BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11954
(881 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q7Z|A Chain A, Solution Structure Of The 30 Scr Domains Of Human Complement
Receptor 1
Length = 1931
Score = 112 bits (280), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 165/714 (23%), Positives = 249/714 (34%), Gaps = 171/714 (23%)
Query: 266 LDYLHW-----ICQHNPANCGSPDRHVNTTFVGTVSTKLGSTISYACPEGNMLVGSATRT 320
LD L W +C+ +C +P VN ++GS I+Y+C G+ L+G ++
Sbjct: 496 LDNLVWSSPKDVCKRK--SCKTPPDPVNGMVHVITDIQVGSRINYSCTTGHRLIGHSSAE 553
Query: 321 C----KEGFWTGVAPTCQYFQLQPMDVPNLVLYLFLSKLFRESYERLNVDCGKLEHIEHG 376
C W+ P CQ + CG I +G
Sbjct: 554 CILSGNAAHWSTKPPICQ-----------------------------RIPCGLPPTIANG 584
Query: 377 TVTLETTRTTH-GAVAIYACHEN------YTLIGETRRVCGDG----GKWNGTEPQCLFD 425
H G+V Y C+ + L+GE C G W+G PQC+
Sbjct: 585 DFISTNRENFHYGSVVTYRCNPGSGGRKVFELVGEPSIYCTSNDDQVGIWSGPAPQCIIP 644
Query: 426 WCAEPPQISGGIVTTSGRRTGS---VATYSCEPGFILFGSN------VN------IDCGR 470
PP + GI+ + R S V + C+PGF++ G +N C R
Sbjct: 645 NKCTPPNVENGILVSDNRSLFSLNEVVEFRCQPGFVMKGPRRVKCQALNKWEPELPSCSR 704
Query: 471 LTAIP----YGSISYLNETTY-LGSEVLYSCSRNYRLVGHPRRSCLESKVWSDTAPKCEG 525
+ P + + ++ + G EV YSC Y L G C WS AP CE
Sbjct: 705 VCQPPPDVLHAERTQRDKDNFSPGQEVFYSCEPGYDLRGAASMRCTPQGDWSPAAPTCEV 764
Query: 526 KATKDIKVCSNVAVDRREIRCPEPTLPAHSILSVTGNDRLYGRT----LIKTADSA--SS 579
K+ D ++ R + L A +L G + ++ +S SS
Sbjct: 765 KSCDDFM---GQLLNGRVLFPVNLQLGAKVDFVCDEGFQLKGSSASYCVLAGMESLWNSS 821
Query: 580 VATYKIGALPTLPAHSILSVTGNDRLYGRTLIKTADSASSVATYKIGALVKYRC----ER 635
V + P+ P V N R G+ L + G V Y C +R
Sbjct: 822 VPVCEQIFCPSPP------VIPNGRHTGKPL----------EVFPFGKAVNYTCDPHPDR 865
Query: 636 G--YKVEGEPLSTC----EDTGSWSGSVPEC-IYVDCGNPETVPNGGFTLTSNATYY--G 686
G + + GE C + G WS P C I C P+ +NA+ + G
Sbjct: 866 GTSFDLIGESTIRCTSDPQGNGVWSSPAPRCGILGHCQAPDHFLFAKLKTQTNASDFPIG 925
Query: 687 TAVLYECDENYRLEGHARRL---CLENGTWSSGLPTCKGNE------------------- 724
T++ YEC R E + R CL+N WSS CK
Sbjct: 926 TSLKYEC----RPEYYGRPFSITCLDNLVWSSPKDVCKRKSCKTPPDPVNGMVHVITDIQ 981
Query: 725 ----------------GHARRLCLENGT---WSSGLPTCK--GCKTPKKSLTRPALSCLP 763
GH+ C+ +G WS+ P C+ C P +S
Sbjct: 982 VGSRINYSCTTGHRLIGHSSAECILSGNTAHWSTKPPICQRIPCGLPPTIANGDFIS-TN 1040
Query: 764 GKRFYY-------------HRGIFRLQNTQKVSYTRTCTKRGTWSGHIPTCKAIDCSHPG 810
+ F+Y R +F L + T + G WSG P C + P
Sbjct: 1041 RENFHYGSVVTYRCNLGSRGRKVFELVGEPSIYCTSNDDQVGIWSGPAPQCIIPNKCTPP 1100
Query: 811 SIDNGRVIIMNQTT-TYNSAVEYHCVPQYQRIGPYLRKCMEDGSWSGDEPRCEK 863
+++NG ++ N++ + N VE+ C P + GP KC W + P C +
Sbjct: 1101 NVENGILVSDNRSLFSLNEVVEFRCQPGFVMKGPRRVKCQALNKWEPELPSCSR 1154
Score = 110 bits (274), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 140/637 (21%), Positives = 219/637 (34%), Gaps = 122/637 (19%)
Query: 295 VSTKLGSTISYACPEGNMLVGSATRTC----KEGFWTGVAPTCQYFQLQPMDVPNLVLYL 350
++ +LG+ +S+ C EG L GS+ C W P C++
Sbjct: 1233 LNLQLGAKVSFVCDEGFRLKGSSVSHCVLVGMRSLWNNSVPVCEH--------------- 1277
Query: 351 FLSKLFRESYERLNVDCGKLEHIEHGTVT-LETTRTTHGAVAIYACHEN------YTLIG 403
+ C I +G T + +G Y C + + LIG
Sbjct: 1278 --------------IFCPNPPAILNGRHTGTPSGDIPYGKEISYTCDPHPDRGMTFNLIG 1323
Query: 404 ETRRVCGD----GGKWNGTEPQCLFD----WCAEPPQISGGIVTTSGRR----TGSVATY 451
E+ C G W+ P+C C P Q T G+ Y
Sbjct: 1324 ESTIRCTSDPHGNGVWSSPAPRCELSVRAGHCKTPEQFPFASPTIPINDFEFPVGTSLNY 1383
Query: 452 SCEPGFI-----------LFGSNVNIDCGRLT----AIPYGSISYLNETTYLGSEVLYSC 496
C PG+ L S+V +C R + P+ + ++N T GS V YSC
Sbjct: 1384 ECRPGYFGKMFSISCLENLVWSSVEDNCRRKSCGPPPEPFNGMVHINTDTQFGSTVNYSC 1443
Query: 497 SRNYRLVGHPRRSCLESK---VWSDTAPKCEGKATKDIKVCSNVAVDRREIRCPEPTLPA 553
+ +RL+G P +CL S W AP CE + + SN +
Sbjct: 1444 NEGFRLIGSPSTTCLVSGNNVTWDKKAPICEIISCEPPPTISNGDFYSNN----RTSFHN 1499
Query: 554 HSILSVTGNDRLYGRTLIKTADSASSVATYK---IGALPTLPAHSILSVTGNDRLYGRTL 610
++++ + G L + S T K +G + P I ++ +
Sbjct: 1500 GTVVTYQCHTGPDGEQLFELVGERSIYCTSKDDQVGVWSSPPPRCI----STNKCTAPEV 1555
Query: 611 IKTADSASSVATYKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECIYVDCGNPET 670
+ + + + ++++RC+ G+ + G C+ G W +P C V C P
Sbjct: 1556 ENAIRVPGNRSFFSLTEIIRFRCQPGFVMVGSHTVQCQTNGRWGPKLPHCSRV-CQPPPE 1614
Query: 671 VPNGGFTLTSNATYY-GTAVLYECDENYRLEGHARRLCLENGTWSSGLPTCKGNEGHARR 729
+ +G TL+ + G V Y C+ +Y L G A C G WS P C
Sbjct: 1615 ILHGEHTLSHQDNFSPGQEVFYSCEPSYDLRGAASLHCTPQGDWSPEAPRC--------- 1665
Query: 730 LCLENGTWSSGLPTCKGC-----KTPKKSLTRPALSCLPGKRFYYHRGIFRLQNTQKVSY 784
T K C + P + P L K + FRL+ + S+
Sbjct: 1666 -------------TVKSCDDFLGQLPHGRVLLPLNLQLGAKVSFVCDEGFRLKG-RSASH 1711
Query: 785 TRTCTKRGTWSGHIPTCKAIDCSHPGSIDNGRVI-IMNQTTTYNSAVEYHCVPQYQR--- 840
+ W+ +P C+ I C +P +I NGR Y + Y C R
Sbjct: 1712 CVLAGMKALWNSSVPVCEQIFCPNPPAILNGRHTGTPFGDIPYGKEISYACDTHPDRGMT 1771
Query: 841 ---IGPYLRKCMED----GSWSGDEPRCEKRFNSGIP 870
IG +C D G WS PRCE + P
Sbjct: 1772 FNLIGESSIRCTSDPQGNGVWSSPAPRCELSVPAACP 1808
Score = 109 bits (272), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 162/698 (23%), Positives = 239/698 (34%), Gaps = 168/698 (24%)
Query: 279 NCGSPDRHVNTTFVGTVSTKLGSTISYACPEGNMLVGSATRTC----KEGFWTGVAPTCQ 334
+C +P VN + GS I Y+C +G L+GS++ TC W P C
Sbjct: 62 SCRNPPDPVNGMVHVIKGIQFGSQIKYSCTKGYRLIGSSSATCIISGDTVIWDNETPICD 121
Query: 335 YFQLQPMDVPNLVLYLFLSKLFRESYERLNVDCGKLEHIEHGTVTLETTRTTH-GAVAIY 393
+ CG I +G H G+V Y
Sbjct: 122 -----------------------------RIPCGLPPTITNGDFISTNRENFHYGSVVTY 152
Query: 394 ACHEN------YTLIGETRRVCGDG----GKWNGTEPQCLFDWCAEPPQISGGIVTTSGR 443
C+ + L+GE C G W+G PQC+ PP + GI+ + R
Sbjct: 153 RCNPGSGGRKVFELVGEPSIYCTSNDDQVGIWSGPAPQCIIPNKCTPPNVENGILVSDNR 212
Query: 444 RTGS---VATYSCEPGFILFGSN------VN------IDCGRLTAIP----YGSISYLNE 484
S V + C+PGF++ G +N C R+ P + + ++
Sbjct: 213 SLFSLNEVVEFRCQPGFVMKGPRRVKCQALNKWEPELPSCSRVCQPPPDVLHAERTQRDK 272
Query: 485 TTY-LGSEVLYSCSRNYRLVGHPRRSCLESKVWSDTAPKCEGKATKDIKVCSNVAVDRRE 543
+ G EV YSC Y L G C WS AP CE K+ D ++ R
Sbjct: 273 DNFSPGQEVFYSCEPGYDLRGAASMRCTPQGDWSPAAPTCEVKSCDDFM---GQLLNGRV 329
Query: 544 IRCPEPTLPAHSILSVTGNDRLYGRT----LIKTADSA--SSVATYKIGALPTLPAHSIL 597
+ L A +L G + ++ +S SSV + P+ P
Sbjct: 330 LFPVNLQLGAKVDFVCDEGFQLKGSSASYCVLAGMESLWNSSVPVCEQIFCPSPP----- 384
Query: 598 SVTGNDRLYGRTLIKTADSASSVATYKIGALVKYRC----ERG--YKVEGEPLSTC---- 647
V N R G+ L + G V Y C +RG + + GE C
Sbjct: 385 -VIPNGRHTGKPL----------EVFPFGKAVNYTCDPHPDRGTSFDLIGESTIRCTSDP 433
Query: 648 EDTGSWSGSVPEC-IYVDCGNPETVPNGGFTLTSNATYY--GTAVLYECDENYRLEGHAR 704
+ G WS P C I C P+ +NA+ + GT++ YEC R E + R
Sbjct: 434 QGNGVWSSPAPRCGILGHCQAPDHFLFAKLKTQTNASDFPIGTSLKYEC----RPEYYGR 489
Query: 705 RL---CLENGTWSSGLPTCKGNE-----------------------------------GH 726
CL+N WSS CK GH
Sbjct: 490 PFSITCLDNLVWSSPKDVCKRKSCKTPPDPVNGMVHVITDIQVGSRINYSCTTGHRLIGH 549
Query: 727 ARRLCLENGT---WSSGLPTCK--GCKTPKKSLTRPALS---------------CLPGKR 766
+ C+ +G WS+ P C+ C P +S C PG
Sbjct: 550 SSAECILSGNAAHWSTKPPICQRIPCGLPPTIANGDFISTNRENFHYGSVVTYRCNPGSG 609
Query: 767 FYYHRGIFRLQNTQKVSYTRTCTKRGTWSGHIPTCKAIDCSHPGSIDNGRVIIMNQTT-T 825
R +F L + T + G WSG P C + P +++NG ++ N++ +
Sbjct: 610 ---GRKVFELVGEPSIYCTSNDDQVGIWSGPAPQCIIPNKCTPPNVENGILVSDNRSLFS 666
Query: 826 YNSAVEYHCVPQYQRIGPYLRKCMEDGSWSGDEPRCEK 863
N VE+ C P + GP KC W + P C +
Sbjct: 667 LNEVVEFRCQPGFVMKGPRRVKCQALNKWEPELPSCSR 704
Score = 107 bits (266), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 164/708 (23%), Positives = 243/708 (34%), Gaps = 170/708 (24%)
Query: 270 HW-----ICQHNPANCGSPDRHVNTTFVGTVSTKL--GSTISYACPEGNM------LVGS 316
HW ICQ P CG P N F+ T GS ++Y C G+ LVG
Sbjct: 1012 HWSTKPPICQRIP--CGLPPTIANGDFISTNRENFHYGSVVTYRCNLGSRGRKVFELVGE 1069
Query: 317 ATRTC-----KEGFWTGVAPTCQY-FQLQPMDVPNLVLYLFLSKLF-------------- 356
+ C + G W+G AP C + P +V N +L LF
Sbjct: 1070 PSIYCTSNDDQVGIWSGPAPQCIIPNKCTPPNVENGILVSDNRSLFSLNEVVEFRCQPGF 1129
Query: 357 ------RESYERLNV----------DCGKLEHIEHGTVTL-ETTRTTHGAVAIYACHENY 399
R + LN C I HG T + G Y+C Y
Sbjct: 1130 VMKGPRRVKCQALNKWEPELPSCSRVCQPPPEILHGEHTPSHQDNFSPGQEVFYSCEPGY 1189
Query: 400 TLIGETRRVCGDGGKWNGTEPQCLF----DWCAEPPQISGGIVTTSGRRTGSVATYSCEP 455
L G C G W+ P+C D+ + P G ++ + G+ ++ C+
Sbjct: 1190 DLRGAASLHCTPQGDWSPEAPRCAVKSCDDFLGQLPH--GRVLFPLNLQLGAKVSFVCDE 1247
Query: 456 GFILFGSNV--------------------NIDC--------GRLTAIPYGSISYLNETTY 487
GF L GS+V +I C GR T P G I Y
Sbjct: 1248 GFRLKGSSVSHCVLVGMRSLWNNSVPVCEHIFCPNPPAILNGRHTGTPSGDIPY------ 1301
Query: 488 LGSEVLYSCSRN------YRLVGHPRRSCLESK----VWSDTAPKCEGKATKDIKVCSNV 537
G E+ Y+C + + L+G C VWS AP+CE +
Sbjct: 1302 -GKEISYTCDPHPDRGMTFNLIGESTIRCTSDPHGNGVWSSPAPRCE------------L 1348
Query: 538 AVDRREIRCPEPTLPAHSILSVTGNDRLYGRTLIKTADSASSVATYKIGALPTLPAHSIL 597
+V + PE A + + + G +L + I L L S+
Sbjct: 1349 SVRAGHCKTPEQFPFASPTIPINDFEFPVGTSLNYECRPGYFGKMFSISCLENLVWSSV- 1407
Query: 598 SVTGNDRLYGRTLIKTADSASSVATY----KIGALVKYRCERGYKVEGEPLSTCEDTG-- 651
D ++ + + + + G+ V Y C G+++ G P +TC +G
Sbjct: 1408 ----EDNCRRKSCGPPPEPFNGMVHINTDTQFGSTVNYSCNEGFRLIGSPSTTCLVSGNN 1463
Query: 652 -SWSGSVPECIYVDCGNPETVPNGGFTLTSNATYY-GTAVLYEC------DENYRLEGHA 703
+W P C + C P T+ NG F + +++ GT V Y+C ++ + L G
Sbjct: 1464 VTWDKKAPICEIISCEPPPTISNGDFYSNNRTSFHNGTVVTYQCHTGPDGEQLFELVGER 1523
Query: 704 RRLCLENGTWSSGLPTCKGNEGHARRLCLENGTWSSGLPTC---KGCKTPK-KSLTRPAL 759
C + G WSS P C C P+ ++ R
Sbjct: 1524 SIYCTSKDD--------------------QVGVWSSPPPRCISTNKCTAPEVENAIR--- 1560
Query: 760 SCLPGKR-FYYHRGIFRLQNTQKV----SYTRTCTKRGTWSGHIPTCKAIDCSHPGSIDN 814
+PG R F+ I R + S+T C G W +P C + C P I +
Sbjct: 1561 --VPGNRSFFSLTEIIRFRCQPGFVMVGSHTVQCQTNGRWGPKLPHCSRV-CQPPPEILH 1617
Query: 815 GRVIIMNQTT-TYNSAVEYHCVPQYQRIGPYLRKCMEDGSWSGDEPRC 861
G + +Q + V Y C P Y G C G WS + PRC
Sbjct: 1618 GEHTLSHQDNFSPGQEVFYSCEPSYDLRGAASLHCTPQGDWSPEAPRC 1665
Score = 105 bits (261), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 153/673 (22%), Positives = 235/673 (34%), Gaps = 152/673 (22%)
Query: 287 VNTTFVGTVSTKLGSTISYACPEGNMLVGSATRTC----KEGFWTGVAPTC-QYFQLQPM 341
+N + V+ +LG+ + + C EG L GS+ C E W P C Q F P
Sbjct: 775 LNGRVLFPVNLQLGAKVDFVCDEGFQLKGSSASYCVLAGMESLWNSSVPVCEQIFCPSPP 834
Query: 342 DVPN-------LVLYLFLSKLFRESYERLNVDCGKLEHIEHGTVTLETTRTTHGAVAIYA 394
+PN L ++ F + +N C H + GT
Sbjct: 835 VIPNGRHTGKPLEVFPF--------GKAVNYTCDP--HPDRGT----------------- 867
Query: 395 CHENYTLIGETRRVCGD----GGKWNGTEPQC-LFDWCAEPPQISGGIVTT----SGRRT 445
++ LIGE+ C G W+ P+C + C P + T S
Sbjct: 868 ---SFDLIGESTIRCTSDPQGNGVWSSPAPRCGILGHCQAPDHFLFAKLKTQTNASDFPI 924
Query: 446 GSVATYSCEPGFILFGSNVNIDC-----------------GRLTAIPYGSISYLNETTYL 488
G+ Y C P + +G +I C + P + ++ +
Sbjct: 925 GTSLKYECRPEY--YGRPFSITCLDNLVWSSPKDVCKRKSCKTPPDPVNGMVHVITDIQV 982
Query: 489 GSEVLYSCSRNYRLVGHPRRSCLES---KVWSDTAPKCEGKATKDIKVCSNVAVDRREIR 545
GS + YSC+ +RL+GH C+ S WS P C+ I
Sbjct: 983 GSRINYSCTTGHRLIGHSSAECILSGNTAHWSTKPPICQ------------------RIP 1024
Query: 546 CP-EPTLPAHSILSVTGNDRLYGRTLIKTADSASSVATYKIGALPTLPAHSILSVTGNDR 604
C PT+ +S + YG + + S K+ L P+ + T ND
Sbjct: 1025 CGLPPTIANGDFISTNRENFHYGSVVTYRCNLGSR--GRKVFELVGEPS---IYCTSNDD 1079
Query: 605 LYG-------RTLIKTADSASSV----------ATYKIGALVKYRCERGYKVEGEPLSTC 647
G + +I + +V + + + +V++RC+ G+ ++G C
Sbjct: 1080 QVGIWSGPAPQCIIPNKCTPPNVENGILVSDNRSLFSLNEVVEFRCQPGFVMKGPRRVKC 1139
Query: 648 EDTGSWSGSVPECIYVDCGNPETVPNGGFTLTSNATYY-GTAVLYECDENYRLEGHARRL 706
+ W +P C V C P + +G T + + G V Y C+ Y L G A
Sbjct: 1140 QALNKWEPELPSCSRV-CQPPPEILHGEHTPSHQDNFSPGQEVFYSCEPGYDLRGAASLH 1198
Query: 707 CLENGTWSSGLPTCKGNEGHARRLCLENGTWSSGLPTCKGCKTPKKSLTRPALSCLPGKR 766
C G WS P C A + C + + P + P L K
Sbjct: 1199 CTPQGDWSPEAPRC------AVKSCDDFLG-----------QLPHGRVLFPLNLQLGAKV 1241
Query: 767 FYYHRGIFRLQNTQKVSYTRTCTKRGTWSGHIPTCKAIDCSHPGSIDNGRVI-IMNQTTT 825
+ FRL+ + VS+ R W+ +P C+ I C +P +I NGR +
Sbjct: 1242 SFVCDEGFRLKGS-SVSHCVLVGMRSLWNNSVPVCEHIFCPNPPAILNGRHTGTPSGDIP 1300
Query: 826 YNSAVEYHCVPQYQR------IGPYLRKCMED----GSWSGDEPRCEKRFNSG------- 868
Y + Y C P R IG +C D G WS PRCE +G
Sbjct: 1301 YGKEISYTCDPHPDRGMTFNLIGESTIRCTSDPHGNGVWSSPAPRCELSVRAGHCKTPEQ 1360
Query: 869 IPGRSRRSPINSF 881
P S PIN F
Sbjct: 1361 FPFASPTIPINDF 1373
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 185/786 (23%), Positives = 250/786 (31%), Gaps = 230/786 (29%)
Query: 287 VNTTFVGTVSTKLGSTISYACPEGNMLVGSATRTC----KEGFWTGVAPTC-QYFQLQPM 341
+N + V+ +LG+ + + C EG L GS+ C E W P C Q F P
Sbjct: 325 LNGRVLFPVNLQLGAKVDFVCDEGFQLKGSSASYCVLAGMESLWNSSVPVCEQIFCPSPP 384
Query: 342 DVPN-------LVLYLFLS----------------KLFRESYERLNVD------------ 366
+PN L ++ F L ES R D
Sbjct: 385 VIPNGRHTGKPLEVFPFGKAVNYTCDPHPDRGTSFDLIGESTIRCTSDPQGNGVWSSPAP 444
Query: 367 -CGKLEHIE---HGTVTLETTRTTHGAVAI-----YACHENYTLIGETRRV-CGDGGKWN 416
CG L H + H T+T I Y C Y G + C D W+
Sbjct: 445 RCGILGHCQAPDHFLFAKLKTQTNASDFPIGTSLKYECRPEY--YGRPFSITCLDNLVWS 502
Query: 417 GTEPQCLFDWCAEPPQISGGIV-TTSGRRTGSVATYSCEPGFILFGSNV----------- 464
+ C C PP G+V + + GS YSC G L G +
Sbjct: 503 SPKDVCKRKSCKTPPDPVNGMVHVITDIQVGSRINYSCTTGHRLIGHSSAECILSGNAAH 562
Query: 465 ---------NIDCGRLTAIPYGS-ISYLNETTYLGSEVLYSCS------RNYRLVGHPRR 508
I CG I G IS E + GS V Y C+ + + LVG P
Sbjct: 563 WSTKPPICQRIPCGLPPTIANGDFISTNRENFHYGSVVTYRCNPGSGGRKVFELVGEPSI 622
Query: 509 SCLESK----VWSDTAPKC-------EGKATKDIKVCSN------------------VAV 539
C + +WS AP+C I V N V
Sbjct: 623 YCTSNDDQVGIWSGPAPQCIIPNKCTPPNVENGILVSDNRSLFSLNEVVEFRCQPGFVMK 682
Query: 540 DRREIRCP-----EPTLPAHSILSVTGNDRLYGRTLIKTADSASSVATYKIGALPTL--- 591
R ++C EP LP+ S + D L+ + D+ S P
Sbjct: 683 GPRRVKCQALNKWEPELPSCSRVCQPPPDVLHAERTQRDKDNFSPGQEVFYSCEPGYDLR 742
Query: 592 --------------PAHSILSVTGNDRLYGRTLIKTADSASSVATYKIGALVKYRCERGY 637
PA V D G+ L ++GA V + C+ G+
Sbjct: 743 GAASMRCTPQGDWSPAAPTCEVKSCDDFMGQLL---NGRVLFPVNLQLGAKVDFVCDEGF 799
Query: 638 KVEGEPLSTCEDTGS---WSGSVPECIYVDCGNPETVPNGGFTLTSNATY-YGTAVLYEC 693
+++G S C G W+ SVP C + C +P +PNG T + +G AV Y C
Sbjct: 800 QLKGSSASYCVLAGMESLWNSSVPVCEQIFCPSPPVIPNGRHTGKPLEVFPFGKAVNYTC 859
Query: 694 DEN------YRLEGHARRLCLE----NGTWSSGLPTCKGNEGHARR-------------- 729
D + + L G + C NG WSS P C G GH +
Sbjct: 860 DPHPDRGTSFDLIGESTIRCTSDPQGNGVWSSPAPRC-GILGHCQAPDHFLFAKLKTQTN 918
Query: 730 -------------------------LCLENGTWSSGLPTC--KGCKTPKKSL-------- 754
CL+N WSS C K CKTP +
Sbjct: 919 ASDFPIGTSLKYECRPEYYGRPFSITCLDNLVWSSPKDVCKRKSCKTPPDPVNGMVHVIT 978
Query: 755 -----TRPALSCLPGKRFYYHRGIFRLQNTQKVSYTRTCTKRGT---WSGHIPTCKAIDC 806
+R SC G R H + C G WS P C+ I C
Sbjct: 979 DIQVGSRINYSCTTGHRLIGHS-------------SAECILSGNTAHWSTKPPICQRIPC 1025
Query: 807 SHPGSIDNGRVIIMN-QTTTYNSAVEYHC------VPQYQRIGPYLRKCMED----GSWS 855
P +I NG I N + Y S V Y C ++ +G C + G WS
Sbjct: 1026 GLPPTIANGDFISTNRENFHYGSVVTYRCNLGSRGRKVFELVGEPSIYCTSNDDQVGIWS 1085
Query: 856 GDEPRC 861
G P+C
Sbjct: 1086 GPAPQC 1091
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 169/702 (24%), Positives = 249/702 (35%), Gaps = 157/702 (22%)
Query: 272 ICQHNPANCGSPDRHVNTTFVGTVSTKL--GSTISYAC---PEGNM---LVGSATRTCK- 322
+C+H C +P +N GT S + G ISY C P+ M L+G +T C
Sbjct: 1274 VCEH--IFCPNPPAILNGRHTGTPSGDIPYGKEISYTCDPHPDRGMTFNLIGESTIRCTS 1331
Query: 323 ----EGFWTGVAPTCQYF---------QLQPMDVPNLVLYLF----------------LS 353
G W+ AP C+ + P P + + F
Sbjct: 1332 DPHGNGVWSSPAPRCELSVRAGHCKTPEQFPFASPTIPINDFEFPVGTSLNYECRPGYFG 1391
Query: 354 KLFRES-YERL----------NVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLI 402
K+F S E L CG +G V + T T G+ Y+C+E + LI
Sbjct: 1392 KMFSISCLENLVWSSVEDNCRRKSCGPPPEPFNGMVHINTD-TQFGSTVNYSCNEGFRLI 1450
Query: 403 GETRRVC---GDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGR---RTGSVATYSCEPG 456
G C G+ W+ P C C PP IS G ++ R G+V TY C G
Sbjct: 1451 GSPSTTCLVSGNNVTWDKKAPICEIISCEPPPTISNGDFYSNNRTSFHNGTVVTYQCHTG 1510
Query: 457 ------FILFG------SNVNIDCGRLTAIPYGSISYL---------------NETTYLG 489
F L G ++ + G ++ P IS N + +
Sbjct: 1511 PDGEQLFELVGERSIYCTSKDDQVGVWSSPPPRCISTNKCTAPEVENAIRVPGNRSFFSL 1570
Query: 490 SEVL-YSCSRNYRLVGHPRRSCLESKVWSDTAPKCEGKATKDIKVCSNVAVDRREIRCPE 548
+E++ + C + +VG C + W P C S V EI E
Sbjct: 1571 TEIIRFRCQPGFVMVGSHTVQCQTNGRWGPKLPHC-----------SRVCQPPPEILHGE 1619
Query: 549 PTLPAHSILSVTGNDRLYGRTLIKTADSASSVATYKIGAL-PTLPAHSILSVTGNDRL-- 605
TL +H G + Y A+S+ G P P ++ S +D L
Sbjct: 1620 HTL-SHQDNFSPGQEVFYSCEPSYDLRGAASLHCTPQGDWSPEAPRCTVKSC--DDFLGQ 1676
Query: 606 --YGRTLIKTADSASSVATYKIGALVKYRCERGYKVEGEPLSTCEDTGS---WSGSVPEC 660
+GR L+ ++GA V + C+ G++++G S C G W+ SVP C
Sbjct: 1677 LPHGRVLLPL--------NLQLGAKVSFVCDEGFRLKGRSASHCVLAGMKALWNSSVPVC 1728
Query: 661 IYVDCGNPETVPNGGFTLTSNATY-YGTAVLYECDEN------YRLEGHARRLCLE---- 709
+ C NP + NG T T YG + Y CD + + L G + C
Sbjct: 1729 EQIFCPNPPAILNGRHTGTPFGDIPYGKEISYACDTHPDRGMTFNLIGESSIRCTSDPQG 1788
Query: 710 NGTWSSGLPTCKGNEGHA--RRLCLENGTWSSGLPTCKGCKTPKKSLTRPALS----CLP 763
NG WSS P C+ + A ++NG + G SL P ++ C P
Sbjct: 1789 NGVWSSPAPRCELSVPAACPHPPKIQNGHYIGG----------HVSLYLPGMTISYICDP 1838
Query: 764 GKRFYYHRGIFRLQNTQKVSYTRTCTKRGTWSGHIPTCKAIDCSHPGSIDN-GRVIIMNQ 822
G IF CT +G WS CK ++CS P ++ + + M +
Sbjct: 1839 GYLLVGKGFIF-------------CTDQGIWSQLDHYCKEVNCSFPLFMNGISKELEMKK 1885
Query: 823 TTTYNSAVEYHCVPQYQRIGPYLRKCMEDGSWSGDEPRCEKR 864
Y V C Y G +C D W +C R
Sbjct: 1886 VYHYGDYVTLKCEDGYTLEGSPWSQCQADDRWDPPLAKCTSR 1927
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 152/644 (23%), Positives = 222/644 (34%), Gaps = 162/644 (25%)
Query: 266 LDYLHW-----ICQHNPANCGSPDRHVNTTFVGTVSTKLGSTISYACPEGNMLVGSATRT 320
LD L W +C+ +C +P VN ++GS I+Y+C G+ L+G ++
Sbjct: 946 LDNLVWSSPKDVCKRK--SCKTPPDPVNGMVHVITDIQVGSRINYSCTTGHRLIGHSSAE 1003
Query: 321 C----KEGFWTGVAPTCQYFQLQPMDVPNLVLYLFLSKLFRESYERLNVDCGKLEHIEHG 376
C W+ P CQ + CG I +G
Sbjct: 1004 CILSGNTAHWSTKPPICQ-----------------------------RIPCGLPPTIANG 1034
Query: 377 TVTLETTRTTH-GAVAIYACH------ENYTLIGETRRVCGDG----GKWNGTEPQCLFD 425
H G+V Y C+ + + L+GE C G W+G PQC+
Sbjct: 1035 DFISTNRENFHYGSVVTYRCNLGSRGRKVFELVGEPSIYCTSNDDQVGIWSGPAPQCIIP 1094
Query: 426 WCAEPPQISGGIVTTSGRRTGSVATYSCEPGFILFGSNVNIDCGRLTAIPYGSISYLNET 485
PP + GI+ + R S+ LNE
Sbjct: 1095 NKCTPPNVENGILVSDNR----------------------------------SLFSLNEV 1120
Query: 486 TYLGSEVLYSCSRNYRLVGHPRRSCLESKVWSDTAPKCEGKATKDIKVCSNVAVDRREIR 545
V + C + + G R C W P C S V EI
Sbjct: 1121 ------VEFRCQPGFVMKGPRRVKCQALNKWEPELPSC-----------SRVCQPPPEIL 1163
Query: 546 CPEPTLPAHSILSVTGNDRLYGRTLIKTADSASSVATYKIGAL-PTLPAHSILSVTGNDR 604
E T P+H G + Y A+S+ G P P ++ S +D
Sbjct: 1164 HGEHT-PSHQDNFSPGQEVFYSCEPGYDLRGAASLHCTPQGDWSPEAPRCAVKSC--DDF 1220
Query: 605 L----YGRTLIKTADSASSVATYKIGALVKYRCERGYKVEGEPLSTCEDTGS---WSGSV 657
L +GR L ++GA V + C+ G++++G +S C G W+ SV
Sbjct: 1221 LGQLPHGRVLFPL--------NLQLGAKVSFVCDEGFRLKGSSVSHCVLVGMRSLWNNSV 1272
Query: 658 PECIYVDCGNPETVPNGGFTLT-SNATYYGTAVLYECDEN------YRLEGHARRLCLE- 709
P C ++ C NP + NG T T S YG + Y CD + + L G + C
Sbjct: 1273 PVCEHIFCPNPPAILNGRHTGTPSGDIPYGKEISYTCDPHPDRGMTFNLIGESTIRCTSD 1332
Query: 710 ---NGTWSSGLPTCKGNEGHARRLCLENGTWSSGLPTCKGCKTPKKSLTRPALSCLPGKR 766
NG WSS P C+ L + G CKTP++ A +P
Sbjct: 1333 PHGNGVWSSPAPRCE--------LSVRAGH----------CKTPEQFPF--ASPTIPIND 1372
Query: 767 FYYHRGIFRLQNTQKVSY-----TRTCTKRGTWSGHIPTCKAIDCSHPGSIDNGRVIIMN 821
F + G L + Y + +C + WS C+ C P NG V I N
Sbjct: 1373 FEFPVGT-SLNYECRPGYFGKMFSISCLENLVWSSVEDNCRRKSCGPPPEPFNGMVHI-N 1430
Query: 822 QTTTYNSAVEYHCVPQYQRIGPYLRKCMEDG---SWSGDEPRCE 862
T + S V Y C ++ IG C+ G +W P CE
Sbjct: 1431 TDTQFGSTVNYSCNEGFRLIGSPSTTCLVSGNNVTWDKKAPICE 1474
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 149/615 (24%), Positives = 201/615 (32%), Gaps = 178/615 (28%)
Query: 408 VCGDGGKWNGTEPQCLFDWCAEPPQISGGIV-TTSGRRTGSVATYSCEPGFILFGSNV-- 464
+C W G + +C C PP G+V G + GS YSC G+ L GS+
Sbjct: 44 ICLKNSVWTGAKDRCRRKSCRNPPDPVNGMVHVIKGIQFGSQIKYSCTKGYRLIGSSSAT 103
Query: 465 ------------------NIDCGRLTAIPYGS-ISYLNETTYLGSEVLYSCS------RN 499
I CG I G IS E + GS V Y C+ +
Sbjct: 104 CIISGDTVIWDNETPICDRIPCGLPPTITNGDFISTNRENFHYGSVVTYRCNPGSGGRKV 163
Query: 500 YRLVGHPRRSCLESK----VWSDTAPKC-------EGKATKDIKVCSN------------ 536
+ LVG P C + +WS AP+C I V N
Sbjct: 164 FELVGEPSIYCTSNDDQVGIWSGPAPQCIIPNKCTPPNVENGILVSDNRSLFSLNEVVEF 223
Query: 537 ------VAVDRREIRCP-----EPTLPAHSILSVTGNDRLYGRTLIKTADSASSVATYKI 585
V R ++C EP LP+ S + D L+ + D+ S
Sbjct: 224 RCQPGFVMKGPRRVKCQALNKWEPELPSCSRVCQPPPDVLHAERTQRDKDNFSPGQEVFY 283
Query: 586 GALPTL-----------------PAHSILSVTGNDRLYGRTLIKTADSASSVATYKIGAL 628
P PA V D G+ L ++GA
Sbjct: 284 SCEPGYDLRGAASMRCTPQGDWSPAAPTCEVKSCDDFMGQLL---NGRVLFPVNLQLGAK 340
Query: 629 VKYRCERGYKVEGEPLSTCEDTGS---WSGSVPECIYVDCGNPETVPNGGFTLTSNATY- 684
V + C+ G++++G S C G W+ SVP C + C +P +PNG T +
Sbjct: 341 VDFVCDEGFQLKGSSASYCVLAGMESLWNSSVPVCEQIFCPSPPVIPNGRHTGKPLEVFP 400
Query: 685 YGTAVLYECDEN------YRLEGHARRLCLE----NGTWSSGLPTCKGNEGHARR----- 729
+G AV Y CD + + L G + C NG WSS P C G GH +
Sbjct: 401 FGKAVNYTCDPHPDRGTSFDLIGESTIRCTSDPQGNGVWSSPAPRC-GILGHCQAPDHFL 459
Query: 730 ----------------------------------LCLENGTWSSGLPTC--KGCKTPKKS 753
CL+N WSS C K CKTP
Sbjct: 460 FAKLKTQTNASDFPIGTSLKYECRPEYYGRPFSITCLDNLVWSSPKDVCKRKSCKTPPDP 519
Query: 754 L-------------TRPALSCLPGKRFYYHRGIFRLQNTQKVSYTRTCTKRGT---WSGH 797
+ +R SC G R H + C G WS
Sbjct: 520 VNGMVHVITDIQVGSRINYSCTTGHRLIGHS-------------SAECILSGNAAHWSTK 566
Query: 798 IPTCKAIDCSHPGSIDNGRVIIMN-QTTTYNSAVEYHCVP------QYQRIGPYLRKCME 850
P C+ I C P +I NG I N + Y S V Y C P ++ +G C
Sbjct: 567 PPICQRIPCGLPPTIANGDFISTNRENFHYGSVVTYRCNPGSGGRKVFELVGEPSIYCTS 626
Query: 851 D----GSWSGDEPRC 861
+ G WSG P+C
Sbjct: 627 NDDQVGIWSGPAPQC 641
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 153/675 (22%), Positives = 224/675 (33%), Gaps = 169/675 (25%)
Query: 300 GSTISYACPEGNMLVGSATRTC-KEGFWTGVAPTCQYFQLQPMDVPNLVLYLFLSKLFRE 358
G + Y+C G L G+A+ C +G W+ APTC+ F+ +L
Sbjct: 278 GQEVFYSCEPGYDLRGAASMRCTPQGDWSPAAPTCEVKSCDD----------FMGQLL-- 325
Query: 359 SYERLNVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGK---W 415
+G V L GA + C E + L G + C G W
Sbjct: 326 ----------------NGRV-LFPVNLQLGAKVDFVCDEGFQLKGSSASYCVLAGMESLW 368
Query: 416 NGTEPQCLFDWCAEPPQISGGIVTTSGRRT---GSVATYSCEP------GFILFGSNVNI 466
N + P C +C PP I G T G Y+C+P F L G + I
Sbjct: 369 NSSVPVCEQIFCPSPPVIPNGRHTGKPLEVFPFGKAVNYTCDPHPDRGTSFDLIGEST-I 427
Query: 467 DC--------------------GRLTAIPYGSISYLNETTY-----LGSEVLYSCSRNYR 501
C G A + + L T +G+ + Y C Y
Sbjct: 428 RCTSDPQGNGVWSSPAPRCGILGHCQAPDHFLFAKLKTQTNASDFPIGTSLKYECRPEY- 486
Query: 502 LVGHPRR-SCLESKVWSDTAPKCEGKATKD--------IKVCSNVAVDRREIRCPEPTLP 552
G P +CL++ VWS C+ K+ K + V +++ V R
Sbjct: 487 -YGRPFSITCLDNLVWSSPKDVCKRKSCKTPPDPVNGMVHVITDIQVGSR---------- 535
Query: 553 AHSILSVTGNDRLYGRTLIKTADSASSVA-TYKIGALPTLPAHSILSVTGNDRLYGRTLI 611
S T RL G + + S ++ + K +P ++ D +
Sbjct: 536 --INYSCTTGHRLIGHSSAECILSGNAAHWSTKPPICQRIPCGLPPTIANGDFI------ 587
Query: 612 KTADSASSVATYKIGALVKYRCERG------YKVEGEPLSTC----EDTGSWSGSVPECI 661
+++ + G++V YRC G +++ GEP C + G WSG P+CI
Sbjct: 588 -----STNRENFHYGSVVTYRCNPGSGGRKVFELVGEPSIYCTSNDDQVGIWSGPAPQCI 642
Query: 662 YVDCGNPETVPNGGFTLTSNATY-YGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTC 720
+ P V NG + + + V + C + ++G R C W LP+C
Sbjct: 643 IPNKCTPPNVENGILVSDNRSLFSLNEVVEFRCQPGFVMKGPRRVKCQALNKWEPELPSC 702
Query: 721 K------------------------GNE------------GHARRLCLENGTWSSGLPTC 744
G E G A C G WS PTC
Sbjct: 703 SRVCQPPPDVLHAERTQRDKDNFSPGQEVFYSCEPGYDLRGAASMRCTPQGDWSPAAPTC 762
Query: 745 --KGCKTPKKSLTR-----PALSCLPGKRFYYHRGIFRLQNTQKVSYTRTCTKRGTWSGH 797
K C L P L K + F+L+ + SY W+
Sbjct: 763 EVKSCDDFMGQLLNGRVLFPVNLQLGAKVDFVCDEGFQLKGS-SASYCVLAGMESLWNSS 821
Query: 798 IPTCKAIDCSHPGSIDNGRVIIMN-QTTTYNSAVEYHCVPQYQR------IGPYLRKCME 850
+P C+ I C P I NGR + + AV Y C P R IG +C
Sbjct: 822 VPVCEQIFCPSPPVIPNGRHTGKPLEVFPFGKAVNYTCDPHPDRGTSFDLIGESTIRCTS 881
Query: 851 D----GSWSGDEPRC 861
D G WS PRC
Sbjct: 882 DPQGNGVWSSPAPRC 896
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 119/328 (36%), Gaps = 71/328 (21%)
Query: 620 VATYKIGALVKYRCERGYKVEGEPLSTC---EDTGSWSGSVPECIYVDCGNPETVPNGGF 676
+ + G+ +KY C +GY++ G +TC DT W P C + CG P T+ NG F
Sbjct: 77 IKGIQFGSQIKYSCTKGYRLIGSSSATCIISGDTVIWDNETPICDRIPCGLPPTITNGDF 136
Query: 677 TLTSNATY-YGTAVLYECDEN------YRLEGHARRLCLEN----GTWSSGLPTC----- 720
T+ + YG+ V Y C+ + L G C N G WS P C
Sbjct: 137 ISTNRENFHYGSVVTYRCNPGSGGRKVFELVGEPSIYCTSNDDQVGIWSGPAPQCIIPNK 196
Query: 721 -------------------KGNE-------------GHARRLCLENGTWSSGLPTC-KGC 747
NE G R C W LP+C + C
Sbjct: 197 CTPPNVENGILVSDNRSLFSLNEVVEFRCQPGFVMKGPRRVKCQALNKWEPELPSCSRVC 256
Query: 748 KTPKKSL-----TRPALSCLPGKRFYYH-RGIFRLQNTQKVSYTRTCTKRGTWSGHIPTC 801
+ P L R + PG+ +Y + L+ + CT +G WS PTC
Sbjct: 257 QPPPDVLHAERTQRDKDNFSPGQEVFYSCEPGYDLRGAASMR----CTPQGDWSPAAPTC 312
Query: 802 KAIDC-SHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCMEDGS---WSGD 857
+ C G + NGRV + + V++ C +Q G C+ G W+
Sbjct: 313 EVKSCDDFMGQLLNGRV-LFPVNLQLGAKVDFVCDEGFQLKGSSASYCVLAGMESLWNSS 371
Query: 858 EPRCEKRFNSGIP----GRSRRSPINSF 881
P CE+ F P GR P+ F
Sbjct: 372 VPVCEQIFCPSPPVIPNGRHTGKPLEVF 399
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 99/249 (39%), Gaps = 24/249 (9%)
Query: 623 YKIGALVKYRCERGYKVEGEPLST-CEDTGSWSGSVPECIYVDCGNPETVPNGGFTLTSN 681
+ IG + Y C GY G P S C W+G+ C C NP P G
Sbjct: 22 FPIGTYLNYECRPGYS--GRPFSIICLKNSVWTGAKDRCRRKSCRNPPD-PVNGMVHVIK 78
Query: 682 ATYYGTAVLYECDENYRLEGHARRLCLENG---TWSSGLPTCKGNEGHARRLCLENGTWS 738
+G+ + Y C + YRL G + C+ +G W + P C R C T +
Sbjct: 79 GIQFGSQIKYSCTKGYRLIGSSSATCIISGDTVIWDNETPICD------RIPCGLPPTIT 132
Query: 739 SGLPTCKGCKTPKKSLTRPAL---SCLPGKRFYYHRGIFRLQNTQKVSYTRTCTKRGTWS 795
+G T +++ ++ C PG R +F L + T + G WS
Sbjct: 133 NG----DFISTNRENFHYGSVVTYRCNPGSG---GRKVFELVGEPSIYCTSNDDQVGIWS 185
Query: 796 GHIPTCKAIDCSHPGSIDNGRVIIMNQTT-TYNSAVEYHCVPQYQRIGPYLRKCMEDGSW 854
G P C + P +++NG ++ N++ + N VE+ C P + GP KC W
Sbjct: 186 GPAPQCIIPNKCTPPNVENGILVSDNRSLFSLNEVVEFRCQPGFVMKGPRRVKCQALNKW 245
Query: 855 SGDEPRCEK 863
+ P C +
Sbjct: 246 EPELPSCSR 254
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 90/272 (33%), Gaps = 68/272 (25%)
Query: 295 VSTKLGSTISYACPEGNMLVGSATRTC----KEGFWTGVAPTC-QYFQLQPMDVPNLVLY 349
++ +LG+ +S+ C EG L G + C + W P C Q F P + N
Sbjct: 1686 LNLQLGAKVSFVCDEGFRLKGRSASHCVLAGMKALWNSSVPVCEQIFCPNPPAILN---- 1741
Query: 350 LFLSKLFRESYERLNVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHEN------YTLIG 403
G+ G + +G YAC + + LIG
Sbjct: 1742 ------------------GRHTGTPFGDIP-------YGKEISYACDTHPDRGMTFNLIG 1776
Query: 404 ETRRVCGD----GGKWNGTEPQCLFD---WCAEPPQISGGIVT---TSGRRTGSVATYSC 453
E+ C G W+ P+C C PP+I G S G +Y C
Sbjct: 1777 ESSIRCTSDPQGNGVWSSPAPRCELSVPAACPHPPKIQNGHYIGGHVSLYLPGMTISYIC 1836
Query: 454 EPGFILFG------------SNVNIDCGRLT---AIPYGSISY---LNETTYLGSEVLYS 495
+PG++L G S ++ C + + IS + + + G V
Sbjct: 1837 DPGYLLVGKGFIFCTDQGIWSQLDHYCKEVNCSFPLFMNGISKELEMKKVYHYGDYVTLK 1896
Query: 496 CSRNYRLVGHPRRSCLESKVWSDTAPKCEGKA 527
C Y L G P C W KC +A
Sbjct: 1897 CEDGYTLEGSPWSQCQADDRWDPPLAKCTSRA 1928
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Query: 784 YTRTCTKRGTWSGHIPTCKAIDCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGP 843
++ C K W+G C+ C +P NG V ++ + + S ++Y C Y+ IG
Sbjct: 41 FSIICLKNSVWTGAKDRCRRKSCRNPPDPVNGMVHVI-KGIQFGSQIKYSCTKGYRLIGS 99
Query: 844 YLRKCMEDGS---WSGDEPRCEKRFNSGIP 870
C+ G W + P C+ R G+P
Sbjct: 100 SSATCIISGDTVIWDNETPICD-RIPCGLP 128
>pdb|2GSX|A Chain A, Complement Receptor Type 2
Length = 951
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 159/726 (21%), Positives = 244/726 (33%), Gaps = 171/726 (23%)
Query: 280 CGSPDRHVNTTFVGT--VSTKLGSTISYAC---PEGN---MLVGSATRTC-----KEGFW 326
C SP +N +G + GS ++Y C PE +L+G +T C K G W
Sbjct: 256 CPSPPPILNGRHIGNSLANVSYGSIVTYTCDPDPEEGVNFILIGESTLRCTVDSQKTGTW 315
Query: 327 TGVAPTCQYFQLQPMDVPNLVLYLFLSKLFRESYERLNVDCGKLEHIEHGTVTLETTRTT 386
+G AP C+ V C + + V+ + R T
Sbjct: 316 SGPAPRCEL-------------------------STSAVQCPHPQILRGRMVSGQKDRYT 350
Query: 387 HGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGR--- 443
+ I+AC +TL G + C G W + P C + C PP I G
Sbjct: 351 YNDTVIFACMFGFTLKGSKQIRCNAQGTWEPSAPVCEKE-CQAPPNILNGQKEDRHMVRF 409
Query: 444 RTGSVATYSCEPGFILFGSNVNIDCGR----LTAIPYGSISYLNET----------TYLG 489
G+ YSC PG++L G +I C +P ++ T ++
Sbjct: 410 DPGTSIKYSCNPGYVLVGEE-SIQCTSEGVWTPPVPQCKVAACEATGRQLLTKPQHQFVR 468
Query: 490 SEVLYSCSRNYRLVGHPRRSCLESKVWSDTAPKCE----------------GKATKDIKV 533
+V SC Y+L G + C + W C+ G + +D
Sbjct: 469 PDVNSSCGEGYKLSGSVYQECQGTIPWFMEIRLCKEITCPPPPVIYNGAHTGSSLEDFPY 528
Query: 534 CSNVA--VDRREIRCPEPTLPAHSILSVTGNDRLYGR----------TLIKTADSASSVA 581
+ V + R E +L S + T ND+ G +L+ S +A
Sbjct: 529 GTTVTYTCNPGPERGVEFSLIGESTIRCTSNDQERGTWSGPAPLCKLSLLAVQCSHVHIA 588
Query: 582 T-YKIGALP---------TLPAHSILSVTGNDRLYGR---------------TLIKTADS 616
YKI T +S ++ G+ ++ + T S
Sbjct: 589 NGYKISGKEAPYFYNDTVTFKCYSGFTLKGSSQIRCKADNTWDPEIPVCEKETCQHVRQS 648
Query: 617 ASSVATYKIGALVKYRCERGYKVEGEPLSTCEDT--GSWSGSVPECIYVDCGNPETVPNG 674
+ LV C+ GY++ G C+D G W +P C + C P + NG
Sbjct: 649 LQELPAGSRVELVNTSCQDGYQLTGHAYQMCQDAENGIWFKKIPLCKVIHCHPPPVIVNG 708
Query: 675 GFT-LTSNATYYGTAVLYECDENYRLEGHARRLCLEN----GTWSSGLPTC--------- 720
T + + YG V YECD+ + L G + C + G+WS P C
Sbjct: 709 KHTGMMAENFLYGNEVSYECDQGFYLLGEKKLQCRSDSKGHGSWSGPSPQCLRSPPVTRC 768
Query: 721 ---------KGNEGHARR----------------------LCLENGTWSSGLPTCK---- 745
K N+ H+ C + TW G+PTC
Sbjct: 769 PNPEVKHGYKLNKTHSAYSHNDIVYVDCNPGFIMNGSRVIRCHTDNTWVPGVPTCIKKAF 828
Query: 746 -GCKTPKKSLTRPALSCLPGKRFYYHRGIFRLQNTQKV-----SYTRTCTKRGTWSGHIP 799
GC P K+ P + G + G+ L + + CT GTWS P
Sbjct: 829 IGCPPPPKT---PNGNHTGGNIARFSPGMSILYSCDQGYLLVGEALLLCTHEGTWSQPAP 885
Query: 800 TCKAIDCSHPGSIDN-GRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCMEDGSWSGDE 858
CK ++CS P +D + + + Y + V C Y G +C D W+
Sbjct: 886 HCKEVNCSSPADMDGIQKGLEPRKMYQYGAVVTLECEDGYMLEGSPQSQCQSDHQWNPPL 945
Query: 859 PRCEKR 864
C R
Sbjct: 946 AVCRSR 951
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 147/712 (20%), Positives = 244/712 (34%), Gaps = 150/712 (21%)
Query: 286 HVNTTFVGTVSTKLGSTISYACPEGNMLVGSATRTC-KEGFWTGVAPTCQ--------YF 336
H + VG+++ L +++Y+C G +LVG C G W+ V PTC+ F
Sbjct: 144 HHTSENVGSIAPGL--SVTYSCESGYLLVGEKIINCLSSGKWSAVPPTCEEARCKSLGRF 201
Query: 337 QLQPMDVPNLVLYLFLSKLFRESYERLN------------------------VDCGKLEH 372
+ P ++ + F + RL + C
Sbjct: 202 PNGKVKEPPILRVGVTANFFCDEGYRLQGPPSSRCVIAGQGVAWTKMPVCEEIFCPSPPP 261
Query: 373 IEHGT-VTLETTRTTHGAVAIYACHE------NYTLIGETRRVC----GDGGKWNGTEPQ 421
I +G + ++G++ Y C N+ LIGE+ C G W+G P+
Sbjct: 262 ILNGRHIGNSLANVSYGSIVTYTCDPDPEEGVNFILIGESTLRCTVDSQKTGTWSGPAPR 321
Query: 422 CLFD----WCAEPPQISGGIVTTSGRRT--GSVATYSCEPGFILFGSN---VNID----- 467
C C P + G +V+ R ++C GF L GS N
Sbjct: 322 CELSTSAVQCPHPQILRGRMVSGQKDRYTYNDTVIFACMFGFTLKGSKQIRCNAQGTWEP 381
Query: 468 ----CGRLTAIPYGSISYLNETTYL-----GSEVLYSCSRNYRLVGHPRRSCLESKVWSD 518
C + P ++ E ++ G+ + YSC+ Y LVG C VW+
Sbjct: 382 SAPVCEKECQAPPNILNGQKEDRHMVRFDPGTSIKYSCNPGYVLVGEESIQCTSEGVWTP 441
Query: 519 TAPKCEGKATKDIKVCSNVAVDRREIRCPEPTLPAHSILSVTGND-RLYGRTLIKTADSA 577
P+C KV + A R+ + P+ + S G +L G + +
Sbjct: 442 PVPQC--------KVAACEATGRQLLTKPQHQFVRPDVNSSCGEGYKLSGSVYQECQGTI 493
Query: 578 SSVATYKIGALPTLPAHSILSVTGNDRLYGRTLIKTADSASSVATYKIGALVKYRC---- 633
++ T P ++ A + SS+ + G V Y C
Sbjct: 494 PWFMEIRLCKEITCPPPPVI-------------YNGAHTGSSLEDFPYGTTVTYTCNPGP 540
Query: 634 ERG--YKVEGEPLSTC----EDTGSWSGSVPEC----IYVDCGNPETVPNGGFTLTSNAT 683
ERG + + GE C ++ G+WSG P C + V C + +
Sbjct: 541 ERGVEFSLIGESTIRCTSNDQERGTWSGPAPLCKLSLLAVQCSHVHIANGYKISGKEAPY 600
Query: 684 YYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTCKGNE------------------- 724
+Y V ++C + L+G ++ C + TW +P C+
Sbjct: 601 FYNDTVTFKCYSGFTLKGSSQIRCKADNTWDPEIPVCEKETCQHVRQSLQELPAGSRVEL 660
Query: 725 ------------GHARRLC--LENGTWSSGLPTCKGCKT-PKKSLTRPALSCLPGKRFYY 769
GHA ++C ENG W +P CK P + + + + F Y
Sbjct: 661 VNTSCQDGYQLTGHAYQMCQDAENGIWFKKIPLCKVIHCHPPPVIVNGKHTGMMAENFLY 720
Query: 770 HRGI-------FRLQNTQKVSYTRTCTKRGTWSGHIPTC----KAIDCSHPGSIDNGRVI 818
+ F L +K+ G+WSG P C C +P ++
Sbjct: 721 GNEVSYECDQGFYLLGEKKLQCRSDSKGHGSWSGPSPQCLRSPPVTRCPNPEVKHGYKLN 780
Query: 819 IMNQTTTYNSAVEYHCVPQYQRIGPYLRKCMEDGSWSGDEPRCEKRFNSGIP 870
+ ++N V C P + G + +C D +W P C K+ G P
Sbjct: 781 KTHSAYSHNDIVYVDCNPGFIMNGSRVIRCHTDNTWVPGVPTCIKKAFIGCP 832
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 139/607 (22%), Positives = 209/607 (34%), Gaps = 142/607 (23%)
Query: 365 VDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC----GDGGKWNGTEP 420
+ CG I +G ++ +T G V Y+C + LIGE +C G W+ P
Sbjct: 1 ISCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAP 60
Query: 421 QC----LFDWCAEPPQISGG--IVTTSGRRTGSVATYSCEPGFILFG------------- 461
+C + C E P + GG I ++ R G T++C+ F + G
Sbjct: 61 KCEYFNKYSSCPE-PIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWG 119
Query: 462 --------SNVNIDCGRLTAIPYGSISYLNETTYL-GSEVLYSCSRNYRLVGHPRRSCLE 512
S ++C L I G + N + G V YSC Y LVG +CL
Sbjct: 120 PTRLPTCVSVFPLECPALPMIHNGHHTSENVGSIAPGLSVTYSCESGYLLVGEKIINCLS 179
Query: 513 SKVWSDTAPKCEGKATKDIKVCSNVAVDRREIRCPEPTLPAHSILSVTGND------RLY 566
S WS P CE K + N V I + VT N RL
Sbjct: 180 SGKWSAVPPTCEEARCKSLGRFPNGKVKEPPIL----------RVGVTANFFCDEGYRLQ 229
Query: 567 GRTLIKTADSASSVATYKIGALPTLPAHSILSVTGNDRLYGRTLIKTADSASSVATYKIG 626
G + + VA K+ I + L GR + +S+A G
Sbjct: 230 GPPSSRCVIAGQGVAWTKMPV-----CEEIFCPSPPPILNGRHI------GNSLANVSYG 278
Query: 627 ALVKYRCER------GYKVEGEPLSTC----EDTGSWSGSVPECIY----VDCGNPETVP 672
++V Y C+ + + GE C + TG+WSG P C V C +P+ +
Sbjct: 279 SIVTYTCDPDPEEGVNFILIGESTLRCTVDSQKTGTWSGPAPRCELSTSAVQCPHPQILR 338
Query: 673 NGGFTLTSNATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTC------------ 720
+ + Y V++ C + L+G + C GTW P C
Sbjct: 339 GRMVSGQKDRYTYNDTVIFACMFGFTLKGSKQIRCNAQGTWEPSAPVCEKECQAPPNILN 398
Query: 721 -KGNEGHARRL-----------------------CLENGTWSSGLPTCK--GCKT----- 749
+ + H R C G W+ +P CK C+
Sbjct: 399 GQKEDRHMVRFDPGTSIKYSCNPGYVLVGEESIQCTSEGVWTPPVPQCKVAACEATGRQL 458
Query: 750 ---PKKSLTRPALSCLPGKRFYYHRGIFRLQNTQKVSYTRTCTKRGTWSGHIPTCKAIDC 806
P+ RP ++ G+ + ++ + C W I CK I C
Sbjct: 459 LTKPQHQFVRPDVNSSCGEGYKLSGSVY-----------QECQGTIPWFMEIRLCKEITC 507
Query: 807 SHPGSIDNGRVIIMN-QTTTYNSAVEYHCVP------QYQRIGPYLRKC----MEDGSWS 855
P I NG + + Y + V Y C P ++ IG +C E G+WS
Sbjct: 508 PPPPVIYNGAHTGSSLEDFPYGTTVTYTCNPGPERGVEFSLIGESTIRCTSNDQERGTWS 567
Query: 856 GDEPRCE 862
G P C+
Sbjct: 568 GPAPLCK 574
Score = 96.3 bits (238), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 114/442 (25%), Positives = 158/442 (35%), Gaps = 96/442 (21%)
Query: 466 IDCGRLTAIPYGSISYLNETTYLGSEVLYSCSRNYRLVGHPRRSCL-ESKV---WSDTAP 521
I CG I G ISY + +G+ + YSCS +RL+G C+ + KV W AP
Sbjct: 1 ISCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAP 60
Query: 522 KCEGKATKDIKVCSNVAVDRREIRCPEPTLPAHSILSVTGNDRLYGRTLIKTADSASSVA 581
KCE + CPEP +P G ++ G T + DS
Sbjct: 61 KCE--------------YFNKYSSCPEPIVP--------GGYKIRGSTPYRHGDSV---- 94
Query: 582 TYKIGALPTLPAHSILSVTGN-------DRLYGRTLIKTADS------------------ 616
T + S+ GN + ++G T + T S
Sbjct: 95 --------TFACKTNFSMNGNKSVWCQANNMWGPTRLPTCVSVFPLECPALPMIHNGHHT 146
Query: 617 ASSVATYKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGF 676
+ +V + G V Y CE GY + GE + C +G WS P C C + PNG
Sbjct: 147 SENVGSIAPGLSVTYSCESGYLLVGEKIINCLSSGKWSAVPPTCEEARCKSLGRFPNGKV 206
Query: 677 TLTSNATYYGTAVLYECDENYRLEGHARRLCLENG---TWSSGLPTCKGNEGHARRLCLE 733
G + CDE YRL+G C+ G W+ +P C E
Sbjct: 207 K-EPPILRVGVTANFFCDEGYRLQGPPSSRCVIAGQGVAWTK-MPVC------------E 252
Query: 734 NGTWSSGLPTCKGCKTPKKSLTRPA------LSCLPGKRFYYHRGI-FRLQNTQKVSYTR 786
S P G + SL + +C P G+ F L + T
Sbjct: 253 EIFCPSPPPILNG-RHIGNSLANVSYGSIVTYTCDPDPE----EGVNFILIGESTLRCTV 307
Query: 787 TCTKRGTWSGHIPTCK----AIDCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIG 842
K GTWSG P C+ A+ C HP + V TYN V + C+ + G
Sbjct: 308 DSQKTGTWSGPAPRCELSTSAVQCPHPQILRGRMVSGQKDRYTYNDTVIFACMFGFTLKG 367
Query: 843 PYLRKCMEDGSWSGDEPRCEKR 864
+C G+W P CEK
Sbjct: 368 SKQIRCNAQGTWEPSAPVCEKE 389
Score = 89.7 bits (221), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 126/552 (22%), Positives = 187/552 (33%), Gaps = 95/552 (17%)
Query: 365 VDCGKLEHIEHGTVTLETTRTTHGAVAI-YACHENYTLIGETRRVCGDGGKWNGTEPQCL 423
++C L I +G T E + +++ Y+C Y L+GE C GKW+ P C
Sbjct: 132 LECPALPMIHNGHHTSENVGSIAPGLSVTYSCESGYLLVGEKIINCLSSGKWSAVPPTCE 191
Query: 424 FDWCAEPPQISGGIVTTSG-RRTGSVATYSCEPGFILFG--------------------- 461
C + G V R G A + C+ G+ L G
Sbjct: 192 EARCKSLGRFPNGKVKEPPILRVGVTANFFCDEGYRLQGPPSSRCVIAGQGVAWTKMPVC 251
Query: 462 ------SNVNIDCGRLTAIPYGSISYLNETTYLGSEVLYSCSR------NYRLVGHPRRS 509
S I GR ++SY GS V Y+C N+ L+G
Sbjct: 252 EEIFCPSPPPILNGRHIGNSLANVSY-------GSIVTYTCDPDPEEGVNFILIGESTLR 304
Query: 510 CL----ESKVWSDTAPKCEGKATKDIKVCSNVAVDRREIRCPEPTLPAHSILSVTGNDRL 565
C ++ WS AP+CE + ++CP P + ++S +
Sbjct: 305 CTVDSQKTGTWSGPAPRCE--------------LSTSAVQCPHPQILRGRMVSGQKDRYT 350
Query: 566 YGRTLI------KTADSASSVATYKIGAL-PTLPAHSILSVTGNDRLYGRTLIKTADSAS 618
Y T+I T + + G P+ P V + ++
Sbjct: 351 YNDTVIFACMFGFTLKGSKQIRCNAQGTWEPSAP------VCEKECQAPPNILNGQKEDR 404
Query: 619 SVATYKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGFTL 678
+ + G +KY C GY + GE C G W+ VP+C C G L
Sbjct: 405 HMVRFDPGTSIKYSCNPGYVLVGEESIQCTSEGVWTPPVPQCKVAACEA-----TGRQLL 459
Query: 679 TS-NATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTCKGNEGHARRLCLENGTW 737
T + V C E Y+L G + C W + CK C
Sbjct: 460 TKPQHQFVRPDVNSSCGEGYKLSGSVYQECQGTIPWFMEIRLCK------EITCPPPPVI 513
Query: 738 SSGLPTCKGCKTPKKSLTRPALSCLPGKRFYYHRGI-FRLQNTQKVSYTRTCTKRGTWSG 796
+G T + T +C PG RG+ F L + T +RGTWSG
Sbjct: 514 YNGAHTGSSLEDFPYGTTV-TYTCNPGPE----RGVEFSLIGESTIRCTSNDQERGTWSG 568
Query: 797 HIPTCK----AIDCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCMEDG 852
P CK A+ CSH + ++ YN V + C + G +C D
Sbjct: 569 PAPLCKLSLLAVQCSHVHIANGYKISGKEAPYFYNDTVTFKCYSGFTLKGSSQIRCKADN 628
Query: 853 SWSGDEPRCEKR 864
+W + P CEK
Sbjct: 629 TWDPEIPVCEKE 640
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 105/263 (39%), Gaps = 42/263 (15%)
Query: 625 IGALVKYRCERGYKVEGEPLSTC----EDTGSWSGSVPECIYVD--CGNPETVPNGGFTL 678
+G +++Y C +++ GE C + G+W P+C Y + PE + GG+ +
Sbjct: 23 VGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAPKCEYFNKYSSCPEPIVPGGYKI 82
Query: 679 TSNATY-YGTAVLYECDENYRLEGHARRLCLENGTWS-SGLPTCKGN---EGHARRLCLE 733
+ Y +G +V + C N+ + G+ C N W + LPTC E A + +
Sbjct: 83 RGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWGPTRLPTCVSVFPLECPALPM-IH 141
Query: 734 NGTWSSGLPTCKGCKTPKKSLTRPALSCLPGKRFYYHRGIFRLQNTQKVSYTRTCTKRGT 793
NG +S G P S+T SC G + I C G
Sbjct: 142 NGHHTS---ENVGSIAPGLSVT---YSCESGYLLVGEKII-------------NCLSSGK 182
Query: 794 WSGHIPTCKAIDCSHPGSIDNGRV---IIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCME 850
WS PTC+ C G NG+V I+ T N + C Y+ GP +C+
Sbjct: 183 WSAVPPTCEEARCKSLGRFPNGKVKEPPILRVGVTAN----FFCDEGYRLQGPPSSRCVI 238
Query: 851 DG---SWSGDEPRCEKRFNSGIP 870
G +W+ P CE+ F P
Sbjct: 239 AGQGVAWT-KMPVCEEIFCPSPP 260
>pdb|1HAQ|A Chain A, Four Models Of Human Factor H Determined By Solution
Scattering Curve-Fitting And Homology Modelling
Length = 1213
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 136/589 (23%), Positives = 232/589 (39%), Gaps = 97/589 (16%)
Query: 298 KLGSTISYACPEGNMLVGSATRTCKEGFWTGVAPTCQYFQLQPMDVPNLVLYLFLSKLFR 357
K+G + ++C G +VG + C +F L P D+P + +
Sbjct: 570 KVGEVLKFSCKPGFTIVGPNSV------------QCYHFGLSP-DLP----------ICK 606
Query: 358 ESYERLNVDCGKLEHIEHGTVTLETTRTT-HGAVAIYACHENYTLIGETRRVCGDGGKWN 416
E + CG + +G V +T H V Y C+ + + G + C D G+W
Sbjct: 607 EQVQ----SCGPPPELLNGNVKEKTKEEYGHSEVVEYYCNPRFLMKGPNKIQCVD-GEWT 661
Query: 417 GTEPQCLFDW--CAEPPQISGGIVTTSG--RRTGSVATYSCEPGFILFGSNVNIDC--GR 470
T P C+ + C + P++ G S G ++C F + G +I C G
Sbjct: 662 -TLPVCIVEESTCGDIPELEHGWAQLSSPPYYYGDSVEFNCSESFTMIGHR-SITCIHGV 719
Query: 471 LTAIPYG-SISYLNETTYLGSEVLYSCSRNYRLVGHPRRSCLESKVWSDTAPKCEGKATK 529
T +P +I L + +L +N + H S+ +C GK
Sbjct: 720 WTQLPQCVAIDKLKKCKSSNLIILEEHLKNKKEFDHN----------SNIRYRCRGKEGW 769
Query: 530 DIKVCSNVAVDRREIRC---------PEPTLPAHSILSVTGNDRLYGRTLIKTADS---- 576
VC N D E+ C P P +P ++ T N R + + ++
Sbjct: 770 IHTVCINGRWD-PEVNCSMAQIQLCPPPPQIPNSHNMTTTLNYRDGEKVSVLCQENYLIQ 828
Query: 577 ASSVATYKIGALPTLP-AHSILSVTGNDRLYGRTLIKTADSASSVATYKIGALVKYRCER 635
T K G ++P + + ++ T+ S SS +Y G + Y CE
Sbjct: 829 EGEEITCKDGRWQSIPLCVEKIPCSQPPQIEHGTI---NSSRSSQESYAHGTKLSYTCEG 885
Query: 636 GYKVEGEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGFTLTSNATYYGTAVLYECDE 695
G+++ E +TC G WS S P+C + C +P + +G S++ YG V Y+C E
Sbjct: 886 GFRISEENETTCY-MGKWS-SPPQCEGLPCKSPPEISHGVVAHMSDSYQYGEEVTYKCFE 943
Query: 696 NYRLEGHARRLCLENGTWSSGLPTCKGNEGHARRLCLENGTWSSGLPTCKGCKTPKKSLT 755
+ ++G A CL G S P+C + CL ++ + +P + KK +
Sbjct: 944 GFGIDGPAIAKCL--GEKWSHPPSC------IKTDCLSLPSFENAIPMGE-----KKDVY 990
Query: 756 RPALSCLPGKRFYYHRGIFRLQNTQKVSYTRTCTKRGTWSGHIPTCKAIDCSHPGSIDNG 815
+ + Y +++ V TC W+G PTC+ C +P ++ N
Sbjct: 991 KAG-----EQVTYTCATYYKMDGASNV----TCI-NSRWTGR-PTCRDTSCVNPPTVQNA 1039
Query: 816 RVIIMNQTTTYNSA--VEYHCVPQYQRIGPYLRKCMEDGSWSGDEPRCE 862
I+ Q + Y S V Y C Y+ G C+ +G+W+ + P+C+
Sbjct: 1040 -YIVSRQMSKYPSGERVRYQCRSPYEMFGDEEVMCL-NGNWT-EPPQCK 1085
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 120/521 (23%), Positives = 187/521 (35%), Gaps = 128/521 (24%)
Query: 253 GGRGWL--------WN-DVGCKLDYLHWICQHNPANCGSPDRHVNTTFVGTVSTKLGSTI 303
G GW+ W+ +V C + + +C P P+ H TT T++ + G +
Sbjct: 765 GKEGWIHTVCINGRWDPEVNCSMAQIQ-LCPPPPQ---IPNSHNMTT---TLNYRDGEKV 817
Query: 304 SYACPEGNMLVGSATRTCKEGFWTGVAPTCQYFQLQPMDVPNLVLYLFLSKLFRESYERL 363
S C E ++ TCK+G W + P C
Sbjct: 818 SVLCQENYLIQEGEEITCKDGRWQSI-PLCV----------------------------E 848
Query: 364 NVDCGKLEHIEHGTVTLETTRT---THGAVAIYACHENYTLIGETRRVCGDGGKWNGTEP 420
+ C + IEHGT+ + HG Y C + + E C GKW+ + P
Sbjct: 849 KIPCSQPPQIEHGTINSSRSSQESYAHGTKLSYTCEGGFRISEENETTCY-MGKWS-SPP 906
Query: 421 QCLFDWCAEPPQISGGIVT--TSGRRTGSVATYSCEPGFILFG---------------SN 463
QC C PP+IS G+V + + G TY C GF + G S
Sbjct: 907 QCEGLPCKSPPEISHGVVAHMSDSYQYGEEVTYKCFEGFGIDGPAIAKCLGEKWSHPPSC 966
Query: 464 VNIDCGRL----TAIPYGSISYLNETTYLGSEVLYSCSRNYRLVGHPRRSCLESKVWSDT 519
+ DC L AIP G + G +V Y+C+ Y++ G +C+ S+ W+
Sbjct: 967 IKTDCLSLPSFENAIPMGE---KKDVYKAGEQVTYTCATYYKMDGASNVTCINSR-WTG- 1021
Query: 520 APKCEGKATKDIKVCSNVAVDRREI-------------RCPEPTLPAHSILSVTGNDRLY 566
P C + + N + R++ R P ++ + GN
Sbjct: 1022 RPTCRDTSCVNPPTVQNAYIVSRQMSKYPSGERVRYQCRSPYEMFGDEEVMCLNGN---- 1077
Query: 567 GRTLIKTADSASSVATYKIGALPTLPAHSILSVTGNDRLYGRTLIKTADSASSVATYKIG 626
T +T K G P + I S ++ Y
Sbjct: 1078 -----WTEPPQCKDSTGKCGPPPPIDNGDITSF-------------------PLSVYAPA 1113
Query: 627 ALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGFTL--TSNATY 684
+ V+Y+C+ Y++EG TC + G WS P+C++ + E + N L T+
Sbjct: 1114 SSVEYQCQNLYQLEGNKRITCRN-GQWS-EPPKCLHPCVISREIMENYNIALRWTAKQKL 1171
Query: 685 Y---GTAVLYECDENYRLEGHARRLCLENGTWSSGL--PTC 720
Y G +V + C YRL +R L W L PTC
Sbjct: 1172 YSRTGESVEFVCKRGYRLS--SRSHTLRTTCWDGKLEYPTC 1210
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 109/477 (22%), Positives = 169/477 (35%), Gaps = 92/477 (19%)
Query: 300 GSTISYACPEGNMLVGSATRTCKEGFWTGVAPTCQYFQLQPMDVPNLVLYLFLSKLFRES 359
G ++ + C E ++G + TC G WT + +L+ NL++ K +E
Sbjct: 694 GDSVEFNCSESFTMIGHRSITCIHGVWTQLPQCVAIDKLKKCKSSNLIILEEHLKNKKEF 753
Query: 360 YERLNVD--------------------------------CGKLEHIEHGTVTLETTRTTH 387
N+ C I + T
Sbjct: 754 DHNSNIRYRCRGKEGWIHTVCINGRWDPEVNCSMAQIQLCPPPPQIPNSHNMTTTLNYRD 813
Query: 388 GAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCLFDW-CAEPPQISGGIVTTSGRRTG 446
G C ENY LI E + G+W P C+ C++PPQI G + +S
Sbjct: 814 GEKVSVLCQENY-LIQEGEEITCKDGRWQSI-PLCVEKIPCSQPPQIEHGTINSSRSSQE 871
Query: 447 SVA-----TYSCEPGFILFGSNVN---------------IDCGRLTAIPYGSISYLNETT 486
S A +Y+CE GF + N + C I +G +++++++
Sbjct: 872 SYAHGTKLSYTCEGGFRISEENETTCYMGKWSSPPQCEGLPCKSPPEISHGVVAHMSDSY 931
Query: 487 YLGSEVLYSCSRNYRLVGHPRRSCLESKVWSDTAPKCEGKATKDIKVCSNVAVDRREIRC 546
G EV Y C + + G CL K WS P C + D +
Sbjct: 932 QYGEEVTYKCFEGFGIDGPAIAKCLGEK-WSH-PPSC-------------IKTDCLSLPS 976
Query: 547 PEPTLPAHSILSV--TGNDRLYGRTLIKTADSASSVA--TYKIGALPTLPAHSILS--VT 600
E +P V G Y D AS+V + PT S ++
Sbjct: 977 FENAIPMGEKKDVYKAGEQVTYTCATYYKMDGASNVTCINSRWTGRPTCRDTSCVNPPTV 1036
Query: 601 GNDRLYGRTLIKTADSASSVATYKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPEC 660
N + R + K Y G V+Y+C Y++ G+ C + G+W+ P+C
Sbjct: 1037 QNAYIVSRQMSK----------YPSGERVRYQCRSPYEMFGDEEVMCLN-GNWT-EPPQC 1084
Query: 661 IYV--DCGNPETVPNGGFTLTSNATYY-GTAVLYECDENYRLEGHARRLCLENGTWS 714
CG P + NG T + Y ++V Y+C Y+LEG+ R C NG WS
Sbjct: 1085 KDSTGKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITC-RNGQWS 1140
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 98/249 (39%), Gaps = 24/249 (9%)
Query: 619 SVATYKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVP--ECIYVDCGNPETVPNGGF 676
S TY G Y+C GY+ G + C G W P +C CG+P P G F
Sbjct: 20 SDQTYPEGTQAIYKCRPGYRSLGNVIMVCRK-GEWVALNPLRKCQKRPCGHPGDTPFGTF 78
Query: 677 TLTS-NATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTCKGNEGHARRLCLENG 735
TLT N YG +Y C+E Y+L G + W++ +P C+ + CL
Sbjct: 79 TLTGGNVFEYGVKAVYTCNEGYQLLGEINYRECDTDGWTNDIPICEVVK------CLPVT 132
Query: 736 TWSSGLPTCKGCKTPKKSLTRPALSCLPGKRFYYHRGIFRLQNTQKVSYTRTCTKRGTWS 795
+G + ++ A+ RF + G ++++ +++ C+ G WS
Sbjct: 133 APENGKIVSSAMEPDREYHFGQAV------RFVCNSG-YKIEGDEEMH----CSDDGFWS 181
Query: 796 GHIPTCKAIDCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCMEDGSWS 855
P C I C P I NG I N +Y C Y+ C E G W
Sbjct: 182 KEKPKCVEISCKSPDVI-NGSPISQKIIYKENERFQYKCNMGYEYSERGDAVCTESG-WR 239
Query: 856 GDEPRCEKR 864
P CE++
Sbjct: 240 -PLPSCEEK 247
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 122/519 (23%), Positives = 200/519 (38%), Gaps = 84/519 (16%)
Query: 393 YACHENY-TLIGET--RRVCGDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGR---RTG 446
Y CH+ Y + G T VCG G W+ P C C E P+I +V + + G
Sbjct: 516 YECHDGYESNTGSTTGSIVCGYNG-WSDL-PICYEREC-ELPKIDVHLVPDRKKDQYKVG 572
Query: 447 SVATYSCEPGFILFGSN--------VNID----------CGRLTAIPYGSISYLNETTYL 488
V +SC+PGF + G N ++ D CG + G++ + Y
Sbjct: 573 EVLKFSCKPGFTIVGPNSVQCYHFGLSPDLPICKEQVQSCGPPPELLNGNVKEKTKEEYG 632
Query: 489 GSEVL-YSCSRNYRLVGHPRRSCLESKVWSDTAPKCEGKATKDIKVCSNVAVDRREIRCP 547
SEV+ Y C+ + + G + C++ + W+ T P C + C ++
Sbjct: 633 HSEVVEYYCNPRFLMKGPNKIQCVDGE-WT-TLPVC----IVEESTCGDI---------- 676
Query: 548 EPTLPAHSILSVTGNDRLYGRTL-IKTADSASSVATYKI----GALPTLPAHSILSVTGN 602
P L H ++ YG ++ ++S + + I G LP +++
Sbjct: 677 -PEL-EHGWAQLSSPPYYYGDSVEFNCSESFTMIGHRSITCIHGVWTQLP--QCVAIDKL 732
Query: 603 DRLYGRTLIKTADSASSVATYKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECIY 662
+ LI + + + + ++YRC RG EG + C + G W V C
Sbjct: 733 KKCKSSNLIILEEHLKNKKEFDHNSNIRYRC-RG--KEGWIHTVCIN-GRWDPEV-NCSM 787
Query: 663 VD---CGNPETVPNGGFTLTSNATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPT 719
C P +PN T+ G V C ENY ++ + ++G W S +P
Sbjct: 788 AQIQLCPPPPQIPNSHNMTTTLNYRDGEKVSVLCQENYLIQ-EGEEITCKDGRWQS-IPL 845
Query: 720 CKGNEGHARRLCLENGTWSSGLPTCKGCKTPKKSLTRPALSCLPGKRFYYHRGIFRLQNT 779
C ++ +E+GT +S ++ ++S K Y G FR+
Sbjct: 846 CVEKIPCSQPPQIEHGTINSS-------RSSQESYAHGT------KLSYTCEGGFRISEE 892
Query: 780 QKVSYTRTCTKRGTWSGHIPTCKAIDCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQ 839
+ TC G WS P C+ + C P I +G V M+ + Y V Y C +
Sbjct: 893 NET----TCY-MGKWSSP-PQCEGLPCKSPPEISHGVVAHMSDSYQYGEEVTYKCFEGFG 946
Query: 840 RIGPYLRKCMEDGSWSGDEPRCEKRFNSGIPGRSRRSPI 878
GP + KC+ + WS P C K +P P+
Sbjct: 947 IDGPAIAKCLGE-KWS-HPPSCIKTDCLSLPSFENAIPM 983
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 85/389 (21%), Positives = 128/389 (32%), Gaps = 71/389 (18%)
Query: 387 HGAVAIYACHENYTLIGETRRVCGDGGKWNGTEP--QCLFDWCAEPPQISGGIVTTSGRR 444
G AIY C Y +G VC G +W P +C C P G T +G
Sbjct: 26 EGTQAIYKCRPGYRSLGNVIMVCRKG-EWVALNPLRKCQKRPCGHPGDTPFGTFTLTGGN 84
Query: 445 T---GSVATYSCEPGFILFGSNVN------------------IDCGRLTAIPYGSI---- 479
G A Y+C G+ L G +N + C +TA G I
Sbjct: 85 VFEYGVKAVYTCNEGYQLLGE-INYRECDTDGWTNDIPICEVVKCLPVTAPENGKIVSSA 143
Query: 480 SYLNETTYLGSEVLYSCSRNYRLVGHPRRSCLESKVWSDTAPKCEGKATKDIKVCSNVAV 539
+ + G V + C+ Y++ G C + WS PKC + K V + +
Sbjct: 144 MEPDREYHFGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKEKPKCVEISCKSPDVINGSPI 203
Query: 540 DRREIRCPEPTLPAHSILSVTGNDRLYGRTLIKTADSASSVATYKIGALPTLPAHSILSV 599
++ I N+R + + S A LP+ S
Sbjct: 204 SQKII--------------YKENERFQYKCNMGYEYSERGDAVCTESGWRPLPSCEEKSC 249
Query: 600 TGNDRLYGRTLIKTADSASSVATYKIGALVKYRCERG-YKVEGEPLSTCEDTGSWSGSVP 658
D Y I D + ++ G + Y+C G Y + C TG W P
Sbjct: 250 ---DNPY----IPNGDYSPLRIKHRTGDEITYQCRNGFYPATRGNTAKCTSTG-WI-PAP 300
Query: 659 ECIYVDCGNPETVPNGGFTLTSNATYYGTAV----LYECDENYRLEGHA---RRLCLENG 711
C C P+ G + Y+ AV Y CDE++ + C ++G
Sbjct: 301 RCTLKPCDYPDIKHGGLYHENMRRPYFPVAVGKYYSYYCDEHFETPSGSYWDHIHCTQDG 360
Query: 712 TWSSGLPTCKG----------NEGHARRL 730
WS +P + N+ H R+
Sbjct: 361 -WSPAVPCLRKCYFPYLENGYNQNHGRKF 388
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 148/664 (22%), Positives = 228/664 (34%), Gaps = 145/664 (21%)
Query: 273 CQHNPANCGSP-DRHVNT-TFVGTVSTKLGSTISYACPEGNMLVGSAT-RTCKEGFWTGV 329
CQ P CG P D T T G + G Y C EG L+G R C WT
Sbjct: 62 CQKRP--CGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQLLGEINYRECDTDGWTND 119
Query: 330 APTCQYFQLQPMDVPNLVLYLFLSKLFRESYERLNVDCGKLEHIEHGTVTLETTRTTHGA 389
P C+ + P+ P + GK+ + +E R H
Sbjct: 120 IPICEVVKCLPVTAP---------------------ENGKIV-----SSAMEPDREYHFG 153
Query: 390 VAI-YACHENYTLIGETRRVCGDGGKWNGTEPQCLFDWCAEPPQISGGIVTTS-GRRTGS 447
A+ + C+ Y + G+ C D G W+ +P+C+ C P I+G ++ +
Sbjct: 154 QAVRFVCNSGYKIEGDEEMHCSDDGFWSKEKPKCVEISCKSPDVINGSPISQKIIYKENE 213
Query: 448 VATYSCEPGFILF--GSNVNIDCG------------RLTAIPYGSISYLNETTYLGSEVL 493
Y C G+ G V + G IP G S L G E+
Sbjct: 214 RFQYKCNMGYEYSERGDAVCTESGWRPLPSCEEKSCDNPYIPNGDYSPLRIKHRTGDEIT 273
Query: 494 YSCSRNYRLVGHPRRSCLESKVWSDTAPKCEGKATK--DIKVCSNVAVDRREIRCPEPTL 551
Y C + + S W AP+C K DIK + + +R P
Sbjct: 274 YQCRNGFYPATRGNTAKCTSTGWI-PAPRCTLKPCDYPDIK---HGGLYHENMR--RPYF 327
Query: 552 PAHSILSVTGNDRLYGRTLIKTADSA--SSVATYKIGALPTLP----AHSILSVTGNDRL 605
P ++V Y +T + + + G P +P + G ++
Sbjct: 328 P----VAVGKYYSYYCDEHFETPSGSYWDHIHCTQDGWSPAVPCLRKCYFPYLENGYNQN 383
Query: 606 YGRTLIKTADSASSVATYKIGALVKYRCERGYKV-EGEPLSTCEDTGSWSGSVPECIYVD 664
+GR ++ G + C GY + + + TC + G WS P CI V
Sbjct: 384 HGRKFVQ-------------GKSIDVACHPGYALPKAQTTVTCMENG-WS-PTPRCIRVK 428
Query: 665 -CGNPETVPNGGFTLTSNATY-YGTAVLYECDENYRL---EGHARRLCLENGTWSSGLPT 719
C GF S TY Y+C Y E C ++G WS+ PT
Sbjct: 429 TCSKSSIDIENGFISESQYTYALKEKAKYQCKLGYVTADGETSGSIRCGKDG-WSA-QPT 486
Query: 720 C-----------------------------KGNEGHARR--------LCLENGTWSSGLP 742
C + ++G+ +C NG WS LP
Sbjct: 487 CIKSCDIPVFMNARTKNDFTWFKLNDTLDYECHDGYESNTGSTTGSIVCGYNG-WSD-LP 544
Query: 743 TC--KGCKTPKKSLTRPALSCLPGKRFYYHRGIFRLQNTQKVSYTRT------CTKRGTW 794
C + C+ PK + +P ++ ++ L+ + K +T C G
Sbjct: 545 ICYERECELPKID-----VHLVPDRKKDQYKVGEVLKFSCKPGFTIVGPNSVQCYHFGL- 598
Query: 795 SGHIPTCK--AIDCSHPGSIDNGRVI-IMNQTTTYNSAVEYHCVPQYQRIGPYLRKCMED 851
S +P CK C P + NG V + ++ VEY+C P++ GP +C+ D
Sbjct: 599 SPDLPICKEQVQSCGPPPELLNGNVKEKTKEEYGHSEVVEYYCNPRFLMKGPNKIQCV-D 657
Query: 852 GSWS 855
G W+
Sbjct: 658 GEWT 661
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 90/384 (23%), Positives = 145/384 (37%), Gaps = 63/384 (16%)
Query: 370 LEHIEHGTVTLETTRTTHGAVAIYACHENYTL-IGETRRVCGDGGKWNGTEPQCL-FDWC 427
++E+G + G ACH Y L +T C + G W+ T P+C+ C
Sbjct: 373 FPYLENGYNQNHGRKFVQGKSIDVACHPGYALPKAQTTVTCMENG-WSPT-PRCIRVKTC 430
Query: 428 AEPP-QISGGIVTTSGRRTG--SVATYSCEPGFILFGSNVN--IDCGR--LTAIP----- 475
++ I G ++ S A Y C+ G++ + I CG+ +A P
Sbjct: 431 SKSSIDIENGFISESQYTYALKEKAKYQCKLGYVTADGETSGSIRCGKDGWSAQPTCIKS 490
Query: 476 -----YGSISYLNETTY--LGSEVLYSCSRNYRLVGHPRRSCLESKVWSDTAP-KCEGKA 527
+ + N+ T+ L + Y C Y ES S T C
Sbjct: 491 CDIPVFMNARTKNDFTWFKLNDTLDYECHDGY-----------ESNTGSTTGSIVCGYNG 539
Query: 528 TKDIKVCSNVAVDRREIRCPEPTLPAHSILSVTGNDRLYGRTLIKTADSA------SSVA 581
D+ +C E C P + H + + G L + +SV
Sbjct: 540 WSDLPIC-------YERECELPKIDVHLVPDRKKDQYKVGEVLKFSCKPGFTIVGPNSVQ 592
Query: 582 TYKIGALPTLP--AHSILSV-TGNDRLYGRTLIKTADSASSVATYKIGALVKYRCERGYK 638
Y G P LP + S + L G KT + Y +V+Y C +
Sbjct: 593 CYHFGLSPDLPICKEQVQSCGPPPELLNGNVKEKTKEE------YGHSEVVEYYCNPRFL 646
Query: 639 VEGEPLSTCEDTGSWSGSVPECIYVD--CGNPETVPNGGFTLTSNATYYGTAVLYECDEN 696
++G C D G W+ ++P CI + CG+ + +G L+S YYG +V + C E+
Sbjct: 647 MKGPNKIQCVD-GEWT-TLPVCIVEESTCGDIPELEHGWAQLSSPPYYYGDSVEFNCSES 704
Query: 697 YRLEGHARRLCLENGTWSSGLPTC 720
+ + GH C+ +G W+ LP C
Sbjct: 705 FTMIGHRSITCI-HGVWTQ-LPQC 726
>pdb|3GAU|A Chain A, Solution Structure Of Human Complement Factor H In 50 Mm
Nacl Buffer
pdb|3GAV|A Chain A, Solution Structure Of Human Complement Factor H In 137 Mm
Nacl Buffer
pdb|3GAW|A Chain A, Solution Structure Of Human Complement Factor H In 250 Mm
Nacl Buffer
Length = 1213
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 136/589 (23%), Positives = 232/589 (39%), Gaps = 97/589 (16%)
Query: 298 KLGSTISYACPEGNMLVGSATRTCKEGFWTGVAPTCQYFQLQPMDVPNLVLYLFLSKLFR 357
K+G + ++C G +VG + C +F L P D+P + +
Sbjct: 570 KVGEVLKFSCKPGFTIVGPNSV------------QCYHFGLSP-DLP----------ICK 606
Query: 358 ESYERLNVDCGKLEHIEHGTVTLETTRTT-HGAVAIYACHENYTLIGETRRVCGDGGKWN 416
E + CG + +G V +T H V Y C+ + + G + C D G+W
Sbjct: 607 EQVQ----SCGPPPELLNGNVKEKTKEEYGHSEVVEYYCNPRFLMKGPNKIQCVD-GEWT 661
Query: 417 GTEPQCLFDW--CAEPPQISGGIVTTSG--RRTGSVATYSCEPGFILFGSNVNIDC--GR 470
T P C+ + C + P++ G S G ++C F + G +I C G
Sbjct: 662 -TLPVCIVEESTCGDIPELEHGWAQLSSPPYYYGDSVEFNCSESFTMIGHR-SITCIHGV 719
Query: 471 LTAIPYG-SISYLNETTYLGSEVLYSCSRNYRLVGHPRRSCLESKVWSDTAPKCEGKATK 529
T +P +I L + +L +N + H S+ +C GK
Sbjct: 720 WTQLPQCVAIDKLKKCKSSNLIILEEHLKNKKEFDHN----------SNIRYRCRGKEGW 769
Query: 530 DIKVCSNVAVDRREIRC---------PEPTLPAHSILSVTGNDRLYGRTLIKTADS---- 576
VC N D E+ C P P +P ++ T N R + + ++
Sbjct: 770 IHTVCINGRWD-PEVNCSMAQIQLCPPPPQIPNSHNMTTTLNYRDGEKVSVLCQENYLIQ 828
Query: 577 ASSVATYKIGALPTLP-AHSILSVTGNDRLYGRTLIKTADSASSVATYKIGALVKYRCER 635
T K G ++P + + ++ T+ S SS +Y G + Y CE
Sbjct: 829 EGEEITCKDGRWQSIPLCVEKIPCSQPPQIEHGTI---NSSRSSQESYAHGTKLSYTCEG 885
Query: 636 GYKVEGEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGFTLTSNATYYGTAVLYECDE 695
G+++ E +TC G WS S P+C + C +P + +G S++ YG V Y+C E
Sbjct: 886 GFRISEENETTCY-MGKWS-SPPQCEGLPCKSPPEISHGVVAHMSDSYQYGEEVTYKCFE 943
Query: 696 NYRLEGHARRLCLENGTWSSGLPTCKGNEGHARRLCLENGTWSSGLPTCKGCKTPKKSLT 755
+ ++G A CL G S P+C + CL ++ + +P + KK +
Sbjct: 944 GFGIDGPAIAKCL--GEKWSHPPSC------IKTDCLSLPSFENAIPMGE-----KKDVY 990
Query: 756 RPALSCLPGKRFYYHRGIFRLQNTQKVSYTRTCTKRGTWSGHIPTCKAIDCSHPGSIDNG 815
+ + Y +++ V TC W+G PTC+ C +P ++ N
Sbjct: 991 KAG-----EQVTYTCATYYKMDGASNV----TCIN-SRWTGR-PTCRDTSCVNPPTVQNA 1039
Query: 816 RVIIMNQTTTYNSA--VEYHCVPQYQRIGPYLRKCMEDGSWSGDEPRCE 862
I+ Q + Y S V Y C Y+ G C+ +G+W+ + P+C+
Sbjct: 1040 -YIVSRQMSKYPSGERVRYQCRSPYEMFGDEEVMCL-NGNWT-EPPQCK 1085
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 120/521 (23%), Positives = 187/521 (35%), Gaps = 128/521 (24%)
Query: 253 GGRGWL--------WN-DVGCKLDYLHWICQHNPANCGSPDRHVNTTFVGTVSTKLGSTI 303
G GW+ W+ +V C + + +C P P+ H TT T++ + G +
Sbjct: 765 GKEGWIHTVCINGRWDPEVNCSMAQIQ-LCPPPPQ---IPNSHNMTT---TLNYRDGEKV 817
Query: 304 SYACPEGNMLVGSATRTCKEGFWTGVAPTCQYFQLQPMDVPNLVLYLFLSKLFRESYERL 363
S C E ++ TCK+G W + P C
Sbjct: 818 SVLCQENYLIQEGEEITCKDGRWQSI-PLCV----------------------------E 848
Query: 364 NVDCGKLEHIEHGTVTLETTRT---THGAVAIYACHENYTLIGETRRVCGDGGKWNGTEP 420
+ C + IEHGT+ + HG Y C + + E C GKW+ + P
Sbjct: 849 KIPCSQPPQIEHGTINSSRSSQESYAHGTKLSYTCEGGFRISEENETTCY-MGKWS-SPP 906
Query: 421 QCLFDWCAEPPQISGGIVT--TSGRRTGSVATYSCEPGFILFG---------------SN 463
QC C PP+IS G+V + + G TY C GF + G S
Sbjct: 907 QCEGLPCKSPPEISHGVVAHMSDSYQYGEEVTYKCFEGFGIDGPAIAKCLGEKWSHPPSC 966
Query: 464 VNIDCGRL----TAIPYGSISYLNETTYLGSEVLYSCSRNYRLVGHPRRSCLESKVWSDT 519
+ DC L AIP G + G +V Y+C+ Y++ G +C+ S+ W+
Sbjct: 967 IKTDCLSLPSFENAIPMGE---KKDVYKAGEQVTYTCATYYKMDGASNVTCINSR-WTG- 1021
Query: 520 APKCEGKATKDIKVCSNVAVDRREI-------------RCPEPTLPAHSILSVTGNDRLY 566
P C + + N + R++ R P ++ + GN
Sbjct: 1022 RPTCRDTSCVNPPTVQNAYIVSRQMSKYPSGERVRYQCRSPYEMFGDEEVMCLNGN---- 1077
Query: 567 GRTLIKTADSASSVATYKIGALPTLPAHSILSVTGNDRLYGRTLIKTADSASSVATYKIG 626
T +T K G P + I S ++ Y
Sbjct: 1078 -----WTEPPQCKDSTGKCGPPPPIDNGDITSF-------------------PLSVYAPA 1113
Query: 627 ALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGFTL--TSNATY 684
+ V+Y+C+ Y++EG TC + G WS P+C++ + E + N L T+
Sbjct: 1114 SSVEYQCQNLYQLEGNKRITCRN-GQWS-EPPKCLHPCVISREIMENYNIALRWTAKQKL 1171
Query: 685 Y---GTAVLYECDENYRLEGHARRLCLENGTWSSGL--PTC 720
Y G +V + C YRL +R L W L PTC
Sbjct: 1172 YSRTGESVEFVCKRGYRLS--SRSHTLRTTCWDGKLEYPTC 1210
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 109/477 (22%), Positives = 169/477 (35%), Gaps = 92/477 (19%)
Query: 300 GSTISYACPEGNMLVGSATRTCKEGFWTGVAPTCQYFQLQPMDVPNLVLYLFLSKLFRES 359
G ++ + C E ++G + TC G WT + +L+ NL++ K +E
Sbjct: 694 GDSVEFNCSESFTMIGHRSITCIHGVWTQLPQCVAIDKLKKCKSSNLIILEEHLKNKKEF 753
Query: 360 YERLNVD--------------------------------CGKLEHIEHGTVTLETTRTTH 387
N+ C I + T
Sbjct: 754 DHNSNIRYRCRGKEGWIHTVCINGRWDPEVNCSMAQIQLCPPPPQIPNSHNMTTTLNYRD 813
Query: 388 GAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCLFDW-CAEPPQISGGIVTTSGRRTG 446
G C ENY LI E + G+W P C+ C++PPQI G + +S
Sbjct: 814 GEKVSVLCQENY-LIQEGEEITCKDGRWQSI-PLCVEKIPCSQPPQIEHGTINSSRSSQE 871
Query: 447 SVA-----TYSCEPGFILFGSNVN---------------IDCGRLTAIPYGSISYLNETT 486
S A +Y+CE GF + N + C I +G +++++++
Sbjct: 872 SYAHGTKLSYTCEGGFRISEENETTCYMGKWSSPPQCEGLPCKSPPEISHGVVAHMSDSY 931
Query: 487 YLGSEVLYSCSRNYRLVGHPRRSCLESKVWSDTAPKCEGKATKDIKVCSNVAVDRREIRC 546
G EV Y C + + G CL K WS P C + D +
Sbjct: 932 QYGEEVTYKCFEGFGIDGPAIAKCLGEK-WSH-PPSC-------------IKTDCLSLPS 976
Query: 547 PEPTLPAHSILSV--TGNDRLYGRTLIKTADSASSVA--TYKIGALPTLPAHSILS--VT 600
E +P V G Y D AS+V + PT S ++
Sbjct: 977 FENAIPMGEKKDVYKAGEQVTYTCATYYKMDGASNVTCINSRWTGRPTCRDTSCVNPPTV 1036
Query: 601 GNDRLYGRTLIKTADSASSVATYKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPEC 660
N + R + K Y G V+Y+C Y++ G+ C + G+W+ P+C
Sbjct: 1037 QNAYIVSRQMSK----------YPSGERVRYQCRSPYEMFGDEEVMCLN-GNWT-EPPQC 1084
Query: 661 IYV--DCGNPETVPNGGFTLTSNATYY-GTAVLYECDENYRLEGHARRLCLENGTWS 714
CG P + NG T + Y ++V Y+C Y+LEG+ R C NG WS
Sbjct: 1085 KDSTGKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITC-RNGQWS 1140
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 98/249 (39%), Gaps = 24/249 (9%)
Query: 619 SVATYKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVP--ECIYVDCGNPETVPNGGF 676
S TY G Y+C GY+ G + C G W P +C CG+P P G F
Sbjct: 20 SDQTYPEGTQAIYKCRPGYRSLGNVIMVCRK-GEWVALNPLRKCQKRPCGHPGDTPFGTF 78
Query: 677 TLTS-NATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTCKGNEGHARRLCLENG 735
TLT N YG +Y C+E Y+L G + W++ +P C+ + CL
Sbjct: 79 TLTGGNVFEYGVKAVYTCNEGYQLLGEINYRECDTDGWTNDIPICEVVK------CLPVT 132
Query: 736 TWSSGLPTCKGCKTPKKSLTRPALSCLPGKRFYYHRGIFRLQNTQKVSYTRTCTKRGTWS 795
+G + ++ A+ RF + G ++++ +++ C+ G WS
Sbjct: 133 APENGKIVSSAMEPDREYHFGQAV------RFVCNSG-YKIEGDEEMH----CSDDGFWS 181
Query: 796 GHIPTCKAIDCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCMEDGSWS 855
P C I C P I NG I N +Y C Y+ C E G W
Sbjct: 182 KEKPKCVEISCKSPDVI-NGSPISQKIIYKENERFQYKCNMGYEYSERGDAVCTESG-WR 239
Query: 856 GDEPRCEKR 864
P CE++
Sbjct: 240 -PLPSCEEK 247
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 122/519 (23%), Positives = 200/519 (38%), Gaps = 84/519 (16%)
Query: 393 YACHENY-TLIGET--RRVCGDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGR---RTG 446
Y CH+ Y + G T VCG G W+ P C C E P+I +V + + G
Sbjct: 516 YECHDGYESNTGSTTGSIVCGYNG-WSDL-PICYEREC-ELPKIDVHLVPDRKKDQYKVG 572
Query: 447 SVATYSCEPGFILFGSN--------VNID----------CGRLTAIPYGSISYLNETTYL 488
V +SC+PGF + G N ++ D CG + G++ + Y
Sbjct: 573 EVLKFSCKPGFTIVGPNSVQCYHFGLSPDLPICKEQVQSCGPPPELLNGNVKEKTKEEYG 632
Query: 489 GSEVL-YSCSRNYRLVGHPRRSCLESKVWSDTAPKCEGKATKDIKVCSNVAVDRREIRCP 547
SEV+ Y C+ + + G + C++ + W+ T P C + C ++
Sbjct: 633 HSEVVEYYCNPRFLMKGPNKIQCVDGE-WT-TLPVC----IVEESTCGDI---------- 676
Query: 548 EPTLPAHSILSVTGNDRLYGRTL-IKTADSASSVATYKI----GALPTLPAHSILSVTGN 602
P L H ++ YG ++ ++S + + I G LP +++
Sbjct: 677 -PEL-EHGWAQLSSPPYYYGDSVEFNCSESFTMIGHRSITCIHGVWTQLP--QCVAIDKL 732
Query: 603 DRLYGRTLIKTADSASSVATYKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECIY 662
+ LI + + + + ++YRC RG EG + C + G W V C
Sbjct: 733 KKCKSSNLIILEEHLKNKKEFDHNSNIRYRC-RG--KEGWIHTVCIN-GRWDPEV-NCSM 787
Query: 663 VD---CGNPETVPNGGFTLTSNATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPT 719
C P +PN T+ G V C ENY ++ + ++G W S +P
Sbjct: 788 AQIQLCPPPPQIPNSHNMTTTLNYRDGEKVSVLCQENYLIQ-EGEEITCKDGRWQS-IPL 845
Query: 720 CKGNEGHARRLCLENGTWSSGLPTCKGCKTPKKSLTRPALSCLPGKRFYYHRGIFRLQNT 779
C ++ +E+GT +S ++ ++S K Y G FR+
Sbjct: 846 CVEKIPCSQPPQIEHGTINSS-------RSSQESYAHGT------KLSYTCEGGFRISEE 892
Query: 780 QKVSYTRTCTKRGTWSGHIPTCKAIDCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQ 839
+ TC G WS P C+ + C P I +G V M+ + Y V Y C +
Sbjct: 893 NET----TCY-MGKWSSP-PQCEGLPCKSPPEISHGVVAHMSDSYQYGEEVTYKCFEGFG 946
Query: 840 RIGPYLRKCMEDGSWSGDEPRCEKRFNSGIPGRSRRSPI 878
GP + KC+ + WS P C K +P P+
Sbjct: 947 IDGPAIAKCLGE-KWS-HPPSCIKTDCLSLPSFENAIPM 983
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 85/389 (21%), Positives = 128/389 (32%), Gaps = 71/389 (18%)
Query: 387 HGAVAIYACHENYTLIGETRRVCGDGGKWNGTEP--QCLFDWCAEPPQISGGIVTTSGRR 444
G AIY C Y +G VC G +W P +C C P G T +G
Sbjct: 26 EGTQAIYKCRPGYRSLGNVIMVCRKG-EWVALNPLRKCQKRPCGHPGDTPFGTFTLTGGN 84
Query: 445 T---GSVATYSCEPGFILFGSNVN------------------IDCGRLTAIPYGSI---- 479
G A Y+C G+ L G +N + C +TA G I
Sbjct: 85 VFEYGVKAVYTCNEGYQLLGE-INYRECDTDGWTNDIPICEVVKCLPVTAPENGKIVSSA 143
Query: 480 SYLNETTYLGSEVLYSCSRNYRLVGHPRRSCLESKVWSDTAPKCEGKATKDIKVCSNVAV 539
+ + G V + C+ Y++ G C + WS PKC + K V + +
Sbjct: 144 MEPDREYHFGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKEKPKCVEISCKSPDVINGSPI 203
Query: 540 DRREIRCPEPTLPAHSILSVTGNDRLYGRTLIKTADSASSVATYKIGALPTLPAHSILSV 599
++ I N+R + + S A LP+ S
Sbjct: 204 SQKII--------------YKENERFQYKCNMGYEYSERGDAVCTESGWRPLPSCEEKSC 249
Query: 600 TGNDRLYGRTLIKTADSASSVATYKIGALVKYRCERG-YKVEGEPLSTCEDTGSWSGSVP 658
D Y I D + ++ G + Y+C G Y + C TG W P
Sbjct: 250 ---DNPY----IPNGDYSPLRIKHRTGDEITYQCRNGFYPATRGNTAKCTSTG-WI-PAP 300
Query: 659 ECIYVDCGNPETVPNGGFTLTSNATYYGTAV----LYECDENYRLEGHA---RRLCLENG 711
C C P+ G + Y+ AV Y CDE++ + C ++G
Sbjct: 301 RCTLKPCDYPDIKHGGLYHENMRRPYFPVAVGKYYSYYCDEHFETPSGSYWDHIHCTQDG 360
Query: 712 TWSSGLPTCKG----------NEGHARRL 730
WS +P + N+ H R+
Sbjct: 361 -WSPAVPCLRKCYFPYLENGYNQNHGRKF 388
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 148/664 (22%), Positives = 228/664 (34%), Gaps = 145/664 (21%)
Query: 273 CQHNPANCGSP-DRHVNT-TFVGTVSTKLGSTISYACPEGNMLVGSAT-RTCKEGFWTGV 329
CQ P CG P D T T G + G Y C EG L+G R C WT
Sbjct: 62 CQKRP--CGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQLLGEINYRECDTDGWTND 119
Query: 330 APTCQYFQLQPMDVPNLVLYLFLSKLFRESYERLNVDCGKLEHIEHGTVTLETTRTTHGA 389
P C+ + P+ P + GK+ + +E R H
Sbjct: 120 IPICEVVKCLPVTAP---------------------ENGKIV-----SSAMEPDREYHFG 153
Query: 390 VAI-YACHENYTLIGETRRVCGDGGKWNGTEPQCLFDWCAEPPQISGGIVTTS-GRRTGS 447
A+ + C+ Y + G+ C D G W+ +P+C+ C P I+G ++ +
Sbjct: 154 QAVRFVCNSGYKIEGDEEMHCSDDGFWSKEKPKCVEISCKSPDVINGSPISQKIIYKENE 213
Query: 448 VATYSCEPGFILF--GSNVNIDCG------------RLTAIPYGSISYLNETTYLGSEVL 493
Y C G+ G V + G IP G S L G E+
Sbjct: 214 RFQYKCNMGYEYSERGDAVCTESGWRPLPSCEEKSCDNPYIPNGDYSPLRIKHRTGDEIT 273
Query: 494 YSCSRNYRLVGHPRRSCLESKVWSDTAPKCEGKATK--DIKVCSNVAVDRREIRCPEPTL 551
Y C + + S W AP+C K DIK + + +R P
Sbjct: 274 YQCRNGFYPATRGNTAKCTSTGWI-PAPRCTLKPCDYPDIK---HGGLYHENMR--RPYF 327
Query: 552 PAHSILSVTGNDRLYGRTLIKTADSA--SSVATYKIGALPTLP----AHSILSVTGNDRL 605
P ++V Y +T + + + G P +P + G ++
Sbjct: 328 P----VAVGKYYSYYCDEHFETPSGSYWDHIHCTQDGWSPAVPCLRKCYFPYLENGYNQN 383
Query: 606 YGRTLIKTADSASSVATYKIGALVKYRCERGYKV-EGEPLSTCEDTGSWSGSVPECIYVD 664
+GR ++ G + C GY + + + TC + G WS P CI V
Sbjct: 384 HGRKFVQ-------------GKSIDVACHPGYALPKAQTTVTCMENG-WS-PTPRCIRVK 428
Query: 665 -CGNPETVPNGGFTLTSNATY-YGTAVLYECDENYRL---EGHARRLCLENGTWSSGLPT 719
C GF S TY Y+C Y E C ++G WS+ PT
Sbjct: 429 TCSKSSIDIENGFISESQYTYALKEKAKYQCKLGYVTADGETSGSITCGKDG-WSA-QPT 486
Query: 720 C-----------------------------KGNEGHARR--------LCLENGTWSSGLP 742
C + ++G+ +C NG WS LP
Sbjct: 487 CIKSCDIPVFMNARTKNDFTWFKLNDTLDYECHDGYESNTGSTTGSIVCGYNG-WSD-LP 544
Query: 743 TC--KGCKTPKKSLTRPALSCLPGKRFYYHRGIFRLQNTQKVSYTRT------CTKRGTW 794
C + C+ PK + +P ++ ++ L+ + K +T C G
Sbjct: 545 ICYERECELPKID-----VHLVPDRKKDQYKVGEVLKFSCKPGFTIVGPNSVQCYHFGL- 598
Query: 795 SGHIPTCK--AIDCSHPGSIDNGRVI-IMNQTTTYNSAVEYHCVPQYQRIGPYLRKCMED 851
S +P CK C P + NG V + ++ VEY+C P++ GP +C+ D
Sbjct: 599 SPDLPICKEQVQSCGPPPELLNGNVKEKTKEEYGHSEVVEYYCNPRFLMKGPNKIQCV-D 657
Query: 852 GSWS 855
G W+
Sbjct: 658 GEWT 661
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 90/384 (23%), Positives = 145/384 (37%), Gaps = 63/384 (16%)
Query: 370 LEHIEHGTVTLETTRTTHGAVAIYACHENYTL-IGETRRVCGDGGKWNGTEPQCL-FDWC 427
++E+G + G ACH Y L +T C + G W+ T P+C+ C
Sbjct: 373 FPYLENGYNQNHGRKFVQGKSIDVACHPGYALPKAQTTVTCMENG-WSPT-PRCIRVKTC 430
Query: 428 AEPP-QISGGIVTTSGRRTG--SVATYSCEPGFILFGSNVN--IDCGR--LTAIP----- 475
++ I G ++ S A Y C+ G++ + I CG+ +A P
Sbjct: 431 SKSSIDIENGFISESQYTYALKEKAKYQCKLGYVTADGETSGSITCGKDGWSAQPTCIKS 490
Query: 476 -----YGSISYLNETTY--LGSEVLYSCSRNYRLVGHPRRSCLESKVWSDTAP-KCEGKA 527
+ + N+ T+ L + Y C Y ES S T C
Sbjct: 491 CDIPVFMNARTKNDFTWFKLNDTLDYECHDGY-----------ESNTGSTTGSIVCGYNG 539
Query: 528 TKDIKVCSNVAVDRREIRCPEPTLPAHSILSVTGNDRLYGRTLIKTADSA------SSVA 581
D+ +C E C P + H + + G L + +SV
Sbjct: 540 WSDLPIC-------YERECELPKIDVHLVPDRKKDQYKVGEVLKFSCKPGFTIVGPNSVQ 592
Query: 582 TYKIGALPTLP--AHSILSV-TGNDRLYGRTLIKTADSASSVATYKIGALVKYRCERGYK 638
Y G P LP + S + L G KT + Y +V+Y C +
Sbjct: 593 CYHFGLSPDLPICKEQVQSCGPPPELLNGNVKEKTKEE------YGHSEVVEYYCNPRFL 646
Query: 639 VEGEPLSTCEDTGSWSGSVPECIYVD--CGNPETVPNGGFTLTSNATYYGTAVLYECDEN 696
++G C D G W+ ++P CI + CG+ + +G L+S YYG +V + C E+
Sbjct: 647 MKGPNKIQCVD-GEWT-TLPVCIVEESTCGDIPELEHGWAQLSSPPYYYGDSVEFNCSES 704
Query: 697 YRLEGHARRLCLENGTWSSGLPTC 720
+ + GH C+ +G W+ LP C
Sbjct: 705 FTMIGHRSITCI-HGVWTQ-LPQC 726
>pdb|3CQO|A Chain A, Crystal Structure Of A F-Lectin (Fucolectin) From Morone
Saxatilis (Striped Bass) Serum
pdb|3CQO|B Chain B, Crystal Structure Of A F-Lectin (Fucolectin) From Morone
Saxatilis (Striped Bass) Serum
pdb|3CQO|C Chain C, Crystal Structure Of A F-Lectin (Fucolectin) From Morone
Saxatilis (Striped Bass) Serum
Length = 293
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 78/170 (45%), Gaps = 34/170 (20%)
Query: 21 NVALRRPTNQSST---IRGAPSSNANDGELTTVHDGKRCTETQKEVSPWWQVDLLRPYPI 77
NVALR QS+ GA + NA DG + + CT T ++ +PWW+VDLL PY +
Sbjct: 5 NVALRGKATQSARYLHTHGA-AYNAIDGNRNSDFEAGSCTHTVEQTNPWWRVDLLEPYIV 63
Query: 78 RIVRITTRGCCGHQPLQDLEIRVGNSTDLQKNPLCAWFPGTLGHQPLQDLEIRVGNSTDL 137
+ IT RG C + L +EI +GNS LQ+N + G + H P
Sbjct: 64 TSITITNRGDCCPERLNGVEIHIGNS--LQENGVANPRVGVISHIP-------------- 107
Query: 138 QKNPLCAWFPGTLEEGITKSFTCARTLVGQNVFIQLVGVEGSLSLCEVEI 187
GI+ + + + G+ V + L G L+LCEVE+
Sbjct: 108 --------------AGISHTISFTERVEGRYVTVLLPGTNKVLTLCEVEV 143
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 74/171 (43%), Gaps = 32/171 (18%)
Query: 18 SGTNVALRRPTNQSSTIRGAPSSNANDGELTTVHDGKRCTETQKEVSPWWQVDLLRPYPI 77
+G N+AL+ QSS + NA DG + CT T+ + PWW++DL + + +
Sbjct: 150 TGENLALKGKATQSSLFESGIAYNAIDGNQANNWEMASCTHTKNTMDPWWRMDLSQTHRV 209
Query: 78 RIVRITTRGCCGHQPLQDLEIRVGNSTDLQKNPLCAWFPGTLGHQPLQDLEIRVGNSTDL 137
V++T R + + EIR+G+S D N
Sbjct: 210 FSVKVTNRDSF-EKRINGAEIRIGDSLDNNGN---------------------------- 240
Query: 138 QKNPLCAWFPGTLEEGITKSFTCARTLVGQNVFIQLVGVEGSLSLCEVEIF 188
NP CA ++ G + F C + G+ V I + G E L+LCEVE++
Sbjct: 241 -HNPRCAVIT-SIPAGASTEFQC-NGMDGRYVNIVIPGREEYLTLCEVEVY 288
>pdb|1K12|A Chain A, Fucose Binding Lectin
Length = 158
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 80/172 (46%), Gaps = 36/172 (20%)
Query: 21 NVALRRPTNQSSTIRG-----APSSNANDGELTTVHDGKRCTETQKEVSPWWQVDLLRPY 75
NVA+R QS+ +RG + +SNA DG + CT + + +PWW+VDLL+ Y
Sbjct: 10 NVAVRGKATQSAQLRGEHAANSEASNAIDGNRDSNFYHGSCTHSSGQANPWWRVDLLQVY 69
Query: 76 PIRIVRITTRGCCGHQPLQDLEIRVGNSTDLQKNPLCAWFPGTLGHQPLQDLEIRVGNST 135
I V IT RG C + + EI +G Q L ++
Sbjct: 70 TITSVTITNRGDCCGERISGAEINIG-----------------------QHL------AS 100
Query: 136 DLQKNPLCAWFPGTLEEGITKSFTCARTLVGQNVFIQLVGVEGSLSLCEVEI 187
+ NP C+ G++ G TK+F C ++G+ V L E SL LCEVE+
Sbjct: 101 NGVNNPECSVI-GSMATGETKTFHCPAPMIGRYVVTYLPTSE-SLHLCEVEV 150
>pdb|1NTJ|A Chain A, Model Of Rat Crry Determined By Solution Scattering, Curve
Fitting And Homology Modelling
Length = 320
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 106/267 (39%), Gaps = 38/267 (14%)
Query: 475 PYGSISYLNETTYLGSEVLYSCSRNYRLVGHPRRSCL---ESKVWSDTAPKCEGKATKDI 531
P I ++N GS + Y+C+ YRL+G C+ +S W AP CE
Sbjct: 72 PQNGIVHVNTDIRFGSSITYTCNEGYRLIGSSSAMCIISDQSVAWDAEAPICESIPC--- 128
Query: 532 KVCSNVAVDRREIRCPEPTLPAHSILSVTGNDRLYGRTLIKTADS-ASSVATYKIGALPT 590
EI P++P S D YG + ++ A + + P+
Sbjct: 129 -----------EI---PPSIPNGDFFSPNREDFHYGMVVTYQCNTDARGKKLFNLVGEPS 174
Query: 591 LPAHSILSVTGN-----------DRLYGRTLIKTADSASSVATYKIGALVKYRCERGYKV 639
+ SI G ++ + + + + + + +V++RC+ G+ +
Sbjct: 175 IHCTSIDGQVGVWSGPPPQCIELNKCTPPHVENAVIVSKNKSLFSLRDMVEFRCQDGFMM 234
Query: 640 EGEPLSTCEDTGSWSGSVPECIYV-DCGN-PETVPNGGFTLTSNATYYGTAVLYECDENY 697
+G+ C W +P C V CG +PNG + N G V + C+ Y
Sbjct: 235 KGDSSVYCRSLNRWEPQLPSCFKVKSCGAFLGELPNGHVFVPQNLQ-LGAKVTFVCNTGY 293
Query: 698 RLEGHARRLCLENGT---WSSGLPTCK 721
+L+G++ C+ +G W+S +P C+
Sbjct: 294 QLKGNSSSHCVLDGVESIWNSSVPVCE 320
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 98/255 (38%), Gaps = 32/255 (12%)
Query: 621 ATYKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGFTLTS 680
+T+ +G +KY C GY ++ + TCE W+ CI C P P G +
Sbjct: 23 STFPVGTSLKYECRPGY-IKRQFSITCEVNSVWTSPQDVCIRKQCETPLD-PQNGIVHVN 80
Query: 681 NATYYGTAVLYECDENYRLEGHARRLCL---ENGTWSSGLPTCKGNEGHARRLCLENGTW 737
+G+++ Y C+E YRL G + +C+ ++ W + P C+ + NG +
Sbjct: 81 TDIRFGSSITYTCNEGYRLIGSSSAMCIISDQSVAWDAEAPICESIPCEIPP-SIPNGDF 139
Query: 738 SS--------GLPTCKGCKTPKKSLTRPALSCLPGKRFYYHRGIFRLQNTQKVSYTRTCT 789
S G+ C T + GK+ +F L + T
Sbjct: 140 FSPNREDFHYGMVVTYQCNTDAR-----------GKK------LFNLVGEPSIHCTSIDG 182
Query: 790 KRGTWSGHIPTCKAIDCSHPGSIDNGRVIIMNQTT-TYNSAVEYHCVPQYQRIGPYLRKC 848
+ G WSG P C ++ P ++N ++ N++ + VE+ C + G C
Sbjct: 183 QVGVWSGPPPQCIELNKCTPPHVENAVIVSKNKSLFSLRDMVEFRCQDGFMMKGDSSVYC 242
Query: 849 MEDGSWSGDEPRCEK 863
W P C K
Sbjct: 243 RSLNRWEPQLPSCFK 257
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 108/279 (38%), Gaps = 76/279 (27%)
Query: 286 HVNTTFVGTVSTKLGSTISYACPEGNMLVGSATRTC----KEGFWTGVAPTCQYFQLQ-P 340
HVNT + GS+I+Y C EG L+GS++ C + W AP C+ + P
Sbjct: 78 HVNT------DIRFGSSITYTCNEGYRLIGSSSAMCIISDQSVAWDAEAPICESIPCEIP 131
Query: 341 MDVPNLVLYLFLSKLFRESYERLNVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHEN-- 398
+PN F + E + +G V Y C+ +
Sbjct: 132 PSIPN-------GDFFSPNREDFH----------------------YGMVVTYQCNTDAR 162
Query: 399 ----YTLIGETRRVC----GDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRRTGS--- 447
+ L+GE C G G W+G PQC+ PP + ++ + + S
Sbjct: 163 GKKLFNLVGEPSIHCTSIDGQVGVWSGPPPQCIELNKCTPPHVENAVIVSKNKSLFSLRD 222
Query: 448 VATYSCEPGFILFGSNVNI------------------DCGR-LTAIPYGSISYLNETTYL 488
+ + C+ GF++ G + CG L +P G + ++ + L
Sbjct: 223 MVEFRCQDGFMMKGDSSVYCRSLNRWEPQLPSCFKVKSCGAFLGELPNGHV-FVPQNLQL 281
Query: 489 GSEVLYSCSRNYRLVGHPRRSCL---ESKVWSDTAPKCE 524
G++V + C+ Y+L G+ C+ +W+ + P CE
Sbjct: 282 GAKVTFVCNTGYQLKGNSSSHCVLDGVESIWNSSVPVCE 320
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 74/319 (23%), Positives = 108/319 (33%), Gaps = 83/319 (26%)
Query: 393 YACHENYTLIGETRRVCGDGGKWNGTEPQCLFDWCAEPPQISGGIV-TTSGRRTGSVATY 451
Y C Y + + C W + C+ C P GIV + R GS TY
Sbjct: 33 YECRPGY-IKRQFSITCEVNSVWTSPQDVCIRKQCETPLDPQNGIVHVNTDIRFGSSITY 91
Query: 452 SCEPGFILFGSNV--------------------NIDCGRLTAIPYGSISYLN-ETTYLGS 490
+C G+ L GS+ +I C +IP G N E + G
Sbjct: 92 TCNEGYRLIGSSSAMCIISDQSVAWDAEAPICESIPCEIPPSIPNGDFFSPNREDFHYGM 151
Query: 491 EVLYSCSRNYR------LVGHPRRSCL----ESKVWSDTAPKC-------EGKATKDIKV 533
V Y C+ + R LVG P C + VWS P+C + V
Sbjct: 152 VVTYQCNTDARGKKLFNLVGEPSIHCTSIDGQVGVWSGPPPQCIELNKCTPPHVENAVIV 211
Query: 534 CSNVAV----DRREIRCPEPTLPAHSILSVTGNDRLYGRTLIKTADSASSVATYK----- 584
N ++ D E RC + + + G+ +Y R+L + S K
Sbjct: 212 SKNKSLFSLRDMVEFRCQDGFM-------MKGDSSVYCRSLNRWEPQLPSCFKVKSCGAF 264
Query: 585 IGALPTLPAHSILSVTGNDRLYGRTLIKTADSASSVATYKIGALVKYRCERGYKVEGEPL 644
+G LP G + ++GA V + C GY+++G
Sbjct: 265 LGELPN----------------GHVFVP--------QNLQLGAKVTFVCNTGYQLKGNSS 300
Query: 645 STCEDTGS---WSGSVPEC 660
S C G W+ SVP C
Sbjct: 301 SHCVLDGVESIWNSSVPVC 319
>pdb|1NTL|A Chain A, Model Of Mouse Crry-Ig Determined By Solution Scattering,
Curve Fitting And Homology Modelling
pdb|1NTL|B Chain B, Model Of Mouse Crry-Ig Determined By Solution Scattering,
Curve Fitting And Homology Modelling
Length = 551
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/341 (21%), Positives = 123/341 (36%), Gaps = 70/341 (20%)
Query: 425 DWCAEPPQISGG----IVTTSGRRTGSVATYSCEPGFILFGSNVNIDCG----------- 469
D C P Q+ + S G+ Y C PG+I +I C
Sbjct: 1 DHCPAPSQLPSAKPINLTDESMFPIGTYLLYECLPGYI--KRQFSITCKQDSTWTSAEDK 58
Query: 470 ------RLTAIPYGSISYLNETTYLGSEVLYSCSRNYRLVGHPRRSCL---ESKVWSDTA 520
+ + P + +++ GS + Y+C++ YRL+G C+ +S W A
Sbjct: 59 CIRKQCKTPSDPENGLVHVHTGIEFGSRINYTCNQGYRLIGSSSAVCVITDQSVDWDTEA 118
Query: 521 PKCEGKATKDIKVCSNVAVDRREIRCP-EPTLPAHSILSVTGNDRLYGRTLIKTADS-AS 578
P CE I C P +P S T D YG + ++ A
Sbjct: 119 PICEW------------------IPCEIPPGIPNGDFFSSTREDFHYGMVVTYRCNTDAR 160
Query: 579 SVATYKIGALPTL---------------PAHSILSVTGNDRLYGRTLIKTADSASSVATY 623
A + + P+L P I Y + +++ S +
Sbjct: 161 GKALFNLVGEPSLYCTSNDGEIGVWSGPPPQCIELNKCTPPPYVENAVMLSENRS---LF 217
Query: 624 KIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECIY-VDCGNPETVPNGGFTL---T 679
+ +V++RC G+ ++G C+ W +P C V C P+ + GF
Sbjct: 218 SLRDIVEFRCHPGFIMKGASSVHCQSLNKWEPELPSCFKGVICRLPQEM--SGFQKGLGM 275
Query: 680 SNATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTC 720
YYG V EC++ Y LEG ++ C +G+W+ L C
Sbjct: 276 KKEYYYGENVTLECEDGYTLEGSSQSQCQSDGSWNPLLAKC 316
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 103/284 (36%), Gaps = 69/284 (24%)
Query: 279 NCGSPDRHVNTTFVGTVSTKLGSTISYACPEGNMLVGSATRTC----KEGFWTGVAPTCQ 334
C +P N + GS I+Y C +G L+GS++ C + W AP C+
Sbjct: 63 QCKTPSDPENGLVHVHTGIEFGSRINYTCNQGYRLIGSSSAVCVITDQSVDWDTEAPICE 122
Query: 335 YFQLQ-PMDVPNLVLYLFLSKLFRESYERLNVDCGKLEHIEHGTVTLETTRTTHGAVAIY 393
+ + P +PN F + E + +G V Y
Sbjct: 123 WIPCEIPPGIPN-------GDFFSSTREDFH----------------------YGMVVTY 153
Query: 394 ACHEN------YTLIGETRRVC----GDGGKWNGTEPQCL-FDWCAEPPQISGGIVTTSG 442
C+ + + L+GE C G+ G W+G PQC+ + C PP + ++ +
Sbjct: 154 RCNTDARGKALFNLVGEPSLYCTSNDGEIGVWSGPPPQCIELNKCTPPPYVENAVMLSEN 213
Query: 443 RRTGS---VATYSCEPGFILFGSNVNIDC---------------GRLTAIPYGSISY--- 481
R S + + C PGFI+ G++ ++ C G + +P +
Sbjct: 214 RSLFSLRDIVEFRCHPGFIMKGAS-SVHCQSLNKWEPELPSCFKGVICRLPQEMSGFQKG 272
Query: 482 --LNETTYLGSEVLYSCSRNYRLVGHPRRSCLESKVWSDTAPKC 523
+ + Y G V C Y L G + C W+ KC
Sbjct: 273 LGMKKEYYYGENVTLECEDGYTLEGSSQSQCQSDGSWNPLLAKC 316
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 95/255 (37%), Gaps = 29/255 (11%)
Query: 624 KIGALVKYRCERGYKVEGEPLSTC---EDTGSWSGSVPECIYVDCGNPETVPNGG-FTLT 679
+ G+ + Y C +GY++ G + C + + W P C ++ C P +PNG F+ T
Sbjct: 82 EFGSRINYTCNQGYRLIGSSSAVCVITDQSVDWDTEAPICEWIPCEIPPGIPNGDFFSST 141
Query: 680 SNATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTCKGNEGHARRLCLENGTWSS 739
+YG V Y C+ + AR L N L C N+G E G WS
Sbjct: 142 REDFHYGMVVTYRCNTD------ARGKALFNLVGEPSL-YCTSNDG-------EIGVWSG 187
Query: 740 GLPTC---KGCKTPKKSLTRPALSCLPGKRFYYHRGIFRLQ----NTQKVSYTRTCTKRG 792
P C C P LS + + R I + K + + C
Sbjct: 188 PPPQCIELNKCTPPPYVENAVMLS--ENRSLFSLRDIVEFRCHPGFIMKGASSVHCQSLN 245
Query: 793 TWSGHIPTC-KAIDCSHPGSIDN-GRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCME 850
W +P+C K + C P + + + M + Y V C Y G +C
Sbjct: 246 KWEPELPSCFKGVICRLPQEMSGFQKGLGMKKEYYYGENVTLECEDGYTLEGSSQSQCQS 305
Query: 851 DGSWSGDEPRCEKRF 865
DGSW+ +C R
Sbjct: 306 DGSWNPLLAKCVSRL 320
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/248 (20%), Positives = 96/248 (38%), Gaps = 17/248 (6%)
Query: 621 ATYKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGFTLTS 680
+ + IG + Y C GY ++ + TC+ +W+ + +CI C P P G
Sbjct: 21 SMFPIGTYLLYECLPGY-IKRQFSITCKQDSTWTSAEDKCIRKQCKTPSD-PENGLVHVH 78
Query: 681 NATYYGTAVLYECDENYRLEGHARRLCL---ENGTWSSGLPTCKGNEGHARRLCLENGTW 737
+G+ + Y C++ YRL G + +C+ ++ W + P C+
Sbjct: 79 TGIEFGSRINYTCNQGYRLIGSSSAVCVITDQSVDWDTEAPICEWIPCEI---------- 128
Query: 738 SSGLPTCKGCKTPKKSLTRPALSCLPGKRFYYHRGIFRLQNTQKVSYTRTCTKRGTWSGH 797
G+P + ++ + + +F L + T + G WSG
Sbjct: 129 PPGIPNGDFFSSTREDFHYGMVVTYRCNTDARGKALFNLVGEPSLYCTSNDGEIGVWSGP 188
Query: 798 IPTCKAID-CSHPGSIDNGRVIIMNQTT-TYNSAVEYHCVPQYQRIGPYLRKCMEDGSWS 855
P C ++ C+ P ++N ++ N++ + VE+ C P + G C W
Sbjct: 189 PPQCIELNKCTPPPYVENAVMLSENRSLFSLRDIVEFRCHPGFIMKGASSVHCQSLNKWE 248
Query: 856 GDEPRCEK 863
+ P C K
Sbjct: 249 PELPSCFK 256
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 77/318 (24%), Positives = 107/318 (33%), Gaps = 70/318 (22%)
Query: 388 GAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCLFDWCAEPPQISGGIV-TTSGRRTG 446
G +Y C Y + + C W E +C+ C P G+V +G G
Sbjct: 26 GTYLLYECLPGY-IKRQFSITCKQDSTWTSAEDKCIRKQCKTPSDPENGLVHVHTGIEFG 84
Query: 447 SVATYSCEPGFILFGSNVN--------------------IDCGRLTAIPYGS-ISYLNET 485
S Y+C G+ L GS+ I C IP G S E
Sbjct: 85 SRINYTCNQGYRLIGSSSAVCVITDQSVDWDTEAPICEWIPCEIPPGIPNGDFFSSTRED 144
Query: 486 TYLGSEVLYSCSRNYR------LVGHPRRSCL----ESKVWSDTAPKC--EGKATKDIKV 533
+ G V Y C+ + R LVG P C E VWS P+C K T V
Sbjct: 145 FHYGMVVTYRCNTDARGKALFNLVGEPSLYCTSNDGEIGVWSGPPPQCIELNKCTPPPYV 204
Query: 534 CSNVAV----------DRREIRCPEPTLPAHSILSVTGNDRLYGRTLIKTADSASSVATY 583
+ V + D E RC H + G ++ ++L K S
Sbjct: 205 ENAVMLSENRSLFSLRDIVEFRC-------HPGFIMKGASSVHCQSLNKWEPELPSCFKG 257
Query: 584 KIGALPTLPAHSILSVTGNDRLYGRTLIKTADSASSVATYKIGALVKYRCERGYKVEGEP 643
I LP ++G + G Y G V CE GY +EG
Sbjct: 258 VICRLPQ-------EMSGFQKGLGMK-----------KEYYYGENVTLECEDGYTLEGSS 299
Query: 644 LSTCEDTGSWSGSVPECI 661
S C+ GSW+ + +C+
Sbjct: 300 QSQCQSDGSWNPLLAKCV 317
>pdb|3O8E|B Chain B, Structure Of Extracelllar Portion Of Cd46 In Complex With
Adenovirus Type 11 Knob
pdb|3O8E|D Chain D, Structure Of Extracelllar Portion Of Cd46 In Complex With
Adenovirus Type 11 Knob
Length = 252
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 89/244 (36%), Gaps = 55/244 (22%)
Query: 588 LPTLPAHSILS------VTGNDRLYGRTLIKTADSASSVA-----TYKIGALVKYRCERG 636
+P L H+I +D Y T D + A TY+ G + + C G
Sbjct: 37 IPPLATHTICDRNHTWLPVSDDACYRETCPYIRDPLNGQAVPANGTYEFGYQMHFICNEG 96
Query: 637 YKVEGEPLSTCEDTGS---WSGSVPECIYVDCGNPETVPNGGFTLTSNATY-YGTAVLYE 692
Y + GE + CE GS WSG P C V C P + NG T + + Y AV Y
Sbjct: 97 YYLIGEEILYCELKGSVAIWSGKPPICEKVLCTPPPKIKNGKHTFSEVEVFEYLDAVTYS 156
Query: 693 CD-----ENYRLEGHARRLCLENGTWSSGLPTCKGNEGHARRLCLENGTWSSGLPTCKGC 747
CD + + L G + C +N WS P CK + R +ENG SG
Sbjct: 157 CDPAPGPDPFSLIGESTIYCGDNSVWSRAAPECKVVK--CRFPVVENGKQISGF------ 208
Query: 748 KTPKKSLTRPALSCLPGKRFYYHRGI-------FRLQNTQKVSYTRTCTKRGTWSGHIPT 800
GK+FYY + F L + T C TW +P
Sbjct: 209 ----------------GKKFYYKATVMFECDKGFYLDGSD----TIVCDSNSTWDPPVPK 248
Query: 801 CKAI 804
C +
Sbjct: 249 CLKV 252
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 59/160 (36%), Gaps = 30/160 (18%)
Query: 393 YACHENYTLIGETRRVC---GDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRRTG--- 446
+ C+E Y LIGE C G W+G P C C PP+I G T S
Sbjct: 91 FICNEGYYLIGEEILYCELKGSVAIWSGKPPICEKVLCTPPPKIKNGKHTFSEVEVFEYL 150
Query: 447 SVATYSCEPG-----FILFGSNVNIDCG-----------------RLTAIPYG-SISYLN 483
TYSC+P F L G + I CG R + G IS
Sbjct: 151 DAVTYSCDPAPGPDPFSLIGES-TIYCGDNSVWSRAAPECKVVKCRFPVVENGKQISGFG 209
Query: 484 ETTYLGSEVLYSCSRNYRLVGHPRRSCLESKVWSDTAPKC 523
+ Y + V++ C + + L G C + W PKC
Sbjct: 210 KKFYYKATVMFECDKGFYLDGSDTIVCDSNSTWDPPVPKC 249
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 94/249 (37%), Gaps = 25/249 (10%)
Query: 623 YKIGALVKYRCERGYKVEGEPLST---CEDTGSWSGSVPECIYVDCGNPETVPNGGFTLT 679
Y+IG V Y+C++GY PL+T C+ +W + Y + P G +
Sbjct: 20 YEIGERVDYKCKKGY-FYIPPLATHTICDRNHTWLPVSDDACYRETCPYIRDPLNGQAVP 78
Query: 680 SNATY-YGTAVLYECDENYRLEGHARRLCLENGT---WSSGLPTCKGNEGHARRLCLENG 735
+N TY +G + + C+E Y L G C G+ WS P C+ + LC
Sbjct: 79 ANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPPICE------KVLCTPPP 132
Query: 736 TWSSGLPTCKGCKTPKKSLTRPALSCLPGKRFYYHRGIFRLQNTQKVSYTRTCTKRGTWS 795
+G T + + L SC P F L T C WS
Sbjct: 133 KIKNGKHTFSEVEV-FEYLDAVTYSCDPAP----GPDPFSLIGES----TIYCGDNSVWS 183
Query: 796 GHIPTCKAIDCSHPGSIDNGRVII-MNQTTTYNSAVEYHCVPQYQRIGPYLRKCMEDGSW 854
P CK + C P ++NG+ I + Y + V + C + G C + +W
Sbjct: 184 RAAPECKVVKCRFP-VVENGKQISGFGKKFYYKATVMFECDKGFYLDGSDTIVCDSNSTW 242
Query: 855 SGDEPRCEK 863
P+C K
Sbjct: 243 DPPVPKCLK 251
>pdb|3IYP|F Chain F, The Interaction Of Decay-Accelerating Factor With
Echovirus 7
Length = 381
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 100/259 (38%), Gaps = 29/259 (11%)
Query: 622 TYKIGALVKYRCERGY-KVEGEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGFT--- 677
++ ++ Y+CE + K+ GE S GS + E C P + +
Sbjct: 54 SFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFCNRSCEVPTRLNSASLKQPY 113
Query: 678 LTSNATYYGTAVLYECDENYRLEGH--ARRLCLENGTWSSGLPTCKGNEGHARRLCLENG 735
+T N GT V YEC YR E + CL+N WS+ + CK ++ C G
Sbjct: 114 ITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWSTAVEFCK------KKSCPNPG 167
Query: 736 TWSSGLPTCKGCKTPKKSLTRPALSCLPGKRFYYHRGIFRLQNTQKVSYTRTCTKRGTWS 795
+G G ++ + SC G + + F L + V WS
Sbjct: 168 EIRNGQIDVPGGILFGATI---SFSCNTGYKLFGSTSSFCLISGSSVQ----------WS 214
Query: 796 GHIPTCKAIDCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCM---EDG 852
+P C+ I C P IDNG + Y +V Y C + IG + C ++G
Sbjct: 215 DPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEG 274
Query: 853 SWSGDEPRCE-KRFNSGIP 870
WSG P C K S +P
Sbjct: 275 EWSGPPPECRGKSLTSKVP 293
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 388 GAVAIYACHENYTLIGETRRVC---GDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRR 444
GA ++C+ Y L G T C G +W+ P+C +C PPQI GI+
Sbjct: 183 GATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECREIYCPAPPQIDNGIIQGERDH 242
Query: 445 TG--SVATYSCEPGFILFGSN-----VNIDCGRLTAIP 475
G TY+C GF + G + VN D G + P
Sbjct: 243 YGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPP 280
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 50/131 (38%), Gaps = 36/131 (27%)
Query: 299 LGSTISYACPEGNMLVGSATRTC----KEGFWTGVAPTCQYFQLQPMDVPNLVLYLFLSK 354
G+TIS++C G L GS + C W+ P C
Sbjct: 182 FGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPEC--------------------- 220
Query: 355 LFRESYERLNVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC---GD 411
RE Y C I++G + E + YAC++ +T+IGE C D
Sbjct: 221 --REIY------CPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNND 272
Query: 412 GGKWNGTEPQC 422
G+W+G P+C
Sbjct: 273 EGEWSGPPPEC 283
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 94/265 (35%), Gaps = 48/265 (18%)
Query: 427 CAEPPQISGGIVTTSGRRT---GSVATYSCEPGFILFG--------------SNVNIDCG 469
C PP + GR + +V TY CE F+ S++ C
Sbjct: 36 CGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFCN 95
Query: 470 RLTAIP--YGSIS----YLNETTY-LGSEVLYSCSRNYRLVGH--PRRSCLESKVWSDTA 520
R +P S S Y+ + + +G+ V Y C YR P+ +CL++ WS
Sbjct: 96 RSCEVPTRLNSASLKQPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWSTAV 155
Query: 521 PKCEGKATKDIKVCSNVAVDRR-EIRCPEPTLPAHSI-LSVTGNDRLYGRTLIKTADSAS 578
C+ K+ C N R +I P L +I S +L+G T S S
Sbjct: 156 EFCKKKS------CPNPGEIRNGQIDVPGGILFGATISFSCNTGYKLFGSTSSFCLISGS 209
Query: 579 SVATYKIGALPTLPAHSILSVTGNDRLYGRTLIKTADSASSVATYKIGALVKYRCERGYK 638
SV LP + ++ + D Y V Y C +G+
Sbjct: 210 SVQWSD-----PLPECREIYCPAPPQIDNGIIQGERDH------YGYRQSVTYACNKGFT 258
Query: 639 VEGEPLSTC---EDTGSWSGSVPEC 660
+ GE C D G WSG PEC
Sbjct: 259 MIGEHSIYCTVNNDEGEWSGPPPEC 283
Score = 36.2 bits (82), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 58/166 (34%), Gaps = 26/166 (15%)
Query: 388 GAVAIYACHENYTLIGE--TRRVCGDGGKWNGTEPQCLFDWCAEPPQI-SGGIVTTSGRR 444
G V Y C Y + C KW+ C C P +I +G I G
Sbjct: 122 GTVVEYECRPGYRREPSLSPKLTCLQNLKWSTAVEFCKKKSCPNPGEIRNGQIDVPGGIL 181
Query: 445 TGSVATYSCEPGFILFGSNVN--------------------IDCGRLTAIPYGSISYLNE 484
G+ ++SC G+ LFGS + I C I G I +
Sbjct: 182 FGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECREIYCPAPPQIDNGIIQGERD 241
Query: 485 TTYLGSEVLYSCSRNYRLVGHPRRSCL---ESKVWSDTAPKCEGKA 527
V Y+C++ + ++G C + WS P+C GK+
Sbjct: 242 HYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPPPECRGKS 287
>pdb|2XRB|A Chain A, Structure Of The N-Terminal Four Domains Of The Complement
Regulator Rat Crry
pdb|2XRD|A Chain A, Structure Of The N-Terminal Four Domains Of The Complement
Regulator Rat Crry
Length = 290
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 97/253 (38%), Gaps = 32/253 (12%)
Query: 621 ATYKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGFTLTS 680
+T+ +G +KY C GY ++ + TCE W+ CI C P P G +
Sbjct: 56 STFPVGTSLKYECRPGY-IKRQFSITCEVNSVWTSPQDVCIRKQCETPLD-PQNGIVHVN 113
Query: 681 NATYYGTAVLYECDENYRLEGHARRLCL---ENGTWSSGLPTCKGNEGHARRLCLENGTW 737
+G+++ Y C+E YRL G + +C+ ++ W + P C+ + NG +
Sbjct: 114 TDIRFGSSITYTCNEGYRLIGSSSAMCIISDQSVAWDAEAPICESIPCEIPP-SIPNGDF 172
Query: 738 SS--------GLPTCKGCKTPKKSLTRPALSCLPGKRFYYHRGIFRLQNTQKVSYTRTCT 789
S G+ C T + GK+ +F L + T
Sbjct: 173 FSPNREDFHYGMVVTYQCNTDAR-----------GKK------LFNLVGEPSIHCTSIDG 215
Query: 790 KRGTWSGHIPTCKAIDCSHPGSIDNGRVIIMNQTT-TYNSAVEYHCVPQYQRIGPYLRKC 848
+ G WSG P C ++ P ++N ++ N++ + VE+ C + G C
Sbjct: 216 QVGVWSGPPPQCIELNKCTPPHVENAVIVSKNKSLFSLRDMVEFRCQDGFMMKGDSSVYC 275
Query: 849 MEDGSWSGDEPRC 861
W P C
Sbjct: 276 RSLNRWEPQLPSC 288
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 76/196 (38%), Gaps = 53/196 (27%)
Query: 286 HVNTTFVGTVSTKLGSTISYACPEGNMLVGSATRTC----KEGFWTGVAPTCQYFQLQ-P 340
HVNT + GS+I+Y C EG L+GS++ C + W AP C+ + P
Sbjct: 111 HVNTDI------RFGSSITYTCNEGYRLIGSSSAMCIISDQSVAWDAEAPICESIPCEIP 164
Query: 341 MDVPNLVLYLFLSKLFRESYERLNVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHEN-- 398
+PN F + E + +G V Y C+ +
Sbjct: 165 PSIPN-------GDFFSPNREDFH----------------------YGMVVTYQCNTDAR 195
Query: 399 ----YTLIGETRRVC----GDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRRTGS--- 447
+ L+GE C G G W+G PQC+ PP + ++ + + S
Sbjct: 196 GKKLFNLVGEPSIHCTSIDGQVGVWSGPPPQCIELNKCTPPHVENAVIVSKNKSLFSLRD 255
Query: 448 VATYSCEPGFILFGSN 463
+ + C+ GF++ G +
Sbjct: 256 MVEFRCQDGFMMKGDS 271
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/201 (19%), Positives = 74/201 (36%), Gaps = 32/201 (15%)
Query: 475 PYGSISYLNETTYLGSEVLYSCSRNYRLVGHPRRSCL---ESKVWSDTAPKCEGKATKDI 531
P I ++N GS + Y+C+ YRL+G C+ +S W AP CE
Sbjct: 105 PQNGIVHVNTDIRFGSSITYTCNEGYRLIGSSSAMCIISDQSVAWDAEAPICESIPC--- 161
Query: 532 KVCSNVAVDRREIRCPEPTLPAHSILSVTGNDRLYGRTLIKTADS-ASSVATYKIGALPT 590
EI P++P S D YG + ++ A + + P+
Sbjct: 162 -----------EI---PPSIPNGDFFSPNREDFHYGMVVTYQCNTDARGKKLFNLVGEPS 207
Query: 591 LPAHSILSVTGN-----------DRLYGRTLIKTADSASSVATYKIGALVKYRCERGYKV 639
+ SI G ++ + + + + + + +V++RC+ G+ +
Sbjct: 208 IHCTSIDGQVGVWSGPPPQCIELNKCTPPHVENAVIVSKNKSLFSLRDMVEFRCQDGFMM 267
Query: 640 EGEPLSTCEDTGSWSGSVPEC 660
+G+ C W +P C
Sbjct: 268 KGDSSVYCRSLNRWEPQLPSC 288
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 58/163 (35%), Gaps = 33/163 (20%)
Query: 393 YACHENYTLIGETRRVCGDGGKWNGTEPQCLFDWCAEPPQISGGIV-TTSGRRTGSVATY 451
Y C Y + + C W + C+ C P GIV + R GS TY
Sbjct: 66 YECRPGY-IKRQFSITCEVNSVWTSPQDVCIRKQCETPLDPQNGIVHVNTDIRFGSSITY 124
Query: 452 SCEPGFILFGSNV--------------------NIDCGRLTAIPYGSISYLN-ETTYLGS 490
+C G+ L GS+ +I C +IP G N E + G
Sbjct: 125 TCNEGYRLIGSSSAMCIISDQSVAWDAEAPICESIPCEIPPSIPNGDFFSPNREDFHYGM 184
Query: 491 EVLYSCSRNYR------LVGHPRRSCL----ESKVWSDTAPKC 523
V Y C+ + R LVG P C + VWS P+C
Sbjct: 185 VVTYQCNTDARGKKLFNLVGEPSIHCTSIDGQVGVWSGPPPQC 227
>pdb|2C8I|E Chain E, Complex Of Echovirus Type 12 With Domains 1, 2, 3 And 4 Of
Its Receptor Decay Accelerating Factor (Cd55) By Cryo
Electron Microscopy At 16 A
Length = 316
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 96/249 (38%), Gaps = 28/249 (11%)
Query: 622 TYKIGALVKYRCERGY-KVEGEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGFT--- 677
++ ++ Y+CE + K+ GE S GS + E C P + +
Sbjct: 85 SFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFCNRSCEVPTRLNSASLKQPY 144
Query: 678 LTSNATYYGTAVLYECDENYRLEGH--ARRLCLENGTWSSGLPTCKGNEGHARRLCLENG 735
+T N GT V YEC YR E + CL+N WS+ + CK ++ C G
Sbjct: 145 ITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWSTAVEFCK------KKSCPNPG 198
Query: 736 TWSSGLPTCKGCKTPKKSLTRPALSCLPGKRFYYHRGIFRLQNTQKVSYTRTCTKRGTWS 795
+G G ++ + SC G + + F L + V WS
Sbjct: 199 EIRNGQIDVPGGILFGATI---SFSCNTGYKLFGSTSSFCLISGSSVQ----------WS 245
Query: 796 GHIPTCKAIDCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCM---EDG 852
+P C+ I C P IDNG + Y +V Y C + IG + C ++G
Sbjct: 246 DPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEG 305
Query: 853 SWSGDEPRC 861
WSG P C
Sbjct: 306 EWSGPPPEC 314
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 91/390 (23%), Positives = 130/390 (33%), Gaps = 108/390 (27%)
Query: 366 DCGKLEHIEHGTVTLE-TTRTTHGAVAIYACHENYTLI-GETRRV-CGDGGKWNGTEPQC 422
DCG + + LE T V Y C E++ I GE V C G +W+ E C
Sbjct: 2 DCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFC 61
Query: 423 LFDW-CAEPPQISGGIVTTSGRRT---GSVATYSCEPGFILFG--------------SNV 464
C PP + GR + +V TY CE F+ S++
Sbjct: 62 NRSQDCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDI 121
Query: 465 NIDCGRLTAIP--YGSIS----YLNETTY-LGSEVLYSCSRNYRLVGH--PRRSCLESKV 515
C R +P S S Y+ + + +G+ V Y C YR P+ +CL++
Sbjct: 122 EEFCNRSCEVPTRLNSASLKQPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLK 181
Query: 516 WSDTAPKCEGKATKDIKVCSNVAVDRREIRCPEPTLPAHSILSVTGNDRLYGRTLIKTAD 575
WS C+ K+ CP P + + V G L+G T+
Sbjct: 182 WSTAVEFCKKKS------------------CPNPGEIRNGQIDVPGG-ILFGATI----- 217
Query: 576 SASSVATYKIGALPTLPAHSILSVTGNDRLYGRTLIKTADSASSVATYKIGALVKYRCER 635
S S YK L+G T S SSV
Sbjct: 218 SFSCNTGYK--------------------LFGSTSSFCLISGSSV--------------- 242
Query: 636 GYKVEGEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGFTLTSNATYYGTAVLYECDE 695
WS +PEC + C P + NG + Y +V Y C++
Sbjct: 243 ----------------QWSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNK 286
Query: 696 NYRLEGHARRLCLEN---GTWSSGLPTCKG 722
+ + G C N G WS P C+G
Sbjct: 287 GFTMIGEHSIYCTVNNDEGEWSGPPPECRG 316
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 50/131 (38%), Gaps = 36/131 (27%)
Query: 299 LGSTISYACPEGNMLVGSATRTC----KEGFWTGVAPTCQYFQLQPMDVPNLVLYLFLSK 354
G+TIS++C G L GS + C W+ P C
Sbjct: 213 FGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPEC--------------------- 251
Query: 355 LFRESYERLNVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC---GD 411
RE Y C I++G + E + YAC++ +T+IGE C D
Sbjct: 252 --REIY------CPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNND 303
Query: 412 GGKWNGTEPQC 422
G+W+G P+C
Sbjct: 304 EGEWSGPPPEC 314
>pdb|1OJV|A Chain A, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJV|B Chain B, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJW|A Chain A, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJW|B Chain B, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJY|A Chain A, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJY|B Chain B, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJY|C Chain C, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJY|D Chain D, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK1|A Chain A, Decay Accelerating Factor (cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK1|B Chain B, Decay Accelerating Factor (cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK2|A Chain A, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK2|B Chain B, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK9|A Chain A, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK9|B Chain B, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|3J24|B Chain B, Cryoem Reconstruction Of Complement Decay-Accelerating
Factor
Length = 254
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 96/249 (38%), Gaps = 28/249 (11%)
Query: 622 TYKIGALVKYRCERGY-KVEGEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGFT--- 677
++ ++ Y+CE + K+ GE S GS + E C P + +
Sbjct: 22 SFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFCNRSCEVPTRLNSASLKQPY 81
Query: 678 LTSNATYYGTAVLYECDENYRLEGH--ARRLCLENGTWSSGLPTCKGNEGHARRLCLENG 735
+T N GT V YEC YR E + CL+N WS+ + CK ++ C G
Sbjct: 82 ITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWSTAVEFCK------KKSCPNPG 135
Query: 736 TWSSGLPTCKGCKTPKKSLTRPALSCLPGKRFYYHRGIFRLQNTQKVSYTRTCTKRGTWS 795
+G G +++ SC G + + F L + V WS
Sbjct: 136 EIRNGQIDVPGGILFGATIS---FSCNTGYKLFGSTSSFCLISGSSVQ----------WS 182
Query: 796 GHIPTCKAIDCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCM---EDG 852
+P C+ I C P IDNG + Y +V Y C + IG + C ++G
Sbjct: 183 DPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEG 242
Query: 853 SWSGDEPRC 861
WSG P C
Sbjct: 243 EWSGPPPEC 251
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 625 IGALVKYRCERGYKVEGEPLSTCEDTGS---WSGSVPECIYVDCGNPETVPNGGFTLTSN 681
GA + + C GYK+ G S C +GS WS +PEC + C P + NG +
Sbjct: 150 FGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECREIYCPAPPQIDNGIIQGERD 209
Query: 682 ATYYGTAVLYECDENYRLEGHARRLCLEN---GTWSSGLPTCKG 722
Y +V Y C++ + + G C N G WS P C+G
Sbjct: 210 HYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPPPECRG 253
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 10/99 (10%)
Query: 387 HGAVAIYACHENYTLIGETRRVC---GDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGR 443
GA ++C+ Y L G T C G +W+ P+C +C PPQI GI+
Sbjct: 150 FGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECREIYCPAPPQIDNGIIQGERD 209
Query: 444 RTG--SVATYSCEPGFILFGSN-----VNIDCGRLTAIP 475
G TY+C GF + G + VN D G + P
Sbjct: 210 HYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPP 248
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 50/131 (38%), Gaps = 36/131 (27%)
Query: 299 LGSTISYACPEGNMLVGSATRTC----KEGFWTGVAPTCQYFQLQPMDVPNLVLYLFLSK 354
G+TIS++C G L GS + C W+ P C
Sbjct: 150 FGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPEC--------------------- 188
Query: 355 LFRESYERLNVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC---GD 411
RE Y C I++G + E + YAC++ +T+IGE C D
Sbjct: 189 --REIY------CPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNND 240
Query: 412 GGKWNGTEPQC 422
G+W+G P+C
Sbjct: 241 EGEWSGPPPEC 251
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 56/164 (34%), Gaps = 26/164 (15%)
Query: 388 GAVAIYACHENYTLIGE--TRRVCGDGGKWNGTEPQCLFDWCAEPPQI-SGGIVTTSGRR 444
G V Y C Y + C KW+ C C P +I +G I G
Sbjct: 90 GTVVEYECRPGYRREPSLSPKLTCLQNLKWSTAVEFCKKKSCPNPGEIRNGQIDVPGGIL 149
Query: 445 TGSVATYSCEPGFILFGSNVN--------------------IDCGRLTAIPYGSISYLNE 484
G+ ++SC G+ LFGS + I C I G I +
Sbjct: 150 FGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECREIYCPAPPQIDNGIIQGERD 209
Query: 485 TTYLGSEVLYSCSRNYRLVGHPRRSCL---ESKVWSDTAPKCEG 525
V Y+C++ + ++G C + WS P+C G
Sbjct: 210 HYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPPPECRG 253
>pdb|1OK3|A Chain A, Decay Accelerating Factor (cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK3|B Chain B, Decay Accelerating Factor (cd55): The Structure Of An
Intact Human Complement Regulator
Length = 254
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 96/249 (38%), Gaps = 28/249 (11%)
Query: 622 TYKIGALVKYRCERGY-KVEGEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGFT--- 677
++ ++ Y+CE + K+ GE S GS + E C P + +
Sbjct: 22 SFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFCNRSCEVPTRLNSASLKQPY 81
Query: 678 LTSNATYYGTAVLYECDENYRLEGH--ARRLCLENGTWSSGLPTCKGNEGHARRLCLENG 735
+T N GT V YEC YR E + CL+N WS+ + CK ++ C G
Sbjct: 82 ITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWSTAVEFCK------KKSCPNPG 135
Query: 736 TWSSGLPTCKGCKTPKKSLTRPALSCLPGKRFYYHRGIFRLQNTQKVSYTRTCTKRGTWS 795
+G G +++ SC G + + F L + V WS
Sbjct: 136 EIRNGQIDVPGGILFGATIS---FSCNTGYKLFGSTSSFCLISGSSVQ----------WS 182
Query: 796 GHIPTCKAIDCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCM---EDG 852
+P C+ I C P IDNG + Y +V Y C + IG + C ++G
Sbjct: 183 DPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTXIGEHSIYCTVNNDEG 242
Query: 853 SWSGDEPRC 861
WSG P C
Sbjct: 243 EWSGPPPEC 251
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 6/104 (5%)
Query: 625 IGALVKYRCERGYKVEGEPLSTCEDTGS---WSGSVPECIYVDCGNPETVPNGGFTLTSN 681
GA + + C GYK+ G S C +GS WS +PEC + C P + NG +
Sbjct: 150 FGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECREIYCPAPPQIDNGIIQGERD 209
Query: 682 ATYYGTAVLYECDENYRLEGHARRLCLEN---GTWSSGLPTCKG 722
Y +V Y C++ + G C N G WS P C+G
Sbjct: 210 HYGYRQSVTYACNKGFTXIGEHSIYCTVNNDEGEWSGPPPECRG 253
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 10/99 (10%)
Query: 387 HGAVAIYACHENYTLIGETRRVC---GDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGR 443
GA ++C+ Y L G T C G +W+ P+C +C PPQI GI+
Sbjct: 150 FGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECREIYCPAPPQIDNGIIQGERD 209
Query: 444 RTG--SVATYSCEPGFILFGSN-----VNIDCGRLTAIP 475
G TY+C GF G + VN D G + P
Sbjct: 210 HYGYRQSVTYACNKGFTXIGEHSIYCTVNNDEGEWSGPP 248
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 49/131 (37%), Gaps = 36/131 (27%)
Query: 299 LGSTISYACPEGNMLVGSATRTC----KEGFWTGVAPTCQYFQLQPMDVPNLVLYLFLSK 354
G+TIS++C G L GS + C W+ P C
Sbjct: 150 FGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPEC--------------------- 188
Query: 355 LFRESYERLNVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC---GD 411
RE Y C I++G + E + YAC++ +T IGE C D
Sbjct: 189 --REIY------CPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTXIGEHSIYCTVNND 240
Query: 412 GGKWNGTEPQC 422
G+W+G P+C
Sbjct: 241 EGEWSGPPPEC 251
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 55/164 (33%), Gaps = 26/164 (15%)
Query: 388 GAVAIYACHENYTLIGE--TRRVCGDGGKWNGTEPQCLFDWCAEPPQI-SGGIVTTSGRR 444
G V Y C Y + C KW+ C C P +I +G I G
Sbjct: 90 GTVVEYECRPGYRREPSLSPKLTCLQNLKWSTAVEFCKKKSCPNPGEIRNGQIDVPGGIL 149
Query: 445 TGSVATYSCEPGFILFGSNVN--------------------IDCGRLTAIPYGSISYLNE 484
G+ ++SC G+ LFGS + I C I G I +
Sbjct: 150 FGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECREIYCPAPPQIDNGIIQGERD 209
Query: 485 TTYLGSEVLYSCSRNYRLVGHPRRSCL---ESKVWSDTAPKCEG 525
V Y+C++ + +G C + WS P+C G
Sbjct: 210 HYGYRQSVTYACNKGFTXIGEHSIYCTVNNDEGEWSGPPPECRG 253
>pdb|2WII|C Chain C, Complement C3b In Complex With Factor H Domains 1-4
Length = 277
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 86/228 (37%), Gaps = 30/228 (13%)
Query: 619 SVATYKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVP--ECIYVDCGNPETVPNGGF 676
S TY G Y+C GY+ G + C G W P +C CG+P P G F
Sbjct: 25 SDQTYPEGTQAIYKCRPGYRSLGNIIMVCR-KGEWVALNPLRKCQKRPCGHPGDTPFGTF 83
Query: 677 TLTS-NATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTCKGNEGHARRLCLENG 735
TLT N YG +Y C+E Y+L G + W++ +P C+
Sbjct: 84 TLTGGNVFEYGVKAVYTCNEGYQLLGEINYRECDTDGWTNDIPICE-------------- 129
Query: 736 TWSSGLPTCKGCKTPKK-SLTRPALSCLPGKRFYYHRGI-FRLQNTQKVSYTRT--CTKR 791
+ C P+ + A+ P + +++ + + F + K+ C+
Sbjct: 130 -----VVKCLPVTAPENGKIVSSAME--PDREYHFGQAVRFVCNSGYKIEGDEEMHCSDD 182
Query: 792 GTWSGHIPTCKAIDCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQ 839
G WS P C I C P I NG I N +Y C Y+
Sbjct: 183 GFWSKEKPKCVEISCKSPDVI-NGSPISQKIIYKENERFQYKCNMGYE 229
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 623 YKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGFTLTSNA 682
Y G V++ C GYK+EG+ C D G WS P+C+ + C +P+ + G ++
Sbjct: 155 YHFGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKEKPKCVEISCKSPDVI--NGSPISQKI 212
Query: 683 TYYGTAVL-YECDENYRLEGHARRLCLENGTWSSGLPTCKGNEG 725
Y Y+C+ Y +C E+G W LP+C+ G
Sbjct: 213 IYKENERFQYKCNMGYEYSERGDAVCTESG-WRP-LPSCEEARG 254
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 64/174 (36%), Gaps = 38/174 (21%)
Query: 273 CQHNPANCGSP-DRHVNT-TFVGTVSTKLGSTISYACPEGNMLVGSAT-RTCKEGFWTGV 329
CQ P CG P D T T G + G Y C EG L+G R C WT
Sbjct: 67 CQKRP--CGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQLLGEINYRECDTDGWTND 124
Query: 330 APTCQYFQLQPMDVPNLVLYLFLSKLFRESYERLNVDCGKLEHIEHGTV---TLETTRTT 386
P C+ + P+ P E+G + +E R
Sbjct: 125 IPICEVVKCLPVTAP-----------------------------ENGKIVSSAMEPDREY 155
Query: 387 HGAVAI-YACHENYTLIGETRRVCGDGGKWNGTEPQCLFDWCAEPPQISGGIVT 439
H A+ + C+ Y + G+ C D G W+ +P+C+ C P I+G ++
Sbjct: 156 HFGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKEKPKCVEISCKSPDVINGSPIS 209
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 66/185 (35%), Gaps = 29/185 (15%)
Query: 387 HGAVAIYACHENYTLIGETRRVCGDGGKWNGTEP--QCLFDWCAEPPQISGGIVTTSGRR 444
G AIY C Y +G VC G +W P +C C P G T +G
Sbjct: 31 EGTQAIYKCRPGYRSLGNIIMVCRKG-EWVALNPLRKCQKRPCGHPGDTPFGTFTLTGGN 89
Query: 445 T---GSVATYSCEPGFILFGSNVN------------------IDCGRLTAIPYGSI---- 479
G A Y+C G+ L G +N + C +TA G I
Sbjct: 90 VFEYGVKAVYTCNEGYQLLGE-INYRECDTDGWTNDIPICEVVKCLPVTAPENGKIVSSA 148
Query: 480 SYLNETTYLGSEVLYSCSRNYRLVGHPRRSCLESKVWSDTAPKCEGKATKDIKVCSNVAV 539
+ + G V + C+ Y++ G C + WS PKC + K V + +
Sbjct: 149 MEPDREYHFGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKEKPKCVEISCKSPDVINGSPI 208
Query: 540 DRREI 544
++ I
Sbjct: 209 SQKII 213
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 78/187 (41%), Gaps = 24/187 (12%)
Query: 680 SNATY-YGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTCKGNEGHARRLCLENGTWS 738
S+ TY GT +Y+C YR G+ +C G W + P K +R C G
Sbjct: 25 SDQTYPEGTQAIYKCRPGYRSLGNIIMVC-RKGEWVALNPLRKCQ----KRPCGHPGDTP 79
Query: 739 SGLPTCKGCKTPKKSLTRPALSCLPGKRFYYHRGIFRLQNTQKVSYTRTCTKRGTWSGHI 798
G T G + + + +C G Q +++Y R C G W+ I
Sbjct: 80 FGTFTLTGGNVFEYGV-KAVYTCNEG-----------YQLLGEINY-RECDTDG-WTNDI 125
Query: 799 PTCKAIDCSHPGSIDNGRVIIM----NQTTTYNSAVEYHCVPQYQRIGPYLRKCMEDGSW 854
P C+ + C + +NG+++ ++ + AV + C Y+ G C +DG W
Sbjct: 126 PICEVVKCLPVTAPENGKIVSSAMEPDREYHFGQAVRFVCNSGYKIEGDEEMHCSDDGFW 185
Query: 855 SGDEPRC 861
S ++P+C
Sbjct: 186 SKEKPKC 192
>pdb|2QFG|A Chain A, Solution Structure Of The N-Terminal Scr-15 FRAGMENT OF
Complement Factor H
Length = 312
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 89/224 (39%), Gaps = 22/224 (9%)
Query: 619 SVATYKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVP--ECIYVDCGNPETVPNGGF 676
S TY G Y+C GY+ G + C G W P +C CG+P P G F
Sbjct: 22 SDQTYPEGTQAIYKCRPGYRSLGNVIMVCR-KGEWVALNPLRKCQKRPCGHPGDTPFGTF 80
Query: 677 TLTS-NATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTCKGNEGHARRLCLENG 735
TLT N YG +Y C+E Y+L G + W++ +P C+ + CL
Sbjct: 81 TLTGGNVFEYGVKAVYTCNEGYQLLGEINYRECDTDGWTNDIPICEVVK------CLPVT 134
Query: 736 TWSSGLPTCKGCKTPKKSLTRPALSCLPGKRFYYHRGIFRLQNTQKVSYTRTCTKRGTWS 795
+G + ++ A+ RF + G ++++ +++ C+ G WS
Sbjct: 135 APENGKIVSSAMEPDREYHFGQAV------RFVCNSG-YKIEGDEEMH----CSDDGFWS 183
Query: 796 GHIPTCKAIDCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQ 839
P C I C P I NG I N +Y C Y+
Sbjct: 184 KEKPKCVEISCKSPDVI-NGSPISQKIIYKENERFQYKCNMGYE 226
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 623 YKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGFTLTSNA 682
Y G V++ C GYK+EG+ C D G WS P+C+ + C +P+ + G ++
Sbjct: 152 YHFGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKEKPKCVEISCKSPDVI--NGSPISQKI 209
Query: 683 TYYGTAVL-YECDENYRLEGHARRLCLENGTWSSGLPTCK 721
Y Y+C+ Y +C E+G W LP+C+
Sbjct: 210 IYKENERFQYKCNMGYEYSERGDAVCTESG-WRP-LPSCE 247
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 63/171 (36%), Gaps = 32/171 (18%)
Query: 273 CQHNPANCGSPDRHVNTTFV--GTVSTKLGSTISYACPEGNMLVGSAT-RTCKEGFWTGV 329
CQ P CG P TF G + G Y C EG L+G R C WT
Sbjct: 64 CQKRP--CGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQLLGEINYRECDTDGWTND 121
Query: 330 APTCQYFQLQPMDVPNLVLYLFLSKLFRESYERLNVDCGKLEHIEHGTVTLETTRTTHGA 389
P C+ + P+ P E+ + + +E R H
Sbjct: 122 IPICEVVKCLPVTAP--------------------------ENGKIVSSAMEPDREYHFG 155
Query: 390 VAI-YACHENYTLIGETRRVCGDGGKWNGTEPQCLFDWCAEPPQISGGIVT 439
A+ + C+ Y + G+ C D G W+ +P+C+ C P I+G ++
Sbjct: 156 QAVRFVCNSGYKIEGDEEMHCSDDGFWSKEKPKCVEISCKSPDVINGSPIS 206
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 66/185 (35%), Gaps = 29/185 (15%)
Query: 387 HGAVAIYACHENYTLIGETRRVCGDGGKWNGTEP--QCLFDWCAEPPQISGGIVTTSGRR 444
G AIY C Y +G VC G +W P +C C P G T +G
Sbjct: 28 EGTQAIYKCRPGYRSLGNVIMVCRKG-EWVALNPLRKCQKRPCGHPGDTPFGTFTLTGGN 86
Query: 445 T---GSVATYSCEPGFILFGSNVN------------------IDCGRLTAIPYGSI---- 479
G A Y+C G+ L G +N + C +TA G I
Sbjct: 87 VFEYGVKAVYTCNEGYQLLGE-INYRECDTDGWTNDIPICEVVKCLPVTAPENGKIVSSA 145
Query: 480 SYLNETTYLGSEVLYSCSRNYRLVGHPRRSCLESKVWSDTAPKCEGKATKDIKVCSNVAV 539
+ + G V + C+ Y++ G C + WS PKC + K V + +
Sbjct: 146 MEPDREYHFGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKEKPKCVEISCKSPDVINGSPI 205
Query: 540 DRREI 544
++ I
Sbjct: 206 SQKII 210
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 78/187 (41%), Gaps = 24/187 (12%)
Query: 680 SNATY-YGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTCKGNEGHARRLCLENGTWS 738
S+ TY GT +Y+C YR G+ +C G W + P K +R C G
Sbjct: 22 SDQTYPEGTQAIYKCRPGYRSLGNVIMVC-RKGEWVALNPLRKCQ----KRPCGHPGDTP 76
Query: 739 SGLPTCKGCKTPKKSLTRPALSCLPGKRFYYHRGIFRLQNTQKVSYTRTCTKRGTWSGHI 798
G T G + + + +C G Q +++Y R C G W+ I
Sbjct: 77 FGTFTLTGGNVFEYGV-KAVYTCNEG-----------YQLLGEINY-RECDTDG-WTNDI 122
Query: 799 PTCKAIDCSHPGSIDNGRVIIM----NQTTTYNSAVEYHCVPQYQRIGPYLRKCMEDGSW 854
P C+ + C + +NG+++ ++ + AV + C Y+ G C +DG W
Sbjct: 123 PICEVVKCLPVTAPENGKIVSSAMEPDREYHFGQAVRFVCNSGYKIEGDEEMHCSDDGFW 182
Query: 855 SGDEPRC 861
S ++P+C
Sbjct: 183 SKEKPKC 189
>pdb|1C1Z|A Chain A, Crystal Structure Of Human Beta-2-Glycoprotein-I
(Apolipoprotein-H)
Length = 326
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 100/258 (38%), Gaps = 19/258 (7%)
Query: 468 CGRLTAIPYGSISYLNETTYLGSEVLYSCSRNYRLVGHPRRS-CLESKVWSDTAPKCEGK 526
C + +P+ ++ L G E+ YSC Y G R+ C + +W KC +
Sbjct: 4 CPKPDDLPFSTVVPLKTFYEPGEEITYSCKPGYVSRGGMRKFICPLTGLWPINTLKCTPR 63
Query: 527 ATKDIKVCSNVAVDRREIRCPEPTLPAHSILSVTGNDRLYGRTLIKTADSASSVATYKIG 586
+ N AV P + +S + N Y + ADSA K
Sbjct: 64 VCPFAGILENGAVRYTTFEYP-------NTISFSCNTGFY----LNGADSAKCTEEGKWS 112
Query: 587 ALPTLPAHSILSVTGNDRLYGRTLIKTADSASSVATYKIGALVKYRCERGYKVEGEPLST 646
P LP + + TL SA + + Y+ A+ + C + + G T
Sbjct: 113 --PELPVCAPIICPPPSIPTFATLRVYKPSAGNNSLYRDTAV--FECLPQHAMFGNDTIT 168
Query: 647 CEDTGSWSGSVPECIYVDCGNPETVPNGGFTLTSNAT-YYGTAVLYECDENYRLEGHARR 705
C G+W+ +PEC V C P NG + T YY + C + Y L+G
Sbjct: 169 CTTHGNWT-KLPECREVKCPFPSRPDNGFVNYPAKPTLYYKDKATFGCHDGYSLDGPEEI 227
Query: 706 LCLENGTWSSGLPTCKGN 723
C + G WS+ +P+CK +
Sbjct: 228 ECTKLGNWSA-MPSCKAS 244
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 93/265 (35%), Gaps = 32/265 (12%)
Query: 607 GRTLIKTADSASSVAT-----YKIGALVKYRCERGYKVEGEPLS-TCEDTGSWSGSVPEC 660
GRT K D S Y+ G + Y C+ GY G C TG W + +C
Sbjct: 1 GRTCPKPDDLPFSTVVPLKTFYEPGEEITYSCKPGYVSRGGMRKFICPLTGLWPINTLKC 60
Query: 661 IYVDCGNPETVPNGGFTLTSNATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTC 720
C + NG T+ Y + + C+ + L G C E G WS LP C
Sbjct: 61 TPRVCPFAGILENGAVRYTTFE--YPNTISFSCNTGFYLNGADSAKCTEEGKWSPELPVC 118
Query: 721 KGNEGHARRLCLENGTWSSGLPTCKGCKTPKKSLTR--PALSCLPGKRFYYHRGIFRLQN 778
+ T P+ SL R CLP Q+
Sbjct: 119 APIICPPPSI-PTFATLRVYKPSAGN-----NSLYRDTAVFECLP-------------QH 159
Query: 779 TQKVSYTRTCTKRGTWSGHIPTCKAIDCSHPGSIDNGRV-IIMNQTTTYNSAVEYHCVPQ 837
+ T TCT G W+ +P C+ + C P DNG V T Y + C
Sbjct: 160 AMFGNDTITCTTHGNWT-KLPECREVKCPFPSRPDNGFVNYPAKPTLYYKDKATFGCHDG 218
Query: 838 YQRIGPYLRKCMEDGSWSGDEPRCE 862
Y GP +C + G+WS P C+
Sbjct: 219 YSLDGPEEIECTKLGNWSA-MPSCK 242
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 63/175 (36%), Gaps = 31/175 (17%)
Query: 301 STISYACPEGNMLVGSATRTC-KEGFWTGVAPTCQYFQLQPMDVPNLVLYLFLSKLFRES 359
+TIS++C G L G+ + C +EG W+ P C P +P ++++ S
Sbjct: 85 NTISFSCNTGFYLNGADSAKCTEEGKWSPELPVCAPIICPPPSIPTFATL----RVYKPS 140
Query: 360 YERLNVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGTE 419
+ + A++ C + + G C G W
Sbjct: 141 ---------------------AGNNSLYRDTAVFECLPQHAMFGNDTITCTTHGNWTKL- 178
Query: 420 PQCLFDWCAEPPQISGGIVTTSGRRT---GSVATYSCEPGFILFGSNVNIDCGRL 471
P+C C P + G V + T AT+ C G+ L G I+C +L
Sbjct: 179 PECREVKCPFPSRPDNGFVNYPAKPTLYYKDKATFGCHDGYSLDGPE-EIECTKL 232
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 63/329 (19%), Positives = 108/329 (32%), Gaps = 59/329 (17%)
Query: 367 CGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRR-VCGDGGKWNGTEPQCLFD 425
C K + + TV T G Y+C Y G R+ +C G W +C
Sbjct: 4 CPKPDDLPFSTVVPLKTFYEPGEEITYSCKPGYVSRGGMRKFICPLTGLWPINTLKCTPR 63
Query: 426 WCAEPPQISGGIVTTSGRRTGSVATYSCEPGFILFGSNVNI------------DCGRLTA 473
C + G V + + ++SC GF L G++ C +
Sbjct: 64 VCPFAGILENGAVRYTTFEYPNTISFSCNTGFYLNGADSAKCTEEGKWSPELPVCAPIIC 123
Query: 474 IPYGSISYLNETTYLGSE---------VLYSCSRNYRLVGHPRRSCLESKVWSDTAPKCE 524
P ++ Y S ++ C + + G+ +C W+ P+C
Sbjct: 124 PPPSIPTFATLRVYKPSAGNNSLYRDTAVFECLPQHAMFGNDTITCTTHGNWTK-LPEC- 181
Query: 525 GKATKDIKVCSNVAVDRREIRCPEPTLPAHSILSVTGNDRLYGRTLIK-------TADSA 577
RE++CP P+ P + ++ LY + + D
Sbjct: 182 -----------------REVKCPFPSRPDNGFVNYPAKPTLYYKDKATFGCHDGYSLDGP 224
Query: 578 SSVATYKIG---ALPTLPAHSILSVTGNDRLYGRTLIKTADSASSVATYKIGALVKYRCE 634
+ K+G A+P+ A L V +Y +K + +K G L +
Sbjct: 225 EEIECTKLGNWSAMPSCKASCKLPVKKATVVYQGERVKIQEK------FKNGMLHGDKVS 278
Query: 635 RGYKVEGEPLSTCEDTGSWSGS--VPECI 661
K + + S ED G+ VP+C
Sbjct: 279 FFCKNKEKKCSYTEDAQCIDGTIEVPKCF 307
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 76/222 (34%), Gaps = 34/222 (15%)
Query: 665 CGNPETVPNGGFTLTSNATYY--GTAVLYECDENYRLEGHARR-LCLENGTWSSGLPTCK 721
C P+ +P T+ T+Y G + Y C Y G R+ +C G W C
Sbjct: 4 CPKPDDLPFS--TVVPLKTFYEPGEEITYSCKPGYVSRGGMRKFICPLTGLWPINTLKC- 60
Query: 722 GNEGHARRLCLENGTWSSGLPTCKGCKTPKKSLTRPALSCLPGKRFYYHRGIFRLQNTQK 781
R+C G +G + P + SC G +Y G
Sbjct: 61 -----TPRVCPFAGILENGAVRYTTFEYPNTI----SFSCNTG---FYLNG--------- 99
Query: 782 VSYTRTCTKRGTWSGHIPTCKAIDCSHPGSIDNGRVIIMNQT----TTYNSAVEYHCVPQ 837
+ + CT+ G WS +P C I C P + + + + Y + C+PQ
Sbjct: 100 -ADSAKCTEEGKWSPELPVCAPIICPPPSIPTFATLRVYKPSAGNNSLYRDTAVFECLPQ 158
Query: 838 YQRIGPYLRKCMEDGSWSGDEPRCEKRFNSGIPGRSRRSPIN 879
+ G C G+W+ P C + P R +N
Sbjct: 159 HAMFGNDTITCTTHGNWT-KLPEC-REVKCPFPSRPDNGFVN 198
>pdb|1QUB|A Chain A, Crystal Structure Of The Glycosylated Five-domain Human
Beta2- Glycoprotein I Purified From Blood Plasma
Length = 319
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 100/258 (38%), Gaps = 19/258 (7%)
Query: 468 CGRLTAIPYGSISYLNETTYLGSEVLYSCSRNYRLVGHPRRS-CLESKVWSDTAPKCEGK 526
C + +P+ ++ L G E+ YSC Y G R+ C + +W KC +
Sbjct: 4 CPKPDDLPFSTVVPLKTFYEPGEEITYSCKPGYVSRGGMRKFICPLTGLWPINTLKCTPR 63
Query: 527 ATKDIKVCSNVAVDRREIRCPEPTLPAHSILSVTGNDRLYGRTLIKTADSASSVATYKIG 586
+ N AV P + +S + N Y + ADSA K
Sbjct: 64 VCPFAGILENGAVRYTTFEYP-------NTISFSCNTGFY----LNGADSAKCTEEGKWS 112
Query: 587 ALPTLPAHSILSVTGNDRLYGRTLIKTADSASSVATYKIGALVKYRCERGYKVEGEPLST 646
P LP + + TL SA + + Y+ A+ + C + + G T
Sbjct: 113 --PELPVCAPIICPPPSIPTFATLRVYKPSAGNNSLYRDTAV--FECLPQHAMFGNDTIT 168
Query: 647 CEDTGSWSGSVPECIYVDCGNPETVPNGGFTLTSNAT-YYGTAVLYECDENYRLEGHARR 705
C G+W+ +PEC V C P NG + T YY + C + Y L+G
Sbjct: 169 CTTHGNWT-KLPECREVKCPFPSRPDNGFVNYPAKPTLYYKDKATFGCHDGYSLDGPEEI 227
Query: 706 LCLENGTWSSGLPTCKGN 723
C + G WS+ +P+CK +
Sbjct: 228 ECTKLGNWSA-MPSCKAS 244
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 93/265 (35%), Gaps = 32/265 (12%)
Query: 607 GRTLIKTADSASSVAT-----YKIGALVKYRCERGYKVEGEPLS-TCEDTGSWSGSVPEC 660
GRT K D S Y+ G + Y C+ GY G C TG W + +C
Sbjct: 1 GRTCPKPDDLPFSTVVPLKTFYEPGEEITYSCKPGYVSRGGMRKFICPLTGLWPINTLKC 60
Query: 661 IYVDCGNPETVPNGGFTLTSNATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTC 720
C + NG T+ Y + + C+ + L G C E G WS LP C
Sbjct: 61 TPRVCPFAGILENGAVRYTTFE--YPNTISFSCNTGFYLNGADSAKCTEEGKWSPELPVC 118
Query: 721 KGNEGHARRLCLENGTWSSGLPTCKGCKTPKKSLTR--PALSCLPGKRFYYHRGIFRLQN 778
+ T P+ SL R CLP Q+
Sbjct: 119 APIICPPPSI-PTFATLRVYKPSAGN-----NSLYRDTAVFECLP-------------QH 159
Query: 779 TQKVSYTRTCTKRGTWSGHIPTCKAIDCSHPGSIDNGRV-IIMNQTTTYNSAVEYHCVPQ 837
+ T TCT G W+ +P C+ + C P DNG V T Y + C
Sbjct: 160 AMFGNDTITCTTHGNWT-KLPECREVKCPFPSRPDNGFVNYPAKPTLYYKDKATFGCHDG 218
Query: 838 YQRIGPYLRKCMEDGSWSGDEPRCE 862
Y GP +C + G+WS P C+
Sbjct: 219 YSLDGPEEIECTKLGNWSA-MPSCK 242
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 63/175 (36%), Gaps = 31/175 (17%)
Query: 301 STISYACPEGNMLVGSATRTC-KEGFWTGVAPTCQYFQLQPMDVPNLVLYLFLSKLFRES 359
+TIS++C G L G+ + C +EG W+ P C P +P ++++ S
Sbjct: 85 NTISFSCNTGFYLNGADSAKCTEEGKWSPELPVCAPIICPPPSIPTFATL----RVYKPS 140
Query: 360 YERLNVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGTE 419
+ + A++ C + + G C G W
Sbjct: 141 ---------------------AGNNSLYRDTAVFECLPQHAMFGNDTITCTTHGNWTKL- 178
Query: 420 PQCLFDWCAEPPQISGGIVTTSGRRT---GSVATYSCEPGFILFGSNVNIDCGRL 471
P+C C P + G V + T AT+ C G+ L G I+C +L
Sbjct: 179 PECREVKCPFPSRPDNGFVNYPAKPTLYYKDKATFGCHDGYSLDGPE-EIECTKL 232
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 76/222 (34%), Gaps = 34/222 (15%)
Query: 665 CGNPETVPNGGFTLTSNATYY--GTAVLYECDENYRLEGHARR-LCLENGTWSSGLPTCK 721
C P+ +P T+ T+Y G + Y C Y G R+ +C G W C
Sbjct: 4 CPKPDDLPFS--TVVPLKTFYEPGEEITYSCKPGYVSRGGMRKFICPLTGLWPINTLKC- 60
Query: 722 GNEGHARRLCLENGTWSSGLPTCKGCKTPKKSLTRPALSCLPGKRFYYHRGIFRLQNTQK 781
R+C G +G + P + SC G +Y G
Sbjct: 61 -----TPRVCPFAGILENGAVRYTTFEYPNTI----SFSCNTG---FYLNG--------- 99
Query: 782 VSYTRTCTKRGTWSGHIPTCKAIDCSHPGSIDNGRVIIMNQT----TTYNSAVEYHCVPQ 837
+ + CT+ G WS +P C I C P + + + + Y + C+PQ
Sbjct: 100 -ADSAKCTEEGKWSPELPVCAPIICPPPSIPTFATLRVYKPSAGNNSLYRDTAVFECLPQ 158
Query: 838 YQRIGPYLRKCMEDGSWSGDEPRCEKRFNSGIPGRSRRSPIN 879
+ G C G+W+ P C + P R +N
Sbjct: 159 HAMFGNDTITCTTHGNWT-KLPEC-REVKCPFPSRPDNGFVN 198
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 1/98 (1%)
Query: 367 CGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRR-VCGDGGKWNGTEPQCLFD 425
C K + + TV T G Y+C Y G R+ +C G W +C
Sbjct: 4 CPKPDDLPFSTVVPLKTFYEPGEEITYSCKPGYVSRGGMRKFICPLTGLWPINTLKCTPR 63
Query: 426 WCAEPPQISGGIVTTSGRRTGSVATYSCEPGFILFGSN 463
C + G V + + ++SC GF L G++
Sbjct: 64 VCPFAGILENGAVRYTTFEYPNTISFSCNTGFYLNGAD 101
Score = 29.3 bits (64), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 66/194 (34%), Gaps = 28/194 (14%)
Query: 373 IEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCLFDWCAEPPQ 432
+E+G V T + ++C+ + L G C + GKW+ P C C P
Sbjct: 71 LENGAVRYTTFE--YPNTISFSCNTGFYLNGADSAKCTEEGKWSPELPVCAPIICPPPSI 128
Query: 433 ISGGIVTTSGRRTGS------VATYSCEPGFILFGSNVNIDC---GRLTAIPY------- 476
+ + G+ A + C P +FG N I C G T +P
Sbjct: 129 PTFATLRVYKPSAGNNSLYRDTAVFECLPQHAMFG-NDTITCTTHGNWTKLPECREVKCP 187
Query: 477 -------GSISY-LNETTYLGSEVLYSCSRNYRLVGHPRRSCLESKVWSDTAPKCEGKAT 528
G ++Y T Y + + C Y L G C + WS P C+
Sbjct: 188 FPSRPDNGFVNYPAKPTLYYKDKATFGCHDGYSLDGPEEIECTKLGNWS-AMPSCKASCK 246
Query: 529 KDIKVCSNVAVDRR 542
+K + V R
Sbjct: 247 VPVKKATVVYQGER 260
>pdb|1M11|R Chain R, Structural Model Of Human Decay-accelerating Factor Bound
To Echovirus 7 From Cryo-electron Microscopy
Length = 243
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 93/243 (38%), Gaps = 28/243 (11%)
Query: 622 TYKIGALVKYRCERGY-KVEGEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGFT--- 677
++ ++ Y+CE + K+ GE S GS + E C P + +
Sbjct: 20 SFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFCNRSCEVPTRLNSASLKQPY 79
Query: 678 LTSNATYYGTAVLYECDENYRLEGH--ARRLCLENGTWSSGLPTCKGNEGHARRLCLENG 735
+T N GT V YEC YR E + CL+N WS+ + CK ++ C G
Sbjct: 80 ITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWSTAVEFCK------KKSCPNPG 133
Query: 736 TWSSGLPTCKGCKTPKKSLTRPALSCLPGKRFYYHRGIFRLQNTQKVSYTRTCTKRGTWS 795
+G G ++ + SC G + + F L + V WS
Sbjct: 134 EIRNGQIDVPGGILFGATI---SFSCNTGYKLFGSTSSFCLISGSSVQ----------WS 180
Query: 796 GHIPTCKAIDCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCM---EDG 852
+P C+ I C P IDNG + Y +V Y C + IG + C ++G
Sbjct: 181 DPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEG 240
Query: 853 SWS 855
WS
Sbjct: 241 EWS 243
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 387 HGAVAIYACHENYTLIGETRRVC---GDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGR 443
GA ++C+ Y L G T C G +W+ P+C +C PPQI GI+
Sbjct: 148 FGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECREIYCPAPPQIDNGIIQGERD 207
Query: 444 RTG--SVATYSCEPGFILFGSN 463
G TY+C GF + G +
Sbjct: 208 HYGYRQSVTYACNKGFTMIGEH 229
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/269 (23%), Positives = 94/269 (34%), Gaps = 60/269 (22%)
Query: 366 DCGKLEHIEHGTVTLE-TTRTTHGAVAIYACHENYTLI-GETRRV-CGDGGKWNGTEPQC 422
DCG + + LE T V Y C E++ I GE V C G +W+ E C
Sbjct: 1 DCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFC 60
Query: 423 LFDWCAEPPQISGG-----IVTTSGRRTGSVATYSCEPGF---------------ILFGS 462
C P +++ +T + G+V Y C PG+ + + +
Sbjct: 61 NRS-CEVPTRLNSASLKQPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWST 119
Query: 463 NVNI----DCGRLTAIPYGSISYLNETTYLGSEVLYSCSRNYRLVGHPRRSCL---ESKV 515
V C I G I + G+ + +SC+ Y+L G CL S
Sbjct: 120 AVEFCKKKSCPNPGEIRNGQIDVPGGILF-GATISFSCNTGYKLFGSTSSFCLISGSSVQ 178
Query: 516 WSDTAPKCEGKATKDIKVCSNVAVDRREIRCPEPTLPAHSILSVTGNDRLYGRTLIKTAD 575
WSD P+C REI CP P + I+ + Y +++ +
Sbjct: 179 WSDPLPEC------------------REIYCPAPPQIDNGIIQGERDHYGYRQSVTYACN 220
Query: 576 SASSVATYKIGALPTLPAHSILSVTGNDR 604
++ IG HSI ND
Sbjct: 221 KGFTM----IG------EHSIYCTVNNDE 239
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 46/125 (36%), Gaps = 36/125 (28%)
Query: 299 LGSTISYACPEGNMLVGSATRTC----KEGFWTGVAPTCQYFQLQPMDVPNLVLYLFLSK 354
G+TIS++C G L GS + C W+ P C
Sbjct: 148 FGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPEC--------------------- 186
Query: 355 LFRESYERLNVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC---GD 411
RE Y C I++G + E + YAC++ +T+IGE C D
Sbjct: 187 --REIY------CPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNND 238
Query: 412 GGKWN 416
G+W+
Sbjct: 239 EGEWS 243
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 69/317 (21%), Positives = 101/317 (31%), Gaps = 104/317 (32%)
Query: 427 CAEPPQISGGIVTTSGRRT---GSVATYSCEPGFILFG--------------SNVNIDCG 469
C PP + GR + +V TY CE F+ S++ C
Sbjct: 2 CGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFCN 61
Query: 470 RLTAIP--YGSIS----YLNETTY-LGSEVLYSCSRNYRLVGH--PRRSCLESKVWSDTA 520
R +P S S Y+ + + +G+ V Y C YR P+ +CL++ WS
Sbjct: 62 RSCEVPTRLNSASLKQPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWSTAV 121
Query: 521 PKCEGKATKDIKVCSNVAVDRREIRCPEPTLPAHSILSVTGNDRLYGRTLIKTADSASSV 580
C+ K+ CP P + + V G L+G T+ S S
Sbjct: 122 EFCKKKS------------------CPNPGEIRNGQIDVPGG-ILFGATI-----SFSCN 157
Query: 581 ATYKIGALPTLPAHSILSVTGNDRLYGRTLIKTADSASSVATYKIGALVKYRCERGYKVE 640
YK L+G T S SSV
Sbjct: 158 TGYK--------------------LFGSTSSFCLISGSSV-------------------- 177
Query: 641 GEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGFTLTSNATYYGTAVLYECDENYRLE 700
WS +PEC + C P + NG + Y +V Y C++ + +
Sbjct: 178 -----------QWSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMI 226
Query: 701 GHARRLCLEN---GTWS 714
G C N G WS
Sbjct: 227 GEHSIYCTVNNDEGEWS 243
>pdb|3ERB|A Chain A, The Crystal Structure Of C2b, A Fragment Of Complement
Component C2 Produced During C3-Convertase Formation
Length = 223
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 47/106 (44%), Gaps = 8/106 (7%)
Query: 620 VATYKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGFTLT 679
+ +Y +G V + CE G+ + G P+ C G W G C D G PN G +L
Sbjct: 84 LGSYPVGGNVSFECEDGFILRGSPVRQCRPNGMWDGETAVC---DNGAGH-CPNPGISLG 139
Query: 680 SNATYY----GTAVLYECDENYRLEGHARRLCLENGTWSSGLPTCK 721
+ T + G V Y C N L G + R C NG WS P C+
Sbjct: 140 AVRTGFRFGHGDKVRYRCSSNLVLTGSSERECQGNGVWSGTEPICR 185
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 68/188 (36%), Gaps = 37/188 (19%)
Query: 626 GALVKYRCERG-YKVEGEPLSTCEDTGSW-------SGSVPECIYVDCGNPETVPNGGFT 677
G+L+ Y C +G Y L C+ +G W S S C V C P + NG +T
Sbjct: 24 GSLLTYSCPQGLYPSPASRL--CKSSGQWQTPGATRSLSKAVCKPVRCPAPVSFENGIYT 81
Query: 678 LTSNATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTCKGNEGHARRLCLENGTW 737
+ G V +EC++ + L G R C NG W C GH
Sbjct: 82 PRLGSYPVGGNVSFECEDGFILRGSPVRQCRPNGMWDGETAVCDNGAGH----------- 130
Query: 738 SSGLPTCKGCKTPKKSLTRPALSCLPGKRFYYHRGIFRLQNTQKV---SYTRTCTKRGTW 794
C P SL + G RF + + ++ V S R C G W
Sbjct: 131 ---------CPNPGISLG----AVRTGFRFGHGDKVRYRCSSNLVLTGSSERECQGNGVW 177
Query: 795 SGHIPTCK 802
SG P C+
Sbjct: 178 SGTEPICR 185
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 57/170 (33%), Gaps = 41/170 (24%)
Query: 259 WNDVGCKLDYLHWICQHNPANCGSPDRHVNTTFVGTV-STKLGSTISYACPEGNMLVGSA 317
W G +C+ P C +P N + + S +G +S+ C +G +L GS
Sbjct: 50 WQTPGATRSLSKAVCK--PVRCPAPVSFENGIYTPRLGSYPVGGNVSFECEDGFILRGSP 107
Query: 318 TRTCK-EGFWTGVAPTCQYFQLQPMDVPNLVLYLFLSKLFRESYERLNVDCGKLEHIEHG 376
R C+ G W G C H +
Sbjct: 108 VRQCRPNGMWDGETAVCD---------------------------------NGAGHCPNP 134
Query: 377 TVTLETTRT----THGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQC 422
++L RT HG Y C N L G + R C G W+GTEP C
Sbjct: 135 GISLGAVRTGFRFGHGDKVRYRCSSNLVLTGSSERECQGNGVWSGTEPIC 184
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 69/193 (35%), Gaps = 30/193 (15%)
Query: 366 DCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNG-------T 418
C + +I GT TL + G++ Y+C + R+C G+W +
Sbjct: 3 SCPQNVNISGGTFTL-SHGWAPGSLLTYSCPQGL-YPSPASRLCKSSGQWQTPGATRSLS 60
Query: 419 EPQCLFDWCAEPPQISGGIVTT--SGRRTGSVATYSCEPGFILFGSNVNIDC-------G 469
+ C C P GI T G ++ CE GFIL GS V C G
Sbjct: 61 KAVCKPVRCPAPVSFENGIYTPRLGSYPVGGNVSFECEDGFILRGSPVR-QCRPNGMWDG 119
Query: 470 RLTAIPYGSISYLNETTYLGS-----------EVLYSCSRNYRLVGHPRRSCLESKVWSD 518
G+ N LG+ +V Y CS N L G R C + VWS
Sbjct: 120 ETAVCDNGAGHCPNPGISLGAVRTGFRFGHGDKVRYRCSSNLVLTGSSERECQGNGVWSG 179
Query: 519 TAPKCEGKATKDI 531
T P C + D
Sbjct: 180 TEPICRQPYSYDF 192
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 59/160 (36%), Gaps = 22/160 (13%)
Query: 727 ARRLCLENGTWSSGLPT-------CKGCKTP-----KKSLTRPALSCLP--GKRFYYHRG 772
A RLC +G W + T CK + P + + P L P G +
Sbjct: 40 ASRLCKSSGQWQTPGATRSLSKAVCKPVRCPAPVSFENGIYTPRLGSYPVGGNVSFECED 99
Query: 773 IFRLQNTQKVSYTRTCTKRGTWSGHIPTCK--AIDCSHPGSIDNGRVIIMNQTTTYNSAV 830
F L+ S R C G W G C A C +PG I G V + + V
Sbjct: 100 GFILRG----SPVRQCRPNGMWDGETAVCDNGAGHCPNPG-ISLGAVRTGFRFG-HGDKV 153
Query: 831 EYHCVPQYQRIGPYLRKCMEDGSWSGDEPRCEKRFNSGIP 870
Y C G R+C +G WSG EP C + ++ P
Sbjct: 154 RYRCSSNLVLTGSSERECQGNGVWSGTEPICRQPYSYDFP 193
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 272 ICQHNPANCGSPDRHVNTTFVGTVSTKLGSTISYACPEGNMLVGSATRTCK-EGFWTGVA 330
+C + +C +P + G G + Y C +L GS+ R C+ G W+G
Sbjct: 123 VCDNGAGHCPNPGISLGAVRTG-FRFGHGDKVRYRCSSNLVLTGSSERECQGNGVWSGTE 181
Query: 331 PTCQ--YFQLQPMDV 343
P C+ Y P DV
Sbjct: 182 PICRQPYSYDFPEDV 196
>pdb|4IGD|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human
Masp-1
Length = 406
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 778 NTQKVSYTRTCTKRGTWSGHIPTCKAIDCSHPGSIDNGRVII--MNQTTTYNSAVEYHCV 835
N + ++ C K GTWS IPTCK +DC PG +++G + N TTY S ++Y C
Sbjct: 46 NVEMDTFQIECLKDGTWSNKIPTCKIVDCRAPGELEHGLITFSTRNNLTTYKSEIKYSCQ 105
Query: 836 PQYQRI 841
Y ++
Sbjct: 106 EPYYKM 111
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 16/118 (13%)
Query: 619 SVATYKIGALVKYRCERGYKVEGEPLST------CEDTGSWSGSVPECIYVDCGNPETVP 672
S A Y V C+ GYKV + + C G+WS +P C VDC P +
Sbjct: 22 SQAKYFFKDQVLVSCDTGYKVLKDNVEMDTFQIECLKDGTWSNKIPTCKIVDCRAPGELE 81
Query: 673 NGGFTLTS--NATYYGTAVLYECDE-NYRLEGHARRL--CLENGTWSS-----GLPTC 720
+G T ++ N T Y + + Y C E Y++ + + C G W + LPTC
Sbjct: 82 HGLITFSTRNNLTTYKSEIKYSCQEPYYKMLNNNTGIYTCSAQGVWMNKVLGRSLPTC 139
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 65/170 (38%), Gaps = 39/170 (22%)
Query: 668 PETVP--NGGFTLTSNATYYGTAVLYECDENYRLEGHARRL------CLENGTWSSGLPT 719
PE P +G + ++ VL CD Y++ + CL++GTWS+ +PT
Sbjct: 9 PELQPPVHGKIEPSQAKYFFKDQVLVSCDTGYKVLKDNVEMDTFQIECLKDGTWSNKIPT 68
Query: 720 CKGNEGHARRLCLENGTWSSGLPTCKGCKTPKKSLTRPALSCLPGK-RFYYHRGIFRLQN 778
CK + C G GL T TR L+ + ++ +++ N
Sbjct: 69 CKIVD------CRAPGELEHGLITFS---------TRNNLTTYKSEIKYSCQEPYYKMLN 113
Query: 779 TQKVSYTRTCTKRGTWSGHI-----PTCKAIDCSHP-------GSIDNGR 816
Y TC+ +G W + PTC + C P I NGR
Sbjct: 114 NNTGIY--TCSAQGVWMNKVLGRSLPTCLPV-CGLPKFSRKLMAQIFNGR 160
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 11/112 (9%)
Query: 366 DCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRV------CGDGGKWNGTE 419
+C +L+ HG + + + +C Y ++ + + C G W+
Sbjct: 7 ECPELQPPVHGKIEPSQAKYFFKDQVLVSCDTGYKVLKDNVEMDTFQIECLKDGTWSNKI 66
Query: 420 PQCLFDWCAEPPQISGGIVTTSGRRT----GSVATYSC-EPGFILFGSNVNI 466
P C C P ++ G++T S R S YSC EP + + +N I
Sbjct: 67 PTCKIVDCRAPGELEHGLITFSTRNNLTTYKSEIKYSCQEPYYKMLNNNTGI 118
>pdb|3GOV|A Chain A, Crystal Structure Of The Catalytic Region Of Human Masp-1
pdb|4DJZ|A Chain A, Catalytic Fragment Of Masp-1 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
pdb|4DJZ|C Chain C, Catalytic Fragment Of Masp-1 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
Length = 155
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 778 NTQKVSYTRTCTKRGTWSGHIPTCKAIDCSHPGSIDNGRVII--MNQTTTYNSAVEYHCV 835
N + ++ C K GTWS IPTCK +DC PG +++G + N TTY S ++Y C
Sbjct: 46 NVEMDTFQIECLKDGTWSNKIPTCKIVDCRAPGELEHGLITFSTRNNLTTYKSEIKYSCQ 105
Query: 836 PQYQRI 841
Y ++
Sbjct: 106 EPYYKM 111
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 16/118 (13%)
Query: 619 SVATYKIGALVKYRCERGYKVEGEPLST------CEDTGSWSGSVPECIYVDCGNPETVP 672
S A Y V C+ GYKV + + C G+WS +P C VDC P +
Sbjct: 22 SQAKYFFKDQVLVSCDTGYKVLKDNVEMDTFQIECLKDGTWSNKIPTCKIVDCRAPGELE 81
Query: 673 NGGFTLTS--NATYYGTAVLYECDE-NYRLEGHARRL--CLENGTWSS-----GLPTC 720
+G T ++ N T Y + + Y C E Y++ + + C G W + LPTC
Sbjct: 82 HGLITFSTRNNLTTYKSEIKYSCQEPYYKMLNNNTGIYTCSAQGVWMNKVLGRSLPTC 139
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 11/112 (9%)
Query: 366 DCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRV------CGDGGKWNGTE 419
+C +L+ HG + + + +C Y ++ + + C G W+
Sbjct: 7 ECPELQPPVHGKIEPSQAKYFFKDQVLVSCDTGYKVLKDNVEMDTFQIECLKDGTWSNKI 66
Query: 420 PQCLFDWCAEPPQISGGIVTTSGRRT----GSVATYSC-EPGFILFGSNVNI 466
P C C P ++ G++T S R S YSC EP + + +N I
Sbjct: 67 PTCKIVDCRAPGELEHGLITFSTRNNLTTYKSEIKYSCQEPYYKMLNNNTGI 118
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 668 PETVP--NGGFTLTSNATYYGTAVLYECDENYRLEGHARRL------CLENGTWSSGLPT 719
PE P +G + ++ VL CD Y++ + CL++GTWS+ +PT
Sbjct: 9 PELQPPVHGKIEPSQAKYFFKDQVLVSCDTGYKVLKDNVEMDTFQIECLKDGTWSNKIPT 68
Query: 720 CK 721
CK
Sbjct: 69 CK 70
>pdb|1NWV|A Chain A, Solution Structure Of A Functionally Active Component Of
Decay Accelerating Factor
pdb|2QZH|A Chain A, Scr23 OF DAF FROM THE NMR STRUCTURE 1NWV FITTED INTO A
Cryoem Reconstruction Of Cvb3-Rd Complexed With Daf
Length = 129
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Query: 623 YKIGALVKYRCERGYKVEGE--PLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGFTLTS 680
+ +G +V+Y C GY+ E P TC WS +V C C NP + NG +
Sbjct: 25 FPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWSTAVEFCKKKSCPNPGEIRNGQIDV-P 83
Query: 681 NATYYGTAVLYECDENYRLEGHARRLCLENGT---WSSGLPTCK 721
+G + + C+ Y+L G CL +G+ WS LP C+
Sbjct: 84 GGILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECR 127
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 787 TCTKRGTWSGHIPTCKAIDCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLR 846
TC + WS + CK C +PG I NG++ + + + + + C Y+ G
Sbjct: 50 TCLQNLKWSTAVEFCKKKSCPNPGEIRNGQIDVPG-GILFGATISFSCNTGYKLFGSTSS 108
Query: 847 KCMEDGS---WSGDEPRCEK 863
C+ GS WS P C +
Sbjct: 109 FCLISGSSVQWSDPLPECRE 128
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 678 LTSNATYYGTAVLYECDENYRLEG--HARRLCLENGTWSSGLPTCK 721
+T N GT V YEC YR E + CL+N WS+ + CK
Sbjct: 20 ITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWSTAVEFCK 65
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 388 GAVAIYACHENYTLIGET--RRVCGDGGKWNGTEPQCLFDWCAEPPQI-SGGIVTTSGRR 444
G V Y C Y + C KW+ C C P +I +G I G
Sbjct: 28 GTVVEYECRPGYRREPSLSPKLTCLQNLKWSTAVEFCKKKSCPNPGEIRNGQIDVPGGIL 87
Query: 445 TGSVATYSCEPGFILFGS 462
G+ ++SC G+ LFGS
Sbjct: 88 FGATISFSCNTGYKLFGS 105
>pdb|2RLQ|A Chain A, Nmr Structure Of Ccp Modules 2-3 Of Complement Factor H
Length = 129
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Query: 622 TYKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGFTLTSN 681
++ G Y C GY++ GE DT W+ +P C V C P T P G ++S
Sbjct: 26 VFEYGVKAVYTCNEGYQLLGEINYRECDTDGWTNDIPICEVVKC-LPVTAPENGKIVSSA 84
Query: 682 AT-----YYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTC 720
++G AV + C+ Y++EG C ++G WS P C
Sbjct: 85 MEPDREYHFGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKEKPKC 128
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 665 CGNPETVPNGGFTLTS-NATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTCK 721
CG+P P G FTLT N YG +Y C+E Y+L G + W++ +P C+
Sbjct: 8 CGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQLLGEINYRECDTDGWTNDIPICE 65
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 786 RTCTKRGTWSGHIPTCKAIDCSHPGSIDNGRVIIM----NQTTTYNSAVEYHCVPQYQRI 841
R C G W+ IP C+ + C + +NG+++ ++ + AV + C Y+
Sbjct: 50 RECDTDG-WTNDIPICEVVKCLPVTAPENGKIVSSAMEPDREYHFGQAVRFVCNSGYKIE 108
Query: 842 GPYLRKCMEDGSWSGDEPRC 861
G C +DG WS ++P+C
Sbjct: 109 GDEEMHCSDDGFWSKEKPKC 128
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 623 YKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECI 661
Y G V++ C GYK+EG+ C D G WS P+C+
Sbjct: 91 YHFGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKEKPKCV 129
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 54/148 (36%), Gaps = 30/148 (20%)
Query: 280 CGSPDRHVNTTFV--GTVSTKLGSTISYACPEGNMLVGSAT-RTCKEGFWTGVAPTCQYF 336
CG P TF G + G Y C EG L+G R C WT P C+
Sbjct: 8 CGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQLLGEINYRECDTDGWTNDIPICEVV 67
Query: 337 QLQPMDVPNLVLYLFLSKLFRESYERLNVDCGKLEHIEHGTVTLETTRTTHGAVAI-YAC 395
+ P+ P + GK+ + +E R H A+ + C
Sbjct: 68 KCLPVTAP---------------------ENGKIV-----SSAMEPDREYHFGQAVRFVC 101
Query: 396 HENYTLIGETRRVCGDGGKWNGTEPQCL 423
+ Y + G+ C D G W+ +P+C+
Sbjct: 102 NSGYKIEGDEEMHCSDDGFWSKEKPKCV 129
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 50/158 (31%), Gaps = 38/158 (24%)
Query: 367 CGKLEHIEHGTVTLETTRT-THGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCLFD 425
CG GT TL +G A+Y C+E Y L+GE D W P C
Sbjct: 8 CGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQLLGEINYRECDTDGWTNDIPICEVV 67
Query: 426 WCAEPPQISGGIVTTSGRRTGSVATYSCEPGFILFGSNVNIDCGRLTAIPYGSISYLNET 485
C + + G + + + EP +
Sbjct: 68 KC----------LPVTAPENGKIVSSAMEP---------------------------DRE 90
Query: 486 TYLGSEVLYSCSRNYRLVGHPRRSCLESKVWSDTAPKC 523
+ G V + C+ Y++ G C + WS PKC
Sbjct: 91 YHFGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKEKPKC 128
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 468 CGRLTAIPYGSISYLNETTY-LGSEVLYSCSRNYRLVGHPRRSCLESKVWSDTAPKCE 524
CG P+G+ + + G + +Y+C+ Y+L+G ++ W++ P CE
Sbjct: 8 CGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQLLGEINYRECDTDGWTNDIPICE 65
>pdb|1G40|A Chain A, Crystal Structure Of A Complement Protein That Regulates
Both Pathways Of Complement Activation And Binds Heparan
Sulfate Proteoglycans
pdb|1G40|B Chain B, Crystal Structure Of A Complement Protein That Regulates
Both Pathways Of Complement Activation And Binds Heparan
Sulfate Proteoglycans
pdb|1G44|A Chain A, Crystal Structure Of A Complement Control Protein That
Regulates Both Pathways Of Complement Activation And
Binds Heparan Sulfate Proteoglycans
pdb|1G44|B Chain B, Crystal Structure Of A Complement Control Protein That
Regulates Both Pathways Of Complement Activation And
Binds Heparan Sulfate Proteoglycans
pdb|1G44|C Chain C, Crystal Structure Of A Complement Control Protein That
Regulates Both Pathways Of Complement Activation And
Binds Heparan Sulfate Proteoglycans
pdb|1RID|A Chain A, Vaccinia Complement Protein In Complex With Heparin
pdb|1RID|B Chain B, Vaccinia Complement Protein In Complex With Heparin
pdb|1Y8E|A Chain A, Vcp:suramin Complex
pdb|1Y8E|B Chain B, Vcp:suramin Complex
Length = 244
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 96/274 (35%), Gaps = 63/274 (22%)
Query: 280 CGSPDRHVNTTFVGTVST------KLGSTISYACPEG--NMLVGSATRTCKEGFWTGVAP 331
C P R +N F +V T +G TI Y C G +G C WT
Sbjct: 2 CTIPSRPINMKFKNSVETDANANYNIGDTIEYLCLPGYRKQKMGPIYAKCTGTGWT---- 57
Query: 332 TCQYFQLQPMDVPNLVLYLFLSKLFRESYERLNVDCGKLEHIEHGTVTLETTRTTHGAVA 391
LF + +R C I++G L+ G+
Sbjct: 58 -----------------------LFNQCIKRR---CPSPRDIDNGQ--LDIGGVDFGSSI 89
Query: 392 IYACHENYTLIGETRRVCGDGGK----WNGTEPQCLFDWCAEPPQISGGIVT--TSGRRT 445
Y+C+ Y LIGE++ C G WN P C C PP IS G
Sbjct: 90 TYSCNSGYHLIGESKSYCELGSTGSMVWNPEAPICESVKCQSPPSISNGRHNGYEDFYTD 149
Query: 446 GSVATYSCEPGFILFGSNVNIDCG----------RLTAIPYGSIS--YLNE----TTYLG 489
GSV TYSC G+ L G N + C ++ P+ +IS YL+ +
Sbjct: 150 GSVVTYSCNSGYSLIG-NSGVLCSGGEWSDPPTCQIVKCPHPTISNGYLSSGFKRSYSYN 208
Query: 490 SEVLYSCSRNYRLVGHPRRSCLESKVWSDTAPKC 523
V + C Y+L G +C W PKC
Sbjct: 209 DNVDFKCKYGYKLSGSSSSTCSPGNTWKPELPKC 242
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 620 VATYKIGALVKYRCERGYKVEGEPLSTCE--DTGS--WSGSVPECIYVDCGNPETVPNGG 675
+ G+ + Y C GY + GE S CE TGS W+ P C V C +P ++ NG
Sbjct: 80 IGGVDFGSSITYSCNSGYHLIGESKSYCELGSTGSMVWNPEAPICESVKCQSPPSISNGR 139
Query: 676 FTLTSNATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTCK 721
+ G+ V Y C+ Y L G++ LC G WS PTC+
Sbjct: 140 HNGYEDFYTDGSVVTYSCNSGYSLIGNSGVLC-SGGEWSD-PPTCQ 183
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 102/258 (39%), Gaps = 35/258 (13%)
Query: 611 IKTADSASSVATYKIGALVKYRCERGYKVE--GEPLSTCEDTGSWSGSVPECIYVDCGNP 668
K + + A Y IG ++Y C GY+ + G + C TG W+ +CI C +P
Sbjct: 13 FKNSVETDANANYNIGDTIEYLCLPGYRKQKMGPIYAKCTGTG-WT-LFNQCIKRRCPSP 70
Query: 669 ETVPNGGFTLTSNATYYGTAVLYECDENYRLEGHARRLCLENGT----WSSGLPTCKGNE 724
+ NG L +G+++ Y C+ Y L G ++ C T W+ P C+ +
Sbjct: 71 RDIDNG--QLDIGGVDFGSSITYSCNSGYHLIGESKSYCELGSTGSMVWNPEAPICESVK 128
Query: 725 GHARRLCLENGTWSSGLPTCKGCKTPKKSLTRPALSCLPGKRFYYHRGIFRLQNTQKVSY 784
C + S+G G + + SC G + G+
Sbjct: 129 ------CQSPPSISNGRHN--GYEDFYTDGSVVTYSCNSGYSLIGNSGVL---------- 170
Query: 785 TRTCTKRGTWSGHIPTCKAIDCSHPGSIDNGRVII-MNQTTTYNSAVEYHCVPQYQRIGP 843
G WS PTC+ + C HP +I NG + ++ +YN V++ C Y+ G
Sbjct: 171 ----CSGGEWS-DPPTCQIVKCPHP-TISNGYLSSGFKRSYSYNDNVDFKCKYGYKLSGS 224
Query: 844 YLRKCMEDGSWSGDEPRC 861
C +W + P+C
Sbjct: 225 SSSTCSPGNTWKPELPKC 242
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 793 TWSGHIPTCKAIDCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCMEDG 852
W+ P C+++ C P SI NGR T S V Y C Y IG C G
Sbjct: 116 VWNPEAPICESVKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIGNSGVLC-SGG 174
Query: 853 SWSGDEPRCE 862
WS D P C+
Sbjct: 175 EWS-DPPTCQ 183
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 55/152 (36%), Gaps = 41/152 (26%)
Query: 421 QCLFDWCAEPPQISGGIVTTSGRRTGSVATYSCEPGFILFGSNV---------------- 464
QC+ C P I G + G GS TYSC G+ L G +
Sbjct: 61 QCIKRRCPSPRDIDNGQLDIGGVDFGSSITYSCNSGYHLIGESKSYCELGSTGSMVWNPE 120
Query: 465 -----NIDCGRLTAIPYGSISYLNETTYLGSEVLYSCSRNYRLVGHPRRSCLESKVWSDT 519
++ C +I G + + GS V YSC+ Y L+G+ C + WSD
Sbjct: 121 APICESVKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIGNSGVLCSGGE-WSD- 178
Query: 520 APKCEGKATKDIKVCSNVAVDRREIRCPEPTL 551
P C+ ++CP PT+
Sbjct: 179 PPTCQ------------------IVKCPHPTI 192
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 72/188 (38%), Gaps = 43/188 (22%)
Query: 488 LGSEVLYSCSRNYRLVGHPRRSC----LESKVWSDTAPKCEGKATKDIKVCSNVAVDRRE 543
GS + YSC+ Y L+G + C S VW+ AP CE
Sbjct: 85 FGSSITYSCNSGYHLIGESKSYCELGSTGSMVWNPEAPICE------------------S 126
Query: 544 IRCPEPTLPAHSILSVTGNDRLYGRTLIKTADSASSVATYKIGALPTLPAHSILSVTGND 603
++C P P+ S G + Y + SV TY + +L +S + +G +
Sbjct: 127 VKCQSP--PSISNGRHNGYEDFY---------TDGSVVTYSCNSGYSLIGNSGVLCSGGE 175
Query: 604 ----------RLYGRTLIKTADSASSVATYKIGALVKYRCERGYKVEGEPLSTCEDTGSW 653
+ T+ S+ +Y V ++C+ GYK+ G STC +W
Sbjct: 176 WSDPPTCQIVKCPHPTISNGYLSSGFKRSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTW 235
Query: 654 SGSVPECI 661
+P+C+
Sbjct: 236 KPELPKCV 243
>pdb|2RLP|A Chain A, Nmr Structure Of Ccp Modules 1-2 Of Complement Factor H
Length = 129
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 619 SVATYKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVP--ECIYVDCGNPETVPNGGF 676
S TY G Y+C GY+ G + C G W P +C CG+P P G F
Sbjct: 25 SDQTYPEGTQAIYKCRPGYRSLGNVIMVCRK-GEWVALNPLRKCQKRPCGHPGDTPFGTF 83
Query: 677 TLTS-NATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTCK 721
TLT N YG +Y C+E Y+L G + W++ +P C+
Sbjct: 84 TLTGGNVFEYGVKAVYTCNEGYQLLGEINYRECDTDGWTNDIPICE 129
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 19/98 (19%)
Query: 446 GSVATYSCEPGFILFGSNVNI------------------DCGRLTAIPYGSISYLNETTY 487
G+ A Y C PG+ G+ + + CG P+G+ + +
Sbjct: 32 GTQAIYKCRPGYRSLGNVIMVCRKGEWVALNPLRKCQKRPCGHPGDTPFGTFTLTGGNVF 91
Query: 488 -LGSEVLYSCSRNYRLVGHPRRSCLESKVWSDTAPKCE 524
G + +Y+C+ Y+L+G ++ W++ P CE
Sbjct: 92 EYGVKAVYTCNEGYQLLGEINYRECDTDGWTNDIPICE 129
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 48/144 (33%), Gaps = 31/144 (21%)
Query: 283 PDRHVNTTFVGTVSTKL---GSTISYACPEGNMLVGSATRTCKEGFWTGVAPTCQYFQLQ 339
P R G+ S + G+ Y C G +G+ C++G W + P
Sbjct: 12 PPRRNTEILTGSWSDQTYPEGTQAIYKCRPGYRSLGNVIMVCRKGEWVALNP-------- 63
Query: 340 PMDVPNLVLYLFLSKLFRESYERLNVDCGKLEHIEHGTVTLETTRT-THGAVAIYACHEN 398
R+ +R CG GT TL +G A+Y C+E
Sbjct: 64 ----------------LRKCQKR---PCGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEG 104
Query: 399 YTLIGETRRVCGDGGKWNGTEPQC 422
Y L+GE D W P C
Sbjct: 105 YQLLGEINYRECDTDGWTNDIPIC 128
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 790 KRGTWSGHIP--TCKAIDCSHPGSIDNGRVIIMN-QTTTYNSAVEYHCVPQYQRIGPY-L 845
++G W P C+ C HPG G + Y Y C YQ +G
Sbjct: 54 RKGEWVALNPLRKCQKRPCGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQLLGEINY 113
Query: 846 RKCMEDGSWSGDEPRCE 862
R+C DG W+ D P CE
Sbjct: 114 RECDTDG-WTNDIPICE 129
>pdb|1H04|P Chain P, Human Cd55 Domains 3 & 4
Length = 125
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 625 IGALVKYRCERGYKVEGEPLSTCEDTGS---WSGSVPECIYVDCGNPETVPNGGFTLTSN 681
GA + + C GYK+ G S C +GS WS +PEC + C P + NG +
Sbjct: 22 FGATISFSCNTGYKLAGSTSSFCLISGSSVQWSDPLPECREIYCPAPPQIDNGIIQGERD 81
Query: 682 ATYYGTAVLYECDENYRLEGHARRLCLEN---GTWSSGLPTCKG 722
Y +V Y C++ + + G C N G WS P C+G
Sbjct: 82 HYGYRQSVTYACNKGFTMIGEHSIYCTVNNDAGEWSGPPPECRG 125
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 388 GAVAIYACHENYTLIGETRRVC---GDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRR 444
GA ++C+ Y L G T C G +W+ P+C +C PPQI GI+
Sbjct: 23 GATISFSCNTGYKLAGSTSSFCLISGSSVQWSDPLPECREIYCPAPPQIDNGIIQGERDH 82
Query: 445 TG--SVATYSCEPGFILFGSN-----VNIDCGRLTAIP 475
G TY+C GF + G + VN D G + P
Sbjct: 83 YGYRQSVTYACNKGFTMIGEHSIYCTVNNDAGEWSGPP 120
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 794 WSGHIPTCKAIDCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCM---E 850
WS +P C+ I C P IDNG + Y +V Y C + IG + C +
Sbjct: 53 WSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNND 112
Query: 851 DGSWSGDEPRC 861
G WSG P C
Sbjct: 113 AGEWSGPPPEC 123
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 50/131 (38%), Gaps = 36/131 (27%)
Query: 299 LGSTISYACPEGNMLVGSATRTC----KEGFWTGVAPTCQYFQLQPMDVPNLVLYLFLSK 354
G+TIS++C G L GS + C W+ P C
Sbjct: 22 FGATISFSCNTGYKLAGSTSSFCLISGSSVQWSDPLPEC--------------------- 60
Query: 355 LFRESYERLNVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC---GD 411
RE Y C I++G + E + YAC++ +T+IGE C D
Sbjct: 61 --REIY------CPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNND 112
Query: 412 GGKWNGTEPQC 422
G+W+G P+C
Sbjct: 113 AGEWSGPPPEC 123
Score = 37.0 bits (84), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 665 CGNPETVPNGGFTLTSNATYYGTAVLYECDENYRLEGHARRLCLENGT---WSSGLPTCK 721
C NP + NG + +G + + C+ Y+L G CL +G+ WS LP C+
Sbjct: 3 CPNPGAIANGQIDVP-GGILFGATISFSCNTGYKLAGSTSSFCLISGSSVQWSDPLPECR 61
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 21/73 (28%)
Query: 488 LGSEVLYSCSRNYRLVGHPRRSCL---ESKVWSDTAPKCEGKATKDIKVCSNVAVDRREI 544
G+ + +SC+ Y+L G CL S WSD P+C REI
Sbjct: 22 FGATISFSCNTGYKLAGSTSSFCLISGSSVQWSDPLPEC------------------REI 63
Query: 545 RCPEPTLPAHSIL 557
CP P + I+
Sbjct: 64 YCPAPPQIDNGII 76
>pdb|1H2P|P Chain P, Human Cd55 Domains 3 & 4
Length = 125
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 625 IGALVKYRCERGYKVEGEPLSTCEDTGS---WSGSVPECIYVDCGNPETVPNGGFTLTSN 681
GA + + C GYK+ G S C +GS WS +PEC + C P + NG +
Sbjct: 22 FGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECREIYCPAPPQIDNGIIQGERD 81
Query: 682 ATYYGTAVLYECDENYRLEGHARRLCLEN---GTWSSGLPTCKG 722
Y +V Y C++ + + G C N G WS P C+G
Sbjct: 82 HYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPPPECRG 125
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 388 GAVAIYACHENYTLIGETRRVC---GDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRR 444
GA ++C+ Y L G T C G +W+ P+C +C PPQI GI+
Sbjct: 23 GATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECREIYCPAPPQIDNGIIQGERDH 82
Query: 445 TG--SVATYSCEPGFILFGSN-----VNIDCGRLTAIP 475
G TY+C GF + G + VN D G + P
Sbjct: 83 YGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPP 120
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 794 WSGHIPTCKAIDCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCM---E 850
WS +P C+ I C P IDNG + Y +V Y C + IG + C +
Sbjct: 53 WSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNND 112
Query: 851 DGSWSGDEPRC 861
+G WSG P C
Sbjct: 113 EGEWSGPPPEC 123
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 50/131 (38%), Gaps = 36/131 (27%)
Query: 299 LGSTISYACPEGNMLVGSATRTC----KEGFWTGVAPTCQYFQLQPMDVPNLVLYLFLSK 354
G+TIS++C G L GS + C W+ P C
Sbjct: 22 FGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPEC--------------------- 60
Query: 355 LFRESYERLNVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC---GD 411
RE Y C I++G + E + YAC++ +T+IGE C D
Sbjct: 61 --REIY------CPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNND 112
Query: 412 GGKWNGTEPQC 422
G+W+G P+C
Sbjct: 113 EGEWSGPPPEC 123
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 665 CGNPETVPNGGFTLTSNATYYGTAVLYECDENYRLEGHARRLCLENGT---WSSGLPTCK 721
C NP + NG + +G + + C+ Y+L G CL +G+ WS LP C+
Sbjct: 3 CPNPGQIRNGQIDVPG-GILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECR 61
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 45/123 (36%), Gaps = 24/123 (19%)
Query: 427 CAEPPQI-SGGIVTTSGRRTGSVATYSCEPGFILFGSNVN-------------------- 465
C P QI +G I G G+ ++SC G+ LFGS +
Sbjct: 3 CPNPGQIRNGQIDVPGGILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECRE 62
Query: 466 IDCGRLTAIPYGSISYLNETTYLGSEVLYSCSRNYRLVGHPRRSCL---ESKVWSDTAPK 522
I C I G I + V Y+C++ + ++G C + WS P+
Sbjct: 63 IYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPPPE 122
Query: 523 CEG 525
C G
Sbjct: 123 CRG 125
>pdb|2OK5|A Chain A, Human Complement Factor B
Length = 752
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 68/186 (36%), Gaps = 30/186 (16%)
Query: 626 GALVKYRCERGYKVEGEPLSTCEDTGSWSG---------SVPECIYVDCGNPETVPNGGF 676
G ++Y C G+ TC TGSWS EC + C P NG +
Sbjct: 40 GQALEYVCPSGFYPYPVQTRTCRSTGSWSTLKTQDQKTVRKAECRAIHCPRPHDFENGEY 99
Query: 677 TLTSNATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTCKGNEGHARRLCLENGT 736
S + + C + Y L G A R C NG WS C G+ + GT
Sbjct: 100 WPRSPYYNVSDEISFHCYDGYTLRGSANRTCQVNGRWSGQTAICDNGAGYCSNPGIPIGT 159
Query: 737 WSSGLPTCKGCKTPKKSLTRPALSCLPGKRFYYHRGIFRLQNTQKVSYTRTCTKRGTWSG 796
G S R S ++ RG+ T + S RTC + G+WSG
Sbjct: 160 RKVG------------SQYRLEDSVT----YHCSRGL-----TLRGSQRRTCQEGGSWSG 198
Query: 797 HIPTCK 802
P+C+
Sbjct: 199 TEPSCQ 204
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Query: 779 TQKVSYTRTCTKRGTWSGHIPTCK--AIDCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVP 836
T + S RTC G WSG C A CS+PG I G + +Q +S V YHC
Sbjct: 121 TLRGSANRTCQVNGRWSGQTAICDNGAGYCSNPG-IPIGTRKVGSQYRLEDS-VTYHCSR 178
Query: 837 QYQRIGPYLRKCMEDGSWSGDEPRCEKRFNSGIPGRSRRSPINSF 881
G R C E GSWSG EP C+ F P + ++S
Sbjct: 179 GLTLRGSQRRTCQEGGSWSGTEPSCQDSFMYDTPQEVAEAFLSSL 223
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Query: 623 YKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECIYVD--CGNPETVPNGGFTLTS 680
Y + + + C GY + G TC+ G WSG C C NP +P G + S
Sbjct: 106 YNVSDEISFHCYDGYTLRGSANRTCQVNGRWSGQTAICDNGAGYCSNP-GIPIGTRKVGS 164
Query: 681 NATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTCK 721
+V Y C L G RR C E G+WS P+C+
Sbjct: 165 QYR-LEDSVTYHCSRGLTLRGSQRRTCQEGGSWSGTEPSCQ 204
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 272 ICQHNPANCGSPDRHVNTTFVGTVSTKLGSTISYACPEGNMLVGSATRTCKE-GFWTGVA 330
IC + C +P + T VG+ +L +++Y C G L GS RTC+E G W+G
Sbjct: 142 ICDNGAGYCSNPGIPIGTRKVGS-QYRLEDSVTYHCSRGLTLRGSQRRTCQEGGSWSGTE 200
Query: 331 PTCQYFQLQPMDVPNLVLYLFLSKLFRESYERLNVDCG 368
P+CQ + D P V FLS L E+ E ++ + G
Sbjct: 201 PSCQDSFM--YDTPQEVAEAFLSSL-TETIEGVDAEDG 235
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 57/150 (38%), Gaps = 29/150 (19%)
Query: 753 SLTRPALSC-LPGKRFYYHRGIFRL-QNTQKVSY------------TRTCTKRGTWSG-- 796
SL RP SC L G G FRL Q Q + Y TRTC G+WS
Sbjct: 14 SLARPQGSCSLEGVEI--KGGSFRLLQEGQALEYVCPSGFYPYPVQTRTCRSTGSWSTLK 71
Query: 797 -------HIPTCKAIDCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCM 849
C+AI C P +NG + + + +HC Y G R C
Sbjct: 72 TQDQKTVRKAECRAIHCPRPHDFENGEYWPRSPYYNVSDEISFHCYDGYTLRGSANRTCQ 131
Query: 850 EDGSWSGDEPRCEKRF----NSGIPGRSRR 875
+G WSG C+ N GIP +R+
Sbjct: 132 VNGRWSGQTAICDNGAGYCSNPGIPIGTRK 161
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 74/232 (31%), Gaps = 62/232 (26%)
Query: 300 GSTISYACPEGNMLVGSATRTCKE-GFWTGVAPTCQYFQLQPMDVPNLVLYLFLSKLFRE 358
G + Y CP G TRTC+ G W+ + Q K R+
Sbjct: 40 GQALEYVCPSGFYPYPVQTRTCRSTGSWSTLKTQDQ-------------------KTVRK 80
Query: 359 SYERLNVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGT 418
+ R + C + E+G + + C++ YTL G R C G+W+G
Sbjct: 81 AECRA-IHCPRPHDFENGEYWPRSPYYNVSDEISFHCYDGYTLRGSANRTCQVNGRWSGQ 139
Query: 419 EPQCLFDWCAEPPQISGGIVTTSGRRTGSVATYSCEPGFILFGSNVNIDCGRLTAIPYGS 478
C + A Y PG IP G+
Sbjct: 140 TAIC-----------------------DNGAGYCSNPG-----------------IPIGT 159
Query: 479 ISYLNETTYLGSEVLYSCSRNYRLVGHPRRSCLESKVWSDTAPKCEGKATKD 530
+ L V Y CSR L G RR+C E WS T P C+ D
Sbjct: 160 -RKVGSQYRLEDSVTYHCSRGLTLRGSQRRTCQEGGSWSGTEPSCQDSFMYD 210
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 52/135 (38%), Gaps = 30/135 (22%)
Query: 299 LGSTISYACPEGNMLVGSATRTCK-EGFWTGVAPTCQYFQLQPMDVPNLVLYLFLSKLFR 357
+ IS+ C +G L GSA RTC+ G W+G C N Y
Sbjct: 108 VSDEISFHCYDGYTLRGSANRTCQVNGRWSGQTAICD----------NGAGY-------- 149
Query: 358 ESYERLNVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNG 417
C I GT + + +V Y C TL G RR C +GG W+G
Sbjct: 150 ---------CSN-PGIPIGTRKVGSQYRLEDSVT-YHCSRGLTLRGSQRRTCQEGGSWSG 198
Query: 418 TEPQCLFDWCAEPPQ 432
TEP C + + PQ
Sbjct: 199 TEPSCQDSFMYDTPQ 213
>pdb|1UPN|E Chain E, Complex Of Echovirus Type 12 With Domains 3 And 4 Of Its
Receptor Decay Accelerating Factor (Cd55) By Cryo
Electron Microscopy At 16 A
Length = 129
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 625 IGALVKYRCERGYKVEGEPLSTCEDTGS---WSGSVPECIYVDCGNPETVPNGGFTLTSN 681
GA + + C GYK+ G S C +GS WS +PEC + C P + NG +
Sbjct: 26 FGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECREIYCPAPPQIDNGIIQGERD 85
Query: 682 ATYYGTAVLYECDENYRLEGHARRLCLEN---GTWSSGLPTCKG 722
Y +V Y C++ + + G C N G WS P C+G
Sbjct: 86 HYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPPPECRG 129
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 388 GAVAIYACHENYTLIGETRRVC---GDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRR 444
GA ++C+ Y L G T C G +W+ P+C +C PPQI GI+
Sbjct: 27 GATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECREIYCPAPPQIDNGIIQGERDH 86
Query: 445 TG--SVATYSCEPGFILFGSN-----VNIDCGRLTAIP 475
G TY+C GF + G + VN D G + P
Sbjct: 87 YGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPP 124
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 794 WSGHIPTCKAIDCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCM---E 850
WS +P C+ I C P IDNG + Y +V Y C + IG + C +
Sbjct: 57 WSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNND 116
Query: 851 DGSWSGDEPRC 861
+G WSG P C
Sbjct: 117 EGEWSGPPPEC 127
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 50/131 (38%), Gaps = 36/131 (27%)
Query: 299 LGSTISYACPEGNMLVGSATRTC----KEGFWTGVAPTCQYFQLQPMDVPNLVLYLFLSK 354
G+TIS++C G L GS + C W+ P C
Sbjct: 26 FGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPEC--------------------- 64
Query: 355 LFRESYERLNVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC---GD 411
RE Y C I++G + E + YAC++ +T+IGE C D
Sbjct: 65 --REIY------CPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNND 116
Query: 412 GGKWNGTEPQC 422
G+W+G P+C
Sbjct: 117 EGEWSGPPPEC 127
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 660 CIYVDCGNPETVPNGGFTLTSNATYYGTAVLYECDENYRLEGHARRLCLENGT---WSSG 716
C C NP + NG + +G + + C+ Y+L G CL +G+ WS
Sbjct: 2 CKKKSCPNPGEIRNGQIDVPG-GILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDP 60
Query: 717 LPTCK 721
LP C+
Sbjct: 61 LPECR 65
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 801 CKAIDCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCMEDGS---WSGD 857
CK C +PG I NG++ + + + + + C Y+ G C+ GS WS
Sbjct: 2 CKKKSCPNPGEIRNGQIDVPG-GILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDP 60
Query: 858 EPRCEKRFNSGIP 870
P C + + P
Sbjct: 61 LPECREIYCPAPP 73
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 45/123 (36%), Gaps = 24/123 (19%)
Query: 427 CAEPPQI-SGGIVTTSGRRTGSVATYSCEPGFILFGSNVN-------------------- 465
C P +I +G I G G+ ++SC G+ LFGS +
Sbjct: 7 CPNPGEIRNGQIDVPGGILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECRE 66
Query: 466 IDCGRLTAIPYGSISYLNETTYLGSEVLYSCSRNYRLVGHPRRSCL---ESKVWSDTAPK 522
I C I G I + V Y+C++ + ++G C + WS P+
Sbjct: 67 IYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPPPE 126
Query: 523 CEG 525
C G
Sbjct: 127 CRG 129
>pdb|2XWB|F Chain F, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|H Chain H, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 732
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 68/186 (36%), Gaps = 30/186 (16%)
Query: 626 GALVKYRCERGYKVEGEPLSTCEDTGSWSG---------SVPECIYVDCGNPETVPNGGF 676
G ++Y C G+ TC TGSWS EC + C P NG +
Sbjct: 21 GQALEYVCPSGFYPYPVQTRTCRSTGSWSTLKTQDQKTVRKAECRAIHCPRPHDFENGEY 80
Query: 677 TLTSNATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTCKGNEGHARRLCLENGT 736
S + + C + Y L G A R C NG WS C G+ + GT
Sbjct: 81 WPRSPYYNVSDEISFHCYDGYTLRGSANRTCQVNGRWSGQTAICDNGAGYCSNPGIPIGT 140
Query: 737 WSSGLPTCKGCKTPKKSLTRPALSCLPGKRFYYHRGIFRLQNTQKVSYTRTCTKRGTWSG 796
G S R S ++ RG+ T + S RTC + G+WSG
Sbjct: 141 RKVG------------SQYRLEDSVT----YHCSRGL-----TLRGSQRRTCQEGGSWSG 179
Query: 797 HIPTCK 802
P+C+
Sbjct: 180 TEPSCQ 185
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Query: 779 TQKVSYTRTCTKRGTWSGHIPTCK--AIDCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVP 836
T + S RTC G WSG C A CS+PG I G + +Q +S V YHC
Sbjct: 102 TLRGSANRTCQVNGRWSGQTAICDNGAGYCSNPG-IPIGTRKVGSQYRLEDS-VTYHCSR 159
Query: 837 QYQRIGPYLRKCMEDGSWSGDEPRCEKRFNSGIPGRSRRSPINSF 881
G R C E GSWSG EP C+ F P + ++S
Sbjct: 160 GLTLRGSQRRTCQEGGSWSGTEPSCQDSFMYDTPQEVAEAFLSSL 204
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Query: 623 YKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECIYVD--CGNPETVPNGGFTLTS 680
Y + + + C GY + G TC+ G WSG C C NP +P G + S
Sbjct: 87 YNVSDEISFHCYDGYTLRGSANRTCQVNGRWSGQTAICDNGAGYCSNP-GIPIGTRKVGS 145
Query: 681 NATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTCK 721
+V Y C L G RR C E G+WS P+C+
Sbjct: 146 QYR-LEDSVTYHCSRGLTLRGSQRRTCQEGGSWSGTEPSCQ 185
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 272 ICQHNPANCGSPDRHVNTTFVGTVSTKLGSTISYACPEGNMLVGSATRTCKE-GFWTGVA 330
IC + C +P + T VG+ +L +++Y C G L GS RTC+E G W+G
Sbjct: 123 ICDNGAGYCSNPGIPIGTRKVGS-QYRLEDSVTYHCSRGLTLRGSQRRTCQEGGSWSGTE 181
Query: 331 PTCQYFQLQPMDVPNLVLYLFLSKLFRESYERLNVDCG 368
P+CQ + D P V FLS L E+ E ++ + G
Sbjct: 182 PSCQDSFM--YDTPQEVAEAFLSSL-TETIEGVDAEDG 216
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 74/232 (31%), Gaps = 62/232 (26%)
Query: 300 GSTISYACPEGNMLVGSATRTCKE-GFWTGVAPTCQYFQLQPMDVPNLVLYLFLSKLFRE 358
G + Y CP G TRTC+ G W+ + Q K R+
Sbjct: 21 GQALEYVCPSGFYPYPVQTRTCRSTGSWSTLKTQDQ-------------------KTVRK 61
Query: 359 SYERLNVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGT 418
+ R + C + E+G + + C++ YTL G R C G+W+G
Sbjct: 62 AECRA-IHCPRPHDFENGEYWPRSPYYNVSDEISFHCYDGYTLRGSANRTCQVNGRWSGQ 120
Query: 419 EPQCLFDWCAEPPQISGGIVTTSGRRTGSVATYSCEPGFILFGSNVNIDCGRLTAIPYGS 478
C + A Y PG IP G+
Sbjct: 121 TAIC-----------------------DNGAGYCSNPG-----------------IPIGT 140
Query: 479 ISYLNETTYLGSEVLYSCSRNYRLVGHPRRSCLESKVWSDTAPKCEGKATKD 530
+ L V Y CSR L G RR+C E WS T P C+ D
Sbjct: 141 -RKVGSQYRLEDSVTYHCSRGLTLRGSQRRTCQEGGSWSGTEPSCQDSFMYD 191
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 52/135 (38%), Gaps = 30/135 (22%)
Query: 299 LGSTISYACPEGNMLVGSATRTCK-EGFWTGVAPTCQYFQLQPMDVPNLVLYLFLSKLFR 357
+ IS+ C +G L GSA RTC+ G W+G C N Y
Sbjct: 89 VSDEISFHCYDGYTLRGSANRTCQVNGRWSGQTAICD----------NGAGY-------- 130
Query: 358 ESYERLNVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNG 417
C I GT + + +V Y C TL G RR C +GG W+G
Sbjct: 131 ---------CSN-PGIPIGTRKVGSQYRLEDSVT-YHCSRGLTLRGSQRRTCQEGGSWSG 179
Query: 418 TEPQCLFDWCAEPPQ 432
TEP C + + PQ
Sbjct: 180 TEPSCQDSFMYDTPQ 194
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 49/130 (37%), Gaps = 26/130 (20%)
Query: 772 GIFRL-QNTQKVSY------------TRTCTKRGTWSG---------HIPTCKAIDCSHP 809
G FRL Q Q + Y TRTC G+WS C+AI C P
Sbjct: 13 GSFRLLQEGQALEYVCPSGFYPYPVQTRTCRSTGSWSTLKTQDQKTVRKAECRAIHCPRP 72
Query: 810 GSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCMEDGSWSGDEPRCEKRF---- 865
+NG + + + +HC Y G R C +G WSG C+
Sbjct: 73 HDFENGEYWPRSPYYNVSDEISFHCYDGYTLRGSANRTCQVNGRWSGQTAICDNGAGYCS 132
Query: 866 NSGIPGRSRR 875
N GIP +R+
Sbjct: 133 NPGIPIGTRK 142
>pdb|3HRZ|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|I Chain I, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|2XWJ|I Chain I, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|J Chain J, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|K Chain K, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|L Chain L, Crystal Structure Of Complement C3b In Complex With Factor
B
Length = 741
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 68/186 (36%), Gaps = 30/186 (16%)
Query: 626 GALVKYRCERGYKVEGEPLSTCEDTGSWSG---------SVPECIYVDCGNPETVPNGGF 676
G ++Y C G+ TC TGSWS EC + C P NG +
Sbjct: 30 GQALEYVCPSGFYPYPVQTRTCRSTGSWSTLKTQDQKTVRKAECRAIHCPRPHDFENGEY 89
Query: 677 TLTSNATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTCKGNEGHARRLCLENGT 736
S + + C + Y L G A R C NG WS C G+ + GT
Sbjct: 90 WPRSPYYNVSDEISFHCYDGYTLRGSANRTCQVNGRWSGQTAICDNGAGYCSNPGIPIGT 149
Query: 737 WSSGLPTCKGCKTPKKSLTRPALSCLPGKRFYYHRGIFRLQNTQKVSYTRTCTKRGTWSG 796
G S R S ++ RG+ T + S RTC + G+WSG
Sbjct: 150 RKVG------------SQYRLEDSVT----YHCSRGL-----TLRGSQRRTCQEGGSWSG 188
Query: 797 HIPTCK 802
P+C+
Sbjct: 189 TEPSCQ 194
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Query: 779 TQKVSYTRTCTKRGTWSGHIPTCK--AIDCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVP 836
T + S RTC G WSG C A CS+PG I G + +Q +S V YHC
Sbjct: 111 TLRGSANRTCQVNGRWSGQTAICDNGAGYCSNPG-IPIGTRKVGSQYRLEDS-VTYHCSR 168
Query: 837 QYQRIGPYLRKCMEDGSWSGDEPRCEKRFNSGIPGRSRRSPINSF 881
G R C E GSWSG EP C+ F P + ++S
Sbjct: 169 GLTLRGSQRRTCQEGGSWSGTEPSCQDSFMYDTPQEVAEAFLSSL 213
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Query: 623 YKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECIYVD--CGNPETVPNGGFTLTS 680
Y + + + C GY + G TC+ G WSG C C NP +P G + S
Sbjct: 96 YNVSDEISFHCYDGYTLRGSANRTCQVNGRWSGQTAICDNGAGYCSNP-GIPIGTRKVGS 154
Query: 681 NATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTCK 721
+V Y C L G RR C E G+WS P+C+
Sbjct: 155 QYR-LEDSVTYHCSRGLTLRGSQRRTCQEGGSWSGTEPSCQ 194
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 272 ICQHNPANCGSPDRHVNTTFVGTVSTKLGSTISYACPEGNMLVGSATRTCKE-GFWTGVA 330
IC + C +P + T VG+ +L +++Y C G L GS RTC+E G W+G
Sbjct: 132 ICDNGAGYCSNPGIPIGTRKVGS-QYRLEDSVTYHCSRGLTLRGSQRRTCQEGGSWSGTE 190
Query: 331 PTCQYFQLQPMDVPNLVLYLFLSKLFRESYERLNVDCG 368
P+CQ + D P V FLS L E+ E ++ + G
Sbjct: 191 PSCQDSFM--YDTPQEVAEAFLSSL-TETIEGVDAEDG 225
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 57/150 (38%), Gaps = 29/150 (19%)
Query: 753 SLTRPALSC-LPGKRFYYHRGIFRL-QNTQKVSY------------TRTCTKRGTWSG-- 796
SL RP SC L G G FRL Q Q + Y TRTC G+WS
Sbjct: 4 SLARPQGSCSLEGVEI--KGGSFRLLQEGQALEYVCPSGFYPYPVQTRTCRSTGSWSTLK 61
Query: 797 -------HIPTCKAIDCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCM 849
C+AI C P +NG + + + +HC Y G R C
Sbjct: 62 TQDQKTVRKAECRAIHCPRPHDFENGEYWPRSPYYNVSDEISFHCYDGYTLRGSANRTCQ 121
Query: 850 EDGSWSGDEPRCEKRF----NSGIPGRSRR 875
+G WSG C+ N GIP +R+
Sbjct: 122 VNGRWSGQTAICDNGAGYCSNPGIPIGTRK 151
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 74/232 (31%), Gaps = 62/232 (26%)
Query: 300 GSTISYACPEGNMLVGSATRTCKE-GFWTGVAPTCQYFQLQPMDVPNLVLYLFLSKLFRE 358
G + Y CP G TRTC+ G W+ + Q K R+
Sbjct: 30 GQALEYVCPSGFYPYPVQTRTCRSTGSWSTLKTQDQ-------------------KTVRK 70
Query: 359 SYERLNVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGT 418
+ R + C + E+G + + C++ YTL G R C G+W+G
Sbjct: 71 AECRA-IHCPRPHDFENGEYWPRSPYYNVSDEISFHCYDGYTLRGSANRTCQVNGRWSGQ 129
Query: 419 EPQCLFDWCAEPPQISGGIVTTSGRRTGSVATYSCEPGFILFGSNVNIDCGRLTAIPYGS 478
C + A Y PG IP G+
Sbjct: 130 TAIC-----------------------DNGAGYCSNPG-----------------IPIGT 149
Query: 479 ISYLNETTYLGSEVLYSCSRNYRLVGHPRRSCLESKVWSDTAPKCEGKATKD 530
+ L V Y CSR L G RR+C E WS T P C+ D
Sbjct: 150 -RKVGSQYRLEDSVTYHCSRGLTLRGSQRRTCQEGGSWSGTEPSCQDSFMYD 200
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 52/135 (38%), Gaps = 30/135 (22%)
Query: 299 LGSTISYACPEGNMLVGSATRTCK-EGFWTGVAPTCQYFQLQPMDVPNLVLYLFLSKLFR 357
+ IS+ C +G L GSA RTC+ G W+G C N Y
Sbjct: 98 VSDEISFHCYDGYTLRGSANRTCQVNGRWSGQTAICD----------NGAGY-------- 139
Query: 358 ESYERLNVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNG 417
C I GT + + +V Y C TL G RR C +GG W+G
Sbjct: 140 ---------CSN-PGIPIGTRKVGSQYRLEDSVT-YHCSRGLTLRGSQRRTCQEGGSWSG 188
Query: 418 TEPQCLFDWCAEPPQ 432
TEP C + + PQ
Sbjct: 189 TEPSCQDSFMYDTPQ 203
>pdb|1H03|P Chain P, Human Cd55 Domains 3 & 4
pdb|1H03|Q Chain Q, Human Cd55 Domains 3 & 4
pdb|1H2Q|P Chain P, Human Cd55 Domains 3 & 4
pdb|1UOT|P Chain P, Human Cd55 Domains 3 & 4
Length = 125
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 625 IGALVKYRCERGYKVEGEPLSTCEDTGS---WSGSVPECIYVDCGNPETVPNGGFTLTSN 681
GA + + C GYK+ G S C +GS WS +PEC + C P + NG +
Sbjct: 22 FGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECREIYCPAPPQIDNGIIQGERD 81
Query: 682 ATYYGTAVLYECDENYRLEGHARRLCLEN---GTWSSGLPTCKG 722
Y +V Y C++ + + G C N G WS P C+G
Sbjct: 82 HYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPPPECRG 125
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 388 GAVAIYACHENYTLIGETRRVC---GDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRR 444
GA ++C+ Y L G T C G +W+ P+C +C PPQI GI+
Sbjct: 23 GATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECREIYCPAPPQIDNGIIQGERDH 82
Query: 445 TG--SVATYSCEPGFILFGSN-----VNIDCGRLTAIP 475
G TY+C GF + G + VN D G + P
Sbjct: 83 YGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPP 120
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 794 WSGHIPTCKAIDCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCM---E 850
WS +P C+ I C P IDNG + Y +V Y C + IG + C +
Sbjct: 53 WSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNND 112
Query: 851 DGSWSGDEPRC 861
+G WSG P C
Sbjct: 113 EGEWSGPPPEC 123
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 50/131 (38%), Gaps = 36/131 (27%)
Query: 299 LGSTISYACPEGNMLVGSATRTC----KEGFWTGVAPTCQYFQLQPMDVPNLVLYLFLSK 354
G+TIS++C G L GS + C W+ P C
Sbjct: 22 FGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPEC--------------------- 60
Query: 355 LFRESYERLNVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC---GD 411
RE Y C I++G + E + YAC++ +T+IGE C D
Sbjct: 61 --REIY------CPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNND 112
Query: 412 GGKWNGTEPQC 422
G+W+G P+C
Sbjct: 113 EGEWSGPPPEC 123
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 665 CGNPETVPNGGFTLTSNATYYGTAVLYECDENYRLEGHARRLCLENGT---WSSGLPTCK 721
C NP + NG + +G + + C+ Y+L G CL +G+ WS LP C+
Sbjct: 3 CPNPGEIRNGQIDVPG-GILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECR 61
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 45/123 (36%), Gaps = 24/123 (19%)
Query: 427 CAEPPQI-SGGIVTTSGRRTGSVATYSCEPGFILFGSNVN-------------------- 465
C P +I +G I G G+ ++SC G+ LFGS +
Sbjct: 3 CPNPGEIRNGQIDVPGGILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECRE 62
Query: 466 IDCGRLTAIPYGSISYLNETTYLGSEVLYSCSRNYRLVGHPRRSCL---ESKVWSDTAPK 522
I C I G I + V Y+C++ + ++G C + WS P+
Sbjct: 63 IYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPPPE 122
Query: 523 CEG 525
C G
Sbjct: 123 CRG 125
>pdb|1GKG|A Chain A, Structure Determination And Rational Mutagenesis Reveal
Binding Surface Of Immune Adherence Receptor, Cr1 (Cd35)
Length = 136
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 14/115 (12%)
Query: 620 VATYKIGALVKYRCERGYKVEGEPLSTC---EDTGSWSGSVPECIYVDCGNPETVPNGGF 676
+ ++G+ + Y C G+++ G + C +T WS P C + CG P T+ NG F
Sbjct: 21 ITDIQVGSRITYSCTTGHRLIGHSSAECILSGNTAHWSTKPPICQRIPCGLPPTIANGDF 80
Query: 677 TLTSNATY-YGTAVLYECD------ENYRLEGHARRLCLEN----GTWSSGLPTC 720
T+ + YG+ V Y C+ + + L G C N G WS P C
Sbjct: 81 ISTNRENFHYGSVVTYRCNLGSRGRKVFELVGEPSIYCTSNDDQVGIWSGPAPQC 135
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 58/159 (36%), Gaps = 42/159 (26%)
Query: 279 NCGSPDRHVNTTFVGTVSTKLGSTISYACPEGNMLVGSATRTC----KEGFWTGVAPTCQ 334
+C +P VN ++GS I+Y+C G+ L+G ++ C W+ P CQ
Sbjct: 6 SCKTPPDPVNGMVHVITDIQVGSRITYSCTTGHRLIGHSSAECILSGNTAHWSTKPPICQ 65
Query: 335 YFQLQPMDVPNLVLYLFLSKLFRESYERLNVDCGKLEHIEHGTVTLETTRTTHGAVAIYA 394
P +P + RE++ +G+V Y
Sbjct: 66 RI---PCGLPPTIANGDFISTNRENFH-------------------------YGSVVTYR 97
Query: 395 CH------ENYTLIGETRRVCGDG----GKWNGTEPQCL 423
C+ + + L+GE C G W+G PQC+
Sbjct: 98 CNLGSRGRKVFELVGEPSIYCTSNDDQVGIWSGPAPQCI 136
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 388 GAVAIYACHENYTLIGETRRVC---GDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRR 444
G+ Y+C + LIG + C G+ W+ P C C PP I+ G ++ R
Sbjct: 27 GSRITYSCTTGHRLIGHSSAECILSGNTAHWSTKPPICQRIPCGLPPTIANGDFISTNRE 86
Query: 445 T---GSVATYSCEPG 456
GSV TY C G
Sbjct: 87 NFHYGSVVTYRCNLG 101
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 48/129 (37%), Gaps = 32/129 (24%)
Query: 427 CAEPPQISGGIV-TTSGRRTGSVATYSCEPGFILFGSNV--------------------N 465
C PP G+V + + GS TYSC G L G +
Sbjct: 7 CKTPPDPVNGMVHVITDIQVGSRITYSCTTGHRLIGHSSAECILSGNTAHWSTKPPICQR 66
Query: 466 IDCGRLTAIPYGS-ISYLNETTYLGSEVLYSCS------RNYRLVGHPRRSCLESK---- 514
I CG I G IS E + GS V Y C+ + + LVG P C +
Sbjct: 67 IPCGLPPTIANGDFISTNRENFHYGSVVTYRCNLGSRGRKVFELVGEPSIYCTSNDDQVG 126
Query: 515 VWSDTAPKC 523
+WS AP+C
Sbjct: 127 IWSGPAPQC 135
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 475 PYGSISYLNETTYLGSEVLYSCSRNYRLVGHPRRSCLES---KVWSDTAPKCE 524
P + ++ +GS + YSC+ +RL+GH C+ S WS P C+
Sbjct: 13 PVNGMVHVITDIQVGSRITYSCTTGHRLIGHSSAECILSGNTAHWSTKPPICQ 65
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 11/79 (13%)
Query: 794 WSGHIPTCKAIDCSHPGSIDNGRVIIMN-QTTTYNSAVEYHC------VPQYQRIGPYLR 846
WS P C+ I C P +I NG I N + Y S V Y C ++ +G
Sbjct: 57 WSTKPPICQRIPCGLPPTIANGDFISTNRENFHYGSVVTYRCNLGSRGRKVFELVGEPSI 116
Query: 847 KCMED----GSWSGDEPRC 861
C + G WSG P+C
Sbjct: 117 YCTSNDDQVGIWSGPAPQC 135
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 10/49 (20%)
Query: 623 YKIGALVKYRCERG------YKVEGEPLSTC----EDTGSWSGSVPECI 661
+ G++V YRC G +++ GEP C + G WSG P+CI
Sbjct: 88 FHYGSVVTYRCNLGSRGRKVFELVGEPSIYCTSNDDQVGIWSGPAPQCI 136
>pdb|1HFH|A Chain A, Solution Structure Of A Pair Of Complement Modules By
Nuclear Magnetic Resonance
Length = 120
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 615 DSASSVATYKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNG 674
S SS +Y G + Y CE G+++ E +TC G WS S P+C + C +P + +G
Sbjct: 18 SSRSSQESYAHGTKLSYTCEGGFRISEENETTCY-MGKWS-SPPQCEGLPCKSPPEISHG 75
Query: 675 GFTLTSNATYYGTAVLYECDENYRLEGHARRLCL 708
S++ YG V Y+C E + ++G A CL
Sbjct: 76 VVAHMSDSYQYGEEVTYKCFEGFGIDGPAIAKCL 109
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 7/106 (6%)
Query: 364 NVDCGKLEHIEHGTVTLETTRT---THGAVAIYACHENYTLIGETRRVCGDGGKWNGTEP 420
+ C + IEHGT+ + HG Y C + + E C GKW+ + P
Sbjct: 2 KIPCSQPPQIEHGTINSSRSSQESYAHGTKLSYTCEGGFRISEENETTC-YMGKWS-SPP 59
Query: 421 QCLFDWCAEPPQISGGIVT--TSGRRTGSVATYSCEPGFILFGSNV 464
QC C PP+IS G+V + + G TY C GF + G +
Sbjct: 60 QCEGLPCKSPPEISHGVVAHMSDSYQYGEEVTYKCFEGFGIDGPAI 105
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 22/117 (18%)
Query: 427 CAEPPQISGGIVTTSGRRTGSVA-----TYSCEPGFILFGSNVN---------------I 466
C++PPQI G + +S S A +Y+CE GF + N +
Sbjct: 5 CSQPPQIEHGTINSSRSSQESYAHGTKLSYTCEGGFRISEENETTCYMGKWSSPPQCEGL 64
Query: 467 DCGRLTAIPYGSISYLNETTYLGSEVLYSCSRNYRLVGHPRRSCLESKVWSDTAPKC 523
C I +G +++++++ G EV Y C + + G CL K WS P C
Sbjct: 65 PCKSPPEISHGVVAHMSDSYQYGEEVTYKCFEGFGIDGPAIAKCLGEK-WSH-PPSC 119
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 765 KRFYYHRGIFRLQNTQKVSYTRTCTKRGTWSGHIPTCKAIDCSHPGSIDNGRVIIMNQTT 824
K Y G FR+ + TC G WS P C+ + C P I +G V M+ +
Sbjct: 31 KLSYTCEGGFRISEENET----TCY-MGKWSS-PPQCEGLPCKSPPEISHGVVAHMSDSY 84
Query: 825 TYNSAVEYHCVPQYQRIGPYLRKCMEDGSWS 855
Y V Y C + GP + KC+ + WS
Sbjct: 85 QYGEEVTYKCFEGFGIDGPAIAKCLGE-KWS 114
>pdb|1E5G|A Chain A, Solution Structure Of Central Cp Module Pair Of A Pox
Virus Complement Inhibitor
Length = 120
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 620 VATYKIGALVKYRCERGYKVEGEPLSTCE--DTGS--WSGSVPECIYVDCGNPETVPNGG 675
+ G+ + Y C GY + GE S CE TGS W+ P C V C +P ++ NG
Sbjct: 16 IGGVDFGSSITYSCNSGYHLIGESKSYCELGSTGSMVWNPEAPICESVKCQSPPSISNGR 75
Query: 676 FTLTSNATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTCK 721
+ G+ V Y C+ Y L G++ LC G WS PTC+
Sbjct: 76 HNGYEDFYTDGSVVTYSCNSGYSLIGNSGVLC-SGGEWSD-PPTCQ 119
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 367 CGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGK----WNGTEPQC 422
C I++G L+ G+ Y+C+ Y LIGE++ C G WN P C
Sbjct: 3 CPSPRDIDNGQ--LDIGGVDFGSSITYSCNSGYHLIGESKSYCELGSTGSMVWNPEAPIC 60
Query: 423 LFDWCAEPPQISGGIVT--TSGRRTGSVATYSCEPGFILFGSN 463
C PP IS G GSV TYSC G+ L G++
Sbjct: 61 ESVKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIGNS 103
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 55/142 (38%), Gaps = 36/142 (25%)
Query: 280 CGSPDRHVNTTFVGTVSTKLGSTISYACPEGNMLVGSATRTCKEG-----FWTGVAPTCQ 334
C SP R ++ + GS+I+Y+C G L+G + C+ G W AP C+
Sbjct: 3 CPSP-RDIDNGQLDIGGVDFGSSITYSCNSGYHLIGESKSYCELGSTGSMVWNPEAPICE 61
Query: 335 YFQLQPMDVPNLVLYLFLSKLFRESYERLNVDCGKLEHIEHGTVTLETTRTTHGAVAIYA 394
+V C I +G T G+V Y+
Sbjct: 62 -----------------------------SVKCQSPPSISNGRHNGYEDFYTDGSVVTYS 92
Query: 395 CHENYTLIGETRRVCGDGGKWN 416
C+ Y+LIG + +C GG+W+
Sbjct: 93 CNSGYSLIGNSGVLC-SGGEWS 113
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 789 TKRGTWSGHIPTCKAIDCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKC 848
T W+ P C+++ C P SI NGR T S V Y C Y IG C
Sbjct: 48 TGSMVWNPEAPICESVKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIGNSGVLC 107
Query: 849 MEDGSWSGDEPRCE 862
G WS D P C+
Sbjct: 108 -SGGEWS-DPPTCQ 119
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 45/119 (37%), Gaps = 23/119 (19%)
Query: 427 CAEPPQISGGIVTTSGRRTGSVATYSCEPGFILFGSNV---------------------N 465
C P I G + G GS TYSC G+ L G + +
Sbjct: 3 CPSPRDIDNGQLDIGGVDFGSSITYSCNSGYHLIGESKSYCELGSTGSMVWNPEAPICES 62
Query: 466 IDCGRLTAIPYGSISYLNETTYLGSEVLYSCSRNYRLVGHPRRSCLESKVWSDTAPKCE 524
+ C +I G + + GS V YSC+ Y L+G+ C + WSD P C+
Sbjct: 63 VKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIGNSGVLCSGGE-WSD-PPTCQ 119
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 300 GSTISYACPEGNMLVGSATRTCKEGFWTGVAPTCQ 334
GS ++Y+C G L+G++ C G W+ PTCQ
Sbjct: 86 GSVVTYSCNSGYSLIGNSGVLCSGGEWSD-PPTCQ 119
>pdb|2QFH|A Chain A, Solution Structure Of The C-Terminal Scr-1620 FRAGMENT OF
Complement Factor H
Length = 333
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/335 (23%), Positives = 122/335 (36%), Gaps = 78/335 (23%)
Query: 427 CAEPPQISGGIVT--TSGRRTGSVATYSCEPGFILFG---------------SNVNIDCG 469
C PP+IS G+V + + G TY C GF + G S + DC
Sbjct: 10 CKSPPEISHGVVAHMSDSYQYGEEVTYKCFEGFGIDGPAIAKCLGEKWSHPPSCIKTDCL 69
Query: 470 RL----TAIPYGSISYLNETTYLGSEVLYSCSRNYRLVGHPRRSCLESKVWSDTAPKCEG 525
L AIP G + G +V Y+C+ Y++ G +C+ S+ W+ P C
Sbjct: 70 SLPSFENAIPMGE---KKDVYKAGEQVTYTCATYYKMDGASNVTCINSR-WTGR-PTCRD 124
Query: 526 KATKDIKVCSNVAVDRREI-------------RCPEPTLPAHSILSVTGNDRLYGRTLIK 572
+ + N + R++ R P ++ + GN
Sbjct: 125 TSCVNPPTVQNAYIVSRQMSKYPSGERVRYQCRSPYEMFGDEEVMCLNGN---------W 175
Query: 573 TADSASSVATYKIGALPTLPAHSILSVTGNDRLYGRTLIKTADSASSVATYKIGALVKYR 632
T +T K G P + I S ++ Y + V+Y+
Sbjct: 176 TEPPQCKDSTGKCGPPPPIDNGDITSF-------------------PLSVYAPASSVEYQ 216
Query: 633 CERGYKVEGEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGFTL--TSNATYY---GT 687
C+ Y++EG TC + G WS P+C++ + E + N L T+ Y G
Sbjct: 217 CQNLYQLEGNKRITCRN-GQWS-EPPKCLHPCVISREIMENYNIALRWTAKQKLYSRTGE 274
Query: 688 AVLYECDENYRLEGHARRLCLENGTWSSGL--PTC 720
+V + C YRL +R L W L PTC
Sbjct: 275 SVEFVCKRGYRLS--SRSHTLRTTCWDGKLEYPTC 307
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 99/246 (40%), Gaps = 36/246 (14%)
Query: 622 TYKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGFTLTSN 681
+Y+ G V Y+C G+ ++G ++ C G P CI DC + + N
Sbjct: 27 SYQYGEEVTYKCFEGFGIDGPAIAKC--LGEKWSHPPSCIKTDCLSLPSFENAIPMGEKK 84
Query: 682 ATY-YGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTCKGNEGHARRLCLENGTWSSG 740
Y G V Y C Y+++G + C+ N W +G PTC+ T
Sbjct: 85 DVYKAGEQVTYTCATYYKMDGASNVTCI-NSRW-TGRPTCR-------------DTSCVN 129
Query: 741 LPTCKGCKTPKKSLTR-PALSCLPGKRFYYH-RGIFRLQNTQKVSYTRTCTKRGTWSGHI 798
PT + + +++ P+ G+R Y R + + ++V C G W+
Sbjct: 130 PPTVQNAYIVSRQMSKYPS-----GERVRYQCRSPYEMFGDEEV----MCLN-GNWT-EP 178
Query: 799 PTCKAI--DCSHPGSIDNGRVIIMNQTT-TYNSAVEYHCVPQYQRIGPYLRKCMEDGSWS 855
P CK C P IDNG + + S+VEY C YQ G C +G WS
Sbjct: 179 PQCKDSTGKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITC-RNGQWS 237
Query: 856 GDEPRC 861
+ P+C
Sbjct: 238 -EPPKC 242
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 89/203 (43%), Gaps = 31/203 (15%)
Query: 663 VDCGNPETVPNGGFTLTSNATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTCKG 722
+ C +P + +G S++ YG V Y+C E + ++G A CL G S P+C
Sbjct: 8 LPCKSPPEISHGVVAHMSDSYQYGEEVTYKCFEGFGIDGPAIAKCL--GEKWSHPPSCIK 65
Query: 723 NEGHARRLCLENGTWSSGLPTCKGCKTPKKSLTRPALSCLPGKRFYYH-RGIFRLQNTQK 781
+ CL ++ + +P + KK + + G++ Y +++
Sbjct: 66 TD------CLSLPSFENAIPMGE-----KKDVYK------AGEQVTYTCATYYKMDGASN 108
Query: 782 VSYTRTCTKRGTWSGHIPTCKAIDCSHPGSIDNGRVIIMNQTTTYNSA--VEYHCVPQYQ 839
V TC W+G PTC+ C +P ++ N I+ Q + Y S V Y C Y+
Sbjct: 109 V----TCIN-SRWTGR-PTCRDTSCVNPPTVQNA-YIVSRQMSKYPSGERVRYQCRSPYE 161
Query: 840 RIGPYLRKCMEDGSWSGDEPRCE 862
G C+ +G+W+ + P+C+
Sbjct: 162 MFGDEEVMCL-NGNWT-EPPQCK 182
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 82/250 (32%), Gaps = 56/250 (22%)
Query: 296 STKLGSTISYACPEGNMLVGSATRTCKEGFWTGVAPTCQYFQLQPMDVPNLVLYLFLSKL 355
S + G ++Y C EG + G A C W+ P+C
Sbjct: 27 SYQYGEEVTYKCFEGFGIDGPAIAKCLGEKWSH-PPSC---------------------- 63
Query: 356 FRESYERLNVDCGKLEHIEHGTVTLETTRTTH-GAVAIYACHENYTLIGETRRVCGDGGK 414
+ DC L E+ E G Y C Y + G + C + +
Sbjct: 64 -------IKTDCLSLPSFENAIPMGEKKDVYKAGEQVTYTCATYYKMDGASNVTCINS-R 115
Query: 415 WNGTEPQCLFDWCAEPPQISGGIVTT---SGRRTGSVATYSCEPGFILFGSNVNI----- 466
W G P C C PP + + + S +G Y C + +FG +
Sbjct: 116 WTG-RPTCRDTSCVNPPTVQNAYIVSRQMSKYPSGERVRYQCRSPYEMFGDEEVMCLNGN 174
Query: 467 ------------DCGRLTAIPYGSISYLNETTYL-GSEVLYSCSRNYRLVGHPRRSCLES 513
CG I G I+ + Y S V Y C Y+L G+ R +C
Sbjct: 175 WTEPPQCKDSTGKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCRNG 234
Query: 514 KVWSDTAPKC 523
+ WS+ PKC
Sbjct: 235 Q-WSE-PPKC 242
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 67/191 (35%), Gaps = 23/191 (12%)
Query: 358 ESYERLNVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNG 417
E+ + C I HG V + +G Y C E + + G C G KW+
Sbjct: 1 EAEAEFGLPCKSPPEISHGVVAHMSDSYQYGEEVTYKCFEGFGIDGPAIAKCL-GEKWSH 59
Query: 418 TEPQCLFDWCAEPPQISGGIVTTSGR---RTGSVATYSCEPGFILFG-SNVNIDCGRLTA 473
P C+ C P I + + G TY+C + + G SNV R T
Sbjct: 60 P-PSCIKTDCLSLPSFENAIPMGEKKDVYKAGEQVTYTCATYYKMDGASNVTCINSRWTG 118
Query: 474 IPY-GSISYLNETT----YL----------GSEVLYSCSRNYRLVGHPRRSCLESKVWSD 518
P S +N T Y+ G V Y C Y + G CL W++
Sbjct: 119 RPTCRDTSCVNPPTVQNAYIVSRQMSKYPSGERVRYQCRSPYEMFGDEEVMCLNGN-WTE 177
Query: 519 TAPKCEGKATK 529
P+C+ K
Sbjct: 178 -PPQCKDSTGK 187
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 804 IDCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCMEDGSWSGDEPRCEK 863
+ C P I +G V M+ + Y V Y C + GP + KC+ + WS P C K
Sbjct: 8 LPCKSPPEISHGVVAHMSDSYQYGEEVTYKCFEGFGIDGPAIAKCLGE-KWS-HPPSCIK 65
Query: 864 RFNSGIPGRSRRSPI 878
+P P+
Sbjct: 66 TDCLSLPSFENAIPM 80
>pdb|2QY0|A Chain A, Active Dimeric Structure Of The Catalytic Domain Of C1r
Reveals Enzyme-product Like Contacts
pdb|2QY0|C Chain C, Active Dimeric Structure Of The Catalytic Domain Of C1r
Reveals Enzyme-product Like Contacts
Length = 159
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 14/115 (12%)
Query: 609 TLIKTADSASSVATYKIGALVKYRCERGYK-VEGEPL-----STCEDTGSWSGSVPECIY 662
T+I+ Y I C++GY+ +EG + + C+D G+W ++P C
Sbjct: 15 TIIQNLQPQYQFRDYFIAT-----CKQGYQLIEGNQVLHSFTAVCQDDGTWHRAMPRCKI 69
Query: 663 VDCGNPETVPNGGF--TLTSNATYYGTAVLYECDE-NYRLEGHARRLCLENGTWS 714
DCG P +PNG F T T Y + Y C E Y+++ A E G ++
Sbjct: 70 KDCGQPRNLPNGDFRYTTTMGVNTYKARIQYYCHEPYYKMQTRAGSRESEQGVYT 124
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 20/97 (20%)
Query: 783 SYTRTCTKRGTWSGHIPTCKAIDCSHPGSIDNG--RVIIMNQTTTYNSAVEYHCVPQYQR 840
S+T C GTW +P CK DC P ++ NG R TY + ++Y+C Y +
Sbjct: 49 SFTAVCQDDGTWHRAMPRCKIKDCGQPRNLPNGDFRYTTTMGVNTYKARIQYYCHEPYYK 108
Query: 841 I-----------GPYLRKCMEDGSWSGDE-----PRC 861
+ G Y C G W ++ PRC
Sbjct: 109 MQTRAGSRESEQGVYT--CTAQGIWKNEQKGEKIPRC 143
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 64/164 (39%), Gaps = 37/164 (22%)
Query: 665 CGNPETVPNGGFTLTSNAT---YYGTAVLYECDENYRL-EGHA-----RRLCLENGTWSS 715
C P+T+ FT+ N + + C + Y+L EG+ +C ++GTW
Sbjct: 5 CPQPKTLDE--FTIIQNLQPQYQFRDYFIATCKQGYQLIEGNQVLHSFTAVCQDDGTWHR 62
Query: 716 GLPTCKGNE-GHARRLCLENGTWSSGLPTCKGCKTPKKSLTRPALSCLPGKRFYYHRGIF 774
+P CK + G R L NG + T G T K + ++Y H +
Sbjct: 63 AMPRCKIKDCGQPRN--LPNGDFR--YTTTMGVNTYKARI-----------QYYCHEPYY 107
Query: 775 RLQ----NTQKVSYTRTCTKRGTWSGH-----IPTCKAIDCSHP 809
++Q + + TCT +G W IP C + C P
Sbjct: 108 KMQTRAGSRESEQGVYTCTAQGIWKNEQKGEKIPRCLPV-CGKP 150
>pdb|1GPZ|A Chain A, The Crystal Structure Of The Zymogen Catalytic Domain Of
Complement Protease C1r
pdb|1GPZ|B Chain B, The Crystal Structure Of The Zymogen Catalytic Domain Of
Complement Protease C1r
Length = 399
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 13/97 (13%)
Query: 609 TLIKTADSASSVATYKIGALVKYRCERGYK-VEGEPL-----STCEDTGSWSGSVPECIY 662
T+I+ Y I C++GY+ +EG + + C+D G+W ++P C
Sbjct: 13 TIIQNLQPQYQFRDYFIAT-----CKQGYQLIEGNQVLHSFTAVCQDDGTWHRAMPRCKI 67
Query: 663 VDCGNPETVPNGGF--TLTSNATYYGTAVLYECDENY 697
DCG P +PNG F T T Y + Y C E Y
Sbjct: 68 KDCGQPRNLPNGDFRYTTTMGVNTYKARIQYYCHEPY 104
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 20/97 (20%)
Query: 783 SYTRTCTKRGTWSGHIPTCKAIDCSHPGSIDNG--RVIIMNQTTTYNSAVEYHCVPQYQR 840
S+T C GTW +P CK DC P ++ NG R TY + ++Y+C Y +
Sbjct: 47 SFTAVCQDDGTWHRAMPRCKIKDCGQPRNLPNGDFRYTTTMGVNTYKARIQYYCHEPYYK 106
Query: 841 I-----------GPYLRKCMEDGSWSGDE-----PRC 861
+ G Y C G W ++ PRC
Sbjct: 107 MQTRAGSRESEQGVY--TCTAQGIWKNEQKGEKIPRC 141
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 65/166 (39%), Gaps = 37/166 (22%)
Query: 663 VDCGNPETVPNGGFTLTSNAT---YYGTAVLYECDENYRL-EGHA-----RRLCLENGTW 713
+ C P+T+ FT+ N + + C + Y+L EG+ +C ++GTW
Sbjct: 1 IKCPQPKTLDE--FTIIQNLQPQYQFRDYFIATCKQGYQLIEGNQVLHSFTAVCQDDGTW 58
Query: 714 SSGLPTCKGNE-GHARRLCLENGTWSSGLPTCKGCKTPKKSLTRPALSCLPGKRFYYHRG 772
+P CK + G R L NG + T G T K + ++Y H
Sbjct: 59 HRAMPRCKIKDCGQPRN--LPNGDFR--YTTTMGVNTYKARI-----------QYYCHEP 103
Query: 773 IFRLQ----NTQKVSYTRTCTKRGTWSGH-----IPTCKAIDCSHP 809
+++Q + + TCT +G W IP C + C P
Sbjct: 104 YYKMQTRAGSRESEQGVYTCTAQGIWKNEQKGEKIPRCLPV-CGKP 148
>pdb|2ATY|A Chain A, Complement Receptor Chimaeric Conjugate Cr2-Ig
pdb|2ATY|B Chain B, Complement Receptor Chimaeric Conjugate Cr2-Ig
Length = 376
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 625 IGALVKYRCERGYKVEGEPLSTC----EDTGSWSGSVPECIYVD--CGNPETVPNGGFTL 678
+G +++Y C +++ GE C + G+W P+C Y + PE + GG+ +
Sbjct: 24 VGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAPKCEYFNKYSSCPEPIVPGGYKI 83
Query: 679 TSNATY-YGTAVLYECDENYRLEGHARRLCLENGTW-SSGLPTC 720
+ Y +G +V + C N+ + G+ C N W + LPTC
Sbjct: 84 RGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWGPTRLPTC 127
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 26/118 (22%)
Query: 465 NIDCGRLTAIPYGSISYLNETTYLGSEVLYSCSRNYRLVGHPRRSCL-ESKV---WSDTA 520
+I CG I G ISY + +G+ + YSCS +RL+G C+ + KV W A
Sbjct: 1 DISCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPA 60
Query: 521 PKCEGKATKDIKVCSNVAVDRREIRCPEPTLPAHSILSVTGNDRLYGRTLIKTADSAS 578
PKCE + CPEP +P G ++ G T + DS +
Sbjct: 61 PKCE--------------YFNKYSSCPEPIVP--------GGYKIRGSTPYRHGDSVT 96
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 11/109 (10%)
Query: 364 NVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC----GDGGKWNGTE 419
++ CG I +G ++ +T G V Y+C + LIGE +C G W+
Sbjct: 1 DISCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPA 60
Query: 420 PQC----LFDWCAEPPQISGG--IVTTSGRRTGSVATYSCEPGFILFGS 462
P+C + C E P + GG I ++ R G T++C+ F + G+
Sbjct: 61 PKCEYFNKYSSCPE-PIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGN 108
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 663 VDCGNPETVPNGGFTLTSNATYYGTAVLYECDENYRLEGHARRLCLE----NGTWSSGLP 718
+ CG+P + NG + S GT + Y C +RL G LC+ +GTW P
Sbjct: 2 ISCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAP 61
Query: 719 TCK 721
C+
Sbjct: 62 KCE 64
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 804 IDCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCME----DGSWSGDEP 859
I C P I NGR+ + + + Y C ++ IG C+ DG+W P
Sbjct: 2 ISCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAP 61
Query: 860 RCE 862
+CE
Sbjct: 62 KCE 64
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 54/154 (35%), Gaps = 37/154 (24%)
Query: 279 NCGSPDRHVN--TTFVGTVSTKLGSTISYACPEGNMLVGSATRTC-----KEGFWTGVAP 331
+CGSP +N ++ T +G+ I Y+C L+G + C +G W AP
Sbjct: 3 SCGSPPPILNGRISYYST-PIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAP 61
Query: 332 TCQYFQLQPMDVPNLVLYLFLSKLFRESYERLNVDCGKLEHIEHGTVTLE-TTRTTHGAV 390
C+YF N E I G + +T HG
Sbjct: 62 KCEYF---------------------------NKYSSCPEPIVPGGYKIRGSTPYRHGDS 94
Query: 391 AIYACHENYTLIGETRRVCGDGGKWNGTE-PQCL 423
+AC N+++ G C W T P C+
Sbjct: 95 VTFACKTNFSMNGNKSVWCQANNMWGPTRLPTCV 128
>pdb|1ZJK|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human
Masp-2
Length = 403
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 15/116 (12%)
Query: 621 ATYKIGALVKYRCERGYKV-EGE-PL----STCEDTGSWSGSVPECIYVDCGNPETVPNG 674
A Y + CE GY++ +G PL + C+ GSW +P C VDCG P+ +P+G
Sbjct: 33 AKYILKDSFSIFCETGYELLQGHLPLKSFTAVCQKDGSWDRPMPACSIVDCGPPDDLPSG 92
Query: 675 --GFTLTSNATYYGTAVLYECDENYRLE--GHARRLCLENGTWSS-----GLPTCK 721
+ T Y + Y C+E + + +C +G W+S LP C+
Sbjct: 93 RVEYITGPGVTTYKAVIQYSCEETFYTMKVNDGKYVCEADGFWTSSKGEKSLPVCE 148
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 783 SYTRTCTKRGTWSGHIPTCKAIDCSHPGSIDNGRV--IIMNQTTTYNSAVEYHCVPQYQR 840
S+T C K G+W +P C +DC P + +GRV I TTY + ++Y C +
Sbjct: 60 SFTAVCQKDGSWDRPMPACSIVDCGPPDDLPSGRVEYITGPGVTTYKAVIQYSCEETFYT 119
Query: 841 I----GPYLRKCMEDGSWSGDE-----PRCE 862
+ G Y+ C DG W+ + P CE
Sbjct: 120 MKVNDGKYV--CEADGFWTSSKGEKSLPVCE 148
>pdb|4FXG|G Chain G, Complement C4 In Complex With Masp-2
pdb|4FXG|I Chain I, Complement C4 In Complex With Masp-2
Length = 154
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 621 ATYKIGALVKYRCERGYKV-EGE-PL----STCEDTGSWSGSVPECIYVDCGNPETVPNG 674
A Y + CE GY++ +G PL + C+ GSW +P C VDCG P+ +P+G
Sbjct: 26 AKYILKDSFSIFCETGYELLQGHLPLKSFTAVCQKDGSWDRPMPACSIVDCGPPDDLPSG 85
Query: 675 --GFTLTSNATYYGTAVLYECDENYRLE--GHARRLCLENGTWSS-----GLPTCKGNEG 725
+ T Y + Y C+E + + +C +G W+S LP C+ G
Sbjct: 86 RVEYITGPGVTTYKAVIQYSCEETFYTMKVNDGKYVCEADGFWTSSKGEKSLPVCEPVCG 145
Query: 726 HARR 729
+ R
Sbjct: 146 LSAR 149
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 783 SYTRTCTKRGTWSGHIPTCKAIDCSHPGSIDNGRV--IIMNQTTTYNSAVEYHCVPQYQR 840
S+T C K G+W +P C +DC P + +GRV I TTY + ++Y C +
Sbjct: 53 SFTAVCQKDGSWDRPMPACSIVDCGPPDDLPSGRVEYITGPGVTTYKAVIQYSCEETFYT 112
Query: 841 I----GPYLRKCMEDGSWSGDE-----PRCE 862
+ G Y+ C DG W+ + P CE
Sbjct: 113 MKVNDGKYV--CEADGFWTSSKGEKSLPVCE 141
>pdb|1W2R|A Chain A, Solution Structure Of Cr2 Scr 1-2 By X-Ray Scattering
pdb|1W2S|B Chain B, Solution Structure Of Cr2 Scr 1-2 In Its Complex With C3d
By X-Ray Scattering
Length = 142
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 625 IGALVKYRCERGYKVEGEPLSTC----EDTGSWSGSVPECIYVD--CGNPETVPNGGFTL 678
+G +++Y C +++ GE C + G+W P+C Y + PE + GG+ +
Sbjct: 27 VGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAPKCQYFNKYSSCPEPIVPGGYKI 86
Query: 679 TSNATY-YGTAVLYECDENYRLEGHARRLCLENGTWS-SGLPTC 720
+ Y +G +V + C N+ + G+ C N W + LPTC
Sbjct: 87 RGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWGPTRLPTC 130
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 49/117 (41%), Gaps = 26/117 (22%)
Query: 466 IDCGRLTAIPYGSISYLNETTYLGSEVLYSCSRNYRLVGHPRRSCL-ESKV---WSDTAP 521
I CG I G ISY + +G+ + YSCS +RL+G C+ + KV W AP
Sbjct: 5 ISCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAP 64
Query: 522 KCEGKATKDIKVCSNVAVDRREIRCPEPTLPAHSILSVTGNDRLYGRTLIKTADSAS 578
KC+ + CPEP +P G ++ G T + DS +
Sbjct: 65 KCQ--------------YFNKYSSCPEPIVP--------GGYKIRGSTPYRHGDSVT 99
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 11/112 (9%)
Query: 361 ERLNVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC----GDGGKWN 416
E + CG I +G ++ +T G V Y+C + LIGE +C G W+
Sbjct: 1 EAEAISCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWD 60
Query: 417 GTEPQCL----FDWCAEPPQISGG--IVTTSGRRTGSVATYSCEPGFILFGS 462
P+C + C E P + GG I ++ R G T++C+ F + G+
Sbjct: 61 KPAPKCQYFNKYSSCPE-PIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGN 111
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 663 VDCGNPETVPNGGFTLTSNATYYGTAVLYECDENYRLEGHARRLCLE----NGTWSSGLP 718
+ CG+P + NG + S GT + Y C +RL G LC+ +GTW P
Sbjct: 5 ISCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAP 64
Query: 719 TCK 721
C+
Sbjct: 65 KCQ 67
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 802 KAIDCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCME----DGSWSGD 857
+AI C P I NGR+ + + + Y C ++ IG C+ DG+W
Sbjct: 3 EAISCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKP 62
Query: 858 EPRCE 862
P+C+
Sbjct: 63 APKCQ 67
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 52/153 (33%), Gaps = 35/153 (22%)
Query: 279 NCGSPDRHVNTTF-VGTVSTKLGSTISYACPEGNMLVGSATRTC-----KEGFWTGVAPT 332
+CGSP +N + +G+ I Y+C L+G + C +G W AP
Sbjct: 6 SCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAPK 65
Query: 333 CQYFQLQPMDVPNLVLYLFLSKLFRESYERLNVDCGKLEHIEHGTVTLE-TTRTTHGAVA 391
CQYF N E I G + +T HG
Sbjct: 66 CQYF---------------------------NKYSSCPEPIVPGGYKIRGSTPYRHGDSV 98
Query: 392 IYACHENYTLIGETRRVCGDGGKWNGTE-PQCL 423
+AC N+++ G C W T P C+
Sbjct: 99 TFACKTNFSMNGNKSVWCQANNMWGPTRLPTCV 131
>pdb|1GHQ|B Chain B, Cr2-C3d Complex Structure
pdb|1GHQ|C Chain C, Cr2-C3d Complex Structure
Length = 134
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 625 IGALVKYRCERGYKVEGEPLSTC----EDTGSWSGSVPECIYVD--CGNPETVPNGGFTL 678
+G +++Y C +++ GE C + G+W P+C Y + PE + GG+ +
Sbjct: 24 VGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAPKCEYFNKYSSCPEPIVPGGYKI 83
Query: 679 TSNATY-YGTAVLYECDENYRLEGHARRLCLENGTWS-SGLPTC 720
+ Y +G +V + C N+ + G+ C N W + LPTC
Sbjct: 84 RGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWGPTRLPTC 127
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 49/117 (41%), Gaps = 26/117 (22%)
Query: 466 IDCGRLTAIPYGSISYLNETTYLGSEVLYSCSRNYRLVGHPRRSCL-ESKV---WSDTAP 521
I CG I G ISY + +G+ + YSCS +RL+G C+ + KV W AP
Sbjct: 2 ISCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAP 61
Query: 522 KCEGKATKDIKVCSNVAVDRREIRCPEPTLPAHSILSVTGNDRLYGRTLIKTADSAS 578
KCE + CPEP +P G ++ G T + DS +
Sbjct: 62 KCE--------------YFNKYSSCPEPIVP--------GGYKIRGSTPYRHGDSVT 96
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 11/108 (10%)
Query: 365 VDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC----GDGGKWNGTEP 420
+ CG I +G ++ +T G V Y+C + LIGE +C G W+ P
Sbjct: 2 ISCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAP 61
Query: 421 QC----LFDWCAEPPQISGG--IVTTSGRRTGSVATYSCEPGFILFGS 462
+C + C E P + GG I ++ R G T++C+ F + G+
Sbjct: 62 KCEYFNKYSSCPE-PIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGN 108
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 663 VDCGNPETVPNGGFTLTSNATYYGTAVLYECDENYRLEGHARRLCLE----NGTWSSGLP 718
+ CG+P + NG + S GT + Y C +RL G LC+ +GTW P
Sbjct: 2 ISCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAP 61
Query: 719 TCK 721
C+
Sbjct: 62 KCE 64
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 803 AIDCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCME----DGSWSGDE 858
AI C P I NGR+ + + + Y C ++ IG C+ DG+W
Sbjct: 1 AISCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPA 60
Query: 859 PRCE 862
P+CE
Sbjct: 61 PKCE 64
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 52/152 (34%), Gaps = 33/152 (21%)
Query: 279 NCGSPDRHVNTTF-VGTVSTKLGSTISYACPEGNMLVGSATRTC-----KEGFWTGVAPT 332
+CGSP +N + +G+ I Y+C L+G + C +G W AP
Sbjct: 3 SCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAPK 62
Query: 333 CQYFQLQPMDVPNLVLYLFLSKLFRESYERLNVDCGKLEHIEHGTVTLETTRTTHGAVAI 392
C+YF + P + + G +T HG
Sbjct: 63 CEYFN-KYSSCPEPI-------------------------VPGGYKIRGSTPYRHGDSVT 96
Query: 393 YACHENYTLIGETRRVCGDGGKWNGTE-PQCL 423
+AC N+++ G C W T P C+
Sbjct: 97 FACKTNFSMNGNKSVWCQANNMWGPTRLPTCV 128
>pdb|3OED|C Chain C, The Structure Of The Complex Between Complement Receptor
Cr2 And Its Ligand Complement Fragment C3d
pdb|3OED|D Chain D, The Structure Of The Complex Between Complement Receptor
Cr2 And Its Ligand Complement Fragment C3d
Length = 135
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 625 IGALVKYRCERGYKVEGEPLSTC----EDTGSWSGSVPECIYVD--CGNPETVPNGGFTL 678
+G +++Y C +++ GE C + G+W P+C Y + PE + GG+ +
Sbjct: 25 VGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAPKCEYFNKYSSCPEPIVPGGYKI 84
Query: 679 TSNATY-YGTAVLYECDENYRLEGHARRLCLENGTWS-SGLPTC 720
+ Y +G +V + C N+ + G+ C N W + LPTC
Sbjct: 85 RGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWGPTRLPTC 128
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 26/119 (21%)
Query: 464 VNIDCGRLTAIPYGSISYLNETTYLGSEVLYSCSRNYRLVGHPRRSCL-ESKV---WSDT 519
+ I CG I G ISY + +G+ + YSCS +RL+G C+ + KV W
Sbjct: 1 MGISCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKP 60
Query: 520 APKCEGKATKDIKVCSNVAVDRREIRCPEPTLPAHSILSVTGNDRLYGRTLIKTADSAS 578
APKCE + CPEP +P G ++ G T + DS +
Sbjct: 61 APKCE--------------YFNKYSSCPEPIVP--------GGYKIRGSTPYRHGDSVT 97
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 11/110 (10%)
Query: 363 LNVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC----GDGGKWNGT 418
+ + CG I +G ++ +T G V Y+C + LIGE +C G W+
Sbjct: 1 MGISCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKP 60
Query: 419 EPQC----LFDWCAEPPQISGG--IVTTSGRRTGSVATYSCEPGFILFGS 462
P+C + C E P + GG I ++ R G T++C+ F + G+
Sbjct: 61 APKCEYFNKYSSCPE-PIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGN 109
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 663 VDCGNPETVPNGGFTLTSNATYYGTAVLYECDENYRLEGHARRLCLE----NGTWSSGLP 718
+ CG+P + NG + S GT + Y C +RL G LC+ +GTW P
Sbjct: 3 ISCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAP 62
Query: 719 TCK 721
C+
Sbjct: 63 KCE 65
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 803 AIDCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCME----DGSWSGDE 858
I C P I NGR+ + + + Y C ++ IG C+ DG+W
Sbjct: 2 GISCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPA 61
Query: 859 PRCE 862
P+CE
Sbjct: 62 PKCE 65
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 52/152 (34%), Gaps = 33/152 (21%)
Query: 279 NCGSPDRHVNTTF-VGTVSTKLGSTISYACPEGNMLVGSATRTC-----KEGFWTGVAPT 332
+CGSP +N + +G+ I Y+C L+G + C +G W AP
Sbjct: 4 SCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAPK 63
Query: 333 CQYFQLQPMDVPNLVLYLFLSKLFRESYERLNVDCGKLEHIEHGTVTLETTRTTHGAVAI 392
C+YF + E + + G +T HG
Sbjct: 64 CEYFN-----------------KYSSCPEPI---------VPGGYKIRGSTPYRHGDSVT 97
Query: 393 YACHENYTLIGETRRVCGDGGKWNGTE-PQCL 423
+AC N+++ G C W T P C+
Sbjct: 98 FACKTNFSMNGNKSVWCQANNMWGPTRLPTCV 129
>pdb|1LY2|A Chain A, Crystal Structure Of Unliganded Human Cd21 Scr1-Scr2
(Complement Receptor Type 2)
Length = 130
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 625 IGALVKYRCERGYKVEGEPLSTC----EDTGSWSGSVPECIYVD--CGNPETVPNGGFTL 678
+G +++Y C +++ GE C + G+W P+C Y + PE + GG+ +
Sbjct: 24 VGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAPKCEYFNKYSSCPEPIVPGGYKI 83
Query: 679 TSNATY-YGTAVLYECDENYRLEGHARRLCLENGTWS-SGLPTC 720
+ Y +G +V + C N+ + G+ C N W + LPTC
Sbjct: 84 RGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWGPTRLPTC 127
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 26/116 (22%)
Query: 467 DCGRLTAIPYGSISYLNETTYLGSEVLYSCSRNYRLVGHPRRSCL-ESKV---WSDTAPK 522
CG I G ISY + +G+ + YSCS +RL+G C+ + KV W APK
Sbjct: 3 SCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAPK 62
Query: 523 CEGKATKDIKVCSNVAVDRREIRCPEPTLPAHSILSVTGNDRLYGRTLIKTADSAS 578
CE + CPEP +P G ++ G T + DS +
Sbjct: 63 CE--------------YFNKYSSCPEPIVP--------GGYKIRGSTPYRHGDSVT 96
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 11/108 (10%)
Query: 365 VDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC----GDGGKWNGTEP 420
CG I +G ++ +T G V Y+C + LIGE +C G W+ P
Sbjct: 2 ASCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAP 61
Query: 421 QC----LFDWCAEPPQISGG--IVTTSGRRTGSVATYSCEPGFILFGS 462
+C + C E P + GG I ++ R G T++C+ F + G+
Sbjct: 62 KCEYFNKYSSCPE-PIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGN 108
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 663 VDCGNPETVPNGGFTLTSNATYYGTAVLYECDENYRLEGHARRLCLE----NGTWSSGLP 718
CG+P + NG + S GT + Y C +RL G LC+ +GTW P
Sbjct: 2 ASCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAP 61
Query: 719 TCK 721
C+
Sbjct: 62 KCE 64
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 53/153 (34%), Gaps = 33/153 (21%)
Query: 278 ANCGSPDRHVNTTF-VGTVSTKLGSTISYACPEGNMLVGSATRTC-----KEGFWTGVAP 331
A+CGSP +N + +G+ I Y+C L+G + C +G W AP
Sbjct: 2 ASCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAP 61
Query: 332 TCQYFQLQPMDVPNLVLYLFLSKLFRESYERLNVDCGKLEHIEHGTVTLETTRTTHGAVA 391
C+YF + P + + G +T HG
Sbjct: 62 KCEYFN-KYSSCPEPI-------------------------VPGGYKIRGSTPYRHGDSV 95
Query: 392 IYACHENYTLIGETRRVCGDGGKWNGTE-PQCL 423
+AC N+++ G C W T P C+
Sbjct: 96 TFACKTNFSMNGNKSVWCQANNMWGPTRLPTCV 128
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 805 DCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCME----DGSWSGDEPR 860
C P I NGR+ + + + Y C ++ IG C+ DG+W P+
Sbjct: 3 SCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAPK 62
Query: 861 CE 862
CE
Sbjct: 63 CE 64
>pdb|1GKN|A Chain A, Structure Determination And Rational Mutagenesis Reveal
Binding Surface Of Immune Adherence Receptor, Cr1 (Cd35)
Length = 128
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 7/116 (6%)
Query: 610 LIKTADSASSVATYKIGALVKYRCERGYKVEGEPLS-TCEDTGSWSGSVPECIYVDCGNP 668
L + ++ + + IG +KY C Y G P S TC D WS C C P
Sbjct: 13 LFAKLKTQTTASDFPIGTSLKYECRPEYY--GRPFSITCLDNLVWSSPKDVCKRKSCKTP 70
Query: 669 ETVPNGGFTLTSNATYYGTAVLYECDENYRLEGHARRLCLENGT---WSSGLPTCK 721
NG + ++ G+ + Y C +RL GH+ C+ +G WS+ P C+
Sbjct: 71 PDPVNGMVHVITDIQV-GSRITYSCTTGHRLIGHSSAECILSGNTAHWSTKPPICQ 125
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 11/78 (14%)
Query: 266 LDYLHW-----ICQHNPANCGSPDRHVNTTFVGTVSTKLGSTISYACPEGNMLVGSATRT 320
LD L W +C+ +C +P VN ++GS I+Y+C G+ L+G ++
Sbjct: 50 LDNLVWSSPKDVCKRK--SCKTPPDPVNGMVHVITDIQVGSRITYSCTTGHRLIGHSSAE 107
Query: 321 C----KEGFWTGVAPTCQ 334
C W+ P CQ
Sbjct: 108 CILSGNTAHWSTKPPICQ 125
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 475 PYGSISYLNETTYLGSEVLYSCSRNYRLVGHPRRSCLES---KVWSDTAPKCE 524
P + ++ +GS + YSC+ +RL+GH C+ S WS P C+
Sbjct: 73 PVNGMVHVITDIQVGSRITYSCTTGHRLIGHSSAECILSGNTAHWSTKPPICQ 125
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 784 YTRTCTKRGTWSGHIPTCKAIDCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGP 843
++ TC WS CK C P NG V ++ S + Y C ++ IG
Sbjct: 45 FSITCLDNLVWSSPKDVCKRKSCKTPPDPVNGMVHVITDIQV-GSRITYSCTTGHRLIGH 103
Query: 844 YLRKCMEDGS---WSGDEPRCEK 863
+C+ G+ WS P C++
Sbjct: 104 SSAECILSGNTAHWSTKPPICQR 126
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 6/99 (6%)
Query: 367 CGKLEHIEHGTVTLETTRTTH--GAVAIYACHENYTLIGETRRV-CGDGGKWNGTEPQCL 423
C +H + +TT + G Y C Y G + C D W+ + C
Sbjct: 6 CQAPDHFLFAKLKTQTTASDFPIGTSLKYECRPEY--YGRPFSITCLDNLVWSSPKDVCK 63
Query: 424 FDWCAEPPQ-ISGGIVTTSGRRTGSVATYSCEPGFILFG 461
C PP ++G + + + GS TYSC G L G
Sbjct: 64 RKSCKTPPDPVNGMVHVITDIQVGSRITYSCTTGHRLIG 102
>pdb|2XR5|A Chain A, Crystal Structure Of The Complex Of The Carbohydrate
Recognition Domain Of Human Dc-Sign With Pseudo
Dimannoside Mimic
Length = 166
Score = 46.2 bits (108), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 220 TWKWVDGEVVT---KPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQHN 276
TW+WVDG + K W + +PNN GE++C G WND C L WIC+ +
Sbjct: 88 TWQWVDGSPLLPSFKQYWNRGEPNNV-GEEDCAEFSGNG---WNDDKCNLAKF-WICKKS 142
Query: 277 PANC 280
A+C
Sbjct: 143 AASC 146
>pdb|2B6B|D Chain D, Cryo Em Structure Of Dengue Complexed With Crd Of Dc-Sign
Length = 175
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 220 TWKWVDGEVVT---KPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQHN 276
TW+WVDG + K W + +PNN GE++C G WND C L WIC+ +
Sbjct: 97 TWQWVDGSPLLPSFKQYWNRGEPNNV-GEEDCAEFSGNG---WNDDKCNLAKF-WICKKS 151
Query: 277 PANC 280
A+C
Sbjct: 152 AASC 155
>pdb|1K9I|A Chain A, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|B Chain B, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|C Chain C, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|D Chain D, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|E Chain E, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|F Chain F, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|G Chain G, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|H Chain H, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|I Chain I, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|J Chain J, Complex Of Dc-Sign And Glcnac2man3
Length = 156
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 220 TWKWVDGEVVT---KPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQHN 276
TW+WVDG + K W + +PNN GE++C G WND C L WIC+ +
Sbjct: 78 TWQWVDGSPLLPSFKQYWNRGEPNNV-GEEDCAEFSGNG---WNDDKCNLAKF-WICKKS 132
Query: 277 PANC 280
A+C
Sbjct: 133 AASC 136
>pdb|1SL4|A Chain A, Crystal Structure Of Dc-Sign Carbohydrate Recognition
Domain Complexed With Man4
pdb|2IT6|A Chain A, Crystal Structure Of Dcsign-Crd With Man2
Length = 155
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 220 TWKWVDGEVVT---KPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQHN 276
TW+WVDG + K W + +PNN GE++C G WND C L WIC+ +
Sbjct: 77 TWQWVDGSPLLPSFKQYWNRGEPNNV-GEEDCAEFSGNG---WNDDKCNLAKF-WICKKS 131
Query: 277 PANC 280
A+C
Sbjct: 132 AASC 135
>pdb|4B2S|A Chain A, Solution Structure Of Ccp Modules 11-12 Of Complement
Factor H
Length = 127
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 623 YKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECIYVD--CGNPETVPNGGFTLTS 680
Y +V+Y C + ++G C D G W+ ++P CI + CG+ + +G L+S
Sbjct: 29 YGHSEVVEYYCNPRFLMKGPNKIQCVD-GEWT-TLPVCIVEESTCGDIPELEHGWAQLSS 86
Query: 681 NATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTC 720
YYG +V + C E++ + GH C+ +G W+ LP C
Sbjct: 87 PPYYYGDSVEFNCSESFTMIGHRSITCI-HGVWTQ-LPQC 124
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 22/117 (18%)
Query: 427 CAEPPQISGGIVTTSGRRT---GSVATYSCEPGFILFGSNV-----------------NI 466
C PP++ G V + V Y C P F++ G N
Sbjct: 10 CGPPPELLNGNVKEKTKEEYGHSEVVEYYCNPRFLMKGPNKIQCVDGEWTTLPVCIVEES 69
Query: 467 DCGRLTAIPYGSISYLNETTYLGSEVLYSCSRNYRLVGHPRRSCLESKVWSDTAPKC 523
CG + + +G + Y G V ++CS ++ ++GH +C+ VW+ P+C
Sbjct: 70 TCGDIPELEHGWAQLSSPPYYYGDSVEFNCSESFTMIGHRSITCIHG-VWTQL-PQC 124
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 54/147 (36%), Gaps = 32/147 (21%)
Query: 279 NCGSPDRHVNTTFVGTVSTKLGST--ISYACPEGNMLVGSATRTCKEGFWTGVAPTCQYF 336
+CG P +N + G + + Y C ++ G C +G WT + P C
Sbjct: 9 SCGPPPELLNGNVKEKTKEEYGHSEVVEYYCNPRFLMKGPNKIQCVDGEWTTL-PVC--- 64
Query: 337 QLQPMDVPNLVLYLFLSKLFRESYERLNVDCGKLEHIEHGTVTLETTRTTHGAVAIYACH 396
+ ES CG + +EHG L + +G + C
Sbjct: 65 ------------------IVEES------TCGDIPELEHGWAQLSSPPYYYGDSVEFNCS 100
Query: 397 ENYTLIGETRRVCGDGGKWNGTEPQCL 423
E++T+IG R + G W PQC+
Sbjct: 101 ESFTMIGH-RSITCIHGVWTQL-PQCV 125
>pdb|1EGG|A Chain A, Structure Of A C-Type Carbohydrate-Recognition Domain
(Crd- 4) From The Macrophage Mannose Receptor
pdb|1EGG|B Chain B, Structure Of A C-Type Carbohydrate-Recognition Domain
(Crd- 4) From The Macrophage Mannose Receptor
pdb|1EGI|A Chain A, Structure Of A C-Type Carbohydrate-Recognition Domain
(Crd- 4) From The Macrophage Mannose Receptor
pdb|1EGI|B Chain B, Structure Of A C-Type Carbohydrate-Recognition Domain
(Crd- 4) From The Macrophage Mannose Receptor
Length = 147
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 205 LVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGC 264
L W+G G + + W DG V+ +W +PNNY + C L G WND+ C
Sbjct: 71 LFWLGLTY--GSPSEGFTWSDGSPVSYENWAYGEPNNYQNVEYCGELKGDPTMSWNDINC 128
Query: 265 KLDYLHWICQHNPANCGSPD 284
+ +WICQ PD
Sbjct: 129 E-HLNNWICQIQKGQTPKPD 147
>pdb|4GWI|A Chain A, His 62 Mutant Of The Lectin Binding Domain Of
Lectinolysin Complexed With Lewis Y
pdb|4GWJ|A Chain A, His 62 Mutant Of The Lectin Binding Domain Of
Lectinolysin Complexed With Lewis B
Length = 153
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 35/66 (53%)
Query: 21 NVALRRPTNQSSTIRGAPSSNANDGELTTVHDGKRCTETQKEVSPWWQVDLLRPYPIRIV 80
N+A + +QSST G ++ A DG + + + T T E + WWQVDL + + V
Sbjct: 11 NIARGKQASQSSTAHGGAATRAVDGNVDSDYGHHSVTHTNFEDNAWWQVDLGKTENVGKV 70
Query: 81 RITTRG 86
++ RG
Sbjct: 71 KLYNRG 76
>pdb|2XR6|A Chain A, Crystal Structure Of The Complex Of The Carbohydrate
Recognition Domain Of Human Dc-Sign With Pseudo
Trimannoside Mimic
Length = 170
Score = 42.7 bits (99), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 220 TWKWVDGEVVT---KPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQHN 276
TW+WVDG + K W + +PNN GE++C G WND C L WIC+ +
Sbjct: 92 TWQWVDGSPLLPSFKQYWNRGEPNNV-GEEDCAEFSGNG---WNDDKCNLAKF-WICKKS 146
Query: 277 PAN 279
A+
Sbjct: 147 AAS 149
>pdb|3LE0|A Chain A, Lectin Domain Of Lectinolysin Complexed With Glycerol
pdb|3LEG|A Chain A, Lectin Domain Of Lectinolysin Complexed With Lewis Y
Antigen
pdb|3LEI|A Chain A, Lectin Domain Of Lectinolysin Complexed With Fucose
pdb|3LEK|A Chain A, Lectin Domain Of Lectinolysin Complexed With Lewis B
Antigen
Length = 153
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 35/66 (53%)
Query: 21 NVALRRPTNQSSTIRGAPSSNANDGELTTVHDGKRCTETQKEVSPWWQVDLLRPYPIRIV 80
N+A + +QSST G ++ A DG + + + T T E + WWQVDL + + V
Sbjct: 11 NIARGKQASQSSTAYGGAATRAVDGNVDSDYGHHSVTHTNFEDNAWWQVDLGKTENVGKV 70
Query: 81 RITTRG 86
++ RG
Sbjct: 71 KLYNRG 76
>pdb|2A55|A Chain A, Solution Structure Of The Two N-Terminal Ccp Modules Of
C4b- Binding Protein (C4bp) Alpha-Chain
Length = 133
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 623 YKIGALVKYRCERGY-KVEGEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGFTLTSN 681
+K G +KY C GY + TC G W + CIY C +P + NG + ++
Sbjct: 24 FKTGTTLKYTCLPGYVRSHSTQTLTCNSDGEWVYNT-FCIYKRCRHPGELRNGQVEIKTD 82
Query: 682 ATYYGTAVLYECDENYRLEGHARRLC--LENGT-WSSGLPTCK 721
+ +G+ + + C E + L G C + G WS LP C+
Sbjct: 83 LS-FGSQIEFSCSEGFFLIGSTTSRCEVQDRGVGWSHPLPQCE 124
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 748 KTPKKSLTRPALSCLPGKRFYYHRGIFRLQNTQKVSYTRTCTKRGTWSGHIPTCKAIDCS 807
+T K+ T +CLPG R +TQ T TC G W + C C
Sbjct: 21 ETRFKTGTTLKYTCLPG--------YVRSHSTQ----TLTCNSDGEWV-YNTFCIYKRCR 67
Query: 808 HPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKC-MEDG--SWSGDEPRCE 862
HPG + NG+V I ++ S +E+ C + IG +C ++D WS P+CE
Sbjct: 68 HPGELRNGQVEIKTD-LSFGSQIEFSCSEGFFLIGSTTSRCEVQDRGVGWSHPLPQCE 124
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 44/122 (36%), Gaps = 24/122 (19%)
Query: 427 CAEPPQISGG-----IVTTSGRRTGSVATYSCEPGFILFGSNVNIDCGRLTAIPYGSISY 481
C PP +S +T + +TG+ Y+C PG++ S + C Y +
Sbjct: 3 CGPPPTLSFAAPMDITLTETRFKTGTTLKYTCLPGYVRSHSTQTLTCNSDGEWVYNTFCI 62
Query: 482 LNETTY----------------LGSEVLYSCSRNYRLVGHPRRSCLESKV---WSDTAPK 522
+ GS++ +SCS + L+G C WS P+
Sbjct: 63 YKRCRHPGELRNGQVEIKTDLSFGSQIEFSCSEGFFLIGSTTSRCEVQDRGVGWSHPLPQ 122
Query: 523 CE 524
CE
Sbjct: 123 CE 124
>pdb|1SL5|A Chain A, Crystal Structure Of Dc-Sign Carbohydrate Recognition
Domain Complexed With Lnfp Iii (Dextra L504).
pdb|2IT5|A Chain A, Crystal Structure Of Dcsign-crd With Man6
Length = 139
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 220 TWKWVDGEVVT---KPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQHN 276
TW+WVDG + K W + +PNN GE++C G WND C L WIC+ +
Sbjct: 77 TWQWVDGSPLLPSFKQYWNRGEPNNV-GEEDCAEFSGNG---WNDDKCNLAKF-WICKKS 131
Query: 277 PANC 280
A+C
Sbjct: 132 AASC 135
>pdb|1RTM|1 Chain 1, Trimeric Structure Of A C-Type Mannose-Binding Protein
pdb|1RTM|2 Chain 2, Trimeric Structure Of A C-Type Mannose-Binding Protein
pdb|1RTM|3 Chain 3, Trimeric Structure Of A C-Type Mannose-Binding Protein
pdb|1KWT|A Chain A, Rat Mannose Binding Protein A (Native, Mpd)
pdb|1KWT|B Chain B, Rat Mannose Binding Protein A (Native, Mpd)
pdb|1KWT|C Chain C, Rat Mannose Binding Protein A (Native, Mpd)
pdb|1KWU|A Chain A, Rat Mannose Binding Protein A Complexed With A-Me-Man
pdb|1KWU|B Chain B, Rat Mannose Binding Protein A Complexed With A-Me-Man
pdb|1KWU|C Chain C, Rat Mannose Binding Protein A Complexed With A-Me-Man
pdb|1KWV|A Chain A, Rat Mannose Binding Protein A Complexed With A-Me-Glcnac
pdb|1KWV|B Chain B, Rat Mannose Binding Protein A Complexed With A-Me-Glcnac
pdb|1KWV|C Chain C, Rat Mannose Binding Protein A Complexed With A-Me-Glcnac
pdb|1KWW|A Chain A, Rat Mannose Protein A Complexed With A-Me-Fuc.
pdb|1KWW|B Chain B, Rat Mannose Protein A Complexed With A-Me-Fuc.
pdb|1KWW|C Chain C, Rat Mannose Protein A Complexed With A-Me-Fuc.
pdb|1KWX|A Chain A, Rat Mannose Protein A Complexed With B-Me-Fuc.
pdb|1KWX|B Chain B, Rat Mannose Protein A Complexed With B-Me-Fuc.
pdb|1KWX|C Chain C, Rat Mannose Protein A Complexed With B-Me-Fuc.
pdb|1KWY|A Chain A, Rat Mannose Protein A Complexed With Man-A13-Man.
pdb|1KWY|B Chain B, Rat Mannose Protein A Complexed With Man-A13-Man.
pdb|1KWY|C Chain C, Rat Mannose Protein A Complexed With Man-A13-Man.
pdb|1KX1|A Chain A, Rat Mannose Protein A Complexed With Man6-Glcnac2-Asn
pdb|1KX1|B Chain B, Rat Mannose Protein A Complexed With Man6-Glcnac2-Asn
pdb|1KX1|C Chain C, Rat Mannose Protein A Complexed With Man6-Glcnac2-Asn
pdb|1KX1|D Chain D, Rat Mannose Protein A Complexed With Man6-Glcnac2-Asn
pdb|1KX1|E Chain E, Rat Mannose Protein A Complexed With Man6-Glcnac2-Asn
pdb|1KX1|F Chain F, Rat Mannose Protein A Complexed With Man6-Glcnac2-Asn
Length = 149
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 216 ITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCV-VLDGGRGWLWNDVGCK 265
+T + +V G +T +W KD+PN++ ++CV ++D G LWND+ C+
Sbjct: 91 VTEGQFMYVTGGRLTYSNWKKDEPNDHGSGEDCVTIVDNG---LWNDISCQ 138
>pdb|2KMB|1 Chain 1, Complex Of 3'-Neuac-Lewis-X With A Selectin-Like Mutant Of
Mannose- Binding Protein A
pdb|2KMB|2 Chain 2, Complex Of 3'-Neuac-Lewis-X With A Selectin-Like Mutant Of
Mannose- Binding Protein A
pdb|2KMB|3 Chain 3, Complex Of 3'-Neuac-Lewis-X With A Selectin-Like Mutant Of
Mannose- Binding Protein A
pdb|3KMB|1 Chain 1, Complex Of 3'-Sulfo-Lewis-X With A Selectin-Like Mutant Of
Mannose- Binding Protein A
pdb|3KMB|2 Chain 2, Complex Of 3'-Sulfo-Lewis-X With A Selectin-Like Mutant Of
Mannose- Binding Protein A
pdb|3KMB|3 Chain 3, Complex Of 3'-Sulfo-Lewis-X With A Selectin-Like Mutant Of
Mannose- Binding Protein A
pdb|4KMB|1 Chain 1, Complex Of 4'-Sulfo-Lewis-X With A Selectin-Like Mutant Of
Mannose-Binding Protein A
pdb|4KMB|2 Chain 2, Complex Of 4'-Sulfo-Lewis-X With A Selectin-Like Mutant Of
Mannose-Binding Protein A
pdb|4KMB|3 Chain 3, Complex Of 4'-Sulfo-Lewis-X With A Selectin-Like Mutant Of
Mannose-Binding Protein A
pdb|1KMB|1 Chain 1, Selectin-Like Mutant Of Mannose-Binding Protein A
pdb|1KMB|2 Chain 2, Selectin-Like Mutant Of Mannose-Binding Protein A
pdb|1KMB|3 Chain 3, Selectin-Like Mutant Of Mannose-Binding Protein A
Length = 149
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 216 ITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCV-VLDGGRGWLWNDVGCK 265
+T + +V G +T +W KD+PN++ ++CV ++D G LWND+ C+
Sbjct: 91 VTEGQFMYVTGGRLTYSNWKKDEPNDHGSGEDCVTIVDNG---LWNDISCQ 138
>pdb|1BUU|A Chain A, One Ho3+ Form Of Rat Mannose-Binding Protein A
Length = 168
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 216 ITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCV-VLDGGRGWLWNDVGCK 265
+T + +V G +T +W KD+PN++ ++CV ++D G LWND+ C+
Sbjct: 110 VTEGQFMYVTGGRLTYSNWKKDEPNDHGSGEDCVTIVDNG---LWNDISCQ 157
>pdb|1JZN|A Chain A, Crystal Structure Of A Galactose-Specific C-Type Lectin
pdb|1JZN|B Chain B, Crystal Structure Of A Galactose-Specific C-Type Lectin
pdb|1JZN|C Chain C, Crystal Structure Of A Galactose-Specific C-Type Lectin
pdb|1JZN|D Chain D, Crystal Structure Of A Galactose-Specific C-Type Lectin
pdb|1JZN|E Chain E, Crystal Structure Of A Galactose-Specific C-Type Lectin
pdb|1MUQ|A Chain A, X-Ray Crystal Structure Of Rattlesnake Venom Complexed
With Thiodigalactoside
pdb|1MUQ|B Chain B, X-Ray Crystal Structure Of Rattlesnake Venom Complexed
With Thiodigalactoside
pdb|1MUQ|C Chain C, X-Ray Crystal Structure Of Rattlesnake Venom Complexed
With Thiodigalactoside
pdb|1MUQ|D Chain D, X-Ray Crystal Structure Of Rattlesnake Venom Complexed
With Thiodigalactoside
pdb|1MUQ|E Chain E, X-Ray Crystal Structure Of Rattlesnake Venom Complexed
With Thiodigalactoside
Length = 135
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 206 VWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGW-LWNDVGC 264
VWIG + +W+W D +W K+QP++Y ++ CV L G+ LWND C
Sbjct: 66 VWIGLRDKK--KDFSWEWTDRSCTDYLTWDKNQPDHYQNKEFCVELVSLTGYRLWNDQVC 123
Query: 265 K 265
+
Sbjct: 124 E 124
>pdb|1KX0|A Chain A, Rat Mannose Protein A (H189v I207v) Complexed With
Man-A13-Man
pdb|1KX0|B Chain B, Rat Mannose Protein A (H189v I207v) Complexed With
Man-A13-Man
pdb|1KX0|C Chain C, Rat Mannose Protein A (H189v I207v) Complexed With
Man-A13-Man
Length = 149
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 216 ITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCV-VLDGGRGWLWNDVGCK 265
+T + +V G +T +W KD+PN+ ++CV ++D G LWNDV C+
Sbjct: 91 VTEGQFMYVTGGRLTYSNWKKDEPNDVGSGEDCVTIVDNG---LWNDVSCQ 138
>pdb|2J22|A Chain A, Structure Of A Streptococcus Pneumoniae Fucose Binding
Module, Spx-3
Length = 148
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 42/88 (47%)
Query: 20 TNVALRRPTNQSSTIRGAPSSNANDGELTTVHDGKRCTETQKEVSPWWQVDLLRPYPIRI 79
+N+AL + T QSST S A DG + T T+++ WW++DL + +
Sbjct: 13 SNIALTKETRQSSTDYNGFSRLAVDGNKNGDYGHHSVTHTKEDSPSWWEIDLAQTEELEK 72
Query: 80 VRITTRGCCGHQPLQDLEIRVGNSTDLQ 107
+ I R Q L + +I + +S D +
Sbjct: 73 LIIYNRTDAEIQRLSNFDIIIYDSNDYE 100
>pdb|1VVC|A Chain A, C-Terminal Half Of Vaccinia Virus Complement Control
Protein, Nmr, Minimized Average Structure
pdb|1VVD|A Chain A, C-Terminal Half Of Vaccinia Virus Complement Control
Protein, Nmr, 21 Structures
pdb|1VVE|A Chain A, C-Terminal Half Of Vaccinia Virus Complement Control
Protein, Nmr, 21 Structures
Length = 118
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 623 YKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGFTLTSNA 682
Y G++V Y C GY + G C G WS P C V C +P T+ NG +
Sbjct: 21 YTDGSVVTYSCNSGYSLIGNSGVLCSG-GEWS-DPPTCQIVKCPHP-TISNGYLSSGFKR 77
Query: 683 TY-YGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTC 720
+Y Y V ++C Y+L G + C TW LP C
Sbjct: 78 SYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTWKPELPKC 116
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 365 VDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCLF 424
V C I +G T G+V Y+C+ Y+LIG + +C GG+W+ P C
Sbjct: 1 VKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIGNSGVLC-SGGEWS-DPPTCQI 58
Query: 425 DWCAEPPQISGGIVTTSGRRTGSV---ATYSCEPGFIL 459
C P IS G +++ +R+ S + C+ G+ L
Sbjct: 59 VKCPH-PTISNGYLSSGFKRSYSYNDNVDFKCKYGYKL 95
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 300 GSTISYACPEGNMLVGSATRTCKEGFWTGVAPTCQYFQLQPMDVPNLVLYLFLSKLFRES 359
GS ++Y+C G L+G++ C G W+ PTCQ + + N +LS F+ S
Sbjct: 24 GSVVTYSCNSGYSLIGNSGVLCSGGEWSD-PPTCQIVKCPHPTISN----GYLSSGFKRS 78
Query: 360 YE-RLNVD 366
Y NVD
Sbjct: 79 YSYNDNVD 86
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 792 GTWSGHIPTCKAIDCSHPGSIDNGRVII-MNQTTTYNSAVEYHCVPQYQRIGPYLRKCME 850
G WS PTC+ + C HP +I NG + ++ +YN V++ C Y+ G C
Sbjct: 48 GEWS-DPPTCQIVKCPHP-TISNGYLSSGFKRSYSYNDNVDFKCKYGYKLSGSSSSTCSP 105
Query: 851 DGSWSGDEPRC 861
+W + P+C
Sbjct: 106 GNTWKPELPKC 116
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 44/115 (38%), Gaps = 19/115 (16%)
Query: 427 CAEPPQISGGIVT--TSGRRTGSVATYSCEPGFILFGSNVNIDCG----------RLTAI 474
C PP IS G GSV TYSC G+ L G N + C ++
Sbjct: 3 CQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIG-NSGVLCSGGEWSDPPTCQIVKC 61
Query: 475 PYGSIS--YLNE----TTYLGSEVLYSCSRNYRLVGHPRRSCLESKVWSDTAPKC 523
P+ +IS YL+ + V + C Y+L G +C W PKC
Sbjct: 62 PHPTISNGYLSSGFKRSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTWKPELPKC 116
>pdb|2LS8|A Chain A, Solution Structure Of Human C-Type Lectin Domain Family 4
Member D
Length = 156
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 221 WKWVDGEVVT--KPSWGKDQPNNYNGEQNCVVLDGGRG-WLWNDVGCKLD 267
W+WVD + W K++P+N GE NCVVL + W WNDV C +
Sbjct: 73 WRWVDQTPFNPRRVFWHKNEPDNSQGE-NCVVLVYNQDKWAWNDVPCNFE 121
>pdb|1KWZ|A Chain A, Rat Mannose Protein A (H189v) Complexed With Man-A13-Man
pdb|1KWZ|B Chain B, Rat Mannose Protein A (H189v) Complexed With Man-A13-Man
pdb|1KWZ|C Chain C, Rat Mannose Protein A (H189v) Complexed With Man-A13-Man
Length = 149
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 216 ITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCV-VLDGGRGWLWNDVGCK 265
+T + +V G +T +W KD+PN+ ++CV ++D G LWND+ C+
Sbjct: 91 VTEGQFMYVTGGRLTYSNWKKDEPNDVGSGEDCVTIVDNG---LWNDISCQ 138
>pdb|2J1R|A Chain A, Structure Of A Streptococcus Pneumoniae Fucose Binding
Module
pdb|2J1R|B Chain B, Structure Of A Streptococcus Pneumoniae Fucose Binding
Module
pdb|2J1S|A Chain A, Structure Of A Streptococcus Pneumoniae Fucose Binding
Module In Complex With Fucose
pdb|2J1S|B Chain B, Structure Of A Streptococcus Pneumoniae Fucose Binding
Module In Complex With Fucose
pdb|2J1T|A Chain A, Structure Of A Streptococcus Pneumoniae Fucose Binding
Module In Complex With The Lewis Y Antigen
pdb|2J1T|B Chain B, Structure Of A Streptococcus Pneumoniae Fucose Binding
Module In Complex With The Lewis Y Antigen
pdb|2J1U|A Chain A, Structure Of A Streptococcus Pneumoniae Fucose Binding
Module In Complex With The Blood Group
A-Tetrasaccharide
pdb|2J1U|B Chain B, Structure Of A Streptococcus Pneumoniae Fucose Binding
Module In Complex With The Blood Group
A-Tetrasaccharide
pdb|2J1V|A Chain A, Structure Of A Streptococcus Pneumoniae Fucose Binding
Module In Complex With The Blood Group H-Trisaccharide
pdb|2J1V|B Chain B, Structure Of A Streptococcus Pneumoniae Fucose Binding
Module In Complex With The Blood Group H-Trisaccharide
Length = 151
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 36/78 (46%)
Query: 21 NVALRRPTNQSSTIRGAPSSNANDGELTTVHDGKRCTETQKEVSPWWQVDLLRPYPIRIV 80
N+A +PT QSS + A DG + T T+ + WW+VDL + + +V
Sbjct: 17 NIAYAKPTTQSSVDYNGDPNRAVDGNRNGNFNSGSVTHTRADNPSWWEVDLKKMDKVGLV 76
Query: 81 RITTRGCCGHQPLQDLEI 98
+I R Q L + ++
Sbjct: 77 KIYNRTDAETQRLSNFDV 94
>pdb|1MSB|A Chain A, Structure Of The Calcium-dependent Lectin Domain From A
Rat Mannose-binding Protein Determined By Mad Phasing
pdb|1MSB|B Chain B, Structure Of The Calcium-dependent Lectin Domain From A
Rat Mannose-binding Protein Determined By Mad Phasing
pdb|2MSB|A Chain A, Structure Of A C-type Mannose-binding Protein Complexed
With An Oligosaccharide
pdb|2MSB|B Chain B, Structure Of A C-type Mannose-binding Protein Complexed
With An Oligosaccharide
pdb|1YTT|A Chain A, Yb Substituted Subtilisin Fragment Of Mannose Binding
Protein-a (sub-mbp-a), Mad Structure At 110k
pdb|1YTT|B Chain B, Yb Substituted Subtilisin Fragment Of Mannose Binding
Protein-a (sub-mbp-a), Mad Structure At 110k
Length = 115
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 216 ITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCV-VLDGGRGWLWNDVGCKLDY 268
+T + +V G +T +W KD+PN++ ++CV ++D G LWND+ C+ +
Sbjct: 57 VTEGQFMYVTGGRLTYSNWKKDEPNDHGSGEDCVTIVDNG---LWNDISCQASH 107
>pdb|4B2R|A Chain A, Solution Structure Of Ccp Modules 10-11 Of Complement
Factor H
Length = 126
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 623 YKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECI--YVDCGNPETVPNGGFTLTS 680
YK+G ++K+ C+ G+ + G C G S +P C CG P + NG +
Sbjct: 26 YKVGEVLKFSCKPGFTIVGPNSVQCYHFG-LSPDLPICKEQVQSCGPPPELLNGNVKEKT 84
Query: 681 NATY-YGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTC 720
Y + V Y C+ + ++G + C+ +G W++ LP C
Sbjct: 85 KEEYGHSEVVEYYCNPRFLMKGPNKIQCV-DGEWTT-LPVC 123
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 795 SGHIPTCK--AIDCSHPGSIDNGRVI-IMNQTTTYNSAVEYHCVPQYQRIGPYLRKCMED 851
S +P CK C P + NG V + ++ VEY+C P++ GP +C+ D
Sbjct: 56 SPDLPICKEQVQSCGPPPELLNGNVKEKTKEEYGHSEVVEYYCNPRFLMKGPNKIQCV-D 114
Query: 852 GSWS 855
G W+
Sbjct: 115 GEWT 118
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 24/117 (20%)
Query: 429 EPPQISGGIVTTSGR---RTGSVATYSCEPGFILFGSN--------VNID---------- 467
E P+I +V + + G V +SC+PGF + G N ++ D
Sbjct: 9 ELPKIDVHLVPDRKKDQYKVGEVLKFSCKPGFTIVGPNSVQCYHFGLSPDLPICKEQVQS 68
Query: 468 CGRLTAIPYGSISYLNETTYLGSEVL-YSCSRNYRLVGHPRRSCLESKVWSDTAPKC 523
CG + G++ + Y SEV+ Y C+ + + G + C++ + W+ T P C
Sbjct: 69 CGPPPELLNGNVKEKTKEEYGHSEVVEYYCNPRFLMKGPNKIQCVDGE-WT-TLPVC 123
>pdb|1SL6|A Chain A, Crystal Structure Of A Fragment Of Dc-signr (containg The
Carbohydrate Recognition Domain And Two Repeats Of The
Neck) Complexed With Lewis-x.
pdb|1SL6|B Chain B, Crystal Structure Of A Fragment Of Dc-signr (containg The
Carbohydrate Recognition Domain And Two Repeats Of The
Neck) Complexed With Lewis-x.
pdb|1SL6|C Chain C, Crystal Structure Of A Fragment Of Dc-signr (containg The
Carbohydrate Recognition Domain And Two Repeats Of The
Neck) Complexed With Lewis-x.
pdb|1SL6|D Chain D, Crystal Structure Of A Fragment Of Dc-signr (containg The
Carbohydrate Recognition Domain And Two Repeats Of The
Neck) Complexed With Lewis-x.
pdb|1SL6|E Chain E, Crystal Structure Of A Fragment Of Dc-signr (containg The
Carbohydrate Recognition Domain And Two Repeats Of The
Neck) Complexed With Lewis-x.
pdb|1SL6|F Chain F, Crystal Structure Of A Fragment Of Dc-signr (containg The
Carbohydrate Recognition Domain And Two Repeats Of The
Neck) Complexed With Lewis-x.
pdb|1XAR|A Chain A, Crystal Structure Of A Fragment Of Dc-Signr (Containing
The Carbohydrate Recognition Domain And Two Repeats Of
The Neck).
pdb|1XAR|B Chain B, Crystal Structure Of A Fragment Of Dc-Signr (Containing
The Carbohydrate Recognition Domain And Two Repeats Of
The Neck)
Length = 184
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 11/65 (16%)
Query: 220 TWKWVDGEVVTKPS----WGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQH 275
TW+WVDG ++ PS W +PNN +G ++C G WND C +D +WIC+
Sbjct: 123 TWQWVDGSPLS-PSFQRYWNSGEPNN-SGNEDCAEFSGSG---WNDNRCDVDN-YWICKK 176
Query: 276 NPANC 280
PA C
Sbjct: 177 -PAAC 180
>pdb|1XPH|A Chain A, Structure Of Dc-Signr And A Portion Of Repeat Domain 8
Length = 150
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Query: 220 TWKWVDGEVVT---KPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQHN 276
TW+WVDG ++ + W +PNN +G ++C G WND C +D +WIC+
Sbjct: 89 TWQWVDGSPLSPSFQRYWNSGEPNN-SGNEDCAEFSGSG---WNDNRCDVDN-YWICKK- 142
Query: 277 PANC 280
PA C
Sbjct: 143 PAAC 146
>pdb|4AQB|A Chain A, Mbl-Ficolin Associated Protein-1, Map-1 Aka Map44
Length = 361
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 668 PETVP--NGGFTLTSNATYYGTAVLYECDENYRLEGHARRL------CLENGTWSSGLPT 719
PE P +G + ++ VL CD Y++ + CL++GTWS+ +PT
Sbjct: 283 PELQPPVHGKIEPSQAKYFFKDQVLVSCDTGYKVLKDNVEMDTFQIECLKDGTWSNKIPT 342
Query: 720 CKGNE 724
CK NE
Sbjct: 343 CKKNE 347
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 778 NTQKVSYTRTCTKRGTWSGHIPTCK 802
N + ++ C K GTWS IPTCK
Sbjct: 320 NVEMDTFQIECLKDGTWSNKIPTCK 344
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 14/15 (93%)
Query: 731 CLENGTWSSGLPTCK 745
CL++GTWS+ +PTCK
Sbjct: 330 CLKDGTWSNKIPTCK 344
>pdb|1BCJ|1 Chain 1, Mannose-Binding Protein-A Mutant (Qpdwghv) Complexed With
N- Acetyl-D-Galactosamine
pdb|1BCJ|2 Chain 2, Mannose-Binding Protein-A Mutant (Qpdwghv) Complexed With
N- Acetyl-D-Galactosamine
pdb|1BCJ|3 Chain 3, Mannose-Binding Protein-A Mutant (Qpdwghv) Complexed With
N- Acetyl-D-Galactosamine
Length = 154
Score = 37.7 bits (86), Expect = 0.026, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 9/56 (16%)
Query: 216 ITARTWKWVDGEVVTKPSWGKDQPNNYNGE-----QNCV-VLDGGRGWLWNDVGCK 265
+T + +V G +T +W KDQP+++ G ++CV ++D G LWND+ C+
Sbjct: 91 VTEGQFMYVTGGRLTYSNWKKDQPDDWYGHGLGGGEDCVHIVDNG---LWNDISCQ 143
>pdb|1CKL|A Chain A, N-Terminal Two Domains Of Human Cd46 (Membrane Cofactor
Protein, Mcp)
pdb|1CKL|B Chain B, N-Terminal Two Domains Of Human Cd46 (Membrane Cofactor
Protein, Mcp)
pdb|1CKL|C Chain C, N-Terminal Two Domains Of Human Cd46 (Membrane Cofactor
Protein, Mcp)
pdb|1CKL|D Chain D, N-Terminal Two Domains Of Human Cd46 (Membrane Cofactor
Protein, Mcp)
pdb|1CKL|E Chain E, N-Terminal Two Domains Of Human Cd46 (Membrane Cofactor
Protein, Mcp)
pdb|1CKL|F Chain F, N-Terminal Two Domains Of Human Cd46 (Membrane Cofactor
Protein, Mcp)
pdb|2O39|C Chain C, Human Adenovirus Type 11 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (membrane Cofactor Protein, Mcp)
pdb|2O39|D Chain D, Human Adenovirus Type 11 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (membrane Cofactor Protein, Mcp)
pdb|3INB|C Chain C, Structure Of The Measles Virus Hemagglutinin Bound To The
Cd46 Receptor
pdb|3INB|D Chain D, Structure Of The Measles Virus Hemagglutinin Bound To The
Cd46 Receptor
pdb|3L89|M Chain M, Human Adenovirus Type 21 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|N Chain N, Human Adenovirus Type 21 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|O Chain O, Human Adenovirus Type 21 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|P Chain P, Human Adenovirus Type 21 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|Q Chain Q, Human Adenovirus Type 21 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|R Chain R, Human Adenovirus Type 21 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|S Chain S, Human Adenovirus Type 21 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|T Chain T, Human Adenovirus Type 21 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|U Chain U, Human Adenovirus Type 21 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|V Chain V, Human Adenovirus Type 21 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|W Chain W, Human Adenovirus Type 21 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|X Chain X, Human Adenovirus Type 21 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
Length = 126
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
Query: 623 YKIGALVKYRCERGYKVEGEPLST---CEDTGSWSGSVPECIYVDCGNPETVPNGGFTLT 679
Y+IG V Y+C++GY PL+T C+ +W + Y + P G +
Sbjct: 20 YEIGERVDYKCKKGY-FYIPPLATHTICDRNHTWLPVSDDACYRETCPYIRDPLNGQAVP 78
Query: 680 SNATY-YGTAVLYECDENYRLEGHARRLCLENGT---WSSGLPTCK 721
+N TY +G + + C+E Y L G C G+ WS P C+
Sbjct: 79 ANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPPICE 124
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 594 HSILSVTGNDRLYGRTLIKTADSASSVA-----TYKIGALVKYRCERGYKVEGEPLSTCE 648
H+ L V+ +D Y T D + A TY+ G + + C GY + GE + CE
Sbjct: 50 HTWLPVS-DDACYRETCPYIRDPLNGQAVPANGTYEFGYQMHFICNEGYYLIGEEILYCE 108
Query: 649 DTGS---WSGSVPEC 660
GS WSG P C
Sbjct: 109 LKGSVAIWSGKPPIC 123
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 814 NGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCMEDGS---WSGDEPRCEK 863
NG+ + N T + + + C Y IG + C GS WSG P CEK
Sbjct: 73 NGQAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPPICEK 125
>pdb|1BCH|1 Chain 1, Mannose-Binding Protein-A Mutant (Qpdwgh) Complexed With
N- Acetyl-D-Galactosamine
pdb|1BCH|2 Chain 2, Mannose-Binding Protein-A Mutant (Qpdwgh) Complexed With
N- Acetyl-D-Galactosamine
pdb|1BCH|3 Chain 3, Mannose-Binding Protein-A Mutant (Qpdwgh) Complexed With
N- Acetyl-D-Galactosamine
Length = 154
Score = 37.7 bits (86), Expect = 0.028, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 9/56 (16%)
Query: 216 ITARTWKWVDGEVVTKPSWGKDQPNNYNGE-----QNCV-VLDGGRGWLWNDVGCK 265
+T + +V G +T +W KDQP+++ G ++CV ++D G LWND+ C+
Sbjct: 91 VTEGQFMYVTGGRLTYSNWKKDQPDDWYGHGLGGGEDCVHIVDNG---LWNDISCQ 143
>pdb|2VUV|A Chain A, Crystal Structure Of Codakine At 1.3a Resolution
pdb|2VUZ|A Chain A, Crystal Structure Of Codakine In Complex With Biantennary
Nonasaccharide At 1.7a Resolution
Length = 129
Score = 37.7 bits (86), Expect = 0.031, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
Query: 207 WIGAQKDPGITARTWKWVD-GEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWL-WNDVGC 264
W+G QK G W+W G WG ++PNN G ++C+ + WL WND+ C
Sbjct: 65 WLGGQKVGG----AWQWSSSGAAFDYLRWGXNEPNNSGGNEDCLHYN----WLSWNDLRC 116
Query: 265 KLDYLHWICQ 274
++CQ
Sbjct: 117 HYQ-ASYLCQ 125
>pdb|1AFA|1 Chain 1, Structural Basis Of Galactose Recognition In C-Type Animal
Lectins
pdb|1AFA|2 Chain 2, Structural Basis Of Galactose Recognition In C-Type Animal
Lectins
pdb|1AFA|3 Chain 3, Structural Basis Of Galactose Recognition In C-Type Animal
Lectins
pdb|1AFB|1 Chain 1, Structural Basis Of Galactose Recognition In C-Type Animal
Lectins
pdb|1AFB|2 Chain 2, Structural Basis Of Galactose Recognition In C-Type Animal
Lectins
pdb|1AFB|3 Chain 3, Structural Basis Of Galactose Recognition In C-Type Animal
Lectins
pdb|1AFD|1 Chain 1, Structural Basis Of Galactose Recognition In C-Type Animal
Lectins
pdb|1AFD|2 Chain 2, Structural Basis Of Galactose Recognition In C-Type Animal
Lectins
pdb|1AFD|3 Chain 3, Structural Basis Of Galactose Recognition In C-Type Animal
Lectins
Length = 154
Score = 37.7 bits (86), Expect = 0.032, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 9/56 (16%)
Query: 216 ITARTWKWVDGEVVTKPSWGKDQPNNYNGE-----QNCV-VLDGGRGWLWNDVGCK 265
+T + +V G +T +W KDQP+++ G ++CV ++D G LWND+ C+
Sbjct: 91 VTEGQFMYVTGGRLTYSNWKKDQPDDWYGHGLGGGEDCVTIVDNG---LWNDISCQ 143
>pdb|1K9J|A Chain A, Complex Of Dc-signr And Glcnac2man3
pdb|1K9J|B Chain B, Complex Of Dc-signr And Glcnac2man3
Length = 139
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Query: 220 TWKWVDGEVVT---KPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQHN 276
TW+WVDG ++ + W +PNN +G ++C G WND C +D +WIC+
Sbjct: 78 TWQWVDGSPLSPSFQRYWNSGEPNN-SGNEDCAEFSGSG---WNDNRCDVDN-YWICKK- 131
Query: 277 PANC 280
PA C
Sbjct: 132 PAAC 135
>pdb|2YRA|A Chain A, Solution Structure Of The Zinc Finger Domains (1-87) From
Human F-Box Only Protein
Length = 74
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 24/57 (42%)
Query: 812 IDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCMEDGSWSGDEPRCEKRFNSG 868
I NG + + + Y C P Y +G C D SWS D P CEK SG
Sbjct: 14 IQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTLTCQWDLSWSSDPPFCEKTEESG 70
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 671 VPNGGFTLTSNATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTCKGNE 724
+ NG T + G + Y+CD Y + G C + +WSS P C+ E
Sbjct: 14 IQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTLTCQWDLSWSSDPPFCEKTE 67
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 626 GALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPEC 660
GA + Y+C+ GY + G TC+ SWS P C
Sbjct: 29 GARITYQCDPGYDIVGSDTLTCQWDLSWSSDPPFC 63
>pdb|2XQW|C Chain C, Structure Of Factor H Domains 19-20 In Complex With
Complement C3d
Length = 133
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 665 CGNPETVPNGGFTLTSNATYY-GTAVLYECDENYRLEGHARRLCLENGTWS 714
CG P + NGG T + Y ++V Y+C Y+LEG+ R C NG WS
Sbjct: 11 CGPPPPIDNGGITSFPLSVYAPASSVEYQCANLYQLEGNKRITC-RNGQWS 60
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 11/108 (10%)
Query: 620 VATYKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGFTL- 678
++ Y + V+Y+C Y++EG TC + G WS P+C++ + E + N L
Sbjct: 27 LSVYAPASSVEYQCANLYQLEGNKRITCRN-GQWS-EPPKCLHPCVISREIMENYNIALR 84
Query: 679 -TSNATYY---GTAVLYECDENYRLEGHARRLCLENGTWSSGL--PTC 720
T+ Y G +V + C YRL +R L W L PTC
Sbjct: 85 WTAKQKLYSRTGESVEFVCKRGYRLS--SRSHTLRTTCWDGKLEYPTC 130
>pdb|2G7I|A Chain A, Structure Of Human Complement Factor H Carboxyl Terminal
Domains 19- 20: A Basis For Atypical Hemolytic Uremic
Syndrome
Length = 125
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 620 VATYKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGFTL- 678
++ Y + V+Y+C+ Y++EG TC + G WS P+C++ + E + N L
Sbjct: 19 LSVYAPASSVEYQCQNLYQLEGNKRITCRN-GQWS-EPPKCLHPCVISREIMENYNIALR 76
Query: 679 -TSNATYY---GTAVLYECDENYRLEGHARRLCLENGTWSSGL--PTC 720
T+ Y G +V + C YRL +R L W L PTC
Sbjct: 77 WTAKQKLYSRTGESVEFVCKRGYRLS--SRSHTLRTTCWDGKLEYPTC 122
>pdb|2KMS|A Chain A, Combined High- And Low-Resolution Techniques Reveal
Compact Structure In Central Portion Of Factor H Despite
Long Inter-Modular Linkers
Length = 115
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 665 CGNPETVPNGGFTLTSNATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTC 720
CG+ + +G L+S YYG +V + C E++ + GH C+ +G W+ LP C
Sbjct: 2 CGDIPELEHGWAQLSSPPYYYGDSVEFNCSESFTMIGHRSITCI-HGVWTQ-LPQC 55
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 468 CGRLTAIPYGSISYLNETTYLGSEVLYSCSRNYRLVGHPRRSCLESKVWSDTAPKCEGKA 527
CG + + +G + Y G V ++CS ++ ++GH +C+ VW+ P+C A
Sbjct: 2 CGDIPELEHGWAQLSSPPYYYGDSVEFNCSESFTMIGHRSITCIHG-VWTQ-LPQC--VA 57
Query: 528 TKDIKVC--SNVAVDRREIR 545
+K C SN+ + ++
Sbjct: 58 IDKLKKCKSSNLIILEEHLK 77
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 367 CGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCL 423
CG + +EHG L + +G + C E++T+IG R + G W PQC+
Sbjct: 2 CGDIPELEHGWAQLSSPPYYYGDSVEFNCSESFTMIGH-RSITCIHGVWTQL-PQCV 56
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 300 GSTISYACPEGNMLVGSATRTCKEGFWTGVAPTCQYFQLQPMDVPNLVL 348
G ++ + C E ++G + TC G WT + +L+ NL++
Sbjct: 23 GDSVEFNCSESFTMIGHRSITCIHGVWTQLPQCVAIDKLKKCKSSNLII 71
>pdb|3RJ3|D Chain D, Complement Components Factor H Ccp19-20 (S1191l Mutant)
And C3d In Complex
pdb|3RJ3|E Chain E, Complement Components Factor H Ccp19-20 (S1191l Mutant)
And C3d In Complex
pdb|3RJ3|F Chain F, Complement Components Factor H Ccp19-20 (S1191l Mutant)
And C3d In Complex
Length = 129
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 620 VATYKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGFTL- 678
++ Y + V+Y+C+ Y++EG TC + G WS P+C++ + E + N L
Sbjct: 23 LSVYAPASSVEYQCQNLYQLEGNKRITCRN-GQWS-EPPKCLHPCVISREIMENYNIALR 80
Query: 679 -TSNATYY---GTAVLYECDENYRLEGHARRLCLENGTWSSGL--PTC 720
T+ Y G +V + C YRL +R L W L PTC
Sbjct: 81 WTAKQKLYLRTGESVEFVCKRGYRLS--SRSHTLRTTCWDGKLEYPTC 126
>pdb|2BZM|A Chain A, Solution Structure Of The Primary Host Recognition Region
Of Complement Factor H
pdb|3OXU|D Chain D, Complement Components Factor H Ccp19-20 And C3d In Complex
pdb|3OXU|E Chain E, Complement Components Factor H Ccp19-20 And C3d In Complex
pdb|3OXU|F Chain F, Complement Components Factor H Ccp19-20 And C3d In Complex
Length = 129
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 620 VATYKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGFTL- 678
++ Y + V+Y+C+ Y++EG TC + G WS P+C++ + E + N L
Sbjct: 23 LSVYAPASSVEYQCQNLYQLEGNKRITCRN-GQWS-EPPKCLHPCVISREIMENYNIALR 80
Query: 679 -TSNATYY---GTAVLYECDENYRLEGHARRLCLENGTWSSGL--PTC 720
T+ Y G +V + C YRL +R L W L PTC
Sbjct: 81 WTAKQKLYSRTGESVEFVCKRGYRLS--SRSHTLRTTCWDGKLEYPTC 126
>pdb|3KZJ|A Chain A, Structure Of Complement Factor H Variant R1203a
Length = 133
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 620 VATYKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGFTL- 678
++ Y + V+Y+C+ Y++EG TC + G WS P+C++ + E + N L
Sbjct: 27 LSVYAPASSVEYQCQNLYQLEGNKRITCRN-GQWS-EPPKCLHPCVISREIMENYNIALR 84
Query: 679 -TSNATYY---GTAVLYECDENYRLEGHARRLCLENGTWSSGL--PTC 720
T+ Y G +V + C YRL +R L W L PTC
Sbjct: 85 WTAKQKLYSRTGESVEFVCKAGYRLS--SRSHTLRTTCWDGKLEYPTC 130
>pdb|2H2R|A Chain A, Crystal Structure Of The Human Cd23 Lectin Domain, Apo
Form
pdb|2H2R|B Chain B, Crystal Structure Of The Human Cd23 Lectin Domain, Apo
Form
pdb|2H2T|B Chain B, Cd23 Lectin Domain, Calcium 2+-Bound
Length = 175
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 223 WVDGEVVTKPSWGKDQPNNYNGEQNCVVLDG-GRGWLWNDVGCKLDYLHWICQ 274
WVDG V +W +P + + ++CV++ G GR WND C W+C
Sbjct: 88 WVDGSHVDYSNWAPGEPTSRSQSEDCVMMRGSGR---WNDAFCDRKLGAWVCD 137
>pdb|3SW0|X Chain X, Structure Of The C-terminal Region (modules 18-20) Of
Complement Regulator Factor H
Length = 188
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 620 VATYKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGFTL- 678
++ Y + V+Y+C+ Y++EG TC + G WS P+C++ + E + N L
Sbjct: 82 LSVYAPASSVEYQCQNLYQLEGNKRITCRN-GQWS-EPPKCLHPCVISREIMENYNIALR 139
Query: 679 -TSNATYY---GTAVLYECDENYRLEGHARRLCLENGTWSSGL--PTC 720
T+ Y G +V + C YRL +R L W L PTC
Sbjct: 140 WTAKQKLYSRTGESVEFVCKRGYRLS--SRSHTLRTTCWDGKLEYPTC 185
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 665 CGNPETVPNGGFTLTSNATY-YGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTCKGN 723
C NP TV N + Y G V Y+C Y + G +CL NG W+ P CK +
Sbjct: 5 CVNPPTVQNAYIVSRQMSKYPSGERVRYQCRSPYEMFGDEEVMCL-NGNWTEP-PQCKDS 62
Query: 724 EG 725
G
Sbjct: 63 TG 64
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 43/118 (36%), Gaps = 23/118 (19%)
Query: 427 CAEPPQISGGIVTT---SGRRTGSVATYSCEPGFILFGSNVNI----------------- 466
C PP + + + S +G Y C + +FG +
Sbjct: 5 CVNPPTVQNAYIVSRQMSKYPSGERVRYQCRSPYEMFGDEEVMCLNGNWTEPPQCKDSTG 64
Query: 467 DCGRLTAIPYGSISYLNETTYL-GSEVLYSCSRNYRLVGHPRRSCLESKVWSDTAPKC 523
CG I G I+ + Y S V Y C Y+L G+ R +C + WS+ PKC
Sbjct: 65 KCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCRNGQ-WSE-PPKC 120
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 9/118 (7%)
Query: 273 CQHNPANCGSP---DRHVNTTFVGTVSTKLGSTISYACPEGNMLVGSATRTCKEGFWTGV 329
C+ + CG P D T+F +V S++ Y C L G+ TC+ G W+
Sbjct: 59 CKDSTGKCGPPPPIDNGDITSFPLSVYAP-ASSVEYQCQNLYQLEGNKRITCRNGQWSE- 116
Query: 330 APTCQY---FQLQPMDVPNLVL-YLFLSKLFRESYERLNVDCGKLEHIEHGTVTLETT 383
P C + + M+ N+ L + KL+ + E + C + + + TL TT
Sbjct: 117 PPKCLHPCVISREIMENYNIALRWTAKQKLYSRTGESVEFVCKRGYRLSSRSHTLRTT 174
>pdb|1QDD|A Chain A, Crystal Structure Of Human Lithostathine To 1.3 A
Resolution
Length = 144
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 52/133 (39%), Gaps = 17/133 (12%)
Query: 143 CAWFPGTLEEGITKSFTCARTLVGQNVFIQLVGVEGSLSLCEVEIFTTDGELERRKDRLK 202
C +F E + C G N+ L EG+ ++ TD
Sbjct: 25 CYYFNEDRETWVDADLYCQNMNSG-NLVSVLTQAEGAFVASLIKESGTD----------- 72
Query: 203 TLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWL-WND 261
VWIG DP R W W G +V+ SWG P++ N CV L G+ W D
Sbjct: 73 DFNVWIGLH-DPKKN-RAWHWSSGSLVSYKSWGIGAPSSVN-PGYCVSLTSSTGFQKWKD 129
Query: 262 VGCKLDYLHWICQ 274
V C+ D ++C+
Sbjct: 130 VPCE-DKFSFVCK 141
>pdb|3R62|A Chain A, Structure Of Complement Regulator Factor H Mutant, T1184r.
pdb|3R62|B Chain B, Structure Of Complement Regulator Factor H Mutant, T1184r
Length = 129
Score = 35.8 bits (81), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 11/108 (10%)
Query: 620 VATYKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGFTLT 679
++ Y + V+Y+C+ Y++EG TC + G WS P+C++ + E + N L
Sbjct: 23 LSVYAPASSVEYQCQNLYQLEGNKRITCRN-GQWS-EPPKCLHPCVISREIMENYNIALR 80
Query: 680 SNA-----TYYGTAVLYECDENYRLEGHARRLCLENGTWSSGL--PTC 720
A + G +V + C YRL +R L W L PTC
Sbjct: 81 WRAKQKLYSRTGESVEFVCKRGYRLS--SRSHTLRTTCWDGKLEYPTC 126
>pdb|3KXV|A Chain A, Structure Of Complement Factor H Variant Q1139a
Length = 133
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 11/108 (10%)
Query: 620 VATYKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGFTL- 678
++ Y + V+Y+C Y++EG TC + G WS P+C++ + E + N L
Sbjct: 27 LSVYAPASSVEYQCANLYQLEGNKRITCRN-GQWS-EPPKCLHPCVISREIMENYNIALR 84
Query: 679 -TSNATYY---GTAVLYECDENYRLEGHARRLCLENGTWSSGL--PTC 720
T+ Y G +V + C YRL +R L W L PTC
Sbjct: 85 WTAKQKLYSRTGESVEFVCKRGYRLS--SRSHTLRTTCWDGKLEYPTC 130
>pdb|2QZD|A Chain A, Fitted Structure Of Scr4 Of Daf Into Cryoem Density
Length = 65
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 365 VDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVC---GDGGKWNGTEPQ 421
+ C I++G + E + YAC++ +T+IGE C D G+W+G P+
Sbjct: 2 IYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPPPE 61
Query: 422 C 422
C
Sbjct: 62 C 62
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 804 IDCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCM---EDGSWSGDEPR 860
I C P IDNG + Y +V Y C + IG + C ++G WSG P
Sbjct: 2 IYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPPPE 61
Query: 861 C 861
C
Sbjct: 62 C 62
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 426 WCAEPPQISGGIVTTSGRRTG--SVATYSCEPGFILFGSN-----VNIDCGRLTAIP 475
+C PPQI GI+ G TY+C GF + G + VN D G + P
Sbjct: 3 YCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPP 59
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 629 VKYRCERGYKVEGEPLSTC---EDTGSWSGSVPEC 660
V Y C +G+ + GE C D G WSG PEC
Sbjct: 28 VTYACNKGFTMIGEHSIYCTVNNDEGEWSGPPPEC 62
>pdb|1LIT|A Chain A, Human Lithostathine
Length = 144
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 52/133 (39%), Gaps = 17/133 (12%)
Query: 143 CAWFPGTLEEGITKSFTCARTLVGQNVFIQLVGVEGSLSLCEVEIFTTDGELERRKDRLK 202
C +F E + C G N+ L EG+ ++ TD
Sbjct: 25 CYYFNEDRETWVDADLYCQNMNSG-NLVSVLTQAEGAFVASLIKESGTD----------- 72
Query: 203 TLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWL-WND 261
VWIG DP R W W G +V+ SWG P++ N CV L G+ W D
Sbjct: 73 DFNVWIGLH-DPK-KNRRWHWSSGSLVSYKSWGIGAPSSVN-PGYCVSLTSSTGFQKWKD 129
Query: 262 VGCKLDYLHWICQ 274
V C+ D ++C+
Sbjct: 130 VPCE-DKFSFVCK 141
>pdb|3KQG|A Chain A, Trimeric Structure Of Langerin
pdb|3KQG|B Chain B, Trimeric Structure Of Langerin
pdb|3KQG|C Chain C, Trimeric Structure Of Langerin
pdb|3KQG|D Chain D, Trimeric Structure Of Langerin
pdb|3KQG|E Chain E, Trimeric Structure Of Langerin
pdb|3KQG|F Chain F, Trimeric Structure Of Langerin
Length = 182
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 189 TTDGELERRKDRLKTLLVWIGAQKDPGITARTWKWVD----GEVVTKPSWGKDQPNNYNG 244
T++ E E L+ WIG K G+ W WVD +V + W +PNN
Sbjct: 88 TSESEQEFLYKTAGGLIYWIGLTK-AGMEG-DWSWVDDTPFNKVQSARFWIPGEPNNAGN 145
Query: 245 EQNCVVLDGGRGWLWNDVGCKLDYLHWICQ 274
++C + WND C +L +IC+
Sbjct: 146 NEHCGNIKAPSLQAWNDAPCDKTFL-FICK 174
>pdb|1T8C|A Chain A, Structure Of The C-Type Lectin Domain Of Cd23
pdb|1T8D|A Chain A, Structure Of The C-Type Lectin Domain Of Cd23
pdb|4EZM|G Chain G, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound To
Its B Cell Receptor Dercd23
pdb|4EZM|H Chain H, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound To
Its B Cell Receptor Dercd23
pdb|4EZM|I Chain I, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound To
Its B Cell Receptor Dercd23
pdb|4EZM|J Chain J, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound To
Its B Cell Receptor Dercd23
pdb|4EZM|K Chain K, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound To
Its B Cell Receptor Dercd23
pdb|4EZM|L Chain L, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound To
Its B Cell Receptor Dercd23
Length = 143
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 223 WVDGEVVTKPSWGKDQPNNYNGEQNCVVLDG-GRGWLWNDVGCKLDYLHWIC 273
WVDG V +W +P + + ++CV++ G GR WND C W+C
Sbjct: 79 WVDGSHVDYSNWAPGEPTSRSQGEDCVMMRGSGR---WNDAFCDRKLGAWVC 127
>pdb|1HUP|A Chain A, Human Mannose Binding Protein Carbohydrate Recognition
Domain Trimerizes Through A Triple Alpha-Helical
Coiled-Coil
Length = 141
Score = 34.3 bits (77), Expect = 0.29, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 226 GEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQ 274
G +T +W + +PNN +++CV+L + WNDV C +L +C+
Sbjct: 93 GNRLTYTNWNEGEPNNAGSDEDCVLLL--KNGQWNDVPCSTSHLA-VCE 138
>pdb|1PPQ|A Chain A, Nmr Structure Of 16th Module Of Immune Adherence Receptor,
Cr1 (Cd35)
Length = 68
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 475 PYGSISYLNETTYLGSEVLYSCSRNYRLVGHPRRSCLES---KVWSDTAPKCE 524
P + ++ +GS + YSC+ +RL+GH C+ S WS P C+
Sbjct: 13 PVNGMVHVITDIQVGSRITYSCTTGHRLIGHSSAECILSGNTAHWSTKPPICQ 65
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 279 NCGSPDRHVNTTFVGTVSTKLGSTISYACPEGNMLVGSATRTC----KEGFWTGVAPTCQ 334
+C +P VN ++GS I+Y+C G+ L+G ++ C W+ P CQ
Sbjct: 6 SCKTPPDPVNGMVHVITDIQVGSRITYSCTTGHRLIGHSSAECILSGNTAHWSTKPPICQ 65
Query: 335 YF 336
Sbjct: 66 RI 67
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 665 CGNPETVPNGGFTLTSNATYYGTAVLYECDENYRLEGHARRLCLENGT---WSSGLPTCK 721
C P NG + ++ G+ + Y C +RL GH+ C+ +G WS+ P C+
Sbjct: 7 CKTPPDPVNGMVHVITD-IQVGSRITYSCTTGHRLIGHSSAECILSGNTAHWSTKPPICQ 65
>pdb|1FIF|A Chain A, N-Acetylgalactosamine-Selective Mutant Of Mannose-Binding
Protein-A (Qpdwg-Hdrpy)
pdb|1FIF|B Chain B, N-Acetylgalactosamine-Selective Mutant Of Mannose-Binding
Protein-A (Qpdwg-Hdrpy)
pdb|1FIF|C Chain C, N-Acetylgalactosamine-Selective Mutant Of Mannose-Binding
Protein-A (Qpdwg-Hdrpy)
pdb|1FIH|A Chain A, N-Acetylgalactosamine Binding Mutant Of Mannose-Binding
Protein A (Qpdwg-Hdrpy), Complex With
N-Acetylgalactosamine
pdb|1FIH|B Chain B, N-Acetylgalactosamine Binding Mutant Of Mannose-Binding
Protein A (Qpdwg-Hdrpy), Complex With
N-Acetylgalactosamine
pdb|1FIH|C Chain C, N-Acetylgalactosamine Binding Mutant Of Mannose-Binding
Protein A (Qpdwg-Hdrpy), Complex With
N-Acetylgalactosamine
Length = 154
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Query: 216 ITARTWKWVDGEVVTKPSWGKDQPNNYNGE-----QNCV-VLDGGRGWLWNDVGCKLDY 268
+T + +V G +T +W KDQP+++ G ++CV ++D G LWND C+ Y
Sbjct: 91 VTEGQFMYVTGGRLTYSNWKKDQPDDWYGHGLGGGEDCVHIVDNG---LWNDDSCQRPY 146
>pdb|1RDI|1 Chain 1, Mannose-Binding Protein, Subtilisin Digest Fragment
Complex With Alpha-Methyl-L-Fucopyranoside
pdb|1RDI|2 Chain 2, Mannose-Binding Protein, Subtilisin Digest Fragment
Complex With Alpha-Methyl-L-Fucopyranoside
pdb|1RDJ|1 Chain 1, Mannose-Binding Protein, Subtilisin Digest Fragment
Complex With Beta-Methyl-L-Fucopyranoside
pdb|1RDJ|2 Chain 2, Mannose-Binding Protein, Subtilisin Digest Fragment
Complex With Beta-Methyl-L-Fucopyranoside
pdb|1RDK|1 Chain 1, Mannose-binding Protein, Subtilisin Digest Fragment
Complex With D-galactose
pdb|1RDK|2 Chain 2, Mannose-binding Protein, Subtilisin Digest Fragment
Complex With D-galactose
pdb|1RDL|1 Chain 1, Mannose-Binding Protein, Subtilisin Digest Fragment
Complex With Alpha-Methyl-D-Mannopyranoside (0.2 M)
pdb|1RDL|2 Chain 2, Mannose-Binding Protein, Subtilisin Digest Fragment
Complex With Alpha-Methyl-D-Mannopyranoside (0.2 M)
pdb|1RDM|1 Chain 1, Mannose-Binding Protein, Subtilisin Digest Fragment
Complex With Alpha-Methyl-D-Mannopyranoside (1.3 M)
pdb|1RDM|2 Chain 2, Mannose-Binding Protein, Subtilisin Digest Fragment
Complex With Alpha-Methyl-D-Mannopyranoside (1.3 M)
pdb|1RDN|1 Chain 1, Mannose-binding Protein, Subtilisin Digest Fragment
Complex With Alpha-methyl-d-n-acetylglucosaminide
pdb|1RDN|2 Chain 2, Mannose-binding Protein, Subtilisin Digest Fragment
Complex With Alpha-methyl-d-n-acetylglucosaminide
pdb|1RDO|1 Chain 1, Mannose-Binding Protein, Subtilisin Digest Fragment
pdb|1RDO|2 Chain 2, Mannose-Binding Protein, Subtilisin Digest Fragment
Length = 113
Score = 34.3 bits (77), Expect = 0.35, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 217 TARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVV-LDGGRGWLWNDVGCKLDYL 269
T ++ + G V +W + +PNN +NCVV L G+ WNDV C +L
Sbjct: 56 TENVFEDLTGNRVRYTNWNEGEPNNVGSGENCVVLLTNGK---WNDVPCSDSFL 106
>pdb|1ELV|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Complement C1s Protease
Length = 333
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 663 VDCGNPETVPNGGFTLTSNATYYGTAVLYECDENYRLE---GHARRLCLENGTW 713
+DCG PE++ NG +T +G+ + Y C+E Y G C NG+W
Sbjct: 2 LDCGIPESIENGKVE-DPESTLFGSVIRYTCEEPYYYMENGGGGEYHCAGNGSW 54
>pdb|2OX8|A Chain A, Human Scavenger Receptor C-Type Lectin Carbohydrate-
Recognition Domain.
pdb|2OX8|B Chain B, Human Scavenger Receptor C-Type Lectin Carbohydrate-
Recognition Domain.
pdb|2OX8|C Chain C, Human Scavenger Receptor C-Type Lectin Carbohydrate-
Recognition Domain.
pdb|2OX8|D Chain D, Human Scavenger Receptor C-Type Lectin Carbohydrate-
Recognition Domain
Length = 140
Score = 33.9 bits (76), Expect = 0.44, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 221 WKWVDGEVVTKPSWGKDQPNNYN-----GEQNCVVLDGGRGWLWNDVGCKLDYLHWICQH 275
WKW+DG +W QP+N+ GE ++ G+ WND C+ D ++IC+
Sbjct: 75 WKWLDGTSPDYKNWKAGQPDNWGHGHGPGEDCAGLIYAGQ---WNDFQCE-DVNNFICEK 130
Query: 276 N 276
+
Sbjct: 131 D 131
>pdb|2OX9|A Chain A, Mouse Scavenger Receptor C-Type Lectin
Carbohydrate-Recognition Domain.
pdb|2OX9|B Chain B, Mouse Scavenger Receptor C-Type Lectin
Carbohydrate-Recognition Domain.
pdb|2OX9|C Chain C, Mouse Scavenger Receptor C-Type Lectin
Carbohydrate-Recognition Domain.
pdb|2OX9|D Chain D, Mouse Scavenger Receptor C-Type Lectin
Carbohydrate-Recognition Domain
Length = 140
Score = 33.5 bits (75), Expect = 0.47, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 207 WIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYN-----GEQNCVVLDGGRGWLWND 261
WIG WKW+DG V +W QP+N+ GE ++ G+ WND
Sbjct: 63 WIGLTDSE--QESEWKWLDGSPVDYKNWKAGQPDNWGSGHGPGEDCAGLIYAGQ---WND 117
Query: 262 VGCKLDYLHWICQ 274
C + ++IC+
Sbjct: 118 FQCD-EINNFICE 129
>pdb|2EHF|A Chain A, Solution Structure Of The Third Sushi Domain From Human
Cub And Sushi Domain-Containing Protein 1
Length = 73
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 654 SGSVPECIYVDCGNPETVPNGGFTLTSNATYYGTAVLYECDENYRLEGHARRLCLENGTW 713
SGS E CG+P G T ++ +G + +EC + L G C +N W
Sbjct: 3 SGSSGEIEKGGCGDPGIPAYG--KRTGSSFLHGDTLTFECPAAFELVGERVITCQQNNQW 60
Query: 714 SSGLPTCKG 722
S P+C G
Sbjct: 61 SGNKPSCSG 69
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 621 ATYKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPEC 660
+++ G + + C +++ GE + TC+ WSG+ P C
Sbjct: 28 SSFLHGDTLTFECPAAFELVGERVITCQQNNQWSGNKPSC 67
>pdb|3G84|A Chain A, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of R343v Mutant Of Human Surfactant
Protein D In Complex With Alpha 1,2 Dimannose.
pdb|3G84|B Chain B, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of R343v Mutant Of Human Surfactant
Protein D In Complex With Alpha 1,2 Dimannose.
pdb|3G84|C Chain C, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of R343v Mutant Of Human Surfactant
Protein D In Complex With Alpha 1,2 Dimannose
Length = 160
Score = 33.1 bits (74), Expect = 0.70, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 226 GEVVTKPSWGKDQPNNYNGEQNCV-VLDGGRGWLWNDVGC 264
GE + +W +PN+ G ++CV + G+ WNDV C
Sbjct: 114 GESLVYSNWAPGEPNDDGGSEDCVEIFTNGK---WNDVAC 150
>pdb|2H8O|A Chain A, The 1.6a Crystal Structure Of The Geranyltransferase From
Agrobacterium Tumefaciens
Length = 335
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 436 GIVTTSGRRTGSVATYSCEPGFILFGSN 463
GI+T +TG++ ++CE G I+ GSN
Sbjct: 213 GIITLQAMKTGALLRFACEAGAIIAGSN 240
>pdb|3P5D|A Chain A, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With Man5 (Man Alpha1-3(Man Alpha1-6)man
Alpha1-6)(Man- Alpha1-3)man
pdb|3P5D|B Chain B, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With Man5 (Man Alpha1-3(Man Alpha1-6)man
Alpha1-6)(Man- Alpha1-3)man
pdb|3P5D|C Chain C, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With Man5 (Man Alpha1-3(Man Alpha1-6)man
Alpha1-6)(Man- Alpha1-3)man
pdb|3P5D|D Chain D, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With Man5 (Man Alpha1-3(Man Alpha1-6)man
Alpha1-6)(Man- Alpha1-3)man
pdb|3P5E|A Chain A, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With Man4 (Man Alpha1-3(Man Alpha1-6)man
Alpha1-6man)
pdb|3P5E|B Chain B, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With Man4 (Man Alpha1-3(Man Alpha1-6)man
Alpha1-6man)
pdb|3P5E|C Chain C, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With Man4 (Man Alpha1-3(Man Alpha1-6)man
Alpha1-6man)
pdb|3P5E|D Chain D, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With Man4 (Man Alpha1-3(Man Alpha1-6)man
Alpha1-6man)
pdb|3P5F|A Chain A, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With Man2 (Man Alpha1-2 Man)
pdb|3P5F|B Chain B, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With Man2 (Man Alpha1-2 Man)
pdb|3P5F|C Chain C, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With Man2 (Man Alpha1-2 Man)
pdb|3P5F|D Chain D, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With Man2 (Man Alpha1-2 Man)
pdb|3P5G|A Chain A, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With Blood Group B Trisaccharide (Gal
Alpha1-3(Fuc Alpha1-2)gal)
pdb|3P5G|B Chain B, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With Blood Group B Trisaccharide (Gal
Alpha1-3(Fuc Alpha1-2)gal)
pdb|3P5G|C Chain C, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With Blood Group B Trisaccharide (Gal
Alpha1-3(Fuc Alpha1-2)gal)
pdb|3P5G|D Chain D, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With Blood Group B Trisaccharide (Gal
Alpha1-3(Fuc Alpha1-2)gal)
pdb|3P5H|A Chain A, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With Laminaritriose
pdb|3P5H|B Chain B, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With Laminaritriose
pdb|3P5H|C Chain C, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With Laminaritriose
pdb|3P5H|D Chain D, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With Laminaritriose
pdb|3P5I|A Chain A, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With 6-So4-Gal-Glcnac
pdb|3P5I|B Chain B, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With 6-So4-Gal-Glcnac
pdb|3P5I|C Chain C, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With 6-So4-Gal-Glcnac
pdb|3P5I|D Chain D, Structure Of The Carbohydrate-Recognition Domain Of Human
Langerin With 6-So4-Gal-Glcnac
Length = 136
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
Query: 189 TTDGELERRKDRLKTLLVWIGAQKDPGITARTWKWVD----GEVVTKPSWGKDQPNNYNG 244
T++ E E L+ WIG K G+ W WVD +V + W +PNN
Sbjct: 42 TSESEQEFLYKTAGGLIYWIGLTK-AGMEG-DWSWVDDTPFNKVQSARFWIPGEPNNAGN 99
Query: 245 EQNCVVLDGGRGWLWNDVGCKLDYLHWICQ 274
++C + WND C +L IC+
Sbjct: 100 NEHCGNIKAPSLQAWNDAPCDKTFLF-ICK 128
>pdb|3TVJ|A Chain A, Catalytic Fragment Of Masp-2 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
Length = 86
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Query: 663 VDCGNPETVPNG--GFTLTSNATYYGTAVLYECDENYRLE--GHARRLCLENGTWSS--- 715
VDCG P+ +P+G + T Y + Y C+E + + +C +G W+S
Sbjct: 6 VDCGPPDDLPSGRVEYITGPGVTTYKAVIQYSCEETFYTMKVNDGKYVCDADGFWTSSKG 65
Query: 716 --GLPTCKGNEGHARR 729
LP C+ G + R
Sbjct: 66 EKSLPVCEPVCGLSAR 81
>pdb|1KZA|1 Chain 1, Complex Of Mbp-C And Man-A13-Man
pdb|1KZA|2 Chain 2, Complex Of Mbp-C And Man-A13-Man
pdb|1KZB|1 Chain 1, Complex Of Mbp-C And Trimannosyl Core
pdb|1KZB|2 Chain 2, Complex Of Mbp-C And Trimannosyl Core
pdb|1KZC|1 Chain 1, Complex Of Mbp-c And High-affinity Linear Trimannose
pdb|1KZC|2 Chain 2, Complex Of Mbp-c And High-affinity Linear Trimannose
pdb|1KZD|1 Chain 1, Complex Of Mbp-C And Glcnac-Terminated Core
pdb|1KZD|2 Chain 2, Complex Of Mbp-C And Glcnac-Terminated Core
pdb|1KZE|1 Chain 1, Complex Of Mbp-C And Bivalent Man-Terminated Glycopeptide
pdb|1KZE|2 Chain 2, Complex Of Mbp-C And Bivalent Man-Terminated Glycopeptide
Length = 115
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 217 TARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVV-LDGGRGWLWNDVGCKLDYL 269
T ++ + G V +W + +PNN +NCVV L G+ WNDV C +L
Sbjct: 59 TENVFEDLTGNRVRYTNWNEGEPNNVGSGENCVVLLTNGK---WNDVPCSDSFL 109
>pdb|1Q3X|A Chain A, Crystal Structure Of The Catalytic Region Of Human Masp-2
pdb|1Q3X|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-2
Length = 328
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 663 VDCGNPETVPNG--GFTLTSNATYYGTAVLYECDENYRLE--GHARRLCLENGTWSS--- 715
VDCG P+ +P+G + T Y + Y C+E + + +C +G W+S
Sbjct: 6 VDCGPPDDLPSGRVEYITGPGVTTYKAVIQYSCEETFYTMKVNDGKYVCEADGFWTSSKG 65
Query: 716 --GLPTCK 721
LP C+
Sbjct: 66 EKSLPVCE 73
>pdb|3C22|A Chain A, Crystal Structure Of The Carbohydrate Recognition Domain
Of Human Langerin
pdb|3C22|B Chain B, Crystal Structure Of The Carbohydrate Recognition Domain
Of Human Langerin
pdb|3C22|C Chain C, Crystal Structure Of The Carbohydrate Recognition Domain
Of Human Langerin
pdb|3C22|D Chain D, Crystal Structure Of The Carbohydrate Recognition Domain
Of Human Langerin
Length = 156
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
Query: 189 TTDGELERRKDRLKTLLVWIGAQKDPGITARTWKWVD----GEVVTKPSWGKDQPNNYNG 244
T++ E E L+ WIG K G+ W WVD +V + W +PNN
Sbjct: 62 TSESEQEFLYKTAGGLIYWIGLTK-AGMEG-DWSWVDDTPFNKVQSARFWIPGEPNNAGN 119
Query: 245 EQNCVVLDGGRGWLWNDVGCKLDYLHWICQ 274
++C + WND C +L IC+
Sbjct: 120 NEHCGNIKAPSLQAWNDAPCDKTFLF-ICK 148
>pdb|1BV4|A Chain A, Apo-Mannose-Binding Protein-C
pdb|1BV4|B Chain B, Apo-Mannose-Binding Protein-C
pdb|1BV4|C Chain C, Apo-Mannose-Binding Protein-C
pdb|1BV4|D Chain D, Apo-Mannose-Binding Protein-C
Length = 118
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 217 TARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVV-LDGGRGWLWNDVGCKLDYL 269
T ++ + G V +W + +PNN +NCVV L G+ WNDV C +L
Sbjct: 61 TENVFEDLTGNRVRYTNWNEGEPNNVGSGENCVVLLTNGK---WNDVPCSDSFL 111
>pdb|1H8U|A Chain A, Crystal Structure Of The Eosinophil Major Basic Protein At
1.8a: An Atypical Lectin With A Paradigm Shift In
Specificity
pdb|1H8U|B Chain B, Crystal Structure Of The Eosinophil Major Basic Protein At
1.8a: An Atypical Lectin With A Paradigm Shift In
Specificity
pdb|2BRS|A Chain A, Embp Heparin Complex
pdb|2BRS|B Chain B, Embp Heparin Complex
Length = 117
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
Query: 181 SLCEVEIFTTDGELERRKDRLKTLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPN 240
+L + F + ++ L VWIG + R ++WVDG W QP
Sbjct: 27 NLVSIHNFNINYRIQCSVSALNQGQVWIGGRITGSGRCRRFQWVDGSRWNFAYWAAHQPW 86
Query: 241 NYNGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQH 275
+ G CV L RG W C L L +IC +
Sbjct: 87 SRGGH--CVALC-TRGGYWRRAHC-LRRLPFICSY 117
>pdb|3P7F|A Chain A, Structure Of The Human Langerin Carbohydrate Recognition
Domain
pdb|3P7F|B Chain B, Structure Of The Human Langerin Carbohydrate Recognition
Domain
pdb|3P7F|C Chain C, Structure Of The Human Langerin Carbohydrate Recognition
Domain
pdb|3P7F|D Chain D, Structure Of The Human Langerin Carbohydrate Recognition
Domain
Length = 146
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 7/90 (7%)
Query: 189 TTDGELERRKDRLKTLLVWIGAQKDPGITARTWKWVDGEVVTKPS----WGKDQPNNYNG 244
T++ E E L+ WIG K G+ W WVD K W +PNN
Sbjct: 42 TSESEQEFLYKTAGGLIYWIGLTK-AGMEG-DWSWVDDTPFNKVQSVRFWIPGEPNNAGN 99
Query: 245 EQNCVVLDGGRGWLWNDVGCKLDYLHWICQ 274
++C + WND C +L IC+
Sbjct: 100 NEHCGNIKAPSLQAWNDAPCDKTFLF-ICK 128
>pdb|3P7G|A Chain A, Structure Of The Human Langerin Carbohydrate Recognition
Domain In Complex With Mannose
pdb|3P7G|B Chain B, Structure Of The Human Langerin Carbohydrate Recognition
Domain In Complex With Mannose
pdb|3P7G|C Chain C, Structure Of The Human Langerin Carbohydrate Recognition
Domain In Complex With Mannose
pdb|3P7G|D Chain D, Structure Of The Human Langerin Carbohydrate Recognition
Domain In Complex With Mannose
pdb|3P7H|A Chain A, Structure Of The Human Langerin Carbohydrate Recognition
Domain In Complex With Maltose
pdb|3P7H|B Chain B, Structure Of The Human Langerin Carbohydrate Recognition
Domain In Complex With Maltose
pdb|3P7H|C Chain C, Structure Of The Human Langerin Carbohydrate Recognition
Domain In Complex With Maltose
pdb|3P7H|D Chain D, Structure Of The Human Langerin Carbohydrate Recognition
Domain In Complex With Maltose
Length = 146
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 7/90 (7%)
Query: 189 TTDGELERRKDRLKTLLVWIGAQKDPGITARTWKWVDGEVVTKPS----WGKDQPNNYNG 244
T++ E E L+ WIG K W WVD K W +PNN
Sbjct: 42 TSESEQEFLYKTAGGLIYWIGLTK--AGXEGDWSWVDDTPFNKVQSVRFWIPGEPNNAGN 99
Query: 245 EQNCVVLDGGRGWLWNDVGCKLDYLHWICQ 274
++C + WND C +L IC+
Sbjct: 100 NEHCGNIKAPSLQAWNDAPCDKTFLF-ICK 128
>pdb|2KV3|A Chain A, Human Regenerating Gene Type Iv (Reg Iv) Protein, P91s
Mutant
Length = 131
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 206 VWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWL-WNDVGC 264
+WIG DP + W+W+DG + SW + G ++C + +L W+ C
Sbjct: 65 IWIGLH-DPQ-KRQQWQWIDGAMYLYRSWSG---KSMGGNKHCAEMSSNNNFLTWSSNEC 119
Query: 265 KLDYLHWICQHNP 277
H++C++ P
Sbjct: 120 N-KRQHFLCKYRP 131
>pdb|4DI1|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa17 From
Mycobacterium Marinum
pdb|4DI1|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase Echa17 From
Mycobacterium Marinum
pdb|4DI1|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase Echa17 From
Mycobacterium Marinum
Length = 277
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 553 AHSILSVTGNDRLYGRTL-IKTADSASSVATYKIGALPTLPAHSILSVTGNDRLYGRTLI 611
H I S G+D RTL AD+A+ V I A+ +P ++ +VTG G TL
Sbjct: 76 GHEIFS-AGDDMPELRTLNAPEADTAARVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLA 134
Query: 612 KTADSASSVATYKIGA 627
AD S K GA
Sbjct: 135 LAADWRVSGDNVKFGA 150
>pdb|3T5O|A Chain A, Crystal Structure Of Human Complement Component C6
pdb|4A5W|B Chain B, Crystal Structure Of C5b6
pdb|4E0S|B Chain B, Crystal Structure Of C5b-6
Length = 913
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 806 CSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCMEDGSWSGDEPRCEK 863
C P +NG + Q VE C+ ++ +G +C+ DG+W + C++
Sbjct: 623 CPQPVPPENGFIRNEKQLYLVGEDVEISCLTGFETVGYQYFRCLPDGTWRQGDVECQR 680
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 657 VPECIYVDCGNPETVP-NGGFTLTSNATYY-GTAVLYECDENYRLEGHARRLCLENGTWS 714
+PE I D G P+ VP GF Y G V C + G+ CL +GTW
Sbjct: 614 LPE-IEADSGCPQPVPPENGFIRNEKQLYLVGEDVEISCLTGFETVGYQYFRCLPDGTWR 672
Query: 715 SGLPTCKGNE 724
G C+ E
Sbjct: 673 QGDVECQRTE 682
>pdb|1TDQ|B Chain B, Structural Basis For The Interactions Between Tenascins
And The C-Type Lectin Domains From Lecticans: Evidence
For A Cross-Linking Role For Tenascins
Length = 130
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 215 GITART----WKWVDGEVVTKPSWGKDQPNNYNGE-QNCVVLDGGRGWLWNDVGC 264
G+ RT ++W DG + W +QP+N+ ++CVV+ WNDV C
Sbjct: 65 GLNDRTIEGDFRWSDGHSLQFEKWRPNQPDNFFATGEDCVVMIWHERGEWNDVPC 119
>pdb|1HCC|A Chain A, Three-Dimensional Structure Of A Complement Control
Protein Module In Solution
Length = 59
Score = 30.8 bits (68), Expect = 3.7, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 802 KAIDCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCMEDGSWSGDEPRC 861
+ + C P I +G V M+ + Y V Y C + GP + KC+ + WS P C
Sbjct: 1 EGLPCKSPPEISHGVVAHMSDSYQYGEEVTYKCFEGFGIDGPAIAKCLGE-KWS-HPPSC 58
Score = 30.0 bits (66), Expect = 6.5, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 665 CGNPETVPNGGFTLTSNATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTC 720
C +P + +G S++ YG V Y+C E + ++G A CL G S P+C
Sbjct: 5 CKSPPEISHGVVAHMSDSYQYGEEVTYKCFEGFGIDGPAIAKCL--GEKWSHPPSC 58
>pdb|1MD8|A Chain A, Monomeric Structure Of The Active Catalytic Domain Of
Complement Protease C1r
Length = 329
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 664 DCGNPETVPNGGF--TLTSNATYYGTAVLYECDENY 697
DCG P +PNG F T T Y + Y C E Y
Sbjct: 1 DCGQPRNLPNGDFRYTTTMGVNTYKARIQYYCHEPY 36
>pdb|1MD7|A Chain A, Monomeric Structure Of The Zymogen Of Complement Protease
C1r
Length = 328
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 664 DCGNPETVPNGGF--TLTSNATYYGTAVLYECDENY 697
DCG P +PNG F T T Y + Y C E Y
Sbjct: 1 DCGQPRNLPNGDFRYTTTMGVNTYKARIQYYCHEPY 36
>pdb|3CFW|A Chain A, L-selectin Lectin And Egf Domains
Length = 164
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 16/67 (23%)
Query: 207 WIGAQKDPGITARTWKWV-DGEVVTKPS--WGKDQPNNYNGEQNCVVL------DGGRGW 257
WIG +K GI W WV + +T+ + WG +PNN +++CV + D G+
Sbjct: 50 WIGIRKIGGI----WTWVGTNKSLTEEAENWGDGEPNNKKNKEDCVEIYIKRNKDAGK-- 103
Query: 258 LWNDVGC 264
WND C
Sbjct: 104 -WNDDAC 109
>pdb|2GGU|A Chain A, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With Maltotriose
pdb|2GGU|B Chain B, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With Maltotriose
pdb|2GGU|C Chain C, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With Maltotriose
pdb|2GGX|A Chain A, Crystal Structure Of The Trimer Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With P-Nitrophenyl Maltoside
pdb|2GGX|B Chain B, Crystal Structure Of The Trimer Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With P-Nitrophenyl Maltoside
pdb|2GGX|C Chain C, Crystal Structure Of The Trimer Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With P-Nitrophenyl Maltoside
pdb|2ORJ|A Chain A, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With N-Acetyl Mannosamine
pdb|2ORJ|B Chain B, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With N-Acetyl Mannosamine
pdb|2ORJ|C Chain C, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With N-Acetyl Mannosamine
pdb|2ORK|A Chain A, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With Inositol-1-phosphate
pdb|2ORK|B Chain B, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With Inositol-1-phosphate
pdb|2ORK|C Chain C, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With Inositol-1-phosphate
pdb|2OS9|A Chain A, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With Myoinositol
pdb|2OS9|B Chain B, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With Myoinositol
pdb|2OS9|C Chain C, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With Myoinositol
pdb|2RIA|A Chain A, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With D-Glycero-D-Manno-Heptose
pdb|2RIA|B Chain B, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With D-Glycero-D-Manno-Heptose
pdb|2RIA|C Chain C, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With D-Glycero-D-Manno-Heptose
pdb|2RIB|A Chain A, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With L-Glycero-D-Manno-Heptose
pdb|2RIB|B Chain B, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With L-Glycero-D-Manno-Heptose
pdb|2RIB|C Chain C, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With L-Glycero-D-Manno-Heptose
pdb|2RIC|A Chain A, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With
L-Glycero-D-Manno-Heptopyranosyl-(1-3)-L-Glycero-D-
Manno-Heptopyranose
pdb|2RIC|B Chain B, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With
L-Glycero-D-Manno-Heptopyranosyl-(1-3)-L-Glycero-D-
Manno-Heptopyranose
pdb|2RIC|C Chain C, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With
L-Glycero-D-Manno-Heptopyranosyl-(1-3)-L-Glycero-D-
Manno-Heptopyranose
pdb|2RID|A Chain A, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With Allyl 7-O-Carbamoyl-L-Glycero-D-Manno-
Heptopyranoside
pdb|2RID|B Chain B, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With Allyl 7-O-Carbamoyl-L-Glycero-D-Manno-
Heptopyranoside
pdb|2RID|C Chain C, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With Allyl 7-O-Carbamoyl-L-Glycero-D-Manno-
Heptopyranoside
pdb|2RIE|A Chain A, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With 2-deoxy-l-glycero-d-manno-heptose
pdb|2RIE|B Chain B, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With 2-deoxy-l-glycero-d-manno-heptose
pdb|2RIE|C Chain C, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With 2-deoxy-l-glycero-d-manno-heptose
pdb|3DBZ|A Chain A, Human Surfactant Protein D
pdb|3DBZ|B Chain B, Human Surfactant Protein D
pdb|3DBZ|C Chain C, Human Surfactant Protein D
pdb|3G81|A Chain A, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With Alpha Methyl Mannoside
pdb|3G81|B Chain B, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With Alpha Methyl Mannoside
pdb|3G81|C Chain C, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With Alpha Methyl Mannoside
pdb|3G83|A Chain A, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With Alpha 1,2 Dimannose.
pdb|3G83|B Chain B, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With Alpha 1,2 Dimannose.
pdb|3G83|C Chain C, Crystal Structure Of The Trimeric Neck And Carbohydrate
Recognition Domain Of Human Surfactant Protein D In
Complex With Alpha 1,2 Dimannose
Length = 160
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 226 GEVVTKPSWGKDQPNNYNGEQNCV-VLDGGRGWLWNDVGC 264
GE + +W +PN+ G ++CV + G+ WND C
Sbjct: 114 GESLVYSNWAPGEPNDDGGSEDCVEIFTNGK---WNDRAC 150
>pdb|2QZF|A Chain A, Scr1 Of Daf From 1ojv Fitted Into Cryoem Density
Length = 62
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 664 DCGNPETVPNGGFTLTSNATY-YGTAVLYECDENY-RLEGHARR-LCLENGTWS 714
DCG P VPN L ++ T + Y+C+E++ ++ G +CL+ WS
Sbjct: 3 DCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWS 56
>pdb|2ZIB|A Chain A, Crystal Structure Analysis Of Calcium-Independent Type Ii
Antifreeze Protein
Length = 133
Score = 30.4 bits (67), Expect = 5.0, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 205 LVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGC 264
+VWIG A W W DG V +W +PN+ + C+ + W+D+ C
Sbjct: 64 IVWIGGSACK--VAGAWSWTDGTPVDYRTWCPTKPNDILSD-CCMQMTAAVDKCWDDLPC 120
>pdb|1B08|A Chain A, Lung Surfactant Protein D (Sp-D) (Fragment)
pdb|1B08|B Chain B, Lung Surfactant Protein D (Sp-D) (Fragment)
pdb|1B08|C Chain C, Lung Surfactant Protein D (Sp-D) (Fragment)
Length = 158
Score = 30.4 bits (67), Expect = 5.1, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 226 GEVVTKPSWGKDQPNNYNGEQNCV-VLDGGRGWLWNDVGC 264
GE + +W +PN+ G ++CV + G+ WND C
Sbjct: 112 GESLVYSNWAPGEPNDDGGSEDCVEIFTNGK---WNDRAC 148
>pdb|1SRZ|A Chain A, Solution Structure Of The Second Complement Control
Protein (Ccp) Module Of The Gaba(B)r1a Receptor, Pro-119
Trans Conformer
pdb|1SS2|A Chain A, Solution Structure Of The Second Complement Control
Protein (Ccp) Module Of The Gaba(B)r1a Receptor, Pro-119
Cis Conformer
Length = 68
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 373 IEHGTVTLE--TTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQC 422
+E+G V L GA + C ++ L+G +R VC G+W+ +P C
Sbjct: 15 LENGKVFLTGGDLPALDGARVEFRCDPDFHLVGSSRSVCSQ-GQWSTPKPHC 65
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 300 GSTISYACPEGNMLVGSATRTCKEGFWTGVAPTCQ 334
G+ + + C LVGS+ C +G W+ P CQ
Sbjct: 32 GARVEFRCDPDFHLVGSSRSVCSQGQWSTPKPHCQ 66
>pdb|1PW9|A Chain A, High Resolution Crystal Structure Of An Active Recombinant
Fragment Of Human Lung Surfactant Protein D
pdb|1PW9|B Chain B, High Resolution Crystal Structure Of An Active Recombinant
Fragment Of Human Lung Surfactant Protein D
pdb|1PW9|C Chain C, High Resolution Crystal Structure Of An Active Recombinant
Fragment Of Human Lung Surfactant Protein D
pdb|1PWB|A Chain A, High Resolution Crystal Structure Of An Active Recombinant
Fragment Of Human Lung Surfactant Protein D With Maltose
pdb|1PWB|B Chain B, High Resolution Crystal Structure Of An Active Recombinant
Fragment Of Human Lung Surfactant Protein D With Maltose
pdb|1PWB|C Chain C, High Resolution Crystal Structure Of An Active Recombinant
Fragment Of Human Lung Surfactant Protein D With Maltose
pdb|3IKN|A Chain A, Crystal Structure Of Galactose Bound Trimeric Human Lung
Surfactant Protein D
pdb|3IKN|B Chain B, Crystal Structure Of Galactose Bound Trimeric Human Lung
Surfactant Protein D
pdb|3IKN|C Chain C, Crystal Structure Of Galactose Bound Trimeric Human Lung
Surfactant Protein D
pdb|3IKP|A Chain A, Crystal Structure Of Inositol Phosphate Bound Trimeric
Human Lung Surfactant Protein D
pdb|3IKP|B Chain B, Crystal Structure Of Inositol Phosphate Bound Trimeric
Human Lung Surfactant Protein D
pdb|3IKP|C Chain C, Crystal Structure Of Inositol Phosphate Bound Trimeric
Human Lung Surfactant Protein D
pdb|3IKQ|A Chain A, Crystal Structure Of Alpha 1-2 Mannobiose Bound Trimeric
Human Lung Surfactant Protein D
pdb|3IKQ|B Chain B, Crystal Structure Of Alpha 1-2 Mannobiose Bound Trimeric
Human Lung Surfactant Protein D
pdb|3IKQ|C Chain C, Crystal Structure Of Alpha 1-2 Mannobiose Bound Trimeric
Human Lung Surfactant Protein D
pdb|3IKR|A Chain A, Crystal Structure Of Alpha 1-4 Mannobiose Bound Trimeric
Human Lung Surfactant Protein D
pdb|3IKR|B Chain B, Crystal Structure Of Alpha 1-4 Mannobiose Bound Trimeric
Human Lung Surfactant Protein D
pdb|3IKR|C Chain C, Crystal Structure Of Alpha 1-4 Mannobiose Bound Trimeric
Human Lung Surfactant Protein D
Length = 177
Score = 30.0 bits (66), Expect = 6.6, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 226 GEVVTKPSWGKDQPNNYNGEQNCV-VLDGGRGWLWNDVGC 264
GE + +W +PN+ G ++CV + G+ WND C
Sbjct: 131 GESLVYSNWAPGEPNDDGGSEDCVEIFTNGK---WNDRAC 167
>pdb|1HFI|A Chain A, Solution Structure Of A Pair Of Complement Modules By
Nuclear Magnetic Resonance
Length = 62
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 615 DSASSVATYKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPEC 660
S SS +Y G + Y CE G+++ E +TC G WS S P+C
Sbjct: 18 SSRSSQESYAHGTKLSYTCEGGFRISEENETTC-YMGKWS-SPPQC 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,481,155
Number of Sequences: 62578
Number of extensions: 1337783
Number of successful extensions: 3859
Number of sequences better than 100.0: 143
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 2601
Number of HSP's gapped (non-prelim): 698
length of query: 881
length of database: 14,973,337
effective HSP length: 107
effective length of query: 774
effective length of database: 8,277,491
effective search space: 6406778034
effective search space used: 6406778034
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)