Query psy11954
Match_columns 881
No_of_seqs 558 out of 3276
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 23:12:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11954.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11954hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02927 secreted complement-b 100.0 6.6E-39 1.4E-43 339.0 23.7 236 362-722 16-263 (263)
2 PHA02927 secreted complement-b 100.0 5.8E-39 1.3E-43 339.4 22.8 210 620-863 41-263 (263)
3 smart00607 FTP eel-Fucolectin 100.0 1.8E-38 3.9E-43 302.3 15.2 143 19-191 1-148 (151)
4 PHA02954 EEV membrane glycopro 100.0 7.6E-33 1.6E-37 293.4 21.5 231 465-818 18-259 (317)
5 PHA02954 EEV membrane glycopro 100.0 1.8E-32 3.8E-37 290.6 21.0 197 621-864 36-240 (317)
6 PHA02639 EEV host range protei 100.0 2.7E-31 5.8E-36 280.7 18.4 179 660-866 17-210 (295)
7 PHA02639 EEV host range protei 100.0 4.9E-31 1.1E-35 278.8 18.0 181 465-723 19-208 (295)
8 PHA02831 EEV host range protei 100.0 1.6E-27 3.6E-32 246.0 17.3 168 293-553 36-207 (268)
9 PHA02831 EEV host range protei 99.9 7.9E-27 1.7E-31 241.0 17.0 165 619-817 36-210 (268)
10 PHA02817 EEV Host range protei 99.8 1.4E-20 3E-25 189.4 12.6 102 621-723 40-148 (225)
11 PHA02817 EEV Host range protei 99.8 4.6E-20 1E-24 185.6 12.5 125 658-809 17-153 (225)
12 cd00057 FA58C Substituted upda 99.5 1.4E-13 3.1E-18 132.9 12.9 132 24-189 10-143 (143)
13 cd03601 CLECT_TC14_like C-type 99.2 3.5E-11 7.5E-16 112.2 7.2 69 204-275 49-119 (119)
14 PF00754 F5_F8_type_C: F5/8 ty 99.1 7.2E-11 1.6E-15 111.4 6.6 121 28-185 2-129 (129)
15 cd00033 CCP Complement control 99.1 1.5E-10 3.2E-15 92.5 6.4 57 806-862 1-57 (57)
16 smart00032 CCP Domain abundant 99.1 1.6E-10 3.6E-15 92.2 6.6 56 806-861 1-57 (57)
17 PF00084 Sushi: Sushi domain ( 99.1 5.6E-11 1.2E-15 94.7 3.7 56 806-861 1-56 (56)
18 cd03591 CLECT_collectin_like C 99.1 1.2E-10 2.7E-15 107.7 6.2 68 203-275 47-114 (114)
19 cd03592 CLECT_selectins_like C 99.0 3.2E-10 7E-15 105.1 6.0 68 204-275 48-115 (115)
20 cd03603 CLECT_VCBS A bacterial 99.0 5.8E-10 1.3E-14 103.8 7.2 69 203-274 45-117 (118)
21 cd03589 CLECT_CEL-1_like C-typ 99.0 5.2E-10 1.1E-14 107.2 7.0 71 202-275 65-137 (137)
22 cd03598 CLECT_EMBP_like C-type 99.0 8.4E-10 1.8E-14 102.6 7.6 69 203-275 49-117 (117)
23 PF00084 Sushi: Sushi domain ( 99.0 4.4E-10 9.5E-15 89.5 4.7 56 665-720 1-56 (56)
24 cd03588 CLECT_CSPGs C-type lec 99.0 6.5E-10 1.4E-14 104.5 6.6 69 204-275 54-123 (124)
25 cd00033 CCP Complement control 99.0 9.2E-10 2E-14 87.9 5.9 57 665-721 1-57 (57)
26 cd03596 CLECT_tetranectin_like 99.0 8.9E-10 1.9E-14 104.4 6.6 69 203-275 58-129 (129)
27 smart00032 CCP Domain abundant 99.0 1.2E-09 2.7E-14 87.0 6.1 56 665-720 1-57 (57)
28 cd03597 CLECT_attractin_like C 98.9 2.7E-09 5.8E-14 100.9 6.8 66 204-275 62-129 (129)
29 cd03590 CLECT_DC-SIGN_like C-t 98.8 8E-09 1.7E-13 97.3 7.2 69 202-274 54-125 (126)
30 cd03599 CLECT_DGCR2_like C-typ 98.8 9.9E-09 2.1E-13 99.0 6.4 69 204-275 68-153 (153)
31 cd03594 CLECT_REG-1_like C-typ 98.7 1.8E-08 3.9E-13 95.3 6.3 68 203-275 61-129 (129)
32 cd03600 CLECT_thrombomodulin_l 98.7 2.3E-08 5E-13 96.3 6.8 72 203-275 57-139 (141)
33 cd03602 CLECT_1 C-type lectin 98.7 2.7E-08 5.8E-13 91.1 6.1 62 203-274 46-107 (108)
34 cd03595 CLECT_chondrolectin_li 98.7 3.2E-08 6.9E-13 96.1 6.4 70 203-275 64-149 (149)
35 smart00231 FA58C Coagulation f 98.5 9.3E-07 2E-11 84.9 11.6 124 28-189 14-138 (139)
36 TIGR00864 PCC polycystin catio 98.5 1.5E-07 3.2E-12 121.8 6.7 68 204-277 378-448 (2740)
37 cd03593 CLECT_NK_receptors_lik 98.3 7.6E-07 1.6E-11 82.4 6.5 63 203-275 54-116 (116)
38 PHA02953 IEV and EEV membrane 98.2 1.5E-06 3.2E-11 85.4 5.4 61 204-275 99-166 (170)
39 smart00034 CLECT C-type lectin 98.2 2.4E-06 5.2E-11 79.7 6.1 67 203-274 59-126 (126)
40 PHA02642 C-type lectin-like pr 97.9 1.5E-05 3.3E-10 80.2 6.5 62 203-277 141-202 (216)
41 KOG4276|consensus 97.7 0.00033 7.2E-09 59.5 9.1 103 58-190 1-111 (113)
42 cd00037 CLECT C-type lectin (C 97.4 0.00026 5.6E-09 64.4 5.9 69 202-274 46-115 (116)
43 PF00059 Lectin_C: Lectin C-ty 97.4 0.00017 3.6E-09 64.9 4.2 64 202-274 37-104 (105)
44 PHA03097 C-type lectin-like pr 97.1 0.00068 1.5E-08 66.1 5.4 57 203-276 99-155 (157)
45 PF07738 Sad1_UNC: Sad1 / UNC- 95.4 0.098 2.1E-06 49.7 9.4 121 38-191 7-135 (135)
46 cd08366 APC10 APC10 subunit of 93.5 0.74 1.6E-05 43.7 10.4 69 29-104 10-80 (139)
47 cd08159 APC10-like APC10-like 91.8 2.1 4.6E-05 40.0 10.7 61 38-104 15-76 (129)
48 cd08667 APC10-ZZEF1 APC10/DOC1 91.1 2.8 6E-05 39.3 10.8 62 38-105 15-77 (131)
49 PF14704 DERM: Dermatopontin 89.9 1.1 2.4E-05 43.5 7.4 127 386-524 2-149 (152)
50 KOG3516|consensus 89.1 0.56 1.2E-05 57.6 5.6 129 27-189 41-172 (1306)
51 PHA02867 C-type lectin protein 88.8 0.42 9.2E-06 46.7 3.6 54 204-276 102-155 (167)
52 smart00136 LamNT Laminin N-ter 87.3 11 0.00023 39.5 13.1 64 20-85 12-108 (238)
53 PF00055 Laminin_N: Laminin N- 86.0 0.6 1.3E-05 48.8 3.1 64 20-85 6-106 (237)
54 KOG1094|consensus 81.8 7.4 0.00016 45.1 9.4 103 61-191 75-180 (807)
55 KOG4350|consensus 80.3 2.6 5.7E-05 45.9 5.1 85 13-103 271-363 (620)
56 cd08365 APC10-like1 APC10-like 79.4 19 0.00042 33.8 9.9 61 38-104 16-77 (131)
57 PF14704 DERM: Dermatopontin 78.3 14 0.00031 35.8 9.1 117 299-463 3-131 (152)
58 PF03256 APC10: Anaphase-promo 78.2 2.5 5.4E-05 42.6 4.0 70 29-105 37-109 (193)
59 PF06588 Muskelin_N: Muskelin 76.6 12 0.00026 37.3 8.0 63 19-105 21-85 (199)
60 PF13163 DUF3999: Protein of u 74.7 18 0.00039 41.5 10.3 97 65-191 114-212 (429)
61 cd08665 APC10-CUL7 APC10-like 73.4 40 0.00087 31.6 10.2 63 37-105 14-77 (131)
62 cd08666 APC10-HECTD3 APC10-lik 71.0 10 0.00022 35.7 5.7 68 29-102 11-79 (134)
63 smart00008 HormR Domain presen 62.8 6.3 0.00014 32.6 2.5 33 824-856 18-53 (70)
64 PF02793 HRM: Hormone receptor 56.8 12 0.00025 30.5 3.0 34 683-716 17-55 (66)
65 PF02793 HRM: Hormone receptor 54.8 14 0.0003 30.1 3.2 37 761-797 18-55 (66)
66 smart00008 HormR Domain presen 51.3 13 0.00028 30.8 2.5 32 684-715 19-53 (70)
67 KOG4350|consensus 51.0 92 0.002 34.5 9.3 59 42-104 454-513 (620)
68 KOG4289|consensus 44.7 69 0.0015 41.2 8.0 37 486-524 1871-1908(2531)
69 PF14652 DUF4457: Domain of un 44.4 1.1E+02 0.0024 33.7 9.2 67 37-103 54-124 (329)
70 cd08664 APC10-HERC2 APC10-like 44.1 63 0.0014 31.1 6.1 62 36-104 37-99 (152)
71 PF07461 NADase_NGA: Nicotine 34.2 13 0.00029 39.7 0.0 54 30-86 58-113 (446)
72 PF12662 cEGF: Complement Clr- 30.2 38 0.00081 21.7 1.5 19 493-512 3-21 (24)
No 1
>PHA02927 secreted complement-binding protein; Provisional
Probab=100.00 E-value=6.6e-39 Score=338.99 Aligned_cols=236 Identities=27% Similarity=0.577 Sum_probs=202.5
Q ss_pred cccccCCCCCcCCCceEEe-----cCCcccCCcEEEEEeCCCcEEe--CcceEEecCCCcccCCCCcccccccCCCCCcC
Q psy11954 362 RLNVDCGKLEHIEHGTVTL-----ETTRTTHGAVAIYACHENYTLI--GETRRVCGDGGKWNGTEPQCLFDWCAEPPQIS 434 (881)
Q Consensus 362 ~~~~~C~~~~~~~nG~~~~-----~~~~~~~g~~~~~~C~~Gy~l~--G~~~~~C~~~G~Ws~~~P~C~~~~C~~p~~~~ 434 (881)
+..+.|+.|..+.||.+.. ....|.+|++|+|+|++||.++ |..+++|+.+| |+. .|.|+++.|+.|+.+.
T Consensus 16 c~~~~c~~~~~~~~~~~~~~~~~~~~~~y~~g~~v~y~C~~Gy~~~~~g~~~~~C~~~g-Ws~-~p~C~~~~C~~p~~i~ 93 (263)
T PHA02927 16 CVLSCCTIPSRPINMKFKNSVETDANANYNIGDTIEYLCLPGYRKQKMGPIYAKCTGTG-WTL-FNQCIKRRCPSPRDID 93 (263)
T ss_pred HHhccCCCCCcccceeeccccccccCceeCCCCEEEEEeCCCceecCCCccEEEecCCC-CCC-CCcEEeCCCcCCCCCC
Confidence 3448999999999998762 2347899999999999999986 77889999988 995 7999999999888888
Q ss_pred CCeEEcCCCCCCCeEEEEcCCCceeeCceeeecCCCCCCCCCCceeeccCceecCcEEEEEcCCCcEEcCCCceeeccCC
Q psy11954 435 GGIVTTSGRRTGSVATYSCEPGFILFGSNVNIDCGRLTAIPYGSISYLNETTYLGSEVLYSCSRNYRLVGHPRRSCLESK 514 (881)
Q Consensus 435 ng~~~~~~~~~gs~~~y~C~~Gy~l~g~~~~i~C~~p~~~~nG~~~~~~~~~~~gs~v~y~C~~Gy~L~G~~~~tC~~~G 514 (881)
||.+.. ..+.+|++|+|+|++||+|+|...++|+.+|
T Consensus 94 NG~~~~-------------------------------------------~~~~~G~~v~y~C~~Gy~l~G~~~~~C~~~~ 130 (263)
T PHA02927 94 NGQLDI-------------------------------------------GGVDFGSSITYSCNSGYQLIGESKSYCELGS 130 (263)
T ss_pred CCEEeC-------------------------------------------CCccCCCEEEEECCCCCEEcCCCeeEEEeCC
Confidence 876532 1245799999999999999999999999753
Q ss_pred ----cccCCcccccccccccceeccccccccccccCCCCCCCCCeeEEEeccccccCceEEEecCCCCccceeeecCCCC
Q psy11954 515 ----VWSDTAPKCEGKATKDIKVCSNVAVDRREIRCPEPTLPAHSILSVTGNDRLYGRTLIKTADSASSVATYKIGALPT 590 (881)
Q Consensus 515 ----~Ws~~~P~C~~~~~~~~~~~~~~~~~~~~i~C~~p~~~~ng~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~ 590 (881)
+|++.+|.|+ .+.|+.|+.+.||.+..
T Consensus 131 ~g~~~Ws~~~P~C~------------------~~~C~~P~~~~nG~~~~------------------------------- 161 (263)
T PHA02927 131 TGSMVWNPEAPICE------------------SVKCQSPPSISNGRHNG------------------------------- 161 (263)
T ss_pred CCcceECCCCCccc------------------cccCCCCCCCCCcEEcC-------------------------------
Confidence 7999999999 78999999999987521
Q ss_pred CCcceeeeeecCCccccceeeeccCCCCCcccccCCCEEEEEcCCCCeecCCCceEecCCCceecCCCeeecccCCCCCC
Q psy11954 591 LPAHSILSVTGNDRLYGRTLIKTADSASSVATYKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECIYVDCGNPET 670 (881)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gs~v~~~C~~GY~l~G~~~~tC~~~G~Ws~~~P~C~~v~C~~p~~ 670 (881)
....|.+|++|+|+|++||.|.|...++|+ +|+|+. +|+|+++.|+.|.
T Consensus 162 ----------------------------~~~~y~~g~~v~y~C~~Gy~l~G~~~~~C~-~G~Ws~-~P~C~~v~C~~P~- 210 (263)
T PHA02927 162 ----------------------------YEDFYTDGSVVTYSCNSGYSLIGNSGVLCS-GGEWSD-PPTCQIVKCPHPT- 210 (263)
T ss_pred ----------------------------CcccccCCCEEEEECCCCCEECCCCeeEEC-CCccCC-CCeEeEeECcCCC-
Confidence 013578899999999999999999999998 899997 7999999999875
Q ss_pred CCCceEEec-CCCeecCcEEEEEcCCCceecCCceeeeccCCcccCCCCceee
Q psy11954 671 VPNGGFTLT-SNATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTCKG 722 (881)
Q Consensus 671 ~~nG~~~~~-~~~~~~g~~v~y~C~~Gy~L~G~~~~~C~~~G~Ws~~~P~C~~ 722 (881)
+.||.+... ...|.+|++|+|+|++||+|.|+++++|+++|+|++++|+|.+
T Consensus 211 i~ng~~~~~~k~~y~~g~~v~y~C~~Gy~l~G~~~~~C~~~g~Ws~~~P~C~~ 263 (263)
T PHA02927 211 ISNGYLSSGFKRSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTWQPELPKCVR 263 (263)
T ss_pred CCCCEEecCCCCccccCCEEEEECCCCCeEcCCCCeEECCCCEECCCCCeecC
Confidence 778988643 3457799999999999999999999999999999999999963
No 2
>PHA02927 secreted complement-binding protein; Provisional
Probab=100.00 E-value=5.8e-39 Score=339.43 Aligned_cols=210 Identities=27% Similarity=0.670 Sum_probs=184.9
Q ss_pred cccccCCCEEEEEcCCCCeec--CCCceEecCCCceecCCCeeecccCCCCCCCCCceEEecCCCeecCcEEEEEcCCCc
Q psy11954 620 VATYKIGALVKYRCERGYKVE--GEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGFTLTSNATYYGTAVLYECDENY 697 (881)
Q Consensus 620 ~~~~~~Gs~v~~~C~~GY~l~--G~~~~tC~~~G~Ws~~~P~C~~v~C~~p~~~~nG~~~~~~~~~~~g~~v~y~C~~Gy 697 (881)
...|.+|++|+|+|++||.+. |+..++|+.+| |+. .|.|+++.|+.|+.+.||.+.. ..+.||++|+|+|++||
T Consensus 41 ~~~y~~g~~v~y~C~~Gy~~~~~g~~~~~C~~~g-Ws~-~p~C~~~~C~~p~~i~NG~~~~--~~~~~G~~v~y~C~~Gy 116 (263)
T PHA02927 41 NANYNIGDTIEYLCLPGYRKQKMGPIYAKCTGTG-WTL-FNQCIKRRCPSPRDIDNGQLDI--GGVDFGSSITYSCNSGY 116 (263)
T ss_pred CceeCCCCEEEEEeCCCceecCCCccEEEecCCC-CCC-CCcEEeCCCcCCCCCCCCEEeC--CCccCCCEEEEECCCCC
Confidence 357999999999999999985 77889999877 995 7999999999999999999875 34679999999999999
Q ss_pred eecCCceeeeccCC----cccCCCCceeecccCceeeeecCCeecCCCCcccCCCCCCcc---cc--CCCCccCCCeEEE
Q psy11954 698 RLEGHARRLCLENG----TWSSGLPTCKGNEGHARRLCLENGTWSSGLPTCKGCKTPKKS---LT--RPALSCLPGKRFY 768 (881)
Q Consensus 698 ~L~G~~~~~C~~~G----~Ws~~~P~C~~~~g~~~~~C~~~g~ws~~~p~C~~C~~p~~~---~~--~~~~~~~g~~v~~ 768 (881)
+|+|...++|+++| +|++..|+|+.+ .|+.|+.+ .+ ....|.+|+.++|
T Consensus 117 ~l~G~~~~~C~~~~~g~~~Ws~~~P~C~~~----------------------~C~~P~~~~nG~~~~~~~~y~~g~~v~y 174 (263)
T PHA02927 117 QLIGESKSYCELGSTGSMVWNPEAPICESV----------------------KCQSPPSISNGRHNGYEDFYTDGSVVTY 174 (263)
T ss_pred EEcCCCeeEEEeCCCCcceECCCCCccccc----------------------cCCCCCCCCCcEEcCCcccccCCCEEEE
Confidence 99999999999753 799999999988 79988766 11 2334778999999
Q ss_pred -ccCCceeeccccCceeEEEEccCCeeecCCCccccccCCCCCCCCCceEEEc-cCcccCCCEEEEEcCCCCEEcCCCee
Q psy11954 769 -YHRGIFRLQNTQKVSYTRTCTKRGTWSGHIPTCKAIDCSHPGSIDNGRVIIM-NQTTTYNSAVEYHCVPQYQRIGPYLR 846 (881)
Q Consensus 769 -C~~Gy~l~G~~~~~~~~~~C~~~G~Ws~~~p~C~~v~C~~p~~~~nG~~~~~-~~~~~~g~~v~f~C~~Gy~l~G~~~~ 846 (881)
|++||.|.|+ ..++|+ +|+|+. +|+|+.+.|+.|. +.||.+... +..+.||++|+|+|++||+|.|+.++
T Consensus 175 ~C~~Gy~l~G~-----~~~~C~-~G~Ws~-~P~C~~v~C~~P~-i~ng~~~~~~k~~y~~g~~v~y~C~~Gy~l~G~~~~ 246 (263)
T PHA02927 175 SCNSGYSLIGN-----SGVLCS-GGEWSD-PPTCQIVKCPHPT-ISNGYLSSGFKRSYSYNDNVDFKCKYGYKLSGSSSS 246 (263)
T ss_pred ECCCCCEECCC-----CeeEEC-CCccCC-CCeEeEeECcCCC-CCCCEEecCCCCccccCCEEEEECCCCCeEcCCCCe
Confidence 9999999999 899997 899997 7999999999884 678987643 45588999999999999999999999
Q ss_pred EeCCCCeecCCCCceec
Q psy11954 847 KCMEDGSWSGDEPRCEK 863 (881)
Q Consensus 847 ~C~~~G~Ws~~~P~C~~ 863 (881)
+|++||+|++++|+|++
T Consensus 247 ~C~~~g~Ws~~~P~C~~ 263 (263)
T PHA02927 247 TCSPGNTWQPELPKCVR 263 (263)
T ss_pred EECCCCEECCCCCeecC
Confidence 99999999999999974
No 3
>smart00607 FTP eel-Fucolectin Tachylectin-4 Pentaxrin-1 Domain.
Probab=100.00 E-value=1.8e-38 Score=302.28 Aligned_cols=143 Identities=38% Similarity=0.572 Sum_probs=127.8
Q ss_pred cccccCCCCceeccCCCCCC-----CCCCcCCCCCCCcCCCceeccCCCCCCcEEEEcCCeEEEEEEEEEccCCCCCCCC
Q psy11954 19 GTNVALRRPTNQSSTIRGAP-----SSNANDGELTTVHDGKRCTETQKEVSPWWQVDLLRPYPIRIVRITTRGCCGHQPL 93 (881)
Q Consensus 19 ~~nlA~~k~a~qSS~~~~~~-----a~~AvDG~~~~~~~~~~c~~t~~~~~pWw~VDLg~~~~i~~V~i~nr~d~~~~~~ 93 (881)
+.|||++|+|+|||++.++. |.+||||++++.|..++|+||..|.+|||+|||++.|.|.+|+|+||.|||.+||
T Consensus 1 ~~NvA~~~~a~QSS~~~~~~~~~~~A~~AVDGn~~~~~~~~scthT~~e~~PWW~VDL~~~~~V~~V~I~NR~Dcc~~rl 80 (151)
T smart00607 1 QENVAGRGPATQSTYGRGAPPGLSHASAAIDGNRASFTPEGSCSHTEKRSNPWWRVDLLQYMTIHSVTITNRGDCCGERI 80 (151)
T ss_pred CccccCCCceeeccccCCCCccccCHhHcCcCCccCCCCCCccccCCCCCCCeEEEeCCCeEEeeEEEEecCCCCCCccc
Confidence 47999999999999977653 8999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEEEccCCCCCCCCCccCCCCCCCCCCCcccceeeccCCCCCCCceeeeccCccCCCceEEEeCCCCCcceEEEEEE
Q psy11954 94 QDLEIRVGNSTDLQKNPLCAWFPGTLGHQPLQDLEIRVGNSTDLQKNPLCAWFPGTLEEGITKSFTCARTLVGQNVFIQL 173 (881)
Q Consensus 94 ~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gRyV~i~~ 173 (881)
++|+||||++.+. +.+.|+.|+... ....+..+++.|.++|.||||+|+|
T Consensus 81 ~~~eI~IG~s~~~-----------------------------~~~~n~~c~~~~-~~~~~~~~~~~c~~~~~GRYV~i~L 130 (151)
T smart00607 81 TGARILIGNSLEN-----------------------------GGINNPNCSTGG-LMAGGETKTFCCPPPMIGRYVTVYL 130 (151)
T ss_pred cceEEEECCcccc-----------------------------cCCcCcccCCCc-eeCCCceEEEeCCCCCeeEEEEEEe
Confidence 9999999999652 345677777654 3456778999998779999999999
Q ss_pred ecCccceEeeEEEeeccc
Q psy11954 174 VGVEGSLSLCEVEIFTTD 191 (881)
Q Consensus 174 ~g~~~~l~l~EveV~g~~ 191 (881)
+|+.+.|+|||||||+..
T Consensus 131 pg~~~~L~LCEVeV~~~~ 148 (151)
T smart00607 131 PKPNESLILCEVEVNALF 148 (151)
T ss_pred cCCCccEEEeEEEEcccC
Confidence 998889999999999864
No 4
>PHA02954 EEV membrane glycoprotein; Provisional
Probab=100.00 E-value=7.6e-33 Score=293.35 Aligned_cols=231 Identities=18% Similarity=0.413 Sum_probs=186.2
Q ss_pred eecCCCCCCCCCCceeeccCceecCcEEEEEcCCCcEEcCCCceeeccCCcccCCcccccccccccceeccccccccccc
Q psy11954 465 NIDCGRLTAIPYGSISYLNETTYLGSEVLYSCSRNYRLVGHPRRSCLESKVWSDTAPKCEGKATKDIKVCSNVAVDRREI 544 (881)
Q Consensus 465 ~i~C~~p~~~~nG~~~~~~~~~~~gs~v~y~C~~Gy~L~G~~~~tC~~~G~Ws~~~P~C~~~~~~~~~~~~~~~~~~~~i 544 (881)
.+.|+.| .+.||.+......|.+|++|+|+|++||.+.+. .++|+. +.|++++| |+ .
T Consensus 18 ~~~C~~P-~~~ng~~~~~~~~Y~~gd~V~y~C~~GY~l~~~-~itC~~-~~WS~~~p-C~-------------------k 74 (317)
T PHA02954 18 YSTCTVP-TMNNAKLTSTETSFNDKQKVTFTCDSGYYSLDP-NAVCET-DKWKYENP-CK-------------------K 74 (317)
T ss_pred hCcCCCC-CCCcCEEcCCcccccCCCEEEEEcCCCcccCCC-CeEECC-CcccCCCC-CC-------------------C
Confidence 4678876 468999876545688899999999999999975 689985 57998777 98 3
Q ss_pred cCCCCCCCCCeeEEEeccccccCceEEEecCCCCccceeeecCCCCCCcceeeeeecCCccccceeeeccCCCCCccccc
Q psy11954 545 RCPEPTLPAHSILSVTGNDRLYGRTLIKTADSASSVATYKIGALPTLPAHSILSVTGNDRLYGRTLIKTADSASSVATYK 624 (881)
Q Consensus 545 ~C~~p~~~~ng~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (881)
.|+.|..+.++.. ...|.
T Consensus 75 ~C~~p~~~~~~~~--------------------------------------------------------------~~~y~ 92 (317)
T PHA02954 75 MCTVSDYVSELYD--------------------------------------------------------------KPLYE 92 (317)
T ss_pred cCCCCcccccccc--------------------------------------------------------------CCCcc
Confidence 5877654443221 13588
Q ss_pred CCCEEEEEcCCCCeecCCCceEecC---CCceecCCCeeecccCCCCCCCCCceEEecCCCeecCcEEEEEcCCCceecC
Q psy11954 625 IGALVKYRCERGYKVEGEPLSTCED---TGSWSGSVPECIYVDCGNPETVPNGGFTLTSNATYYGTAVLYECDENYRLEG 701 (881)
Q Consensus 625 ~Gs~v~~~C~~GY~l~G~~~~tC~~---~G~Ws~~~P~C~~v~C~~p~~~~nG~~~~~~~~~~~g~~v~y~C~~Gy~L~G 701 (881)
+|++|+|+|++||. .++|+. ++.|+. .|+|+.+.|++| .+.||.+......|.||+.|+|+|++||.|.|
T Consensus 93 ~G~~V~ysC~~Gy~-----~~~C~~~g~~~~WS~-~ptC~~i~C~pP-~i~NG~~~~~~~~Y~yGd~VtysC~~GY~L~G 165 (317)
T PHA02954 93 VNSTITLICKDETK-----YFRCEEKNGNTSWND-TVTCPNAECQPL-QLEHGSCQPVKEKYSFGEHITINCDVGYEVIG 165 (317)
T ss_pred CCCEEEEEECCCCc-----EEEeCCCCCCCccCC-CCeecceECCCC-CCCCCeeccCCCceeCCCEEEEEcCCCCEECc
Confidence 99999999999995 579985 468996 689999999755 58899987655668899999999999999999
Q ss_pred CceeeeccCCcccCCCCceeecccCceeeeecCCeecCCCCcccCCCCCCcc--ccCCCCccCCCeEEE-ccCCceeecc
Q psy11954 702 HARRLCLENGTWSSGLPTCKGNEGHARRLCLENGTWSSGLPTCKGCKTPKKS--LTRPALSCLPGKRFY-YHRGIFRLQN 778 (881)
Q Consensus 702 ~~~~~C~~~G~Ws~~~P~C~~~~g~~~~~C~~~g~ws~~~p~C~~C~~p~~~--~~~~~~~~~g~~v~~-C~~Gy~l~G~ 778 (881)
+..++|+++ .|+ +.|+|+.. |+.|.+. ......|.+|++++| |++||.|.|+
T Consensus 166 s~~i~C~~~-~Ws-~~P~C~~~-----------------------C~~P~i~NG~~sg~~y~~Gd~Vtf~C~~Gy~L~Gs 220 (317)
T PHA02954 166 ASYISCTAN-SWN-VIPSCQQK-----------------------CDIPSLSNGLISGSTFSIGGVIHLSCKSGFTLTGS 220 (317)
T ss_pred CCeeEECCC-cCC-CCCccccc-----------------------cCCCCCCCCeEcCCCcccCCEEEEECCCCCeECCC
Confidence 999999977 698 58999854 8766443 233446889999999 9999999999
Q ss_pred ccCceeEEEEccCCeeecCCCccccc-----cCCCCCCCCCceEE
Q psy11954 779 TQKVSYTRTCTKRGTWSGHIPTCKAI-----DCSHPGSIDNGRVI 818 (881)
Q Consensus 779 ~~~~~~~~~C~~~G~Ws~~~p~C~~v-----~C~~p~~~~nG~~~ 818 (881)
.+++|+ +|+|++..|+|... .|...+.+++|.-.
T Consensus 221 -----~~itC~-~g~Ws~~~P~C~~~~~~~~~~~~~~~~~~~~~~ 259 (317)
T PHA02954 221 -----PSSTCI-DGKWNPVLPICVRSNEEFDPVDDGPDDETDLSK 259 (317)
T ss_pred -----cceEEC-CCeEeCCCCceeCCCCcccccCCCCCCccccch
Confidence 999997 89999999999876 45566677777543
No 5
>PHA02954 EEV membrane glycoprotein; Provisional
Probab=100.00 E-value=1.8e-32 Score=290.58 Aligned_cols=197 Identities=20% Similarity=0.432 Sum_probs=165.9
Q ss_pred ccccCCCEEEEEcCCCCeecCCCceEecCCCceecCCCeeecccCCCCCCCCCceEEecCCCeecCcEEEEEcCCCceec
Q psy11954 621 ATYKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGFTLTSNATYYGTAVLYECDENYRLE 700 (881)
Q Consensus 621 ~~~~~Gs~v~~~C~~GY~l~G~~~~tC~~~G~Ws~~~P~C~~v~C~~p~~~~nG~~~~~~~~~~~g~~v~y~C~~Gy~L~ 700 (881)
..|.+|++|+|+|++||.+.+. .++|+. +.|+++.| |+ +.|+.|..+.++.+ ...|.+|++|+|+|++||.
T Consensus 36 ~~Y~~gd~V~y~C~~GY~l~~~-~itC~~-~~WS~~~p-C~-k~C~~p~~~~~~~~---~~~y~~G~~V~ysC~~Gy~-- 106 (317)
T PHA02954 36 TSFNDKQKVTFTCDSGYYSLDP-NAVCET-DKWKYENP-CK-KMCTVSDYVSELYD---KPLYEVNSTITLICKDETK-- 106 (317)
T ss_pred ccccCCCEEEEEcCCCcccCCC-CeEECC-CcccCCCC-CC-CcCCCCcccccccc---CCCccCCCEEEEEECCCCc--
Confidence 4688999999999999999875 699985 57998877 97 57998877766643 3457799999999999994
Q ss_pred CCceeeecc---CCcccCCCCceeecccCceeeeecCCeecCCCCcccCCCCCCcc--c--cCCCCccCCCeEEE-ccCC
Q psy11954 701 GHARRLCLE---NGTWSSGLPTCKGNEGHARRLCLENGTWSSGLPTCKGCKTPKKS--L--TRPALSCLPGKRFY-YHRG 772 (881)
Q Consensus 701 G~~~~~C~~---~G~Ws~~~P~C~~~~g~~~~~C~~~g~ws~~~p~C~~C~~p~~~--~--~~~~~~~~g~~v~~-C~~G 772 (881)
.++|+. ++.||. .|+|+.+ .|++|... . .....|.+|+.++| |++|
T Consensus 107 ---~~~C~~~g~~~~WS~-~ptC~~i----------------------~C~pP~i~NG~~~~~~~~Y~yGd~VtysC~~G 160 (317)
T PHA02954 107 ---YFRCEEKNGNTSWND-TVTCPNA----------------------ECQPLQLEHGSCQPVKEKYSFGEHITINCDVG 160 (317)
T ss_pred ---EEEeCCCCCCCccCC-CCeecce----------------------ECCCCCCCCCeeccCCCceeCCCEEEEEcCCC
Confidence 679975 468996 5799988 79766544 1 22356899999999 9999
Q ss_pred ceeeccccCceeEEEEccCCeeecCCCccccccCCCCCCCCCceEEEccCcccCCCEEEEEcCCCCEEcCCCeeEeCCCC
Q psy11954 773 IFRLQNTQKVSYTRTCTKRGTWSGHIPTCKAIDCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCMEDG 852 (881)
Q Consensus 773 y~l~G~~~~~~~~~~C~~~G~Ws~~~p~C~~v~C~~p~~~~nG~~~~~~~~~~~g~~v~f~C~~Gy~l~G~~~~~C~~~G 852 (881)
|.|.|+ ..++|+++ .|+ ..|.|+. .|+.| .+.||.+.. ..+.||++|+|+|++||.|.|+..++|+ +|
T Consensus 161 Y~L~Gs-----~~i~C~~~-~Ws-~~P~C~~-~C~~P-~i~NG~~sg--~~y~~Gd~Vtf~C~~Gy~L~Gs~~itC~-~g 228 (317)
T PHA02954 161 YEVIGA-----SYISCTAN-SWN-VIPSCQQ-KCDIP-SLSNGLISG--STFSIGGVIHLSCKSGFTLTGSPSSTCI-DG 228 (317)
T ss_pred CEECcC-----CeeEECCC-cCC-CCCcccc-ccCCC-CCCCCeEcC--CCcccCCEEEEECCCCCeECCCcceEEC-CC
Confidence 999999 99999987 698 6899986 69865 688998764 3488999999999999999999999997 99
Q ss_pred eecCCCCceecc
Q psy11954 853 SWSGDEPRCEKR 864 (881)
Q Consensus 853 ~Ws~~~P~C~~~ 864 (881)
+|++++|+|+..
T Consensus 229 ~Ws~~~P~C~~~ 240 (317)
T PHA02954 229 KWNPVLPICVRS 240 (317)
T ss_pred eEeCCCCceeCC
Confidence 999999999987
No 6
>PHA02639 EEV host range protein; Provisional
Probab=99.97 E-value=2.7e-31 Score=280.71 Aligned_cols=179 Identities=23% Similarity=0.534 Sum_probs=157.4
Q ss_pred eecccCCCCCCCCCceEEecCCCeecCcEEEEEcCCCceecCCceeeecc---CCcccCCCCceeecccCceeeeecCCe
Q psy11954 660 CIYVDCGNPETVPNGGFTLTSNATYYGTAVLYECDENYRLEGHARRLCLE---NGTWSSGLPTCKGNEGHARRLCLENGT 736 (881)
Q Consensus 660 C~~v~C~~p~~~~nG~~~~~~~~~~~g~~v~y~C~~Gy~L~G~~~~~C~~---~G~Ws~~~P~C~~~~g~~~~~C~~~g~ 736 (881)
++++.|+.|+.+.||.+......|.+|++|+|+|++||+|.|...++|++ +|+|++..|+|+.+
T Consensus 17 ~k~i~C~~P~~i~NG~v~~~~~~y~~G~~V~Y~Cn~GY~L~G~~~~~C~~d~~nG~WS~~~P~C~~~------------- 83 (295)
T PHA02639 17 VKSIYCDKPDDISNGFITELMEKYEIGKLIEYTCNTDYALIGDRFRTCIKDKNNAIWSNKAPFCMLK------------- 83 (295)
T ss_pred ccccCCcCCCCCCCCEEeccCCcccCCCEEEEEeCCCCEECCCCeEEEeCCCCCCEECCCCCEEeec-------------
Confidence 56788999999999998865667889999999999999999999999986 46999999999988
Q ss_pred ecCCCCcccCCCCCCcc-----ccCCCCccCCCeEEE-ccC----CceeeccccCceeEEEEccCCeeecCCCccccccC
Q psy11954 737 WSSGLPTCKGCKTPKKS-----LTRPALSCLPGKRFY-YHR----GIFRLQNTQKVSYTRTCTKRGTWSGHIPTCKAIDC 806 (881)
Q Consensus 737 ws~~~p~C~~C~~p~~~-----~~~~~~~~~g~~v~~-C~~----Gy~l~G~~~~~~~~~~C~~~G~Ws~~~p~C~~v~C 806 (881)
.|+.|+.+ ......|.+|+.++| |++ ||.|.|+ .+++|+++|+|++..|+|+.+.|
T Consensus 84 ---------~C~~Pp~~~nG~i~~~~~~y~~G~~V~y~C~~g~~~gY~L~G~-----~~~~C~~dG~WS~~~P~C~~i~C 149 (295)
T PHA02639 84 ---------ECNDPPSIINGKIYNKREMYKVGDEIYYVCNEHKGVQYSLVGN-----EKITCIQDKSWKPDPPICKMINC 149 (295)
T ss_pred ---------cCcCCCCCCCcEEecCCCceECCCEEEEEeCCCCCCceEECCC-----CeEEECCCCeECCCCCeeeeEEe
Confidence 79988766 123456889999999 999 5999999 89999999999999999999999
Q ss_pred CCCCCCCCceEEE--ccCcccCCCEEEEEcCCCCEEcCCCeeEeCCCCeecCCCCceeccCC
Q psy11954 807 SHPGSIDNGRVII--MNQTTTYNSAVEYHCVPQYQRIGPYLRKCMEDGSWSGDEPRCEKRFN 866 (881)
Q Consensus 807 ~~p~~~~nG~~~~--~~~~~~~g~~v~f~C~~Gy~l~G~~~~~C~~~G~Ws~~~P~C~~~~~ 866 (881)
+.| .+.||.+.. ....+.||++|+|+|++||.|.|+.+++|++||+|++++|+|+....
T Consensus 150 ~~P-~i~nG~v~~~~~~~~~~yg~~V~fsC~~GY~L~Gs~~~tC~~nG~Ws~~~P~C~~~~~ 210 (295)
T PHA02639 150 RFP-ALQNGYINGIPSNKKFYYKTRVGFSCKSGFDLVGEKYSTCNINATWFPSIPTCVRNKP 210 (295)
T ss_pred CCC-CCCCCceEcccCCCceecCCEEEEEcCCCCeEcCCCcEEECCCCeECCCCCeEeccCC
Confidence 977 567887653 23457899999999999999999999999999999999999998663
No 7
>PHA02639 EEV host range protein; Provisional
Probab=99.97 E-value=4.9e-31 Score=278.76 Aligned_cols=181 Identities=30% Similarity=0.631 Sum_probs=161.4
Q ss_pred eecCCCCCCCCCCceeeccCceecCcEEEEEcCCCcEEcCCCceeecc---CCcccCCcccccccccccceecccccccc
Q psy11954 465 NIDCGRLTAIPYGSISYLNETTYLGSEVLYSCSRNYRLVGHPRRSCLE---SKVWSDTAPKCEGKATKDIKVCSNVAVDR 541 (881)
Q Consensus 465 ~i~C~~p~~~~nG~~~~~~~~~~~gs~v~y~C~~Gy~L~G~~~~tC~~---~G~Ws~~~P~C~~~~~~~~~~~~~~~~~~ 541 (881)
.+.|+.|+.+.||.+......|.+|++|+|+|++||+|.|...++|++ +|+|++..|+|+
T Consensus 19 ~i~C~~P~~i~NG~v~~~~~~y~~G~~V~Y~Cn~GY~L~G~~~~~C~~d~~nG~WS~~~P~C~----------------- 81 (295)
T PHA02639 19 SIYCDKPDDISNGFITELMEKYEIGKLIEYTCNTDYALIGDRFRTCIKDKNNAIWSNKAPFCM----------------- 81 (295)
T ss_pred ccCCcCCCCCCCCEEeccCCcccCCCEEEEEeCCCCEECCCCeEEEeCCCCCCEECCCCCEEe-----------------
Confidence 578999999999999876677999999999999999999999999986 469999999999
Q ss_pred ccccCCCCCCCCCeeEEEeccccccCceEEEecCCCCccceeeecCCCCCCcceeeeeecCCccccceeeeccCCCCCcc
Q psy11954 542 REIRCPEPTLPAHSILSVTGNDRLYGRTLIKTADSASSVATYKIGALPTLPAHSILSVTGNDRLYGRTLIKTADSASSVA 621 (881)
Q Consensus 542 ~~i~C~~p~~~~ng~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (881)
.+.|+.|+.+.||.+.. ...
T Consensus 82 -~~~C~~Pp~~~nG~i~~-----------------------------------------------------------~~~ 101 (295)
T PHA02639 82 -LKECNDPPSIINGKIYN-----------------------------------------------------------KRE 101 (295)
T ss_pred -eccCcCCCCCCCcEEec-----------------------------------------------------------CCC
Confidence 78999999999987531 124
Q ss_pred cccCCCEEEEEcCC----CCeecCCCceEecCCCceecCCCeeecccCCCCCCCCCceEEec--CCCeecCcEEEEEcCC
Q psy11954 622 TYKIGALVKYRCER----GYKVEGEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGFTLT--SNATYYGTAVLYECDE 695 (881)
Q Consensus 622 ~~~~Gs~v~~~C~~----GY~l~G~~~~tC~~~G~Ws~~~P~C~~v~C~~p~~~~nG~~~~~--~~~~~~g~~v~y~C~~ 695 (881)
.|.+|++|+|+|++ ||.|.|+..++|+++|+|+++.|+|+++.|+.|. +.||.+... ...+.||++|+|+|++
T Consensus 102 ~y~~G~~V~y~C~~g~~~gY~L~G~~~~~C~~dG~WS~~~P~C~~i~C~~P~-i~nG~v~~~~~~~~~~yg~~V~fsC~~ 180 (295)
T PHA02639 102 MYKVGDEIYYVCNEHKGVQYSLVGNEKITCIQDKSWKPDPPICKMINCRFPA-LQNGYINGIPSNKKFYYKTRVGFSCKS 180 (295)
T ss_pred ceECCCEEEEEeCCCCCCceEECCCCeEEECCCCeECCCCCeeeeEEeCCCC-CCCCceEcccCCCceecCCEEEEEcCC
Confidence 68899999999999 5999999999999999999999999999999774 778877532 3457799999999999
Q ss_pred CceecCCceeeeccCCcccCCCCceeec
Q psy11954 696 NYRLEGHARRLCLENGTWSSGLPTCKGN 723 (881)
Q Consensus 696 Gy~L~G~~~~~C~~~G~Ws~~~P~C~~~ 723 (881)
||.|.|+..++|+++|+|++++|+|+..
T Consensus 181 GY~L~Gs~~~tC~~nG~Ws~~~P~C~~~ 208 (295)
T PHA02639 181 GFDLVGEKYSTCNINATWFPSIPTCVRN 208 (295)
T ss_pred CCeEcCCCcEEECCCCeECCCCCeEecc
Confidence 9999999999999999999999999976
No 8
>PHA02831 EEV host range protein; Provisional
Probab=99.95 E-value=1.6e-27 Score=245.98 Aligned_cols=168 Identities=21% Similarity=0.512 Sum_probs=142.9
Q ss_pred ecccccCCCeEEEECCCCceeeCCceeEeCCCcccCCCCcccccccCCCCCCcceeeeehhhhhhhccccccccCCCCCc
Q psy11954 293 GTVSTKLGSTISYACPEGNMLVGSATRTCKEGFWTGVAPTCQYFQLQPMDVPNLVLYLFLSKLFRESYERLNVDCGKLEH 372 (881)
Q Consensus 293 ~~~~~~~gs~v~y~C~~Gy~l~G~~~~~C~~G~Ws~~~P~C~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~ 372 (881)
....|.+|++|+|+|++||++ ..++|.+|.|++. |.|.. .+.|+.|+.
T Consensus 36 ~~~~Y~~Gs~V~Y~C~~GY~~---~~itC~dG~WS~~-P~C~~----------------------------~~~C~~Pp~ 83 (268)
T PHA02831 36 ENKVYEENENLEYKCNNNFDK---VFVTCNNGSWSTK-NMCIG----------------------------KRNCKDPVT 83 (268)
T ss_pred cCcccCCCCEEEEECCCCCEe---eeEEeCCCccCCC-Ccccc----------------------------cccCcCCCC
Confidence 334799999999999999985 4789999999975 77753 168999999
Q ss_pred CCCceEEecCCcccCCcEEEEEeC----CCcEEeCcceEEecCCCcccCCCCcccccccCCCCCcCCCeEEcCCCCCCCe
Q psy11954 373 IEHGTVTLETTRTTHGAVAIYACH----ENYTLIGETRRVCGDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGRRTGSV 448 (881)
Q Consensus 373 ~~nG~~~~~~~~~~~g~~~~~~C~----~Gy~l~G~~~~~C~~~G~Ws~~~P~C~~~~C~~p~~~~ng~~~~~~~~~gs~ 448 (881)
+.||.+......|.+|+.|+|+|+ +||.|+|..+++|+ +|+|++..|+|+++.|+.|. +.||.+
T Consensus 84 i~NG~i~~~~~~Y~~Gd~VtYsC~~g~~~GY~LvG~s~~tC~-dG~WS~~~P~C~~i~C~~P~-i~NG~i---------- 151 (268)
T PHA02831 84 ILNGYIKNKKDQYSFGDSVTYACKVNKLEKYSIVGNETVKCI-NKQWVPKYPVCKLIRCKYPA-LQNGFL---------- 151 (268)
T ss_pred CCCCEEeccCCceeCCCEEEEECCCCCCCCeeEcCCceeEeC-CCcCCCCCCeeeEeeCCCCC-CCCCcc----------
Confidence 999999876667999999999999 69999999999996 89999999999998998653 556543
Q ss_pred EEEEcCCCceeeCceeeecCCCCCCCCCCceeeccCceecCcEEEEEcCCCcEEcCCCceeeccCCcccCCccccccccc
Q psy11954 449 ATYSCEPGFILFGSNVNIDCGRLTAIPYGSISYLNETTYLGSEVLYSCSRNYRLVGHPRRSCLESKVWSDTAPKCEGKAT 528 (881)
Q Consensus 449 ~~y~C~~Gy~l~g~~~~i~C~~p~~~~nG~~~~~~~~~~~gs~v~y~C~~Gy~L~G~~~~tC~~~G~Ws~~~P~C~~~~~ 528 (881)
......|.+|++|+|+|++||.|.|+.+++|+++|+|+++.|.|+
T Consensus 152 -------------------------------~~~~~~y~~G~~Vty~C~~GY~L~Gss~~tC~~nG~Wsp~~P~C~---- 196 (268)
T PHA02831 152 -------------------------------NVFEKKFYYGDIVNFKCKKGFILLGSSVSTCDINSIWYPGIPKCV---- 196 (268)
T ss_pred -------------------------------ccCCCceecCCEEEEEcCCCCEECCCccEEECCCCeECCCCCCcc----
Confidence 222345789999999999999999999999999999999999999
Q ss_pred ccceeccccccccccccCCCCCCCC
Q psy11954 529 KDIKVCSNVAVDRREIRCPEPTLPA 553 (881)
Q Consensus 529 ~~~~~~~~~~~~~~~i~C~~p~~~~ 553 (881)
+..|+.|..|.
T Consensus 197 --------------~~~~~~~~~~~ 207 (268)
T PHA02831 197 --------------KDKVHNEIQPN 207 (268)
T ss_pred --------------CcccCCCCCcc
Confidence 67788665543
No 9
>PHA02831 EEV host range protein; Provisional
Probab=99.94 E-value=7.9e-27 Score=240.97 Aligned_cols=165 Identities=25% Similarity=0.497 Sum_probs=142.5
Q ss_pred CcccccCCCEEEEEcCCCCeecCCCceEecCCCceecCCCeee-cccCCCCCCCCCceEEecCCCeecCcEEEEEcC---
Q psy11954 619 SVATYKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECI-YVDCGNPETVPNGGFTLTSNATYYGTAVLYECD--- 694 (881)
Q Consensus 619 ~~~~~~~Gs~v~~~C~~GY~l~G~~~~tC~~~G~Ws~~~P~C~-~v~C~~p~~~~nG~~~~~~~~~~~g~~v~y~C~--- 694 (881)
....|.+|++|+|+|++||++ ..++|. +|+|++ .|.|. .+.|+.|+.+.||.+......|.+|++|+|+|+
T Consensus 36 ~~~~Y~~Gs~V~Y~C~~GY~~---~~itC~-dG~WS~-~P~C~~~~~C~~Pp~i~NG~i~~~~~~Y~~Gd~VtYsC~~g~ 110 (268)
T PHA02831 36 ENKVYEENENLEYKCNNNFDK---VFVTCN-NGSWST-KNMCIGKRNCKDPVTILNGYIKNKKDQYSFGDSVTYACKVNK 110 (268)
T ss_pred cCcccCCCCEEEEECCCCCEe---eeEEeC-CCccCC-CCcccccccCcCCCCCCCCEEeccCCceeCCCEEEEECCCCC
Confidence 346799999999999999985 378996 999997 47786 468999999999999876667889999999999
Q ss_pred -CCceecCCceeeeccCCcccCCCCceeecccCceeeeecCCeecCCCCcccCCCCCCcc--cc--CCCCccCCCeEEE-
Q psy11954 695 -ENYRLEGHARRLCLENGTWSSGLPTCKGNEGHARRLCLENGTWSSGLPTCKGCKTPKKS--LT--RPALSCLPGKRFY- 768 (881)
Q Consensus 695 -~Gy~L~G~~~~~C~~~G~Ws~~~P~C~~~~g~~~~~C~~~g~ws~~~p~C~~C~~p~~~--~~--~~~~~~~g~~v~~- 768 (881)
+||.|+|+++++|+ +|+|++++|+|+.+ .|+.|... .. ....|.+|++++|
T Consensus 111 ~~GY~LvG~s~~tC~-dG~WS~~~P~C~~i----------------------~C~~P~i~NG~i~~~~~~y~~G~~Vty~ 167 (268)
T PHA02831 111 LEKYSIVGNETVKCI-NKQWVPKYPVCKLI----------------------RCKYPALQNGFLNVFEKKFYYGDIVNFK 167 (268)
T ss_pred CCCeeEcCCceeEeC-CCcCCCCCCeeeEe----------------------eCCCCCCCCCccccCCCceecCCEEEEE
Confidence 69999999999996 99999999999998 79888643 11 2456889999999
Q ss_pred ccCCceeeccccCceeEEEEccCCeeecCCCccccccCCCCCCCCCceE
Q psy11954 769 YHRGIFRLQNTQKVSYTRTCTKRGTWSGHIPTCKAIDCSHPGSIDNGRV 817 (881)
Q Consensus 769 C~~Gy~l~G~~~~~~~~~~C~~~G~Ws~~~p~C~~v~C~~p~~~~nG~~ 817 (881)
|+.||.|.|+ .+++|+.+|+|++.+|.|+...|++|. +.|+..
T Consensus 168 C~~GY~L~Gs-----s~~tC~~nG~Wsp~~P~C~~~~~~~~~-~~~~~~ 210 (268)
T PHA02831 168 CKKGFILLGS-----SVSTCDINSIWYPGIPKCVKDKVHNEI-QPNYLF 210 (268)
T ss_pred cCCCCEECCC-----ccEEECCCCeECCCCCCccCcccCCCC-Ccccee
Confidence 9999999999 899999999999999999999998664 445543
No 10
>PHA02817 EEV Host range protein; Provisional
Probab=99.84 E-value=1.4e-20 Score=189.40 Aligned_cols=102 Identities=29% Similarity=0.677 Sum_probs=92.9
Q ss_pred ccccCCCEEEEEcCCC-----CeecCCCceEecCCCceecCCCeeecccCCCCCCCCCceEEe--cCCCeecCcEEEEEc
Q psy11954 621 ATYKIGALVKYRCERG-----YKVEGEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGFTL--TSNATYYGTAVLYEC 693 (881)
Q Consensus 621 ~~~~~Gs~v~~~C~~G-----Y~l~G~~~~tC~~~G~Ws~~~P~C~~v~C~~p~~~~nG~~~~--~~~~~~~g~~v~y~C 693 (881)
..|.+|++|+|+|++| |.|.|+..++|+.+|+|+++.|+|+++.|+.|. +.||.+.. ....+.+|++|+|+|
T Consensus 40 ~~Y~~Gd~Vty~C~~G~~~~gY~L~G~~~i~C~~dG~Ws~~~P~C~~v~C~~P~-i~NG~v~~~~~~~~y~yg~~Vty~C 118 (225)
T PHA02817 40 TEYNIGSNVTFFCGNNTRGVRYTLVGEKNIICEKDGKWNKEFPVCKIIRCRFPA-LQNGFVNGIPDSKKFYYESEVSFSC 118 (225)
T ss_pred CceeCCCEEEEEeCCCCCCCCEEECCCCeEEECCCCcCCCCCCeeeeeECCCCC-CcCceeEccccCCceEcCCEEEEEc
Confidence 4688999999999997 899999999999999999989999999999886 78998864 235678999999999
Q ss_pred CCCceecCCceeeeccCCcccCCCCceeec
Q psy11954 694 DENYRLEGHARRLCLENGTWSSGLPTCKGN 723 (881)
Q Consensus 694 ~~Gy~L~G~~~~~C~~~G~Ws~~~P~C~~~ 723 (881)
++||.|.|+..++|+++|+|+++.|+|+..
T Consensus 119 ~~Gy~L~G~~~~tC~~~G~WSp~~P~C~~~ 148 (225)
T PHA02817 119 KPGFVLIGTKYSVCGINSSWIPKVPICSRD 148 (225)
T ss_pred CCCCEEcCCCceEECCCCeECCCCCEeecC
Confidence 999999999999999999999999999875
No 11
>PHA02817 EEV Host range protein; Provisional
Probab=99.82 E-value=4.6e-20 Score=185.63 Aligned_cols=125 Identities=20% Similarity=0.460 Sum_probs=108.6
Q ss_pred CeeecccCCCCCCCCCceEEecCCCeecCcEEEEEcCCC-----ceecCCceeeeccCCcccCCCCceeecccCceeeee
Q psy11954 658 PECIYVDCGNPETVPNGGFTLTSNATYYGTAVLYECDEN-----YRLEGHARRLCLENGTWSSGLPTCKGNEGHARRLCL 732 (881)
Q Consensus 658 P~C~~v~C~~p~~~~nG~~~~~~~~~~~g~~v~y~C~~G-----y~L~G~~~~~C~~~G~Ws~~~P~C~~~~g~~~~~C~ 732 (881)
-.|+++.|+.|+.+.||.+......|.+|++|+|+|++| |+|+|+..++|+++|+|++++|+|+.+
T Consensus 17 ~~C~~~~C~~PP~i~NG~i~~~~~~Y~~Gd~Vty~C~~G~~~~gY~L~G~~~i~C~~dG~Ws~~~P~C~~v--------- 87 (225)
T PHA02817 17 SLCDLNKCCYPPSIKNGYIYNKKTEYNIGSNVTFFCGNNTRGVRYTLVGEKNIICEKDGKWNKEFPVCKII--------- 87 (225)
T ss_pred CEecCcCCCCCCCCCCCEEecCCCceeCCCEEEEEeCCCCCCCCEEECCCCeEEECCCCcCCCCCCeeeee---------
Confidence 458889999999999999876566788999999999997 999999999999999999989999988
Q ss_pred cCCeecCCCCcccCCCCCCcc--c----cCCCCccCCCeEEE-ccCCceeeccccCceeEEEEccCCeeecCCCcccccc
Q psy11954 733 ENGTWSSGLPTCKGCKTPKKS--L----TRPALSCLPGKRFY-YHRGIFRLQNTQKVSYTRTCTKRGTWSGHIPTCKAID 805 (881)
Q Consensus 733 ~~g~ws~~~p~C~~C~~p~~~--~----~~~~~~~~g~~v~~-C~~Gy~l~G~~~~~~~~~~C~~~G~Ws~~~p~C~~v~ 805 (881)
.|+.|... . .....|.+|++++| |++||.|.|+ ..++|+++|+|+++.|+|+...
T Consensus 88 -------------~C~~P~i~NG~v~~~~~~~~y~yg~~Vty~C~~Gy~L~G~-----~~~tC~~~G~WSp~~P~C~~~~ 149 (225)
T PHA02817 88 -------------RCRFPALQNGFVNGIPDSKKFYYESEVSFSCKPGFVLIGT-----KYSVCGINSSWIPKVPICSRDN 149 (225)
T ss_pred -------------ECCCCCCcCceeEccccCCceEcCCEEEEEcCCCCEEcCC-----CceEECCCCeECCCCCEeecCC
Confidence 79887643 1 12356889999999 9999999999 8999999999999999999765
Q ss_pred CCCC
Q psy11954 806 CSHP 809 (881)
Q Consensus 806 C~~p 809 (881)
+...
T Consensus 150 ~~~~ 153 (225)
T PHA02817 150 ITYN 153 (225)
T ss_pred CCCC
Confidence 5444
No 12
>cd00057 FA58C Substituted updates: Jan 31, 2002
Probab=99.51 E-value=1.4e-13 Score=132.89 Aligned_cols=132 Identities=15% Similarity=0.169 Sum_probs=97.3
Q ss_pred CCCCceeccCCC-CCCCCCCcCCCCCCCcCCCceeccCCCCCCcEEEEcCCeEEEEEEEEEccCCC-CCCCCcccEEEEc
Q psy11954 24 LRRPTNQSSTIR-GAPSSNANDGELTTVHDGKRCTETQKEVSPWWQVDLLRPYPIRIVRITTRGCC-GHQPLQDLEIRVG 101 (881)
Q Consensus 24 ~~k~a~qSS~~~-~~~a~~AvDG~~~~~~~~~~c~~t~~~~~pWw~VDLg~~~~i~~V~i~nr~d~-~~~~~~~~~i~v~ 101 (881)
..+++++||... .+.|.+| ||+..+.|... ..+.++|++|||++++.|.+|+|..|.+. ..++...|+|.++
T Consensus 10 ~~~~vtaSS~~~~~~~~~~~-dg~~~t~W~~~-----~~~~~~wi~vDL~~~~~i~~v~i~~~~~~~~~~~~~~~~i~~s 83 (143)
T cd00057 10 ADDQITASSSYSSGWEASRA-RLNSDNAWTPA-----VNDPPQWLQVDLGKTRRVTGIQTQGRKGGGSSEWVTSYKVQYS 83 (143)
T ss_pred CCCCEEEEecCCCCCCcCee-ecCCCCcccCC-----CCCCCceEEEECCCCEEEEEEEEccCCCCCccCeeEEEEEEEE
Confidence 357889999887 6889999 99999888543 22689999999999999999999998753 3467889999998
Q ss_pred cCCCCCCCCCccCCCCCCCCCCCcccceeeccCCCCCCCceeeeccCccCCCceEEEeCCCCCcceEEEEEEecCccceE
Q psy11954 102 NSTDLQKNPLCAWFPGTLGHQPLQDLEIRVGNSTDLQKNPLCAWFPGTLEEGITKSFTCARTLVGQNVFIQLVGVEGSLS 181 (881)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gRyV~i~~~g~~~~l~ 181 (881)
++.. .|+.+.+. .....+.+.........+.+..++.+|||||.+.+....++
T Consensus 84 ~dg~--------------~W~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~pv~aRyvRl~~~~~~~~~~ 136 (143)
T cd00057 84 LDGE--------------TWTTYKDK-------------GEEKVFTGNSDGSTPVTNDFPPPIVARYIRILPTTWNGNIS 136 (143)
T ss_pred CCCC--------------CEeEEEcC-------------CcEEEEeCCcCCCeEEEEeCCCCEEEEEEEEEEeecCCccE
Confidence 7733 23333210 00011111122234667778777999999999998777999
Q ss_pred eeEEEeec
Q psy11954 182 LCEVEIFT 189 (881)
Q Consensus 182 l~EveV~g 189 (881)
| ||||||
T Consensus 137 l-e~evyG 143 (143)
T cd00057 137 L-RLELYG 143 (143)
T ss_pred E-EEEEcC
Confidence 9 999997
No 13
>cd03601 CLECT_TC14_like C-type lectin-like domain (CTLD) of the type found in lectins TC14, TC14-2, TC14-3, and TC14-4 from the budding tunicate Polyandrocarpa misakiensis and PfG6 from the Acorn worm. CLECT_TC14_like: C-type lectin-like domain (CTLD) of the type found in lectins TC14, TC14-2, TC14-3, and TC14-4 from the budding tunicate Polyandrocarpa misakiensis and PfG6 from the Acorn worm. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. TC14 is homodimeric. The CTLD of TC14 binds D-galactose and D-fucose. TC14 is expressed constitutively by multipotent epithelial and mesenchymal cells and plays in role during budding, in inducing the aggregation of undifferentiated mesenchymal cells to give rise to epithelial forming tissue. TC14-2 and TC14-3 shows calcium-dependent galactose binding activity. TC14-3 is a cytostatic factor which blocks cell growth and dedifferentiation of the atrial epithelium during asexual reproducti
Probab=99.19 E-value=3.5e-11 Score=112.24 Aligned_cols=69 Identities=26% Similarity=0.422 Sum_probs=57.8
Q ss_pred ceEEEEeeeCCCCccccEEEecCCCC--CCCCCCCCCCCCCCCCCCeEEEeCCCCccccccccccccccceeec
Q psy11954 204 LLVWIGAQKDPGITARTWKWVDGEVV--TKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQH 275 (881)
Q Consensus 204 ~~~WiGl~~~~~~~~~~w~W~dg~~~--~~~~W~~~ep~~~~~~~~Cv~i~~~~~~~Wnd~~C~~~~~~~iC~~ 275 (881)
..|||||++.. ..++.|.|+||+++ +|++|+++||++..+.|+||+|... .++|+|..|.. .+.|||+.
T Consensus 49 ~~~WIGl~d~~-~~~g~~~W~dG~~~~~~y~~W~~geP~~~~~~e~Cv~~~~~-~~~W~d~~C~~-~~~fICek 119 (119)
T cd03601 49 HGYWVGADNLQ-DGEYDFLWNDGVSLPTDSDLWAPNEPSNPQSRQLCVQLWSK-YNLLDDEYCGR-AKRVICEK 119 (119)
T ss_pred ccEEEEeccCC-CCCCCeEeCCCCCcCCCCCccCCCcCcCcCCCcCCeEEeCC-CCCEeCccCCC-CceeeecC
Confidence 46999999830 46889999999988 6999999999987778999999654 35899999996 77899973
No 14
>PF00754 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000421 Blood coagulation factors V and VIII contain a C-terminal, twice repeated, domain of about 150 amino acids, which is called F5/8 type C, FA58C, or C1/C2- like domain. In the Dictyostelium discoideum (Slime mold) cell adhesion protein discoidin, a related domain, named discoidin I-like domain, DLD, or DS, has been found which shares a common C-terminal region of about 110 amino acids with the FA58C domain, but whose N-terminal 40 amino acids are much less conserved. Similar domains have been detected in other extracellular and membrane proteins [, , ] In coagulation factors V and VIII the repeated domains compose part of a larger functional domain which promotes binding to anionic phospholipids on the surface of platelets and endothelial cells []. The C-terminal domain of the second FA58C repeat (C2) of coagulation factor VIII has been shown to be responsible for phosphatidylserine-binding and essential for activity [, ]. It forms an amphipathic alpha-helix, which binds to the membrane []. FA58C contains two conserved cysteines in most proteins, which link the extremities of the domain by a disulphide bond [, , ]. A further disulphide bond is located near the C-terminal of the second FA58C domain in MFGM Q08431 from SWISSPROT []. +------------------------------------------------------------------------+ | +-+ | | | | | CxPLGxxQITASxxxxxRLxxxWxxxxWxxxxxxQGxxxxxxxxxxxxGNxxxxxxxxxxRxPxcxcLRxExGC 'C': conserved cysteine involved in a disulphide bond. 'c': cysteine involved in a disulphide bond in MFGM Q08431 from SWISSPROT. 'x': any amino acid. upper case letters: conserved residues. ; GO: 0007155 cell adhesion; PDB: 2J22_A 3CQO_C 1SDD_B 2VCA_A 2VC9_A 2VCC_A 2VCB_A 2J1E_A 2J7M_A 2J1A_A ....
Probab=99.13 E-value=7.2e-11 Score=111.44 Aligned_cols=121 Identities=23% Similarity=0.343 Sum_probs=86.5
Q ss_pred ceeccCCCCCC----CCCCcCCCCCCCcCCCceeccCCCCCCcEEEEcCCeEEEEEEEEEccCCCCCCCCcccEEEEccC
Q psy11954 28 TNQSSTIRGAP----SSNANDGELTTVHDGKRCTETQKEVSPWWQVDLLRPYPIRIVRITTRGCCGHQPLQDLEIRVGNS 103 (881)
Q Consensus 28 a~qSS~~~~~~----a~~AvDG~~~~~~~~~~c~~t~~~~~pWw~VDLg~~~~i~~V~i~nr~d~~~~~~~~~~i~v~~~ 103 (881)
+++||.+.... +.+|+||+..+.|.... ....+||+|||++.+.|++|+|+.|.+....+...++|.++++
T Consensus 2 itaSS~~~~~~~~~~~~~~~Dg~~~t~W~~~~-----~~~~~~i~idl~~~~~i~~i~i~~~~~~~~~~~~~~~i~~s~d 76 (129)
T PF00754_consen 2 ITASSSYSGYYSAEPASNAFDGDPSTAWCSNW-----DDSPQWIQIDLGKPYTISGISIQFRNDGNNGRPKSFKIEYSND 76 (129)
T ss_dssp EEESSCSTTSSSGGGGGGGGSSSTTSSEEESS-----SSSTEEEEEEEEEEEEEEEEEEEEESSTTTEEEEEEEEEEESS
T ss_pred EEEEEEeCCCCCcchHHheEeCCCCCEEECCC-----CCCCceEEEEeeeeEecceeeecccccccceeeeeeeeeeecc
Confidence 56788876533 89999999988885432 6799999999999999999999999875544778889888866
Q ss_pred CCCCCCCCccCCCCCCCCCCCcccceeeccCCCCCCCceeeeccCccCCCceEEEeCCCCCcceEEEEEEe---cCccce
Q psy11954 104 TDLQKNPLCAWFPGTLGHQPLQDLEIRVGNSTDLQKNPLCAWFPGTLEEGITKSFTCARTLVGQNVFIQLV---GVEGSL 180 (881)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gRyV~i~~~---g~~~~l 180 (881)
.. .|.++.+. +......+....+....++.+|||||.+. +....+
T Consensus 77 g~--------------~w~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~ryiri~~~~~~~~~~~~ 124 (129)
T PF00754_consen 77 GS--------------NWTTVASQ------------------FYGNTNSGSVVTISFFPPVKARYIRITVTSWNGNNGWV 124 (129)
T ss_dssp SS--------------SEEEEEET------------------EEEESSSSSSEEEEEEEEEEEEEEEEEEEEEESCSSEE
T ss_pred cc--------------cccccccc------------------eeeccCCCceEEEEeCCCeEEEEEEEEEEEECCCCceE
Confidence 32 12222110 01112233344445556899999999995 466689
Q ss_pred EeeEE
Q psy11954 181 SLCEV 185 (881)
Q Consensus 181 ~l~Ev 185 (881)
+|+||
T Consensus 125 ~i~Ei 129 (129)
T PF00754_consen 125 SIAEI 129 (129)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 99997
No 15
>cd00033 CCP Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system. SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.
Probab=99.10 E-value=1.5e-10 Score=92.54 Aligned_cols=57 Identities=35% Similarity=0.723 Sum_probs=52.1
Q ss_pred CCCCCCCCCceEEEccCcccCCCEEEEEcCCCCEEcCCCeeEeCCCCeecCCCCcee
Q psy11954 806 CSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCMEDGSWSGDEPRCE 862 (881)
Q Consensus 806 C~~p~~~~nG~~~~~~~~~~~g~~v~f~C~~Gy~l~G~~~~~C~~~G~Ws~~~P~C~ 862 (881)
|+.|+.+.||.+......+.+|++|+|.|++||.|.|+..++|+.+|+|++..|+|+
T Consensus 1 C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~Gy~~~g~~~~~C~~~g~W~~~~p~C~ 57 (57)
T cd00033 1 CPPPPVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTCE 57 (57)
T ss_pred CcCCCCCCCcEEecCCCcccCCCEEEEECCCCCeEeCCCeeEECCCCeECCCCcccC
Confidence 788999999998865456889999999999999999999999999999999999995
No 16
>smart00032 CCP Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR). The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.
Probab=99.10 E-value=1.6e-10 Score=92.16 Aligned_cols=56 Identities=39% Similarity=0.835 Sum_probs=51.0
Q ss_pred CCCCCCCCCceEEEcc-CcccCCCEEEEEcCCCCEEcCCCeeEeCCCCeecCCCCce
Q psy11954 806 CSHPGSIDNGRVIIMN-QTTTYNSAVEYHCVPQYQRIGPYLRKCMEDGSWSGDEPRC 861 (881)
Q Consensus 806 C~~p~~~~nG~~~~~~-~~~~~g~~v~f~C~~Gy~l~G~~~~~C~~~G~Ws~~~P~C 861 (881)
|+.|+.+.||.+.... ..+.+|++|+|.|++||.|.|...++|+.+|+|++..|+|
T Consensus 1 C~~p~~~~~g~~~~~~~~~~~~g~~~~~~C~~Gy~l~g~~~~~C~~~g~Ws~~~p~C 57 (57)
T smart00032 1 CPPPPDIENGTITSSNKGTYSVGDTVTYSCNPGYTLIGSSTITCLEDGTWSPPAPTC 57 (57)
T ss_pred CcCCCCCCCCEEecCCCCeecCCCEEEEEcCCCCEEcCCCeeEECCCCEECCCCCcC
Confidence 7888889999988654 5688999999999999999999999999999999988888
No 17
>PF00084 Sushi: Sushi domain (SCR repeat); InterPro: IPR000436 Sushi domains are also known as Complement control protein (CCP) modules, or short consensus repeats (SCR), exist in a wide variety of complement and adhesion proteins. The structure is known for this domain, it is based on a beta-sandwich arrangement; one face made up of three beta-strands hydrogen-bonded to form a triple-stranded region at its centre and the other face formed from two separate beta-strands []. CD21 (also called C3d receptor, CR2, Epstein Barr virus receptor or EBV-R) is the receptor for EBV and for C3d, C3dg and iC3b. Complement components may activate B cells through CD21. CD21 is part of a large signal-transduction complex that also involves CD19, CD81, and Leu13. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Complement decay-accelerating factor (Antigen CD55) belongs to the Cromer blood group system and is associated with Cr(a), Dr(a), Es(a), Tc(a/b/c), Wd(a), WES(a/b), IFC and UMC antigens. Complement receptor type 1 (C3b/C4b receptor) (Antigen CD35) belongs to the Knops blood group system and is associated with Kn(a/b), McC(a), Sl(a) and Yk(a) antigens. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; PDB: 1HFH_A 1HFI_A 1E5G_A 2UWN_A 2V8E_A 2XWB_H 3HS0_I 2OK5_A 2XWJ_J 3HRZ_D ....
Probab=99.10 E-value=5.6e-11 Score=94.66 Aligned_cols=56 Identities=34% Similarity=0.767 Sum_probs=50.6
Q ss_pred CCCCCCCCCceEEEccCcccCCCEEEEEcCCCCEEcCCCeeEeCCCCeecCCCCce
Q psy11954 806 CSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCMEDGSWSGDEPRC 861 (881)
Q Consensus 806 C~~p~~~~nG~~~~~~~~~~~g~~v~f~C~~Gy~l~G~~~~~C~~~G~Ws~~~P~C 861 (881)
|+.|+.+.||.+...+..+.+|++|+|+|++||.|.|+..++|+++|+|++..|+|
T Consensus 1 C~~P~~~~~~~~~~~~~~~~~g~~~~~~C~~Gy~~~g~~~~~C~~~g~W~~~~p~C 56 (56)
T PF00084_consen 1 CPPPPPIPNGSISCTNNPYSYGSTVTFSCNPGYELSGSSTITCQSNGQWSPPPPTC 56 (56)
T ss_dssp EESESCBTTEEEESSSSSEETTEEEEEEESTTEEEESSSEEEEETTSEESSTTSEE
T ss_pred CcCCCCCCCcEEecCCCCccCCCEEEEcCCCCCEecCCCEEEECCCCEECCCCCCC
Confidence 67888899997665556689999999999999999999999999999999998988
No 18
>cd03591 CLECT_collectin_like C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1). CLECT_collectin_like: C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. The CTLDs of these collectins bind carbohydrates on surfaces (e.g. pathogens, allergens, necrotic, or apoptotic cells) and mediate functions associated with killing and phagocytosis. MBPs recognize high mannose oligosaccharides in a calcium dependent manner, bind to a broad range of pathogens, and trigger cell killing by activating the complement pathway. MBP also acts directly as an opsonin. SP-A and SP-D in addition to functioning as host defense components, a
Probab=99.09 E-value=1.2e-10 Score=107.66 Aligned_cols=68 Identities=29% Similarity=0.628 Sum_probs=58.7
Q ss_pred cceEEEEeeeCCCCccccEEEecCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCccccccccccccccceeec
Q psy11954 203 TLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQH 275 (881)
Q Consensus 203 ~~~~WiGl~~~~~~~~~~w~W~dg~~~~~~~W~~~ep~~~~~~~~Cv~i~~~~~~~Wnd~~C~~~~~~~iC~~ 275 (881)
...+||||++. ..++.|+|+||+++.|++|+++||++..+.++||.|.. .++|+|..|.. .+.|||+.
T Consensus 47 ~~~~WiGl~~~--~~~~~~~w~dg~~~~y~~W~~~ep~~~~~~~~Cv~~~~--~~~W~~~~C~~-~~~fICe~ 114 (114)
T cd03591 47 NTYAFIGITDL--ETEGQFVYLDGGPLTYTNWKPGEPNNAGGGEDCVEMYT--SGKWNDVACNL-TRLFVCEF 114 (114)
T ss_pred CccEEEecccC--CcCCcEEeCCCCCcccCCcCCCCCCCCCCCCCeEEECC--CCcCcCccCCC-CeeEEeeC
Confidence 45699999984 46889999999999999999999998766789999973 45899999986 78899974
No 19
>cd03592 CLECT_selectins_like C-type lectin-like domain (CTLD) of the type found in the type 1 transmembrane proteins: P(platlet)-, E(endothelial)-, and L(leukocyte)- selectins (sels). CLECT_selectins_like: C-type lectin-like domain (CTLD) of the type found in the type 1 transmembrane proteins: P(platlet)-, E(endothelial)-, and L(leukocyte)- selectins (sels). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. P- E- and L-sels are cell adhesion receptors that mediate the initial attachment, tethering, and rolling of lymphocytes on inflamed vascular walls enabling subsequent lymphocyte adhesion and transmigration. L- sel is expressed constitutively on most leukocytes. P-sel is stored in the Weibel-Palade bodies of endothelial cells and in the alpha granules of platlets. E- sels are present on endothelial cells. Following platelet and/or endothelial cell activation P- sel is rapidly translocated to the cell surface and E-sel exp
Probab=99.02 E-value=3.2e-10 Score=105.07 Aligned_cols=68 Identities=25% Similarity=0.432 Sum_probs=57.8
Q ss_pred ceEEEEeeeCCCCccccEEEecCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCccccccccccccccceeec
Q psy11954 204 LLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQH 275 (881)
Q Consensus 204 ~~~WiGl~~~~~~~~~~w~W~dg~~~~~~~W~~~ep~~~~~~~~Cv~i~~~~~~~Wnd~~C~~~~~~~iC~~ 275 (881)
..|||||++. ..++.|.|+||+++.|.+|+++||++.. +++||.|.....++|+|..|.. .+.|||+.
T Consensus 48 ~~~WiG~~~~--~~~~~W~~~dg~~~~y~~W~~geP~~~~-~~~Cv~~~~~~~g~W~d~~C~~-~~~fICe~ 115 (115)
T cd03592 48 GYYWIDGNDI--NNEGTWVDTDKKELEYKNWAPGEPNNGR-NENCLEIYIKDNGKWNDEPCSK-KKSAICYT 115 (115)
T ss_pred CCEEEeCccC--CccCeEEeCCCCcccccccCCCCCCCCC-CCCceEEccCCCCCCcCcCCCC-CccceeCC
Confidence 4799999984 3578899999999999999999999865 7899999764456899999986 78899973
No 20
>cd03603 CLECT_VCBS A bacterial subgroup of the C-type lectin-like (CTLD) domain; a subgroup of bacterial protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. CLECT_VCBS: A bacterial subgroup of the C-type lectin-like (CTLD) domain; a subgroup of bacterial protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. Many CTLDs are calcium-dependent carbohydrate binding modules; other CTLDs bind protein ligands, lipids, and inorganic surfaces including CaCO3 and ice. Bacterial CTLDs within this group are functionally uncharacterized. Animal C-type lectins are involved in such functions as extracellular matrix organization, endocytosis, complement activation, pathogen recognition, and cell-cell interactions. CTLDs may bind a variety of carbohydrate ligands including mannose, N-acetylglucosamine, galactose, N-acetylgalactosamine, and fucose. CTLDs associate with each other through several different surface
Probab=99.01 E-value=5.8e-10 Score=103.79 Aligned_cols=69 Identities=33% Similarity=0.632 Sum_probs=58.2
Q ss_pred cceEEEEeeeCCCCccccEEEecCCCCCCCCCCCCCC-CCCCCCCCeEEEeCC--CCccccccccc-cccccceee
Q psy11954 203 TLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQP-NNYNGEQNCVVLDGG--RGWLWNDVGCK-LDYLHWICQ 274 (881)
Q Consensus 203 ~~~~WiGl~~~~~~~~~~w~W~dg~~~~~~~W~~~ep-~~~~~~~~Cv~i~~~--~~~~Wnd~~C~-~~~~~~iC~ 274 (881)
...+||||++. ..++.|+|+||+++.|.+|..+|| ++..+.++||.|... ..++|+|..|+ . .+.|||+
T Consensus 45 ~~~~WiG~~~~--~~~~~w~W~dg~~~~~~~W~~~eP~~~~~~~~~Cv~~~~~~~~~~~W~d~~C~~~-~~~~iCe 117 (118)
T cd03603 45 YGASWIGASDA--ATEGTWKWSDGEESTYTNWGSGEPHNNGGGNEDYAAINHFPGISGKWNDLANSYN-TLGYVIE 117 (118)
T ss_pred CCCEEEeeecC--CCCCceEeCCCCcCCCCCcCCCCCCCCCCCCcCeEEeecCCCCCCcCccCCCCcc-ccceEEe
Confidence 45799999984 357899999999999999999999 776677999999642 35689999998 6 7789996
No 21
>cd03589 CLECT_CEL-1_like C-type lectin-like domain (CTLD) of the type found in CEL-1 from Cucumaria echinata and Echinoidin from Anthocidaris crassispina. CLECT_CEL-1_like: C-type lectin-like domain (CTLD) of the type found in CEL-1 from Cucumaria echinata and Echinoidin from Anthocidaris crassispina. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. The CEL-1 CTLD binds three calcium ions and has a high specificity for N-acteylgalactosamine (GalNAc). CEL-1 exhibits strong cytotoxicity which is inhibited by GalNAc. This protein may play a role as a toxin defending against predation. Echinoidin is found in the coelomic fluid of the sea urchin and is specific for GalBeta1-3GalNAc. Echinoidin has a cell adhesive activity towards human cancer cells which is not mediated through the CTLD. Both CEL-1 and Echinoidin are multimeric proteins comprised of multiple dimers linked by disulfide bonds.
Probab=99.01 E-value=5.2e-10 Score=107.15 Aligned_cols=71 Identities=31% Similarity=0.770 Sum_probs=60.5
Q ss_pred ccceEEEEeeeCCCCccccEEEecCCCCCCCCCCCCCCCCCCCCCCeEEEeCCC--Cccccccccccccccceeec
Q psy11954 202 KTLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGR--GWLWNDVGCKLDYLHWICQH 275 (881)
Q Consensus 202 ~~~~~WiGl~~~~~~~~~~w~W~dg~~~~~~~W~~~ep~~~~~~~~Cv~i~~~~--~~~Wnd~~C~~~~~~~iC~~ 275 (881)
....|||||++. ..++.|.|+||+++.|.+|+++||++..+.++||+|.... .++|+|..|.. .+.|||+.
T Consensus 65 ~~~~~WiGl~~~--~~~~~~~W~dG~~~~~~~W~~~~P~~~~~~~~C~~~~~~~~~~~~W~d~~C~~-~~~fIC~~ 137 (137)
T cd03589 65 TPYGLWIGLHDR--TSEGPFEWTDGSPVDFTKWAGGQPDNYGGNEDCVQMWRRGDAGQSWNDMPCDA-VFPYICKM 137 (137)
T ss_pred CCCcEEEeeecC--CccCceEeCCcCcCCcCCcCCCCCCCCCCCCCceeeecCCCCCCeecCCCCCC-CcceeeeC
Confidence 346799999974 4688999999999999999999999877789999997643 56899999986 78899973
No 22
>cd03598 CLECT_EMBP_like C-type lectin-like domain (CTLD) of the type found in the human proteins, eosinophil major basic protein (EMBP) and prepro major basic protein homolog (MBPH). CLECT_EMBP_like: C-type lectin-like domain (CTLD) of the type found in the human proteins, eosinophil major basic protein (EMBP) and prepro major basic protein homolog (MBPH). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. Eosinophils and basophils carry out various functions in allergic, parasitic, and inflammatory diseases. EMBP is stored in eosinophil crystalloid granules and is released upon degranulation. EMBP is also expressed in basophils. The proform of EMBP is expressed in placental X cells and breast tissue and increases significantly during human pregnancy. EMBP has cytotoxic properties and damages bacteria and mammalian cells, in vitro, as well as, helminth parasites. EMBP deposition has been observed in the inflamed tissue of all
Probab=99.00 E-value=8.4e-10 Score=102.60 Aligned_cols=69 Identities=35% Similarity=0.649 Sum_probs=57.5
Q ss_pred cceEEEEeeeCCCCccccEEEecCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCccccccccccccccceeec
Q psy11954 203 TLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQH 275 (881)
Q Consensus 203 ~~~~WiGl~~~~~~~~~~w~W~dg~~~~~~~W~~~ep~~~~~~~~Cv~i~~~~~~~Wnd~~C~~~~~~~iC~~ 275 (881)
...+||||++.....++.|.|+||+++.|.+|++++|++ +.++||.|... .++|+|..|.. .+.|||+.
T Consensus 49 ~~~~WiGl~~~~~~~~~~~~W~dg~~~~y~~W~~g~p~~--~~~~Cv~~~~~-~g~W~~~~C~~-~~~fiC~~ 117 (117)
T cd03598 49 QAQVWIGGIITGKGRCRRFSWVDGSVWNYAYWAPGQPGN--RRGHCVELCTR-GGHWRRAHCKL-RRPFICSY 117 (117)
T ss_pred CCCEEEeeEcCCCCcCCeeEeCCCCccCcCCCCCCCCCC--CCCCcEEEeCC-CCeECCCcCCC-CceeeecC
Confidence 356999999842135789999999999999999999998 56899999764 46899999987 78899973
No 23
>PF00084 Sushi: Sushi domain (SCR repeat); InterPro: IPR000436 Sushi domains are also known as Complement control protein (CCP) modules, or short consensus repeats (SCR), exist in a wide variety of complement and adhesion proteins. The structure is known for this domain, it is based on a beta-sandwich arrangement; one face made up of three beta-strands hydrogen-bonded to form a triple-stranded region at its centre and the other face formed from two separate beta-strands []. CD21 (also called C3d receptor, CR2, Epstein Barr virus receptor or EBV-R) is the receptor for EBV and for C3d, C3dg and iC3b. Complement components may activate B cells through CD21. CD21 is part of a large signal-transduction complex that also involves CD19, CD81, and Leu13. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Complement decay-accelerating factor (Antigen CD55) belongs to the Cromer blood group system and is associated with Cr(a), Dr(a), Es(a), Tc(a/b/c), Wd(a), WES(a/b), IFC and UMC antigens. Complement receptor type 1 (C3b/C4b receptor) (Antigen CD35) belongs to the Knops blood group system and is associated with Kn(a/b), McC(a), Sl(a) and Yk(a) antigens. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; PDB: 1HFH_A 1HFI_A 1E5G_A 2UWN_A 2V8E_A 2XWB_H 3HS0_I 2OK5_A 2XWJ_J 3HRZ_D ....
Probab=98.99 E-value=4.4e-10 Score=89.47 Aligned_cols=56 Identities=39% Similarity=0.898 Sum_probs=50.7
Q ss_pred CCCCCCCCCceEEecCCCeecCcEEEEEcCCCceecCCceeeeccCCcccCCCCce
Q psy11954 665 CGNPETVPNGGFTLTSNATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTC 720 (881)
Q Consensus 665 C~~p~~~~nG~~~~~~~~~~~g~~v~y~C~~Gy~L~G~~~~~C~~~G~Ws~~~P~C 720 (881)
|+.|+.+.||.+......+.+|++|+|+|++||+|.|...++|+.+|+|++..|+|
T Consensus 1 C~~P~~~~~~~~~~~~~~~~~g~~~~~~C~~Gy~~~g~~~~~C~~~g~W~~~~p~C 56 (56)
T PF00084_consen 1 CPPPPPIPNGSISCTNNPYSYGSTVTFSCNPGYELSGSSTITCQSNGQWSPPPPTC 56 (56)
T ss_dssp EESESCBTTEEEESSSSSEETTEEEEEEESTTEEEESSSEEEEETTSEESSTTSEE
T ss_pred CcCCCCCCCcEEecCCCCccCCCEEEEcCCCCCEecCCCEEEECCCCEECCCCCCC
Confidence 66788899997776557788999999999999999999999999999999988887
No 24
>cd03588 CLECT_CSPGs C-type lectin-like domain (CTLD) of the type found in chondroitin sulfate proteoglycan core proteins. CLECT_CSPGs: C-type lectin-like domain (CTLD) of the type found in chondroitin sulfate proteoglycan core proteins (CSPGs) in human and chicken aggrecan, frog brevican, and zebra fish dermacan. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Xenopus brevican is expressed in the notochord and the brain during early embryogenesis. Zebra fish dermacan is expressed in dermal bones and may play a role in dermal bone development. CSPGs do contain LINK domain(s) which bind HA. These LINK domains are considered by one classif
Probab=98.99 E-value=6.5e-10 Score=104.52 Aligned_cols=69 Identities=29% Similarity=0.685 Sum_probs=58.5
Q ss_pred ceEEEEeeeCCCCccccEEEecCCCCCCCCCCCCCCCCC-CCCCCeEEEeCCCCccccccccccccccceeec
Q psy11954 204 LLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNY-NGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQH 275 (881)
Q Consensus 204 ~~~WiGl~~~~~~~~~~w~W~dg~~~~~~~W~~~ep~~~-~~~~~Cv~i~~~~~~~Wnd~~C~~~~~~~iC~~ 275 (881)
..+||||++. ..++.|.|+||+++.|.+|..+||++. .+.++||+|.....++|+|..|.. .+.|||+.
T Consensus 54 ~~~WIGl~~~--~~~~~~~W~dg~~~~~~~W~~~~p~~~~~~~~~Cv~~~~~~~~~W~d~~C~~-~~~fICe~ 123 (124)
T cd03588 54 DYQWIGLNDR--TIEGDFRWSDGHPLQFENWRPNQPDNFFATGEDCVVMIWHEEGEWNDVPCNY-HLPFTCKK 123 (124)
T ss_pred CcEEecceec--CCCCceEeCCCCcccccCcCCCCCCCCCCCCCCeEEEecCCCCeEcCCCCCC-CCeeeeeC
Confidence 4689999983 467889999999999999999999875 456899999765567899999996 68899974
No 25
>cd00033 CCP Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system. SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.
Probab=98.97 E-value=9.2e-10 Score=87.89 Aligned_cols=57 Identities=40% Similarity=0.801 Sum_probs=52.1
Q ss_pred CCCCCCCCCceEEecCCCeecCcEEEEEcCCCceecCCceeeeccCCcccCCCCcee
Q psy11954 665 CGNPETVPNGGFTLTSNATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTCK 721 (881)
Q Consensus 665 C~~p~~~~nG~~~~~~~~~~~g~~v~y~C~~Gy~L~G~~~~~C~~~G~Ws~~~P~C~ 721 (881)
|+.|+.+.||.+......+.+|+.|+|.|++||+|.|...++|+.+|+|++..|.|+
T Consensus 1 C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~Gy~~~g~~~~~C~~~g~W~~~~p~C~ 57 (57)
T cd00033 1 CPPPPVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTCE 57 (57)
T ss_pred CcCCCCCCCcEEecCCCcccCCCEEEEECCCCCeEeCCCeeEECCCCeECCCCcccC
Confidence 778888899999876567889999999999999999999999999999999888985
No 26
>cd03596 CLECT_tetranectin_like C-type lectin-like domain (CTLD) of the type found in the tetranectin (TN), cartilage derived C-type lectin (CLECSF1), and stem cell growth factor (SCGF). CLECT_tetranectin_like: C-type lectin-like domain (CTLD) of the type found in the tetranectin (TN), cartilage derived C-type lectin (CLECSF1), and stem cell growth factor (SCGF). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. TN binds to plasminogen and stimulates activation of plasminogen, playing a key role in the regulation of proteolytic processes. The TN CTLD binds two calcium ions. Its calcium free form binds to various kringle-like protein ligands. Two residues involved in the coordination of calcium are critical for the binding of TN to the fourth kringle (K4) domain of plasminogen (Plg K4). TN binds the kringle 1-4 form of angiostatin (AST K1-4). AST K1-4 is a fragment of Plg, commonly found in cancer tissues. TN inhibits the bin
Probab=98.97 E-value=8.9e-10 Score=104.40 Aligned_cols=69 Identities=25% Similarity=0.622 Sum_probs=58.0
Q ss_pred cceEEEEeeeCCCCccccEEEecCCCCCCCCCCC---CCCCCCCCCCCeEEEeCCCCccccccccccccccceeec
Q psy11954 203 TLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGK---DQPNNYNGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQH 275 (881)
Q Consensus 203 ~~~~WiGl~~~~~~~~~~w~W~dg~~~~~~~W~~---~ep~~~~~~~~Cv~i~~~~~~~Wnd~~C~~~~~~~iC~~ 275 (881)
...|||||++. ..++.|.|+||++++|.+|+. +||++ .+.++||+|.....++|+|..|.. .+.|||+.
T Consensus 58 ~~~~WiGl~~~--~~~~~w~w~dG~~~~~~~W~~~~~~~p~~-~~~~~Cv~l~~~~~~~W~d~~C~~-~~~fICe~ 129 (129)
T cd03596 58 NWEVWLGINDM--VAEGKWVDVNGSPISYFNWEREITAQPDG-GKRENCVALSSSAQGKWFDEDCRR-EKPYVCEF 129 (129)
T ss_pred CCcEEEecccc--CccCeEEeCCCCCccccccCCCCCCCCCC-CCCCCCEEEccCCCCcCcCccCCC-CCceeccC
Confidence 45799999984 468899999999999999997 89986 356899999765467899999986 78899974
No 27
>smart00032 CCP Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR). The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.
Probab=98.95 E-value=1.2e-09 Score=87.03 Aligned_cols=56 Identities=39% Similarity=0.817 Sum_probs=50.6
Q ss_pred CCCCCCCCCceEEecC-CCeecCcEEEEEcCCCceecCCceeeeccCCcccCCCCce
Q psy11954 665 CGNPETVPNGGFTLTS-NATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTC 720 (881)
Q Consensus 665 C~~p~~~~nG~~~~~~-~~~~~g~~v~y~C~~Gy~L~G~~~~~C~~~G~Ws~~~P~C 720 (881)
|+.|+.+.||.+.... ..+.+|++|+|.|++||.|.|...++|+.+|+|++..|.|
T Consensus 1 C~~p~~~~~g~~~~~~~~~~~~g~~~~~~C~~Gy~l~g~~~~~C~~~g~Ws~~~p~C 57 (57)
T smart00032 1 CPPPPDIENGTITSSNKGTYSVGDTVTYSCNPGYTLIGSSTITCLEDGTWSPPAPTC 57 (57)
T ss_pred CcCCCCCCCCEEecCCCCeecCCCEEEEEcCCCCEEcCCCeeEECCCCEECCCCCcC
Confidence 7788889999998754 5678999999999999999999999999999999988887
No 28
>cd03597 CLECT_attractin_like C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP). CLECT_attractin_like: C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. Mouse AtrN (the product of the mahogany gene) has been shown to bind Agouti protein and to function in agouti-induced pigmentation and obesity. Mutations in AtrN have also been shown to cause spongiform encephalopathy and hypomyelination in rats and hamsters. The cytoplasmic region of mouse ALP has been shown to binds to melanocortin receptor (MCR4). Signaling through MCR4 plays a role in appetite suppression. Attractin may have therapeutic potential in the treatment of obesity. Human attractin (hAtrN) has been shown to be expressed on activated T cells and released extracellularly. The
Probab=98.89 E-value=2.7e-09 Score=100.95 Aligned_cols=66 Identities=21% Similarity=0.387 Sum_probs=53.7
Q ss_pred ceEEEEeeeCCCCccccEEEecCCCC--CCCCCCCCCCCCCCCCCCeEEEeCCCCccccccccccccccceeec
Q psy11954 204 LLVWIGAQKDPGITARTWKWVDGEVV--TKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQH 275 (881)
Q Consensus 204 ~~~WiGl~~~~~~~~~~w~W~dg~~~--~~~~W~~~ep~~~~~~~~Cv~i~~~~~~~Wnd~~C~~~~~~~iC~~ 275 (881)
..+||||++. .++.|.|+||+++ +|++|.++||++ .++||+|..+...+|||..|......|||+.
T Consensus 62 ~~~WIGl~d~---~~g~w~W~Dgs~~~~~~~~W~~geP~~---~~~C~~~~~~~~~~w~d~~C~~~~~~~iCe~ 129 (129)
T cd03597 62 LTPWVGLRKI---NVSYWCWEDMSPFTNTTLQWLPGEPSD---AGFCGYLEEPAVSGLKANPCTNPVNGSVCER 129 (129)
T ss_pred CceEEeeecC---CCCceEECCCCCCCCccccCCCCCCCC---cccEEEEcccccCccccCCcCCCCcceeecC
Confidence 4689999984 2578999999987 467999999996 3799999766666799999986225889973
No 29
>cd03590 CLECT_DC-SIGN_like C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR). CLECT_DC-SIGN_like: C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR). This group also contains proteins similar to hepatic asialoglycoprotein receptor (ASGP-R) and langerin in human. These proteins are type II membrane proteins with a CTLD ectodomain. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. DC-SIGN is thought to mediate the initial contact between dendritic cells and resting T cells, and may also mediate the rolling of DCs on epithelium. DC-SIGN and DC-SIGNR bind to oligosaccharides present on human tissues, as well as, on path
Probab=98.81 E-value=8e-09 Score=97.27 Aligned_cols=69 Identities=39% Similarity=0.868 Sum_probs=58.1
Q ss_pred ccceEEEEeeeCCCCccccEEEecCCCC--CCCCCCCCCCCCCC-CCCCeEEEeCCCCccccccccccccccceee
Q psy11954 202 KTLLVWIGAQKDPGITARTWKWVDGEVV--TKPSWGKDQPNNYN-GEQNCVVLDGGRGWLWNDVGCKLDYLHWICQ 274 (881)
Q Consensus 202 ~~~~~WiGl~~~~~~~~~~w~W~dg~~~--~~~~W~~~ep~~~~-~~~~Cv~i~~~~~~~Wnd~~C~~~~~~~iC~ 274 (881)
....|||||++. ..++.|+|+||+++ .|.+|++++|++.. +.++||.|.... +.|.+..|.. .+.|||+
T Consensus 54 ~~~~~WiGl~~~--~~~~~~~W~dg~~~~~~~~~W~~~~p~~~~~~~~~C~~~~~~~-~~w~~~~C~~-~~~fiCe 125 (126)
T cd03590 54 GNRSYWIGLSDE--ETEGEWKWVDGTPLNSSKTFWHPGEPNNWGGGGEDCAELVYDS-GGWNDVPCNL-EYRWICE 125 (126)
T ss_pred CCCCEEEeeecC--CCcCCeEecCCCCCCCccCCcCCCcCCCCCCCCCCCEEEECCC-CcEeCcCCCC-CEeeeee
Confidence 345799999984 35789999999998 89999999998764 478999997654 6899999986 6789997
No 30
>cd03599 CLECT_DGCR2_like C-type lectin-like domain (CTLD) of the type found in DGCR2, an integral membrane protein deleted in DiGeorge Syndrome (DGS). CLECT_DGCR2_like: C-type lectin-like domain (CTLD) of the type found in DGCR2, an integral membrane protein deleted in DiGeorge Syndrome (DGS). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. DGS is also known velo-cardio-facial syndrome (VCFS). DGS is a genetic abnormality that results in malformations of the heart, face, and limbs and is associated with schizophrenia and depressive disorders. DGCR2 is a candidate for involvement in the pathogenesis of DGS since the DGCR2 gene lies within the minimal DGS critical region (MDGRC) of 22q11, which when deleted gives rise to DGS, and the DGCR2 gene is in close proximity to the balanced translocation breakpoint in a DGS patient having a balanced translocation.
Probab=98.77 E-value=9.9e-09 Score=98.99 Aligned_cols=69 Identities=16% Similarity=0.303 Sum_probs=52.9
Q ss_pred ceEEEEeeeC----CCCccccEEEec-CCCCCCC----CCCCCCCCCCCCCCCeEEEeC--------CCCcccccccccc
Q psy11954 204 LLVWIGAQKD----PGITARTWKWVD-GEVVTKP----SWGKDQPNNYNGEQNCVVLDG--------GRGWLWNDVGCKL 266 (881)
Q Consensus 204 ~~~WiGl~~~----~~~~~~~w~W~d-g~~~~~~----~W~~~ep~~~~~~~~Cv~i~~--------~~~~~Wnd~~C~~ 266 (881)
..+||||++. +...++.|+|+| |+++.|. +|.++|||+ ++|+||+|.. ....+|||..|..
T Consensus 68 ~~~WIGL~~~~~~~~~~~eg~w~WsddGs~~~y~~w~~~w~~gePn~--~~e~C~~~~~~~~~~~~~~~~~~W~d~~C~~ 145 (153)
T cd03599 68 CKFWVGYQYVITNRNHSLEGRWEVAYKGSMEVFLPPEPIFATGMSTN--DNVFCAQLQCFQIPSLRERGLHSWHAENCYE 145 (153)
T ss_pred CCEEEeecccccccCcccCCeEEEecCCccceecCccccCCCCCCCC--CCCCCeEEEeeccccccccccCeeeCccCCC
Confidence 4599999632 123688999995 9998865 557889987 5689999962 2345899999997
Q ss_pred ccccceeec
Q psy11954 267 DYLHWICQH 275 (881)
Q Consensus 267 ~~~~~iC~~ 275 (881)
.+.||||.
T Consensus 146 -~~~fiCq~ 153 (153)
T cd03599 146 -KSSFLCKR 153 (153)
T ss_pred -CCcceeCC
Confidence 68899974
No 31
>cd03594 CLECT_REG-1_like C-type lectin-like domain (CTLD) of the type found in Human REG-1 (lithostathine), REG-4, and avian eggshell-specific proteins: ansocalcin, structhiocalcin-1(SCA-1), and -2(SCA-2). CLECT_REG-1_like: C-type lectin-like domain (CTLD) of the type found in Human REG-1 (lithostathine), REG-4, and avian eggshell-specific proteins: ansocalcin, structhiocalcin-1(SCA-1), and -2(SCA-2). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. REG-1 is a proliferating factor which participates in various kinds of tissue regeneration including pancreatic beta-cell regeneration, regeneration of intestinal mucosa, regeneration of motor neurons, and perhaps in tissue regeneration of damaged heart. REG-1 may play a role on the pathophysiology of Alzheimer's disease and in the development of gastric cancers. Its expression is correlated with reduced survival from early-stage colorectal cancer. REG-1 also binds and aggregates
Probab=98.72 E-value=1.8e-08 Score=95.32 Aligned_cols=68 Identities=31% Similarity=0.725 Sum_probs=55.6
Q ss_pred cceEEEEeeeCCCCccccEEEecCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCC-ccccccccccccccceeec
Q psy11954 203 TLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRG-WLWNDVGCKLDYLHWICQH 275 (881)
Q Consensus 203 ~~~~WiGl~~~~~~~~~~w~W~dg~~~~~~~W~~~ep~~~~~~~~Cv~i~~~~~-~~Wnd~~C~~~~~~~iC~~ 275 (881)
...|||||++. ..++.|+|+||++++|.+|+.++|. .+.++||.|....+ +.|+|..|.. .+.|||+.
T Consensus 61 ~~~~WiGl~~~--~~~~~~~W~dg~~~~~~~W~~~~p~--~~~~~Cv~~~~~~~~~~W~~~~C~~-~~~fICe~ 129 (129)
T cd03594 61 YQPVWIGLHDP--QQSRGWEWSDGSKLDYRSWDRNPPY--ARGGYCAELSRSTGFLKWNDANCEE-RNPFICKY 129 (129)
T ss_pred CccEEEeeccC--CCCCceEeCCCCcceecccCCCCCC--CCCCCceEEEecCCCCeEECCCCCC-CceeeeeC
Confidence 45699999984 3467899999999999999999994 35689999975433 4799999996 78899973
No 32
>cd03600 CLECT_thrombomodulin_like C-type lectin-like domain (CTLD) of the type found in human thrombomodulin(TM), Endosialin, C14orf27, and C1qR. CLECT_thrombomodulin_like: C-type lectin-like domain (CTLD) of the type found in human thrombomodulin(TM), Endosialin, C14orf27, and C1qR. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. In these thrombomodulin-like proteins the residues involved in coordinating Ca2+ in the classical MBP-A CTLD are not conserved. TM exerts anti-fibrinolytic and anti-inflammatory activity. TM also regulates blood coagulation in the anticoagulant protein C pathway. In this pathway, the procoagulant properties of thrombin (T) are lost when it binds TM. TM also plays a key role in tumor biology. It is expressed on endothelial cells and on several type of tumor cell including squamous cell carcinoma. Loss of TM expression correlates with advanced stage and poor prognosis. Loss of function of TM func
Probab=98.71 E-value=2.3e-08 Score=96.25 Aligned_cols=72 Identities=26% Similarity=0.675 Sum_probs=55.2
Q ss_pred cceEEEEeeeCCC------CccccEEEecCC-CCCCCCCCCCCCCCCCCCCCeEEEeCCC----Cccccccccccccccc
Q psy11954 203 TLLVWIGAQKDPG------ITARTWKWVDGE-VVTKPSWGKDQPNNYNGEQNCVVLDGGR----GWLWNDVGCKLDYLHW 271 (881)
Q Consensus 203 ~~~~WiGl~~~~~------~~~~~w~W~dg~-~~~~~~W~~~ep~~~~~~~~Cv~i~~~~----~~~Wnd~~C~~~~~~~ 271 (881)
...|||||++... ..++.|.|+||. .++|++|+++ |++..+.++||+|.... .++|+|..|......|
T Consensus 57 ~~~~WIGl~~~~~~~~~~~~~~~~f~W~d~~~~~~y~~W~~~-p~n~~~~~~Cv~l~~~~~~~~~~~W~d~~C~~~~~~f 135 (141)
T cd03600 57 SLRLWIGLQREPRQCSDPSLPLRGFSWVTGDQDTDFSNWLQE-PAGTCTSPRCVALSAAGSTPDNLKWKDGPCSARADGY 135 (141)
T ss_pred CccEEEeEecCcccCccccccCCccEECCCCCCCCccccccC-CCCCCCCCccEEEEccCCCCCCCccccCCcCCCCCCe
Confidence 4579999997321 134689999975 5789999998 77765679999997643 5789999999633469
Q ss_pred eeec
Q psy11954 272 ICQH 275 (881)
Q Consensus 272 iC~~ 275 (881)
||+.
T Consensus 136 IC~~ 139 (141)
T cd03600 136 LCKF 139 (141)
T ss_pred EEee
Confidence 9985
No 33
>cd03602 CLECT_1 C-type lectin (CTL)/C-type lectin-like (CTLD) domain subgroup 1; a subgroup of protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. CLECT_1: C-type lectin (CTL)/C-type lectin-like (CTLD) domain subgroup 1; a subgroup of protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. Many CTLDs are calcium-dependent carbohydrate binding modules; other CTLDs bind protein ligands, lipids, and inorganic surfaces including CaCO3 and ice. Animal C-type lectins are involved in such functions as extracellular matrix organization, endocytosis, complement activation, pathogen recognition, and cell-cell interactions. CTLDs may bind a variety of carbohydrate ligands including mannose, N-acetylglucosamine, galactose, N-acetylgalactosamine, and fucose. CTLDs associate with each other through several different surfaces to form dimers, trimers, or tetramers from which ligand-binding sites project in differe
Probab=98.68 E-value=2.7e-08 Score=91.05 Aligned_cols=62 Identities=26% Similarity=0.670 Sum_probs=52.9
Q ss_pred cceEEEEeeeCCCCccccEEEecCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCccccccccccccccceee
Q psy11954 203 TLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQ 274 (881)
Q Consensus 203 ~~~~WiGl~~~~~~~~~~w~W~dg~~~~~~~W~~~ep~~~~~~~~Cv~i~~~~~~~Wnd~~C~~~~~~~iC~ 274 (881)
...|||||++. ++.|.|+||++++|.+|++++|++ +++||.|... ++|+|..|.. .+.|||+
T Consensus 46 ~~~~WiGl~~~----~~~~~W~dg~~~~~~~w~~~~~~~---~~~C~~~~~~--~~w~~~~C~~-~~~fIC~ 107 (108)
T cd03602 46 NSAAWIGLYRD----VDSWRWSDGSESSFRNWNTFQPFG---QGDCATMYSS--GRWYAALCSA-LKPFICY 107 (108)
T ss_pred CCcEEEEEECC----CCceEEcCCCCCccCccCCCCCCC---CCCeeEECcC--CeECcccCCC-CcCEecc
Confidence 45799999983 678999999999999999998753 5899999764 5799999986 7889996
No 34
>cd03595 CLECT_chondrolectin_like C-type lectin-like domain (CTLD) of the type found in the human type-1A transmembrane proteins chondrolectin (CHODL) and layilin. CLECT_chondrolectin_like: C-type lectin-like domain (CTLD) of the type found in the human type-1A transmembrane proteins chondrolectin (CHODL) and layilin. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. CHODL is predominantly expressed in muscle cells and is associated with T-cell maturation. Various alternatively spliced isoforms have been of CHODL have been identified. The transmembrane form of CHODL is localized in the ER-Golgi apparatus. Layilin is widely expressed in different cell types. The extracellular CTLD of layilin binds hyaluronan (HA), a major constituent of the extracellular matrix (ECM). The cytoplasmic tail of layilin binds various members of the band 4.1/ERM superfamily (talin, radixin, and merlin). The ERM proteins are cytoskeleton-membrane l
Probab=98.67 E-value=3.2e-08 Score=96.15 Aligned_cols=70 Identities=29% Similarity=0.657 Sum_probs=54.7
Q ss_pred cceEEEEeeeCCCC------ccccEEEecCCCCCCCCCCCCCCCCCCCCCCeEEEeCC----------CCcccccccccc
Q psy11954 203 TLLVWIGAQKDPGI------TARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGG----------RGWLWNDVGCKL 266 (881)
Q Consensus 203 ~~~~WiGl~~~~~~------~~~~w~W~dg~~~~~~~W~~~ep~~~~~~~~Cv~i~~~----------~~~~Wnd~~C~~ 266 (881)
...+||||++.... -++.|.|+||++++|.+|+++||++ +.++||.|... ..++|+|..|..
T Consensus 64 ~~~~WIGl~~~~~~~~~~~~~~~~~~W~dG~~~~y~~W~~~eP~~--~~~~Cv~l~~~~~~~~~~~~~~~~~W~d~~C~~ 141 (149)
T cd03595 64 DGDFWIGLRRSSQYNVTSSACSSLYYWLDGSISTFRNWYVDEPSC--GSEVCVVMYHQPSAPAGQGGPYLFQWNDDNCNM 141 (149)
T ss_pred CCcEEEEeECCCCccccccccCCccEEcCCCccCccCCCCCCCCC--cccCCEEEEecCCCCcCcCcccCCCccCCCCCC
Confidence 35699999974211 0356999999999999999999986 46899999632 124799999986
Q ss_pred ccccceeec
Q psy11954 267 DYLHWICQH 275 (881)
Q Consensus 267 ~~~~~iC~~ 275 (881)
.+.|||+.
T Consensus 142 -~~~fICe~ 149 (149)
T cd03595 142 -KNNFICKY 149 (149)
T ss_pred -CcccccCC
Confidence 78899973
No 35
>smart00231 FA58C Coagulation factor 5/8 C-terminal domain, discoidin domain. Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
Probab=98.51 E-value=9.3e-07 Score=84.85 Aligned_cols=124 Identities=22% Similarity=0.292 Sum_probs=68.9
Q ss_pred ceeccCCCCCCCCCCc-CCCCCCCcCCCceeccCCCCCCcEEEEcCCeEEEEEEEEEccCCCCCCCCcccEEEEccCCCC
Q psy11954 28 TNQSSTIRGAPSSNAN-DGELTTVHDGKRCTETQKEVSPWWQVDLLRPYPIRIVRITTRGCCGHQPLQDLEIRVGNSTDL 106 (881)
Q Consensus 28 a~qSS~~~~~~a~~Av-DG~~~~~~~~~~c~~t~~~~~pWw~VDLg~~~~i~~V~i~nr~d~~~~~~~~~~i~v~~~~~~ 106 (881)
.++||. ...|.+|. +++..+.| |.. ..+..+|++||||+.+.|..|.+.-|.. ..+....+.+ ++.+..
T Consensus 14 itasS~--~~~~~~~rL~~~~~~~W----~~~-~~~~~~wlqvDLg~~~~v~~i~~qg~~~-~~~~~~~~~~-~s~dg~- 83 (139)
T smart00231 14 ITASSS--YWAAKIARLNGGSDGAW----CPA-KNSLPPWIQVDLGRTRTVTGVITGGRHG-DGDGVTYKLL-YSDDGN- 83 (139)
T ss_pred EEEcCC--CCCCCccCcCcCCCCcc----cCC-CCCCCceeEeeccCcEEEEEEEecccCC-CCcEEEEEEE-EEeCCC-
Confidence 567775 33343331 12123455 332 2456899999999999999999975421 1122333333 433311
Q ss_pred CCCCCccCCCCCCCCCCCcccceeeccCCCCCCCceeeeccCccCCCceEEEeCCCCCcceEEEEEEecCccceEeeEEE
Q psy11954 107 QKNPLCAWFPGTLGHQPLQDLEIRVGNSTDLQKNPLCAWFPGTLEEGITKSFTCARTLVGQNVFIQLVGVEGSLSLCEVE 186 (881)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gRyV~i~~~g~~~~l~l~Eve 186 (881)
.|.++.+. . -..+.+...........+..++.+|||||...+-.....| +||
T Consensus 84 -------------~W~~~~~~------------~--~~~f~gn~d~~~~~~~~~~~~v~ARyvRi~p~~~~~~~~~-r~E 135 (139)
T smart00231 84 -------------NWTTYKDG------------N--SKVFPGNSDAGTVVVNEFPPPIVARYIRILPTGWNGNIIL-RVE 135 (139)
T ss_pred -------------CEeEEeCC------------C--eEEEeCccCCCceEEEecCCCEEEEEEEEEEeEcCCCcEE-EEE
Confidence 12222110 0 0123332223345556667778999999999865544444 899
Q ss_pred eec
Q psy11954 187 IFT 189 (881)
Q Consensus 187 V~g 189 (881)
|||
T Consensus 136 lyG 138 (139)
T smart00231 136 LLG 138 (139)
T ss_pred EEc
Confidence 997
No 36
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=98.48 E-value=1.5e-07 Score=121.75 Aligned_cols=68 Identities=22% Similarity=0.246 Sum_probs=56.1
Q ss_pred ceEEEEeeeCCCCcccc--EEEecCCCC-CCCCCCCCCCCCCCCCCCeEEEeCCCCccccccccccccccceeecCC
Q psy11954 204 LLVWIGAQKDPGITART--WKWVDGEVV-TKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQHNP 277 (881)
Q Consensus 204 ~~~WiGl~~~~~~~~~~--w~W~dg~~~-~~~~W~~~ep~~~~~~~~Cv~i~~~~~~~Wnd~~C~~~~~~~iC~~~~ 277 (881)
..+||||+|.. .++. |.|+||+++ .|+||.++||||.. +|+||+|... ++|||..|.. .+.|||+..+
T Consensus 378 ~~vWIGLsD~~--~EG~g~WvWsDGS~l~~YtnW~pGEPNn~~-~EdCV~l~~~--g~WND~~Cs~-~~~FICE~~~ 448 (2740)
T TIGR00864 378 RGVWIGFSDVN--GAEKGPAHQGEAFEAEECEEGLAGEPHPAR-AEHCVRLDPR--GQCNSDLCNA-PHAYVCELNP 448 (2740)
T ss_pred ccEEEeeeCCC--CCCceeeEECCCCcccCccCcCCCCCCCCC-CCCCEEEcCC--CCEEccCCCC-CeeEEeEECC
Confidence 45999999843 4554 999999998 69999999999854 5999999643 4699999997 7889999865
No 37
>cd03593 CLECT_NK_receptors_like C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs). CLECT_NK_receptors_like: C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs), including proteins similar to oxidized low density lipoprotein (OxLDL) receptor (LOX-1), CD94, CD69, NKG2-A and -D, osteoclast inhibitory lectin (OCIL), dendritic cell-associated C-type lectin-1 (dectin-1), human myeloid inhibitory C-type lectin-like receptor (MICL), mast cell-associated functional antigen (MAFA), killer cell lectin-like receptors: subfamily F, member 1 (KLRF1) and subfamily B, member 1 (KLRB1), and lys49 receptors. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. NKRs are variously associated with activation or inhibition of natural killer (NK) cells. Activating NKRs stimulate cytolysis by NK cells of virally infected or transformed cells; inhibitory NKRs block cytolysis up
Probab=98.35 E-value=7.6e-07 Score=82.44 Aligned_cols=63 Identities=24% Similarity=0.602 Sum_probs=52.1
Q ss_pred cceEEEEeeeCCCCccccEEEecCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCccccccccccccccceeec
Q psy11954 203 TLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQH 275 (881)
Q Consensus 203 ~~~~WiGl~~~~~~~~~~w~W~dg~~~~~~~W~~~ep~~~~~~~~Cv~i~~~~~~~Wnd~~C~~~~~~~iC~~ 275 (881)
...+||||++. ..++.|.|+||+++. +|...+|++ ..++||.|... .|+|..|.. .+.|||+.
T Consensus 54 ~~~~WiGl~~~--~~~~~~~W~dg~~~~--~~~~~~~~~--~~~~C~~~~~~---~w~~~~C~~-~~~~IC~k 116 (116)
T cd03593 54 SSSYWIGLSRE--KSEKPWKWIDGSPLN--NLFNIRGST--KSGNCAYLSST---GIYSEDCST-KKRWICEK 116 (116)
T ss_pred CCceEEEEeec--CCCCCeEccCCCccc--ccccccCCC--CCCCceEEcCC---cEEcccCCc-CceeeeeC
Confidence 45699999984 357899999999987 888888876 57899999765 599999986 78899973
No 38
>PHA02953 IEV and EEV membrane glycoprotein; Provisional
Probab=98.22 E-value=1.5e-06 Score=85.39 Aligned_cols=61 Identities=15% Similarity=0.322 Sum_probs=46.8
Q ss_pred ceEEEEeeeCCCCccccEEEecC-CCCCCC------CCCCCCCCCCCCCCCeEEEeCCCCccccccccccccccceeec
Q psy11954 204 LLVWIGAQKDPGITARTWKWVDG-EVVTKP------SWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQH 275 (881)
Q Consensus 204 ~~~WiGl~~~~~~~~~~w~W~dg-~~~~~~------~W~~~ep~~~~~~~~Cv~i~~~~~~~Wnd~~C~~~~~~~iC~~ 275 (881)
..+||||++ .++.|.|.|| +.+.|. +|+ ++|++ +.|+|+.+.. .+|+|..|.. .+.||||.
T Consensus 99 ~~~WIGL~d----~eg~W~w~Dggs~~~y~~~~~~~~w~-~~~~~--~~e~C~~~~~---~~W~d~~C~~-~~~fICqk 166 (170)
T PHA02953 99 KDFWVSLKK----KNNRWLDINTNKTVDMNKNTELKKIK-SKTKN--DNEACYIYKS---GELKETVCNS-VNYIICVK 166 (170)
T ss_pred CCEEEeEEC----CCCceEeCCCCeeecccccccccccc-CCCCC--CCCCceEEeC---CeEEeccCCC-CcEEEEEE
Confidence 358999997 3679999996 566654 476 55654 5789998864 3699999987 67899975
No 39
>smart00034 CLECT C-type lectin (CTL) or carbohydrate-recognition domain (CRD). Many of these domains function as calcium-dependent carbohydrate binding modules.
Probab=98.19 E-value=2.4e-06 Score=79.74 Aligned_cols=67 Identities=33% Similarity=0.777 Sum_probs=54.0
Q ss_pred cceEEEEeeeCCCCccccEEEecCCC-CCCCCCCCCCCCCCCCCCCeEEEeCCCCccccccccccccccceee
Q psy11954 203 TLLVWIGAQKDPGITARTWKWVDGEV-VTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQ 274 (881)
Q Consensus 203 ~~~~WiGl~~~~~~~~~~w~W~dg~~-~~~~~W~~~ep~~~~~~~~Cv~i~~~~~~~Wnd~~C~~~~~~~iC~ 274 (881)
...|||||++. ...+.|+|+||++ +.|.+|+++ ++ ....+.|+.|.....+.|.+..|.. .+.|||+
T Consensus 59 ~~~~WiG~~~~--~~~~~~~W~dg~~~~~~~~w~~~-~~-~~~~~~C~~~~~~~~~~w~~~~C~~-~~~~ICe 126 (126)
T smart00034 59 SDYYWIGLSDP--DSNGSWQWSDGSGPVNYSNWAPG-EP-NGGSGDCVVLSTSGGGKWNDVSCTS-KLPFVCE 126 (126)
T ss_pred CCCEEEecCcc--CcCCCeEECCCCCCCCccccCCC-CC-CCCCCCCEEEecCCCCcccCCCCCC-CcccccC
Confidence 46799999972 3478899999998 789999988 33 3457899999876546899999986 7788985
No 40
>PHA02642 C-type lectin-like protein; Provisional
Probab=97.94 E-value=1.5e-05 Score=80.18 Aligned_cols=62 Identities=19% Similarity=0.414 Sum_probs=50.1
Q ss_pred cceEEEEeeeCCCCccccEEEecCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCccccccccccccccceeecCC
Q psy11954 203 TLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQHNP 277 (881)
Q Consensus 203 ~~~~WiGl~~~~~~~~~~w~W~dg~~~~~~~W~~~ep~~~~~~~~Cv~i~~~~~~~Wnd~~C~~~~~~~iC~~~~ 277 (881)
...|||||++. ..++.|+|+||++++..+|..+ .++|+.+... .|.+..|.. .+.+||+...
T Consensus 141 ~~~yWIGLsd~--~~e~~W~WvDGS~~n~~~~i~G-------~g~CAyLs~~---~i~s~~C~~-~~~wIC~K~l 202 (216)
T PHA02642 141 SSDHWIGLNRE--SSNHPWKWADNSNYNASFVITG-------TGECAYLNDI---RISSSRVYA-NRKWICSKTY 202 (216)
T ss_pred CCeEEEEeEeC--CCCCceEECCCCccCcceeccC-------CCceEEEeCC---ceEccCcCC-CceEEeeeec
Confidence 45699999984 3588999999999998888643 4789999765 499999986 6789998743
No 41
>KOG4276|consensus
Probab=97.67 E-value=0.00033 Score=59.47 Aligned_cols=103 Identities=19% Similarity=0.249 Sum_probs=70.2
Q ss_pred ccCCCCCCcEEEEcCCeEEEEEEEEEccCCCCCCCCcccEEEEccCCCCCCCCCccCCCCCCCCCCCcccceeeccCCCC
Q psy11954 58 ETQKEVSPWWQVDLLRPYPIRIVRITTRGCCGHQPLQDLEIRVGNSTDLQKNPLCAWFPGTLGHQPLQDLEIRVGNSTDL 137 (881)
Q Consensus 58 ~t~~~~~pWw~VDLg~~~~i~~V~i~nr~d~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (881)
||+.+.+.||-||||.......-.+.-|.+-....+++-.++.+.+.. .|+|+.+++ |.
T Consensus 1 ht~d~k~awf~iDLG~~vip~~y~lrh~rgygRsalRnW~fQgS~Dgk-----------------tWt~l~vH~----DD 59 (113)
T KOG4276|consen 1 HTDDDKNAWFAIDLGLEVIPTAYTLRHARGYGRSALRNWKFQGSKDGK-----------------TWTDLRVHV----DD 59 (113)
T ss_pred CCCCCcceeEEEecCceEeeeeeeeeecccccHHHhhheeeeccccCC-----------------cceeEEEEe----cc
Confidence 567788999999999999999888888776666677787777766533 344555543 11
Q ss_pred CCCceeeeccCccCCCceEEEe--CCCC-CcceEEEEEEecCcc-----ceEeeEEEeecc
Q psy11954 138 QKNPLCAWFPGTLEEGITKSFT--CART-LVGQNVFIQLVGVEG-----SLSLCEVEIFTT 190 (881)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~gRyV~i~~~g~~~-----~l~l~EveV~g~ 190 (881)
. +-...|.+.++. ++.. ..=||+||++.|++. +|++.-+|+||.
T Consensus 60 ~---------sl~epGstAtWpi~~a~~~~~fRffRi~q~G~nasgqThylscsgfElYG~ 111 (113)
T KOG4276|consen 60 K---------SLCEPGSTATWPITAANDLLPFRFFRIVQNGKNASGQTHYLSCSGFELYGY 111 (113)
T ss_pred c---------cccCCCccccccccCcccccceEEEEEEecCCCCCCccceeEeeeEEEEEE
Confidence 1 112234444433 2211 234999999998653 789888999985
No 42
>cd00037 CLECT C-type lectin (CTL)/C-type lectin-like (CTLD) domain. CLECT: C-type lectin (CTL)/C-type lectin-like (CTLD) domain; protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. This group is chiefly comprised of eukaryotic CTLDs, but contains some, as yet functionally uncharacterized, bacterial CTLDs. Many CTLDs are calcium-dependent carbohydrate binding modules; other CTLDs bind protein ligands, lipids, and inorganic surfaces, including CaCO3 and ice. Animal C-type lectins are involved in such functions as extracellular matrix organization, endocytosis, complement activation, pathogen recognition, and cell-cell interactions. For example: mannose-binding lectin and lung surfactant proteins A and D bind carbohydrates on surfaces (e.g. pathogens, allergens, necrotic, and apoptotic cells) and mediate functions associated with killing and phagocytosis; P (platlet)-, E (endothelial)-, and L (leukocyte)- selectins (sels) mediate the initia
Probab=97.41 E-value=0.00026 Score=64.39 Aligned_cols=69 Identities=39% Similarity=0.850 Sum_probs=55.2
Q ss_pred ccceEEEEeeeCCCCccccEEEecCCC-CCCCCCCCCCCCCCCCCCCeEEEeCCCCccccccccccccccceee
Q psy11954 202 KTLLVWIGAQKDPGITARTWKWVDGEV-VTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQ 274 (881)
Q Consensus 202 ~~~~~WiGl~~~~~~~~~~w~W~dg~~-~~~~~W~~~ep~~~~~~~~Cv~i~~~~~~~Wnd~~C~~~~~~~iC~ 274 (881)
....+|||+++.. ....|.|+||+. ..+.+|..++|. ....++|+.+.......|++..|.. ...|+|+
T Consensus 46 ~~~~~wvg~~~~~--~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~C~~~~~~~~~~~~~~~C~~-~~~~iC~ 115 (116)
T cd00037 46 SSSDVWIGLNDLS--SEGTWKWSDGSPLVDYTNWAPGEPN-PGGSEDCVVLSSSSDGKWNDVSCSS-KLPFICE 115 (116)
T ss_pred CCCCEEEcccccC--cCCCeEecCCCccccccCCCCCCcC-CCCCCCeeEEccCCCCCccCCCCCC-Cceeeec
Confidence 4467999999842 467899999988 788999999883 3357899999775456899999985 6778986
No 43
>PF00059 Lectin_C: Lectin C-type domain; InterPro: IPR001304 Lectins occur in plants, animals, bacteria and viruses. Initially described for their carbohydrate-binding activity [], they are now recognised as a more diverse group of proteins, some of which are involved in protein-protein, protein-lipid or protein-nucleic acid interactions []. There are at least twelve structural families of lectins: C-type lectins, which are Ca+-dependent. S-type (galectins), a widespread family of glycan-binding proteins []. I-type, which have an immunoglobulin-like fold and can recognise sialic acids, other sugars and glycosaminoglycans []. P-type, which bind phosphomannosyl receptors []. Pentraxins []. (Trout) egg lectins. Calreticulin and calnexin, which act as molecular chaperones of the endoplasmic reticulum []. ERGIC-53 and VIP-36 []. Discoidins []. Eel aggutinins (fucolectins) []. Annexin lectins []. Fibrinogen-type lectins, which includes ficolins, tachylectins 5A and 5B, and Limax flavus (Spotted garden slug) agglutinin (these proteins have clear distinctions from one another, but they share a homologous fibrinogen-like domain used for carbohydrate binding). Also unclassified orphan lectins, including amphoterin, Cel-II, complement factor H, thrombospondin, sailic acid-binding lectins, adherence lectin, and cytokins (such as tumour necrosis factor and several interleukins). C-type lectins can be further divided into seven subgroups based on additional non-lectin domains and gene structure: (I) hyalectans, (II) asialoglycoprotein receptors, (III) collectins, (IV) selectins, (V) NK group transmembrane receptors, (VI) macrophage mannose receptors, and (VII) simple (single domain) lectins []. Therefore, lectins are a diverse group of proteins, both in terms of structure and activity. Carbohydrate binding ability may have evolved independently and sporadically in numerous unrelated families, where each evolved a structure that was conserved to fulfil some other activity and function. In general, animal lectins act as recognition molecules within the immune system, their functions involving defence against pathogens, cell trafficking, immune regulation and the prevention of autoimmunity [].; GO: 0005488 binding; PDB: 1T8D_A 2H2T_B 1T8C_A 2H2R_A 1TN3_A 1RJH_A 1HTN_A 3G8K_B 2E3X_B 1UMR_D ....
Probab=97.39 E-value=0.00017 Score=64.86 Aligned_cols=64 Identities=33% Similarity=0.732 Sum_probs=48.7
Q ss_pred ccceEEEEeeeCCCCccccEEEecCCCCC----CCCCCCCCCCCCCCCCCeEEEeCCCCccccccccccccccceee
Q psy11954 202 KTLLVWIGAQKDPGITARTWKWVDGEVVT----KPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQ 274 (881)
Q Consensus 202 ~~~~~WiGl~~~~~~~~~~w~W~dg~~~~----~~~W~~~ep~~~~~~~~Cv~i~~~~~~~Wnd~~C~~~~~~~iC~ 274 (881)
....+|||++. ...+.|.|+||.... +.+| .+ ....++|+.|.....++|.+.+|.. .+.|||+
T Consensus 37 ~~~~~Wig~~~---~~~~~~~w~~~~~~~~~~~~~~w---~~--~~~~~~C~~~~~~~~~~w~~~~C~~-~~~fiCe 104 (105)
T PF00059_consen 37 SNESYWIGLDS---DNNGTWKWIDGSPNSPENFYTNW---NP--PNDSENCAYIYYSSSGKWNDVPCSE-KYPFICE 104 (105)
T ss_dssp SSSEEEEEEES---SSTSEEEETTSSBSSSTTBSGCB---SS--GGSSEEEEEEGCSTTTEEEEEETTS-EEEEEEE
T ss_pred ccceeeeeeec---cccceeccccCCCcccccccccc---cc--CCCCCCeEEEEEcCCCeEEeeCCCC-CeeEEee
Confidence 56779999932 357789999998765 4678 12 2246899999555667899999997 7889997
No 44
>PHA03097 C-type lectin-like protein; Provisional
Probab=97.12 E-value=0.00068 Score=66.06 Aligned_cols=57 Identities=25% Similarity=0.375 Sum_probs=41.5
Q ss_pred cceEEEEeeeCCCCccccEEEecCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCccccccccccccccceeecC
Q psy11954 203 TLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQHN 276 (881)
Q Consensus 203 ~~~~WiGl~~~~~~~~~~w~W~dg~~~~~~~W~~~ep~~~~~~~~Cv~i~~~~~~~Wnd~~C~~~~~~~iC~~~ 276 (881)
...|||||++.. . |+||+.+. .+|.+ + .++++||.|... .|+|..|.. .+.|||+..
T Consensus 99 ~~~~WIGL~d~~-----~--W~dgs~~~-~~~~~--~---~~~e~Cv~i~~~---~w~d~~C~~-~~~~ICek~ 155 (157)
T PHA03097 99 GQDLWIGIEKKK-----G--DDDDREVL-DKVVK--P---PKSGKCAYLKDK---TIISSNCNA-TKGWICFDR 155 (157)
T ss_pred CCCEEEeeecCC-----C--ccCCCccc-ccccC--C---CCCCCEEEEECC---cEEeCCCCC-CeeEEEeec
Confidence 456999999842 1 99998653 34532 2 246899999764 499999996 678999863
No 45
>PF07738 Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: IPR012919 The Caenorhabditis elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development. The S. pombe Sad1 protein localises at the spindle pole body. UNC-84 and Sad1 share a common C-terminal region that is often termed the SUN (Sad1 and UNC) domain [, ]. In mammals, the SUN domain is present in two proteins, Sun1 and Sun2 []. The SUN domain of Sun2 has been demonstrated to be in the periplasm []. ; PDB: 4DXT_A 3UNP_A 4DXR_A 4DXS_A.
Probab=95.39 E-value=0.098 Score=49.73 Aligned_cols=121 Identities=15% Similarity=0.141 Sum_probs=64.9
Q ss_pred CCCCCcCCCCCCCcCCCceeccCCCCCCcEEEEcCCeEEEEEEEEEccCC-C--CCCCCcccEEEEccCCCCCCCCCccC
Q psy11954 38 PSSNANDGELTTVHDGKRCTETQKEVSPWWQVDLLRPYPIRIVRITTRGC-C--GHQPLQDLEIRVGNSTDLQKNPLCAW 114 (881)
Q Consensus 38 ~a~~AvDG~~~~~~~~~~c~~t~~~~~pWw~VDLg~~~~i~~V~i~nr~d-~--~~~~~~~~~i~v~~~~~~~~~~~~~~ 114 (881)
.|+.+++.+.+. ...+.|-... ....|+.|.|.+...|+.|.|.+-.- - -....+.|+|....+...
T Consensus 7 ~p~~il~~~~~~-~~~g~Cw~~~-g~~~~~~I~L~~~I~v~~v~i~h~~~~~~~~sSapk~f~V~g~~~~~~-------- 76 (135)
T PF07738_consen 7 PPSNILSPDKDS-YMPGPCWAFE-GSKGWLTIELSEPIYVTSVTIEHVEKSIAPFSSAPKDFEVWGSVDYPD-------- 76 (135)
T ss_dssp -GGGGGSS------STT-SEEEE-TT-EEEEEEEEEEEEEEEEEEE---GGGSG-TTSB-EEEEEEESSSST--------
T ss_pred ChhheECCCCCc-ccCCccCccC-CCceEEEEEcCCcEEEEEEEEEEeccccCCcCCCCcEEEEEEEecccc--------
Confidence 466677777543 3355675443 46789999999999999999985421 0 224555677765544221
Q ss_pred CCCCCCCCCCcccceeeccCCCCCCCceeeeccCccCCCceEEEeCCCCC--cceEEEEEEe---cCccceEeeEEEeec
Q psy11954 115 FPGTLGHQPLQDLEIRVGNSTDLQKNPLCAWFPGTLEEGITKSFTCARTL--VGQNVFIQLV---GVEGSLSLCEVEIFT 189 (881)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~gRyV~i~~~---g~~~~l~l~EveV~g 189 (881)
..+...+.+..........+|..+... .-|||+|++. |...+..|..|+|||
T Consensus 77 -----------------------~~~~~LG~f~y~~~~~~~QtF~l~~~~~~~~~~i~l~i~sN~G~~~ytclyr~rVhG 133 (135)
T PF07738_consen 77 -----------------------EEWVLLGEFEYDSDGNSIQTFPLPRPPRQPVRYIKLRILSNHGNEEYTCLYRFRVHG 133 (135)
T ss_dssp -----------------------S--EEEEEEE--TTS-SEEEEE-SS--S--EEEEEEEE--BSS-SSEEEE-EEEEEE
T ss_pred -----------------------cceeeeceEEEcCCcCccEeeeeccCchhcCcEEEEEEEcCCCCCceEEEEEEEEEe
Confidence 113334444432333445677776443 5799999998 555588999999999
Q ss_pred cc
Q psy11954 190 TD 191 (881)
Q Consensus 190 ~~ 191 (881)
.+
T Consensus 134 ~~ 135 (135)
T PF07738_consen 134 ES 135 (135)
T ss_dssp E-
T ss_pred eC
Confidence 73
No 46
>cd08366 APC10 APC10 subunit of the anaphase-promoting complex (APC) that mediates substrate ubiquitination. This model represents the single domain protein APC10, a subunit of the anaphase-promoting complex (APC), which is a multi-subunit E3 ubiquitin ligase. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a vital component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC (also known as the cyclosome), is a cell cycle-regulated E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. In mitosis, the APC initiates sister chromatid separation by ubiquitinating the anaphase inhibitor securin and triggers exit from mitosis by ubiquitinating cyclin B. The C-terminus of APC10 binds to CDC27/APC3, an APC subunit that contains multiple tetratrico peptide repeats. APC10 domains are homologous to the DOC1 domains present in the
Probab=93.51 E-value=0.74 Score=43.74 Aligned_cols=69 Identities=17% Similarity=0.142 Sum_probs=52.8
Q ss_pred eeccCCCCCCCCCCcCCCCCCCcCCCceeccCCCCCCcEEEEcCCeEEEEEEEEEcc--CCCCCCCCcccEEEEccCC
Q psy11954 29 NQSSTIRGAPSSNANDGELTTVHDGKRCTETQKEVSPWWQVDLLRPYPIRIVRITTR--GCCGHQPLQDLEIRVGNST 104 (881)
Q Consensus 29 ~qSS~~~~~~a~~AvDG~~~~~~~~~~c~~t~~~~~pWw~VDLg~~~~i~~V~i~nr--~d~~~~~~~~~~i~v~~~~ 104 (881)
+.||...+++.....||+.++.|++. ..-.-|..+.+.+...|.+|.|+-- .| ..-.=..+.|++|++.
T Consensus 10 ~vSS~k~g~gv~~L~D~~~~TyWQSD------g~qPH~I~i~f~k~~~i~~l~i~vd~~~D-eSYtP~~I~v~~G~~~ 80 (139)
T cd08366 10 SLSSAKPGNGVDQLRDDSLDTYWQSD------GPQPHLINIQFSKKTDISAVALYLDYKLD-ESYTPSKISIRAGTSP 80 (139)
T ss_pred EEEeCCCCCCHHHhcCCCCCccCCCC------CCCCEEEEEEecCCcEEEEEEEEEccCCC-CCCCCEEEEEEEECCc
Confidence 46777777889999999999999863 3358899999999999999999843 23 1112346778888884
No 47
>cd08159 APC10-like APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination. This family contains the single domain protein, APC10, a subunit of the anaphase-promoting complex (APC), as well as the DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC, a multi-protein complex (or cyclosome), is a cell cycle-regulated, E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. APC10-like DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included in this hierarchy. CUL7 is a member of the Cullin-RING ligase family and f
Probab=91.79 E-value=2.1 Score=40.03 Aligned_cols=61 Identities=20% Similarity=0.231 Sum_probs=44.4
Q ss_pred CCCCCcCCCCCCCcCCCceeccCCCCCCcEEEEcCCeEEEEEEEEEcc-CCCCCCCCcccEEEEccCC
Q psy11954 38 PSSNANDGELTTVHDGKRCTETQKEVSPWWQVDLLRPYPIRIVRITTR-GCCGHQPLQDLEIRVGNST 104 (881)
Q Consensus 38 ~a~~AvDG~~~~~~~~~~c~~t~~~~~pWw~VDLg~~~~i~~V~i~nr-~d~~~~~~~~~~i~v~~~~ 104 (881)
++..+.||+.++.|++. +.+..-|..+-+.....|.++.|+-- .| ..-.=..+.|++|++.
T Consensus 15 gv~~L~D~~~~tyWQSd-----G~qphh~i~l~f~k~v~i~~l~i~~~~~D-eSYtP~~I~V~~G~~~ 76 (129)
T cd08159 15 PVSRLTDGNYDTYWQSD-----GSQGSHWIRLFMKKDVLIRVLAIFVDMAD-SSYMPSLVVVYGGHSP 76 (129)
T ss_pred cHHHhcCCCCCccCCCC-----CCCCCEEEEEEEcCCcEEEEEEEEecCCC-CCcCCcEEEEEecCCH
Confidence 77899999999999864 23344599999999999999999853 22 1112235677788773
No 48
>cd08667 APC10-ZZEF1 APC10/DOC1-like domain of uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) and homologs. This model represents the APC10/DOC1-like domain present in the uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) of Mus musculus. Members of this family contain EF-hand, APC10, CUB, and zinc finger ZZ-type domains. ZZEF1-like APC10 domains are homologous to the APC10 subunit/DOC1 domains present in E3 ubiquitin ligases, which mediate substrate ubiquitination (or ubiquitylation), and are components of the ubiquitin-26S proteasome pathway for selective proteolytic degradation.
Probab=91.13 E-value=2.8 Score=39.31 Aligned_cols=62 Identities=19% Similarity=0.247 Sum_probs=45.6
Q ss_pred CCCCCcCCCCCCCcCCCceeccCCCCCCcEEEEcCCeEEEEEEEEEcc-CCCCCCCCcccEEEEccCCC
Q psy11954 38 PSSNANDGELTTVHDGKRCTETQKEVSPWWQVDLLRPYPIRIVRITTR-GCCGHQPLQDLEIRVGNSTD 105 (881)
Q Consensus 38 ~a~~AvDG~~~~~~~~~~c~~t~~~~~pWw~VDLg~~~~i~~V~i~nr-~d~~~~~~~~~~i~v~~~~~ 105 (881)
++..+.||+.++.|++. +.+-.-|.++-+..-..|..|.|+-- .|- .-.=..+.|++|++..
T Consensus 15 gv~~L~D~~~~TYWQSD-----G~q~pH~I~i~f~~~v~i~~l~i~v~~~De-SYtPs~I~I~~G~~~~ 77 (131)
T cd08667 15 DIDRMTDGETSTYWQSD-----GSARSHWIRLKMKPDVVLRHLSIAVAATDQ-SYMPQQVTVSVGRSAS 77 (131)
T ss_pred hhHHhhcCCCCccCccC-----CCCCCeEEEEEecCCeEEEEEEEEEcCCCC-CcCCcEEEEEecCCHh
Confidence 68899999999999764 22346699999999999999999963 231 1122356788887743
No 49
>PF14704 DERM: Dermatopontin
Probab=89.90 E-value=1.1 Score=43.48 Aligned_cols=127 Identities=10% Similarity=0.249 Sum_probs=81.4
Q ss_pred cCCcEEEEEeCCCcEEeCcceEEec--CCCcccCCCCcccccccCCCCC---cCCCeEEcCCCCCCCeEEEEcCCCceee
Q psy11954 386 THGAVAIYACHENYTLIGETRRVCG--DGGKWNGTEPQCLFDWCAEPPQ---ISGGIVTTSGRRTGSVATYSCEPGFILF 460 (881)
Q Consensus 386 ~~g~~~~~~C~~Gy~l~G~~~~~C~--~~G~Ws~~~P~C~~~~C~~p~~---~~ng~~~~~~~~~gs~~~y~C~~Gy~l~ 460 (881)
.+++...|+|..|..|.+-.+.... +|..|.= .|.. .+. .........-..++....|+|..|+.|.
T Consensus 2 ~~d~~f~f~Cp~gq~i~~v~S~~~n~~eDR~W~F---~C~~-----~~~~~~~~~~~~~~~vN~~d~~~~~tCp~n~~i~ 73 (152)
T PF14704_consen 2 NYDQPFSFQCPSGQGISGVRSYHSNNREDRRWSF---GCSP-----VGSGPTQGSSCWWSYVNNYDQPFNFTCPSNYYIT 73 (152)
T ss_pred CCCCCEEEECCCCCEEEEEEEEeCCCCCcccEEE---EEEe-----CCCCCCccceEcchhhhccCCcEEEECCCCCEEE
Confidence 3567789999999999988887776 5778882 4543 222 1111111122367889999999999999
Q ss_pred Ccee-----------eecCCCCCCCCCCceeec---cCceecCcEEEEEcCCCcEEcCCCce--eeccCCcccCCccccc
Q psy11954 461 GSNV-----------NIDCGRLTAIPYGSISYL---NETTYLGSEVLYSCSRNYRLVGHPRR--SCLESKVWSDTAPKCE 524 (881)
Q Consensus 461 g~~~-----------~i~C~~p~~~~nG~~~~~---~~~~~~gs~v~y~C~~Gy~L~G~~~~--tC~~~G~Ws~~~P~C~ 524 (881)
|-.. .+.|-......- ..+. .-...++..+.|.-..||.|.|-.+. .-.+|.+|. .-.|.
T Consensus 74 G~~S~h~n~~eDR~w~f~C~~~~~~~~--~~C~~~t~~~N~~d~~~~~~~~~~~~i~G~~S~~~~~~~DR~wk--~~~C~ 149 (152)
T PF14704_consen 74 GMQSYHDNSKEDRRWQFQCCRINGATL--YNCYWTTGYVNNYDGPLDFTVPSGYVITGVSSYHDNSNEDRRWK--FRTCR 149 (152)
T ss_pred EEEEEecCCcccCceEEEEEecCCcee--ecceecccccccCCCcEEEEcCCCcEEEeEeeecCCCCcCceEE--EEEEe
Confidence 8665 556654332211 1111 11234678889998999999995532 345688887 34565
No 50
>KOG3516|consensus
Probab=89.12 E-value=0.56 Score=57.61 Aligned_cols=129 Identities=11% Similarity=0.037 Sum_probs=68.7
Q ss_pred CceeccCCC--CCCCCCCcCCCCCCCcCCCceeccCCCCCCcEEEEcCCeEEEEEEEEEccCCCCCCCCcccEEEEccCC
Q psy11954 27 PTNQSSTIR--GAPSSNANDGELTTVHDGKRCTETQKEVSPWWQVDLLRPYPIRIVRITTRGCCGHQPLQDLEIRVGNST 104 (881)
Q Consensus 27 ~a~qSS~~~--~~~a~~AvDG~~~~~~~~~~c~~t~~~~~pWw~VDLg~~~~i~~V~i~nr~d~~~~~~~~~~i~v~~~~ 104 (881)
-+.+||.+- ...+.++-+..++ .|.. --...++|.++||++.+.|..|..-.|.. .++-++-+.+.-+|..
T Consensus 41 v~f~ssS~is~s~gp~~~~~~G~~-gwsp-----~~~~~~~wlq~dLg~~~ev~aVatqg~~~-Sddwvt~y~l~~sD~g 113 (1306)
T KOG3516|consen 41 VAFLSSSAISQSHGPKLNRRVGIS-GWSP-----KISNYNQWLQLDLGKRMEVTAVATQGRYG-SDDWVTSYILQYSDPG 113 (1306)
T ss_pred HHhhhhhhhhhcccchhhhhcCcc-cccc-----ccCcccceeeeccCCceeeEEEeeccccC-cchHHHHHHHhccCCc
Confidence 344555432 2455555554444 3432 24578999999999999999999987631 1123333333334432
Q ss_pred CCCCCCCccCCCCCCCCCCCcccceeeccCCCCCCCceeeeccCccCCCceEEEeCCCCCcceEEEEEEecCcc-ceEee
Q psy11954 105 DLQKNPLCAWFPGTLGHQPLQDLEIRVGNSTDLQKNPLCAWFPGTLEEGITKSFTCARTLVGQNVFIQLVGVEG-SLSLC 183 (881)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gRyV~i~~~g~~~-~l~l~ 183 (881)
+. |.++. ..... +.+.+......+..-...+++.||||||+...-.. ...=-
T Consensus 114 ~~--------------w~~y~---------~~~~~----wtf~Gn~n~~sVv~~~l~~~~~ar~vr~~pl~wnp~grig~ 166 (1306)
T KOG3516|consen 114 RN--------------WKTYS---------QEGSS----WTFVGNVNADSVVYHELEPPIEARFVRILPLDWNPKGRIGM 166 (1306)
T ss_pred cc--------------eEEEE---------eCCCc----cccccccccceEEeccccCcccceEEeeeeeeeCCCCccee
Confidence 21 11110 00000 11222222333444445578999999999873221 23334
Q ss_pred EEEeec
Q psy11954 184 EVEIFT 189 (881)
Q Consensus 184 EveV~g 189 (881)
.|||||
T Consensus 167 rVevyg 172 (1306)
T KOG3516|consen 167 RVEVYG 172 (1306)
T ss_pred EEEEEe
Confidence 688988
No 51
>PHA02867 C-type lectin protein; Provisional
Probab=88.77 E-value=0.42 Score=46.71 Aligned_cols=54 Identities=13% Similarity=0.228 Sum_probs=37.4
Q ss_pred ceEEEEeeeCCCCccccEEEecCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCccccccccccccccceeecC
Q psy11954 204 LLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCKLDYLHWICQHN 276 (881)
Q Consensus 204 ~~~WiGl~~~~~~~~~~w~W~dg~~~~~~~W~~~ep~~~~~~~~Cv~i~~~~~~~Wnd~~C~~~~~~~iC~~~ 276 (881)
..|||||++.. .|.|.+++.+ - ...++++|+.+..+ ...++.|+. ...+||+..
T Consensus 102 ~~~WIGLs~~~-----~~~~~~~s~~-----~-----~~~~~~~Ca~i~~~---~i~s~~C~~-~~~wIC~K~ 155 (167)
T PHA02867 102 GSYWIDINQNR-----KIPGINFSLY-----Y-----EQGVNDICLLFDTS---NIIEMSCIF-HERTICVKE 155 (167)
T ss_pred CCEEEEEEeCC-----CCCCccCcee-----e-----ecCCCCcEEEEeCC---eEEeecccC-CcEEEEEcc
Confidence 36999999842 3556555432 1 12256799999765 489999986 678999863
No 52
>smart00136 LamNT Laminin N-terminal domain (domain VI). N-terminal domain of laminins and laminin-related protein such as Unc-6/ netrins.
Probab=87.28 E-value=11 Score=39.48 Aligned_cols=64 Identities=20% Similarity=0.233 Sum_probs=42.3
Q ss_pred ccccCCCCceeccCCCC------------------------------CCCCCCcCCCC---CCCcCCCceeccCCCCCCc
Q psy11954 20 TNVALRRPTNQSSTIRG------------------------------APSSNANDGEL---TTVHDGKRCTETQKEVSPW 66 (881)
Q Consensus 20 ~nlA~~k~a~qSS~~~~------------------------------~~a~~AvDG~~---~~~~~~~~c~~t~~~~~pW 66 (881)
.|||+|++..+|||=.. ..+++++|++. .+-|++..-. +...+==
T Consensus 12 ~nla~g~~v~assTCG~~~pe~yC~~~~~~~~~~~C~~CDa~~p~~~Hp~~~l~D~~~~~~~TwWQS~~~~--~~~~~Vt 89 (238)
T smart00136 12 VNLAFGREVTATSTCGEPGPERYCKLVGHTEQGKKCDYCDARNPRRSHPAENLTDGNNPNNPTWWQSEPLS--NGPQNVN 89 (238)
T ss_pred hhhhcCCeeeEecCCCCCCCcceeEeccccCcCCcCCCCCCCCccccCCHHHhhccCCCCCCceecCCCcC--CCCccEE
Confidence 89999999999998221 11445677765 2445543211 1112344
Q ss_pred EEEEcCCeEEEEEEEEEcc
Q psy11954 67 WQVDLLRPYPIRIVRITTR 85 (881)
Q Consensus 67 w~VDLg~~~~i~~V~i~nr 85 (881)
+.+||++.|.|.-|.|.-.
T Consensus 90 itLdL~k~fevtyi~l~F~ 108 (238)
T smart00136 90 LTLDLGKEFHVTYVILKFC 108 (238)
T ss_pred EEEecCCEEEEEEEEEEec
Confidence 6789999999999999864
No 53
>PF00055 Laminin_N: Laminin N-terminal (Domain VI); InterPro: IPR008211 Laminin is a large molecular weight glycoprotein present only in basement membranes in almost every animal tissue. Laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components []. Each laminin is a heterotrimer assembled from alpha, beta and gamma chain subunits, secreted and incorporated into cell-associated extracellular matrices []. Basement membrane assembly is a cooperative process in which laminins polymerise through their N-terminal domain (LN or domain VI) and anchor to the cell surface through their G domains. Netrins may also associate with this network through heterotypic LN domain interactions []. This leads to cell signalling through integrins and dystroglycan (and possibly other receptors) recruited to the adherent laminin. This LN domain dependent self-assembly is considered to be crucial for the integrity of basement membranes, as highlighted by genetic forms of muscular dystrophy containing the deletion of the LN module from the alpha 2 laminin chain []. The laminin N-terminal domain is found in all laminin and netrin subunits except laminin alpha 3A, alpha 4 and gamma 2. ; PDB: 3TBD_A 3ZYG_B 3ZYI_B 3ZYJ_D 2Y38_A.
Probab=86.00 E-value=0.6 Score=48.76 Aligned_cols=64 Identities=20% Similarity=0.167 Sum_probs=39.8
Q ss_pred ccccCCCCceeccCC--C------------------------------CCCCCCCcCCCC---CCCcCCCceeccCCC--
Q psy11954 20 TNVALRRPTNQSSTI--R------------------------------GAPSSNANDGEL---TTVHDGKRCTETQKE-- 62 (881)
Q Consensus 20 ~nlA~~k~a~qSS~~--~------------------------------~~~a~~AvDG~~---~~~~~~~~c~~t~~~-- 62 (881)
.|||+|+++.+|||= . ...+++++|++. .+-|++.. .++..
T Consensus 6 ~nla~gr~v~assTCG~~~pe~yC~~~~~~~~~~~C~~Cda~~~~~~~~Hp~~~~~D~~~~~~~TwWQS~~--~~~g~~~ 83 (237)
T PF00055_consen 6 GNLAFGREVTASSTCGEPGPERYCRLSGSQGRQRQCFICDASDPDPRRSHPPSYLTDSHNPNNSTWWQSET--LQNGVQY 83 (237)
T ss_dssp EETTTT-EEECCCBS-SS--EEE--SSSTTT---E-EEE-TTSTSTTT---GGGGCSSSCTTB---EEB----STTTTST
T ss_pred chhhcCCEeEEEcCCCCCCCccceeccCccccCcccccCCCcccccccccChhhcccccccccCceecCCc--cCCCCcC
Confidence 799999999999881 1 112556788877 34555431 11222
Q ss_pred CCCcEEEEcCCeEEEEEEEEEcc
Q psy11954 63 VSPWWQVDLLRPYPIRIVRITTR 85 (881)
Q Consensus 63 ~~pWw~VDLg~~~~i~~V~i~nr 85 (881)
.+==+++||++.|.|..|.|.-+
T Consensus 84 ~~VtitLdL~~~f~v~~v~l~F~ 106 (237)
T PF00055_consen 84 ENVTITLDLGKEFEVTYVILQFC 106 (237)
T ss_dssp T-EEEEEEEEEEEEEEEEEEEES
T ss_pred cceEEEEcccceEEEEEEEEEEc
Confidence 23347999999999999999865
No 54
>KOG1094|consensus
Probab=81.79 E-value=7.4 Score=45.10 Aligned_cols=103 Identities=18% Similarity=0.140 Sum_probs=58.6
Q ss_pred CCCCCcEEEEcCCeEEEEEEEEEccCCC--CCCCCcccEEEEccCCCCCCCCCccCCCCCCCCCCCcccceeeccCCCCC
Q psy11954 61 KEVSPWWQVDLLRPYPIRIVRITTRGCC--GHQPLQDLEIRVGNSTDLQKNPLCAWFPGTLGHQPLQDLEIRVGNSTDLQ 138 (881)
Q Consensus 61 ~~~~pWw~VDLg~~~~i~~V~i~nr~d~--~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (881)
.....|+||||...+-|..|.--.|-+- ..|-...++|+-.-. ++-|-.+.|+.=.+ .-+++
T Consensus 75 ~~~~E~LQvdl~~~hlit~V~TQGR~~~G~G~Efa~~y~I~Y~Rp--------------g~~Wi~wk~r~g~e--vi~gN 138 (807)
T KOG1094|consen 75 SKSKEYLQVDLQRLHLITSVETQGRHAGGLGKEFARAYKIRYSRP--------------GLRWISWKDRWGQE--VIPGN 138 (807)
T ss_pred ccchhheEEeeeceEEEEEeeeccccCCCccceehhheeeeeccC--------------cchheeeccccCce--ecCCC
Confidence 3468899999999999999999988422 225555666654322 11222222221110 01222
Q ss_pred CCceeeeccCccCCCceEEEeCCCCCcceEEEEEEecCccceEee-EEEeeccc
Q psy11954 139 KNPLCAWFPGTLEEGITKSFTCARTLVGQNVFIQLVGVEGSLSLC-EVEIFTTD 191 (881)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gRyV~i~~~g~~~~l~l~-EveV~g~~ 191 (881)
.++ .....-...+++.+|.||+.-.... ..++| -||+||=.
T Consensus 139 ~dt-----------~~~v~r~L~ppivAr~vRf~P~s~~-~rtVCmRvEi~GC~ 180 (807)
T KOG1094|consen 139 EDT-----------EGVVLRDLDPPIVARRVRFVPVSDR-TRTVCMRVELYGCL 180 (807)
T ss_pred CCc-----------chhhhhhcCchhhheeEEEEeccCC-cceEEEEEEEeccc
Confidence 222 1111122347899999999865433 44444 68999854
No 55
>KOG4350|consensus
Probab=80.31 E-value=2.6 Score=45.91 Aligned_cols=85 Identities=21% Similarity=0.295 Sum_probs=58.6
Q ss_pred cccCc----ccccccCCCCceeccCCCCCCCCCCcCCCCCCCc-CCCceec-cCCCCCCcEEEEcCCeEEEEEEEEE--c
Q psy11954 13 SIHFI----SGTNVALRRPTNQSSTIRGAPSSNANDGELTTVH-DGKRCTE-TQKEVSPWWQVDLLRPYPIRIVRIT--T 84 (881)
Q Consensus 13 ~~~~~----~~~nlA~~k~a~qSS~~~~~~a~~AvDG~~~~~~-~~~~c~~-t~~~~~pWw~VDLg~~~~i~~V~i~--n 84 (881)
.+|+. ..+|||--++-.|-=. +.--....||+..++- +.|+--| ++.+...=++||||+++.|+.|++. .
T Consensus 271 ~lpyRg~l~peeNia~~~~~aq~~~--ge~r~alldgd~~~ydl~~gysRh~i~D~~~sgi~i~LG~p~iINhIrmllWd 348 (620)
T KOG4350|consen 271 ELPYRGCLSPEENIAPHYPHAQPLS--GECRDALLDGDVTTYDLSNGYSRHCINDENISGIQIDLGKPFIINHIRMLLWD 348 (620)
T ss_pred cCCcccccCchhccccccccccccc--chhhhhhccCCcceeecccCccccccCcccceeEEEecCCchhhhhhhhhhhc
Confidence 45654 3579999888776432 2223457899986554 4444455 5777888999999999999999975 3
Q ss_pred cCCCCCCCCcccEEEEccC
Q psy11954 85 RGCCGHQPLQDLEIRVGNS 103 (881)
Q Consensus 85 r~d~~~~~~~~~~i~v~~~ 103 (881)
|. .|...+.|.|+-+
T Consensus 349 rd----sraysY~veVSmD 363 (620)
T KOG4350|consen 349 RD----SRAYSYQVEVSMD 363 (620)
T ss_pred cc----ccceEEEEEEecc
Confidence 32 5666777777655
No 56
>cd08365 APC10-like1 APC10-like DOC1 domains of E3 ubiquitin ligases that mediate substrate ubiquitination. This model represens the APC10-like DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. APC10/DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included here. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling a SCF-ROC1-like E3 ubiquitin ligase complex consisting of Skp1, CUL7, Fbx29 F-box protein, and ROC1 (RING-box protein 1) and promotes ubiquitination. CUL7 is a multi-domain protein with a C-terminal cullin domain that binds ROC1 and a centrally positioned APC10/DOC1 domain. HECTD3 contains a C-te
Probab=79.42 E-value=19 Score=33.76 Aligned_cols=61 Identities=16% Similarity=0.212 Sum_probs=45.0
Q ss_pred CCCCCcCCCCCCCcCCCceeccCCCCCCcEEEEcCCeEEEEEEEEEcc-CCCCCCCCcccEEEEccCC
Q psy11954 38 PSSNANDGELTTVHDGKRCTETQKEVSPWWQVDLLRPYPIRIVRITTR-GCCGHQPLQDLEIRVGNST 104 (881)
Q Consensus 38 ~a~~AvDG~~~~~~~~~~c~~t~~~~~pWw~VDLg~~~~i~~V~i~nr-~d~~~~~~~~~~i~v~~~~ 104 (881)
++....||+.++.|++. +.+..-|.++-+.....|..+.|+-- .| ..-.=..+.|++|++.
T Consensus 16 gv~~L~D~~~~tyWQSD-----G~q~pH~I~i~f~k~v~i~~l~l~vd~~D-eSYtP~~I~V~~G~~~ 77 (131)
T cd08365 16 DASRLTDGNTSTYWQSD-----GSQGSHWIRLKMKPDVLVRHLSLAVDATD-SSYMPQRVVVAGGRSA 77 (131)
T ss_pred hHHHhhcCCCCceEccC-----CCCCCEEEEEEEcCCcEEEEEEEEecCCC-CCCCCcEEEEEecCCH
Confidence 78899999999999764 23335699999999999999999963 22 1112235677788763
No 57
>PF14704 DERM: Dermatopontin
Probab=78.28 E-value=14 Score=35.78 Aligned_cols=117 Identities=16% Similarity=0.336 Sum_probs=72.0
Q ss_pred CCCeEEEECCCCceeeCCceeEeC---CCcccCCCCcccccccCCCCCCcceeeeehhhhhhhccccccccCCCCCc-CC
Q psy11954 299 LGSTISYACPEGNMLVGSATRTCK---EGFWTGVAPTCQYFQLQPMDVPNLVLYLFLSKLFRESYERLNVDCGKLEH-IE 374 (881)
Q Consensus 299 ~gs~v~y~C~~Gy~l~G~~~~~C~---~G~Ws~~~P~C~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~-~~ 374 (881)
++..+.|.|+.|..|.+-.+.... +..|. -.|.. .+. +.
T Consensus 3 ~d~~f~f~Cp~gq~i~~v~S~~~n~~eDR~W~---F~C~~----------------------------------~~~~~~ 45 (152)
T PF14704_consen 3 YDQPFSFQCPSGQGISGVRSYHSNNREDRRWS---FGCSP----------------------------------VGSGPT 45 (152)
T ss_pred CCCCEEEECCCCCEEEEEEEEeCCCCCcccEE---EEEEe----------------------------------CCCCCC
Confidence 567889999999999888877776 56784 34654 222 01
Q ss_pred CceEEecCCcccCCcEEEEEeCCCcEEeCcceEEec--CCCcccCCCCcccc------cccCCCCCcCCCeEEcCCCCCC
Q psy11954 375 HGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCG--DGGKWNGTEPQCLF------DWCAEPPQISGGIVTTSGRRTG 446 (881)
Q Consensus 375 nG~~~~~~~~~~~g~~~~~~C~~Gy~l~G~~~~~C~--~~G~Ws~~~P~C~~------~~C~~p~~~~ng~~~~~~~~~g 446 (881)
.+.-.-......++..+.|+|..|+.|.|-.+..=. .|..|. ..|.. ..|.. .+.....+.
T Consensus 46 ~~~~~~~~~vN~~d~~~~~tCp~n~~i~G~~S~h~n~~eDR~w~---f~C~~~~~~~~~~C~~--------~t~~~N~~d 114 (152)
T PF14704_consen 46 QGSSCWWSYVNNYDQPFNFTCPSNYYITGMQSYHDNSKEDRRWQ---FQCCRINGATLYNCYW--------TTGYVNNYD 114 (152)
T ss_pred ccceEcchhhhccCCcEEEECCCCCEEEEEEEEecCCcccCceE---EEEEecCCceeeccee--------cccccccCC
Confidence 111111112335788999999999999987665433 366776 23322 12220 001112567
Q ss_pred CeEEEEcCCCceeeCce
Q psy11954 447 SVATYSCEPGFILFGSN 463 (881)
Q Consensus 447 s~~~y~C~~Gy~l~g~~ 463 (881)
....|.-..|+.|.|-.
T Consensus 115 ~~~~~~~~~~~~i~G~~ 131 (152)
T PF14704_consen 115 GPLDFTVPSGYVITGVS 131 (152)
T ss_pred CcEEEEcCCCcEEEeEe
Confidence 77888888888888754
No 58
>PF03256 APC10: Anaphase-promoting complex, subunit 10 (APC10); InterPro: IPR004939 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. One of the subunits of the APC that is required for ubiquitination activity is APC10, a one-domain protein homologous to a sequence element, termed the DOC domain, found in several hypothetical proteins that may also mediate ubiquitination reactions, because they contain combinations of either RING finger (see PDOC00449 from PROSITEDOC), cullin (see PDOC00967 from PROSITEDOC) or HECT (see PDOC50237 from PROSITEDOC) domains [, , ]. The DOC domain consists of a beta-sandwich, in which a five-stranded antiparallel beta-sheet is packed on top of a three stranded antiparallel beta-sheet, exhibiting a 'jellyroll' fold [, ]. Proteins known to contain a DOC domain include: Eucaryotic Doc1/Apc10. Mammalian protein associated with the transcription factor Myc (PAM). Mouse runty-jerky-sterile (RJS) protein. Human HERC2, the ortholog of RJS. ; PDB: 1GQP_B 1JHJ_A.
Probab=78.19 E-value=2.5 Score=42.59 Aligned_cols=70 Identities=19% Similarity=0.208 Sum_probs=42.2
Q ss_pred eeccCCCCCCCCCCc-CCCCCCCcCCCceeccCCCCCCcEEEEcCCeEEEEEEEEEcc--CCCCCCCCcccEEEEccCCC
Q psy11954 29 NQSSTIRGAPSSNAN-DGELTTVHDGKRCTETQKEVSPWWQVDLLRPYPIRIVRITTR--GCCGHQPLQDLEIRVGNSTD 105 (881)
Q Consensus 29 ~qSS~~~~~~a~~Av-DG~~~~~~~~~~c~~t~~~~~pWw~VDLg~~~~i~~V~i~nr--~d~~~~~~~~~~i~v~~~~~ 105 (881)
.-||.-.+.+...+. ||+.++.|++. ....-|..|.+.....|..|.|+-- .|-. -.=..+.|++|++..
T Consensus 37 ~vSS~K~g~gv~~~LrD~~~~TyWQSD------G~qpH~I~i~f~k~v~I~~l~iyvd~~~DeS-YtPs~I~V~aG~~~~ 109 (193)
T PF03256_consen 37 SVSSCKPGFGVAELLRDGSTETYWQSD------GSQPHWITIQFHKRVIISSLSIYVDYKQDES-YTPSKISVRAGNSPH 109 (193)
T ss_dssp EES--BTTBSCHGHCHSS-TT--EE--------SSSSEEEEEEEEEEEEE-EEEEEEEHHHHGG-GSEEEEEEEEESSTT
T ss_pred EEecCCCCCCchheeeCCChhHhhccC------CCCCEEEEEEEcCCcEEEEEEEEEccCcCCC-CCceEEEEEEeCCcC
Confidence 356655555555345 99999999753 2346799999999999999999842 2311 122467888888843
No 59
>PF06588 Muskelin_N: Muskelin N-terminus; InterPro: IPR010565 This entry represents the N-terminal region of muskelin and is found in conjunction with several IPR006652 from INTERPRO repeats. Muskelin is an intracellular, kelch repeat protein that is needed in cell-spreading responses to the matrix adhesion molecule, thrombospondin-1 [].
Probab=76.55 E-value=12 Score=37.34 Aligned_cols=63 Identities=14% Similarity=0.241 Sum_probs=44.8
Q ss_pred cccccCCCCceeccCCCCCCCCCCcCCCCCCCcCCCceeccCCCCCCcEEEEcCCeEEEEEEEEE--ccCCCCCCCCccc
Q psy11954 19 GTNVALRRPTNQSSTIRGAPSSNANDGELTTVHDGKRCTETQKEVSPWWQVDLLRPYPIRIVRIT--TRGCCGHQPLQDL 96 (881)
Q Consensus 19 ~~nlA~~k~a~qSS~~~~~~a~~AvDG~~~~~~~~~~c~~t~~~~~pWw~VDLg~~~~i~~V~i~--nr~d~~~~~~~~~ 96 (881)
..||-..||..||| ||.+.+ ....+|.-+.|..+..|..|..= .+. ..-.++.|
T Consensus 21 P~NIlvd~P~dqsS-----------------RWss~~-----~~~~QyiiLkL~~paiV~sItFGKy~K~--HvCNlK~f 76 (199)
T PF06588_consen 21 PENILVDKPNDQSS-----------------RWSSSS-----NSPPQYIILKLESPAIVKSITFGKYEKP--HVCNLKKF 76 (199)
T ss_pred hhheeecCCCCccc-----------------cccCCC-----CCCCcEEEEEcCCCeEEEEEeccccccC--ccccceee
Confidence 45777777777777 554332 34789999999999999999773 332 22368899
Q ss_pred EEEEccCCC
Q psy11954 97 EIRVGNSTD 105 (881)
Q Consensus 97 ~i~v~~~~~ 105 (881)
+|..|-+.+
T Consensus 77 kv~gG~~~~ 85 (199)
T PF06588_consen 77 KVYGGMDEE 85 (199)
T ss_pred EEeccCCHH
Confidence 999886644
No 60
>PF13163 DUF3999: Protein of unknown function (DUF3999)
Probab=74.70 E-value=18 Score=41.51 Aligned_cols=97 Identities=15% Similarity=0.164 Sum_probs=57.0
Q ss_pred CcEEEEcCCe-EEEEEEEEEccCCCCCCCCcccEEEEccCCCCCCCCCccCCCCCCCCCCC-cccceeeccCCCCCCCce
Q psy11954 65 PWWQVDLLRP-YPIRIVRITTRGCCGHQPLQDLEIRVGNSTDLQKNPLCAWFPGTLGHQPL-QDLEIRVGNSTDLQKNPL 142 (881)
Q Consensus 65 pWw~VDLg~~-~~i~~V~i~nr~d~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 142 (881)
-=|-|||.+. -.|..++|-.... +.---.+++|..|.|.. +|++| .|.+++-
T Consensus 114 ~~~Lld~s~~~~~l~~L~L~w~~~---~~~~~~~v~VeaSdDl~------------~W~~l~~~~~l~~----------- 167 (429)
T PF13163_consen 114 RGWLLDLSALKEPLDALRLDWPQS---NFNWQARVSVEASDDLQ------------HWRPLAGDAQLMD----------- 167 (429)
T ss_pred cEEEEECcccccchhheEEEeecC---CCCceEEEEEEEecCcc------------cceEccCCceEEE-----------
Confidence 3588999877 5788888876431 11111256666665543 57777 5555431
Q ss_pred eeeccCccCCCceEEEeCCCCCcceEEEEEEecCccceEeeEEEeeccc
Q psy11954 143 CAWFPGTLEEGITKSFTCARTLVGQNVFIQLVGVEGSLSLCEVEIFTTD 191 (881)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~gRyV~i~~~g~~~~l~l~EveV~g~~ 191 (881)
.......=....|.++ +..+||+||.+.+......|..+++....
T Consensus 168 ---L~~~~~~l~~~~I~L~-~~~~rYLRl~~~~~~~~p~l~~~~l~~~~ 212 (429)
T PF13163_consen 168 ---LSNGGQRLVQDRIELP-GSNARYLRLTWNDPQSAPPLTSVSLESQQ 212 (429)
T ss_pred ---eccCCcceeeeeEccC-CCCCceEEEEeCCCCCCCcceeEEeeecc
Confidence 1100001112356665 57899999999764556677777777543
No 61
>cd08665 APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit of the SCF-ROC1-like E3 ubiquitin ligase complex that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in CUL7, a subunit of the SCF-ROC1-like E3 Ubiquitin (Ub) ligase complex, which mediates substrate ubiquitination (or ubiquitylation), and is a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling the SCF-ROC1-like E3 Ub ligase complex consisting of the adapter protein Skp1, CUL7, the WD40 repeat-containing F-box Fbw8 (also known as Fbx29), and ROC1 (RING-box protein 1). CUL7 is a large protein with a C-terminal cullin domain that binds ROC1 and additional domains, including an APC10/DOC1 domain. While the Fbw8 protein is responsible for substrate protein recognition, the ROC1 RING domain recruits an Ub-charged E2 Ub-conjugating enzyme for substrate ubiqui
Probab=73.40 E-value=40 Score=31.61 Aligned_cols=63 Identities=14% Similarity=0.141 Sum_probs=46.3
Q ss_pred CCCCCCcCCCCCCCcCCCceeccCCCCCCcEEEEcCCeEEEEEEEEEccC-CCCCCCCcccEEEEccCCC
Q psy11954 37 APSSNANDGELTTVHDGKRCTETQKEVSPWWQVDLLRPYPIRIVRITTRG-CCGHQPLQDLEIRVGNSTD 105 (881)
Q Consensus 37 ~~a~~AvDG~~~~~~~~~~c~~t~~~~~pWw~VDLg~~~~i~~V~i~nr~-d~~~~~~~~~~i~v~~~~~ 105 (881)
.++....||+.++.|++. +.+-.-|..+-+..-..|+++.|+--. | ..-.=..+.|++|++..
T Consensus 14 ~~~~~L~D~~~~tyWQSd-----G~q~pH~I~i~f~k~v~I~~l~i~v~~~D-eSYtPs~I~V~~G~~~~ 77 (131)
T cd08665 14 HRANKLTDGNPKTYWESN-----GSTGSHYINIHMHRGVVIRQLYMLVASED-SSYMPARVVVLGGDSPS 77 (131)
T ss_pred ccHHHhhcCCCCceEccC-----CCCCCeEEEEEECCCcEEEEEEEEecCCC-CCcCCeeEEEEecCCHH
Confidence 478899999999999754 123478999999999999999999632 2 11122357788887743
No 62
>cd08666 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a HECT E3 ubiquitin ligase protein that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in HECTD3, a HECT (Homologous to the E6-AP Carboxyl Terminus) E3 ubiquitin ligase protein. HECT E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), and are a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. They also regulate the trafficking of many receptors, channels, transporters and viral proteins. HECTD3 (HECT domain-containing protein3) contains a C-terminal HECT domain with the active site for ubiquitin transfer onto substrates, and an N-terminal APC10/DOC1 domain, which is responsible for substrate recognition and binding. HECTD3 specifically recognizes the Trio-binding protein, Tara (Trio-associated repeat on actin), implicated in regulating actin cytoskeletal, cell motility and cell growth. Tara also binds to TRF1 and may participate i
Probab=71.03 E-value=10 Score=35.68 Aligned_cols=68 Identities=15% Similarity=0.161 Sum_probs=49.5
Q ss_pred eeccCCCCCCCCCCcCCCCCCCcCCCceeccCCCCCCcEEEEcCCeEEEEEEEEEccC-CCCCCCCcccEEEEcc
Q psy11954 29 NQSSTIRGAPSSNANDGELTTVHDGKRCTETQKEVSPWWQVDLLRPYPIRIVRITTRG-CCGHQPLQDLEIRVGN 102 (881)
Q Consensus 29 ~qSS~~~~~~a~~AvDG~~~~~~~~~~c~~t~~~~~pWw~VDLg~~~~i~~V~i~nr~-d~~~~~~~~~~i~v~~ 102 (881)
+-||.-.++++....||+.++.|++. +.+-.-|.++.+..-..|+++.|+.-- | ..-.=..+.|++|+
T Consensus 11 svSS~k~g~gv~~L~D~~~~tyWQSd-----G~qgpH~I~l~f~~~v~i~~l~i~v~~~D-eSYtP~~I~V~~G~ 79 (134)
T cd08666 11 EVSSYTDDFNVSCLTDGDPDTYWESD-----GSQGQHWIRLHMKKGTIIKKLLLTVDATD-DNYMPKRVAVYGGE 79 (134)
T ss_pred EEEcCCCCCCHHHhccCCCCccEecC-----CCCCCeEEEEEECCCcEeeEEEEEecCCC-CCcCCcEEEEEecC
Confidence 34776667889999999999999754 223378999999999999999998642 2 11122355666776
No 63
>smart00008 HormR Domain present in hormone receptors.
Probab=62.83 E-value=6.3 Score=32.64 Aligned_cols=33 Identities=30% Similarity=0.548 Sum_probs=27.0
Q ss_pred ccCCCEEEEEcCCCCEEcCC---CeeEeCCCCeecC
Q psy11954 824 TTYNSAVEYHCVPQYQRIGP---YLRKCMEDGSWSG 856 (881)
Q Consensus 824 ~~~g~~v~f~C~~Gy~l~G~---~~~~C~~~G~Ws~ 856 (881)
...|+++...|..++..... .++.|.++|.|+.
T Consensus 18 t~~G~~~~~~CP~~~~g~~~~~~a~R~C~~~G~W~~ 53 (70)
T smart00008 18 TPAGQLVEVPCPDYFSGFSYKTGASRNCTENGGWSP 53 (70)
T ss_pred CCCCCEEEecCCCcccCcCCCCCEEEEcCCCCCCcc
Confidence 45689999999998765522 7899999999995
No 64
>PF02793 HRM: Hormone receptor domain; InterPro: IPR001879 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. This domain is found in the extracellular part of some of the secretin-like (family 2) GPCRs including the calcitonin receptor; corticotropin releasing factor receptor 1; diuretic hormone receptor; glucagon-like peptide 1 receptor; and parathyroid hormone peptide receptor.; GO: 0004930 G-protein coupled receptor activity, 0016020 membrane; PDB: 3EHT_A 3EHU_A 2L27_A 3EHS_A 4DLO_B 2QKH_A 3C5T_A 3C59_A 3IOL_A 3N7R_B ....
Probab=56.78 E-value=12 Score=30.52 Aligned_cols=34 Identities=35% Similarity=0.610 Sum_probs=27.3
Q ss_pred eecCcEEEEEcCCCcee-----cCCceeeeccCCcccCC
Q psy11954 683 TYYGTAVLYECDENYRL-----EGHARRLCLENGTWSSG 716 (881)
Q Consensus 683 ~~~g~~v~y~C~~Gy~L-----~G~~~~~C~~~G~Ws~~ 716 (881)
...|.++...|..++.. .|.+++.|.++|+|...
T Consensus 17 T~~G~~a~~~CP~~~~~~~~~~~g~a~R~C~~nG~W~~~ 55 (66)
T PF02793_consen 17 TPAGETASQPCPSGFYGFGSDTSGNATRNCTENGTWEEH 55 (66)
T ss_dssp BETTEEEEEECSTTSTCCTSSTTSEEEEEEETTSSBECS
T ss_pred CCCCCEEEeeCcCCccccccccceeEEEEcCCCCcCCCc
Confidence 35789999999998742 45688999999999863
No 65
>PF02793 HRM: Hormone receptor domain; InterPro: IPR001879 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. This domain is found in the extracellular part of some of the secretin-like (family 2) GPCRs including the calcitonin receptor; corticotropin releasing factor receptor 1; diuretic hormone receptor; glucagon-like peptide 1 receptor; and parathyroid hormone peptide receptor.; GO: 0004930 G-protein coupled receptor activity, 0016020 membrane; PDB: 3EHT_A 3EHU_A 2L27_A 3EHS_A 4DLO_B 2QKH_A 3C5T_A 3C59_A 3IOL_A 3N7R_B ....
Probab=54.79 E-value=14 Score=30.09 Aligned_cols=37 Identities=24% Similarity=0.429 Sum_probs=27.0
Q ss_pred cCCCeEEE-ccCCceeeccccCceeEEEEccCCeeecC
Q psy11954 761 CLPGKRFY-YHRGIFRLQNTQKVSYTRTCTKRGTWSGH 797 (881)
Q Consensus 761 ~~g~~v~~-C~~Gy~l~G~~~~~~~~~~C~~~G~Ws~~ 797 (881)
..|.++.. |..++...+.......++.|..+|+|...
T Consensus 18 ~~G~~a~~~CP~~~~~~~~~~~g~a~R~C~~nG~W~~~ 55 (66)
T PF02793_consen 18 PAGETASQPCPSGFYGFGSDTSGNATRNCTENGTWEEH 55 (66)
T ss_dssp ETTEEEEEECSTTSTCCTSSTTSEEEEEEETTSSBECS
T ss_pred CCCCEEEeeCcCCccccccccceeEEEEcCCCCcCCCc
Confidence 46778888 99888543332233489999999999873
No 66
>smart00008 HormR Domain present in hormone receptors.
Probab=51.34 E-value=13 Score=30.78 Aligned_cols=32 Identities=34% Similarity=0.519 Sum_probs=25.8
Q ss_pred ecCcEEEEEcCCCceecCC---ceeeeccCCcccC
Q psy11954 684 YYGTAVLYECDENYRLEGH---ARRLCLENGTWSS 715 (881)
Q Consensus 684 ~~g~~v~y~C~~Gy~L~G~---~~~~C~~~G~Ws~ 715 (881)
..|+++...|..++..... .++.|.++|.|+.
T Consensus 19 ~~G~~~~~~CP~~~~g~~~~~~a~R~C~~~G~W~~ 53 (70)
T smart00008 19 PAGQLVEVPCPDYFSGFSYKTGASRNCTENGGWSP 53 (70)
T ss_pred CCCCEEEecCCCcccCcCCCCCEEEEcCCCCCCcc
Confidence 4688999999998765422 7899999999995
No 67
>KOG4350|consensus
Probab=50.99 E-value=92 Score=34.52 Aligned_cols=59 Identities=17% Similarity=0.169 Sum_probs=41.9
Q ss_pred CcCCCC-CCCcCCCceeccCCCCCCcEEEEcCCeEEEEEEEEEccCCCCCCCCcccEEEEccCC
Q psy11954 42 ANDGEL-TTVHDGKRCTETQKEVSPWWQVDLLRPYPIRIVRITTRGCCGHQPLQDLEIRVGNST 104 (881)
Q Consensus 42 AvDG~~-~~~~~~~~c~~t~~~~~pWw~VDLg~~~~i~~V~i~nr~d~~~~~~~~~~i~v~~~~ 104 (881)
.++|+. .-+|.+|...|--. +-=..|-|+++|.|.+++|..=. |.+|...|-|.|+.+.
T Consensus 454 LiNGD~~~YDWDsGYTCHQlG--SG~IvvqLaQPY~igSmRlLLWd--CDDR~YSyYvevStNq 513 (620)
T KOG4350|consen 454 LINGDSSSYDWDSGYTCHQLG--SGLIVVQLAQPYIIGSMRLLLWD--CDDRFYSYYVEVSTNQ 513 (620)
T ss_pred hccCCcccccCcCCcchhhcC--CceEEEEecCceeeeeeeEEEEe--cCCCceeEEEEEEeCc
Confidence 467775 45688886555322 34589999999999999986432 4468888877777653
No 68
>KOG4289|consensus
Probab=44.65 E-value=69 Score=41.17 Aligned_cols=37 Identities=27% Similarity=0.500 Sum_probs=29.8
Q ss_pred eecCcEEEEEcCCCcEEcCCCceeeccCCcccCC-ccccc
Q psy11954 486 TYLGSEVLYSCSRNYRLVGHPRRSCLESKVWSDT-APKCE 524 (881)
Q Consensus 486 ~~~gs~v~y~C~~Gy~L~G~~~~tC~~~G~Ws~~-~P~C~ 524 (881)
..+|+.+...|..|- .|...+.|.+.|.|.++ .-.|.
T Consensus 1871 tkfG~~a~~pCP~G~--~G~AvR~C~e~~gWl~pnlfNCT 1908 (2531)
T KOG4289|consen 1871 TKFGSPAAVPCPKGS--SGLAVRHCDETGGWLPPNLFNCT 1908 (2531)
T ss_pred cccCCcccccCCCCc--chhhhhhhhccCCCCCchhcccC
Confidence 467999999999984 58889999999999863 23565
No 69
>PF14652 DUF4457: Domain of unknown function (DUF4457)
Probab=44.41 E-value=1.1e+02 Score=33.71 Aligned_cols=67 Identities=15% Similarity=0.087 Sum_probs=42.8
Q ss_pred CCCCCCcCCCCCCCcCCCc-eeccCCCCCCcEEEEcCCeEEEEEEEEEccCC---CCCCCCcccEEEEccC
Q psy11954 37 APSSNANDGELTTVHDGKR-CTETQKEVSPWWQVDLLRPYPIRIVRITTRGC---CGHQPLQDLEIRVGNS 103 (881)
Q Consensus 37 ~~a~~AvDG~~~~~~~~~~-c~~t~~~~~pWw~VDLg~~~~i~~V~i~nr~d---~~~~~~~~~~i~v~~~ 103 (881)
....+.|||..-+.-...+ ++.=......-..++|.+...|..|||||-.- ....-++.++|.+...
T Consensus 54 r~l~~Lidg~~~T~d~~~MWl~pf~~~~~~~i~i~f~~~~~is~iRIWNYNks~~ds~~GvK~v~I~ldg~ 124 (329)
T PF14652_consen 54 RTLDKLIDGVNLTTDDEHMWLAPFSPGKQHVITIRFPEPTSISGIRIWNYNKSREDSYRGVKDVKIYLDGK 124 (329)
T ss_pred cceeEEECCeEccCcccceEEeecCCCCCEEEEEEeCCCceeeEEEEEcCCCCcchhhcCeEEEEEEECCE
Confidence 3468899998755543222 22212567888999999999999999998521 0111244566666544
No 70
>cd08664 APC10-HERC2 APC10-like DOC1 domain present in HERC2 (HECT domain and RLD2). This model represents the APC10/DOC1 domain present in HERC2 (HECT domain and RLD2), a large multi-domain protein with three RCC1-like domains (RLDs), additional internal domains including a zinc finger ZZ-type and Cyt-b5 (Cytochrome b5-like Heme/Steroid binding) domains, and a C-terminal HECT (Homologous to the E6-AP Carboxyl Terminus) domain. The APC10/DOC1 domain of HERC2 is a homolog of the APC10 subunit and the DOC1 domain present in E3 ubiquitin ligases which mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. As suggested by structural relationships between HERC2 and other proteins such as HERC1, the proposed role for HERC2 in protein trafficking and degradation pathways is consistent with observations that mutations in HERC2 lead to neuromuscular secretory vesicle and sperm acrosome defects, other develo
Probab=44.06 E-value=63 Score=31.11 Aligned_cols=62 Identities=13% Similarity=0.121 Sum_probs=45.7
Q ss_pred CCCCCCCcCCCCCCCcCCCceeccCCCCCCcEEEEcCCeEEEEEEEEEccC-CCCCCCCcccEEEEccCC
Q psy11954 36 GAPSSNANDGELTTVHDGKRCTETQKEVSPWWQVDLLRPYPIRIVRITTRG-CCGHQPLQDLEIRVGNST 104 (881)
Q Consensus 36 ~~~a~~AvDG~~~~~~~~~~c~~t~~~~~pWw~VDLg~~~~i~~V~i~nr~-d~~~~~~~~~~i~v~~~~ 104 (881)
...|....|| .++.|++. +.+..-|.++-+..-..|+++.|+--. | ..-.=..+.|++|++.
T Consensus 37 ~~~~~~L~D~-~~TYWQSd-----G~q~~HwI~l~~~~~v~I~~L~i~vd~~D-eSY~Ps~I~V~~G~~~ 99 (152)
T cd08664 37 ENQAKRLIDG-SGSYWQSS-----GSQGKHWIRLELHPDVLIHSLKIIVDPAD-SSYMPSLVVVSGGDSL 99 (152)
T ss_pred cccHHHhcCC-CCCeeccC-----CCCCceEEEEEECCCcEEEEEEEEecCCC-CCcCCceEEEEecCCh
Confidence 3678999999 99999764 234457999999999999999999542 2 1112235677888773
No 71
>PF07461 NADase_NGA: Nicotine adenine dinucleotide glycohydrolase (NADase); InterPro: IPR010900 This family consists of several bacterial nicotine adenine dinucleotide glycohydrolase (NGA) proteins which appear to be specific to Streptococcus pyogenes. NAD glycohydrolase (NADase) is a potential virulence factor. Streptococcal NADase may contribute to virulence by its ability to cleave beta-NAD at the ribose-nicotinamide bond, depleting intracellular NAD pools and producing the potent vasoactive compound nicotinamide [].; PDB: 3PNT_C.
Probab=34.18 E-value=13 Score=39.71 Aligned_cols=54 Identities=19% Similarity=0.132 Sum_probs=0.0
Q ss_pred eccCCC--CCCCCCCcCCCCCCCcCCCceeccCCCCCCcEEEEcCCeEEEEEEEEEccC
Q psy11954 30 QSSTIR--GAPSSNANDGELTTVHDGKRCTETQKEVSPWWQVDLLRPYPIRIVRITTRG 86 (881)
Q Consensus 30 qSS~~~--~~~a~~AvDG~~~~~~~~~~c~~t~~~~~pWw~VDLg~~~~i~~V~i~nr~ 86 (881)
+|++.. +..+-+|+||+..+.|..+. -+.-...=++|++.++..|.+|.|+|-.
T Consensus 58 A~~T~sked~~~~n~lDg~~~TsW~En~---~G~GVGE~Ls~kf~sPi~i~~IqIiNGf 113 (446)
T PF07461_consen 58 ASATSSKEDNHIMNTLDGDMKTSWCENS---PGGGVGETLSYKFASPIKIDRIQIINGF 113 (446)
T ss_dssp -----------------------------------------------------------
T ss_pred eccccccccchhheeecCCceeeEeecC---CCCCcceEEEEEecCceeeceEEEEecC
Confidence 455543 34577999999999996542 1223566789999999999999999973
No 72
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=30.20 E-value=38 Score=21.74 Aligned_cols=19 Identities=37% Similarity=0.695 Sum_probs=13.7
Q ss_pred EEEcCCCcEEcCCCceeecc
Q psy11954 493 LYSCSRNYRLVGHPRRSCLE 512 (881)
Q Consensus 493 ~y~C~~Gy~L~G~~~~tC~~ 512 (881)
+.+|.+||.|.... .+|+.
T Consensus 3 ~C~C~~Gy~l~~d~-~~C~D 21 (24)
T PF12662_consen 3 TCSCPPGYQLSPDG-RSCED 21 (24)
T ss_pred EeeCCCCCcCCCCC-Ccccc
Confidence 45799999987644 56763
Done!