RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1195
(223 letters)
>gnl|CDD|187700 cd09276, Rnase_HI_RT_non_LTR, non-LTR RNase HI domain of reverse
transcriptases. Ribonuclease H (RNase H) is classified
into two families, type 1 (prokaryotic RNase HI,
eukaryotic RNase H1 and viral RNase H) and type 2
(prokaryotic RNase HII and HIII, and eukaryotic RNase
H2). Ribonuclease HI (RNase HI) is an endonuclease that
cleaves the RNA strand of an RNA/DNA hybrid in a
sequence non-specific manner. RNase H is widely present
in various organisms, including bacteria, archaea and
eukaryotes. RNase HI has also been observed as an
adjunct domain to the reverse transcriptase gene in
retroviruses, long-term repeat (LTR)-bearing
retrotransposons and non-LTR retrotransposons. RNase HI
in LTR retrotransposons perform degradation of the
original RNA template, generation of a polypurine tract
(the primer for plus-strand DNA synthesis), and final
removal of RNA primers from newly synthesized minus and
plus strands. The catalytic residues for RNase H
enzymatic activity, three aspartatic acids and one
glutamatic acid residue (DEDD), are unvaried across all
RNase H domains. The position of the RNase domain of
non-LTR and LTR transposons is at the carboxyl terminal
of the reverse transcriptase (RT) domain and their RNase
domains group together, indicating a common evolutionary
origin. Many non-LTR transposons have lost the RNase
domain because their activity is at the nucleus and
cellular RNase may suffice; however LTR retotransposons
always encode their own RNase domain because it requires
RNase activity in RNA-protein particles in the
cytoplasm. RNase H inhibitors have been explored as an
anti-HIV drug target because RNase H inactivation
inhibits reverse transcription.
Length = 128
Score = 61.1 bits (149), Expect = 4e-12
Identities = 19/38 (50%), Positives = 22/38 (57%)
Query: 132 IQNFLILFLSKLDVQFVWVPSHVGIAGNEEADRLAKEA 169
+ L + V+ WVP H GI GNE ADRLAKEA
Sbjct: 89 RKAIRELANHGVKVRLHWVPGHSGIEGNERADRLAKEA 126
>gnl|CDD|215695 pfam00075, RNase_H, RNase H. RNase H digests the RNA strand of an
RNA/DNA hybrid. Important enzyme in retroviral
replication cycle, and often found as a domain
associated with reverse transcriptases. Structure is a
mixed alpha+beta fold with three a/b/a layers.
Length = 126
Score = 56.1 bits (136), Expect = 2e-10
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 124 ILTKWPD-----DIQNFLI-LFLSKLDVQFVWVPSHVGIAGNEEADRLAKEAL 170
I WP I+N + L K V WVP H GI GNE AD+LAK+
Sbjct: 73 ITNGWPTKSESKPIKNEIWELLQKKHKVYIQWVPGHSGIPGNELADKLAKQGA 125
>gnl|CDD|187704 cd09280, RNase_HI_eukaryote_like, Eukaryotic RNase H is longer and
more complex than their prokaryotic counterparts and
unlike prokaryote, RNase H are essential in higher
eukaryote. Ribonuclease H (RNase H) is classified into
two families, type 1 (prokaryotic RNase HI, eukaryotic
RNase H1 and viral RNase H) and type 2 (prokaryotic
RNase HII and HIII, and eukaryotic RNase H2). RNase H is
an endonuclease that cleaves the RNA strand of an
RNA/DNA hybrid in a sequence non-specific manner. RNase
H is involved in DNA replication, repair and
transcription. One of the important functions of RNase H
is to remove Okazaki fragments during DNA replication.
RNase H is widely present in various organisms,
including bacteria, archaea and eukaryote and most
prokaryotic and eukaryotic genomes contain multiple
RNase H genes. Despite the lack of amino acid sequence
homology, Type 1 and type 2 RNase H share a main-chain
fold and steric configurations of the four acidic
active-site (DEDD) residues and have the same catalytic
mechanism and functions in cells. Eukaryotic RNase H is
longer and more complex than in prokaryotes. Almost all
eukaryotic RNase HI have highly conserved regions at the
N-terminal called hybrid binding domain (HBD). It is
speculated that the HBD contributes to binding the
RNA/DNA hybrid. Prokaryotes and some single-cell
eukaryotes do not require RNase H for viability, but
RNase H is essential in higher eukaryotes. RNase H
knockout mice lack mitochondrial DNA replication and die
as embryos.
Length = 150
Score = 52.6 bits (127), Expect = 7e-09
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 138 LFLSKLDVQFVWVPSHVGIAGNEEADRLAKEAL 170
L + V+F VP H GI GNEEADRLAK+
Sbjct: 117 LEERGIRVKFWHVPGHSGIYGNEEADRLAKKGA 149
>gnl|CDD|187701 cd09277, RNase_HI_bacteria_HBD, Bacterial RNase HI containing a
hybrid binding domain (HBD) at the N-terminus.
Ribonuclease H (RNase H) enzymes are divided into two
major families, Type 1 and Type 2, based on amino acid
sequence similarities and biochemical properties. RNase
H is an endonuclease that cleaves the RNA strand of an
RNA/DNA hybrid in a sequence non-specific manner in the
presence of divalent cations. RNase H is involved in
DNA replication, repair and transcription. RNase H is
widely present in various organisms, including bacteria,
archaea and eukaryotes and most prokaryotic and
eukaryotic genomes contain multiple RNase H genes.
Despite the lack of amino acid sequence homology, Type 1
and type 2 RNase H share a main-chain fold and steric
configurations of the four acidic active-site (DEDD)
residues and have the same catalytic mechanism and
functions in cells. One of the important functions of
RNase H is to remove Okazaki fragments during DNA
replication. Prokaryotic RNase H varies greatly in
domain structures and substrate specificities.
Prokaryotes and some single-cell eukaryotes do not
require RNase H for viability. Some bacteria
distinguished from other bacterial RNase HI in the
presence of a hybrid binding domain (HBD) at the
N-terminus which is commonly present at the N-termini of
eukaryotic RNase HI. It has been reported that this
domain is required for dimerization and processivity of
RNase HI upon binding to RNA-DNA hybrids.
Length = 133
Score = 51.3 bits (124), Expect = 2e-08
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 133 QNFLILFLSKLDVQFVWVPSHVGIAGNEEADRLAKEAL 170
+ F+ K+ + FV V +H G NE AD+LAK+AL
Sbjct: 96 KEFMDKIKKKIKISFVKVKAHSGDKYNELADKLAKKAL 133
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 52.3 bits (125), Expect = 5e-08
Identities = 29/61 (47%), Positives = 37/61 (60%)
Query: 40 DNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTT 99
D G D G + + EEEEEE+++EEE E EEEEEEE++E EE E E R+K
Sbjct: 848 DEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPETRQKQAI 907
Query: 100 Y 100
Y
Sbjct: 908 Y 908
Score = 45.4 bits (107), Expect = 1e-05
Identities = 25/53 (47%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQK 106
+ + D EEE E EEEEEEE++EEEE E EEE E + E RQK
Sbjct: 853 DGGGGSDGGDSEEEE-EEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPETRQK 904
Score = 33.8 bits (77), Expect = 0.066
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
E +++E+ + + EEEE++EEEE E EEEEE
Sbjct: 844 EAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEE 882
Score = 31.1 bits (70), Expect = 0.56
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERR 95
E E E E E ++E +E EE EE +DE E E + E E
Sbjct: 716 EHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETE 758
Score = 30.7 bits (69), Expect = 0.73
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEICP 112
E + E+E E + E + + + E E E+ E E E E E+ ++ T E + E
Sbjct: 688 ERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEG 747
Query: 113 EA 114
EA
Sbjct: 748 EA 749
Score = 28.8 bits (64), Expect = 2.6
Identities = 19/65 (29%), Positives = 28/65 (43%)
Query: 45 DSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENR 104
++ + E E E ED+ E E E EE E+E + E E E E RK T +
Sbjct: 711 EAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGET 770
Query: 105 QKTVE 109
+ +
Sbjct: 771 EAEGK 775
Score = 28.8 bits (64), Expect = 2.9
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
EE E+E E + + + VE E + +E + E E E +E+E+
Sbjct: 739 EEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDED 779
Score = 28.4 bits (63), Expect = 3.7
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
E E + E + + E ER+ E+E E + E + + + E E
Sbjct: 671 GETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETE 711
Score = 27.3 bits (60), Expect = 9.3
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEICPE 113
E E+E E + K E E E E E+E E E +E K T +E + E E
Sbjct: 666 EAEQEGETETKGENESE-GEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAE 724
>gnl|CDD|187702 cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in
prokaryotes. Ribonuclease H (RNase H) is classified
into two evolutionarily unrelated families, type 1
(prokaryotic RNase HI, eukaryotic RNase H1 and viral
RNase H) and type 2 (prokaryotic RNase HII and HIII, and
eukaryotic RNase H2). RNase H is an endonuclease that
cleaves the RNA strand of an RNA/DNA hybrid in a
sequence non-specific manner. RNase H is involved in DNA
replication, repair and transcription. RNase H is widely
present in various organisms, including bacteria,
archaea and eukaryotes and most prokaryotic and
eukaryotic genomes contain multiple RNase H genes.
Despite the lack of amino acid sequence homology, Type 1
and type 2 RNase H share a main-chain fold and steric
configurations of the four acidic active-site (DEDD),
residues and have the same catalytic mechanism and
functions in cells. One of the important functions of
RNase H is to remove Okazaki fragments during DNA
replication. Prokaryotic RNase H varies greatly in
domain structures and substrate specificities.
Prokaryotes and some single-cell eukaryotes do not
require RNase H for viability.
Length = 139
Score = 46.0 bits (110), Expect = 1e-06
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 136 LILFLSKLDVQFVWVPSHVGIAGNEEADRLAKEA 169
L L+K V + WV H G GNE AD LA A
Sbjct: 104 LDALLAKHQVTWHWVKGHAGHPGNERADELANAA 137
>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein. This is a family of
fungal and plant proteins and contains many hypothetical
proteins. VID27 is a cytoplasmic protein that plays a
potential role in vacuolar protein degradation.
Length = 794
Score = 44.0 bits (104), Expect = 3e-05
Identities = 22/55 (40%), Positives = 33/55 (60%)
Query: 49 FTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSEN 103
F+ LE E+ E DD+EEE E EEEE+E++ +E + EE EE + Y ++
Sbjct: 376 FSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYEDS 430
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 41.2 bits (97), Expect = 2e-04
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 51 YLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTT---YSENRQKT 107
+ EEEEEEEE D + + E +E E ++++E E+ +REE +++K Y E +K
Sbjct: 43 FEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKELQREERLKKKKRVKTKAYKEPTKKK 102
Query: 108 VEICPEAVKIPPSAAT 123
+ P A K P +AA
Sbjct: 103 KKKDPTAAKSPKAAAP 118
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 41.2 bits (97), Expect = 2e-04
Identities = 19/44 (43%), Positives = 25/44 (56%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVT 98
E ++EE+D E E + RE E EEE DEEE ++ RRK
Sbjct: 383 EARKKEENDAEIEELRRELEGEEESDEEENEEPSKKNVGRRKFG 426
Score = 28.1 bits (63), Expect = 4.5
Identities = 14/53 (26%), Positives = 21/53 (39%)
Query: 65 EEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEICPEAVKI 117
E + E + E EE E E E +EEE + + + R+K E
Sbjct: 383 EARKKEENDAEIEELRRELEGEEESDEEENEEPSKKNVGRRKFGPENGEKEAE 435
Score = 26.9 bits (60), Expect = 9.3
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQK 106
EEEE E+EE+ K E+ + + E+ +EEE E +EE K T+ K
Sbjct: 455 EEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEENPWLKTTSSVGKSAK 508
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 41.1 bits (97), Expect = 3e-04
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 52 LEEEEEEEEEDDKEEER--VEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVE 109
+++E+EE+++DD EEE V+ +EEE+E+DE+ + + EEEEE K ++ + T
Sbjct: 330 VDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRS 389
Query: 110 ICPEAVKIPPS 120
P P S
Sbjct: 390 ELPFTFPCPKS 400
Score = 37.3 bits (87), Expect = 0.004
Identities = 11/41 (26%), Positives = 28/41 (68%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
+ ++E+EEDD ++ E E+ + +++E+EE + ++E++
Sbjct: 328 DGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDD 368
Score = 36.9 bits (86), Expect = 0.007
Identities = 14/39 (35%), Positives = 28/39 (71%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
+ EE++++EE+ V+ E+EE+++DD EEE + + +E
Sbjct: 316 LGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDE 354
Score = 36.5 bits (85), Expect = 0.010
Identities = 12/41 (29%), Positives = 29/41 (70%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
EE+ ++E+++ +++ +E EEE+ + DEEE+ + + ++E
Sbjct: 326 EEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDE 366
Score = 35.7 bits (83), Expect = 0.016
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 40 DNSGYDSGIFTYLEEEEEEEEEDDKE--EERVEREEEEEEEDDEEEERFEREEEEE 93
DN G G EEE+ ++ED+++ ++ E EE+ + D+EE+E E ++E+
Sbjct: 312 DNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDED 367
Score = 35.4 bits (82), Expect = 0.018
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 18 YLSGLPDSEWLALVLIDSPRYLDNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEE 77
+ D+ L D ++ D ++ EEEEE+ D +E + E+E+ +
Sbjct: 306 FEPDDDDNFGLGQGEEDEEE-EEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSD 364
Query: 78 EDDEEEERFEREEEEERRKVTTYSENRQKTVEI-CPE 113
++D+EEE E EE+E+++K + S + CP+
Sbjct: 365 DEDDEEE--EEEEKEKKKKKSAESTRSELPFTFPCPK 399
Score = 35.4 bits (82), Expect = 0.020
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Query: 54 EEEEEEEEDDK----EEERVEREEEEEEEDDEEEERFEREEEEE 93
EEE +EE ++ E ER+ R EEE+D+EEE+ E ++ +
Sbjct: 260 EEELAKEEAERLKKLEAERLRRMRGEEEDDEEEEDSKESADDLD 303
Score = 33.4 bits (77), Expect = 0.082
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 40 DNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTT 99
D D L + EE+EEE++ + + +EE++++D EEEE +EE +
Sbjct: 304 DEFEPDDDDNFGLGQGEEDEEEEEDGVD--DEDEEDDDDDLEEEEEDVDLSDEEEDEEDE 361
Query: 100 YSENRQKTVEICPEAVKIPPSAAT 123
S++ E E K +A
Sbjct: 362 DSDDEDDEEEEEEEKEKKKKKSAE 385
Score = 31.9 bits (73), Expect = 0.27
Identities = 11/49 (22%), Positives = 25/49 (51%)
Query: 45 DSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
D ++ + ++ EEE + ++E+EEDD+++ E E+ +
Sbjct: 303 DDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDL 351
Score = 31.5 bits (72), Expect = 0.36
Identities = 12/42 (28%), Positives = 28/42 (66%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
L++E E +++D+ + E +EEEEE+ ++E+ + +++ E
Sbjct: 302 LDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLE 343
Score = 30.0 bits (68), Expect = 1.3
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 53 EEEEEEEEEDDKEEERVER------EEEEEEEDDEEEERFEREEEEE 93
EEE+ +E DD ++E + EE+++EEE+ + E+EE+
Sbjct: 291 EEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEED 337
Score = 29.2 bits (66), Expect = 2.3
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
++ ++++ EDDEE+E EE+ ER+K
Sbjct: 136 DDFDDDDLGDLASDDRAAHFGGGEDDEEDE----EEQPERKK 173
Score = 27.3 bits (61), Expect = 7.9
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEE----ERFEREEEEE 93
EEE++EE++ +E + ++E E DD++ + E EEEEE
Sbjct: 283 RGEEEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEE 327
>gnl|CDD|223405 COG0328, RnhA, Ribonuclease HI [DNA replication, recombination, and
repair].
Length = 154
Score = 38.9 bits (91), Expect = 5e-04
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 127 KWPDDIQNFLILFLSKLDVQFVWVPSHVGIAGNEEADRLAKEALTSA 173
K D + L V + WV H G NE AD+LA+EA +A
Sbjct: 100 KNKDLWEELDELLKRHELVFWEWVKGHAGHPENERADQLAREAARAA 146
>gnl|CDD|217829 pfam03985, Paf1, Paf1. Members of this family are components of
the RNA polymerase II associated Paf1 complex. The Paf1
complex functions during the elongation phase of
transcription in conjunction with Spt4-Spt5 and
Spt16-Pob3i.
Length = 431
Score = 40.1 bits (94), Expect = 6e-04
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKT 107
+ EE +E+ED++EE+R + EEEE ED EEE RE+ S++ K
Sbjct: 366 DFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKA 420
Score = 38.2 bits (89), Expect = 0.002
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSE 102
E+EEEE+ D+ EEE E EEE + E+ + + E
Sbjct: 373 DEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKE 423
Score = 37.0 bits (86), Expect = 0.005
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQK 106
EE +E+E+E++++ EEE E+ ++E + E E V + SE++
Sbjct: 367 FEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKAD 421
Score = 35.1 bits (81), Expect = 0.021
Identities = 13/52 (25%), Positives = 22/52 (42%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENR 104
+E+EEEE+ D+ EE + EEE E+ E + + +
Sbjct: 373 DEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKES 424
Score = 35.1 bits (81), Expect = 0.023
Identities = 14/55 (25%), Positives = 24/55 (43%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKT 107
E+E+EEEE+ E E E E+ EEE E+ + + ++ +
Sbjct: 372 EDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESAS 426
Score = 30.9 bits (70), Expect = 0.46
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 59 EEEDDKEEERVEREEEEEEEDDEEEERFEREEEEER 94
+ D +E + E EEEE+ D+ EEE E EEE
Sbjct: 363 DPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGS 398
Score = 30.9 bits (70), Expect = 0.48
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSE 102
+E EEEE +D EEE + E+ E + + ++ + SE
Sbjct: 382 SDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSDSE 431
Score = 30.5 bits (69), Expect = 0.66
Identities = 15/60 (25%), Positives = 26/60 (43%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEICPEA 114
+E + D + + EE +ED++EEE +E EE + E Q + E+
Sbjct: 349 TKESKMRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSES 408
Score = 30.1 bits (68), Expect = 0.81
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 49 FTYLEEEEEEEEEDDKEEERVE---REEEEEEEDDEEEERFEREEEEE 93
+E + DK R++ EE +E+ED+EEE+R + EEEE
Sbjct: 342 VKLRNPSTKESKMRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEE 389
Score = 29.7 bits (67), Expect = 1.2
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 51 YLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERR 95
+ + ++ +E+ E EE+ +E +EEE EE + R
Sbjct: 357 KRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSR 401
Score = 29.3 bits (66), Expect = 1.8
Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSEN 103
+E EEEE + EE + E+ + + E + ++ + S++
Sbjct: 380 QRSDEHEEEEGEDSEE-EGSQSREDGSSESSSDVGSDSESKADKESASDSDS 430
Score = 27.0 bits (60), Expect = 8.4
Identities = 10/44 (22%), Positives = 16/44 (36%)
Query: 51 YLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEER 94
EE E+ EEE + E E + D E + + +
Sbjct: 386 EEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSD 429
>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230;
Provisional.
Length = 2849
Score = 40.4 bits (94), Expect = 6e-04
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 37 RYLDNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEE----DDEEEE 84
R+L +++++E+E+EDD +EE E EEEEEEE DDE+EE
Sbjct: 138 RHLAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEE 189
Score = 37.3 bits (86), Expect = 0.005
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 6/59 (10%)
Query: 40 DNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEE------EEEDDEEEERFEREEEE 92
D S D+ + +E+E+E+++D++++E E EEEE E+E+DE E F E+ E
Sbjct: 144 DMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKSE 202
Score = 35.0 bits (80), Expect = 0.026
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 57 EEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
EE+ ++ ++ ++E+E+EDD++EE E EEEEE
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEE 177
Score = 34.6 bits (79), Expect = 0.041
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
EE+ D + E+E+E++DDEE++ E EEEEE
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEE 179
Score = 34.3 bits (78), Expect = 0.058
Identities = 12/49 (24%), Positives = 30/49 (61%)
Query: 58 EEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQK 106
EE+ + V +++E+E++D+++E + EEEEE ++ + + ++
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEE 189
Score = 32.7 bits (74), Expect = 0.17
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEE 92
EE+ D+ + + +E+E+++D+E++E E EEEE
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEE 179
Score = 32.3 bits (73), Expect = 0.19
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 56 EEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
EE+ + +E+E+E+DD+EE+ E EEEEE K
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIK 181
Score = 31.2 bits (70), Expect = 0.48
Identities = 12/41 (29%), Positives = 27/41 (65%)
Query: 51 YLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEE 91
+L EE+ ++ ++ E E+E++++++++EE E EEE
Sbjct: 139 HLAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEE 179
Score = 30.0 bits (67), Expect = 1.2
Identities = 14/41 (34%), Positives = 31/41 (75%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
++EE++EEE+++EEE ++E+EE++ E+ +E+ E ++
Sbjct: 165 DDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKSEVDK 205
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 39.9 bits (93), Expect = 6e-04
Identities = 39/145 (26%), Positives = 60/145 (41%), Gaps = 2/145 (1%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEICP 112
EE EEEEE+++EEE E+E EEEE +DEEEE + ++ SE E
Sbjct: 442 EESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEE 501
Query: 113 EAVKIPPSAATILTKWPDDIQNFLILFLSKLDVQFVWVPSHVGIAGNEEADR--LAKEAL 170
+A + A I + + + S + EE+D LA+E+
Sbjct: 502 DAERRNSEMAGISRMSEGQQPRGSSVQPESPQEEPLQPESMDAESVGEESDEELLAEESP 561
Query: 171 TSAHPSVNQIPIPNYKTYSKKKILA 195
S+H + + P S + L
Sbjct: 562 LSSHTELEGVATPVETKISSSRKLP 586
Score = 39.9 bits (93), Expect = 7e-04
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 24 DSEWLALVLIDSPRYLDNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEE 83
D + +SP + +S +EEEEEEEEE+++EE+ E EE E+EE++EE
Sbjct: 420 DPSKASSTSGESPSM---ASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEV 476
Query: 84 ERFEREEEEE 93
E EEE
Sbjct: 477 EADNGSEEEM 486
Score = 33.7 bits (77), Expect = 0.071
Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 4/52 (7%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQ 105
+E EEEE ++EEE EEEEEEE+++E E E E+EEE +V + + +
Sbjct: 437 QESEEEESVEEEEE----EEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEE 484
Score = 32.6 bits (74), Expect = 0.18
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEE--------DDEEEERFEREEEEERRKVTTYSEN 103
EEEE E+E+++EE + EEE E +E EE ER E
Sbjct: 461 ESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMAGISRMSEGQ 520
Query: 104 RQKTVEICPEAVKIPPSA 121
+ + + PE+ + P
Sbjct: 521 QPRGSSVQPESPQEEPLQ 538
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein. CDC45 is an essential gene
required for initiation of DNA replication in S.
cerevisiae, forming a complex with MCM5/CDC46.
Homologues of CDC45 have been identified in human, mouse
and smut fungus among others.
Length = 583
Score = 39.6 bits (93), Expect = 7e-04
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 33 IDS--PRYLDNSGYDSGIFTYLEEEEEEE-----EEDDKEEERVEREEEEEEEDDEEEER 85
IDS P LDN + + + + EEE DD + E ++++EE D+E+EE
Sbjct: 81 IDSHRPWNLDNVFGSDQVVIFDDGDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEES 140
Query: 86 FEREEEEE 93
+ E++E+
Sbjct: 141 SKSEDDED 148
Score = 39.6 bits (93), Expect = 8e-04
Identities = 14/50 (28%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 48 IFTYLEEEEEEEEEDDKEEERVE-REEEEEEEDDEEEERFEREEEEERRK 96
+ LEE+++++EE D+E+E E++E+++DD++++ E R+
Sbjct: 119 AYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERR 168
Score = 37.3 bits (87), Expect = 0.005
Identities = 12/45 (26%), Positives = 31/45 (68%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
+++++EE +++ EE ++E++++DD++++ RE ERR+
Sbjct: 125 EDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRR 169
Score = 35.0 bits (81), Expect = 0.023
Identities = 13/44 (29%), Positives = 30/44 (68%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
+++EE +EED++ + + E++++++DD++ ER E RR+
Sbjct: 128 DDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRRRR 171
Score = 34.6 bits (80), Expect = 0.039
Identities = 10/45 (22%), Positives = 27/45 (60%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
++EE +EE+++ + + +++++++DD+ R E RR+
Sbjct: 128 DDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRRRRR 172
Score = 34.6 bits (80), Expect = 0.039
Identities = 14/53 (26%), Positives = 33/53 (62%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQ 105
++++EE +E+D+E + E +E+++++DD+++ E RR+ + E R
Sbjct: 127 DDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRRRRREWEEKRA 179
Score = 31.1 bits (71), Expect = 0.52
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKV--------TTYSE 102
E+EE + EDD++++ + +++ + E R R E EE+R T Y
Sbjct: 136 EDEESSKSEDDEDDDDDDDDDDIATRERSLERRRRRREWEEKRAELEFYYYQGTYYGT 193
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 39.3 bits (92), Expect = 8e-04
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 45 DSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENR 104
+S + E+EEE+D+ ++ E +EE E+DEEE E E E E+ K + + R
Sbjct: 122 ESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEKASELATTR 181
Score = 36.9 bits (86), Expect = 0.005
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKV 97
E EE+E+ +D+ E VE ++E E D E+EE + ++ +
Sbjct: 105 EVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDS 149
Score = 34.2 bits (79), Expect = 0.040
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
E+ E ++DD EEE E EE+E+ +D+ E E ++E E
Sbjct: 88 AEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIE 128
Score = 31.9 bits (73), Expect = 0.20
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEER 94
E E+ E +DD +EE EE+E+ DDE E ++E
Sbjct: 87 EAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIE 128
Score = 31.2 bits (71), Expect = 0.35
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
LE+ +EEE + + E+ E +++DDEEEE E+E+
Sbjct: 75 LEKWKEEERKKKEAEQ----GLESDDDDDEEEEWEVEEDEDS 112
Score = 27.7 bits (62), Expect = 5.3
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 51 YLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEE 84
+ EEE +++E + E + +EEEE E +E+E+
Sbjct: 78 WKEEERKKKEAEQGLESDDDDDEEEEWEVEEDED 111
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 39.1 bits (92), Expect = 0.001
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSEN-RQKT 107
EEE++E++ + + EEEEEE++ +EEE+ E EEE E K + +Q T
Sbjct: 422 KREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKKQAT 478
Score = 37.6 bits (88), Expect = 0.004
Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 38 YLDNSGYDSGIF--TYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERR 95
+L S + + E++ EEE +++++ +++EEE++EE+E+ E E+EEE
Sbjct: 401 FLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEE 460
Query: 96 KV 97
+
Sbjct: 461 EA 462
Score = 34.9 bits (81), Expect = 0.026
Identities = 19/54 (35%), Positives = 37/54 (68%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQK 106
E++ EEE+++ K++ +++EEEEE+++E++ E+EEEEE + E +K
Sbjct: 420 EKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKK 473
Score = 29.1 bits (66), Expect = 2.2
Identities = 15/70 (21%), Positives = 36/70 (51%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEICPE 113
++ ++ + E++R E ++E++++ +++ E EEEE+ +K E ++ E E
Sbjct: 409 TKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEE 468
Query: 114 AVKIPPSAAT 123
+ AT
Sbjct: 469 EEEKKKKQAT 478
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 39.4 bits (92), Expect = 0.001
Identities = 22/52 (42%), Positives = 37/52 (71%)
Query: 48 IFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTT 99
I+ ++E+E E+E D++EEE E ++EEEE+ ++EE + EEE+E +K T
Sbjct: 23 IYLWVEKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKT 74
Score = 28.6 bits (64), Expect = 2.9
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEE 83
E+EE EEE+++ E E E EE+ E+ EE
Sbjct: 497 EDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 28.6 bits (64), Expect = 3.2
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEE 84
++E+EE EEED++ E EE+ ED + EE
Sbjct: 495 IDEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 37.7 bits (88), Expect = 0.001
Identities = 16/46 (34%), Positives = 31/46 (67%)
Query: 51 YLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
L +++E+EE+++EE VE +EEE+ D+ E+ + + E+RR+
Sbjct: 93 LLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRE 138
Score = 33.4 bits (77), Expect = 0.039
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERR 95
EEE E EE D++E+ E+E + E+ ER+++E +
Sbjct: 106 EEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILK 148
Score = 30.7 bits (70), Expect = 0.36
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
EEEEEE E ++ +EE E+ +E E++ + +R +R E E ++K
Sbjct: 103 EEEEEEVEVEELDEE--EQIDELLEKELAKLKREKRRENERKQK 144
Score = 28.8 bits (65), Expect = 1.4
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVT 98
E EE +EE+ +E + + + E E ER ++E +E+ K+
Sbjct: 109 VEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKEQMKML 154
Score = 28.0 bits (63), Expect = 2.5
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFER 88
L+EEE+ +E +KE +++RE+ E E ++E E+
Sbjct: 114 LDEEEQIDELLEKELAKLKREKRRENERKQKEILKEQ 150
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits
in yeasts and in human cells. Twelve of these are akin
to RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
Rpc34 and Rpc82 form a cluster of enzyme-specific
subunits that contribute to transcription initiation in
S.cerevisiae and H.sapiens. There is evidence that these
subunits are anchored at or near the N-terminal Zn-fold
of Rpc1, itself prolonged by a highly conserved but RNA
polymerase III-specific domain.
Length = 221
Score = 38.2 bits (89), Expect = 0.001
Identities = 16/42 (38%), Positives = 32/42 (76%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
LE++ +E E +D +EE + EEEEEEE++E+E+ + +++++
Sbjct: 156 LEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDD 197
Score = 36.7 bits (85), Expect = 0.005
Identities = 15/48 (31%), Positives = 30/48 (62%)
Query: 45 DSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEE 92
D + ++ +E E ED EE+ + EEEEEEE+++E+ + ++++
Sbjct: 150 DEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDD 197
Score = 34.7 bits (80), Expect = 0.021
Identities = 17/47 (36%), Positives = 31/47 (65%)
Query: 47 GIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
G+FT EE+ +E+ +++ + E+ +EED+++EE E EEEE+
Sbjct: 140 GLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEED 186
Score = 30.5 bits (69), Expect = 0.51
Identities = 11/28 (39%), Positives = 25/28 (89%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDD 80
E+E++EEEE+++EEE + +++++++DD
Sbjct: 171 EDEKDEEEEEEEEEEDEDFDDDDDDDDD 198
Score = 29.7 bits (67), Expect = 0.94
Identities = 10/28 (35%), Positives = 24/28 (85%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDD 80
+E++EEEEE+++EE+ +++++++DD
Sbjct: 172 DEKDEEEEEEEEEEDEDFDDDDDDDDDD 199
Score = 29.0 bits (65), Expect = 1.7
Identities = 13/39 (33%), Positives = 29/39 (74%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEE 91
E++EEEEEE+++E+E + +++++++D E F+ E+
Sbjct: 173 EKDEEEEEEEEEEDEDFDDDDDDDDDDYNAENYFDNGED 211
>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional.
Length = 449
Score = 38.6 bits (90), Expect = 0.002
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERR 95
LE E+ E E+D + E+E ED++E E + EEEEE R
Sbjct: 406 LEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEAR 449
Score = 35.9 bits (83), Expect = 0.012
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVT 98
EE E E+ + EE+ RE ED+ E+E E + E +
Sbjct: 403 EERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEA 448
Score = 34.8 bits (80), Expect = 0.029
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
E + EEE+ + E ER E E+ E EE+ R
Sbjct: 387 ELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLP 427
Score = 34.4 bits (79), Expect = 0.036
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 34 DSPRYLDNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
DS Y D D+ + + + EEEE + EER+E E+ E E+D E+E
Sbjct: 372 DSAEY-DQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDE 430
Query: 94 R 94
Sbjct: 431 F 431
Score = 34.4 bits (79), Expect = 0.039
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 53 EEEEEEEEEDDKEEERVEREEEE-EEEDDEEEERFEREEEEE 93
EE + E E+ E E+ ER EE+ + E E+E+E
Sbjct: 395 EEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDE 436
Score = 32.4 bits (74), Expect = 0.17
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
Query: 52 LEEEEEEE---------EEDDKEEERVEREEEEEEEDDEEEERFEREEEEER 94
L+ E EE EED + E E+E E++DE EE EEEE R
Sbjct: 398 LQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEAR 449
Score = 32.1 bits (73), Expect = 0.22
Identities = 13/55 (23%), Positives = 21/55 (38%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKT 107
EEE + E +++ E EE+ E E E E+E E ++
Sbjct: 394 EEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEA 448
Score = 27.1 bits (60), Expect = 8.9
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERR 95
E ++E ED K E + EEEE + E E E+ R
Sbjct: 374 AEYDQEAEDAKVAE--LISQREEEEALQREAEERLEAEQAER 413
>gnl|CDD|237047 PRK12298, obgE, GTPase CgtA; Reviewed.
Length = 390
Score = 38.3 bits (90), Expect = 0.002
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 48 IFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
+ T++EE EE E+ + E+VE ++ + EE E +++ +
Sbjct: 328 LMTFIEENPREEAEEAEAPEKVEFMWDDYHREQLEEVEEEDDDDWD 373
Score = 29.5 bits (67), Expect = 1.4
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 53 EEEEEEEEE-----DDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
EE E E+ DD E++E EEE+++D +++ + +E E
Sbjct: 340 AEEAEAPEKVEFMWDDYHREQLEEVEEEDDDDWDDDWDEDDDEGVE 385
>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2
subunit 1; Provisional.
Length = 319
Score = 37.7 bits (88), Expect = 0.003
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 5/43 (11%)
Query: 51 YLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
LE+ EEEEEEDD E E+E+EED++EEE + +E ++
Sbjct: 282 LLEKAEEEEEEDDYSES-----EDEDEEDEDEEEEEDDDEGDK 319
Score = 36.6 bits (85), Expect = 0.007
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
+EE+ EE + EEE E + E E++DEE+E E EE+++
Sbjct: 275 DEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDD 315
Score = 36.2 bits (84), Expect = 0.008
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 43 GYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFERE 89
G D L E+ EEEEE+D E + +EE+E+E++EE++ +
Sbjct: 273 GGDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 33.5 bits (77), Expect = 0.071
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
+EE+ E+ E+ E EE++ E ++E+E E EEEEE
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEE 312
Score = 33.5 bits (77), Expect = 0.075
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
+EE+ EE +K EE E ++ E ED++EE+ E EEE++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDD 314
Score = 32.3 bits (74), Expect = 0.17
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 60 EEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQ 105
+++ EE +E+ EEEEEEDD E E EE+E+ + E +
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 30.0 bits (68), Expect = 0.82
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 59 EEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKV 97
+E+D EE + EEEEEE+D E E + E+E+E +
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEE 312
>gnl|CDD|217861 pfam04050, Upf2, Up-frameshift suppressor 2. Transcripts
harbouring premature signals for translation
termination are recognised and rapidly degraded by
eukaryotic cells through a pathway known as
nonsense-mediated mRNA decay. In Saccharomyces
cerevisiae, three trans-acting factors (Upf1 to Upf3)
are required for nonsense-mediated mRNA decay.
Length = 171
Score = 36.6 bits (85), Expect = 0.004
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEER 94
L EE+E++E D+EE + +E++EE D EEE+ F +EEE
Sbjct: 16 LPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEV 58
Score = 35.0 bits (81), Expect = 0.012
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Query: 42 SGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYS 101
SG +S E+EE EE++D E EEE + DDE++E + EEE+
Sbjct: 1 SGSESESDDGEEDEELPEEDEDDESSD---EEEVDLPDDEQDEESDSEEEQI-------- 49
Query: 102 ENRQKTVEICPEA 114
++ E+ PEA
Sbjct: 50 FVTRQEEEVDPEA 62
Score = 32.3 bits (74), Expect = 0.11
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEE 92
+EEE + DD+++E + EEE+ +EEE E E
Sbjct: 26 SDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDPEAEAE 65
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 37.2 bits (86), Expect = 0.004
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQ 105
L+E EE E+EDD + + +EE+E+ + EE ++ RE R +N Q
Sbjct: 83 LDELEELEKEDDDLDGELVELQEEKEQLENEELQYLREYNLFDRNNLQLEDNLQ 136
Score = 29.1 bits (65), Expect = 1.8
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 52 LEEEEEEEEEDDKEEERVEREE----EEEEEDDEEEERFEREEEEERRKVTTYSEN 103
L+E ++EEE E E +E+E+ E E EE+E+ E EE + R+ + N
Sbjct: 72 LDELKKEEERLLDELEELEKEDDDLDGELVELQEEKEQLENEELQYLREYNLFDRN 127
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 37.5 bits (88), Expect = 0.004
Identities = 10/44 (22%), Positives = 21/44 (47%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
+ EE+ E ++E+EEE+++E + +E E +
Sbjct: 175 DPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPE 218
Score = 37.1 bits (87), Expect = 0.006
Identities = 10/49 (20%), Positives = 21/49 (42%)
Query: 48 IFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
+ + EE+ E E +++E+EE++E+E +E
Sbjct: 169 LIDGFVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELP 217
Score = 36.3 bits (85), Expect = 0.011
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKV 97
EE+ E E ++ +E+EEEE+DE ++ +E E KV
Sbjct: 176 PNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEKV 220
Score = 30.1 bits (69), Expect = 0.92
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEE 92
EE + +D E + +E+ ++E E E
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESE 98
Score = 27.5 bits (62), Expect = 7.4
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 56 EEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
EE + DD E + + +E+ +EE E E
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESE 98
>gnl|CDD|187690 cd06222, RNase_H, RNase H is an endonuclease that cleaves the RNA
strand of an RNA/DNA hybrid in a sequence non-specific
manner. Ribonuclease H (RNase H) enzymes are divided
into two major families, Type 1 and Type 2, based on
amino acid sequence similarities and biochemical
properties. RNase H is an endonuclease that cleaves the
RNA strand of an RNA/DNA hybrid in a sequence
non-specific manner in the presence of divalent cations.
RNase H is widely present in various organisms,
including bacteria, archaea and eukaryotes. Most
prokaryotic and eukaryotic genomes contain multiple
RNase H genes. Despite the lack of amino acid sequence
homology, Type 1 and type 2 RNase H share a main-chain
fold and steric configurations of the four acidic
active-site residues and have the same catalytic
mechanism and functions in cells. RNase H is involved in
DNA replication, repair and transcription. One of the
important functions of RNase H is to remove Okazaki
fragments during DNA replication. RNase H inhibitors
have been explored as an anti-HIV drug target because
RNase H inactivation inhibits reverse transcription.
Length = 123
Score = 35.4 bits (82), Expect = 0.005
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 127 KWPDDIQNFLILFLSKLDVQFVWVPSHVGIAGNEEADRLAKEAL 170
K + + L+L +D++F VP GNE ADRLAKEA
Sbjct: 84 KNNLLLWDILLLLSKFIDIRFEHVPRE----GNEVADRLAKEAA 123
>gnl|CDD|178927 PRK00203, rnhA, ribonuclease H; Reviewed.
Length = 150
Score = 35.6 bits (83), Expect = 0.006
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 144 DVQFVWVPSHVGIAGNEEADRLAKEALTSA 173
+++ WV H G NE D LA+ A
Sbjct: 114 QIKWHWVKGHAGHPENERCDELARAGAEEA 143
>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein. This
protein is covalently attached to the terminii of
replicating DNA in vivo.
Length = 548
Score = 36.5 bits (85), Expect = 0.007
Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFERE 89
E EE+++EEE V EEEEEE++EEE FE E
Sbjct: 300 PSPPEPEEEEEEEEEVP--EEEEEEEEEEERTFEEE 333
Score = 34.6 bits (80), Expect = 0.035
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKV 97
E E+++EEE EE EEE++EEEE EEE R V
Sbjct: 300 PSPPEPEEEEEEE----EEVPEEEEEEEEEEERTFEEEVRATV 338
Score = 33.5 bits (77), Expect = 0.080
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEE 84
E EEEEE+++E E EEEEEEE EEE
Sbjct: 302 PPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 29.2 bits (66), Expect = 1.8
Identities = 18/39 (46%), Positives = 21/39 (53%)
Query: 72 EEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEI 110
E EEEE++EEE E EEEEE + T E R E
Sbjct: 303 PEPEEEEEEEEEVPEEEEEEEEEEERTFEEEVRATVAEA 341
Score = 28.1 bits (63), Expect = 4.4
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 68 RVEREEEEEEEDDEEEERFEREEEEERRKVTTYSE 102
E EEE++EEEE E EEEEE + T+ E
Sbjct: 298 PPPSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEE 332
Score = 27.3 bits (61), Expect = 6.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 50 TYLEEEEEEEEEDDKEEERVEREEEE 75
EEEE EEE+++EEE EEE
Sbjct: 308 EEEEEEEVPEEEEEEEEEEERTFEEE 333
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 35.5 bits (82), Expect = 0.008
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 48 IFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFERE-----EEEERRKVTTYSE 102
IF L ++EEEE ++E +E+ E E +E+ +RE E+E+ K
Sbjct: 87 IFRELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKP 146
Query: 103 NRQK 106
K
Sbjct: 147 KPSK 150
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin. Nucleoplasmins are also
known as chromatin decondensation proteins. They bind to
core histones and transfer DNA to them in a reaction
that requires ATP. This is thought to play a role in the
assembly of regular nucleosomal arrays.
Length = 146
Score = 35.4 bits (82), Expect = 0.008
Identities = 15/36 (41%), Positives = 27/36 (75%), Gaps = 2/36 (5%)
Query: 49 FTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEE 84
EE+E +++E+D+EEE + EE+++E++ EEEE
Sbjct: 106 LVASEEDESDDDEEDEEEE--DDEEDDDEDESEEEE 139
Score = 34.2 bits (79), Expect = 0.021
Identities = 20/39 (51%), Positives = 28/39 (71%), Gaps = 8/39 (20%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
EE+E +DD+E+E EEE++EEDD+E+E EEEE
Sbjct: 109 SEEDESDDDEEDE----EEEDDEEDDDEDE----SEEEE 139
Score = 32.3 bits (74), Expect = 0.084
Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Query: 42 SGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEE 83
SG E +++EE+E+++++E E+++E+E +EEE
Sbjct: 102 SGQHLVASEEDESDDDEEDEEEEDDE----EDDDEDESEEEE 139
Score = 26.1 bits (58), Expect = 9.6
Identities = 7/29 (24%), Positives = 19/29 (65%)
Query: 65 EEERVEREEEEEEEDDEEEERFEREEEEE 93
+ E+E ++++++EEE + E+++E
Sbjct: 104 QHLVASEEDESDDDEEDEEEEDDEEDDDE 132
>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein. This
family includes the radial spoke head proteins RSP4 and
RSP6 from Chlamydomonas reinhardtii, and several
eukaryotic homologues, including mammalian RSHL1, the
protein product of a familial ciliary dyskinesia
candidate gene.
Length = 481
Score = 36.2 bits (84), Expect = 0.010
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 50 TYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERF 86
E+++EEEE + EEE E EE EE E +E
Sbjct: 341 WVNPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPPLL 377
Score = 35.0 bits (81), Expect = 0.025
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 50 TYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEE 83
T++ E+++EEE+ ++EE E EEE EE + EE
Sbjct: 340 TWVNPEQKDEEEEQEDEEEEEEEEEPEEPEPEEG 373
Score = 33.1 bits (76), Expect = 0.11
Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYS 101
E E E EE+++EEE E +EE+E E++EEEE E +EEE V Y
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEEGTGVNKYV 212
Score = 32.3 bits (74), Expect = 0.17
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 65 EEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSE 102
E++ E E+E+EEE++EEEE E E EE +T SE
Sbjct: 345 EQKDEEEEQEDEEEEEEEEEPEEPEPEEGPPLLTPISE 382
Score = 31.2 bits (71), Expect = 0.47
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 65 EEERVEREEEEEEEDDEEEERFEREEEEE 93
E+ + EEE+E+E++EEEE E E E
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPE 371
Score = 30.8 bits (70), Expect = 0.54
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 50 TYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEE 84
Y EEEEEEEE+++ ER E EE + E E E
Sbjct: 284 LYQLEEEEEEEEEEEPAERDELEENPDFEGLEVRE 318
Score = 29.6 bits (67), Expect = 1.4
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 32/80 (40%)
Query: 47 GIFTYLEEEEEEEEEDDKEEERVEREEEEE------------------------------ 76
G++ EEEEEEEEE+ E + +E + E
Sbjct: 283 GLYQLEEEEEEEEEEEPAERDELEENPDFEGLEVRELADSLDNWVHHVQHILPQGRCTWV 342
Query: 77 --EEDDEEEERFEREEEEER 94
E+ DEEEE+ + EEEEE
Sbjct: 343 NPEQKDEEEEQEDEEEEEEE 362
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi. This family includes
the fifth essential DNA polymerase in yeast EC:2.7.7.7.
Pol5p is localised exclusively to the nucleolus and
binds near or at the enhancer region of rRNA-encoding
DNA repeating units.
Length = 784
Score = 36.0 bits (83), Expect = 0.011
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
E EEE+EDD EE + +E E ED E E + E+ EE +
Sbjct: 646 EGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQ 687
Score = 36.0 bits (83), Expect = 0.011
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 46 SGIFTYLEEEEE---EEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
+F EE+E+ E ++D+ E E +E E E E D E+ E E+E++ E
Sbjct: 642 QQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAE 692
Score = 33.7 bits (77), Expect = 0.076
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKV 97
E E E+ E + E + + EE+E+E+D E E ++ RR +
Sbjct: 664 ECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKAVRRAL 708
Score = 29.5 bits (66), Expect = 1.7
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 45 DSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEE 84
D +++E+E E + E E + E+ EED++E++
Sbjct: 651 DEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDD 690
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 35.5 bits (82), Expect = 0.012
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQ 105
E E +EE++ +E+ E E+EE +D EE + EE + EN++
Sbjct: 19 KENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKK 72
Score = 34.3 bits (79), Expect = 0.027
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
EE+ +E ++KEE++ + E+ E EE ++EE + EE E
Sbjct: 14 EEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNE 53
Score = 33.2 bits (76), Expect = 0.063
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
EE+ +E++ +EE +EE+ E E+ E+EE E EE
Sbjct: 12 NMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESN 52
Score = 32.4 bits (74), Expect = 0.13
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVE 109
E+E ++ + + EE +E E +EED +EE E EE E+ + E+ + +E
Sbjct: 1 MEKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIE 57
Score = 29.0 bits (65), Expect = 1.7
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 56 EEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEICPEAV 115
E+E +D K E +E + +E E+ EE++ E + E E + E+ +++ E+ E +
Sbjct: 1 MEKECKDAKHEN-MEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEEL 59
Query: 116 K 116
K
Sbjct: 60 K 60
Score = 27.8 bits (62), Expect = 3.9
Identities = 11/50 (22%), Positives = 25/50 (50%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSE 102
+ E EE E+++ E+ E E + EE +E + + E ++ ++ +
Sbjct: 33 DLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKKLENELEALKD 82
Score = 27.0 bits (60), Expect = 6.3
Identities = 14/59 (23%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEE--DDEEEERFEREEEEERRKVTTYSENRQKTVE 109
E+E ++ + ++ EE+ + E +EE+ +E+ E E E+EE +E + + ++
Sbjct: 2 EKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELK 60
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK
motif.
Length = 189
Score = 35.1 bits (81), Expect = 0.014
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
E EE ++ E+ +E ER E EE EEE + ++EE +E EE+ RK
Sbjct: 27 EREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARK 70
Score = 32.7 bits (75), Expect = 0.090
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEE 92
LEE+ E E ++++E E +++EEEE E EE+ +E+EE
Sbjct: 34 LEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEE 74
Score = 32.4 bits (74), Expect = 0.097
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
EE+ E E ++EE ERE+++EEE+ +E E R+E+EE
Sbjct: 35 EEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEE 74
Score = 31.2 bits (71), Expect = 0.30
Identities = 19/41 (46%), Positives = 31/41 (75%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
+ E E +EE++ EEER +++EEEE ++ EE+ R E+EE E+
Sbjct: 37 KREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEK 77
Score = 28.9 bits (65), Expect = 1.7
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 51 YLEEEEEEEEEDDKEEERVEREEEEEEEDDEEE 83
EEEE EEE + K+EE +E EE+ ++EE
Sbjct: 42 RKEEEELEEEREKKKEEEERKEREEQARKEQEE 74
Score = 27.7 bits (62), Expect = 3.6
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERR 95
EE++ +E E EREE ++ E+ E ER E EE EE R
Sbjct: 11 LEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEER 52
Score = 27.0 bits (60), Expect = 6.6
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQK 106
E++ ++ + +EEER ER++ EE+ + E +E E EEE E++K + R++
Sbjct: 13 EKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREE 66
>gnl|CDD|227504 COG5177, COG5177, Uncharacterized conserved protein [Function
unknown].
Length = 769
Score = 35.8 bits (82), Expect = 0.015
Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 12/86 (13%)
Query: 51 YLEEEEEEEEEDDKEEERVEREEE------------EEEEDDEEEERFEREEEEERRKVT 98
+EEEE+ + +D+E +++ +EE ++ E FE EE +
Sbjct: 393 AEDEEEEDGQCNDEESTMSAIDDDDPKENDNEEVAGDEESAIDDNEGFEELSPEEEERQL 452
Query: 99 TYSENRQKTVEICPEAVKIPPSAATI 124
+ +K P+ ++ PS + I
Sbjct: 453 REFRDMEKEDREFPDEAELQPSESAI 478
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region. The domain
is found in the primary vegetative sigma factor. The
function of this domain is unclear and can be removed
without loss of function.
Length = 211
Score = 34.9 bits (81), Expect = 0.015
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK---VTTYSENRQKTVE 109
E E D+++ E + ++E+E+EDDEEE + EE R + + E +K +E
Sbjct: 40 TAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEEARERFAELREQYEKTRKAIE 99
Score = 32.9 bits (76), Expect = 0.076
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEE 84
E E D+E+ + +++E+E++D+EEE
Sbjct: 39 ATAAAIESELDEEDLEDDDDDDEDEDEDDEEE 70
Score = 32.5 bits (75), Expect = 0.10
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEE--ERFER 88
L+EE+ E+++DD E+E + EEE + D EE ERF
Sbjct: 48 LDEEDLEDDDDDDEDEDEDDEEEADLGPDPEEARERFAE 86
Score = 32.2 bits (74), Expect = 0.16
Identities = 8/32 (25%), Positives = 19/32 (59%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEE 84
E + EE+ + ++++E+ED+++EE
Sbjct: 38 AATAAAIESELDEEDLEDDDDDDEDEDEDDEE 69
Score = 31.4 bits (72), Expect = 0.26
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 51 YLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
+++ E EE+ E++DD++E+ E +EEE
Sbjct: 29 FIDPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEA 71
Score = 29.5 bits (67), Expect = 1.0
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
E ++ E+ E+++DD+E+E + EEE +
Sbjct: 33 NAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEAD 72
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 35.3 bits (82), Expect = 0.017
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
EEE +EE ++ KEE++ E E + + EE+R + EE+ER+K
Sbjct: 277 EEERQEEAQEKKEEKKKEEREAKLAKLSPEEQR--KLEEKERKK 318
Score = 33.4 bits (77), Expect = 0.072
Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFE-REEEEERRK 96
EE +EE +E +E+++ ERE + + EE+ + E +E +++ RK
Sbjct: 278 EERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322
Score = 33.4 bits (77), Expect = 0.076
Identities = 14/47 (29%), Positives = 31/47 (65%)
Query: 63 DKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVE 109
++EEE++ + EEE +++ +E++ E+++EE K+ S Q+ +E
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLE 312
Score = 30.7 bits (70), Expect = 0.49
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREE-EEERRK 96
EEEEE+ + +EE + E +E++EE+ EE E + EE+RK
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRK 310
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 35.2 bits (81), Expect = 0.018
Identities = 12/57 (21%), Positives = 28/57 (49%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVE 109
++ EE +++ E+ER+++ E+E E++++ E ++ K E K
Sbjct: 87 QQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAA 143
Score = 30.9 bits (70), Expect = 0.48
Identities = 8/42 (19%), Positives = 24/42 (57%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
L++++ E+E K+ E+ +E+++ EE + ++++
Sbjct: 92 LQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQ 133
Score = 30.2 bits (68), Expect = 0.78
Identities = 15/70 (21%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEICP 112
+++E+++ E+ ++++ E+E ++ E + + ++++ EE K + +QK E
Sbjct: 82 KKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQ---AALKQKQAE--- 135
Query: 113 EAVKIPPSAA 122
EA +AA
Sbjct: 136 EAAAKAAAAA 145
Score = 29.4 bits (66), Expect = 1.4
Identities = 12/43 (27%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
EE+ +++E + EE +++ E+E + E+ ER +E++K
Sbjct: 78 EEQRKKKEQQQAEELQQKQAAEQERLKQLEK--ERLAAQEQKK 118
Score = 27.8 bits (62), Expect = 4.8
Identities = 11/57 (19%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 51 YLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERF-EREEEEERRKVTTYSENRQK 106
Y ++++++ EE+R ++E+++ EE +++ ER ++ E+ ++ + +Q
Sbjct: 64 YNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQA 120
Score = 27.5 bits (61), Expect = 7.1
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFERE------EEEERR 95
LE+E +E K+ E ++ +++ EE E E +R
Sbjct: 106 LEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKR 155
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457). This
is a family of uncharacterized proteins.
Length = 449
Score = 35.4 bits (81), Expect = 0.018
Identities = 15/40 (37%), Positives = 31/40 (77%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
EEE EEEDD EE+ + ++E+E++DD++++ + +E+++
Sbjct: 46 EEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDD 85
Score = 34.6 bits (79), Expect = 0.038
Identities = 15/41 (36%), Positives = 31/41 (75%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
E EEE EE+D +EE + +++E+E+DD++++ + E+E++
Sbjct: 44 EAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDD 84
Score = 34.2 bits (78), Expect = 0.050
Identities = 16/40 (40%), Positives = 32/40 (80%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEE 92
EEE EEE+DD+E++ + +E+E+++DD+++E E E+++
Sbjct: 46 EEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDD 85
Score = 33.4 bits (76), Expect = 0.071
Identities = 14/49 (28%), Positives = 33/49 (67%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYS 101
+E EEE E++ ++E + ++++E+EDD++++ E +E+E+ T +
Sbjct: 43 KEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHD 91
Score = 31.9 bits (72), Expect = 0.24
Identities = 11/33 (33%), Positives = 29/33 (87%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEE 84
+EEE+++EE+DD +++ E ++++++++D+E+E
Sbjct: 50 MEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDE 82
Score = 31.5 bits (71), Expect = 0.32
Identities = 9/42 (21%), Positives = 32/42 (76%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
L +E EEE ++++++ + +++++E++D++++ + ++E+E
Sbjct: 41 LGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDE 82
Score = 27.3 bits (60), Expect = 7.4
Identities = 8/41 (19%), Positives = 30/41 (73%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
EE++++++++D++++ + +E++E+EDD++ + ++
Sbjct: 57 EEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADD 97
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase
chain; Provisional.
Length = 1033
Score = 35.5 bits (82), Expect = 0.019
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
+ EEED++E E V R + +DDE E E+EE+
Sbjct: 5 VNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEED 45
Score = 32.1 bits (73), Expect = 0.24
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 45 DSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
+ + T EEE+EEE + +++E ++E+E E +EE E
Sbjct: 2 EEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAE 50
Score = 29.4 bits (66), Expect = 1.8
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 12/56 (21%)
Query: 53 EEEEEEEEED---------DKEEERVEREEEEEEEDDEEEERFERE---EEEERRK 96
EEE+EEE E D +E E E+E+EE+D+E E + E E+ R K
Sbjct: 11 EEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKREKARLK 66
Score = 27.5 bits (61), Expect = 7.9
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 66 EERVEREEEEEEEDDEEEERFEREEEEE 93
EE + EEED+EE E R +
Sbjct: 1 EEEQVNTQANEEEDEEELEAVARSAGSD 28
>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in
mRNA processing and transport [Signal transduction
mechanisms / RNA processing and modification].
Length = 388
Score = 35.3 bits (81), Expect = 0.020
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 45 DSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEE 92
+ Y E+ E E +K+E V EE +EE ++E E E EE
Sbjct: 318 LADFGDYYEDIFEVVEVVEKQEGDVVTEESTDEESEDEVEIDESVIEE 365
Score = 34.1 bits (78), Expect = 0.046
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 50 TYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFERE 89
T E E+E E ++ EE E E E + DD E E E
Sbjct: 348 TDEESEDEVEIDESVIEEVAEMELLEVQVDDLAERLAETE 387
Score = 33.4 bits (76), Expect = 0.090
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 48 IFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDE-EEERFEREEEEERRK 96
IF +E E++E + EE E E+E E D+ EE E E E +
Sbjct: 328 IFEVVEVVEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQVD 377
Score = 33.0 bits (75), Expect = 0.10
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREE 90
EE E+E E D+ E V E E + D+ ER E
Sbjct: 350 EESEDEVEIDESVIEEVAEMELLEVQVDDLAERLAETE 387
Score = 29.9 bits (67), Expect = 1.0
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEE 92
EE +EE + E E E EE E + E + + E
Sbjct: 343 VTEESTDEESEDEVEIDESVIEEVAEMELLEVQVDDLAER 382
>gnl|CDD|237799 PRK14715, PRK14715, DNA polymerase II large subunit; Provisional.
Length = 1627
Score = 35.2 bits (81), Expect = 0.026
Identities = 20/58 (34%), Positives = 40/58 (68%), Gaps = 6/58 (10%)
Query: 31 VLIDSP---RYLDNSGYDSGIFTYLEE-EEEEEEEDDKEEERVEREEEEEEEDDEEEE 84
VL+ +P R++D G + + +L+E +E++EE+D+++ E V+ EE +EE ++EE+
Sbjct: 254 VLLKAPKILRHVDKLGIEG--WDWLKELKEKKEEKDEEKSEEVKTEEVDEEFEEEEKG 309
>gnl|CDD|221250 pfam11831, Myb_Cef, pre-mRNA splicing factor component. This
family is a region of the Myb-Related Cdc5p/Cef1
proteins, in fungi, and is part of the pre-mRNA splicing
factor complex.
Length = 363
Score = 34.6 bits (80), Expect = 0.026
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
+ E E E ++EEE E EEE EED + + +R EE + +
Sbjct: 141 PKNEFELELPEEEEEEPEEMEEELEEDAADRDARKRAAEEAKEQ 184
Score = 33.9 bits (78), Expect = 0.046
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 49 FTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKV 97
F EEEEEE ++ EEE E + + EE E+EE R +V
Sbjct: 145 FELELPEEEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEELRRRSQV 193
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 35.0 bits (80), Expect = 0.030
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 56 EEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEER 94
EE E+ +E E+ REE E E++ E+E ERE E ER
Sbjct: 582 EEAVEKAKREAEQKAREEREREKEKEKEREREREREAER 620
Score = 32.4 bits (73), Expect = 0.22
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENR 104
EE E+ + + +++ R ERE E+E+E + E ER ERE E + ++ E+R
Sbjct: 582 EEAVEKAKREAEQKAREEREREKEKEKERERER-EREAERAAKASSSSHESR 632
Score = 28.9 bits (64), Expect = 2.9
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 64 KEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
K EE VE+ + E E+ EE E+E+E+ER +
Sbjct: 580 KREEAVEKAKREAEQKAREEREREKEKEKERER 612
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 33.9 bits (78), Expect = 0.032
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVE 109
EEE+E +DKE++ +E+EE E++ EEE E +E E+ N +K +
Sbjct: 67 EEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEIT 123
Score = 30.5 bits (69), Expect = 0.52
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 50 TYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSE 102
T EE +EEE++ E E + + E+ED+E EE E E+EE + +E
Sbjct: 59 TAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETE 111
Score = 30.1 bits (68), Expect = 0.60
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVE 109
++E E EE +EE+ E++E++ D E+E E EEE E + EN ++T E
Sbjct: 56 DQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEE 112
Score = 29.7 bits (67), Expect = 0.85
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVE 109
EE +EEE+E E++ ++ + E+E+++ EEE E +EE E + VE
Sbjct: 63 EEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVE 119
Score = 28.2 bits (63), Expect = 2.6
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEE 92
E+E+EE EE+++EE+ +E E+E +++ E E+E
Sbjct: 85 EKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEITN 124
Score = 27.8 bits (62), Expect = 4.1
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
E++E++ + + ++EE E EEE+EE +E E+ E+ E
Sbjct: 75 SEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTES 116
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 34.7 bits (79), Expect = 0.035
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQ 105
+ EE+ + E+ R E EE++DD+EE + ++E E E + + YSE +
Sbjct: 469 QRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKELELEAQGI-KYSETSE 520
>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890). This
family is conserved in dsDNA adenoviruses of
vertebrates. The function is not known.
Length = 172
Score = 33.7 bits (77), Expect = 0.037
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEICPE 113
++EEE+ + EE + EE E+ ED +EE E EE EE ++ + +
Sbjct: 18 KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSSQET 77
Query: 114 AVKIPPSAA 122
IPP+
Sbjct: 78 I-SIPPTPP 85
Score = 29.9 bits (67), Expect = 0.75
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEE 82
+EEE E+ ED +EE E EE EEE
Sbjct: 34 DEEEMEDWEDSLDEEDEEAEEVEEETAASS 63
Score = 29.1 bits (65), Expect = 1.2
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 45 DSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEED 79
DS E+EEE E+ +D +E E EE EEE
Sbjct: 25 DSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEET 59
Score = 28.0 bits (62), Expect = 2.9
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEE 83
EE EE+EEE + E+ ++ E+EE EE +EE
Sbjct: 29 EEVEEDEEEMEDWEDSLDEEDEEAEEVEEET 59
Score = 27.6 bits (61), Expect = 4.3
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 50 TYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEE 84
+ + EE EE++++ E+ + +EE+EE +E EE
Sbjct: 23 DWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEE 57
>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional.
Length = 584
Score = 34.2 bits (79), Expect = 0.041
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 50 TYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEER 94
T L + EE+ ++++ ED+EE++ E EE
Sbjct: 256 TRLPAPPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEEI 300
>gnl|CDD|221333 pfam11942, Spt5_N, Spt5 transcription elongation factor, acidic
N-terminal. This is the very acidic N-terminal region
of the early transcription elongation factor Spt5. The
Spt5-Spt4 complex regulates early transcription
elongation by RNA polymerase II and has an imputed role
in pre-mRNA processing via its physical association
with mRNA capping enzymes. The actual function of this
N-terminal domain is not known although it is
dispensable for binding to Spt4.
Length = 92
Score = 32.4 bits (74), Expect = 0.041
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
+EEEEEEE++ + E + E+E +E + E++R R + R K
Sbjct: 10 DEEEEEEEEEDDLEDLSDEDEFIDEAEAEDDRRHRRLDRRREK 52
Score = 28.6 bits (64), Expect = 0.80
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
EEEEEEEE+D ++ + +E E +D+ R E+ +
Sbjct: 12 EEEEEEEEDDLEDLSDEDEFIDEAEAEDDRRHRRLDRRREKEEE 55
Score = 28.2 bits (63), Expect = 1.2
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 56 EEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERR 95
+ E E DD+EEE E E++ E+ DE+E E E E++RR
Sbjct: 3 DTEAEVDDEEEEEEEEEDDLEDLSDEDEFIDEAEAEDDRR 42
Score = 27.8 bits (62), Expect = 1.7
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 51 YLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
+L+ E E ++E+++EEE + E+ +ED+ +E ++ RR
Sbjct: 1 FLDTEAEVDDEEEEEEEEEDDLEDLSDEDEFIDEAEAEDDRRHRRL 46
>gnl|CDD|215079 PLN00151, PLN00151, potassium transporter; Provisional.
Length = 852
Score = 34.3 bits (79), Expect = 0.041
Identities = 19/79 (24%), Positives = 25/79 (31%), Gaps = 17/79 (21%)
Query: 10 SSPEPERTYLSGLPDSEWLALVLIDSPRYLDNSGYDSGIFTYLEEEEEEEEEDDKEEERV 69
S L G E R++D S DS E+ +DD ++
Sbjct: 10 GSSSNGSGGLVGTDSGES---------RWVDGSEDDS--------EDPASLDDDDDDRDS 52
Query: 70 EREEEEEEEDDEEEERFER 88
EEEED R R
Sbjct: 53 GGGMLEEEEDGNMRRRLIR 71
Score = 27.4 bits (61), Expect = 8.4
Identities = 8/40 (20%), Positives = 17/40 (42%)
Query: 60 EEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTT 99
EDD E+ +++++ + E + RR + T
Sbjct: 33 SEDDSEDPASLDDDDDDRDSGGGMLEEEEDGNMRRRLIRT 72
>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP),
alpha subunit. The alpha-subunit of the TRAP complex
(TRAP alpha) is a single-spanning membrane protein of
the endoplasmic reticulum (ER) which is found in
proximity of nascent polypeptide chains translocating
across the membrane.
Length = 281
Score = 34.0 bits (78), Expect = 0.043
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 29 ALVLIDSPRYLDNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEE 84
L+ + + S D E++ +E+E+D+ + E EEE+DEE E
Sbjct: 17 VLLTFGNGKGPFASAQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72
Score = 34.0 bits (78), Expect = 0.043
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 28 LALVLIDSPRYLDNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFE 87
L L L+ P L G G F ++ E+EE +D + E+EE+E EE+E
Sbjct: 7 LLLTLLAFPAVLLTFGNGKGPFASAQDLTEDEEAEDDVVD----EDEEDEAVVEEDENEL 62
Query: 88 REEEEERRKVTTYSENRQKTV 108
EEEE+ S + T+
Sbjct: 63 TEEEEDEEGEVKASPDADTTI 83
>gnl|CDD|239286 cd02988, Phd_like_VIAF, Phosducin (Phd)-like family, Viral
inhibitor of apoptosis (IAP)-associated factor (VIAF)
subfamily; VIAF is a Phd-like protein that functions in
caspase activation during apoptosis. It was identified
as an IAP binding protein through a screen of a human
B-cell library using a prototype IAP. VIAF lacks a
consensus IAP binding motif and while it does not
function as an IAP antagonist, it still plays a
regulatory role in the complete activation of caspases.
VIAF itself is a substrate for IAP-mediated
ubiquitination, suggesting that it may be a target of
IAPs in the prevention of cell death. The similarity of
VIAF to Phd points to a potential role distinct from
apoptosis regulation. Phd functions as a cytosolic
regulator of G protein by specifically binding to G
protein betagamma (Gbg)-subunits. The C-terminal domain
of Phd adopts a thioredoxin fold, but it does not
contain a CXXC motif. Phd interacts with G protein beta
mostly through the N-terminal helical domain.
Length = 192
Score = 33.4 bits (77), Expect = 0.048
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 47 GIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENR 104
GI +EEEE+ E E E E+ +E E +EEE+ R + Y R
Sbjct: 11 GILPPKPPSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRFLEEYRRKR 68
>gnl|CDD|220135 pfam09184, PPP4R2, PPP4R2. PPP4R2 (protein phosphatase 4 core
regulatory subunit R2) is the regulatory subunit of the
histone H2A phosphatase complex. It has been shown to
confer resistance to the anticancer drug cisplatin in
yeast, and may confer resistance in higher eukaryotes.
Length = 285
Score = 34.0 bits (78), Expect = 0.048
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 40 DNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEE 91
D+ S + ++EE++++D E E +E+EEEE+ EEEE E E+E
Sbjct: 234 DDGPKGSDVKNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 32.1 bits (73), Expect = 0.18
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 34 DSPRYLDNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
S D + ++ ++ ++EEDD ++ E+E +E+++EEE E EEE+E
Sbjct: 224 KESSDAAASQDDGPKGSDVKNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDE 283
>gnl|CDD|117592 pfam09026, Cenp-B_dimeris, Centromere protein B dimerisation
domain. The centromere protein B (CENP-B) dimerisation
domain is composed of two alpha-helices, which are
folded into an antiparallel configuration. Dimerisation
of CENP-B is mediated by this domain, in which monomers
dimerise to form a symmetrical, antiparallel,
four-helix bundle structure with a large hydrophobic
patch in which 23 residues of one monomer form van der
Waals contacts with the other monomer. This CENP-B
dimer configuration may be suitable for capturing two
distant CENP-B boxes during centromeric heterochromatin
formation.
Length = 101
Score = 32.4 bits (73), Expect = 0.050
Identities = 13/34 (38%), Positives = 27/34 (79%)
Query: 51 YLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEE 84
+LE EE+ + + D+EE+ + +EE+++EDD+E++
Sbjct: 5 FLEGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDD 38
Score = 30.9 bits (69), Expect = 0.14
Identities = 11/28 (39%), Positives = 22/28 (78%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDE 81
+ + +EEEDD +E+ + +E+++E+DDE
Sbjct: 13 DSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 30.5 bits (68), Expect = 0.23
Identities = 10/28 (35%), Positives = 22/28 (78%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDD 80
+ + +EEE+DD E+E + E+++E++D+
Sbjct: 13 DSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 29.4 bits (65), Expect = 0.55
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 66 EERVEREEEEEEEDDEEEERFEREEEEE 93
EE + + +EEE+DD+E+E + E+++E
Sbjct: 9 EEDSDSDSDEEEDDDDEDEEDDDEDDDE 36
Score = 25.9 bits (56), Expect = 8.5
Identities = 8/34 (23%), Positives = 25/34 (73%)
Query: 59 EEEDDKEEERVEREEEEEEEDDEEEERFEREEEE 92
E E+D + + E E++++E++++++E + +++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 1001
Score = 34.2 bits (78), Expect = 0.054
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 42 SGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERR 95
S Y++ +E +E+EE D+ E+ E E E + D+E+ E ++ E +
Sbjct: 939 SEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAY 992
Score = 30.0 bits (67), Expect = 1.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEE 92
+E EEE E + + E +E+EE DE E +E E
Sbjct: 932 DESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESE 971
Score = 29.2 bits (65), Expect = 1.8
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
E E E DD+ +E E EE +E +D E+ E + +E
Sbjct: 937 EVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDE 977
Score = 28.8 bits (64), Expect = 2.8
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
+E +E EEE + E + E +E +ED+E +E E E+E
Sbjct: 929 DESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDE 969
Score = 28.4 bits (63), Expect = 3.6
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 46 SGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
S + ++E +E EE+ E E +E +E ++DEE + + E+
Sbjct: 921 SFLMVGSDDESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSED 968
Score = 27.3 bits (60), Expect = 8.9
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 51 YLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
E+ E+E E+D EE+ E+ D+ E + +RRK
Sbjct: 961 SSEDLSEDESEND-----SSDEEDGEDWDELESKAAYDSRPGKRRK 1001
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 33.6 bits (77), Expect = 0.059
Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 44 YDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSEN 103
Y+ + Y ++ E ++E D EE + +EE+ +EE +++E+ + K +
Sbjct: 374 YNKKLQDYTKKLGEVKDETDASEE--AEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDE 431
Query: 104 RQK 106
R+K
Sbjct: 432 RKK 434
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 33.8 bits (78), Expect = 0.062
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
E EE EEE D + E E + ++E++ EE EE+
Sbjct: 230 SETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEK 271
Score = 33.8 bits (78), Expect = 0.072
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQK 106
EE EEE + + E + ++E+E EE+ EE+E T + +
Sbjct: 233 EEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEI 285
Score = 31.9 bits (73), Expect = 0.26
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEE 92
E EEE + E + E ++E+E +E+ F E+E+
Sbjct: 234 EREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKED 273
Score = 31.1 bits (71), Expect = 0.54
Identities = 13/54 (24%), Positives = 26/54 (48%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQK 106
EEE + E E E + ++E+E E+D E+E+ ++ + ++K
Sbjct: 236 EEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEK 289
Score = 29.6 bits (67), Expect = 1.4
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
EE EEE + + + + ++E+E EE+ EE+E+ K
Sbjct: 233 EEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDK 276
Score = 28.4 bits (64), Expect = 3.1
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 38 YLDNSGY--DSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREE 90
D S IF E+++E + D EE+ ++EE++E+ EE+ER E E
Sbjct: 630 SFDISELMKIKQIFRNWIEKKKEFKILDYTEEKTKKEEKKEKNKREEKERIEIAE 684
Score = 27.7 bits (62), Expect = 5.4
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 45 DSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
D I T E + ++E++ EE EE+E+ D+ E+ + E +E++
Sbjct: 240 DVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKKD 291
Score = 27.7 bits (62), Expect = 6.6
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 64 KEEERVEREEEEEEEDDEEEERFEREEEEERRKVTT 99
K +E E EE EEE D E E E + ++ ++ +T
Sbjct: 225 KLKETSETEEREEETDVEIETTSETKGTKQEQEGST 260
Score = 27.3 bits (61), Expect = 7.7
Identities = 10/43 (23%), Positives = 22/43 (51%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
+ ++E+E EE+ EE+E+ D E+ +E++ +
Sbjct: 250 KGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKKDE 292
Score = 27.3 bits (61), Expect = 8.0
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKT 107
+E E E+ +EE VE E E + ++E+ E EE+ + E+ KT
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQ--EGSTEEDPSLFSEEKEDPDKT 277
>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT. This family
consists of several bacterial cobalamin biosynthesis
(CobT) proteins. CobT is involved in the transformation
of precorrin-3 into cobyrinic acid.
Length = 282
Score = 33.2 bits (76), Expect = 0.067
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
L +E E + +D E+E +E+E++++ +EEE E+
Sbjct: 212 LGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDA 256
Score = 32.5 bits (74), Expect = 0.12
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDD----EEEERFEREEEE 92
+ E+ E+E+D KE+E ++ EEEE E+ + E E
Sbjct: 220 DSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMES 263
Score = 29.8 bits (67), Expect = 0.97
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
EE +E E D E+ E + +E+E+DD+ EE +
Sbjct: 210 EELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSL 250
Score = 29.8 bits (67), Expect = 1.1
Identities = 11/61 (18%), Positives = 26/61 (42%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEICP 112
+ E+ E++D +E + ++ EEEE + E + + E + + + P
Sbjct: 218 SADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEASADDTP 277
Query: 113 E 113
+
Sbjct: 278 D 278
Score = 29.0 bits (65), Expect = 1.7
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
L + EE D+ E + E+E++ E+E+ + EEEE
Sbjct: 203 LSSMDMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEES 244
Score = 29.0 bits (65), Expect = 1.8
Identities = 10/61 (16%), Positives = 28/61 (45%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEICP 112
+E E + ED+++E+ + +E++++ ++EE + E+ + E
Sbjct: 214 DEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEASA 273
Query: 113 E 113
+
Sbjct: 274 D 274
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 197
Score = 33.1 bits (75), Expect = 0.067
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVE 109
EE EE E + +EE+ ERE++EE+E + EE+ E + ++ ++ E+ ++ +
Sbjct: 136 EELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQDESETESDD 192
Score = 32.7 bits (74), Expect = 0.098
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
+E EE EE + E R E+ +E E+++++E ER E+ EE+
Sbjct: 133 QEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQ 172
Score = 31.6 bits (71), Expect = 0.20
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEE 91
+E+ +E EE ++ E REE+ +E +D+EE+ EREE+
Sbjct: 128 IEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQ 167
Score = 31.6 bits (71), Expect = 0.23
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 5/46 (10%)
Query: 52 LEEEEEEEEED---DKEEERVEREEE--EEEEDDEEEERFEREEEE 92
+E E EE+ D D+EE+ EREE+ EE+ DD E E E++E E
Sbjct: 142 MEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQDESE 187
Score = 31.2 bits (70), Expect = 0.32
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEER 85
EE+ EE+ DD E E +E++E E E DD++ E+
Sbjct: 165 EEQTIEEQSDDSEHEIIEQDESETESDDDKTEK 197
>gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon.
Length = 431
Score = 33.5 bits (76), Expect = 0.069
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERR 95
E EE + +EE R EEEE+ EE +R REEEE+RR
Sbjct: 213 ALELEELKKKREERRKVLEEEEQRRKQEEADRKSREEEEKRR 254
Score = 31.2 bits (70), Expect = 0.38
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
+EE EE E+ +E E V + E++ + D EE + E +E E
Sbjct: 116 KEESREEREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEP 156
Score = 30.0 bits (67), Expect = 1.1
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
E E EE++KEE R EREE EE E + E+ + E +
Sbjct: 106 AENETVEEEEKEESREEREEVEETEGVTKSEQKNDWRDAEECQ 148
Score = 29.2 bits (65), Expect = 1.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEER 94
E+ E E ++EE+ REE EE E+ E + E++ +
Sbjct: 102 EDSGAENETVEEEEKEESREEREEVEETEGVTKSEQKNDWRD 143
Score = 28.8 bits (64), Expect = 2.4
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSEN 103
EE EE EE + + + + + EE +EE+ E EEEE+ ++ + N
Sbjct: 121 EEREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRGSLEENN 171
Score = 28.1 bits (62), Expect = 4.0
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 51 YLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEI 110
++E+ E E +EEE+ E EE EE EE E + E++ + + +K E
Sbjct: 99 RMQEDSGAENETVEEEEKEESREEREE--VEETEGVTKSEQKNDWRDAEECQKEEKEPEP 156
Query: 111 CPEAVKIPPS 120
E S
Sbjct: 157 EEEEKPKRGS 166
>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM).
This family consists of several Plasmodium falciparum
SPAM (secreted polymorphic antigen associated with
merozoites) proteins. Variation among SPAM alleles is
the result of deletions and amino acid substitutions in
non-repetitive sequences within and flanking the
alanine heptad-repeat domain. Heptad repeats in which
the a and d position contain hydrophobic residues
generate amphipathic alpha-helices which give rise to
helical bundles or coiled-coil structures in proteins.
SPAM is an example of a P. falciparum antigen in which
a repetitive sequence has features characteristic of a
well-defined structural element.
Length = 164
Score = 32.9 bits (75), Expect = 0.070
Identities = 20/41 (48%), Positives = 30/41 (73%)
Query: 56 EEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
+E++E+D++EEE E E EE E+ ++EEE E EEEEE +
Sbjct: 45 DEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDE 85
Score = 32.5 bits (74), Expect = 0.080
Identities = 18/59 (30%), Positives = 35/59 (59%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEI 110
+E++E++EE+++E+E E E+ E+++E E E EEE+E V ++ +I
Sbjct: 44 KDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDI 102
Score = 31.8 bits (72), Expect = 0.15
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVT 98
+EEE EE ED ++EE + +EEEEEED+E+ + E++ +
Sbjct: 58 DEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDIF 103
Score = 29.4 bits (66), Expect = 1.0
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEI 110
EEEEEE+EE+ +E E +E EEE E+++EEEE E + + + ++ T +
Sbjct: 52 EEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDIFNSTQDD 109
>gnl|CDD|237628 PRK14156, PRK14156, heat shock protein GrpE; Provisional.
Length = 177
Score = 32.9 bits (75), Expect = 0.073
Identities = 20/50 (40%), Positives = 26/50 (52%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSE 102
EE EEE E + EE VE EE E E E ER +E E + + ++E
Sbjct: 7 NEEVEEEVEATETEETVEEVVEETPEKSELELANERADEFENKYLRAHAE 56
Score = 27.5 bits (61), Expect = 5.1
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 57 EEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENR 104
EE ++++ EE VE E EE ++ EE E+ E E + EN+
Sbjct: 2 SEEIKNEEVEEEVEATETEETVEEVVEETPEKSELELANERADEFENK 49
Score = 26.7 bits (59), Expect = 8.1
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEER 94
EE + EE ++E E E EE EE +E E+ E E ER
Sbjct: 2 SEEIKNEEVEEEVEATETEETVEEVVEETPEKSELELANER 42
>gnl|CDD|227496 COG5167, VID27, Protein involved in vacuole import and degradation
[Intracellular trafficking and secretion].
Length = 776
Score = 33.4 bits (76), Expect = 0.077
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENR 104
EE E EE+ ++ E + +DDE E F +E+ V + R
Sbjct: 379 NPEESEHEEEVEDYEDENDHSKRICDDDELENHFRAADEKNSHLVVGFRNER 430
Score = 30.7 bits (69), Expect = 0.65
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 7/54 (12%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFER-------EEEEERRKVT 98
+ ++ E + E R E E EEE ++ E+ + +E E +
Sbjct: 362 KQFDDILYFEKMEIENRNPEESEHEEEVEDYEDENDHSKRICDDDELENHFRAA 415
Score = 30.3 bits (68), Expect = 0.80
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
L+ E+ + E+ E E +E E E E+ E+
Sbjct: 353 LDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYED 394
Score = 30.3 bits (68), Expect = 0.91
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTV 108
L E+ E E + EE E E E+ E++++ +R ++E E +N V
Sbjct: 368 LYFEKMEIENRNPEESEHEEEVEDYEDENDHSKRICDDDELENHFRAADEKNSHLVV 424
Score = 29.6 bits (66), Expect = 1.6
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 54 EEEEEEEEDDKEEERVEREE--EEEEEDDEEEERFEREEEEERR 95
E++ +D E++E E EE E +EE E +E E + +R
Sbjct: 358 VPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDENDHSKR 401
Score = 29.2 bits (65), Expect = 2.2
Identities = 11/52 (21%), Positives = 23/52 (44%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSEN 103
L E+ EE ++++ ++ E+ ++ FE+ E E R + E
Sbjct: 336 LNNEKWGNEEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEE 387
Score = 27.3 bits (60), Expect = 8.5
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEE-DDEEEERFEREEEEERRKVTTYSENRQKTVEIC 111
EE E ++ D +E++ ++ + E E EE E +V Y + + IC
Sbjct: 344 EEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDENDHSKRIC 403
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 33.4 bits (77), Expect = 0.078
Identities = 8/41 (19%), Positives = 27/41 (65%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
++E+++E++DD + + + E++E +E ++ + + +E+
Sbjct: 152 DDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDED 192
Score = 32.3 bits (74), Expect = 0.18
Identities = 12/58 (20%), Positives = 33/58 (56%)
Query: 39 LDNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
LD+ D ++E++++++ D E+E + +E E+ D+++ ++ ++ E R+
Sbjct: 142 LDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQ 199
Score = 32.3 bits (74), Expect = 0.22
Identities = 9/58 (15%), Positives = 30/58 (51%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVE 109
++++E+++EDD +++ + +EE++E + E+ + + + + R+
Sbjct: 149 DDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARKDAKL 206
Score = 30.7 bits (70), Expect = 0.67
Identities = 9/54 (16%), Positives = 31/54 (57%)
Query: 40 DNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
+ D +++ ++++ DD +++ + E++++++ D+E+E + +E E
Sbjct: 126 VLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELE 179
Score = 30.3 bits (69), Expect = 0.77
Identities = 10/53 (18%), Positives = 35/53 (66%)
Query: 50 TYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSE 102
+++++ +++D +++ E ++E++++DD ++E E++E +E K++ +
Sbjct: 134 DDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDD 186
Score = 29.2 bits (66), Expect = 1.7
Identities = 13/56 (23%), Positives = 34/56 (60%)
Query: 38 YLDNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
+ N D ++ ++++ +DD ++E + ++++++ DDE+EE+ E +E E+
Sbjct: 125 DVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEK 180
Score = 29.2 bits (66), Expect = 2.0
Identities = 9/53 (16%), Positives = 37/53 (69%)
Query: 41 NSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
N D + +++++++++DD +++ ++ ++++E++D+++++ +E+EE
Sbjct: 119 NYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEE 171
Score = 28.8 bits (65), Expect = 2.3
Identities = 11/55 (20%), Positives = 34/55 (61%)
Query: 39 LDNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
L+ + D + ++++ ++DD +E+ E +++++ +D++EE++ +E E+
Sbjct: 127 LNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKL 181
Score = 28.4 bits (64), Expect = 3.7
Identities = 9/54 (16%), Positives = 31/54 (57%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQK 106
++++++E+DD++++ + ++E+EE+ + +E ++++ RQ
Sbjct: 147 IDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQA 200
>gnl|CDD|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A. The
CAF-1 or chromatin assembly factor-1 consists of three
subunits, and this is the first, or A. The A domain is
uniquely required for the progression of S phase in
mouse cells, independent of its ability to promote
histone deposition but dependent on its ability to
interact with HP1 - heterochromatin protein 1-rich
heterochromatin domains next to centromeres that are
crucial for chromosome segregation during mitosis. This
HP1-CAF-1 interaction module functions as a built-in
replication control for heterochromatin, which, like a
control barrier, has an impact on S-phase progression
in addition to DNA-based checkpoints.
Length = 76
Score = 31.0 bits (71), Expect = 0.087
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 10/44 (22%)
Query: 41 NSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEE 84
+ YDS E EEEEE ED +E E+EE+EE+D++++
Sbjct: 39 DYDYDSD----AEWEEEEEGED------LESEDEEDEEEDDDDD 72
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 33.4 bits (76), Expect = 0.089
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
+ EE ED E + E E++ED EE E + EEE K
Sbjct: 294 GNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSK 336
Score = 31.9 bits (72), Expect = 0.28
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
E++ E K E + + EE EE+ EEE ++ ++ +K
Sbjct: 300 REDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKK 343
Score = 29.2 bits (65), Expect = 2.1
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQK 106
+ D +E E E + + E++E E EEE+ + S+ +K
Sbjct: 289 DSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKK 340
Score = 28.4 bits (63), Expect = 3.3
Identities = 11/51 (21%), Positives = 22/51 (43%)
Query: 48 IFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVT 98
+ + E+ +++ E + E E DE+ E E E+ EE ++
Sbjct: 285 DYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLS 335
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 33.3 bits (76), Expect = 0.098
Identities = 17/57 (29%), Positives = 37/57 (64%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVE 109
+ E +EEE +KE+ + E+++++E+ +E ++R +EE +E+R + ++K VE
Sbjct: 99 KNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVE 155
Score = 29.9 bits (67), Expect = 1.2
Identities = 14/71 (19%), Positives = 36/71 (50%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEICP 112
EEE+E+E+ ++++++ E+ +EE ++ +EE E+ +E+ K + E
Sbjct: 105 EEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEK 164
Query: 113 EAVKIPPSAAT 123
+ ++ +
Sbjct: 165 KRERVRAKSRP 175
Score = 28.3 bits (63), Expect = 3.6
Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVE 109
+E + E KEEE+ + + +EE++ +E+ + E ++ + K + K E
Sbjct: 95 AKEPKNESGKEEEKEKEQVKEEKKKKKEKPK--EEPKDRKPKEEAKEKRPPKEKE 147
Score = 27.5 bits (61), Expect = 5.8
Identities = 13/70 (18%), Positives = 29/70 (41%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEICP 112
E+ +E+E +KE++ E + EEE+ E R ++ ++K + + +
Sbjct: 139 EKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQ 198
Query: 113 EAVKIPPSAA 122
A +
Sbjct: 199 AAREAVKGKP 208
Score = 27.2 bits (60), Expect = 9.2
Identities = 13/58 (22%), Positives = 29/58 (50%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEI 110
+E EEE++ E V+ + EE + ++E E+ + ++ E + +++ EI
Sbjct: 188 KEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQSSEI 245
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 32.4 bits (74), Expect = 0.11
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 43 GYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
GY + E E E + + +VE+E E EEE+ +E+++ + ++E++ K
Sbjct: 117 GYGAPDGPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEK 170
>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated.
Length = 330
Score = 32.9 bits (76), Expect = 0.11
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEE 84
L+E + + EE E EEEEEEE+ EEE
Sbjct: 288 LKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 31.4 bits (72), Expect = 0.32
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
+++ +EE + + + EEEE++EEEE E EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 28.7 bits (65), Expect = 2.3
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEE 92
L+EE +E + E EEEEEEE++EEE EEE
Sbjct: 284 LDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEP----SEEE 320
Score = 26.8 bits (60), Expect = 9.7
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
L +++ +EE + + EEE++EEEE E E EE
Sbjct: 278 LADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEE 319
>gnl|CDD|115196 pfam06524, NOA36, NOA36 protein. This family consists of several
NOA36 proteins which contain 29 highly conserved
cysteine residues. The function of this protein is
unknown.
Length = 314
Score = 32.6 bits (74), Expect = 0.13
Identities = 8/47 (17%), Positives = 21/47 (44%)
Query: 43 GYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFERE 89
+ + Y +++E +D +EE +++ E+ DD + +
Sbjct: 263 DFKGVNYGYESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 31.5 bits (71), Expect = 0.27
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 59 EEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVT 98
E DD E +EEE+ DD++ E + +
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDEDC 310
Score = 31.1 bits (70), Expect = 0.42
Identities = 9/44 (20%), Positives = 19/44 (43%)
Query: 58 EEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYS 101
E +DD+ + +EEE+ +DD+ E+ + +
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDEDCDNGA 314
Score = 30.7 bits (69), Expect = 0.58
Identities = 6/52 (11%), Positives = 22/52 (42%)
Query: 42 SGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
S E +++E + E E+ +++++++ ++ +E+
Sbjct: 258 SNKYGDFKGVNYGYESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 27.2 bits (60), Expect = 7.1
Identities = 6/36 (16%), Positives = 15/36 (41%)
Query: 72 EEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKT 107
++E +D +EE +++ E T + +
Sbjct: 275 DDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDEDC 310
>gnl|CDD|222792 PHA00435, PHA00435, capsid assembly protein.
Length = 306
Score = 32.5 bits (74), Expect = 0.13
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 56 EEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
E++E E E EEEE E+ EE+E E EEE E
Sbjct: 63 FGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESE 100
Score = 31.3 bits (71), Expect = 0.33
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
E++E + + E E EE EE E+DEEEE E EE E
Sbjct: 63 FGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFE 103
Score = 30.6 bits (69), Expect = 0.50
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 51 YLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
Y + E+++ + E R+ + EEEE ++ EE+ E EEE
Sbjct: 57 YGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEES 99
Score = 27.5 bits (61), Expect = 5.8
Identities = 15/51 (29%), Positives = 20/51 (39%)
Query: 43 GYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
G D+ E ++ D E E E +D EEE E EE+E
Sbjct: 41 GDDAIELAEPETSDDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDE 91
>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional.
Length = 191
Score = 31.9 bits (73), Expect = 0.14
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEE 91
E E EE ED+ EEE VE E E E D+E+ + E E +
Sbjct: 14 ETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAK 52
Score = 30.4 bits (69), Expect = 0.52
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEER 94
+ E+ EEE ++ E E +E EEE +EE E +EE+ +
Sbjct: 4 KNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAK 45
Score = 30.4 bits (69), Expect = 0.59
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEE 92
+EEE EE E ++ E+ VE E EEE + E + + + E
Sbjct: 8 VEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAE 48
Score = 29.2 bits (66), Expect = 1.4
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFER---EEEEERRKVTTYSENRQK 106
EE EEE E + +E + E E + DE EER+ R + E +R++ +E +K
Sbjct: 27 EETVEEESEAELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEK 83
Score = 28.8 bits (65), Expect = 1.6
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
EE EE E E+ E+E E EEE E + +E + E E
Sbjct: 10 EEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELE 50
Score = 28.8 bits (65), Expect = 1.9
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 56 EEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
EE+ E +EE EE E++ EEE E E E
Sbjct: 1 MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAEL 38
Score = 28.4 bits (64), Expect = 2.2
Identities = 17/51 (33%), Positives = 22/51 (43%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENR 104
EEE EE E ++ E EE EEE + E E+ + E E R
Sbjct: 9 EEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEER 59
Score = 26.9 bits (60), Expect = 6.7
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEE 92
EE+ E+ ++E E E EE E+E +EE E E E
Sbjct: 1 MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAEL 38
Score = 26.9 bits (60), Expect = 7.5
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
EE+ E+ E++ EE VE E+E E++ EE E E +E
Sbjct: 1 MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDE 41
>gnl|CDD|184885 PRK14891, PRK14891, 50S ribosomal protein L24e/unknown domain
fusion protein; Provisional.
Length = 131
Score = 31.5 bits (71), Expect = 0.15
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
+E E + D+ +E E +E +E DE + E +EEE
Sbjct: 85 ADEAAEADAADEADEEEETDEAVDETADEADAEAEEADEEE 125
Score = 29.9 bits (67), Expect = 0.47
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
E + +E D+EEE E +E +E D E E + EE+EE
Sbjct: 87 EAAEADAADEADEEEETDEAVDETADEADAEAEEADEEEDEE 128
Score = 29.5 bits (66), Expect = 0.62
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
+E E + D+ +EE E +E D+ + E E +EEE+
Sbjct: 86 DEAAEADAADEADEEEETDEAVDETADEADAEAEEADEEED 126
Score = 29.5 bits (66), Expect = 0.77
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
E + +E+ D+ E E +EEEE DE + E + E
Sbjct: 77 EAADADEDADEAAEADAADEADEEEETDEAVDETADEADAE 117
Score = 28.4 bits (63), Expect = 1.7
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
E + +E ++++E + E +E + + EE E +EE E
Sbjct: 90 EADAADEADEEEETDEAVDETADEADAEAEEADEEEDEEAE 130
Score = 28.4 bits (63), Expect = 1.9
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
EE E + D+ +E E + +E +++EE + E +E
Sbjct: 74 EEAEAADADEDADEAAEADAADEADEEEETDEAVDETADE 113
Score = 27.6 bits (61), Expect = 2.6
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
E EE E D E+ E + +E DEEEE E +E
Sbjct: 71 EAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETA 111
Score = 27.6 bits (61), Expect = 3.2
Identities = 11/59 (18%), Positives = 22/59 (37%)
Query: 45 DSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSEN 103
++G + EE +E+ +E E + E +EEEE + + +
Sbjct: 54 EAGRAEKGPAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETAD 112
Score = 26.8 bits (59), Expect = 5.3
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
+ +E +E+++ +E V+ +E + + EE + E EE E
Sbjct: 91 ADAADEADEEEETDEAVDETADEADAEAEEADEEEDEEAEA 131
Score = 26.5 bits (58), Expect = 6.5
Identities = 12/57 (21%), Positives = 25/57 (43%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVE 109
EE E + ++D +E +E +E++E +E + +E + E + E
Sbjct: 74 EEAEAADADEDADEAAEADAADEADEEEETDEAVDETADEADAEAEEADEEEDEEAE 130
>gnl|CDD|221756 pfam12757, DUF3812, Protein of unknown function (DUF3812). This is
a family of fungal proteins whose function is not known.
Length = 126
Score = 31.1 bits (71), Expect = 0.15
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 62 DDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
D++ E + R+EE++ +++E + + E +E ER K
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREK 124
Score = 26.9 bits (60), Expect = 4.8
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFERE 89
++E E + D+E++ E E + + E+ +E ER +++
Sbjct: 89 IDERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 32.8 bits (75), Expect = 0.15
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEE--------ERFEREEEEERRKV 97
+ +EEE +E+E E EE E E+ ER E E E +R++
Sbjct: 395 SKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKREL 445
Score = 28.5 bits (64), Expect = 2.8
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKV 97
+E+ E E E +E R++ E D ER E+E EE++++V
Sbjct: 452 IEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRV 497
Score = 27.4 bits (61), Expect = 7.5
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 59 EEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
+ E+ + ++ EE E ++EE R EE RR+
Sbjct: 611 DSEELRRAIEEWKKRFEERERRQKEEDILRIIEEYRRE 648
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 32.5 bits (75), Expect = 0.16
Identities = 18/65 (27%), Positives = 25/65 (38%)
Query: 58 EEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEICPEAVKI 117
EEEE KEE + E EEE + E +E EE + +E + A +
Sbjct: 39 EEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARP 98
Query: 118 PPSAA 122
A
Sbjct: 99 AEDEA 103
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97
family. This model family represents the major capsid
protein component of the heads (capsids) of
bacteriophage HK97, phi-105, P27, and related phage.
This model represents one of several analogous families
lacking detectable sequence similarity. The gene
encoding this component is typically located in an
operon encoding the small and large terminase subunits,
the portal protein and the prohead or maturation
protease [Mobile and extrachromosomal element
functions, Prophage functions].
Length = 384
Score = 32.3 bits (74), Expect = 0.16
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERR 95
+ E+E+ + EE + +EE D+ + +R EE
Sbjct: 16 RKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDE 57
Score = 30.0 bits (68), Expect = 0.94
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVT 98
E+ E EEE + + E ++ + E D EE + E +
Sbjct: 22 EKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASGE 67
Score = 27.7 bits (62), Expect = 4.7
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
E + +EE DK + ++R EE +E + + E +
Sbjct: 32 AEYDALKEEIDKLDAEIDRLEELLDELEAKPAASGEGGGGEEEE 75
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 32.7 bits (74), Expect = 0.16
Identities = 13/70 (18%), Positives = 30/70 (42%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEICPE 113
EE +ED ++++ + E++E+ +++ E +E EE E ++ +
Sbjct: 4038 EENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQ 4097
Query: 114 AVKIPPSAAT 123
A+ P
Sbjct: 4098 AIDNHPKMDA 4107
Score = 30.7 bits (69), Expect = 0.66
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 49 FTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEER 94
F+ L E++E+ ED EE E EE E+ +EE + E E++
Sbjct: 4052 FSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQ 4097
Score = 28.8 bits (64), Expect = 3.3
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 39 LDNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVT 98
LD D + LE+ + E +++KEE E++E ++ED EE +E+ ++ +
Sbjct: 3995 LDEKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDEDPLEENN-TLDEDIQQDDFS 4053
Query: 99 TYSENRQKTVEICPE 113
+E+ +K E E
Sbjct: 4054 DLAEDDEKMNEDGFE 4068
Score = 27.7 bits (61), Expect = 7.3
Identities = 10/40 (25%), Positives = 23/40 (57%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
E+++ +E++D+EE + ++E + D +E + E E
Sbjct: 3946 EDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENE 3985
Score = 27.7 bits (61), Expect = 7.4
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEE----EERRKVTTYSENRQKTVE 109
E+++ EE EE+ + + +E E E E + E + EN+ E
Sbjct: 3832 NEDDDLEELANEEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEE 3891
Query: 110 I 110
+
Sbjct: 3892 V 3892
Score = 27.3 bits (60), Expect = 8.0
Identities = 10/43 (23%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEE--EEDDEEEERFEREEEEE 93
E++ E+ + E + V +E++ + E+ D +E+ E E ++
Sbjct: 3920 EQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDD 3962
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 32.8 bits (74), Expect = 0.17
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKV 97
EE ++ EED K+ E ++ EE+E++ E ++ E EE +K
Sbjct: 1664 AEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKK----EAEEAKKA 1704
Score = 32.4 bits (73), Expect = 0.19
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 53 EEEEEEEEEDDKEEERVEREEE---EEEEDDEEEERFEREEEEERRK 96
EE ++ EE KE E ++ EE EEE+ + E ++E EE+++K
Sbjct: 1699 EEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKK 1745
Score = 32.0 bits (72), Expect = 0.26
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 10/55 (18%)
Query: 53 EEEEEEEEEDDKEEERVEREEEE----------EEEDDEEEERFEREEEEERRKV 97
EE ++ EE++ K E +++E EE E E+ ++ E ++ EEE + K
Sbjct: 1678 EEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKA 1732
Score = 31.3 bits (70), Expect = 0.44
Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEE----ERFEREEEEERRK 96
EE++++ E+ K+ E E++ E + + EE E +++E EE++K
Sbjct: 1670 AEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKK 1717
Score = 30.9 bits (69), Expect = 0.61
Identities = 14/56 (25%), Positives = 29/56 (51%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVE 109
EE ++ E+DK++ ++ EE+E+ E + E EE ++ ++ +K E
Sbjct: 1664 AEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAE 1719
Score = 30.5 bits (68), Expect = 0.73
Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 11/56 (19%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEE-----------EEEDDEEEERFEREEEEERRK 96
+E+ +++E E+ K+ E +++ EEE EED ++ E ++ EE+E++
Sbjct: 1635 VEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKA 1690
Score = 30.5 bits (68), Expect = 0.91
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 11/76 (14%)
Query: 53 EEEEEEEEEDDKEEERVEREEE-----------EEEEDDEEEERFEREEEEERRKVTTYS 101
EE +++E E+ K+ E +++ EE E EED ++ E +++EEE+++
Sbjct: 1705 EELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKK 1764
Query: 102 ENRQKTVEICPEAVKI 117
E +K EI E +
Sbjct: 1765 EEEKKAEEIRKEKEAV 1780
Score = 30.1 bits (67), Expect = 1.2
Identities = 14/58 (24%), Positives = 32/58 (55%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEI 110
EE ++ EEE+ + ++ EE+++ EE ++ E +E++ + +E +K E+
Sbjct: 1650 EELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEEL 1707
Score = 28.6 bits (63), Expect = 3.8
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 52 LEEEEEE----EEEDDKEEERVEREEE---EEEEDDEEEERFEREEEEERRK 96
L++ EEE E+ KE E ++ EE EEE+ + ++ EE+++K
Sbjct: 1625 LKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKK 1676
Score = 28.2 bits (62), Expect = 4.3
Identities = 16/57 (28%), Positives = 34/57 (59%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVE 109
EE + + EE KE E +++ EE ++D+EE+++ ++EE +K + ++ +E
Sbjct: 1726 EENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIE 1782
Score = 27.4 bits (60), Expect = 7.8
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 51 YLEEEEEEEEEDDKEEERVEREEE---EEEEDDEEEERFEREEEEERRKVTTYSENRQKT 107
Y EE++ + EE K EE + EE EEE + E+ ++E EE+++ +
Sbjct: 1601 YEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENK 1660
Query: 108 VEICPEAVK 116
++ EA K
Sbjct: 1661 IKAAEEAKK 1669
>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation
factor RRN3. This family consists of several eukaryotic
proteins which are homologous to the yeast RRN3 protein.
RRN3 is one of the RRN genes specifically required for
the transcription of rDNA by RNA polymerase I (Pol I) in
Saccharomyces cerevisiae.
Length = 554
Score = 32.3 bits (74), Expect = 0.17
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEER 94
L++ ++EEEE +E + E++ + DD++EE + E E
Sbjct: 222 LDDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTS 264
Score = 31.1 bits (71), Expect = 0.52
Identities = 10/49 (20%), Positives = 25/49 (51%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSE 102
++ ++EEE+ + + +E++ + D+++E E E + SE
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTSTIKEVSE 271
Score = 29.6 bits (67), Expect = 1.4
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTY 100
++EEEE E++ E + + ++DDEEE E E ++V+
Sbjct: 226 DDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTSTIKEVSEK 272
>gnl|CDD|187703 cd09279, RNase_HI_archaeal_like, RNAse HI family that includes
Archaeal RNase HI. Ribonuclease H (RNase H) is
classified into two evolutionarily unrelated families,
type 1 (prokaryotic RNase HI, eukaryotic RNase H1 and
viral RNase H) and type 2 (prokaryotic RNase HII and
HIII, and eukaryotic RNase H2). RNase H is an
endonuclease that cleaves the RNA strand of an RNA/DNA
hybrid in a sequence non-specific manner. RNase H is
involved in DNA replication, repair and transcription.
RNase H is widely present in various organisms,
including bacteria, archaea and eukaryotes and most
prokaryotic and eukaryotic genomes contain multiple
RNase H genes. Despite the lack of amino acid sequence
homology, Type 1 and type 2 RNase H share a main-chain
fold and steric configurations of the four acidic
active-site (DEDD) residues and have the same catalytic
mechanism and functions in cells. One of the important
functions of RNase H is to remove Okazaki fragments
during DNA replication. Most archaeal genomes contain
only type 2 RNase H (RNase HII); however, a few contain
RNase HI as well. Although archaeal RNase HI sequences
conserve the DEDD active-site motif, they lack other
common features important for catalytic function, such
as the basic protrusion region. Archaeal RNase HI
homologs are more closely related to retroviral RNase HI
than bacterial and eukaryotic type I RNase H in
enzymatic properties.
Length = 128
Score = 30.9 bits (71), Expect = 0.19
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 140 LSKLD-VQFVWVPSHVGIAGNEEADRLAKEALT 171
L K + V+ W+P N+EAD LA +AL
Sbjct: 100 LKKFEEVEIKWIPRE----ENKEADALANQALD 128
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 31.6 bits (72), Expect = 0.21
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
Query: 45 DSGIFTYLEEEEEEEEEDDKEE---------ERVEREEEEEEEDDEEEERFEREEEEERR 95
DS + + +++ ++DD E+ E++++E EE+E +EEE+ E E+ E
Sbjct: 121 DSDSSSDSDSSDDDSDDDDSEDETAALLRELEKIKKERAEEKEREEEEKAAEEEKAREEE 180
Score = 30.5 bits (69), Expect = 0.54
Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 11/56 (19%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEE-----------RFEREEEEERRK 96
E+ + +D + +++ ++DD E+E + ER EE+ER +
Sbjct: 111 EEDARNSDADDSDSSSDSDSSDDDSDDDDSEDETAALLRELEKIKKERAEEKEREE 166
>gnl|CDD|218561 pfam05340, DUF740, Protein of unknown function (DUF740). This
family consists of several uncharacterized plant
proteins of unknown function.
Length = 565
Score = 32.3 bits (73), Expect = 0.22
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 13/76 (17%)
Query: 62 DDKEEERVEREEEEEEEDDEEE------ERFEREEEEERRKVTTY----SENRQKTVEIC 111
D EE E E EE+EE E+E E+ E EEEEE + + + S+ ++ +V+
Sbjct: 137 DLVLEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKDFIDLESQTKKPSVKDN 196
Query: 112 PEAVKIPPSAATILTK 127
++ SAA++ +K
Sbjct: 197 GKSFW---SAASVFSK 209
>gnl|CDD|219355 pfam07267, Nucleo_P87, Nucleopolyhedrovirus capsid protein P87.
This family consists of several Nucleopolyhedrovirus
capsid protein P87 sequences. P87 is expressed late in
infection and concentrated in infected cell nuclei.
Length = 606
Score = 32.2 bits (73), Expect = 0.22
Identities = 36/139 (25%), Positives = 52/139 (37%), Gaps = 35/139 (25%)
Query: 12 PEPERTYLSGLPDSEWLALVLIDSPRYLDNSGYDSGIFT------------YLEEEEE-- 57
PEP T+ L + L I S D+ DSG Y +E+E
Sbjct: 318 PEPIYTWEELLRERFPSDLFAISSLPDSDSEASDSGPTRKRKRRRVPPLPEYSSDEDEDD 377
Query: 58 -EEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEI------ 110
+E+E D E+ER R EE++ F R + E K +E +K V++
Sbjct: 378 SDEDEVDYEKERKRRREEDKN--------FLRLKALELSKYAGVNERMEKIVQVTRAMQR 429
Query: 111 ------CPEAVKIPPSAAT 123
C + PSAA
Sbjct: 430 TYDYCNCKNTINGTPSAAN 448
>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4
(TAF4) is one of several TAFs that bind TBP and is
involved in forming Transcription Factor IID (TFIID)
complex. The TATA Binding Protein (TBP) Associated
Factor 4 (TAF4) is one of several TAFs that bind TBP and
are involved in forming the Transcription Factor IID
(TFIID) complex. TFIID is one of seven General
Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE,
TFIIF, and TFIID) that are involved in accurate
initiation of transcription by RNA polymerase II in
eukaryote. TFIID plays an important role in the
recognition of promoter DNA and assembly of the
pre-initiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs from various species were
originally named by their predicted molecular weight or
their electrophoretic mobility in polyacrylamide gels. A
new, unified nomenclature for the pol II TAFs has been
suggested to show the relationship between TAF orthologs
and paralogs. Several hypotheses are proposed for TAFs
functions such as serving as activator-binding sites,
core-promoter recognition or a role in essential
catalytic activity. Each TAF, with the help of a
specific activator, is required only for the expression
of subset of genes and is not universally involved for
transcription as are GTFs. In yeast and human cells,
TAFs have been found as components of other complexes
besides TFIID. Several TAFs interact via histone-fold
(HFD) motifs; HFD is the interaction motif involved in
heterodimerization of the core histones and their
assembly into nucleosome octamers. The minimal HFD
contains three alpha-helices linked by two loops and is
found in core histones, TAFS and many other
transcription factors. TFIID has a histone octamer-like
substructure. TAF4 domain interacts with TAF12 and makes
a novel histone-like heterodimer that binds DNA and has
a core promoter function of a subset of genes.
Length = 212
Score = 31.5 bits (72), Expect = 0.24
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFE------REEEEERRK 96
E+ E EEE+ ++EE ER + E+ + +EE+EE R
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRH 168
Score = 27.7 bits (62), Expect = 4.6
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 60 EEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVT 98
E+ ++EEE EEE E + R E+ +++ K
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEM 158
Score = 26.9 bits (60), Expect = 8.0
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
EEE+ +EEE ++ + E+ + +E + E+EE R +
Sbjct: 126 EEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRHR 169
>gnl|CDD|220438 pfam09845, DUF2072, Zn-ribbon containing protein (DUF2072). This
archaeal protein has no known function.
Length = 121
Score = 30.5 bits (69), Expect = 0.25
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 49 FTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEER 94
F Y+ E + + + +E+ E E E +EE E ++ E+ EE ER
Sbjct: 30 FLYVRERKRPKPDVPEEKPVEEIERETDEELLEVKQDREQGEEGER 75
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid).
Members of this family are bacterial proteins with a
conserved motif [KR]FYDLN, sometimes flanked by a pair
of CXXC motifs, followed by a long region of low
complexity sequence in which roughly half the residues
are Asp and Glu, including multiple runs of five or
more acidic residues. The function of members of this
family is unknown.
Length = 104
Score = 30.4 bits (69), Expect = 0.26
Identities = 6/35 (17%), Positives = 25/35 (71%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFE 87
E+ +++E+++ E++ V +++++++DD+ + +
Sbjct: 51 EDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDD 85
Score = 29.6 bits (67), Expect = 0.48
Identities = 7/32 (21%), Positives = 24/32 (75%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEE 84
E+ +++ED+++E+ V +++++++DD++
Sbjct: 50 AEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLP 81
Score = 28.0 bits (63), Expect = 1.4
Identities = 7/29 (24%), Positives = 18/29 (62%)
Query: 56 EEEEEEDDKEEERVEREEEEEEEDDEEEE 84
+ E+ K++E E E++ +DD++++
Sbjct: 47 AADAEDAAKKDEDEEDEDDVVLDDDDDDD 75
Score = 28.0 bits (63), Expect = 1.5
Identities = 6/41 (14%), Positives = 24/41 (58%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
+ E+ + D++EE + ++++DD++++ ++++
Sbjct: 47 AADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDD 87
Score = 26.1 bits (58), Expect = 8.3
Identities = 6/42 (14%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
+ ++++++++DD + + + + +++DD+ E ++++E
Sbjct: 67 VLDDDDDDDDDDDLPDLDDDDVDLDDDDDDFLE----DDDDE 104
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho;
Provisional.
Length = 672
Score = 31.8 bits (73), Expect = 0.27
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERR 95
E+ E D E E E +E + E+R E ER
Sbjct: 149 GEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERG 191
Score = 31.8 bits (73), Expect = 0.30
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
E + E ++EE R + E+ E ER ER EER +
Sbjct: 155 EARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGR 198
Score = 28.7 bits (65), Expect = 2.8
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEE----ERFEREEEEERRKVTTYSENRQ 105
+ E+ + + + ER REE + DD + E+ +R EE RR R+
Sbjct: 175 RGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRR 231
Score = 28.3 bits (64), Expect = 3.3
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERR 95
+ E EE++++E R + E+ + + E ER REE
Sbjct: 158 ADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDG 200
>gnl|CDD|219939 pfam08619, Nha1_C, Alkali metal cation/H+ antiporter Nha1 C
terminus. The C terminus of the plasma membrane Nha1
antiporter plays an important role in the immediate cell
response to hypo-osmotic shock which prevents an
execessive loss of ions and water. This domain is found
with pfam00999.
Length = 430
Score = 31.7 bits (72), Expect = 0.28
Identities = 13/66 (19%), Positives = 22/66 (33%)
Query: 37 RYLDNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
R + + E+ + + R E +E EE R + E+E+R
Sbjct: 104 RRSSTGENSAESDNTSYGLSKLAEDSENIDVRPVYESDERSGISEEGSRPSKLREQEQRP 163
Query: 97 VTTYSE 102
Y E
Sbjct: 164 TEAYQE 169
>gnl|CDD|227701 COG5414, COG5414, TATA-binding protein-associated factor
[Transcription].
Length = 392
Score = 31.6 bits (71), Expect = 0.29
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKT 107
E E +E E DKE+++ E E E +++ + +R E EE+ + EN + T
Sbjct: 283 EIENKEVSEGDKEQQQEEVENAEAHKEEVQSDR-PDEIGEEKEEDDENEENERHT 336
Score = 29.7 bits (66), Expect = 1.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
E +EE + D +E E+EE++E E++E +E E
Sbjct: 305 EAHKEEVQSDRPDEIGEEKEEDDENEENERHTELLADELNE 345
Score = 29.3 bits (65), Expect = 1.5
Identities = 17/105 (16%), Positives = 36/105 (34%)
Query: 2 LSWFLIIRSSPEPERTYLSGLPDSEWLALVLIDSPRYLDNSGYDSGIFTYLEEEEEEEEE 61
LS + + E G+ + + + + + E +EE
Sbjct: 252 LSRPALKKEKQGAEEEGEEGMSEEDLDVGAAEIENKEVSEGDKEQQQEEVENAEAHKEEV 311
Query: 62 DDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQK 106
+ + E+EE++E++E E E +E E R++
Sbjct: 312 QSDRPDEIGEEKEEDDENEENERHTELLADELNELEKGIEEKRRQ 356
Score = 28.9 bits (64), Expect = 2.4
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVE 109
E E +EE + EE+EE++++EE ER +E ++ E +++ +E
Sbjct: 302 ENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTELLADELNELEKGIEEKRRQME 358
Score = 27.7 bits (61), Expect = 5.5
Identities = 13/57 (22%), Positives = 28/57 (49%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVE 109
E+++EE E + +E V+ + +E +++EE+ E E + +K +E
Sbjct: 295 EQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTELLADELNELEKGIE 351
Score = 27.0 bits (59), Expect = 8.7
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKT 107
EE E E ++ + E EE+E+D+E E ER E ++ + ++
Sbjct: 299 EEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTELLADELNELEKGIEEK 353
>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P. This model
represents the L12P protein of the large (50S) subunit
of the archaeal ribosome.
Length = 105
Score = 30.0 bits (68), Expect = 0.30
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 4/29 (13%)
Query: 56 EEEEEEDDKEEERVEREEEEEEEDDEEEE 84
E+++EEE EEEEEEE++ EEE
Sbjct: 71 AAAAAEEEEEEE----EEEEEEEEESEEE 95
Score = 29.6 bits (67), Expect = 0.47
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEED 79
EEEEE+++EEE E EEE EEE
Sbjct: 72 AAAAEEEEEEEEEEE--EEEEESEEEA 96
Score = 29.2 bits (66), Expect = 0.62
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 4/28 (14%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDD 80
EEEEEE+++EEE EEEE EE+
Sbjct: 73 AAAEEEEEEEEEEEE----EEEESEEEA 96
Score = 27.7 bits (62), Expect = 2.4
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 70 EREEEEEEEDDEEEERFEREEEEE 93
EEEEE++EEEE E E EEE
Sbjct: 72 AAAAEEEEEEEEEEEEEEEESEEE 95
>gnl|CDD|237046 PRK12297, obgE, GTPase CgtA; Reviewed.
Length = 424
Score = 31.6 bits (73), Expect = 0.30
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 48 IFTYLEEEEEEEEEDDKEEERVEREEEEEEED----DEEEERFE 87
+ LEE E E+++ EE V + EEEE+D +E+ F
Sbjct: 322 VAELLEETPEFPLEEEEVEEEVYYKFEEEEKDFTITRDEDGVFV 365
>gnl|CDD|238919 cd01944, YegV_kinase_like, YegV-like sugar kinase. Found only in
bacteria, YegV-like kinase is part of the
ribokinase/pfkB sugar kinase superfamily. Its
oligomerization state is unknown at this time.
Length = 289
Score = 31.2 bits (71), Expect = 0.30
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 3 SWFLIIRSSPEPERTYLS-----GLPDSEWLALVLIDSPRYLDNSGY 44
L+ P+ ER+++S +EW A + + Y+ SGY
Sbjct: 88 GGCLVALVEPDGERSFISISGAEQDWSTEWFATLTVAPYDYVYLSGY 134
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 31.7 bits (72), Expect = 0.31
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 9/84 (10%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDE---------EEERFEREEEEERRKVTTYSENRQ 105
E+ E + K+E +R E E + E R R + ++K + +
Sbjct: 338 AEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLIDASPNE 397
Query: 106 KTVEICPEAVKIPPSAATILTKWP 129
T E+ PP T P
Sbjct: 398 DTPSENEESKGSPPQVEATTTAEP 421
>gnl|CDD|224969 COG2058, RPP1A, Ribosomal protein L12E/L44/L45/RPP1/RPP2
[Translation, ribosomal structure and biogenesis].
Length = 109
Score = 30.1 bits (68), Expect = 0.34
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEE 82
E E D+ EEE E+EEE EEE D++
Sbjct: 76 GAEAAAEADEAEEE--EKEEEAEEESDDD 102
Score = 28.5 bits (64), Expect = 1.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDD 80
E E ++ +EEE+ E EEE ++D
Sbjct: 76 GAEAAAEADEAEEEEKEEEAEEESDDDM 103
Score = 26.2 bits (58), Expect = 6.7
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 56 EEEEEEDDKEEERVEREEEEEEEDDEEEE 84
+ E E EEEE+EE+ EEE
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEES 99
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 31.2 bits (71), Expect = 0.35
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
EE+E+ + +KEE+ + EE+ ED+ E+ R+ +EE
Sbjct: 67 EEKEKAKREKEEKGLRELEEDTPEDELAEKLRLRKLQEE 105
Score = 30.8 bits (70), Expect = 0.46
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEE 92
EE+E+ + + +E+ E EE+ E++ E+ R + +EE
Sbjct: 67 EEKEKAKREKEEKGLRELEEDTPEDELAEKLRLRKLQEE 105
Score = 26.9 bits (60), Expect = 7.2
Identities = 14/45 (31%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 53 EEEEEEEEEDDKEEERVE-REEEEEEEDDEEEERFEREEEEERRK 96
+EEE+EE+E++K + + + ++ + EE+E+ +RE+EE+ +
Sbjct: 38 DEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLR 82
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 31.5 bits (72), Expect = 0.35
Identities = 12/33 (36%), Positives = 25/33 (75%)
Query: 56 EEEEEEDDKEEERVEREEEEEEEDDEEEERFER 88
E+EE+E KE++R+ + +++EE+ +E E+ E+
Sbjct: 556 EKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 31.2 bits (71), Expect = 0.47
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 12/59 (20%)
Query: 62 DDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEICPEAVKIPPS 120
DDKEE + E+EE+E ++ + + +++EE++++++ E +K KIPP+
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKEL----EKLEKA--------KIPPA 594
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 31.2 bits (71), Expect = 0.37
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 64 KEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
K+ +R ++ ++ EE ++E EREE E R++
Sbjct: 96 KQAQRQKKLQKLLEEKQKQEREKEREEAELRQR 128
>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed.
Length = 106
Score = 29.9 bits (68), Expect = 0.38
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEE 82
EE++E+++EEE E+EE EE+
Sbjct: 74 AAAAEEKKEEEEEEE----EKEESEEEAAA 99
Score = 29.5 bits (67), Expect = 0.41
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 58 EEEEDDKEEERVEREEEEEEEDDEEE 83
EE++ E EEEEE+E+ EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEE 96
Score = 29.5 bits (67), Expect = 0.47
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 59 EEEDDKEEERVEREEEEEEEDDEEEE 84
EE+ E EEEEEE+++ EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEE 96
Score = 28.0 bits (63), Expect = 1.6
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDE 81
EE+++++EEE E +EE EEE
Sbjct: 73 AAAAAEEKKEEEEEE--EEKEESEEEAAA 99
Score = 26.8 bits (60), Expect = 4.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 72 EEEEEEEDDEEEERFEREEEE 92
EE++E++EEEE E EEE
Sbjct: 76 AAEEKKEEEEEEEEKEESEEE 96
Score = 25.7 bits (57), Expect = 9.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 72 EEEEEEEDDEEEERFEREEEEE 93
EE++++EEEE + E EEE
Sbjct: 75 AAAEEKKEEEEEEEEKEESEEE 96
>gnl|CDD|165442 PHA03171, PHA03171, UL37 tegument protein; Provisional.
Length = 499
Score = 31.2 bits (70), Expect = 0.38
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 48 IFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEER 85
E EE EE+D + E + E EEE+E++E E
Sbjct: 75 TAALFAEAGEEAEEEDNDRECPDTEAEEEDEEEEIEAP 112
Score = 29.6 bits (66), Expect = 1.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDE 81
EEE+ + E D E E + EEE E D E
Sbjct: 87 EEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
Score = 29.3 bits (65), Expect = 1.7
Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEICP 112
E E E D EE EE+D + E + E EEE + E E+ P
Sbjct: 64 ENSETERPRDLTAALFAEAGEEAEEEDNDRECPDTEAEEEDEE----EEIEAPDPEVNP 118
>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional.
Length = 1021
Score = 31.2 bits (70), Expect = 0.40
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDE-EEERFEREEEEERR 95
E E EE + E ER+ER E E E + E ER ER+ E R
Sbjct: 461 ERLEREERERLERERMERIERERLERERLERERLERDRLERDR 503
Score = 29.7 bits (66), Expect = 1.3
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 54 EEEEEEEEDDKEEERVEREEEEE-EEDDEEEERFEREEEEERR 95
E++ E + +E ER+ERE E E + E ER ERE E R
Sbjct: 456 EKKRIERLEREERERLERERMERIERERLERERLERERLERDR 498
Score = 29.7 bits (66), Expect = 1.3
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDD----EEEERFEREEEEERRKVTTYSENRQKTVEI 110
E E E + E ER+ER+ E + D E +R ER+ E+ R+ + + K +E
Sbjct: 480 ERERLERERLERERLERDRLERDRLDRLERERVDRLERDRLEKARRNSYF----LKGMEN 535
Query: 111 CPEAVKIPPSAATI 124
A P +
Sbjct: 536 GLSAGGGPGDGPGV 549
Score = 28.5 bits (63), Expect = 3.3
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 52 LEEEEEEEEEDDK----EEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENR 104
LE EE E E ++ E ER+ERE E E + + +R + ER +V +R
Sbjct: 463 LEREERERLERERMERIERERLERERLERERLERDRLERDRLDRLERERVDRLERDR 519
>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional.
Length = 258
Score = 30.9 bits (71), Expect = 0.41
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEE 84
E EE+++E E E EEEEEE ++ E E
Sbjct: 227 GRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 30.5 bits (70), Expect = 0.57
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEE 84
+ E E+++EE E EEEEEEE +E E
Sbjct: 225 RQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEA 257
Score = 27.8 bits (63), Expect = 4.1
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEEERFE 87
+ E ++EEE E EEEEEEE++ EE E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 27.4 bits (62), Expect = 5.4
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 59 EEEDDKEEERVEREEEEEEEDDEEEERFEREEE 91
+ + E E E EEEEE++EEEE E E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 27.4 bits (62), Expect = 6.3
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 64 KEEERVEREEEEEEEDDEEEERFEREEEEE 93
+ E E EEEE EE++EEEE E EE E
Sbjct: 228 RLAEAAEEEEEEAEEEEEEEEEEEAEEAEA 257
Score = 27.1 bits (61), Expect = 7.0
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 61 EDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
+ E E EEE EEE++EEEE E E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 27.1 bits (61), Expect = 7.7
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEE 84
LE + E +EEE EEEEEEE++E EE
Sbjct: 222 LEGRQGRLAEAAEEEEEEAEEEEEEEEEEEAEE 254
>gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing
[Transcription / Chromatin structure and dynamics].
Length = 279
Score = 30.7 bits (69), Expect = 0.44
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
EEEE EE D +EEE E EE + E EEEEE
Sbjct: 177 EEEERLEESDGREEE--EDEEVGSDSYGEGNRELNEEEEEEAEG 218
Score = 30.3 bits (68), Expect = 0.59
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDE----EEERFEREEEEE 93
+ + EEEE +E + E EE+EE D E E EEEE
Sbjct: 172 PDVDNEEEERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEA 216
Score = 30.0 bits (67), Expect = 0.79
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 40 DNSGYDSGIFTYLEEEEEEEEED-------DKEEERVEREEEEEEEDDEEEERFEREEEE 92
+ Y G EEEEEE E D E ER+++++ EEEE +EE E E
Sbjct: 197 GSDSYGEGNRELNEEEEEEAEGSDDGEDVVDYEGERIDKKQGEEEEMEEEVINLFEIEWE 256
Query: 93 ERRKVTTYSENRQKTVEICPE 113
E N +++ +
Sbjct: 257 EESPSEEVPRNNEESPAKKQK 277
Score = 28.8 bits (64), Expect = 1.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 56 EEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
+ +E++D+ + EEEE EE + E EE+EE
Sbjct: 158 WDNDEDNDEAPPAQPDVDNEEEERLEESDGREEEEDEE 195
Score = 28.8 bits (64), Expect = 2.2
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
LEE + EEE+D+E E E ++EEEE E ++ E
Sbjct: 182 LEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEGSDDGE 223
Score = 27.3 bits (60), Expect = 5.8
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEE 92
+ +E+ D+ + + + EEEE +E + R E E+EE
Sbjct: 158 WDNDEDNDEAPPAQPDVDNEEEERLEESDGREEEEDEE 195
>gnl|CDD|205480 pfam13300, DUF4078, Domain of unknown function (DUF4078). This
family is found from fungi to humans, but its exact
function is not known.
Length = 88
Score = 29.2 bits (66), Expect = 0.45
Identities = 17/45 (37%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKV 97
+EEE +E+ ++ E+ R E E E +E ++ +E+R +R EE R+K+
Sbjct: 41 DEEERKEQMEELEKAREETERERKEREERKEKR-KRAIEERRKKI 84
Score = 28.0 bits (63), Expect = 1.4
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERR 95
+ EE E+ ++ E ER EREE +E+ EER R++ EERR
Sbjct: 48 QMEELEKAREETERERKEREERKEKRKRAIEER--RKKIEERR 88
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 30.9 bits (70), Expect = 0.46
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 9/48 (18%)
Query: 53 EEEEEEEEEDDK---------EEERVEREEEEEEEDDEEEERFEREEE 91
+EEEEEEEED+ E E R ++E+ +D+EE+
Sbjct: 182 KEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDNDNTPSP 229
Score = 29.7 bits (67), Expect = 0.98
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDD-----EEEERFEREEEEE 93
E ++ D+++EERVE+E EEE D E + E E
Sbjct: 107 NYEADKLDEEQEERVEKEREEELAGDAMKKLENRTADSKREMEV 150
Score = 28.6 bits (64), Expect = 2.6
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 71 REEEEEEEDDEEEERFEREEEEE 93
R E ++ D+E+EER E+E EEE
Sbjct: 106 RNYEADKLDEEQEERVEKEREEE 128
Score = 28.2 bits (63), Expect = 3.8
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 61 EDDKEEERVEREEEEEEEDDEEEE-RFEREEEEERRKV----TTYSENRQKTVEICPEAV 115
E E+ E EEEEEE++ + F E EE+RR+ + E
Sbjct: 174 EALFRREKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDNDNTPSPKSGS 233
Query: 116 KIPPSAATILTK 127
P +IL K
Sbjct: 234 SSPAKPTSILKK 245
>gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1. All
proteins in this family for which functions are known
are cyclin dependent protein kinases that are components
of TFIIH, a complex that is involved in nucleotide
excision repair and transcription initiation. Also known
as MAT1 (menage a trois 1). This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 309
Score = 30.9 bits (70), Expect = 0.49
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQK 106
++E ++ K +E+ RE+EE EE E FE+EEEE+RR + E Q+
Sbjct: 126 QKENKDVIQKNKEKSTREQEELEEALE----FEKEEEEQRRLLLQKEEEEQQ 173
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 31.0 bits (70), Expect = 0.51
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEEERFER-EEEEERRKVTTYSENRQK 106
EEE EE++ ++ +R+++ E+E+ED+E E E EEEE + +++
Sbjct: 284 EEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKE 336
Score = 31.0 bits (70), Expect = 0.52
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
+E+E+E+E ER + EEE EE++ E+ +R ++ E+E
Sbjct: 266 DEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDE 305
Score = 29.4 bits (66), Expect = 1.4
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 52 LEEEEEEEEEDDKEEERVER-EEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKT 107
L++ E+E+ED++ E E EEEE E+ E ++EEE+E V+ R+
Sbjct: 298 LKKMMEDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEEEKEEVTVSPDGGRRRGR 354
>gnl|CDD|148679 pfam07218, RAP1, Rhoptry-associated protein 1 (RAP-1). This family
consists of several rhoptry-associated protein 1 (RAP-1)
sequences which appear to be specific to Plasmodium
falciparum.
Length = 790
Score = 31.2 bits (70), Expect = 0.52
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 49 FTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSE 102
F EE EE EE+ + E++ E +EE+ +EE +F + ++R +SE
Sbjct: 246 FELDEEHEEAEEDKKEALEKIGAEGDEEKFKFDEEIKFIEHDVKDRNIAGGFSE 299
>gnl|CDD|215094 PLN00188, PLN00188, enhanced disease resistance protein (EDR2);
Provisional.
Length = 719
Score = 30.9 bits (70), Expect = 0.52
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 58 EEEEDDKEEERVEREEEEEEEDDEEEERFEREEE 91
+E+ DD EE ++ E+E E E + EEE
Sbjct: 442 DEDSDDDEEFQIPESEQEPETTKNETKDTAMEEE 475
>gnl|CDD|151173 pfam10669, Phage_Gp23, Protein gp23 (Bacteriophage A118). This is
the highly conserved family of the major tail subunit
protein.
Length = 121
Score = 29.7 bits (66), Expect = 0.54
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 62 DDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQ 105
DD + RVE +EE ++ + E E+R + +EE + ++T +E ++
Sbjct: 39 DDSKIVRVEMKEERDKMETEREKRDKESKEERDKFISTMNEQQR 82
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 30.8 bits (70), Expect = 0.56
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 50 TYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEE-----ERRKVTTYSENR 104
+E E EE + + EEE +D+ E FE E E ++ T N+
Sbjct: 228 APEASRLDEMSEGLLEES--DDDGEEESDDESAWEGFESEYEPINKPVRPKRKTKAQRNK 285
Query: 105 QK 106
+K
Sbjct: 286 EK 287
Score = 27.4 bits (61), Expect = 7.5
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 66 EERVEREEEEEEEDDEEEERFEREEEEERR 95
E+ V+ E++ +E + EE++ E+ E R
Sbjct: 204 EKEVKAEKKRQELERVEEKKLEKMAPEASR 233
>gnl|CDD|75628 PRK06548, PRK06548, ribonuclease H; Provisional.
Length = 161
Score = 30.2 bits (67), Expect = 0.57
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 144 DVQFVWVPSHVGIAGNEEADRLAKEALTSAHPSVNQIPIPNYKTYSKK 191
+++ WV +H G NE AD LA++A + IP P + S K
Sbjct: 114 NIRMSWVNAHTGHPLNEAADSLARQAANNFSTRSAHIPGPGWTERSAK 161
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit.
Transcription initiation factor IIA (TFIIA) is a
heterotrimer, the three subunits being known as alpha,
beta, and gamma, in order of molecular weight. The N and
C-terminal domains of the gamma subunit are represented
in pfam02268 and pfam02751, respectively. This family
represents the precursor that yields both the alpha and
beta subunits. The TFIIA heterotrimer is an essential
general transcription initiation factor for the
expression of genes transcribed by RNA polymerase II.
Together with TFIID, TFIIA binds to the promoter region;
this is the first step in the formation of a
pre-initiation complex (PIC). Binding of the rest of the
transcription machinery follows this step. After
initiation, the PIC does not completely dissociate from
the promoter. Some components, including TFIIA, remain
attached and re-initiate a subsequent round of
transcription.
Length = 332
Score = 30.5 bits (69), Expect = 0.57
Identities = 8/41 (19%), Positives = 19/41 (46%)
Query: 41 NSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDE 81
+S + ++E+ E + D ++ V E+ E+ D +
Sbjct: 248 DSDDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTD 288
Score = 27.8 bits (62), Expect = 4.9
Identities = 6/31 (19%), Positives = 19/31 (61%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEE 83
+ +++++ED E + + +++ +ED E+
Sbjct: 254 DGSDDDDDEDAIESDLDDSDDDVSDEDGEDL 284
Score = 27.0 bits (60), Expect = 9.1
Identities = 5/34 (14%), Positives = 17/34 (50%)
Query: 60 EEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
+++ + + E+ E + D+ ++ E+ E+
Sbjct: 250 DDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGED 283
>gnl|CDD|111875 pfam03032, Brevenin, Brevenin/esculentin/gaegurin/rugosin family.
This family contains a number of defence peptides
secreted from the skin of amphibians, including the
opiate-like dermorphins and deltorphins, and the
antimicrobial dermoseptins and temporins. The alignment
for this family includes the signal peptide.
Length = 46
Score = 28.1 bits (63), Expect = 0.58
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 70 EREEEEEEEDDEEEERFEREEEEER 94
E E+ E+EE++E+EE E + E +R
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVKR 46
Score = 26.9 bits (60), Expect = 1.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 61 EDDKEEERVEREEEEEEEDDEEEER 85
E++K E+ E E+EEE E+ E +R
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVKR 46
Score = 25.4 bits (56), Expect = 4.8
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 72 EEEEEEEDDEEEERFEREEEEERRK 96
EEE+ E+++E E+ E EE+ E ++
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVKR 46
>gnl|CDD|218771 pfam05835, Synaphin, Synaphin protein. This family consists of
several eukaryotic synaphin 1 and 2 proteins.
Synaphin/complexin is a cytosolic protein that
preferentially binds to syntaxin within the SNARE
complex. Synaphin promotes SNAREs to form precomplexes
that oligomerise into higher order structures. A
peptide from the central, syntaxin binding domain of
synaphin competitively inhibits these two proteins from
interacting and prevents SNARE complexes from
oligomerising. It is thought that oligomerisation of
SNARE complexes into a higher order structure creates a
SNARE scaffold for efficient, regulated fusion of
synaptic vesicles. Synaphin promotes neuronal
exocytosis by promoting interaction between the
complementary syntaxin and synaptobrevin transmembrane
regions that reside in opposing membranes prior to
fusion.
Length = 139
Score = 29.9 bits (67), Expect = 0.59
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEE 92
L +E+E +E D EEE E +E E ++E + + + EEE
Sbjct: 20 LGGKEDEGDESDAEEEDEEIQEALREAEEERKAKHRKMEEE 60
Score = 27.5 bits (61), Expect = 3.5
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEER 94
E+E +E + ++++EE E E EEE + + E E E R
Sbjct: 24 EDEGDESDAEEEDEEIQEALREAEEERKAKHRKMEEEREVMR 65
>gnl|CDD|235548 PRK05657, PRK05657, RNA polymerase sigma factor RpoS; Validated.
Length = 325
Score = 30.7 bits (70), Expect = 0.61
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEE 92
E+ + +E + +E+ EEE + D EEE + +
Sbjct: 9 NEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQ 49
Score = 29.9 bits (68), Expect = 1.1
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEER 94
L E+ + +E + + EEE ++D EE + +R
Sbjct: 8 LNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQR 50
Score = 29.2 bits (66), Expect = 1.5
Identities = 7/47 (14%), Positives = 17/47 (36%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTT 99
+ E+ + D+ E + + EEE + + E + +
Sbjct: 6 HDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVL 52
Score = 28.4 bits (64), Expect = 2.6
Identities = 8/47 (17%), Positives = 17/47 (36%)
Query: 50 TYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
L+ + E+ D E +E+ E++ + EE +
Sbjct: 1 MTLKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGA 47
Score = 28.4 bits (64), Expect = 3.0
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTT 99
+ + E+ D +E VE +E+ ++E + EEE + T
Sbjct: 3 LKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQ 49
>gnl|CDD|236334 PRK08719, PRK08719, ribonuclease H; Reviewed.
Length = 147
Score = 29.8 bits (67), Expect = 0.64
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 145 VQFVWVPSHVGIAGNEEADRLAKEA 169
V+ V +H GI GNE AD LA+ A
Sbjct: 120 VEVEKVTAHSGIEGNEAADMLAQAA 144
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 30.8 bits (70), Expect = 0.64
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
L+E+ EE +EE E +E + + FERE+EE R+K
Sbjct: 194 LKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKK 238
>gnl|CDD|184539 PRK14150, PRK14150, heat shock protein GrpE; Provisional.
Length = 193
Score = 29.9 bits (68), Expect = 0.67
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
+E+ E+ + E + E +E E +DE +E R E E
Sbjct: 9 PQEQVSEEIEAEVEQQEEADEAELEDELDEADARIAELE 47
>gnl|CDD|221668 pfam12619, MCM2_N, Mini-chromosome maintenance protein 2. This
domain family is found in eukaryotes, and is typically
between 138 and 153 amino acids in length. The family
is found in association with pfam00493. Mini-chromosome
maintenance (MCM) proteins are essential for DNA
replication. These proteins use ATPase activity to
perform this function.
Length = 145
Score = 29.6 bits (67), Expect = 0.67
Identities = 14/38 (36%), Positives = 26/38 (68%), Gaps = 3/38 (7%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEE---ERFERE 89
E+E +EE++ E++ + +EE EEE+D E+ + ER+
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDGEDLFGDNMERD 38
Score = 27.7 bits (62), Expect = 3.7
Identities = 12/41 (29%), Positives = 26/41 (63%)
Query: 56 EEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
E+E +E+++ E+ ++ +EE EE+++ E+ F E + R
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDGEDLFGDNMERDYRA 41
>gnl|CDD|218303 pfam04874, Mak16, Mak16 protein C-terminal region. The precise
function of this eukaryotic protein family is unknown.
The yeast orthologues have been implicated in cell
cycle progression and biogenesis of 60S ribosomal
subunits. The Schistosoma mansoni Mak16 has been shown
to target protein transport to the nucleolus.
Length = 97
Score = 29.1 bits (65), Expect = 0.69
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFE 87
E +EEEEEE+++E+E ++EE +EE E E
Sbjct: 62 ENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
Score = 28.7 bits (64), Expect = 0.87
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEE 92
EE EE +E+++EEE E E E E D+EE E E+ E
Sbjct: 58 EESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
Score = 27.5 bits (61), Expect = 2.1
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
LE EE EE ++++EEE E +E E E ++EE E E+ E
Sbjct: 55 LEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
>gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family. The organisation of
microtubules varies with the cell type and is presumably
controlled by tissue-specific microtubule-associated
proteins (MAPs). The 115-kDa epithelial MAP
(E-MAP-115/MAP7) has been identified as a
microtubule-stabilising protein predominantly expressed
in cell lines of epithelial origin. The binding of this
microtubule associated protein is nucleotide
independent.
Length = 171
Score = 29.7 bits (66), Expect = 0.72
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQK 106
E+ E+EE++ +E+E +R E EE + EER REEE R++ E +K
Sbjct: 37 EQREQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEK 89
>gnl|CDD|218258 pfam04774, HABP4_PAI-RBP1, Hyaluronan / mRNA binding family. This
family includes the HABP4 family of hyaluronan-binding
proteins, and the PAI-1 mRNA-binding protein, PAI-RBP1.
HABP4 has been observed to bind hyaluronan (a
glucosaminoglycan), but it is not known whether this is
its primary role in vivo. It has also been observed to
bind RNA, but with a lower affinity than that for
hyaluronan. PAI-1 mRNA-binding protein specifically
binds the mRNA of type-1 plasminogen activator inhibitor
(PAI-1), and is thought to be involved in regulation of
mRNA stability. However, in both cases, the sequence
motifs predicted to be important for ligand binding are
not conserved throughout the family, so it is not known
whether members of this family share a common function.
Length = 106
Score = 28.9 bits (65), Expect = 0.72
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERF--EREEEEERRKVTTYSE 102
+E E EE +EEE+ E EE++ E++ +E E E EEE K T E
Sbjct: 32 DEIAELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDKEMTLEE 83
Score = 26.6 bits (59), Expect = 4.7
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDE 81
EE++ EE+ +E VE EE EEEED E
Sbjct: 49 EVEEKQAVEEEANKEGVVEEEEVEEEEDKE 78
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 29.9 bits (68), Expect = 0.74
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 52 LEEEEEE------EEEDDKEEERVEREEEEEEEDDEEE-ERFEREEEEERRKVTTYSENR 104
L++E EE E + E+ + REE EE + EE ++ E+E ++ + ++ Y +N
Sbjct: 74 LKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKKLKAELEKYEKND 133
Query: 105 QKTVEICPEAVKIPPSAATILTKWPDDI 132
+ +E E K+ AA +W D+I
Sbjct: 134 PERIEKLKEETKVAKEAA---NRWTDNI 158
Score = 26.8 bits (60), Expect = 8.0
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 56 EEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
+ E+ KE E +++ E + E+ ++ REE EER +
Sbjct: 68 KTRLEKLKKELEELKQRIAELQAQIEKLKK-GREETEERTE 107
>gnl|CDD|185618 PTZ00438, PTZ00438, gamete antigen 27/25-like protein; Provisional.
Length = 374
Score = 30.4 bits (68), Expect = 0.74
Identities = 19/44 (43%), Positives = 30/44 (68%)
Query: 50 TYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
T EEEE+E+ E+ +E E VE EEE ++D++ E+ E+E + E
Sbjct: 105 TQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAE 148
Score = 28.5 bits (63), Expect = 3.2
Identities = 21/57 (36%), Positives = 26/57 (45%)
Query: 47 GIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSEN 103
I E E EEE DD E+ + E+E + E DE E E EE V +EN
Sbjct: 117 EIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDENELAGEYIIEEVDDDVAILNEN 173
Score = 26.9 bits (59), Expect = 9.6
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
EEE +++++E+E VE EE EE + EEE + E+ E+
Sbjct: 100 EEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEK 139
>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute
binding domain. Human SGLT1 (hSGLT1) is a
high-affinity/low-capacity glucose transporter, which
can also transport galactose. In the transport
mechanism, two Na+ ions first bind to the extracellular
side of the transporter and induce a conformational
change in the glucose binding site. This results in an
increased affinity for glucose. A second conformational
change in the transporter follows, bringing the Na+ and
glucose binding sites to the inner surface of the
membrane. Glucose is then released, followed by the Na+
ions. In the process, hSGLT1 is also able to transport
water and urea and may be a major pathway for transport
of these across the intestinal brush-border membrane.
hSGLT1 is encoded by the SLC5A1 gene and expressed
mostly in the intestine, but also in the trachea,
kidney, heart, brain, testis, and prostate. The
WHO/UNICEF oral rehydration solution (ORS) for the
treatment of secretory diarrhea contains salt and
glucose. The glucose, along with sodium ions, is
transported by hSGLT1 and water is either co-transported
along with these or follows by osmosis. Mutations in
SGLT1 are associated with intestinal glucose galactose
malabsorption (GGM). Up-regulation of intestinal SGLT1
may protect against enteric infections. SGLT1 is
expressed in colorectal, head and neck, and prostate
tumors. Epidermal growth factor receptor (EGFR)
functions in cell survival by stabilizing SGLT1, and
thereby maintaining intracellular glucose levels. SGLT1
is predicted to have 14 membrane-spanning regions. This
subgroup belongs to the solute carrier 5
(SLC5)transporter family.
Length = 635
Score = 30.6 bits (69), Expect = 0.76
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 63 DKEEERVEREEEEEEEDDEEEERFEREEEEE 93
+ EER++ + ++ ED++E E EE ++
Sbjct: 539 NSTEERIDLDADDWTEDEDENEMETDEERKK 569
Score = 29.1 bits (65), Expect = 2.2
Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 21/72 (29%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEE--------------------RFEREEE 91
L EE + D ++ + +E E E D+E ++ + EEE
Sbjct: 537 LRNSTEERIDLDADDWTEDEDENEMETDEERKKPGCCRKAYNWFCGFDQGKAPKLTEEEE 596
Query: 92 EE-RRKVTTYSE 102
+ K+T SE
Sbjct: 597 AALKMKMTDTSE 608
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 30.5 bits (69), Expect = 0.78
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
+EE EE E EE E EE +++ EE+ EE E
Sbjct: 335 LKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELF 378
Score = 29.7 bits (67), Expect = 1.4
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 42 SGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEE-EEEDDEEEERFEREEEEERRKVTTY 100
+ EE E+ + EE E EE+ +E EE FE EE
Sbjct: 333 EALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAEL 392
Query: 101 SENRQKTVEI 110
+E R + E+
Sbjct: 393 AEIRNELEEL 402
Score = 28.9 bits (65), Expect = 2.5
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 51 YLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
E EE +E+ + +E +E E EE ++ E +EE K
Sbjct: 321 LEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEK 366
Score = 28.1 bits (63), Expect = 4.3
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVE 109
EE EE +EE ++ E+ +E + E EE EE E + E E + ++ E
Sbjct: 253 EELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRE 309
Score = 27.4 bits (61), Expect = 7.3
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
E EE EE ++ +E+ +EE EE + EE + E E K
Sbjct: 317 ELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAK 360
Score = 27.4 bits (61), Expect = 7.4
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVE 109
+E EE +EE ++ E E E+E +E +EE+E E E E ++ E +K E
Sbjct: 856 KELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRE 912
Score = 27.4 bits (61), Expect = 8.2
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 51 YLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERR 95
LEE +E+ E +E E E EE E+ E E + E EE+
Sbjct: 324 RLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLS 368
Score = 27.4 bits (61), Expect = 8.5
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
EE +E+ + +EE ERE EE + E E +EE E +
Sbjct: 324 RLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKL 367
Score = 27.4 bits (61), Expect = 8.6
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
EE E E ++ EE E +E+ E +E EER EE E+
Sbjct: 310 RLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLL 353
Score = 27.4 bits (61), Expect = 9.0
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKT 107
EE EE EEE ++ +ER+E EEE E +E + + E EE K E ++
Sbjct: 744 EELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEEL 798
Score = 27.0 bits (60), Expect = 10.0
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEI 110
E E ++ EE EE EE +E +E+ E +EE + T E Q E+
Sbjct: 301 EGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAEL 356
>gnl|CDD|221244 pfam11818, DUF3340, C-terminal domain of tail specific protease
(DUF3340). This presumed domain is found at the
C-terminus of tail specific proteases. Its function is
unknown. This family is found in bacteria and
eukaryotes. This presumed domain is typically between 88
to 187 amino acids in length.
Length = 139
Score = 29.5 bits (67), Expect = 0.78
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 49 FTYLEEEEEE--EEEDDK-----EEERV-EREEEEEEEDDEEEERFEREEEEE 93
F YL E+ EE DDK E ER EREE+E++ E ER + EE
Sbjct: 54 FQYLNEDIAWLKEERDDKTVSLNEAERKAEREEDEKKRLKRENERRKALGEEP 106
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 30.6 bits (69), Expect = 0.79
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQK 106
LEE+ E E+ KEE ERE + EE+ EEE+ E + + K + R+K
Sbjct: 251 LEEKRRELEKLAKEE--AERERQAEEQRRREEEKAAMEADRAQAKAEV-EKRREK 302
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 30.5 bits (70), Expect = 0.80
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 46 SGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEE 84
+F ++ EEE ++ E +E EE+E+ E+ E
Sbjct: 504 EPLFPRIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
>gnl|CDD|216249 pfam01025, GrpE, GrpE.
Length = 165
Score = 29.5 bits (67), Expect = 0.82
Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEE 92
EE+EEEEE +D+EE E EE EEE +E ++R R E
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELKDRLLRLLAE 40
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 29.9 bits (68), Expect = 0.85
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREE--------EEERRKV 97
E E + E + E+E + +++EEE+ E +ER +E E ER K+
Sbjct: 207 EAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKL 259
>gnl|CDD|235302 PRK04456, PRK04456, acetyl-CoA decarbonylase/synthase complex
subunit beta; Reviewed.
Length = 463
Score = 30.0 bits (68), Expect = 0.86
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 63 DKEEERVEREEEEEEEDDEEEERFEREEEEE 93
+KE VER EEEE++EEEE E E E
Sbjct: 393 EKEHPVVERWAAEEEEEEEEEEEEEEEPVAE 423
Score = 27.0 bits (60), Expect = 9.9
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 67 ERVEREEEEEEEDDEEEERFEREEEE 92
ER EEEEEEE++EEEE E
Sbjct: 400 ERWAAEEEEEEEEEEEEEEEPVAEVM 425
>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 193
Score = 29.6 bits (67), Expect = 0.88
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEER 94
++E++ EE D +E E E+ EEEE E++E EE E EEE++
Sbjct: 3 DKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQE 44
Score = 28.4 bits (64), Expect = 2.2
Identities = 20/47 (42%), Positives = 27/47 (57%)
Query: 50 TYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
E + EE EE +K EE EEE EEE++ EEE+ E E E + +
Sbjct: 7 KTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLE 53
>gnl|CDD|217450 pfam03247, Prothymosin, Prothymosin/parathymosin family.
Prothymosin alpha and parathymosin are two ubiquitous
small acidic nuclear proteins that are thought to be
involved in cell cycle progression, proliferation, and
cell differentiation.
Length = 106
Score = 28.8 bits (64), Expect = 0.89
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
E EEEEE ++D EEE E EEEE EE++E E + E+
Sbjct: 50 EMEEEEEVDEDDEEEEGEGEEEEGEEEEETEGATGKRAAED 90
Score = 27.6 bits (61), Expect = 2.3
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
EE +E DD+ EE E +E++EEE+ E EE EEEE
Sbjct: 39 NEENGAQEGDDEMEEEEEVDEDDEEEEGEGEEEEGEEEEET 79
Score = 27.2 bits (60), Expect = 3.5
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
E EE +E D E E E +E++EE++ E E E EEEEE
Sbjct: 38 ENEENGAQEGDDEMEEEEEVDEDDEEEEGEGEEEEGEEEEE 78
Score = 26.8 bits (59), Expect = 3.9
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
EE +E +D+ EEE E++EEEE + EEE E EEE E
Sbjct: 40 EENGAQEGDDEMEEEEEVDEDDEEEEGEGEEEEGEEEEETE 80
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and
214 amino acids in length.
Length = 125
Score = 29.1 bits (66), Expect = 0.89
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
+++EE++ E +K + E+ E E + E+E E E E RR+
Sbjct: 26 KKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRE 69
Score = 28.0 bits (63), Expect = 1.8
Identities = 13/62 (20%), Positives = 28/62 (45%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEICP 112
E+ + E+++++K+ E + + EE E E +E EE E + + ++
Sbjct: 20 EKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKAEAKKMLS 79
Query: 113 EA 114
E
Sbjct: 80 EK 81
Score = 26.1 bits (58), Expect = 8.3
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 51 YLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKV 97
E E+ + +E+ E E+ E+E ++ E E RE + E +K+
Sbjct: 31 KKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKAEAKKM 77
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 30.3 bits (68), Expect = 0.91
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 40 DNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
D S D I E + E E E+ + E++EE+ EEEE E +E E+
Sbjct: 124 DESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQAT 180
Score = 29.6 bits (66), Expect = 1.6
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
EEEE+E ED+ ++ E + E E E+ + E++E +K
Sbjct: 120 EEEEDESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKK 163
Score = 28.0 bits (62), Expect = 4.0
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVE 109
EEE+E E++ ++E E E E+ E E++EE++ + +++VE
Sbjct: 121 EEEDESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVE 177
Score = 27.6 bits (61), Expect = 6.4
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
E E E+ D E E E ++ EEEE EE+E E+ E++
Sbjct: 143 ESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQATREKKFD 186
Score = 27.6 bits (61), Expect = 6.5
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
E E +D ++ E +EE++ E++E E E E+ R K
Sbjct: 140 LFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQATREK 183
Score = 27.3 bits (60), Expect = 8.5
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 34 DSPRYLDNSGYDSGIFT------YLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFE 87
+ D SG D F +LE E EEE +E+ E +++ ED +++E F
Sbjct: 180 TREKKFDKSGVDDKFFKLDEMNEFLEATEAEEEAALGDEDDFEDYFQDDSEDGKDDEDFG 239
Query: 88 REEEEE 93
E+EE
Sbjct: 240 SGEDEE 245
>gnl|CDD|220605 pfam10156, Med17, Subunit 17 of Mediator complex. This Mediator
complex subunit was formerly known as Srb4 in yeasts or
Trap80 in Drosophila and human. The Med17 subunit is
located within the head domain and is essential for
cell viability to the extent that a mutant strain of
cerevisiae lacking it shows all RNA polymerase
II-dependent transcription ceasing at non-permissive
temperatures.
Length = 454
Score = 30.0 bits (68), Expect = 0.92
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 47 GIFTYLEE----EEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
G F L E EE +E + EEE++EEDD ++ ++ EE K
Sbjct: 44 GSFRDLTEESLREEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEEFPK 97
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 29.3 bits (66), Expect = 0.92
Identities = 12/38 (31%), Positives = 25/38 (65%)
Query: 48 IFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEER 85
I + EE E+E++E KE E E + ++E+ +++E++
Sbjct: 88 INLFPEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 30.2 bits (68), Expect = 0.93
Identities = 10/44 (22%), Positives = 23/44 (52%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
E+ ++ E+ K+ E +++ EE + E + + E E E++
Sbjct: 101 EKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKA 144
Score = 27.9 bits (62), Expect = 3.9
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 52 LEEEEEEEEEDDKE-EERVEREEE--EEEEDDEEEERFEREEEEERRK 96
E++ E+ KE E+R E+ + E+ ++ E +++ EE + K
Sbjct: 80 AEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAK 127
Score = 27.9 bits (62), Expect = 4.4
Identities = 8/44 (18%), Positives = 21/44 (47%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
E+ ++ E ++ ++++ EE + + E + E E +K
Sbjct: 100 AEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKK 143
>gnl|CDD|203444 pfam06424, PRP1_N, PRP1 splicing factor, N-terminal. This domain
is specific to the N-terminal part of the prp1 splicing
factor, which is involved in mRNA splicing (and
possibly also poly(A)+ RNA nuclear export and cell
cycle progression). This domain is specific to the N
terminus of the RNA splicing factor encoded by prp1. It
is involved in mRNA splicing and possibly also
poly(A)and RNA nuclear export and cell cycle
progression.
Length = 131
Score = 29.2 bits (66), Expect = 0.93
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 41 NSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERR 95
G + G+F+ + ++E+EE D E ER +E ++ E++E+ E E+ E
Sbjct: 43 QDGDNEGLFSDGKYDDEDEEADRIYESIDERMDERRKKRREQKEKEEIEKYREEN 97
Score = 26.5 bits (59), Expect = 7.6
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 12/69 (17%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFE------------REEEEERRKVTTY 100
EE+E+ + D + E + + + ++ED+E + +E R E++E+ ++ Y
Sbjct: 34 EEDEDPKRYQDGDNEGLFSDGKYDDEDEEADRIYESIDERMDERRKKRREQKEKEEIEKY 93
Query: 101 SENRQKTVE 109
E K +
Sbjct: 94 REENPKIQQ 102
>gnl|CDD|153365 cd07681, F-BAR_PACSIN3, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Protein kinase C and
Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR
domains are dimerization modules that bind and bend
membranes and are found in proteins involved in membrane
dynamics and actin reorganization. Protein kinase C and
Casein kinase Substrate in Neurons (PACSIN) proteins,
also called Synaptic dynamin-associated proteins
(Syndapins), act as regulators of cytoskeletal and
membrane dynamics. Vetebrates harbor three isoforms with
distinct expression patterns and specific functions.
PACSIN 3 or Syndapin III is expressed ubiquitously and
regulates glucose uptake in adipocytes through its role
in GLUT1 trafficking. It also modulates the subcellular
localization and stimulus-specific function of the
cation channel TRPV4. PACSIN 3 contains an N-terminal
F-BAR domain and a C-terminal SH3 domain. F-BAR domains
form banana-shaped dimers with a positively-charged
concave surface that binds to negatively-charged lipid
membranes. They can induce membrane deformation in the
form of long tubules.
Length = 258
Score = 29.9 bits (67), Expect = 0.97
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 59 EEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEICPEAVK 116
+E+ K ++RVE+ +E E+ +E++E+ EE R Y E+ ++ EIC EA +
Sbjct: 167 QEQLRKLQDRVEKCTQEAEKA---KEQYEKALEELNRYNPRYMEDMEQAFEICQEAER 221
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 29.7 bits (67), Expect = 0.98
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEE 92
EEE++ E +DDK EE + EE D +E +
Sbjct: 78 EEEKKPESDDDKTEENENDPDNNEESGDSQESASANSLSD 117
Score = 26.6 bits (59), Expect = 8.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEE 91
++E+ EE+ K E ++ EE E + D EE + +E
Sbjct: 72 DKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQES 109
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the monomeric yeast and human topo I
and heterodimeric topo I from Leishmania donvanni. Topo
I enzymes are divided into: topo type IA (bacterial)
and type IB (eukaryotic). Topo I relaxes superhelical
tension in duplex DNA by creating a single-strand nick,
the broken strand can then rotate around the unbroken
strand to remove DNA supercoils and, the nick is
religated, liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit re-ligation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I play putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 215
Score = 29.5 bits (67), Expect = 0.99
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 48 IFTYLEEEEEEEEEDDKEEERVEREEEEEEE 78
I+ Y EEE+E+++ KEE++ +EE+E+ E
Sbjct: 90 IYQYFEEEKEKKKAMSKEEKKAIKEEKEKLE 120
>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D. This
model represents one of two ATPase subunits of the
trimeric magnesium chelatase responsible for insertion
of magnesium ion into protoporphyrin IX. This is an
essential step in the biosynthesis of both chlorophyll
and bacteriochlorophyll. This subunit is found in green
plants, photosynthetic algae, cyanobacteria and other
photosynthetic bacteria. Unlike subunit I (TIGR02030),
this subunit is not found in archaea [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 589
Score = 30.2 bits (68), Expect = 1.0
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 50 TYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEE 91
T L E E + E E EEE +E D + + E ++
Sbjct: 264 TRLPEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQ 305
Score = 28.6 bits (64), Expect = 2.6
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREE 90
E E EE+ E ++ + ++ EE + EE F+ E
Sbjct: 280 PEPPEPEEEPDEPDQTDPDDGEETDQIPEELMFDAVE 316
>gnl|CDD|237875 PRK14974, PRK14974, cell division protein FtsY; Provisional.
Length = 336
Score = 29.9 bits (68), Expect = 1.0
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 46 SGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFER 88
S +EE+ EEEEE++ E E EEE+EEE E+ F++
Sbjct: 10 SKFVEKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDK 52
Score = 26.9 bits (60), Expect = 9.9
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 59 EEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSE 102
EE+ ++EEE E EEEEE+++EEE+ E+ ++ K+T E
Sbjct: 17 EEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKE 60
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein. This
family includes archaebacterial L12, eukaryotic P0, P1
and P2.
Length = 88
Score = 28.4 bits (64), Expect = 1.0
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 59 EEEDDKEEERVEREEEEEEEDD 80
EEE+ E EEEEEE+DD
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDDD 82
Score = 25.7 bits (57), Expect = 8.6
Identities = 10/11 (90%), Positives = 11/11 (100%)
Query: 53 EEEEEEEEEDD 63
EEEEEEEE+DD
Sbjct: 72 EEEEEEEEDDD 82
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin.
Trichoplein or mitostatin, was first defined as a
meiosis-specific nuclear structural protein. It has
since been linked with mitochondrial movement. It is
associated with the mitochondrial outer membrane, and
over-expression leads to reduction in mitochondrial
motility whereas lack of it enhances mitochondrial
movement. The activity appears to be mediated through
binding the mitochondria to the actin intermediate
filaments (IFs).
Length = 349
Score = 29.9 bits (68), Expect = 1.0
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKV 97
+ EE+EE+ + +E +E E + ++EE ER +EE E R V
Sbjct: 33 KAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERREGRAV 75
Score = 28.3 bits (64), Expect = 2.9
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 58 EEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSEN 103
EE+E+ + ER E EE E +EE ER R EEE +R + ++E
Sbjct: 298 EEKEERRAAEREEELEEGERLREEEAERQARIEEERQRLLKEHAEA 343
Score = 28.3 bits (64), Expect = 3.0
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 17/79 (21%)
Query: 48 IFTYLEEEEEEEEEDDKEEERVEREEEE---------EEEDDEEEER--------FEREE 90
I Y E+ E EEE + E + E+E EE +DE EE E E
Sbjct: 155 ILEYQREKAEREEEREAERRERKEEKEREVARLRAQQEEAEDEREELDELRADLYQEEYE 214
Query: 91 EEERRKVTTYSENRQKTVE 109
+ER+K +E R++ +
Sbjct: 215 RKERQKEKEEAEKRRRQKQ 233
Score = 28.3 bits (64), Expect = 3.5
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKV 97
EE+E E EE+ K E + E EEE + E + E+E E ++
Sbjct: 143 EEKEREREEELKILEYQREKAEREEEREAERRERKEEKEREVARL 187
Score = 27.6 bits (62), Expect = 5.0
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVT 98
+EE++ + E+ +EE R++ EEE EE + +E R+
Sbjct: 26 IEEKKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERREG 72
Score = 27.6 bits (62), Expect = 5.4
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDD-----EEEERFEREEEEERRK 96
L+ EE+ E+ +E + ER EEE E + E+E E+E E+RR
Sbjct: 235 LQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQENAEKRRM 284
>gnl|CDD|100110 cd05832, Ribosomal_L12p, Ribosomal protein L12p. This subfamily
includes archaeal L12p, the protein that is
functionally equivalent to L7/L12 in bacteria and the
P1 and P2 proteins in eukaryotes. L12p is homologous to
P1 and P2 but is not homologous to bacterial L7/L12. It
is located in the L12 stalk, with proteins L10, L11,
and 23S rRNA. L12p is the only protein in the ribosome
to occur as multimers, always appearing as sets of
dimers. Recent data indicate that most archaeal species
contain six copies of L12p (three homodimers), while
eukaryotes have four copies (two heterodimers), and
bacteria may have four or six copies (two or three
homodimers), depending on the species. The organization
of proteins within the stalk has been characterized
primarily in bacteria, where L7/L12 forms either two or
three homodimers and each homodimer binds to the
extended C-terminal helix of L10. L7/L12 is attached to
the ribosome through L10 and is the only ribosomal
protein that does not directly interact with rRNA.
Archaeal L12p is believed to function in a similar
fashion. However, hybrid ribosomes containing the large
subunit from E. coli with an archaeal stalk are able to
bind archaeal and eukaryotic elongation factors but not
bacterial elongation factors. In several mesophilic and
thermophilic archaeal species, the binding of 23S rRNA
to protein L11 and to the L10/L12p pentameric complex
was found to be temperature-dependent and cooperative.
Length = 106
Score = 28.6 bits (64), Expect = 1.0
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDD 80
EE+ E+ +EE++ E E+EEEEE+
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEEA 98
Score = 28.6 bits (64), Expect = 1.2
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 57 EEEEEDDKEEERVEREEEEEEEDDEEE 83
E+ EE+ E+++EEE+E++EEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
>gnl|CDD|234352 TIGR03779, Bac_Flav_CT_M, Bacteroides conjugative transposon TraM
protein. Members of this protein family are designated
TraM and are found in a proposed transfer region of a
class of conjugative transposon found in the Bacteroides
lineage [Cellular processes, DNA transformation].
Length = 410
Score = 29.7 bits (67), Expect = 1.1
Identities = 13/59 (22%), Positives = 23/59 (38%)
Query: 51 YLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVE 109
+EE+E E ++ E R+ E E +E+ E+ E + + E E
Sbjct: 141 KTDEEKELLREVEELESRLATEPSPAPELEEQLALMEKSYELAAKYMPRGQERLPVAPE 199
>gnl|CDD|145361 pfam02161, Prog_receptor, Progesterone receptor.
Length = 456
Score = 30.0 bits (67), Expect = 1.1
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERR 95
+EE +E+ +D + VER E E E E R E++
Sbjct: 56 QEEPDEKTQDQQSLSDVERAEPEVEASRGRGEGSSRPPEKDSG 98
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 30.1 bits (67), Expect = 1.1
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 56 EEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEICPEA- 114
E E EE+ +++E + E EE D E++ + EE+R+ NR + + PE+
Sbjct: 640 ETEREENARKKEELRGNFELEERGDPEKKDVDWYTEEKRKIEEQLKINRSEFETMVPESR 699
Query: 115 VKIPPSAA 122
V I A
Sbjct: 700 VVIEGYRA 707
>gnl|CDD|219405 pfam07418, PCEMA1, Acidic phosphoprotein precursor PCEMA1. This
family consists of several acidic phosphoprotein
precursor PCEMA1 sequences which appear to be found
exclusively in Plasmodium chabaudi. PCEMA1 is an antigen
that is associated with the membrane of the infected
erythrocyte throughout the entire intraerythrocytic
cycle. The exact function of this family is unclear.
Length = 286
Score = 29.5 bits (66), Expect = 1.2
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 40 DNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEE 91
+++ I E + ++ ++ E E E+E EEE EE+E ++ EE
Sbjct: 235 NDNEVKEKIRREYREWKGDKANTNETEIEDESEDEYEEEAGEEQENEDKGEE 286
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 30.1 bits (68), Expect = 1.2
Identities = 16/59 (27%), Positives = 32/59 (54%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEI 110
E+ E+ + EEE E ++ EE ++++EEE E+E E ++ E +++ E+
Sbjct: 196 ELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEEL 254
Score = 27.8 bits (62), Expect = 5.5
Identities = 13/57 (22%), Positives = 27/57 (47%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEI 110
EE+ E+ E+ EE +E+ + ++ EE + E +E + + R + E+
Sbjct: 532 EEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEEL 588
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 29.9 bits (67), Expect = 1.2
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFE-----REEEEERRK 96
LE+E + +E K+ E E++ + E++ EE+ R ++ E + K
Sbjct: 106 LEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAK 155
>gnl|CDD|235033 PRK02363, PRK02363, DNA-directed RNA polymerase subunit delta;
Reviewed.
Length = 129
Score = 28.8 bits (65), Expect = 1.2
Identities = 7/32 (21%), Positives = 22/32 (68%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEE 84
+++ +++ +++ E + +EE+++DEE+E
Sbjct: 97 GDDDIIDDDILPDDDFDEEDLDEEDDEDEEDE 128
Score = 28.4 bits (64), Expect = 1.5
Identities = 6/31 (19%), Positives = 21/31 (67%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEE 83
++ +++ D + + + +EE++E++++EE
Sbjct: 99 DDIIDDDILPDDDFDEEDLDEEDDEDEEDEE 129
Score = 28.1 bits (63), Expect = 1.9
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 56 EEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
++ + DD + +++ +E+D +EE E EE+EE
Sbjct: 92 KKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDEE 129
Score = 26.9 bits (60), Expect = 4.5
Identities = 11/60 (18%), Positives = 30/60 (50%)
Query: 25 SEWLALVLIDSPRYLDNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEE 84
W + ID +D +++ +++ ++D ++ + E+ +EE+D++EE+
Sbjct: 68 RSWYPVDEIDEEIIPLEEKFDKKKKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEED 127
Score = 26.5 bits (59), Expect = 7.9
Identities = 8/36 (22%), Positives = 22/36 (61%)
Query: 44 YDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEED 79
+ G ++++ +++ D+E+ E +E+EE+E+
Sbjct: 94 FMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDEE 129
>gnl|CDD|239570 cd03488, Topoisomer_IB_N_htopoI_like, Topoisomer_IB_N_htopoI_like :
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB proteins similar to the
monomeric yeast and human topo I. Topo I enzymes are
divided into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. This family may represent more than
one structural domain.
Length = 215
Score = 29.2 bits (66), Expect = 1.2
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 48 IFTYLEEEEEEEEEDDKEEERVEREEEEEEE 78
+F Y + ++EE++ KEE++ + E+E+ E
Sbjct: 90 MFAYFKAQKEEKKAMSKEEKKAIKAEKEKLE 120
>gnl|CDD|218421 pfam05086, Dicty_REP, Dictyostelium (Slime Mold) REP protein. This
family consists of REP proteins from Dictyostelium
(Slime molds). REP protein is likely involved in
transcription regulation and control of DNA replication,
specifically amplification of plasmid at low copy
numbers. The formation of homomultimers may be required
for their regulatory activity.
Length = 910
Score = 29.8 bits (67), Expect = 1.2
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
Query: 48 IFTYLEE---EEEEEEEDDKEEERVEREEEEEEEDDEEEE 84
T LEE + +E EDD +E E ++E+E+ED++E+E
Sbjct: 872 DLTDLEEYLISQFQENEDDDADED-EDQDEDEDEDEDEDE 910
>gnl|CDD|177433 PHA02608, 67, prohead core protein; Provisional.
Length = 80
Score = 27.8 bits (62), Expect = 1.3
Identities = 9/32 (28%), Positives = 27/32 (84%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEE 84
E E+++++EDD +++ + +++++++DDE++E
Sbjct: 49 EPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
Score = 27.1 bits (60), Expect = 2.8
Identities = 7/31 (22%), Positives = 27/31 (87%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEE 84
EE E++++D+ +++ +++++++++DD++E+
Sbjct: 48 EEPEDDDDDEDDDDDDDKDDKDDDDDDDDED 78
Score = 25.5 bits (56), Expect = 7.7
Identities = 9/33 (27%), Positives = 28/33 (84%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEE 84
+E EE E+++DD++++ + +++++++DD+++E
Sbjct: 45 IEGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDE 77
Score = 25.5 bits (56), Expect = 9.4
Identities = 11/35 (31%), Positives = 26/35 (74%)
Query: 56 EEEEEEDDKEEERVEREEEEEEEDDEEEERFEREE 90
E EE EDD ++E + +++++++DD++++ E +E
Sbjct: 46 EGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
>gnl|CDD|220785 pfam10498, IFT57, Intra-flagellar transport protein 57. Eukaryotic
cilia and flagella are specialised organelles found at
the periphery of cells of diverse organisms.
Intra-flagellar transport (IFT) is required for the
assembly and maintenance of eukaryotic cilia and
flagella, and consists of the bidirectional movement of
large protein particles between the base and the distal
tip of the organelle. IFT particles contain multiple
copies of two distinct protein complexes, A and B, which
contain at least 6 and 11 protein subunits. IFT57 is
part of complex B but is not, however, required for the
core subunits to stay associated. This protein is known
as Huntington-interacting protein-1 in humans.
Length = 355
Score = 29.7 bits (67), Expect = 1.3
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTV 108
EE+EEE D+++ + EE EEE + EE + E +E + ++ T + K V
Sbjct: 127 PNEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKYKRGDTSLTPQAKDV 182
Score = 28.9 bits (65), Expect = 1.9
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 51 YLEEEEEEEEEDDKEEERVEREEEEE---EEDDEEEERFEREEEEERRKVTTYSE 102
Y EE+EEE D+ + E + E EEE EE D++E E + + +T ++
Sbjct: 126 YPNEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKYKRGDTSLTPQAK 180
>gnl|CDD|237549 PRK13897, PRK13897, type IV secretion system component VirD4;
Provisional.
Length = 606
Score = 29.8 bits (67), Expect = 1.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDE 81
E EE E E E +EE+++EDD+
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
>gnl|CDD|218954 pfam06246, Isy1, Isy1-like splicing family. Isy1 protein is
important in the optimisation of splicing.
Length = 253
Score = 29.2 bits (66), Expect = 1.3
Identities = 15/64 (23%), Positives = 31/64 (48%)
Query: 45 DSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENR 104
D+ + Y +EE+ E + E E+ E+ EE + ++E + EE+E + ++
Sbjct: 163 DADYYGYRDEEDGVLLEYEAEREKELIEKLVEEWKEIQDEDLQAEEDEREEDIYIPLDDD 222
Query: 105 QKTV 108
+ V
Sbjct: 223 AEFV 226
>gnl|CDD|236153 PRK08116, PRK08116, hypothetical protein; Validated.
Length = 268
Score = 29.2 bits (66), Expect = 1.4
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 72 EEEEEEEDDEEEERFEREEEEERRKVTTYSENRQK 106
E E EE + EEE E++ ER K + + + +
Sbjct: 46 EREAEEAKEREEENREKQRRIERLKSNSLLDEKFR 80
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 29.9 bits (67), Expect = 1.4
Identities = 11/48 (22%), Positives = 20/48 (41%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTY 100
E E E D EE +++ + +E+ E +E+ E + Y
Sbjct: 182 ETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLY 229
Score = 29.6 bits (66), Expect = 1.8
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVE 109
E+E+EE+ ++EEER +R +EE E EE+ + +++ E
Sbjct: 948 EKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEE 1003
Score = 27.2 bits (60), Expect = 7.8
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 52 LEEEEEEEEEDDKEEERVER----EEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKT 107
L++E+EE EE +KE + +E EEEEEE+ ++ +E+ E+ EEE K SE
Sbjct: 331 LKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSA 390
Query: 108 VEI 110
++
Sbjct: 391 AKL 393
>gnl|CDD|172358 PRK13831, PRK13831, conjugal transfer protein TrbI; Provisional.
Length = 432
Score = 29.7 bits (67), Expect = 1.4
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 50 TYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEE--ERFEREEEEE 93
T +E ++EE+ + + +REE + EEE R +RE+EE+
Sbjct: 94 TPVETQQEEKAVNPFTPQPGQREERRPTLESEEEWRARLKREQEEQ 139
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 29.6 bits (67), Expect = 1.4
Identities = 15/46 (32%), Positives = 19/46 (41%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVT 98
E E+ EE +E E E E EE ++ EE E E E
Sbjct: 741 EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEE 786
Score = 28.5 bits (64), Expect = 3.4
Identities = 20/42 (47%), Positives = 24/42 (57%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
LEE EEE EE +E ER+E EE E+ EE E+ E E
Sbjct: 442 LEELEEELEELQEELERLEEALEELREELEEAEQALDAAERE 483
Score = 27.3 bits (61), Expect = 7.6
Identities = 12/54 (22%), Positives = 24/54 (44%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQK 106
++ E E ++ EER+ + +E E + E E E EE ++ ++
Sbjct: 733 KDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEE 786
>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit. This model
describes Pseudomonas denitrificans CobT gene product,
which is a cobalt chelatase subunit that functions in
cobalamin biosynthesis. Cobalamin (vitamin B12) can be
synthesized via several pathways, including an aerobic
pathway (found in Pseudomonas denitrificans) and an
anaerobic pathway (found in P. shermanii and Salmonella
typhimurium). These pathways differ in the point of
cobalt insertion during corrin ring formation. There are
apparently a number of variations on these two pathways,
where the major differences seem to be concerned with
the process of ring contraction. Confusion regarding the
functions of enzymes found in the aerobic vs. anaerobic
pathways has arisen because nonhomologous genes in these
different pathways were given the same gene symbols.
Thus, cobT in the aerobic pathway (P. denitrificans) is
not a homolog of cobT in the anaerobic pathway (S.
typhimurium). It should be noted that E. coli
synthesizes cobalamin only when it is supplied with the
precursor cobinamide, which is a complex intermediate.
Additionally, all E. coli cobalamin synthesis genes
(cobU, cobS and cobT) were named after their Salmonella
typhimurium homologs which function in the anaerobic
cobalamin synthesis pathway. This model describes the
aerobic cobalamin pathway Pseudomonas denitrificans CobT
gene product, which is a cobalt chelatase subunit, with
a MW ~70 kDa. The aerobic pathway cobalt chelatase is a
heterotrimeric, ATP-dependent enzyme that catalyzes
cobalt insertion during cobalamin biosynthesis. The
other two subunits are the P. denitrificans CobS
(TIGR01650) and CobN (pfam02514 CobN/Magnesium
Chelatase) proteins. To avoid potential confusion with
the nonhomologous Salmonella typhimurium/E.coli cobT
gene product, the P. denitrificans gene symbol is not
used in the name of this model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 600
Score = 29.5 bits (66), Expect = 1.4
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 53 EEEEEEEEEDD--KEEERVEREEEEEEEDD----EEEERFEREEEE 92
E E+EE+ +DD E E+ E+ E E E + +E E +RE E
Sbjct: 208 ESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESES 253
Score = 29.1 bits (65), Expect = 1.9
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 51 YLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
++ E E+EED +++ E E+EE+ E + E + +E E
Sbjct: 203 MGDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESE 245
>gnl|CDD|240331 PTZ00254, PTZ00254, 40S ribosomal protein SA; Provisional.
Length = 249
Score = 29.3 bits (66), Expect = 1.4
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 49 FTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
F + + EE EE+E+ E + + EE E + E
Sbjct: 202 FFWRDPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
>gnl|CDD|214818 smart00784, SPT2, SPT2 chromatin protein. This entry includes the
Saccharomyces cerevisiae protein SPT2 which is a
chromatin protein involved in transcriptional
regulation.
Length = 106
Score = 28.1 bits (63), Expect = 1.4
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 56 EEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
E + +EE R R E D EEER E+EEE E+R
Sbjct: 65 EAGGADIQEEERRSARLARLE---DREEERLEKEEEREKRA 102
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 29.7 bits (67), Expect = 1.5
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 49 FTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
F + ++ E + K E+ +++ E + E+ ++E E E+ EE R+K
Sbjct: 275 FERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQK 322
Score = 29.3 bits (66), Expect = 1.7
Identities = 11/47 (23%), Positives = 16/47 (34%)
Query: 50 TYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
+ E +E E E+ E + EE R E EE +
Sbjct: 381 NLDRQLSELKEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLKS 427
>gnl|CDD|220377 pfam09747, DUF2052, Coiled-coil domain containing protein
(DUF2052). This entry is of sequences of two conserved
domains separated by a region of low complexity,
spanning some 200 residues. The function is unknown.
Length = 178
Score = 28.9 bits (65), Expect = 1.6
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSE 102
L E++EEEE ++EEE E E EEEEE+ + E EEE+ +
Sbjct: 73 LLEQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTP 123
Score = 28.2 bits (63), Expect = 2.8
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 56 EEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEER 94
+ EE + E++ E E EEEE+D EEE E EEE +R
Sbjct: 65 DREEARLELLEQQEEEESAEEEEEDPEEENEEEEEEYQR 103
Score = 27.4 bits (61), Expect = 4.8
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 50 TYLEEEEEEEEEDDKEEERVEREEEE--EEEDDEEEERFEREEEEE 93
EEE EEEE+D EEE E EEE +EEEE + +E
Sbjct: 76 QQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELP 121
>gnl|CDD|217348 pfam03064, U79_P34, HSV U79 / HCMV P34. This family represents
herpes virus protein U79 and cytomegalovirus early
phosphoprotein P34 (UL112).
Length = 238
Score = 29.1 bits (65), Expect = 1.6
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEE-----EERFEREEEEERRKVTTYSENRQKT 107
++E+ E+ K +E +++EE+ +DE+ + K E RQK
Sbjct: 166 QKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGSSGGQSGLSTKDEPPKEKRQKH 225
Query: 108 VE 109
+
Sbjct: 226 HD 227
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 29.7 bits (67), Expect = 1.6
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 51 YLEEEEEEEEEDDKE-EERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSE 102
YLE+E +E +E + +E+++ E+E E + ++E E E EE +
Sbjct: 830 YLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLES 882
Score = 27.7 bits (62), Expect = 5.7
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTT 99
EEE E+ ++ E +R EE E+ +E ++ + EEE+ +V
Sbjct: 248 SLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKE 294
>gnl|CDD|205206 pfam13025, DUF3886, Protein of unknown function (DUF3886). This
family of proteins is functionally uncharacterized.
This family of proteins is found in bacteria. Proteins
in this family are approximately 90 amino acids in
length. There are two completely conserved L residues
that may be functionally important.
Length = 70
Score = 27.3 bits (61), Expect = 1.7
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEE 83
L+ EEE+ EE+++ +R ER+E E+ + EE
Sbjct: 29 LKAEEEKREEEEEARKREERKEREKNKSFEEL 60
>gnl|CDD|180903 PRK07238, PRK07238, bifunctional RNase H/acid phosphatase;
Provisional.
Length = 372
Score = 29.2 bits (66), Expect = 1.7
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 145 VQFVWVPSHVGIAGNEEADRLAKEALTSA 173
V + W+P A N ADRLA EA+ +A
Sbjct: 109 VTYTWIPR----ARNAHADRLANEAMDAA 133
>gnl|CDD|224114 COG1193, COG1193, Mismatch repair ATPase (MutS family) [DNA
replication, recombination, and repair].
Length = 753
Score = 29.6 bits (67), Expect = 1.7
Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 12/95 (12%)
Query: 47 GIFTYLEEEEEEEEEDDKEE-----ERVEREEEEEEEDDEEEERFEREEEEERRKV---- 97
G+ + EE + E ++KE E++E +E EE+ EE E+ E E
Sbjct: 486 GLPEPIIEEAKTEFGEEKELLEELIEKLEEVRKELEEELEEVEKLLDEVELLTGANSGGK 545
Query: 98 TTYSENRQKTVEICPEAVKIPPSAATILTKWPDDI 132
T+ E + + V A P A D
Sbjct: 546 TSLLELKAQIVV---LAHMGLPVPAEEAKVEAVDE 577
>gnl|CDD|184860 PRK14858, tatA, twin arginine translocase protein A; Provisional.
Length = 108
Score = 27.9 bits (62), Expect = 1.7
Identities = 12/54 (22%), Positives = 22/54 (40%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQK 106
EE EE++ E+ ++E E E EE++ + + T S+
Sbjct: 52 EESRTAEEKEKAEKLAETKKEAEAPEAKAEEDQAPKPKGAGEPPATVASKAGDG 105
>gnl|CDD|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members
of this protein family are the bacterial ATP-dependent
chaperone ClpB. This protein belongs to the AAA family,
ATPases associated with various cellular activities
(pfam00004). This molecular chaperone does not act as a
protease, but rather serves to disaggregate misfolded
and aggregated proteins [Protein fate, Protein folding
and stabilization].
Length = 852
Score = 29.5 bits (67), Expect = 1.8
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEE----EEEDDEEEERFEREEEE 92
+E E ++E+D+ +ER+E E+E EEE + EE+++ E+
Sbjct: 419 IEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKAA 463
>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO. Bacillus
spores are protected by a protein shell consisting of
over 50 different polypeptides, known as the coat. This
family of proteins has an important morphogenetic role
in coat assembly, it is involved in the assembly of at
least 5 different coat proteins including CotB, CotG,
CotS, CotSA and CotW. It is likely to act at a late
stage of coat assembly.
Length = 185
Score = 28.6 bits (64), Expect = 1.8
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKV 97
+E+E E E + E+ E+EE +EE+ EEE +++E K
Sbjct: 66 KEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQEVFSFKR 110
Score = 28.6 bits (64), Expect = 2.1
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
EE++ E EE +KE+E E E E+ E E+EE + EE+EE
Sbjct: 55 EEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEE 95
Score = 28.3 bits (63), Expect = 2.3
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSE 102
E+E E E +D E++ + E +EEE +EE E +++E ++ + E
Sbjct: 66 KEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQEVFSFKRKKPFKE 116
Score = 27.5 bits (61), Expect = 4.0
Identities = 19/70 (27%), Positives = 35/70 (50%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEICP 112
E+EEE+E D+ + + E ++ E EE ++E+E E E E+ + +++ E
Sbjct: 38 EKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEA 97
Query: 113 EAVKIPPSAA 122
E VK +
Sbjct: 98 EDVKQQEVFS 107
Score = 27.1 bits (60), Expect = 7.1
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 51 YLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
Y E E+E+E + + E+ E++E+EE +EE+E + +++
Sbjct: 61 YEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQEVF 106
Score = 26.7 bits (59), Expect = 7.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 50 TYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFER 88
E E E+ E ++EE + EE+EEE +D +++
Sbjct: 69 EAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQEVFS 107
>gnl|CDD|221968 pfam13189, Cytidylate_kin2, Cytidylate kinase-like family. This
family includes enzymes related to cytidylate kinase.
Length = 176
Score = 28.7 bits (65), Expect = 1.8
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 65 EEERVEREEEEEEEDDEEEERFEREEEEERRK 96
E+RVER E E ++E E+ ++ ++ER K
Sbjct: 121 LEDRVERVMEREGLSEKEAEKLIKKTDKERAK 152
>gnl|CDD|224680 COG1766, fliF, Flagellar basal body M-ring protein [Cell motility
and secretion].
Length = 545
Score = 29.3 bits (66), Expect = 1.8
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 10/75 (13%)
Query: 58 EEEEDDKEEERVEREEEEEEEDDE----EEERFEREEEEERRKVTTYSENRQKTVEICPE 113
E + EE + EEE+ +E +E+ +EE+RR E ++ + PE
Sbjct: 473 GAEALEAAEEERQGPEEEDVLPEEIRDSNDEQLGLGDEEQRRGKEVLLERLREMAKEDPE 532
Query: 114 AVKIPPSAATILTKW 128
V A ++ +W
Sbjct: 533 RV------AKVIRQW 541
>gnl|CDD|217286 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA
binding fragment. Topoisomerase I promotes the
relaxation of DNA superhelical tension by introducing a
transient single-stranded break in duplex DNA and are
vital for the processes of replication, transcription,
and recombination. This family may be more than one
structural domain.
Length = 215
Score = 28.7 bits (65), Expect = 1.9
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 48 IFTYLEEEEEEEEEDDKEEERVEREEEEEEE 78
I+ Y E E+E+++ KEE++ +EE+++ E
Sbjct: 91 IYEYFEAEKEKKKAMSKEEKKAIKEEKDKLE 121
>gnl|CDD|165339 PHA03046, PHA03046, Hypothetical protein; Provisional.
Length = 142
Score = 28.2 bits (63), Expect = 1.9
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 61 EDDKEEERVEREEEEEEEDDEEEERFEREEEE 92
+DD+E +R E E+ EED ++R + EEEE
Sbjct: 11 DDDEENDRNEHREKTSEEDGHYKKRLDVEEEE 42
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The family
functions as a highly conserved exonuclease that is
required for the 5'-end maturation of 5.8S and 25S
rRNAs, demonstrating that 5'-end processing also has a
redundant pathway. Nop25 binds late pre-60S ribosomes,
accompanying them from the nucleolus to the nuclear
periphery; and there is evidence for both physical and
functional links between late 60S subunit processing and
export.
Length = 134
Score = 28.1 bits (63), Expect = 1.9
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTT 99
LEEE ++EE+ + E+ ++E E + +E E +E + TT
Sbjct: 79 LEEENDDEEDAETEDTEDVEDDEWEGFPEPTVTDYEEEYIDEDKYKTT 126
Score = 26.1 bits (58), Expect = 8.3
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTT 99
EE ++EE+ + ++ E VE +E E + + E +E++ K T
Sbjct: 81 EENDDEEDAETEDTEDVEDDEWEGFPEPTVTDYEEEYIDEDKYKTTV 127
Score = 26.1 bits (58), Expect = 9.3
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 49 FTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
+ EEE +D+++ E + E+ E++E + E + EEE
Sbjct: 72 RKEALKLLEEENDDEEDAETEDTEDVEDDEWEGFPEPTVTDYEEE 116
>gnl|CDD|214923 smart00937, PCRF, This domain is found in peptide chain release
factors.
Length = 116
Score = 27.8 bits (63), Expect = 1.9
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEER 85
LEEEE++E + EEE E E E EEE +E +
Sbjct: 3 LEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 26.3 bits (59), Expect = 7.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 57 EEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEE 92
E EE++ +E R EEE EE + E EE E +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 25.9 bits (58), Expect = 9.7
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 56 EEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERR 95
E EEE+D E RE EEE ++ E E E EE +
Sbjct: 1 ELLEEEEDDE----MRELAEEELEELEAELEEELEELLKL 36
>gnl|CDD|217956 pfam04194, PDCD2_C, Programmed cell death protein 2, C-terminal
putative domain.
Length = 165
Score = 28.5 bits (64), Expect = 1.9
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 51 YLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
EEEE E E E + ++ E+E +E+EE
Sbjct: 6 VFPEEEEYETLHAPSLPEEPEEREIDAFEELEKEGGGGKEDEE 48
>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT
(nicotinate-mononucleotide:5, 6-dimethylbenzimidazole
phosphoribosyltransferase) [Coenzyme metabolism].
Length = 620
Score = 29.0 bits (65), Expect = 2.0
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
EE+ ++++ D+ E+ REE E ++ EE+E + E E
Sbjct: 233 EEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGE 273
Score = 29.0 bits (65), Expect = 2.1
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEED----DEEEERFEREEEEE 93
EE E +E ++ E E + E EE E D E+ E E +E+ E
Sbjct: 252 EESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDEDTE 296
Score = 28.7 bits (64), Expect = 2.8
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
++ EE+ +++ ++ E+ E EE E + EE+E
Sbjct: 224 DDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDE 264
Score = 28.3 bits (63), Expect = 3.9
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
EE E D+ EE+ E + E EE + + + E +
Sbjct: 249 AGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESD 289
Score = 27.9 bits (62), Expect = 5.5
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Query: 53 EEEEEEEEEDD-------KEEERVEREEEEEEEDDEEEERFEREEEE 92
EE+ +EE+ DD E E E +E +++E E + E EE
Sbjct: 228 EEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEE 274
Score = 27.5 bits (61), Expect = 7.1
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEER 94
+EE+ ++++ D E+ EE E D+ EE+ E + E
Sbjct: 232 DEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGE 273
Score = 27.1 bits (60), Expect = 9.7
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 53 EEEEEEEEEDDKEEERVEREEE-----EEEEDDEEEERFEREEEEER 94
+E EE+E + + E E E + E+ E DE +E E E+ R
Sbjct: 257 SDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDEDTETPGEDAR 303
>gnl|CDD|191249 pfam05279, Asp-B-Hydro_N, Aspartyl beta-hydroxylase N-terminal
region. This family includes the N-terminal regions of
the junctin, junctate and aspartyl beta-hydroxylase
proteins. Junctate is an integral ER/SR membrane calcium
binding protein, which comes from an alternatively
spliced form of the same gene that generates aspartyl
beta-hydroxylase and junctin. Aspartyl beta-hydroxylase
catalyzes the post-translational hydroxylation of
aspartic acid or asparagine residues contained within
epidermal growth factor (EGF) domains of proteins.
Length = 240
Score = 28.7 bits (64), Expect = 2.0
Identities = 13/57 (22%), Positives = 33/57 (57%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVE 109
+ +++ EE+ KE+ + E+ + +E+ E + +E++ + S++RQ+T+E
Sbjct: 95 RKTKQKVEEEVKEQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQETLE 151
Score = 28.4 bits (63), Expect = 3.0
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSE 102
+E+ E+E++ +E VE+ E + E D+ E EE+ E
Sbjct: 176 DMKEKASEQENEDSKEPVEKAERTKAETDDVTEEDYDEEDNPVEDSKAIKE 226
>gnl|CDD|149439 pfam08375, Rpn3_C, Proteasome regulatory subunit C-terminal.
This eukaryotic domain is found at the C-terminus of
26S proteasome regulatory subunits such as the
non-ATPase Rpn3 subunit which is essential for
proteasomal function. It occurs together with the
PCI/PINT domain (pfam01399).
Length = 68
Score = 26.9 bits (60), Expect = 2.0
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEEE 84
++E++E++K EE ER++ E E E E
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSE 63
Score = 26.1 bits (58), Expect = 3.6
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 50 TYLEEEEEEEEEDDKEEERVEREEEEEEEDD 80
EE+ EE E D+ E + +E E + DD
Sbjct: 38 KKEEEKAEEARERDQLELELAKELSEGDLDD 68
Score = 25.0 bits (55), Expect = 9.5
Identities = 9/32 (28%), Positives = 22/32 (68%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEE 84
E++EEE+ E+ +E +++E E +E + + ++
Sbjct: 37 EKKEEEKAEEARERDQLELELAKELSEGDLDD 68
>gnl|CDD|224273 COG1354, scpA, Rec8/ScpA/Scc1-like protein (kleisin family)
[Replication, recombination, and repair].
Length = 248
Score = 28.8 bits (65), Expect = 2.0
Identities = 17/58 (29%), Positives = 24/58 (41%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVE 109
EEEE E+EE ++ + + EE E E E EEE R + + E
Sbjct: 77 KEEEEAEDEELEEPRDELVARLEEYERYKEAAELLAELEEERRDVFSKIKPEIKIKKE 134
>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306). This
family of proteobacterial species proteins has no known
function.
Length = 115
Score = 28.0 bits (63), Expect = 2.0
Identities = 12/30 (40%), Positives = 13/30 (43%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEE 82
E EEE EEEE E +DEE
Sbjct: 21 PAETAEEEAAAAAPAPAPEEEEEAELEDEE 50
Score = 27.7 bits (62), Expect = 2.8
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
EE E E ++E EEE++ E E E EE +
Sbjct: 16 EEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELD 56
>gnl|CDD|223626 COG0552, FtsY, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 340
Score = 28.8 bits (65), Expect = 2.1
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEE 82
EEE EE E +KE+ E EEEE+E E
Sbjct: 7 LEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 28.8 bits (65), Expect = 2.4
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 51 YLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEE 84
+ E+ EEE EE + E+E++E E+EEEE++ E
Sbjct: 3 FFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 29.0 bits (65), Expect = 2.1
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEE 84
EEE E E+E EE + ++EEEED + E+
Sbjct: 172 EEESESEDESKSEESAEDDSDDEEEEDSDSED 203
Score = 28.6 bits (64), Expect = 2.9
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREE 90
++++EEE + E+E E E++ DDEEEE + E+
Sbjct: 167 SDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSED 203
Score = 28.3 bits (63), Expect = 4.0
Identities = 10/44 (22%), Positives = 22/44 (50%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
++ +++E + ++ E E E E+E EE + ++EE
Sbjct: 155 TKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEED 198
Score = 27.9 bits (62), Expect = 5.3
Identities = 16/54 (29%), Positives = 22/54 (40%)
Query: 40 DNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
D S YD + +EEE EE E E +E + + E R + EE
Sbjct: 203 DYSQYDGMLVDSSDEEEGEEAPSINYNEDTSESESDESDSEISESRSVSDSEES 256
>gnl|CDD|236410 PRK09202, nusA, transcription elongation factor NusA; Validated.
Length = 470
Score = 29.1 bits (66), Expect = 2.2
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVE 109
+EE EE + +E +EE+ ++ E + E K+ +E KT+E
Sbjct: 397 FDEETVEELRERAKEALETEALAQEEKLADDLLSLEGLDRELAFKL---AEKGIKTLE 451
>gnl|CDD|224657 COG1743, COG1743, Adenine-specific DNA methylase containing a
Zn-ribbon [DNA replication, recombination, and repair].
Length = 875
Score = 29.0 bits (65), Expect = 2.3
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 47 GIFTYLEEEEEEEEEDDKEEERVEREEEE-EEEDDEEEERFEREEEEERRKV 97
G+ Y E EEE + +V R + E DE+ ERFE EE R +
Sbjct: 264 GLRRYHEGEEEFARPRLLAKVKVGRGDLIFEPATDEDLERFELAREELREEW 315
>gnl|CDD|237538 PRK13876, PRK13876, conjugal transfer coupling protein TraG;
Provisional.
Length = 663
Score = 28.7 bits (65), Expect = 2.4
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKV 97
+ E E EE E E E + ++DD+++ R+ + + V
Sbjct: 605 QPELPEHEEIVPEPRPPENEFDLLDDDDDDDAARPRQLDRAMQGV 649
>gnl|CDD|216643 pfam01676, Metalloenzyme, Metalloenzyme superfamily. This family
includes phosphopentomutase and
2,3-bisphosphoglycerate-independent phosphoglycerate
mutase. This family is also related to pfam00245. The
alignment contains the most conserved residues that are
probably involved in metal binding and catalysis.
Length = 423
Score = 28.9 bits (65), Expect = 2.4
Identities = 25/108 (23%), Positives = 36/108 (33%), Gaps = 24/108 (22%)
Query: 83 EERFEREE----EEERRKVTTYSENRQKTVEICPEAVKIPPSAATILTKWPDDIQNFLIL 138
RE EE ++ +K + P ++P A I T+ P D N
Sbjct: 193 RADRARELLYALVEEAFEILERHPINEKRIIAVPYDGELP--ANFIFTRGPGDYPNTPGE 250
Query: 139 FLSKLD--------------VQFVW----VPSHVGIAGNEEADRLAKE 168
FL + V F + VPS G + + D AKE
Sbjct: 251 FLERNGLKQARIAETEKYKHVTFFFNGVLVPSPEGATYDLKPDMSAKE 298
>gnl|CDD|224530 COG1614, CdhC, CO dehydrogenase/acetyl-CoA synthase beta subunit
[Energy production and conversion].
Length = 470
Score = 28.6 bits (64), Expect = 2.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 50 TYLEEEEEEEEEDDKEEERVEREEEEEEE 78
+ EEEEEEEEE+++E E EE
Sbjct: 400 RWAEEEEEEEEEEEEEAAEAEAPMEEPVP 428
Score = 28.6 bits (64), Expect = 2.5
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 63 DKEEERVEREEEEEEEDDEEEERFEREEEEE 93
+K VER EEEEE++EEEE E E
Sbjct: 392 EKGHPVVERWAEEEEEEEEEEEEEAAEAEAP 422
Score = 28.6 bits (64), Expect = 2.8
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 67 ERVEREEEEEEEDDEEEERFEREEEEE 93
ER EEEEEEE++EEE EE
Sbjct: 399 ERWAEEEEEEEEEEEEEAAEAEAPMEE 425
Score = 28.2 bits (63), Expect = 3.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEEERFE 87
E EEE+++EEE E E E +E FE
Sbjct: 399 ERWAEEEEEEEEEEEEEAAEAEAPMEEPVPGFE 431
>gnl|CDD|225880 COG3343, RpoE, DNA-directed RNA polymerase, delta subunit
[Transcription].
Length = 175
Score = 28.2 bits (63), Expect = 2.6
Identities = 15/41 (36%), Positives = 30/41 (73%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEE 92
L++E ++E+EDD E + E++E +ED++++E E EE++
Sbjct: 135 LDDENDDEDEDDDEIVEILIEDDEVDEDEDDDEDEEDEEDK 175
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 28.9 bits (65), Expect = 2.8
Identities = 8/29 (27%), Positives = 20/29 (68%)
Query: 56 EEEEEEDDKEEERVEREEEEEEEDDEEEE 84
+ + +D ++ V+ E+E++EDDE+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 28.1 bits (63), Expect = 5.4
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDE 81
+ + E++DD E + E E++E++EDD+
Sbjct: 1359 KKSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 26.9 bits (60), Expect = 9.9
Identities = 6/30 (20%), Positives = 19/30 (63%)
Query: 51 YLEEEEEEEEEDDKEEERVEREEEEEEEDD 80
+ E+++D + ++ + ++E++E+DD
Sbjct: 1359 KKSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
>gnl|CDD|240419 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 28.6 bits (64), Expect = 2.9
Identities = 14/62 (22%), Positives = 30/62 (48%)
Query: 48 IFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKT 107
+ + EE +E + E E E +EE+ + +++ER ++EEE++ + T
Sbjct: 2568 LLEKAKIEESRKERERIESETQEDNTDEEQINRQQQERLQKEEEQKAYSQERLNREVSGT 2627
Query: 108 VE 109
+
Sbjct: 2628 DD 2629
Score = 27.5 bits (61), Expect = 6.9
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKT 107
E E E +ED+ +EE++ R+++E + +EE++ + +E T + T
Sbjct: 2582 ERIESETQEDNTDEEQINRQQQERLQKEEEQKAYSQERLNREVSGTDDTNKNHNT 2636
>gnl|CDD|235052 PRK02597, rpoC2, DNA-directed RNA polymerase subunit beta';
Provisional.
Length = 1331
Score = 28.8 bits (65), Expect = 2.9
Identities = 16/69 (23%), Positives = 25/69 (36%)
Query: 14 PERTYLSGLPDSEWLALVLIDSPRYLDNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREE 73
P R Y S L D L S +D S + F + ++E +D +
Sbjct: 1263 PARPYASSLDDPSDEDLEATRSRHGIDPSSSNFAAFARPDADDELLIDDQLPDPAALEGL 1322
Query: 74 EEEEEDDEE 82
+EE +E
Sbjct: 1323 QEEGLLSDE 1331
>gnl|CDD|130727 TIGR01666, YCCS, TIGR01666 family membrane protein. This model
represents a clade of sequences from gamma and beta
proteobacteria. These proteins are >700 amino acids long
and many have been annotated as putative membrane
proteins. The gene from Salmonella has been annotated as
a putative efflux transporter. The gene from E. coli has
the name yccS [Cell envelope, Other].
Length = 704
Score = 28.7 bits (64), Expect = 2.9
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 22 LPDSEWLALVLIDSPRYLDNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDE 81
L + + A L D + I+T EE E ++++E +E E ++E
Sbjct: 620 LKNLQQTAQFL-DGFYPVA----KKLIYTLEHIEEIPEAIFNQQQESIETLELRKQEMTA 674
Query: 82 EEERFER 88
EE
Sbjct: 675 EERAVFS 681
>gnl|CDD|184899 PRK14906, PRK14906, DNA-directed RNA polymerase subunit beta'/alpha
domain fusion protein; Provisional.
Length = 1460
Score = 28.7 bits (64), Expect = 3.0
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 44 YDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFER 88
+ S I T +++E EE+ DD +E EE + E D E R
Sbjct: 133 FASYIITSVDKEAREEDADDLRDELAADLEELDAERDRLIEATRR 177
Score = 27.5 bits (61), Expect = 6.9
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREE 90
E++E +D ++ER+ EE E D EE ER+
Sbjct: 183 VPEDDEFVDDIGDDERLTAEEVRAEVADIYEEYNERKA 220
>gnl|CDD|218581 pfam05416, Peptidase_C37, Southampton virus-type processing
peptidase. Corresponds to Merops family C37.
Norwalk-like viruses (NLVs), including the Southampton
virus, cause acute non-bacterial gastroenteritis in
humans. The NLV genome encodes three open reading frames
(ORFs). ORF1 encodes a polyprotein, which is processed
by the viral protease into six proteins.
Length = 535
Score = 28.7 bits (64), Expect = 3.0
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 12/64 (18%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEEERFE----------REEEEERRK--VTTYSE 102
+E E+ + EEE ER+ E + +EEE + ++ +EER K + T S+
Sbjct: 275 QEYLEDRERYEEELAERQATEADFCEEEEAKIRQRIFGLRKTRKQRKEERAKLGLVTGSD 334
Query: 103 NRQK 106
R++
Sbjct: 335 IRKR 338
>gnl|CDD|218197 pfam04661, Pox_I3, Poxvirus I3 ssDNA-binding protein.
Length = 263
Score = 28.1 bits (63), Expect = 3.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEE 83
E + EE+ + VE ++E EE+D EE
Sbjct: 229 ETDTEEDIVRGLGVVELDDECIEEEDLEE 257
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 28.6 bits (65), Expect = 3.1
Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 54 EEEEEEEEDDKEEERVEREEEE-EEEDDEEEERFEREEEEERRKV 97
E E++ EE + + E+ +EE EE+ ++ +E ++ EE ++
Sbjct: 531 ELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEA 575
Score = 27.1 bits (61), Expect = 8.1
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEER 94
LE++ EE E KE E+++ E EE++E +EEE EE E+
Sbjct: 532 LEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKE 574
>gnl|CDD|219358 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32. This family
consists of several Mycoplasma species specific
Cytadhesin P32 and P30 proteins. P30 has been found to
be membrane associated and localised on the tip
organelle. It is thought that it is important in
cytadherence and virulence.
Length = 279
Score = 28.5 bits (63), Expect = 3.1
Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 64 KEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSE-NRQKTVEICPEAVKIPP 119
++E+R+ E+E +E+ E+ +R + E++ ++ E N Q+ + V P
Sbjct: 97 RKEKRLLEEKERQEQMAEQLQRISEQNEQQAIEIDPTEEVNTQEPTQPAGVNVANNP 153
>gnl|CDD|113290 pfam04514, BTV_NS2, Bluetongue virus non-structural protein NS2.
This family includes NS2 proteins from other members of
the Orbivirus genus. NS2 is a non-specific
single-stranded RNA-binding protein that forms large
homomultimers and accumulates in viral inclusion bodies
of infected cells. Three RNA binding regions have been
identified in Bluetongue virus serotype 17 at residues
2-11, 153-166 and 274-286. NS2 multimers also possess
nucleotidyl phosphatase activity. The precise function
of NS2 is not known, but it may be involved in the
transport and condensation of viral mRNAs.
Length = 363
Score = 28.3 bits (63), Expect = 3.2
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEE 91
LEE + ++ + EE VER+ ++E+E E+ E E + E
Sbjct: 235 LEERRRDLRKEQELEENVERDSDDEDEHGEDSEDGETKPE 274
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal
domain. This domain is found in a number of different
types of plant proteins including NAM-like proteins.
Length = 147
Score = 27.7 bits (62), Expect = 3.2
Identities = 14/49 (28%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 51 YLEEEEEEEEEDDKEEERVERE--EEEEEEDDEEEERFEREEEEERRKV 97
L+ ++EE E++ ++EER + E E+E + E+++ E + +E +K+
Sbjct: 76 KLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKLMKEEKKI 124
>gnl|CDD|114172 pfam05432, BSP_II, Bone sialoprotein II (BSP-II). Bone
sialoprotein (BSP) is a major structural protein of the
bone matrix that is specifically expressed by
fully-differentiated osteoblasts. The expression of
bone sialoprotein (BSP) is normally restricted to
mineralised connective tissues of bones and teeth where
it has been associated with mineral crystal formation.
However, it has been found that ectopic expression of
BSP occurs in various lesions, including oral and
extraoral carcinomas, in which it has been associated
with the formation of microcrystalline deposits and the
metastasis of cancer cells to bone.
Length = 291
Score = 28.1 bits (62), Expect = 3.4
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEE 83
EEE EEE EEE E + E+E+ E E
Sbjct: 59 SSEEEGEEETSNEEENNEDSDGNEDEEAEAE 89
Score = 28.1 bits (62), Expect = 3.7
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEE 84
++ +E+E D++EE E EEEEE E +E E+
Sbjct: 126 GKKATKEDESDEDEEEEEEEEEEEAEVEENEQ 157
Score = 27.0 bits (59), Expect = 7.5
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 64 KEEERVEREEEEEEEDDEEEERFEREE 90
KE+E E EEEEEEE++EE E E E+
Sbjct: 131 KEDESDEDEEEEEEEEEEEAEVEENEQ 157
Score = 27.0 bits (59), Expect = 9.6
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 66 EERVEREEEEEEEDDEEEERFEREEEEERRKVTT 99
++ +E+E +E+++EEEE E E E E + T
Sbjct: 126 GKKATKEDESDEDEEEEEEEEEEEAEVEENEQGT 159
>gnl|CDD|235851 PRK06676, rpsA, 30S ribosomal protein S1; Reviewed.
Length = 390
Score = 28.3 bits (64), Expect = 3.4
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 10/52 (19%)
Query: 52 LEEEEEEE---EEDDKEEERV-------EREEEEEEEDDEEEERFEREEEEE 93
LEE +E + E ++EE+R+ E EEE+ EE ++E EEE
Sbjct: 322 LEEGQEVKVKVLEVNEEEKRISLSIKALEEAPAEEEDRREEYRQYELPEEET 373
>gnl|CDD|216868 pfam02084, Bindin, Bindin.
Length = 239
Score = 27.9 bits (62), Expect = 3.4
Identities = 8/15 (53%), Positives = 13/15 (86%)
Query: 48 IFTYLEEEEEEEEED 62
+ + ++EEEEEEE+D
Sbjct: 154 VLSAMQEEEEEEEQD 168
>gnl|CDD|219256 pfam06991, Prp19_bind, Splicing factor, Prp19-binding domain.
This family represents the C-terminus (approximately
300 residues) of proteins that are involved as binding
partners for Prp19 as part of the nuclear pore complex.
The family in Drosophila is necessary for pre-mRNA
splicing, and the human protein has been found in
purifications of the spliceosome. In the past this
family was thought, erroneously, to be associated with
microfibrillin.
Length = 277
Score = 28.0 bits (62), Expect = 3.5
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 57 EEEEEDDKEEERVEREEEEEEEDDEEE 83
E EEED+ EE E EEEEE D E++
Sbjct: 6 ELEEEDESGEEEEEESEEEEETDSEDD 32
Score = 27.6 bits (61), Expect = 4.9
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEE 84
E E E EE+D+ E E E EEEEE D E++
Sbjct: 1 ETEVLELEEEDESGEEEEEESEEEEETDSEDD 32
Score = 27.2 bits (60), Expect = 8.0
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 14/61 (22%)
Query: 53 EEEEEEEEEDDKEEERVER--------------EEEEEEEDDEEEERFEREEEEERRKVT 98
EEE EEEEE D E++ R +E E E E+ E + + E RK
Sbjct: 18 EEESEEEEETDSEDDMEPRLKPVFTRKKDRITIQEREREAAKEKALEEEAKRKAEERKRE 77
Query: 99 T 99
T
Sbjct: 78 T 78
>gnl|CDD|223068 PHA03384, PHA03384, early DNA-binding protein E2A; Provisional.
Length = 445
Score = 28.1 bits (63), Expect = 3.5
Identities = 19/107 (17%), Positives = 34/107 (31%), Gaps = 20/107 (18%)
Query: 35 SPRYLDNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFE------- 87
+S Y S + E + ++ R E++EEEE E
Sbjct: 3 GRGSSSDSPYSSD-------DSPSLEPPELPPKKKGRRRVSPVEEEEEEEEAEVVAVGFS 55
Query: 88 ------REEEEERRKVTTYSENRQKTVEICPEAVKIPPSAATILTKW 128
++ +R V E + + EA P + + +KW
Sbjct: 56 YPPVRISRGKDGKRPVRPLKEEKDSEKKASTEAAVRNPLSDPLESKW 102
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 28.2 bits (63), Expect = 3.5
Identities = 14/61 (22%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 46 SGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREE-EEERRKVTTYSENR 104
+G+ +L +++ E+E++ E E+ +++E+ E +++ E EE + ++K+ Y + +
Sbjct: 63 TGVKDFLSDQKPEDEKELSASSL-EAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEK 121
Query: 105 Q 105
Q
Sbjct: 122 Q 122
>gnl|CDD|184416 PRK13955, mscL, large-conductance mechanosensitive channel;
Provisional.
Length = 130
Score = 27.5 bits (61), Expect = 3.5
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 53 EEEEEEEEEDDKEEE 67
EE+EEE E KEEE
Sbjct: 99 EEKEEEIPEPTKEEE 113
>gnl|CDD|219009 pfam06404, PSK, Phytosulfokine precursor protein (PSK). This
family consists of several plant specific
phytosulfokine precursor proteins. Phytosulfokines, are
active as either a pentapeptide or a C-terminally
truncated tetrapeptide. These compounds were first
isolated because of their ability to stimulate cell
division in somatic embryo cultures of Asparagus
officinalis.
Length = 74
Score = 26.2 bits (58), Expect = 3.8
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 56 EEEEEEDDKEEERVEREEEEEE-EDDEEEERFER 88
E + + E +V+ +E E E + EEE R
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEECLMR 57
Score = 26.2 bits (58), Expect = 5.1
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEE 82
E + E + + + E E E E +EE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
>gnl|CDD|193541 cd05665, M20_Acy1_IAAspH_bact, M20 Peptidases Aminoacyclase-1
indole-3-acetic-L-aspartic acid hydrolase from bacteria
and archaea. Peptidase M20 family, Bacterial and
archaeal Aminoacyclase-1 indole-3-acetic-L-aspartic acid
hydrolase (IAA-Asp hydrolase; IAAspH; IAAH; IAA
amidohydrolase; EC 3.5.1.-) subfamily. IAAspH hydrolyzes
indole-3-acetyl-N-aspartic acid (IAA or auxin) to
indole-3-acetic acid. Genes encoding IAA-amidohydrolases
were first cloned from Arabidopsis; ILR1, IAR3, ILL1 and
ILL2 encode active IAA- amino acid hydrolases, and three
additional amidohydrolase-like genes (ILL3, ILL5, ILL6)
have been isolated. In higher plants, the growth
regulator indole-3-acetic acid (IAA or auxin) is found
both free and conjugated via amide bonding to a variety
of amino acids and peptides, and via an ester linkage to
carbohydrates. IAA-Asp conjugates are involved in
homeostatic control, protection, storing and subsequent
use of free IAA. IAA-Asp is also found in some plants as
a unique intermediate for entering into IAA
non-decarboxylative oxidative pathway. IAA
amidohydrolase cleaves the amide bond between the auxin
and the conjugated amino acid. Enterobacter agglomerans
IAAspH has very strong enzyme activity and substrate
specificity towards IAA-Asp, although its substrate
affinity is weaker compared to Arabidopsis enzymes of
the ILR1 gene family. Enhanced IAA-hydrolase activity
has been observed during clubroot disease in Chinese
cabbage.
Length = 415
Score = 28.3 bits (64), Expect = 3.9
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 139 FL--SKLDVQFVWVPSHVGIAGNE 160
FL +KLDV F V +H G A E
Sbjct: 213 FLATTKLDVTFTGVSAHAGGAPEE 236
>gnl|CDD|235244 PRK04182, PRK04182, cytidylate kinase; Provisional.
Length = 180
Score = 27.5 bits (62), Expect = 3.9
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 66 EERVER--EEEEEEEDDEEEERFEREEEEERR 95
E R ER E E ++ EE EREE E +R
Sbjct: 103 EVRAERIAEREGISVEEALEETIEREESEAKR 134
>gnl|CDD|223041 PHA03321, PHA03321, tegument protein VP11/12; Provisional.
Length = 694
Score = 28.4 bits (63), Expect = 3.9
Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 9/54 (16%)
Query: 50 TYLEEEEEEEEEDDKEEERVEREEEEEEEDDEE---------EERFEREEEEER 94
YLE +++ + D E D++ EE E R
Sbjct: 540 PYLEPDDDRFDRRDGAAAAATSHPREAPAPDDDPIYEGVSDSEEPVYEEIPTPR 593
>gnl|CDD|227250 COG4913, COG4913, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 1104
Score = 28.4 bits (63), Expect = 4.1
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 58 EEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTY-SENRQKTVEICPEAVK 116
E+ +D + ER+E + ++ D R R EE +++ E+ E+ E
Sbjct: 764 EQHDDIVDIERIEHRRQLQKRIDAVNARLRRLREEIIGRMSDAKKEDTAALSEVGAELDD 823
Query: 117 IPPSAATILTKWPDDIQNFLILFLSKLDV 145
IP A + T D + FL F L+
Sbjct: 824 IPEYLARLQTLTEDALPEFLARFQELLNR 852
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 548
Score = 28.3 bits (63), Expect = 4.1
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEER-----RKVTTYSENRQKT 107
+ E E E + +EE+ + + E + E E R R+ T E ++++
Sbjct: 282 KAETRREAEQAEILAEQAIQEEKAQAEQEVQHAKALEAREMRVGLIERQKETELEPQERS 341
Query: 108 VEI 110
I
Sbjct: 342 YFI 344
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 28.2 bits (64), Expect = 4.2
Identities = 16/42 (38%), Positives = 29/42 (69%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
LE E+ EEE +K+E+ +E++++E E+ +EE E E+ +E
Sbjct: 102 LELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQE 143
Score = 27.8 bits (63), Expect = 4.9
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 52 LEEE-EEEEEEDDKEEERVEREEE----EEEEDDEEEERFEREEEEERRKVTTYSENRQK 106
E+E E E K E+R+ ++EE + E ++ EE E++E+E +K E +++
Sbjct: 73 FEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQEL-EKKEE 131
Query: 107 TVE 109
+E
Sbjct: 132 ELE 134
Score = 27.0 bits (61), Expect = 7.9
Identities = 14/55 (25%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 56 EEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEI 110
++EE D++ E +E+ EEE E ++E+ E++++E +K E ++ ++
Sbjct: 92 LQKEENLDRKLELLEKREEELE---KKEKELEQKQQELEKKEEELEELIEEQLQE 143
>gnl|CDD|227509 COG5182, CUS1, Splicing factor 3b, subunit 2 [RNA processing and
modification].
Length = 429
Score = 28.0 bits (62), Expect = 4.2
Identities = 14/57 (24%), Positives = 18/57 (31%), Gaps = 7/57 (12%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEE-------ERRKVTTYSE 102
E EE +E+ E E+ EE DD E KVT +
Sbjct: 361 EAEEIYNDEEQYTRPVYENEDFEERVDDVSNGGLAEFAPAAVEVAPKEDAKVTKRGK 417
>gnl|CDD|218228 pfam04720, DUF506, Protein of unknown function (DUF506). Family of
uncharacterized plant proteins.
Length = 218
Score = 27.8 bits (62), Expect = 4.2
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 48 IFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKV-TTYSENRQK 106
+ +LE+ E E++ + +EE+EED E+ + +E + T Y E ++
Sbjct: 5 VQGFLEDGNETVEDESFSGSGDDSSDEEDEEDSSSEDNGDVSDELKSLLECTLYRERYRR 64
Query: 107 TVE 109
++E
Sbjct: 65 SLE 67
>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 157
Score = 27.2 bits (61), Expect = 4.3
Identities = 15/85 (17%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 33 IDSPRYLDNSGYDSGIFTYLEEEEEEEEED-DKEEERVEREEEE---------EEEDDEE 82
+D + L S LE+E ++ + + K+E+ +++EE++ EE +
Sbjct: 21 VDVQKVLSESPAGKAAQKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAK 80
Query: 83 EERFEREEEEERRKVTTYSENRQKT 107
++ +++++E ++K + Q+
Sbjct: 81 QQELQQKQQELQQKQQAAQQELQQK 105
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 28.1 bits (63), Expect = 4.3
Identities = 17/60 (28%), Positives = 24/60 (40%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEIC 111
LEE EE EE + E +E E E + E E E + R ++ E R +
Sbjct: 243 LEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEA 302
>gnl|CDD|213395 cd12152, F1-ATPase_delta, mitochondrial ATP synthase delta subunit.
The F-ATPase is found in bacterial plasma membranes,
mitochondrial inner membranes and in chloroplast
thylakoid membranes. It has also been found in the
archaea Methanosarcina barkeri. It uses a proton
gradient to drive ATP synthesis and hydrolyzes ATP to
build the proton gradient. The extrinisic membrane
domain, F1, is composed of alpha, beta, gamma, delta,
and epsilon subunits with a stoichiometry of 3:3:1:1:1.
Alpha and beta subunit form the globular catalytic
moiety, a hexameric ring of alternating subunits. Gamma,
delta and epsilon subunits form a stalk, connecting F1
to F0, the integral membrane proton translocating
domain. In bacteria, which is lacking a eukaryotic
epsilon subunit homolog, this subunit is called the
epsilon subunit.
Length = 123
Score = 27.1 bits (61), Expect = 4.4
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
+E E E+ D E E EE ++ER + E
Sbjct: 78 DEAERPEDIDVERAEEALERAEERLAQAKDEREKARAEAA 117
>gnl|CDD|148682 pfam07222, PBP_sp32, Proacrosin binding protein sp32. This family
consists of several mammalian specific proacrosin
binding protein sp32 sequences. sp32 is a sperm specific
protein which is known to bind with with 55- and 53-kDa
proacrosins and the 49-kDa acrosin intermediate. The
exact function of sp32 is unclear, it is thought however
that the binding of sp32 to proacrosin may be involved
in packaging the acrosin zymogen into the acrosomal
matrix.
Length = 243
Score = 27.7 bits (61), Expect = 4.5
Identities = 14/42 (33%), Positives = 27/42 (64%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
L + +E ++ K EE+ +EE+EEEE +EE ++ E + ++
Sbjct: 202 LLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
Score = 27.7 bits (61), Expect = 5.2
Identities = 10/41 (24%), Positives = 26/41 (63%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
+E+ + ++ +E + E ++ +EE+++EE E ++EE +
Sbjct: 199 QEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQ 239
Score = 26.9 bits (59), Expect = 8.5
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKT 107
L + + K+E+ + + +E +E EE++ + E+EEE + E Q T
Sbjct: 186 LGGSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQGT 241
>gnl|CDD|227458 COG5129, MAK16, Nuclear protein with HMG-like acidic region
[General function prediction only].
Length = 303
Score = 27.7 bits (61), Expect = 4.5
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 24/84 (28%)
Query: 51 YLEEEEEEEEE-----DDKEEERVEREE--------------EEEEEDDEEEERFEREEE 91
Y+EEEEE + E DD E+E+ ++++ E EEE+ E E E E+E
Sbjct: 203 YVEEEEESDTELEAVTDDSEKEKTKKKDLEKWLGSDQSMETSESEEEESSESESDEDEDE 262
Query: 92 E-----ERRKVTTYSENRQKTVEI 110
+ +RK ++R+ + I
Sbjct: 263 DNKGKIRKRKTDDAKKSRKPHIHI 286
Score = 26.9 bits (59), Expect = 9.2
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 61 EDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKV 97
E +K ++ ER EEEEE D E E + E+E+ K
Sbjct: 192 EREKRQDEKERYVEEEEESDTELEAVTDDSEKEKTKK 228
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 28.0 bits (62), Expect = 4.6
Identities = 8/42 (19%), Positives = 19/42 (45%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEER 94
+E + E + E ER ++ EE+ D ++++ +
Sbjct: 809 KEIKIESPSVETEGERCTIKQREEKGIDAPAILNVKKKKPYK 850
>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain,
potential nuclease [General function prediction only].
Length = 290
Score = 28.0 bits (62), Expect = 4.6
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFERE----EEEERRKVTTYSENRQKTV 108
E+ EE ++E ++ + +E E E EE E +R E E EE ++ + +++
Sbjct: 142 EKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWD 201
Query: 109 EICPE 113
E+ P
Sbjct: 202 ELEPG 206
>gnl|CDD|217940 pfam04177, TAP42, TAP42-like family. The TOR signalling pathway
activates a cell-growth program in response to
nutrients. TIP41 (pfam04176) interacts with TAP42 and
negatively regulates the TOR signaling pathway.
Length = 335
Score = 27.6 bits (62), Expect = 4.6
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERR 95
E+E + + EEEE+D+++EE + E + R
Sbjct: 285 EQEMKRGGVPQGGGEAAASAEEEEDDEDDEEDDDEETLKARA 326
>gnl|CDD|218896 pfam06098, Radial_spoke_3, Radial spoke protein 3. This family
consists of several radial spoke protein 3 (RSP3)
sequences. Eukaryotic cilia and flagella present in
diverse types of cells perform motile, sensory, and
developmental functions in organisms from protists to
humans. They are centred by precisely organised,
microtubule-based structures, the axonemes. The axoneme
consists of two central singlet microtubules, called the
central pair, and nine outer doublet microtubules. These
structures are well-conserved during evolution. The
outer doublet microtubules, each composed of A and B
sub-fibres, are connected to each other by nexin links,
while the central pair is held at the centre of the
axoneme by radial spokes. The radial spokes are T-shaped
structures extending from the A-tubule of each outer
doublet microtubule to the centre of the axoneme. Radial
spoke protein 3 (RSP3), is present at the proximal end
of the spoke stalk and helps in anchoring the radial
spoke to the outer doublet. It is thought that radial
spokes regulate the activity of inner arm dynein through
protein phosphorylation and dephosphorylation.
Length = 288
Score = 27.7 bits (62), Expect = 4.6
Identities = 18/46 (39%), Positives = 21/46 (45%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKV 97
LEEEE E + + R E E EE R EE+ERRK
Sbjct: 149 LEEEELAELRQQQRQFEQRRNAELAETQRLEEAERRRREEKERRKK 194
>gnl|CDD|221323 pfam11931, DUF3449, Domain of unknown function (DUF3449). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 181 to 207 amino acids in length. This domain
has two conserved sequence motifs: PIP and CEICG. The
domain carries a zinc-finger domain of the C2H2-type.
Length = 187
Score = 27.2 bits (61), Expect = 4.8
Identities = 5/32 (15%), Positives = 15/32 (46%)
Query: 49 FTYLEEEEEEEEEDDKEEERVEREEEEEEEDD 80
T E + +E + E ++ +++E++
Sbjct: 31 LTEEERQASADESSEDASEDGSDDDSDDDEEE 62
Score = 26.5 bits (59), Expect = 9.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEE 83
EEE + D+ E+ E +++ +DDEEE
Sbjct: 33 EEERQASADESSEDASEDGSDDDSDDDEEE 62
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein. Members of this
protein family belong to a conserved gene four-gene
neighborhood found sporadically in a phylogenetically
broad range of bacteria: Nocardia farcinica,
Symbiobacterium thermophilum, and Streptomyces
avermitilis (Actinobacteria), Geobacillus kaustophilus
(Firmicutes), Azoarcus sp. EbN1 and Ralstonia
solanacearum (Betaproteobacteria). Proteins in this
family average over 1400 amino acids in length
[Hypothetical proteins, Conserved].
Length = 1353
Score = 28.2 bits (63), Expect = 4.8
Identities = 7/40 (17%), Positives = 12/40 (30%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
+E E EEE + E E + + +
Sbjct: 546 ADELTRERAALRLAEEVLEEERDALRTERERLEQGTDRDP 585
>gnl|CDD|220535 pfam10037, MRP-S27, Mitochondrial 28S ribosomal protein S27.
Members of this family of small ribosomal proteins
possess one of three conserved blocks of sequence found
in proteins that stimulate the dissociation of guanine
nucleotides from G-proteins, leaving open the
possibility that MRP-S27 might be a functional partner
of GTP-binding ribosomal proteins.
Length = 417
Score = 27.8 bits (62), Expect = 4.8
Identities = 10/50 (20%), Positives = 22/50 (44%)
Query: 58 EEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKT 107
EE E+E +E E+ ++ E + + +++ R + + R T
Sbjct: 365 EERLPTIEKEDLELYEQRQQLWFFENRKLWQRKKKLREQADEEYQQRHAT 414
>gnl|CDD|236873 PRK11186, PRK11186, carboxy-terminal protease; Provisional.
Length = 667
Score = 27.9 bits (63), Expect = 4.8
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 49 FTYLEEEEEE--EEEDDKEEERVEREEEEEEEDDEEE------ERFEREEEE 92
F Y+ E+ E+D E E+E ++D+ + ERF+RE ++
Sbjct: 579 FQYINEDIARYKAEKDKNIVSLNYAEREKENDEDDAKRLARLNERFKREGKK 630
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 28.2 bits (62), Expect = 4.9
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 44 YDSGIFTYLEEEEEEEEEDDKEE--ERVEREEEEEEEDDEEEERFEREEEEERRKVTTYS 101
YD +EE EE E++ EE E + E EE E++ EE E EE V
Sbjct: 1037 YDEENVEEIEENAEENVEENIEENIEEYDEENVEEIEENIEENIEENVEENVEENVEEIE 1096
Query: 102 ENRQKTVE 109
EN ++ VE
Sbjct: 1097 ENVEENVE 1104
Score = 27.8 bits (61), Expect = 5.6
Identities = 21/63 (33%), Positives = 30/63 (47%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEICPE 113
EE EE ++ EE VE EE E++ EE E EE + V EN ++ E E
Sbjct: 984 EENVEENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVE 1043
Query: 114 AVK 116
++
Sbjct: 1044 EIE 1046
Score = 27.8 bits (61), Expect = 6.1
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVE 109
EE +EE ++ EE +E EE E++ EE E EE E EN ++ E
Sbjct: 1062 EEYDEENVEEIEENIEENIEENVEENVEENVEEIEENVEENVEENAEENAEENAE 1116
Score = 27.4 bits (60), Expect = 7.9
Identities = 22/60 (36%), Positives = 27/60 (45%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEICPE 113
EE EE ++ EE VE EE E++ EE E EE V Y E + VE E
Sbjct: 976 EENVEENVEENVEENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVE 1035
>gnl|CDD|233870 TIGR02442, Cob-chelat-sub, cobaltochelatase subunit.
Cobaltochelatase is responsible for the insertion of
cobalt into the corrin ring of coenzyme B12 during its
biosynthesis. Two versions have been well described.
CbiK/CbiX is a monomeric, anaerobic version which acts
early in the biosynthesis (pfam06180). CobNST is a
trimeric, ATP-dependent, aerobic version which acts late
in the biosynthesis (TIGR02257/TIGR01650/TIGR01651). A
number of genomes (actinobacteria, cyanobacteria,
betaproteobacteria and pseudomonads) which apparently
biosynthesize B12, encode a cobN gene but are
demonstrably lacking cobS and cobT. These genomes do,
however contain a homolog (modelled here) of the
magnesium chelatase subunits BchI/BchD family. Aside
from the cyanobacteria (which have a separate magnesium
chelatase trimer), these species do not make chlorins,
so do not have any use for a magnesium chelatase.
Furthermore, in nearly all cases the members of this
family are proximal to either CobN itself or other genes
involved in cobalt transport or B12 biosynthesis.
Length = 633
Score = 28.1 bits (63), Expect = 4.9
Identities = 9/39 (23%), Positives = 20/39 (51%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEE 92
E+ + ++E D EE+ E + E+ D+ E++ +
Sbjct: 315 EQPQGKDEKDLEEKPEEPGPDPEKPDEGEDDAEQSGPRG 353
>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional.
Length = 487
Score = 27.8 bits (62), Expect = 5.1
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 46 SGIFTYLEEEEEEEEEDDKEEERV-EREEEEEEEDDEEEERFER 88
SG F EE E K E E +EE++DD++E + R
Sbjct: 440 SGDFIEGEEMEPLFSMGGKLEMPGSESVSDEEDDDDDDEVLYRR 483
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 27.7 bits (61), Expect = 5.1
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 53 EEEEEEEEEDDKEEERVERE---------EEEEEEDDEEEERFEREEEEERRKVTTYSEN 103
E ++ E E+ E ++ + E + ++E E+ E +E E ++K +E+
Sbjct: 277 ENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKREPVAED 336
Query: 104 RQKTVE 109
QKT
Sbjct: 337 LQKTKP 342
>gnl|CDD|226501 COG4014, COG4014, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 97
Score = 26.4 bits (58), Expect = 5.2
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 39 LDNSG--YDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEE 78
LD++ Y +++ E +EE ++ +E VER +E+EE
Sbjct: 41 LDSTDLWYREHYLEVVDKSEIKEEREEDIDEVVERIRKEKEE 82
>gnl|CDD|218517 pfam05236, TAF4, Transcription initiation factor TFIID component
TAF4 family. This region of similarity is found in
Transcription initiation factor TFIID component TAF4.
Length = 255
Score = 27.4 bits (61), Expect = 5.3
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFE--REEEEERRK 96
++++EEE+ + E R E E+ E+ +++ E + E EE R
Sbjct: 119 AQKQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEETRH 163
>gnl|CDD|219311 pfam07149, Pes-10, Pes-10. This family consists of several
Caenorhabditis elegans pes-10 and related proteins.
Members of this family are typically around 400 residues
in length. The function of this family is unknown.
Length = 370
Score = 27.5 bits (61), Expect = 5.4
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 44 YDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEE 91
D + + EE+E+EEE DK + +E E E +EER E E
Sbjct: 158 VDQLLKDEVLEEDEQEEEADKLLDNLEEHSETESGIFTDEERDEGNYE 205
Score = 27.5 bits (61), Expect = 6.9
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 56 EEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSE 102
+E EED++EEE + + EE + E F EE +E E
Sbjct: 164 DEVLEEDEQEEEADKLLDNLEEHSETESGIFTDEERDEGNYEWAVME 210
>gnl|CDD|214607 smart00307, ILWEQ, I/LWEQ domain. Thought to possess an F-actin
binding function.
Length = 200
Score = 27.3 bits (61), Expect = 5.4
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
+ +EE+EEE+D + + + +E E E + E E E R+K
Sbjct: 144 MIFDEEQEEEEDFSKLSLHEGKTQEMEQQVEILKLENELEAARKK 188
>gnl|CDD|224308 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase subunit E [Energy
production and conversion].
Length = 194
Score = 27.3 bits (61), Expect = 5.4
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 63 DKEEERVEREEEEEEED--DEEEERFEREEEEERRKVTTYSENRQKTVE 109
+K +++ RE EEE E+ +E E E+ +EE +R+ E + E
Sbjct: 5 EKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAE 53
Score = 27.0 bits (60), Expect = 8.1
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFER-----EEEEERRKVTTYS----E 102
+ E EEE E+ EE R E E+ +EE E EE E E+E ER + S E
Sbjct: 11 ILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALLE 70
Query: 103 NRQKTVEICPEAVK 116
R+K +E E ++
Sbjct: 71 ARRKLLEAKEEILE 84
>gnl|CDD|219761 pfam08243, SPT2, SPT2 chromatin protein. This family includes the
Saccharomyces cerevisiae protein SPT2 which is a
chromatin protein involved in transcriptional
regulation.
Length = 116
Score = 26.8 bits (59), Expect = 5.4
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
Query: 34 DSPRYLDNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
R + + +E E + KEE R R E DE E E EEE+
Sbjct: 56 GRKRSYYDRYDEDDALDNMEATFMEIQ---KEERRSARMARLE---DERELAREEEEEKR 109
Query: 94 RRK 96
++K
Sbjct: 110 KKK 112
>gnl|CDD|151958 pfam11521, TFIIE-A_C-term, C-terminal general transcription
factor TFIIE alpha. TFIIE is compiled of two subunits,
alpha and beta. This family of proteins are the C
terminal domain of the alpha subunit of the protein
which is the largest subunit and contains several
functional domains which are important for basal
transcription and cell growth. The C terminal end of
the protein binds directly to the amino-terminal PH
domain of p62/Tfb1 (of IIH) which is involved in the
recruitment of the general transcription factor IIH to
the transcription preinitiation complex. P53 competes
for the same binding site as TFIIE alpha which shows
their structural similarity. Like p53, TFIIE alpha
336-439 can activate transcription in vivo.
Length = 86
Score = 26.3 bits (58), Expect = 5.5
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEE 92
E + E +DD + +EE+D+E++ FE E+E
Sbjct: 2 ESDTSESDDDSPSPEPPAGQSVDEEEDDEDDEFEEVEDE 40
>gnl|CDD|225887 COG3351, FlaD, Putative archaeal flagellar protein D/E [Cell
motility and secretion].
Length = 214
Score = 27.5 bits (61), Expect = 5.7
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKV 97
+ ++ +D+ EE ER E+ +E E+ EE E+ KV
Sbjct: 31 PIQAKKSDDELVEELPERYEQTKENSLIEKVDSIEEEISEKEKV 74
>gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function
unknown].
Length = 984
Score = 27.9 bits (62), Expect = 5.7
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 43 GYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEE 78
+ L++ E +EEE EE ++ +EE EE
Sbjct: 757 AEAYELSASLDQRELKEEELALLEEAIDALDEEVEE 792
Score = 27.5 bits (61), Expect = 6.5
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKV 97
+E+ ED+ EEE +R ++EEE +E E + + +
Sbjct: 393 DEKRLFEDEAEEEARQRLADDEEEVRAGDEAREEKIAANSQVI 435
>gnl|CDD|218010 pfam04293, SpoVR, SpoVR like protein. Bacillus subtilis stage V
sporulation protein R is involved in spore cortex
formation. Little is known about cortex biosynthesis,
except that it depends on several sigma E controlled
genes, including spoVR.
Length = 427
Score = 27.5 bits (62), Expect = 5.7
Identities = 8/41 (19%), Positives = 18/41 (43%)
Query: 56 EEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
EEE+ ++ EE ++ + + + EE R++
Sbjct: 178 EEEKARQEEREEYLQSQVNDLWRTIPPQREKLEEERARRKR 218
>gnl|CDD|185582 PTZ00373, PTZ00373, 60S Acidic ribosomal protein P2; Provisional.
Length = 112
Score = 26.4 bits (58), Expect = 5.7
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDD 80
+ E KEE++ E EEEEEDD
Sbjct: 82 ATAGAKAEAKKEEKKEE---EEEEEDD 105
Score = 26.0 bits (57), Expect = 8.4
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 58 EEEEDDKEEERVEREEEEEEEDDE 81
E ++ E++EEEEEE+D+
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 27.7 bits (62), Expect = 5.9
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 11/64 (17%)
Query: 53 EEEEEEEEEDDKEEERVERE-----------EEEEEEDDEEEERFEREEEEERRKVTTYS 101
E+ +++ ++ R ER+ +E + + EE+ E E+EE ++V
Sbjct: 661 VTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQSVQETEQEERVQQVQPRR 720
Query: 102 ENRQ 105
+ RQ
Sbjct: 721 KQRQ 724
>gnl|CDD|221821 pfam12871, PRP38_assoc, Pre-mRNA-splicing factor 38-associated
hydrophilic C-term. This domain is a hydrophilic region
found at the C-terminus of plant and metazoan
pre-mRNA-splicing factor 38 proteins. The function is
not known.
Length = 97
Score = 26.3 bits (58), Expect = 5.9
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQK 106
L+EEEE EEE+D EE R + E + + R R +R R +
Sbjct: 10 LDEEEESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRRRRDR 64
>gnl|CDD|220112 pfam09110, HAND, HAND. The HAND domain adopts a secondary
structure consisting of four alpha helices, three of
which (H2, H3, H4) form an L-like configuration. Helix
H2 runs antiparallel to helices H3 and H4, packing
closely against helix H4, whilst helix H1 reposes in the
concave surface formed by these three helices and runs
perpendicular to them. The domain confers DNA and
nucleosome binding properties to the protein.
Length = 109
Score = 26.5 bits (59), Expect = 5.9
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFERE 89
E+EEE E + E+E+++ E EE++EE++R E
Sbjct: 72 EDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQRLLEE 108
Score = 26.1 bits (58), Expect = 6.9
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERR 95
++ + +++ EEER + + E+E+ D E E EEEE++R
Sbjct: 64 DDVGDGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQR 104
>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus
protein SURF-6 is shown to be a component of the
nucleolar matrix and has a strong binding capacity for
nucleic acids.
Length = 206
Score = 27.3 bits (61), Expect = 5.9
Identities = 9/48 (18%), Positives = 25/48 (52%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSE 102
+ E+ + K+++R E +++E+ + E EE E + +++ +
Sbjct: 13 RKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENA 60
>gnl|CDD|240285 PTZ00135, PTZ00135, 60S acidic ribosomal protein P0; Provisional.
Length = 310
Score = 27.3 bits (61), Expect = 6.0
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 64 KEEERVEREEEEEEEDDE 81
EEEEEE+D+
Sbjct: 286 AAAAAAAPAEEEEEEEDD 303
Score = 27.3 bits (61), Expect = 6.3
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 60 EEDDKEEERVEREEEEEEEDD 80
EEEEEEEDD
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
>gnl|CDD|191365 pfam05756, S-antigen, S-antigen protein. S-antigens are heat
stable proteins that are found in the blood of
individuals infected with malaria.
Length = 94
Score = 26.0 bits (57), Expect = 6.0
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 51 YLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEE 91
Y + +EE E E+D EE+ EE +DEE E + E
Sbjct: 57 YEDLQEEGEGENDDEED----SNSEESNNDEENGLIEGQGE 93
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 27.6 bits (62), Expect = 6.1
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEE 92
+ + EE +++ EE+ E EE +E+ +E E R E EEE
Sbjct: 354 QADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEE 391
>gnl|CDD|234776 PRK00478, scpA, segregation and condensation protein A/unknown
domain fusion protein; Provisional.
Length = 505
Score = 27.6 bits (61), Expect = 6.1
Identities = 23/94 (24%), Positives = 49/94 (52%), Gaps = 10/94 (10%)
Query: 30 LVLIDSPRY-LDNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDE-----EE 83
LVL+++ + L+ D ++ L + + + +E V+R++E+E+ E +E
Sbjct: 389 LVLVNNQKIDLEQKNDDEELYICLLDPTKIVNSQESPQEMVQRQQEQEQALKESIKQIQE 448
Query: 84 ER----FEREEEEERRKVTTYSENRQKTVEICPE 113
ER F++ EE ++K Y +R++ ++ PE
Sbjct: 449 ERAISNFQKREEYLKKKYGEYYLSREQYQKLTPE 482
>gnl|CDD|224160 COG1239, ChlI, Mg-chelatase subunit ChlI [Coenzyme metabolism].
Length = 423
Score = 27.4 bits (61), Expect = 6.1
Identities = 9/41 (21%), Positives = 12/41 (29%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEER 94
E +E E + + E E D E ER
Sbjct: 354 EVTTDEGESASASLADKPKLGELEAFDRIARARGEESSSER 394
>gnl|CDD|223164 COG0086, RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD
subunit [Transcription].
Length = 808
Score = 27.6 bits (62), Expect = 6.2
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDD-EEEERFEREEEEERRKVTTYSENRQKTVEIC 111
E E+E++E + E V + + EE D ER E E + + ++I
Sbjct: 595 EAEDEKDEIVIEAEGSVLKLILQYEEGDLTRTERNNIVEIIEVLGIEALRNAIIEEIKIT 654
Query: 112 PE 113
E
Sbjct: 655 LE 656
>gnl|CDD|206063 pfam13892, DBINO, DNA-binding domain. DBINO is a DNA-binding
domain found on global transcription activator SNF2L1
proteins and chromatin re-modelling proteins.
Length = 140
Score = 26.8 bits (60), Expect = 6.2
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 8/44 (18%)
Query: 63 DKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQK 106
K+ E+ ERE + E E E+ ++EEE RQ+
Sbjct: 78 WKKNEKEERELRKRAE-KEALEQAKKEEELRE-------AKRQQ 113
>gnl|CDD|226907 COG4530, COG4530, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 129
Score = 26.8 bits (59), Expect = 6.3
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDD 80
EEEEE +E D E E VE E+ +DD
Sbjct: 52 EEEEEVVKEVDAENEEVEVVSLEDADDD 79
>gnl|CDD|216269 pfam01056, Myc_N, Myc amino-terminal region. The myc family
belongs to the basic helix-loop-helix leucine zipper
class of transcription factors, see pfam00010. Myc forms
a heterodimer with Max, and this complex regulates cell
growth through direct activation of genes involved in
cell replication. Mutations in the C-terminal 20
residues of this domain cause unique changes in the
induction of apoptosis, transformation, and G2 arrest.
Length = 329
Score = 27.6 bits (61), Expect = 6.3
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 41 NSGYDSGIFTYLEEEEEEEEEDDKEEE 67
NS SG + EE+EEEEEE+++EEE
Sbjct: 217 NSSSSSGSDSESEEDEEEEEEEEEEEE 243
Score = 27.2 bits (60), Expect = 7.3
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 72 EEEEEEEDDEEEERFEREEEEERRKVTTYSENRQK 106
+ E EED+EEEE E EEEEE VT
Sbjct: 224 SDSESEEDEEEEE--EEEEEEEIDVVTVEKRRSSS 256
>gnl|CDD|222508 pfam14033, DUF4246, Protein of unknown function (DUF4246). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and fungi.
Proteins in this family are typically between 392 and
644 amino acids in length.
Length = 496
Score = 27.6 bits (62), Expect = 6.4
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 56 EEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKV 97
E +E + EE + E E+E+ ED E + EERRK
Sbjct: 262 EYHPKEKEPEEPKPEPGEDEDYEDYWERLEEYLDWREERRKA 303
>gnl|CDD|177755 PLN00152, PLN00152, DNA-directed RNA polymerase; Provisional.
Length = 130
Score = 26.8 bits (59), Expect = 6.5
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 44 YDSGIFTYLEEEEEEEEEDDKEEERVEREEEEE-EEDDEEEERFEREEEEERRKVTTY 100
Y+ Y +E E E E+ EE+ +E E E++ E+E + RK T Y
Sbjct: 2 YNDMDMGYEDEPSEPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQEPVQRPRKTTPY 59
>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 27.7 bits (62), Expect = 6.7
Identities = 11/68 (16%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 37 RYLDNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
++L+ + + + +E EE R + E+ E+ + +EE ++E ++ +K
Sbjct: 441 KFLEEEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEV-KKEVPKKVKK 499
Query: 97 VTTYSENR 104
+
Sbjct: 500 IPEVDTYL 507
>gnl|CDD|150531 pfam09871, DUF2098, Uncharacterized protein conserved in archaea
(DUF2098). This domain, found in various hypothetical
prokaryotic proteins, has no known function.
Length = 91
Score = 26.1 bits (58), Expect = 6.7
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 31 VLIDSPRYLDNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEE 84
VL+DS + Y E++EE EE+ ++ ER+++EEE E+ D
Sbjct: 32 VLLDSTDLYYRTDYLEVTDKVKEKKEEREEDKEELIERIKKEEETFEDVDLGSA 85
>gnl|CDD|218055 pfam04386, SspB, Stringent starvation protein B. Escherichia coli
stringent starvation protein B (SspB), is thought to
enhance the specificity of degradation of tmRNA-tagged
proteins by the ClpXP protease. The tmRNA tag, also
known as ssrA, is an 11-aa peptide added to the C
terminus of proteins stalled during translation, targets
proteins for degradation by ClpXP and ClpAP. SspB a
cytoplasmic protein that specifically binds to residues
1-4 and 7 of the tag. Binding of SspB enhances
degradation of tagged proteins by ClpX, and masks
sequence elements important for ClpA interactions,
inhibiting degradation by ClpA. However, more recent
work has cast doubt on the importance of SspB in
wild-type cells. SspB is encoded in an operon whose
synthesis is stimulated by carbon, amino acid, and
phosphate starvation. SspB may play a special role
during nutrient stress, for example by ensuring rapid
degradation of the products of stalled translation,
without causing a global increase in degradation of all
ClpXP substrates.
Length = 153
Score = 26.8 bits (60), Expect = 6.7
Identities = 9/35 (25%), Positives = 21/35 (60%)
Query: 50 TYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEE 84
E EE +EEE++++++ + E+E+ E + +
Sbjct: 108 LQFEPEEADEEEEEEDDDADDSPEDEDPEPKDPPK 142
>gnl|CDD|236136 PRK07946, PRK07946, putative monovalent cation/H+ antiporter
subunit C; Reviewed.
Length = 163
Score = 26.9 bits (60), Expect = 6.7
Identities = 10/41 (24%), Positives = 13/41 (31%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERR 95
D + E + E D E FER EE +
Sbjct: 122 GLASAAPDHDRSDDPETGRQTAEGDAFGPEEFERPLEEAKD 162
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 26.8 bits (60), Expect = 6.8
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 48 IFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
+ +++ EEE+EE +K +E + E E+ +EEE R+ EE+R
Sbjct: 125 LEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEE----RQIEEKRHA 169
>gnl|CDD|233004 TIGR00513, accA, acetyl-CoA carboxylase, carboxyl transferase,
alpha subunit. The enzyme acetyl-CoA carboxylase
contains a biotin carboxyl carrier protein or domain, a
biotin carboxylase, and a carboxyl transferase. This
model represents the alpha chain of the carboxyl
transferase for cases in which the architecture of the
protein is as in E. coli, in which the
carboxyltransferase portion consists of two
non-identical subnits, alpha and beta [Fatty acid and
phospholipid metabolism, Biosynthesis].
Length = 316
Score = 27.5 bits (61), Expect = 6.9
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 51 YLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKV 97
YL+ E+ E + K E R +E+ + EE ER E+ E +K+
Sbjct: 5 YLDFEKPIAELEAKIESLRARSRDEDVDLSEEIERLEKRSVELTKKI 51
>gnl|CDD|239285 cd02987, Phd_like_Phd, Phosducin (Phd)-like family, Phd
subfamily; Phd is a cytosolic regulator of G protein
functions. It specifically binds G protein betagamma
(Gbg)-subunits with high affinity, resulting in the
solubilization of Gbg from the plasma membrane. This
impedes the formation of a functional G protein trimer
(G protein alphabetagamma), thereby inhibiting G
protein-mediated signal transduction. Phd also inhibits
the GTPase activity of G protein alpha. Phd can be
phosphorylated by protein kinase A and G
protein-coupled receptor kinase 2, leading to its
inactivation. Phd was originally isolated from the
retina, where it is highly expressed and has been
implicated to play an important role in light
adaptation. It is also found in the pineal gland,
liver, spleen, striated muscle and the brain. The
C-terminal domain of Phd adopts a thioredoxin fold, but
it does not contain a CXXC motif. Phd interacts with G
protein beta mostly through the N-terminal helical
domain.
Length = 175
Score = 26.9 bits (60), Expect = 7.0
Identities = 10/34 (29%), Positives = 25/34 (73%)
Query: 62 DDKEEERVEREEEEEEEDDEEEERFEREEEEERR 95
D ++ ++++ E+E+++DDE++E F ++ E+R
Sbjct: 15 DWRKFKQLKESEQEDDDDDEDKEEFLQQYREQRM 48
>gnl|CDD|233148 TIGR00844, c_cpa1, na(+)/h(+) antiporter. The Monovalent
Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36) The
CPA1 family is a large family of proteins derived from
Gram-positive and Gram-negative bacteria, blue green
bacteria, yeast, plants and animals. Transporters from
eukaryotes have been functionally characterized, and all
of these catalyze Na+:H+ exchange. Their primary
physiological functions may be in (1) cytoplasmic pH
regulation, extruding the H+ generated during
metabolism, and (2) salt tolerance (in plants), due to
Na+ uptake into vacuoles. This model is specific for the
fungal members of this family [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 810
Score = 27.6 bits (61), Expect = 7.1
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 66 EERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVE 109
++ E + E E R ++ EEE++ Y+E+ Q +E
Sbjct: 616 DDVYTYENDSESIASSERRRIKKLREEEQQAYIAYTEDNQVIIE 659
>gnl|CDD|198151 smart01083, Cir_N, N-terminal domain of CBF1 interacting
co-repressor CIR. This is a 45 residue conserved
region at the N-terminal end of a family of proteins
referred to as CIRs (CBF1-interacting co-repressors).
CBF1 (centromere-binding factor 1) acts as a
transcription factor that causes repression by binding
specifically to GTGGGAA motifs in responsive promoters,
and it requires CIR as a co-repressor. CIR binds to
histone deacetylase and to SAP30 and serves as a linker
between CBF1 and the histone deacetylase complex.
Length = 37
Score = 24.4 bits (54), Expect = 7.2
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 67 ERVEREEEEEEEDDEEEERFEREEEEE 93
+RV + E++ EE+ ++ E +E E+E
Sbjct: 11 KRVWKAEQKAEEEKKKIEERRKEIEKE 37
>gnl|CDD|218274 pfam04801, Sin_N, Sin-like protein conserved region. Family of
higher eukaryotic proteins. SIN was identified as a
protein that interacts specifically with SXL (sex
lethal) in a yeast two-hybrid assay. The interaction is
mediated by one of the SXL RNA binding domains.
Length = 422
Score = 27.4 bits (61), Expect = 7.2
Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 48 IFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK--VTTYSENRQ 105
F YL+++++ ++E+D +E + +EE EEE + +F R E E++RK +Y+ ++
Sbjct: 135 SFQYLDKKDKRKKEEDTADEDEDPDEEAEEELKQVTVKFSRPETEKQRKRREQSYNFLQK 194
Query: 106 KTVE 109
K E
Sbjct: 195 KIAE 198
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 27.1 bits (60), Expect = 7.2
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREE-EEERRKVTTYSENRQKTVEIC 111
+E+EE E +E E EE +++ D E + + E V S+ + T I
Sbjct: 72 KEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHEDVIDLSDLKLATENII 131
Query: 112 PEAVKI 117
+ KI
Sbjct: 132 KDLKKI 137
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called
The RES complex, pre-mRNA retention and splicing
complex. Subunits of this complex are not essential for
viability of yeasts but they are required for efficient
splicing in vitro and in vivo. Furthermore,
inactivation of this complex causes pre-mRNA leakage
from the nucleus. Bud13 contains a unique,
phylogenetically conserved C-terminal region of unknown
function.
Length = 141
Score = 26.5 bits (59), Expect = 7.3
Identities = 17/43 (39%), Positives = 30/43 (69%), Gaps = 3/43 (6%)
Query: 55 EEEEEEEDDKEEERVEREEEEEE---EDDEEEERFEREEEEER 94
EE+ EE++ ++EE+ +EE+E+E ++EER +R EE E+
Sbjct: 15 EEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEK 57
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 27.2 bits (61), Expect = 7.4
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEEERFER 88
E++E+E +KE+ E+EEE EE E+ E ER
Sbjct: 107 EKKEKELSNKEKNLDEKEEELEELIAEQREELER 140
>gnl|CDD|189762 pfam00901, Orbi_VP5, Orbivirus outer capsid protein VP5.
cryoelectron microscopy indicates that VP5 is a trimer
implying that there are 360 copies of VP5 per virion.
Length = 507
Score = 27.3 bits (61), Expect = 7.5
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 12/61 (19%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEE----------EEDDEEEERFEREEEEERRKVTTYS 101
LE E++EEE +K +++ + E+ E EEEE E++ E + + +Y
Sbjct: 96 LEREQKEEEVREKHNKKIIEKFGEDLEEVYKFMKGEAKVEEEE--EKQMEILEKALKSYL 153
Query: 102 E 102
+
Sbjct: 154 K 154
>gnl|CDD|222927 PHA02774, PHA02774, E1; Provisional.
Length = 613
Score = 27.2 bits (61), Expect = 7.8
Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 20/99 (20%)
Query: 40 DNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEE--------EEEEDDEEEERF---ER 88
D SG F +E E E + +D+ E+ + + E + F E
Sbjct: 8 DPEEGGSGWF-LVEAEAECSDGEDELEDLFDTGSDISDLIDDAEVVQGGNSLALFHQQEA 66
Query: 89 EEEEE-----RRKVTTYSENRQKTVEICP--EAVKIPPS 120
EE+E+ +RK + S + ++ P EA+ + P
Sbjct: 67 EEDEQQIQALKRKYLS-SPEKSPVADLSPRLEAISLSPR 104
>gnl|CDD|227635 COG5325, COG5325, t-SNARE complex subunit, syntaxin [Intracellular
trafficking and secretion].
Length = 283
Score = 27.1 bits (60), Expect = 7.9
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTT 99
LEEEE+EE ++ +++ E+ E ++ E +EE + +
Sbjct: 155 LEEEEDEESLSSLGSQQTLQQQGLSNEELEYQQILITERDEEIKNLAR 202
>gnl|CDD|227447 COG5117, NOC3, Protein involved in the nuclear export of
pre-ribosomes [Translation, ribosomal structure and
biogenesis / Intracellular trafficking and secretion].
Length = 657
Score = 27.3 bits (60), Expect = 7.9
Identities = 11/54 (20%), Positives = 25/54 (46%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQK 106
E E + D K+E++ EE++ + +++ + E+E T E ++
Sbjct: 100 SEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQIDSEKERIASICTKIIEEPEE 153
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 27.4 bits (61), Expect = 7.9
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEE 92
E+EE+E+ + D E V+ +EE+EEED E EEE
Sbjct: 430 EDEEDEDGDGDVEMSAVDNDEEKEEEDKEAIPSTILEEEP 469
>gnl|CDD|150697 pfam10051, DUF2286, Uncharacterized protein conserved in archaea
(DUF2286). Members of this family of hypothetical
archaeal proteins have no known function.
Length = 141
Score = 26.6 bits (59), Expect = 8.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 48 IFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDE 81
+F Y++EE ++E + + EEEEEEE+ E
Sbjct: 108 VFPYIDEETKKELLEYAAQVTSGPEEEEEEEELE 141
>gnl|CDD|198139 smart01071, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a
molecular chaperone required for the activity of
numerous eukaryotic protein kinases. This domain
corresponds to the N terminal domain which binds
predominantly to protein kinases.and is found N terminal
to the Hsp (Heat shocked protein) 90-binding domain.
Expression of a construct consisting of only the
N-terminal domain of Saccharomyces pombe Cdc37 results
in cellular viability. This indicates that interactions
with the cochaperone Hsp90 may not be essential for
Cdc37 function.
Length = 154
Score = 26.6 bits (59), Expect = 8.1
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 10 SSPEPERTYLSGLPDSEWLALVLIDSPRYLDNSGYDSGIFTYLEEEEEEEEEDDKEEERV 69
E +E LA + + L+ + DS LEE ++ ++ KE++ +
Sbjct: 70 KGLREEELSPETPTYNEMLAELQDQLKKELEEANGDSE--GLLEELKKHRDKLKKEQKEL 127
Query: 70 EREEEEEEEDD 80
++ +E E+++
Sbjct: 128 RKKLDELEKEE 138
>gnl|CDD|227199 COG4862, MecA, Negative regulator of genetic competence,
sporulation and motility [Posttranslational
modification, protein turnover, chaperones / Signal
transduction mechanisms / Cell motility and secretion].
Length = 224
Score = 27.0 bits (60), Expect = 8.2
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 48 IFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
+ + E E +D E + E+ EE ++ EE+F+ E+EE
Sbjct: 73 VIVTKSKIEGEGPDDLDEFLDMPDEDGAEEGLEQLEEKFDDVEKEE 118
Score = 26.6 bits (59), Expect = 9.2
Identities = 12/44 (27%), Positives = 26/44 (59%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKV 97
+E + ++D EE +E+ EE+ ++ ++EE+ E E+E +
Sbjct: 89 DEFLDMPDEDGAEEGLEQLEEKFDDVEKEEQGDEAEKEPDYLYY 132
>gnl|CDD|237192 PRK12758, PRK12758, DNA topoisomerase IV subunit A; Provisional.
Length = 869
Score = 27.3 bits (61), Expect = 8.2
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEEE 84
EE EEE +E E V+ E+ + E+D ++E+
Sbjct: 833 YEEPEEETAEEPEEVDPEDVKSEDDIDDED 862
>gnl|CDD|218328 pfam04921, XAP5, XAP5, circadian clock regulator. This protein is
found in a wide range of eukaryotes. It is a nuclear
protein and is suggested to be DNA binding. In plants,
this family is essential for correct circadian clock
functioning by acting as a light-quality regulator
coordinating the activities of blue and red light
signalling pathways during plant growth - inhibiting
growth in red light but promoting growth in blue light.
Length = 233
Score = 26.9 bits (60), Expect = 8.2
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 21/79 (26%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEED---------------------DEEEERFEREEE 91
+++EEE+E++ ++E++V +E E +E D+ E E E
Sbjct: 15 DDDEEEDEDEGEDEKKVPKESSEPDEANVNPNKKKIGKNPSVDTSFLPDKAREEKEAELR 74
Query: 92 EERRKVTTYSENRQKTVEI 110
EE R+ + K EI
Sbjct: 75 EELREEFLKKQEAVKEEEI 93
>gnl|CDD|238932 cd01972, Nitrogenase_VnfE_like, Nitrogenase_VnfE_like: VnfE subunit
of the VnfEN complex_like. This group in addition to
VnfE contains a subset of the alpha subunit of the
nitrogenase MoFe protein and NifE-like proteins. The
nitrogenase enzyme system catalyzes the ATP-dependent
reduction of dinitrogen to ammonia. NifEN participates
in the synthesis of the iron-molybdenum cofactor
(FeMoco) of MoFe protein of the
molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur
containing precursor of the FeMoco) from NifB is
transferred to NifEN where it is further processed to
FeMoco. VnfEN may similarly be a scaffolding protein
for the iron-vanadium cofactor (FeVco) of the
vanadium-dependent (V)-nitrogenase. NifE and NifN are
essential for the Mo-nitrogenase, VnfE and VnfN are not
essential for the V-nitrogenase. NifE and NifN can
substitute when the vnfEN genes are inactivated.
Length = 426
Score = 27.0 bits (60), Expect = 8.3
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 47 GIFTYLEEEEEEEEEDDKEEERVEREEEE 75
I L E E E ++E ERV E EE
Sbjct: 258 EIAKVLGMEAEAEAVIEREHERVAPEIEE 286
>gnl|CDD|163064 TIGR02894, DNA_bind_RsfA, transcription factor, RsfA family. In a
subset of endospore-forming members of the Firmcutes,
members of this protein family are found, several to a
genome. Two very strongly conserved sequences regions
are separated by a highly variable linker region. Much
of the linker region was excised from the seed alignment
for this model. A characterized member is the
prespore-specific transcription RsfA from Bacillus
subtilis, previously called YwfN, which is controlled by
sigma factor F and seems to fine-tune expression of some
genes in the sigma-F regulon. A paralog in Bacillus
subtilis is designated YlbO [Regulatory functions, DNA
interactions, Cellular processes, Sporulation and
germination].
Length = 161
Score = 26.7 bits (59), Expect = 8.3
Identities = 16/67 (23%), Positives = 34/67 (50%)
Query: 51 YLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEI 110
+L+ + D ++ ER + + E + E E+E E+ R++++T E+ Q ++I
Sbjct: 88 FLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDI 147
Query: 111 CPEAVKI 117
A K+
Sbjct: 148 MDRARKL 154
>gnl|CDD|182791 PRK10865, PRK10865, protein disaggregation chaperone; Provisional.
Length = 857
Score = 27.1 bits (60), Expect = 8.4
Identities = 10/47 (21%), Positives = 25/47 (53%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVT 98
LE++ +E D+ ++R++ EE + + + E E + E+ ++
Sbjct: 424 LEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLS 470
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 27.3 bits (61), Expect = 8.5
Identities = 16/65 (24%), Positives = 33/65 (50%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEIC 111
+EE +E EE ++ E ++++ +E E+ EE E EE + K +++ +
Sbjct: 326 IEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLT 385
Query: 112 PEAVK 116
PE ++
Sbjct: 386 PEKLE 390
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 26.6 bits (59), Expect = 8.5
Identities = 6/41 (14%), Positives = 29/41 (70%)
Query: 51 YLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEE 91
+ ++++ +++ DK++++ + +++++ E +E+E ++ E+
Sbjct: 84 WKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLED 124
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 27.4 bits (61), Expect = 8.7
Identities = 10/57 (17%), Positives = 19/57 (33%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVE 109
E ++ +E + D E V+ + + + E E + R T E
Sbjct: 883 ENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDAAAGRLMTRE 939
>gnl|CDD|178493 PLN02905, PLN02905, beta-amylase.
Length = 702
Score = 27.3 bits (60), Expect = 8.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 48 IFTYLEEEEEEEEEDDKEEERVEREEEEE 76
I T E++EEE + D KEE+ +R E+
Sbjct: 9 IGTSEEDDEEEMDMDVKEEDDGDRRNREK 37
>gnl|CDD|224712 COG1799, COG1799, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 167
Score = 26.6 bits (59), Expect = 8.7
Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 47 GIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTT-YSENRQ 105
G F +EE+ EE+ +E E EE + E E R V Q
Sbjct: 12 GYFPLDDEEDYYEEDPRQEPRDPAVEPEEYAPPKYNFRKREPARMEMRGNVVNMPRVAAQ 71
Query: 106 KTVEICP 112
+ +I
Sbjct: 72 DSSKIVL 78
>gnl|CDD|221620 pfam12527, DUF3727, Protein of unknown function (DUF3727). This
domain family is found in bacteria and eukaryotes, and
is approximately 100 amino acids in length.
Length = 100
Score = 25.6 bits (57), Expect = 8.7
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 70 EREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQ 105
E EE+E E +EE++ E EEEE + Y E+++
Sbjct: 20 EPEEDEILELEEEDDDDEDEEEEYELLASFYHEDQE 55
>gnl|CDD|233222 TIGR00986, 3a0801s05tom22, mitochondrial import receptor subunit
Tom22. The mitochondrial protein translocase (MPT)
family, which brings nuclearly encoded preproteins into
mitochondria, is very complex with 19 currently
identified protein constituents.These proteins include
several chaperone proteins, four proteins of the outer
membrane translocase (Tom) import receptor, five
proteins of the Tom channel complex, five proteins of
the inner membrane translocase (Tim) and three "motor"
proteins. This family is specific for the Tom22
proteins [Transport and binding proteins, Amino acids,
peptides and amines].
Length = 145
Score = 26.5 bits (58), Expect = 8.8
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEE-----RFEREEEE 92
L E E+E + +++ VE EE++E+ D + E FE EEE
Sbjct: 4 LTEVEDEHFQQPEQQTVVEPEEDDEDFTDVDSEDSVDSDFESLEEE 49
>gnl|CDD|100111 cd05833, Ribosomal_P2, Ribosomal protein P2. This subfamily
represents the eukaryotic large ribosomal protein P2.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P2 is located in the L12 stalk, with proteins
P1, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers). Bacteria may have four or six copies
of L7/L12 (two or three homodimers) depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more internally
with limited reactivity in the C-terminal domains, while
P2 proteins seem to be more externally located and are
more likely to interact with other cellular components.
In lower eukaryotes, P1 and P2 are further subdivided
into P1A, P1B, P2A, and P2B, which form P1A/P2B and
P1B/P2A heterodimers. Some plants have a third
P-protein, called P3, which is not homologous to P1 and
P2. In humans, P1 and P2 are strongly autoimmunogenic.
They play a significant role in the etiology and
pathogenesis of systemic lupus erythema (SLE). In
addition, the ribosome-inactivating protein
trichosanthin (TCS) interacts with human P0, P1, and P2,
with its primary binding site in the C-terminal region
of P2. TCS inactivates the ribosome by depurinating a
specific adenine in the sarcin-ricin loop of 28S rRNA.
Length = 109
Score = 26.1 bits (58), Expect = 8.9
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 64 KEEERVEREEEEEEEDD 80
++E + E EEE +DD
Sbjct: 86 AKKEEKKEESEEESDDD 102
>gnl|CDD|222762 pfam14456, alpha-hel2, Alpha-helical domain 2. An alpha-helical
domain found in gene neighborhoods encoding genes
containing bacterial homologs of components of the
ubiquitin modification pathway such as the E1, E2, Ub
and JAB peptidase proteins.
Length = 322
Score = 27.0 bits (60), Expect = 8.9
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 61 EDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEICPEAVKIPP 119
EDD+EE E E E +++EE E R + + PE + PP
Sbjct: 140 EDDEEEAL----EVLEGEGEDDEEAAAEEYFSRVRPALAPDDGHPHLFKWGPEWARKPP 194
>gnl|CDD|218689 pfam05681, Fumerase, Fumarate hydratase (Fumerase). This family
consists of several bacterial fumarate hydratase
proteins FumA and FumB. Fumarase, or fumarate hydratase
(EC 4.2.1.2), is a component of the citric acid cycle.
In facultative anaerobes such as Escherichia coli,
fumarase also engages in the reductive pathway from
oxaloacetate to succinate during anaerobic growth. Three
fumarases, FumA, FumB, and FumC, have been reported in
E. coli. fumA and fumB genes are homologous and encode
products of identical sizes which form thermolabile
dimers of Mr 120,000. FumA and FumB are class I enzymes
and are members of the iron-dependent hydrolases, which
include aconitase and malate hydratase. The active FumA
contains a 4Fe-4S centre, and it can be inactivated upon
oxidation to give a 3Fe-4S centre.
Length = 271
Score = 26.6 bits (60), Expect = 8.9
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 154 VGIAGN-EEADRLAKEALT 171
VGI G E+A LAK+AL
Sbjct: 181 VGIGGTSEKAALLAKKALL 199
>gnl|CDD|216546 pfam01516, Orbi_VP6, Orbivirus helicase VP6. The VP6 protein a
minor protein in the core of the virion is probably the
viral helicase.
Length = 322
Score = 27.0 bits (59), Expect = 9.2
Identities = 12/46 (26%), Positives = 27/46 (58%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVT 98
E +E+E +++D +E+R+ E E+++ +EE + E+ + T
Sbjct: 32 ESKEKEPKDEDGQEQRISDGEGEQKQKGGKEESDKETEDASVDRRT 77
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 26.7 bits (59), Expect = 9.2
Identities = 14/38 (36%), Positives = 16/38 (42%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEE 91
E++ E EE EEEE EE EE E E
Sbjct: 149 EKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEESAE 186
>gnl|CDD|185103 PRK15181, PRK15181, Vi polysaccharide biosynthesis protein TviC;
Provisional.
Length = 348
Score = 27.0 bits (59), Expect = 9.3
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 2 LSWFLIIRSSPEPERTYLSGLPDSEWLALVLIDSPRYLDNSGYDSGIFTYLE 53
L +F + P Y + +P W+ +L D P Y++ G S F Y+E
Sbjct: 190 LRYFNVFGRRQNPNGAYSAVIP--RWILSLLKDEPIYINGDGSTSRDFCYIE 239
>gnl|CDD|240413 PTZ00423, PTZ00423, glideosome-associated protein 45;
Provisional.
Length = 193
Score = 26.6 bits (58), Expect = 9.3
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEE 92
E+ EE +D+ EE E+EEE EE+ +EE + +E +
Sbjct: 40 EDIVEELEDQPEEPPEQEEENEEQKPKEEIDYPIQENK 77
>gnl|CDD|218215 pfam04696, Pinin_SDK_memA, pinin/SDK/memA/ protein conserved
region. Members of this family have very varied
localisations within the eukaryotic cell. pinin is
known to localise at the desmosomes and is implicated
in anchoring intermediate filaments to the desmosomal
plaque. SDK2/3 is a dynamically localised nuclear
protein thought to be involved in modulation of
alternative pre-mRNA splicing. memA is a tumour marker
preferentially expressed in human melanoma cell lines.
A common feature of the members of this family is that
they may all participate in regulating protein-protein
interactions.
Length = 131
Score = 26.3 bits (58), Expect = 9.4
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
EE ++ + E ++ EE+E+++ EE + +RE EERR+
Sbjct: 26 EESRLTSKEKRRAEIEQKLEEQEKQEREELRKEKRELFEERRR 68
>gnl|CDD|183731 PRK12766, PRK12766, 50S ribosomal protein L32e; Provisional.
Length = 232
Score = 26.7 bits (59), Expect = 9.5
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 57 EEEEEDDKEEERVEREEEEEEEDDEEEE 84
E EE + E E EEEEEE+ D E E
Sbjct: 60 EVSEETEAEVEDEGGEEEEEEDADVETE 87
>gnl|CDD|215121 PLN02189, PLN02189, cellulose synthase.
Length = 1040
Score = 27.3 bits (60), Expect = 9.5
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 64 KEEERVEREEEEEEEDDEEEERFEREEEEERRKVTT 99
K RVE +++EE+ DD E E F ++E+++ K T
Sbjct: 90 KGSPRVEGDDDEEDIDDIEHE-FNIDDEQDKNKHIT 124
>gnl|CDD|100109 cd05831, Ribosomal_P1, Ribosomal protein P1. This subfamily
represents the eukaryotic large ribosomal protein P1.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P1 is located in the L12 stalk, with proteins
P2, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers) and bacteria may have four or six
copies (two or three homodimers), depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more
internally with limited reactivity in the C-terminal
domains, while P2 proteins seem to be more externally
located and are more likely to interact with other
cellular components. In lower eukaryotes, P1 and P2 are
further subdivided into P1A, P1B, P2A, and P2B, which
form P1A/P2B and P1B/P2A heterodimers. Some plant
species have a third P-protein, called P3, which is not
homologous to P1 and P2. In humans, P1 and P2 are
strongly autoimmunogenic. They play a significant role
in the etiology and pathogenesis of systemic lupus
erythema (SLE). In addition, the ribosome-inactivating
protein trichosanthin (TCS) interacts with human P0,
P1, and P2, with its primary binding site located in
the C-terminal region of P2. TCS inactivates the
ribosome by depurinating a specific adenine in the
sarcin-ricin loop of 28S rRNA.
Length = 103
Score = 25.7 bits (57), Expect = 9.7
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 60 EEDDKEEERVEREEEEEEEDD 80
+ K+EE+ E EEEEE +DD
Sbjct: 78 AAEAKKEEKKE-EEEEESDDD 97
>gnl|CDD|150747 pfam10107, Endonuc_Holl, Endonuclease related to archaeal Holliday
junction resolvase. This domain is found in various
predicted bacterial endonucleases which are distantly
related to archaeal Holliday junction resolvases.
Length = 153
Score = 26.2 bits (58), Expect = 9.8
Identities = 11/61 (18%), Positives = 29/61 (47%)
Query: 48 IFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKT 107
++ + + E+ + E+ E E + E E +FE +++E +++ + N+ +
Sbjct: 10 FIKIIKLQGKVEKRARELFEQWRNAEREAQAMREAEAKFEEWQKKEEKEIRKDAVNKSRA 69
Query: 108 V 108
V
Sbjct: 70 V 70
>gnl|CDD|234055 TIGR02907, spore_VI_D, stage VI sporulation protein D. SpoVID, the
stage VI sporulation protein D, is restricted to
endospore-forming members of the bacteria, all of which
are found among the Firmicutes. It is widely distributed
but not quite universal in this group. Between
well-conserved N-terminal and C-terminal domains is a
poorly conserved, low-complexity region of variable
length, rich enough in glutamic acid to cause spurious
BLAST search results unless a filter is used. The seed
alignment for this model was trimmed, in effect, by
choosing member sequences in which these regions are
relatively short. SpoVID is involved in spore coat
assembly by the mother cell compartment late in the
process of sporulation [Cellular processes, Sporulation
and germination].
Length = 338
Score = 26.8 bits (59), Expect = 9.8
Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 3/105 (2%)
Query: 23 PDSEWLALVLIDSPRYLDNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEE 82
P E A + P D + + E E E ++E +E E E +DEE
Sbjct: 179 PKVEHEAHEQHEQPADDDPDEWKISASEPFQLESEVEASPEEENYEEYEDETELEVEDEE 238
Query: 83 EERFEREEEEERRKVTTYSENRQKTVEICPEAVKIPPSAATILTK 127
+ E+ E+ ++ + E E P AT LTK
Sbjct: 239 KALDEQTEDPQQEDALAGDAKKALEEE---EEKGERPENATYLTK 280
>gnl|CDD|129416 TIGR00316, cdhC, CO dehydrogenase/CO-methylating acetyl-CoA
synthase complex, beta subunit. Nomenclature follows
the description for Methanosarcina thermophila. The
CO-methylating acetyl-CoA synthase is considered the
defining enzyme of the Wood-Ljungdahl pathway, used for
acetate catabolism by sulfate reducing bacteria but for
acetate biosynthesis by acetogenic bacteria such as
oorella thermoacetica (f. Clostridium thermoaceticum)
[Energy metabolism, Chemoautotrophy].
Length = 458
Score = 26.7 bits (59), Expect = 9.9
Identities = 13/55 (23%), Positives = 22/55 (40%)
Query: 63 DKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEICPEAVKI 117
+K V+R E +E++ EEE + EE + + P +KI
Sbjct: 390 EKGHPVVKRVVREVDEEEIEEEEEAMQPEEMEMEGFEVPALQMPAASAAPAGIKI 444
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.309 0.130 0.381
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,343,525
Number of extensions: 1241483
Number of successful extensions: 17568
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10047
Number of HSP's successfully gapped: 2225
Length of query: 223
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 130
Effective length of database: 6,812,680
Effective search space: 885648400
Effective search space used: 885648400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 57 (25.6 bits)