HHHHHHHHHHHHHH-TCEEEECCG----GGCHHHHHHHHHHH
T ss_pred HcCCCEEEEEeChHHHHHHHhCccc--cCC-H-HH---HHHHHHHHHHHhcC-CEEEEEcCC----cccHHHHHHHHHHH
Confidence 2345789999999999999998641 222 1 11 25777777776543 699999999 49999999999998
Q ss_pred hc
Q psy1195 171 TS 172 (223)
Q Consensus 171 ~~ 172 (223)
..
T Consensus 133 ~~ 134 (149)
T 2ehg_A 133 EL 134 (149)
T ss_dssp HH
T ss_pred Hh
Confidence 76
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.07 E-value=2.7e-11 Score=98.28 Aligned_cols=117 Identities=11% Similarity=-0.146 Sum_probs=85.4
Q ss_pred ccCCCCccceeEEEecCccccccCCCCCCcccchhhhhhhhhhhhHHHHHHHhhhhhhhhchHHHHHHHHHHhhcCceEE
Q psy1195 19 LSGLPDSEWLALVLIDSPRYLDNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVT 98 (223)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 98 (223)
|+||||+++.|+||...+..+..+|..+..+++..|- ... -+..+.......+|.
T Consensus 20 ~~gNpG~~G~G~vl~~~g~~~~~~~~~~~~TNN~aEl-----------~A~--------------i~aL~~~~~~~~~v~ 74 (142)
T 1zbf_A 20 SQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEF-----------LAI--------------VHGLRYLKERNSRKP 74 (142)
T ss_dssp ECSSSEEEEEEEEETTTCCEEEECCCEEEECHHHHHH-----------HHH--------------HHHHHHHHHTTCCCC
T ss_pred cCCCCCCeEEEEEEEeCCEEEEEecccCCcCcHHHHH-----------HHH--------------HHHHHHHHhCCCeEE
Confidence 7899999999999997777777777765556666654 222 233333332211899
Q ss_pred EEecChhhHhhhccCCCCCCCCchhhcccChhHHHHHHHHHh--cCCceEEEEeccCCCCccChHHH
Q psy1195 99 TYSENRQKTVEICPEAVKIPPSAATILTKWPDDIQNFLILFL--SKLDVQFVWVPSHVGIAGNEEAD 163 (223)
Q Consensus 99 IfTDSqyaI~aI~~~~~~~~~Sgq~il~~~~~i~q~i~~ll~--~~~~V~~~WVPGHsGi~GNE~AD 163 (223)
|||||+||++-+.+.+ +++..++++.+ .++++.+.++.. +.+.++...|+.|++.-||..||
T Consensus 75 i~tDS~~vi~w~~~~~-~k~~~~~~v~n--~dLw~~l~~~~~w~~~~~~~~~~~kw~~~~~ge~pad 138 (142)
T 1zbf_A 75 IYSNSQTAIKWVKDKK-AKSTLVRNEET--ALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKAD 138 (142)
T ss_dssp EEESCHHHHHHHHHTC-CCCCCCCSTTT--HHHHHHHHHHHHHHHHCCCCCCEEECCHHHHCSCTTC
T ss_pred EEEehHHHHHHHHcCC-ccCCCCCCccc--HHHHHHHHHHHHHHhhCCCceeEEEeccCccCcCccc
Confidence 9999999999888754 23444566655 488888877654 66788888899999999999988
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=98.82 E-value=2.4e-09 Score=86.71 Aligned_cols=93 Identities=11% Similarity=-0.176 Sum_probs=67.5
Q ss_pred ccCCCCccceeEEEecCccccccCCCCCCcccchhhhhhhhhhhhHHHHHHHhhhhhhhhchHHHHHHHHHHhhcCceEE
Q psy1195 19 LSGLPDSEWLALVLIDSPRYLDNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVT 98 (223)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 98 (223)
|+|||||.+.|.|+++.+..+..+|.....+++..|- ... -+.++.......+|.
T Consensus 14 c~GNPGp~G~ggV~~~~g~~~~~~g~~~~tTNN~aEl-----------~A~--------------i~aL~~l~~~~~~v~ 68 (134)
T 4htu_A 14 SQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEF-----------LAI--------------VHGLRYLKERNSRKP 68 (134)
T ss_dssp EETTTEEEEEEEEETTTCCEEEEEEEEEEECHHHHHH-----------HHH--------------HHHHHHHHHTTCCCC
T ss_pred cCCCCCCeEEEEEEEECCEEEEEecCCCCCchHHHHH-----------HHH--------------HHHHHHHHhCCCCEE
Confidence 8999999999888898887777777765566666654 222 334444443334589
Q ss_pred EEecChhhHhhhccCCCCCCCCchhhcccChhHHHHHHHHH
Q psy1195 99 TYSENRQKTVEICPEAVKIPPSAATILTKWPDDIQNFLILF 139 (223)
Q Consensus 99 IfTDSqyaI~aI~~~~~~~~~Sgq~il~~~~~i~q~i~~ll 139 (223)
||||||||++-|.++. |+++.++++.+ .++++.+.++.
T Consensus 69 i~tDSqyVi~wi~~~~-~kt~~~~~vkN--~dLw~~ld~~~ 106 (134)
T 4htu_A 69 IYSNSQTAIKWVKDKK-AKSTLVRNEET--ALIWKLVDEAE 106 (134)
T ss_dssp EEESCHHHHHHHHHTC-CCCCCCCSSTT--HHHHHHHHHHH
T ss_pred EEcchHHHHHHHHcCC-cccCCCCCccC--HHHHHHHHHHH
Confidence 9999999999888754 45667788776 48888887554
No 17
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=95.24 E-value=0.0029 Score=55.39 Aligned_cols=9 Identities=22% Similarity=-0.086 Sum_probs=4.2
Q ss_pred ccccccCCC
Q psy1195 15 ERTYLSGLP 23 (223)
Q Consensus 15 ~~~~~~~~~ 23 (223)
....++||+
T Consensus 306 ~~L~l~~N~ 314 (386)
T 2ca6_A 306 LFLELNGNR 314 (386)
T ss_dssp CEEECTTSB
T ss_pred eEEEccCCc
Confidence 334455554
No 18
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F* 1p84_F* 2ibz_H* 1kyo_F*
Probab=71.91 E-value=0.79 Score=37.48 Aligned_cols=7 Identities=0% Similarity=0.007 Sum_probs=2.6
Q ss_pred cChhhHh
Q psy1195 102 ENRQKTV 108 (223)
Q Consensus 102 DSqyaI~ 108 (223)
|-+-.|+
T Consensus 75 DPk~~Lr 81 (146)
T 3cx5_F 75 DQLEDLR 81 (146)
T ss_dssp CHHHHHH
T ss_pred ChHHHHH
Confidence 3333333
Done!