RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1195
(223 letters)
>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse
transcriptase) {Human immunodeficiency virus type 2
[TaxId: 11709]}
Length = 126
Score = 47.2 bits (111), Expect = 1e-07
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 127 KWPDDIQNFLILFLSKLDVQFVWVPSHVGIAGNEEADRLAKEAL 170
+ + + K + WVP+H GI GN+E D L + +
Sbjct: 83 SESKIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 126
>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus
[TaxId: 274]}
Length = 147
Score = 44.6 bits (104), Expect = 1e-06
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 131 DIQNFLILFLSKLDVQFVWVPSHVGIAGNEEADRLAKEALTSAHPS 176
D+ L+L ++ V+F +V H G NE DR A+ S +
Sbjct: 102 DLWEALLLAMAPHRVRFHFVKGHTGHPENERVDREARRQAQSQAKT 147
>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId:
562]}
Length = 152
Score = 41.2 bits (95), Expect = 2e-05
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 145 VQFVWVPSHVGIAGNEEADRLAKEA 169
+++ WV H G NE AD LA+ A
Sbjct: 114 IKWEWVKGHAGHPENERADELARAA 138
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 31.5 bits (71), Expect = 0.056
Identities = 6/44 (13%), Positives = 14/44 (31%)
Query: 51 YLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEER 94
Y E + + ++R R + ++ R +R
Sbjct: 234 YAAERDRIAAQGLAPQDRDARIAQLRQQTFTAPGEAIRAASLDR 277
Score = 26.9 bits (59), Expect = 1.8
Identities = 6/44 (13%), Positives = 15/44 (34%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
E +E ++ +ER + E++ R + +
Sbjct: 124 WAEPFFGDEQRRQRHDLERIRIANDTTLSPEQKAARLAALDAQL 167
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 31.3 bits (70), Expect = 0.084
Identities = 8/46 (17%), Positives = 22/46 (47%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKV 97
L E+ E + +E+ + +E++ +E F++E + ++
Sbjct: 248 LTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEI 293
Score = 30.5 bits (68), Expect = 0.14
Identities = 13/56 (23%), Positives = 27/56 (48%)
Query: 51 YLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQK 106
L E + + E+ +++ER +E ++ + E +R + +E+ER E Q
Sbjct: 222 MLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQL 277
Score = 30.1 bits (67), Expect = 0.19
Identities = 12/58 (20%), Positives = 27/58 (46%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEI 110
++E +E + E++E + + ++ E + +E+E+ K E+R EI
Sbjct: 236 QKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEI 293
Score = 29.7 bits (66), Expect = 0.27
Identities = 8/45 (17%), Positives = 21/45 (46%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKV 97
+ +E+E + E+E+ +E +E + E ++ + K+
Sbjct: 256 RVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKM 300
Score = 29.3 bits (65), Expect = 0.31
Identities = 6/45 (13%), Positives = 21/45 (46%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
+E ++ E + + +E+E + +E+ + +E +++
Sbjct: 241 YQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKE 285
Score = 28.9 bits (64), Expect = 0.50
Identities = 11/57 (19%), Positives = 23/57 (40%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVE 109
E + + D+ E+E E E E + + E +RK E ++++ +
Sbjct: 186 ESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQ 242
Score = 28.6 bits (63), Expect = 0.57
Identities = 5/44 (11%), Positives = 20/44 (45%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
+ + +E ++ +E+E+ ++ ++E + E + +
Sbjct: 254 NDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQ 297
Score = 28.6 bits (63), Expect = 0.66
Identities = 7/57 (12%), Positives = 23/57 (40%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVE 109
E +E + E+ +R + +E++ + + +E+ + S + ++
Sbjct: 238 ERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQ 294
Score = 27.8 bits (61), Expect = 0.97
Identities = 9/52 (17%), Positives = 24/52 (46%)
Query: 45 DSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
D + +E E E + + + + E + ++++ E+ ER +E ++
Sbjct: 196 DQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQ 247
Score = 27.8 bits (61), Expect = 1.1
Identities = 7/43 (16%), Positives = 19/43 (44%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
E + + ++E + +E+E+ E ++ R + E +
Sbjct: 253 ENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQD 295
Score = 27.4 bits (60), Expect = 1.4
Identities = 8/40 (20%), Positives = 21/40 (52%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEE 91
L+E+E +E+E++ +E ++E + E + + +
Sbjct: 260 LKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 299
Score = 27.0 bits (59), Expect = 2.1
Identities = 6/41 (14%), Positives = 17/41 (41%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEE 92
L +E+E +E+ +E ++E + + + +
Sbjct: 259 LLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 299
Score = 26.6 bits (58), Expect = 2.7
Identities = 7/57 (12%), Positives = 24/57 (42%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVE 109
+ E + E + + E+ E+++ +E ++ E+ + +++T+
Sbjct: 212 KAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLA 268
Score = 25.9 bits (56), Expect = 4.1
Identities = 6/54 (11%), Positives = 20/54 (37%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQK 106
+ E + E+ ++E +E + E+ E + + ++ + +
Sbjct: 219 SAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQ 272
Score = 25.5 bits (55), Expect = 5.9
Identities = 7/54 (12%), Positives = 20/54 (37%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQK 106
E E E + + + E + + + E++ +E ++ +R +
Sbjct: 205 EIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQ 258
Score = 25.1 bits (54), Expect = 7.6
Identities = 11/54 (20%), Positives = 25/54 (46%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQK 106
++ E+E + E ERV+ E + E + + E+ E+++ + +Q
Sbjct: 195 TDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQL 248
>d1siga_ a.177.1.1 (A:) Sigma70 {Escherichia coli [TaxId: 562]}
Length = 334
Score = 29.9 bits (66), Expect = 0.26
Identities = 8/54 (14%), Positives = 22/54 (40%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQK 106
EE+ E + + +++E++DEE+ + +++ E +
Sbjct: 58 AEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAE 111
Score = 28.3 bits (62), Expect = 0.66
Identities = 6/65 (9%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 48 IFTYLEEEEEEEE-----EDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSE 102
I +++ EE+ E + + +++E+E++++ ++ ++ ++
Sbjct: 50 ITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKF 109
Query: 103 NRQKT 107
+
Sbjct: 110 AELRA 114
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 29.3 bits (66), Expect = 0.32
Identities = 8/32 (25%), Positives = 21/32 (65%)
Query: 48 IFTYLEEEEEEEEEDDKEEERVEREEEEEEED 79
+F Y + ++E++++ +E++ R E E+ E+
Sbjct: 97 MFDYFQLQKEQKKQLTSQEKKQIRLEREKFEE 128
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 28.3 bits (63), Expect = 0.37
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
+ +E E E+ E E E ++ EE F + +E+ +
Sbjct: 57 RRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQ 100
Score = 28.3 bits (63), Expect = 0.47
Identities = 6/46 (13%), Positives = 15/46 (32%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKV 97
EE +E+ ++ E +E + +E+ +
Sbjct: 82 KAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHA 127
Score = 27.2 bits (60), Expect = 0.99
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEE 92
L ++ E +E+ + E +E++ EE R +E +E
Sbjct: 98 LAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKE 138
Score = 26.4 bits (58), Expect = 1.9
Identities = 8/43 (18%), Positives = 15/43 (34%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERR 95
+ E E E EE + +E+ ++ E + E
Sbjct: 72 KREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLA 114
Score = 26.0 bits (57), Expect = 2.4
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
++++ E EE K +E + E+ + E E + EE
Sbjct: 47 IQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFI 91
Score = 26.0 bits (57), Expect = 2.4
Identities = 11/62 (17%), Positives = 24/62 (38%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEICP 112
+ E EE +E E ++ E+ E + E ++ E + + ++ +
Sbjct: 50 KLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENR 109
Query: 113 EA 114
EA
Sbjct: 110 EA 111
Score = 26.0 bits (57), Expect = 2.5
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
++ E EE +E + + E+ E + E + EE K
Sbjct: 49 KKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIK 92
Score = 25.6 bits (56), Expect = 3.8
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 58 EEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
EE + E R+ +E E E+ E E E ++
Sbjct: 45 EEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKA 83
Score = 25.2 bits (55), Expect = 4.6
Identities = 9/41 (21%), Positives = 20/41 (48%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
++ E ++++E E +E+D EE + +E +E
Sbjct: 98 LAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKE 138
Score = 25.2 bits (55), Expect = 4.6
Identities = 5/44 (11%), Positives = 16/44 (36%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
E E ++ ++ +E+ ++ + +E E +
Sbjct: 76 EREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLER 119
Score = 24.5 bits (53), Expect = 7.6
Identities = 7/45 (15%), Positives = 20/45 (44%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
+E+ ++ E +KE E ++++ E + +E ++
Sbjct: 94 AKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKE 138
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 28.9 bits (65), Expect = 0.44
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 48 IFTYLEEEEEEEEEDDKEEERVEREEEEEEED 79
+ Y + + E ++ KEE+ +EE E+
Sbjct: 105 MSQYFKAQTEARKQMSKEEKLKIKEENEKLLK 136
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret
disjunctional) {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 368
Score = 28.7 bits (63), Expect = 0.62
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 64 KEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
+ E + R E++ + E + + ER++
Sbjct: 3 QRTEELLRCNEQQAAELETCKEQLFQSNMERKE 35
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 28.6 bits (63), Expect = 0.72
Identities = 7/54 (12%), Positives = 20/54 (37%), Gaps = 8/54 (14%)
Query: 49 FTYLEEEEEEEEEDDKEEERVEREE--------EEEEEDDEEEERFEREEEEER 94
T ++ +++ +KE E + + + + + F + + E R
Sbjct: 706 LTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAEAR 759
>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS)
{Pyrococcus abyssi [TaxId: 29292]}
Length = 210
Score = 27.9 bits (61), Expect = 0.80
Identities = 5/73 (6%), Positives = 21/73 (28%), Gaps = 3/73 (4%)
Query: 21 GLPDSEWLALVLIDSPRYLDNSGYDSGIFTYLEEEEEEEEEDDKEEERVEREEEEEEEDD 80
L + + + + + +F + +++ + + +
Sbjct: 124 NLDEVKRWEFRELPAGHKVRKPEI---LFKKVTDDQIIYFILNYMAKGNPEGARILLDKY 180
Query: 81 EEEERFEREEEEE 93
+ E R +E+
Sbjct: 181 YKREDVIRVAKEK 193
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 28.1 bits (62), Expect = 0.88
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 54 EEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTY 100
+E+ + E+ K +E VE E E DEEE+ EEE+ + + ++
Sbjct: 73 QEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPSF 119
Score = 26.5 bits (58), Expect = 2.4
Identities = 7/42 (16%), Positives = 17/42 (40%)
Query: 50 TYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEE 91
+ E+ + + E E E +EE+ + + E + +
Sbjct: 73 QEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVK 114
Score = 26.1 bits (57), Expect = 4.1
Identities = 9/46 (19%), Positives = 21/46 (45%)
Query: 48 IFTYLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
I + E+ + E+ +E E E +++E+ + EE+ +
Sbjct: 69 IISGQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVK 114
Score = 25.4 bits (55), Expect = 6.9
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEER 94
+E+ + E+ +E E E D+EE+ + + EEE+ +
Sbjct: 73 QEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVK 114
>d1ofcx3 a.187.1.1 (X:697-798) HAND domain of the nucleosome
remodeling ATPase ISWI {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 102
Score = 26.7 bits (59), Expect = 0.94
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 57 EEEEEDDKEEERVEREEEEEEEDDE---EEERFEREE 90
+ E + +V+REE+ + ++ E EEE E+E
Sbjct: 59 PKNTELGSDATKVQREEQRKIDEAEPLTEEEIQEKEN 95
>d1u8xx2 d.162.1.2 (X:170-445) Maltose-6'-phosphate glucosidase GlvA
{Bacillus subtilis [TaxId: 1423]}
Length = 276
Score = 27.6 bits (61), Expect = 1.0
Identities = 5/52 (9%), Positives = 16/52 (30%)
Query: 51 YLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSE 102
+ ++ ++ + V E + E+ E K+ ++
Sbjct: 102 FPDDMVKKSNPNHTRANEVMEGREAFIFSQCDMITREQSSENSEIKIDDHAS 153
>d1dq3a1 b.86.1.2 (A:1-128,A:415-454) PI-Pfui intein {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 168
Score = 27.3 bits (60), Expect = 1.1
Identities = 15/55 (27%), Positives = 23/55 (41%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVE 109
E E EE EE ER + E DEE R+ + V ++ ++ V+
Sbjct: 11 ENEGEEHLTTMEEMYERYKHLGEFYDEEYNRWGIDVSNVPIYVKSFDPESKRVVK 65
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 26.6 bits (58), Expect = 1.2
Identities = 14/50 (28%), Positives = 20/50 (40%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENR 104
EE +EE + + R E+ E + E R E R+ V NR
Sbjct: 1 EELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETMRKNVAGDGVNR 50
>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 217
Score = 27.3 bits (60), Expect = 1.3
Identities = 6/41 (14%), Positives = 20/41 (48%)
Query: 56 EEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
++++ ++ ++ +E E D+E+E R+ + +
Sbjct: 46 RDDKDSKERMSRKMSIQEYELIHQDKEDEGCLRKYRRQCMQ 86
Score = 25.0 bits (54), Expect = 7.7
Identities = 5/44 (11%), Positives = 21/44 (47%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRK 96
++++ +E K + +++ED+ ++ R+ ++ +
Sbjct: 47 DDKDSKERMSRKMSIQEYELIHQDKEDEGCLRKYRRQCMQDMHQ 90
>d1ispa_ c.69.1.18 (A:) Lipase A {Bacillus subtilis [TaxId: 1423]}
Length = 179
Score = 26.8 bits (58), Expect = 1.6
Identities = 13/76 (17%), Positives = 22/76 (28%), Gaps = 17/76 (22%)
Query: 118 PPSAATILTKWPDDIQNFLILFLSKLDVQFVWVP-----------------SHVGIAGNE 160
+ T P N IL+ S + V H+G+ +
Sbjct: 103 GANRLTTGKALPGTDPNQKILYTSIYSSADMIVMNYLSRLDGARNVQIHGVGHIGLLYSS 162
Query: 161 EADRLAKEALTSAHPS 176
+ + L KE L +
Sbjct: 163 QVNSLIKEGLNGGGQN 178
>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 25.9 bits (57), Expect = 2.3
Identities = 8/54 (14%), Positives = 20/54 (37%)
Query: 57 EEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEI 110
+ E+ D ++ E+E ++ + EE + E + ++ T
Sbjct: 3 DNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPY 56
Score = 25.9 bits (57), Expect = 2.7
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEE 93
E+ + ++ DD EE+ + E EE+ +E E
Sbjct: 5 EDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERP 45
Score = 24.4 bits (53), Expect = 8.1
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEEER 85
+ E+ + D ++ E E ++ E+ EEE +
Sbjct: 3 DNEDNFDGDDFDDVEEDEGLDDLENAEEEGQ 33
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 26.8 bits (58), Expect = 2.3
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEE 91
E E EE + + R E E E D+ E++ EE
Sbjct: 183 EAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEE 221
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 26.9 bits (58), Expect = 2.4
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 55 EEEEEEEDDKEEERVEREEEEEEEDDEEEERFERE 89
+E K+ +E+ + DDEE E + E
Sbjct: 330 VSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364
>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal
domain {Bacillus stearothermophilus [TaxId: 1422]}
Length = 323
Score = 26.9 bits (58), Expect = 2.5
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 60 EEDDK--EEERVEREEEEEEEDDEEEER 85
EE+ + +VE E++ E+ E
Sbjct: 294 EENGRVISVWKVEAEDKTEKLAAALEHH 321
>d1p32a_ d.25.1.1 (A:) Acidic mitochondrial matrix protein p32
{Human (Homo sapiens) [TaxId: 9606]}
Length = 209
Score = 26.4 bits (58), Expect = 2.6
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVT 98
L +E +EE + K + + E E + E + R+ E+ VT
Sbjct: 13 LSDEIKEERKIQKHKTLPKMSGGWELELNGTEAKLVRKVAGEKITVT 59
>d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse
transcriptase) {Human immunodeficiency virus type 1
[TaxId: 11676]}
Length = 110
Score = 24.9 bits (54), Expect = 4.5
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 124 ILTKWPD-----DIQNFLILFLSKLDVQFVWVPSH 153
I+ PD + + + K V WVP+H
Sbjct: 76 IIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAH 110
>d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida
antarctica), form b [TaxId: 34362]}
Length = 317
Score = 25.8 bits (56), Expect = 4.6
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 149 WVPSHVGIAGNEEADRLAKEALTS 172
+V H G ++ + + + AL S
Sbjct: 220 FVIDHAGSLTSQFSYVVGRSALRS 243
>d1xg8a_ c.47.1.17 (A:) Hypothetical protein SA0798
{Staphylococcus aureus [TaxId: 1280]}
Length = 111
Score = 24.8 bits (54), Expect = 5.5
Identities = 7/28 (25%), Positives = 18/28 (64%)
Query: 49 FTYLEEEEEEEEEDDKEEERVEREEEEE 76
+TY++ ++ + D + + +ER E++E
Sbjct: 50 YTYIDITKDNDNLTDHDLQFIERIEQDE 77
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 350
Score = 25.5 bits (55), Expect = 6.5
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 145 VQFVWVPSHVGIAGNEE------ADRLAKEALTSAHPSVNQIPIPNYKTYS--KKKIL 194
+QF + G + + E L ++H N + +P Y + K+++L
Sbjct: 287 LQFTTGTDRAPVGGLGKLKMIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKERLL 344
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 25.4 bits (55), Expect = 6.5
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 52 LEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTTYSENRQKTVEIC 111
L E + +E +E E ER+ + + + E E R +E+
Sbjct: 315 LREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVT 374
Query: 112 PEAVKIPPSAATILTKW 128
E + A I+++W
Sbjct: 375 EEDI------AEIVSRW 385
>d1us7b_ a.205.1.1 (B:) Hsp90 co-chaperone CDC37 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 201
Score = 25.1 bits (55), Expect = 6.7
Identities = 10/47 (21%), Positives = 18/47 (38%)
Query: 53 EEEEEEEEEDDKEEERVEREEEEEEEDDEEEERFEREEEEERRKVTT 99
+ E+ KE E ER++ + E +E EE ++
Sbjct: 118 GRAKLRIEKAMKEYEEEERKKRLGPGGLDPVEVYESLPEELQKCFDV 164
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 25.0 bits (54), Expect = 7.9
Identities = 6/36 (16%), Positives = 11/36 (30%)
Query: 51 YLEEEEEEEEEDDKEEERVEREEEEEEEDDEEEERF 86
YLE + E ++ + E+ F
Sbjct: 27 YLEFQYSFEMCLKCIKKEQPSHYKYHEKHYANAAIF 62
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.309 0.130 0.381
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 916,162
Number of extensions: 46796
Number of successful extensions: 532
Number of sequences better than 10.0: 1
Number of HSP's gapped: 399
Number of HSP's successfully gapped: 132
Length of query: 223
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 141
Effective length of database: 1,281,736
Effective search space: 180724776
Effective search space used: 180724776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (23.9 bits)