RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11954
(881 letters)
>gnl|CDD|128870 smart00607, FTP, eel-Fucolectin Tachylectin-4 Pentaxrin-1 Domain.
Length = 151
Score = 132 bits (334), Expect = 7e-36
Identities = 53/175 (30%), Positives = 72/175 (41%), Gaps = 35/175 (20%)
Query: 19 GTNVALRRPTNQSSTIRGAPS-----SNANDGELTTVHDGKRCTETQKEVSPWWQVDLLR 73
NVA R P QS+ RGAP S A DG + C+ T+K +PWW+VDLL+
Sbjct: 1 QENVAGRGPATQSTYGRGAPPGLSHASAAIDGNRASFTPEGSCSHTEKRSNPWWRVDLLQ 60
Query: 74 PYPIRIVRITTRGCCGHQPLQDLEIRVGNSTDLQKNPLCAWFPGTLGHQPLQDLEIRVGN 133
I V IT RG C + + I +GNS +
Sbjct: 61 YMTIHSVTITNRGDCCGERITGARILIGNSLE---------------------------- 92
Query: 134 STDLQKNPLCAWFPGTLEEGITKSFTCARTLVGQNVFIQLVGVEGSLSLCEVEIF 188
+ N G + G TK+F C ++G+ V + L SL LCEVE+
Sbjct: 93 --NGGINNPNCSTGGLMAGGETKTFCCPPPMIGRYVTVYLPKPNESLILCEVEVN 145
>gnl|CDD|165022 PHA02639, PHA02639, EEV host range protein; Provisional.
Length = 295
Score = 70.5 bits (172), Expect = 4e-13
Identities = 59/193 (30%), Positives = 87/193 (45%), Gaps = 30/193 (15%)
Query: 623 YKIGALVKYRCERGYKVEGEPLSTC---EDTGSWSGSVPECIYVDCGNPETVPNGGFTLT 679
Y+IG L++Y C Y + G+ TC ++ WS P C+ +C +P ++ NG
Sbjct: 40 YEIGKLIEYTCNTDYALIGDRFRTCIKDKNNAIWSNKAPFCMLKECNDPPSIINGKIYNK 99
Query: 680 SNATYYGTAVLYECDEN----YRLEGHARRLCLENGTWSSGLPTCKGNEGHARRLCLENG 735
G + Y C+E+ Y L G+ + C+++ +W P CK + R L+NG
Sbjct: 100 REMYKVGDEIYYVCNEHKGVQYSLVGNEKITCIQDKSWKPDPPICK--MINCRFPALQNG 157
Query: 736 TWSSGLPTCKGCKTPKKSLTRPALSCLPGKRFYYHRGIFRLQNTQKVSYTRTCTKRGTWS 795
+ +G+P+ K K K TR SC G F L +K S TC TW
Sbjct: 158 -YINGIPSNK--KFYYK--TRVGFSCKSG---------FDLVG-EKYS---TCNINATWF 199
Query: 796 GHIPTC---KAID 805
IPTC K ID
Sbjct: 200 PSIPTCVRNKPID 212
Score = 60.8 bits (147), Expect = 7e-10
Identities = 49/210 (23%), Positives = 78/210 (37%), Gaps = 39/210 (18%)
Query: 665 CGNPETVPNGGFTLTSNATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTCKGNE 724
C P+ + NG T G + Y C+ +Y L G R C+++
Sbjct: 22 CDKPDDISNGFITELMEKYEIGKLIEYTCNTDYALIGDRFRTCIKDKN------------ 69
Query: 725 GHARRLCLENGTWSSGLPTC--KGCKTPKKSLTRPALSCLP----GKRFYY----HRGI- 773
N WS+ P C K C P + + G YY H+G+
Sbjct: 70 ---------NAIWSNKAPFCMLKECNDPPSIINGKIYNKREMYKVGDEIYYVCNEHKGVQ 120
Query: 774 FRLQNTQKVSYTRTCTKRGTWSGHIPTCKAIDCSHPGSIDNGRV--IIMNQTTTYNSAVE 831
+ L +K+ TC + +W P CK I+C P ++ NG + I N+ Y + V
Sbjct: 121 YSLVGNEKI----TCIQDKSWKPDPPICKMINCRFP-ALQNGYINGIPSNKKFYYKTRVG 175
Query: 832 YHCVPQYQRIGPYLRKCMEDGSWSGDEPRC 861
+ C + +G C + +W P C
Sbjct: 176 FSCKSGFDLVGEKYSTCNINATWFPSIPTC 205
Score = 58.9 bits (142), Expect = 3e-09
Identities = 53/215 (24%), Positives = 84/215 (39%), Gaps = 32/215 (14%)
Query: 346 LVLYLFLSKLFRESYERLNVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGET 405
++LYLF+ + + + C K + I +G +T + G + Y C+ +Y LIG+
Sbjct: 3 IILYLFIGVCYVHGVKSIY--CDKPDDISNGFITELMEKYEIGKLIEYTCNTDYALIGDR 60
Query: 406 RRVC---GDGGKWNGTEPQCLFDWCAEPPQISGGIVTTSGR--RTGSVATYSCEP----G 456
R C + W+ P C+ C +PP I G + + G Y C
Sbjct: 61 FRTCIKDKNNAIWSNKAPFCMLKECNDPPSIINGKIYNKREMYKVGDEIYYVCNEHKGVQ 120
Query: 457 FILFGSNVNIDCG-----------------RLTAIPYGSISYL--NETTYLGSEVLYSCS 497
+ L G N I C R A+ G I+ + N+ Y + V +SC
Sbjct: 121 YSLVG-NEKITCIQDKSWKPDPPICKMINCRFPALQNGYINGIPSNKKFYYKTRVGFSCK 179
Query: 498 RNYRLVGHPRRSCLESKVWSDTAPKC-EGKATKDI 531
+ LVG +C + W + P C K DI
Sbjct: 180 SGFDLVGEKYSTCNINATWFPSIPTCVRNKPIDDI 214
Score = 55.4 bits (133), Expect = 4e-08
Identities = 49/207 (23%), Positives = 84/207 (40%), Gaps = 35/207 (16%)
Query: 468 CGRLTAIPYGSISYLNETTYLGSEVLYSCSRNYRLVGHPRRSCLESK---VWSDTAPKCE 524
C + I G I+ L E +G + Y+C+ +Y L+G R+C++ K +WS+ AP C
Sbjct: 22 CDKPDDISNGFITELMEKYEIGKLIEYTCNTDYALIGDRFRTCIKDKNNAIWSNKAPFCM 81
Query: 525 GKATKDIKVCSNVAV-DRREIR---------CPEPTLPAHSILSVTGNDRLYGRTLIKTA 574
K D N + ++RE+ C E +S++ GN+++ K+
Sbjct: 82 LKECNDPPSIINGKIYNKREMYKVGDEIYYVCNEHKGVQYSLV---GNEKITC-IQDKSW 137
Query: 575 DSASSVATYKIGALPTLPAHSILSVTGNDRLYGRTLIKTADSASSVATYKIGALVKYRCE 634
+ P L I + N + Y +T V + C+
Sbjct: 138 KPDPPICKMINCRFPALQNGYINGIPSNKKFYYKT------------------RVGFSCK 179
Query: 635 RGYKVEGEPLSTCEDTGSWSGSVPECI 661
G+ + GE STC +W S+P C+
Sbjct: 180 SGFDLVGEKYSTCNINATWFPSIPTCV 206
Score = 46.2 bits (109), Expect = 4e-05
Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Query: 786 RTCTK---RGTWSGHIPTCKAIDCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVP----QY 838
RTC K WS P C +C+ P SI NG++ + + Y C QY
Sbjct: 62 RTCIKDKNNAIWSNKAPFCMLKECNDPPSIINGKIYNKREMYKVGDEIYYVCNEHKGVQY 121
Query: 839 QRIGPYLRKCMEDGSWSGDEPRCEKRFNSGIPG 871
+G C++D SW D P C K N P
Sbjct: 122 SLVGNEKITCIQDKSWKPDPPIC-KMINCRFPA 153
Score = 43.9 bits (103), Expect = 2e-04
Identities = 51/212 (24%), Positives = 76/212 (35%), Gaps = 46/212 (21%)
Query: 280 CGSPDRHVNTTFVGTVSTK--LGSTISYACPEGNMLVGSATRTC----KEGFWTGVAPTC 333
C PD ++ F+ + K +G I Y C L+G RTC W+ AP C
Sbjct: 22 CDKPD-DISNGFITELMEKYEIGKLIEYTCNTDYALIGDRFRTCIKDKNNAIWSNKAPFC 80
Query: 334 QYFQLQPMDVPNLVLYLFLSKLFRESYERLNVDCGKLEHIEHGTVTLETTRTTHGAVAIY 393
+ D P+++ +K RE Y+ G Y
Sbjct: 81 MLKECN--DPPSIINGKIYNK--REMYKV-------------------------GDEIYY 111
Query: 394 ACHEN----YTLIGETRRVCGDGGKWNGTEPQCLFDWCAEPPQISG---GIVTTSGRRTG 446
C+E+ Y+L+G + C W P C C P +G GI +
Sbjct: 112 VCNEHKGVQYSLVGNEKITCIQDKSWKPDPPICKMINCRFPALQNGYINGIPSNKKFYYK 171
Query: 447 SVATYSCEPGFILFG---SNVNIDCGRLTAIP 475
+ +SC+ GF L G S NI+ +IP
Sbjct: 172 TRVGFSCKSGFDLVGEKYSTCNINATWFPSIP 203
Score = 38.1 bits (88), Expect = 0.014
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 802 KAIDCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCMEDGS---WSGDE 858
K+I C P I NG + + + +EY C Y IG R C++D + WS
Sbjct: 18 KSIYCDKPDDISNGFITELMEKYEIGKLIEYTCNTDYALIGDRFRTCIKDKNNAIWSNKA 77
Query: 859 PRC 861
P C
Sbjct: 78 PFC 80
>gnl|CDD|214478 smart00032, CCP, Domain abundant in complement control proteins;
SUSHI repeat; short complement-like repeat (SCR). The
complement control protein (CCP) modules (also known as
short consensus repeats SCRs or SUSHI repeats) contain
approximately 60 amino acid residues and have been
identified in several proteins of the complement system.
A missense mutation in seventh CCP domain causes
deficiency of the b subunit of factor XIII.
Length = 56
Score = 63.3 bits (154), Expect = 8e-13
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 367 CGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQC 422
C IE+GTVT + ++G Y+C YTLIG + C + G W+ P C
Sbjct: 1 CPPPPDIENGTVTSSSGTYSYGDTVTYSCDPGYTLIGSSTITCLENGTWSPPPPTC 56
Score = 62.9 bits (153), Expect = 1e-12
Identities = 26/56 (46%), Positives = 29/56 (51%)
Query: 665 CGNPETVPNGGFTLTSNATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTC 720
C P + NG T +S YG V Y CD Y L G + CLENGTWS PTC
Sbjct: 1 CPPPPDIENGTVTSSSGTYSYGDTVTYSCDPGYTLIGSSTITCLENGTWSPPPPTC 56
Score = 61.0 bits (148), Expect = 5e-12
Identities = 22/56 (39%), Positives = 28/56 (50%)
Query: 806 CSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCMEDGSWSGDEPRC 861
C P I+NG V + T +Y V Y C P Y IG C+E+G+WS P C
Sbjct: 1 CPPPPDIENGTVTSSSGTYSYGDTVTYSCDPGYTLIGSSTITCLENGTWSPPPPTC 56
Score = 59.5 bits (144), Expect = 2e-11
Identities = 19/56 (33%), Positives = 26/56 (46%)
Query: 468 CGRLTAIPYGSISYLNETTYLGSEVLYSCSRNYRLVGHPRRSCLESKVWSDTAPKC 523
C I G+++ + T G V YSC Y L+G +CLE+ WS P C
Sbjct: 1 CPPPPDIENGTVTSSSGTYSYGDTVTYSCDPGYTLIGSSTITCLENGTWSPPPPTC 56
Score = 50.6 bits (121), Expect = 3e-08
Identities = 19/50 (38%), Positives = 24/50 (48%)
Query: 611 IKTADSASSVATYKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPEC 660
I+ SS TY G V Y C+ GY + G TC + G+WS P C
Sbjct: 7 IENGTVTSSSGTYSYGDTVTYSCDPGYTLIGSSTITCLENGTWSPPPPTC 56
Score = 45.6 bits (108), Expect = 1e-06
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 280 CGSPDRHVNTTFVGTVST-KLGSTISYACPEGNMLVGSATRTCKE-GFWTGVAPTC 333
C P N T + T G T++Y+C G L+GS+T TC E G W+ PTC
Sbjct: 1 CPPPPDIENGTVTSSSGTYSYGDTVTYSCDPGYTLIGSSTITCLENGTWSPPPPTC 56
Score = 29.4 bits (66), Expect = 0.89
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 783 SYTRTCTKRGTWSGHIPTC 801
S T TC + GTWS PTC
Sbjct: 38 SSTITCLENGTWSPPPPTC 56
>gnl|CDD|153056 cd00033, CCP, Complement control protein (CCP) modules (aka short
consensus repeats SCRs or SUSHI repeats) have been
identified in several proteins of the complement system.
SUSHI repeats (short complement-like repeat, SCR) are
abundant in complement control proteins. The complement
control protein (CCP) modules (also known as short
consensus repeats SCRs or SUSHI repeats) contain
approximately 60 amino acid residues and have been
identified in several proteins of the complement system.
Typically, 2 to 4 modules contribute to a binding site,
implying that the orientation of the modules to each
other is critical for function.
Length = 57
Score = 63.3 bits (154), Expect = 1e-12
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 367 CGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQC 422
C E+GTVT ++G+ Y+C+E YTL+G + C + G W+ P C
Sbjct: 1 CPPPPVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTC 56
Score = 61.7 bits (150), Expect = 3e-12
Identities = 23/57 (40%), Positives = 29/57 (50%)
Query: 665 CGNPETVPNGGFTLTSNATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTCK 721
C P NG T + + YG+ V Y C+E Y L G + C ENG WS PTC+
Sbjct: 1 CPPPPVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTCE 57
Score = 59.4 bits (144), Expect = 2e-11
Identities = 20/57 (35%), Positives = 25/57 (43%)
Query: 806 CSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCMEDGSWSGDEPRCE 862
C P +NG V + +Y S V Y C Y +G C E+G WS P CE
Sbjct: 1 CPPPPVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTCE 57
Score = 57.9 bits (140), Expect = 8e-11
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 468 CGRLTAIPYGSISYLNETTYLGSEVLYSCSRNYRLVGHPRRSCLESKVWSDTAPKCE 524
C G+++ + GS V YSC+ Y LVG +C E+ WS P CE
Sbjct: 1 CPPPPVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTCE 57
Score = 50.2 bits (120), Expect = 5e-08
Identities = 16/48 (33%), Positives = 20/48 (41%)
Query: 614 ADSASSVATYKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECI 661
S +Y G+ V Y C GY + G TC + G WS P C
Sbjct: 10 GTVTGSKGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTCE 57
Score = 47.8 bits (114), Expect = 2e-07
Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 280 CGSPDRHVNTTFVGTVST-KLGSTISYACPEGNMLVGSATRTCKE-GFWTGVAPTCQ 334
C P N T G+ + GST++Y+C EG LVGS+T TC E G W+ PTC+
Sbjct: 1 CPPPPVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTCE 57
Score = 29.7 bits (67), Expect = 0.78
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 783 SYTRTCTKRGTWSGHIPTCK 802
S T TCT+ G WS PTC+
Sbjct: 38 SSTITCTENGGWSPPPPTCE 57
>gnl|CDD|215684 pfam00059, Lectin_C, Lectin C-type domain. This family includes
both long and short form C-type.
Length = 108
Score = 63.5 bits (155), Expect = 3e-12
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 206 VWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGCK 265
WIG T TW W DG V +W +PNN G ++CV + WND C
Sbjct: 42 AWIGLTDIN--TEGTWVWTDGSPVNYTNWAPGEPNNKGGNEDCVEIYTDTNGKWNDEPC- 98
Query: 266 LDYLHWICQH 275
++C+
Sbjct: 99 GSKRLYVCEF 108
>gnl|CDD|153060 cd03590, CLECT_DC-SIGN_like, C-type lectin-like domain (CTLD) of
the type found in human dendritic cell (DC)-specific
intercellular adhesion molecule 3-grabbing non-integrin
(DC-SIGN) and the related receptor, DC-SIGN receptor
(DC-SIGNR). CLECT_DC-SIGN_like: C-type lectin-like
domain (CTLD) of the type found in human dendritic cell
(DC)-specific intercellular adhesion molecule 3-grabbing
non-integrin (DC-SIGN) and the related receptor, DC-SIGN
receptor (DC-SIGNR). This group also contains proteins
similar to hepatic asialoglycoprotein receptor (ASGP-R)
and langerin in human. These proteins are type II
membrane proteins with a CTLD ectodomain. CTLD refers
to a domain homologous to the carbohydrate-recognition
domains (CRDs) of the C-type lectins. DC-SIGN is
thought to mediate the initial contact between dendritic
cells and resting T cells, and may also mediate the
rolling of DCs on epithelium. DC-SIGN and DC-SIGNR bind
to oligosaccharides present on human tissues, as well
as, on pathogens including parasites, bacteria, and
viruses. DC-SIGN and DC-SIGNR bind to HIV enhancing
viral infection of T cells. DC-SIGN and DC-SIGNR are
homotetrameric, and contain four CTLDs stabilized by a
coiled coil of alpha helices. The hepatic ASGP-R is an
endocytic recycling receptor which binds and
internalizes desialylated glycoproteins having a
terminal galactose or N-acetylgalactosamine residues on
their N-linked carbohydrate chains, via the
clathrin-coated pit mediated endocytic pathway, and
delivers them to lysosomes for degradation. It has been
proposed that glycoproteins bearing terminal Sia (sialic
acid) alpha2, 6GalNAc and Sia alpha2, 6Gal are
endogenous ligands for ASGP-R and that ASGP-R
participates in regulating the relative concentration of
serum glycoproteins bearing alpha 2,6-linked Sia. The
human ASGP-R is a hetero-oligomer composed of two
subunits, both of which are found within this group.
Langerin is expressed in a subset of dendritic
leukocytes, the Langerhans cells (LC). Langerin induces
the formation of Birbeck Granules (BGs) and associates
with these BGs following internalization. Langerin
binds, in a calcium-dependent manner, to
glyco-conjugates containing mannose and related sugars
mediating their uptake and degradation. Langerin
molecules oligomerize as trimers with three CTLDs held
together by a coiled-coil of alpha helices.
Length = 126
Score = 63.1 bits (154), Expect = 6e-12
Identities = 29/72 (40%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 206 VWIGAQKDPGITARTWKWVDG--EVVTKPSWGKDQPNNYNG-EQNCVVLDGGRGWLWNDV 262
WIG D T WKWVDG +K W +PNN+ G ++C L WNDV
Sbjct: 58 YWIGL-SDEE-TEGEWKWVDGTPLNSSKTFWHPGEPNNWGGGGEDCAELV-YDSGGWNDV 114
Query: 263 GCKLDYLHWICQ 274
C L+Y WIC+
Sbjct: 115 PCNLEY-RWICE 125
>gnl|CDD|215703 pfam00084, Sushi, Sushi domain (SCR repeat).
Length = 56
Score = 58.7 bits (142), Expect = 3e-11
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 665 CGNPETVPNGGFTLTSNATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTC 720
C P +P+G + T N+ G+ V YECD Y L G + C ++GTWS LP C
Sbjct: 1 CPAPPPIPHGVISTTKNSYQVGSVVRYECDPGYVLVGSSVITCQDDGTWSPPLPEC 56
Score = 52.6 bits (126), Expect = 5e-09
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 806 CSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCMEDGSWSGDEPRC 861
C P I +G + + S V Y C P Y +G + C +DG+WS P C
Sbjct: 1 CPAPPPIPHGVISTTKNSYQVGSVVRYECDPGYVLVGSSVITCQDDGTWSPPLPEC 56
Score = 51.0 bits (122), Expect = 2e-08
Identities = 17/56 (30%), Positives = 24/56 (42%)
Query: 367 CGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQC 422
C I HG ++ G+V Y C Y L+G + C D G W+ P+C
Sbjct: 1 CPAPPPIPHGVISTTKNSYQVGSVVRYECDPGYVLVGSSVITCQDDGTWSPPLPEC 56
Score = 49.9 bits (119), Expect = 4e-08
Identities = 20/56 (35%), Positives = 26/56 (46%)
Query: 468 CGRLTAIPYGSISYLNETTYLGSEVLYSCSRNYRLVGHPRRSCLESKVWSDTAPKC 523
C IP+G IS + +GS V Y C Y LVG +C + WS P+C
Sbjct: 1 CPAPPPIPHGVISTTKNSYQVGSVVRYECDPGYVLVGSSVITCQDDGTWSPPLPEC 56
Score = 49.9 bits (119), Expect = 5e-08
Identities = 17/38 (44%), Positives = 28/38 (73%)
Query: 623 YKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPEC 660
Y++G++V+Y C+ GY + G + TC+D G+WS +PEC
Sbjct: 19 YQVGSVVRYECDPGYVLVGSSVITCQDDGTWSPPLPEC 56
Score = 40.3 bits (94), Expect = 1e-04
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 280 CGSPDRHVNTTFVGT-VSTKLGSTISYACPEGNMLVGSATRTCKE-GFWTGVAPTC 333
C +P + T S ++GS + Y C G +LVGS+ TC++ G W+ P C
Sbjct: 1 CPAPPPIPHGVISTTKNSYQVGSVVRYECDPGYVLVGSSVITCQDDGTWSPPLPEC 56
Score = 32.9 bits (75), Expect = 0.047
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 427 CAEPPQISGGIVTTSGRRT--GSVATYSCEPGFILFGSNVNIDC 468
C PP I G+++T+ GSV Y C+PG++L GS+V I C
Sbjct: 1 CPAPPPIPHGVISTTKNSYQVGSVVRYECDPGYVLVGSSV-ITC 43
Score = 27.5 bits (61), Expect = 3.7
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 785 TRTCTKRGTWSGHIPTC 801
TC GTWS +P C
Sbjct: 40 VITCQDDGTWSPPLPEC 56
>gnl|CDD|153057 cd00037, CLECT, C-type lectin (CTL)/C-type lectin-like (CTLD)
domain. CLECT: C-type lectin (CTL)/C-type lectin-like
(CTLD) domain; protein domains homologous to the
carbohydrate-recognition domains (CRDs) of the C-type
lectins. This group is chiefly comprised of eukaryotic
CTLDs, but contains some, as yet functionally
uncharacterized, bacterial CTLDs. Many CTLDs are
calcium-dependent carbohydrate binding modules; other
CTLDs bind protein ligands, lipids, and inorganic
surfaces, including CaCO3 and ice. Animal C-type
lectins are involved in such functions as extracellular
matrix organization, endocytosis, complement activation,
pathogen recognition, and cell-cell interactions. For
example: mannose-binding lectin and lung surfactant
proteins A and D bind carbohydrates on surfaces (e.g.
pathogens, allergens, necrotic, and apoptotic cells) and
mediate functions associated with killing and
phagocytosis; P (platlet)-, E (endothelial)-, and L
(leukocyte)- selectins (sels) mediate the initial
attachment, tethering, and rolling of lymphocytes on
inflamed vascular walls enabling subsequent lymphocyte
adhesion and transmigration. CTLDs may bind a variety
of carbohydrate ligands including mannose,
N-acetylglucosamine, galactose, N-acetylgalactosamine,
and fucose. Several CTLDs bind to protein ligands, and
only some of these binding interactions are
Ca2+-dependent; including the CTLDs of Coagulation
Factors IX/X (IX/X) and Von Willebrand Factor (VWF)
binding proteins, and natural killer cell receptors.
C-type lectins, such as lithostathine, and some type II
antifreeze glycoproteins function in a Ca2+-independent
manner to bind inorganic surfaces. Many proteins in
this group contain a single CTLD; these CTLDs associate
with each other through several different surfaces to
form dimers, trimers, or tetramers, from which
ligand-binding sites project in different orientations.
Various vertebrate type 1 transmembrane proteins
including macrophage mannose receptor, endo180,
phospholipase A2 receptor, and dendritic and epithelial
cell receptor (DEC205) have extracellular domains
containing 8 or more CTLDs; these CTLDs remain in the
parent model. In some members (IX/X and VWF binding
proteins), a loop extends to the adjoining domain to
form a loop-swapped dimer. A similar conformation is
seen in the macrophage mannose receptor CRD4's putative
non-sugar bound form of the domain in the acid
environment of the endosome. Lineage specific
expansions of CTLDs have occurred in several animal
lineages including Drosophila melanogaster and
Caenorhabditis elegans; these CTLDs also remain in the
parent model.
Length = 116
Score = 60.3 bits (146), Expect = 5e-11
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 206 VWIGAQKDPGITARTWKWVDG-EVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWLWNDVGC 264
VWIG + TWKW DG +V +W +PN E +CVVL WNDV C
Sbjct: 50 VWIGLNDLS--SEGTWKWSDGSPLVDYTNWAPGEPNPGGSE-DCVVLSSSSDGKWNDVSC 106
Query: 265 KLDYLHWICQH 275
L +IC+
Sbjct: 107 S-SKLPFICEK 116
>gnl|CDD|222943 PHA02927, PHA02927, secreted complement-binding protein;
Provisional.
Length = 263
Score = 61.6 bits (149), Expect = 3e-10
Identities = 71/274 (25%), Positives = 96/274 (35%), Gaps = 63/274 (22%)
Query: 280 CGSPDRHVNTTFVGTVST------KLGSTISYACPEG--NMLVGSATRTCKEGFWTGVAP 331
C P R +N F +V T +G TI Y C G +G C WT
Sbjct: 21 CTIPSRPINMKFKNSVETDANANYNIGDTIEYLCLPGYRKQKMGPIYAKCTGTGWT---- 76
Query: 332 TCQYFQLQPMDVPNLVLYLFLSKLFRESYERLNVDCGKLEHIEHGTVTLETTRTTHGAVA 391
LF + +R C I++G L+ G+
Sbjct: 77 -----------------------LFNQCIKR---RCPSPRDIDNGQ--LDIGGVDFGSSI 108
Query: 392 IYACHENYTLIGETRRVCGDGGK----WNGTEPQCLFDWCAEPPQISGGIVT--TSGRRT 445
Y+C+ Y LIGE++ C G WN P C C PP IS G
Sbjct: 109 TYSCNSGYQLIGESKSYCELGSTGSMVWNPEAPICESVKCQSPPSISNGRHNGYEDFYTD 168
Query: 446 GSVATYSCEPGFILFGSNVNIDCG----------RLTAIPYGSIS--YLN----ETTYLG 489
GSV TYSC G+ L G N + C ++ P+ +IS YL+ +
Sbjct: 169 GSVVTYSCNSGYSLIG-NSGVLCSGGEWSDPPTCQIVKCPHPTISNGYLSSGFKRSYSYN 227
Query: 490 SEVLYSCSRNYRLVGHPRRSCLESKVWSDTAPKC 523
V + C Y+L G +C W PKC
Sbjct: 228 DNVDFKCKYGYKLSGSSSSTCSPGNTWQPELPKC 261
Score = 59.7 bits (144), Expect = 1e-09
Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 33/183 (18%)
Query: 626 GALVKYRCERGYKVEGEPLSTCE--DTGS--WSGSVPECIYVDCGNPETVPNGGFTLTSN 681
G+ + Y C GY++ GE S CE TGS W+ P C V C +P ++ NG +
Sbjct: 105 GSSITYSCNSGYQLIGESKSYCELGSTGSMVWNPEAPICESVKCQSPPSISNGRHNGYED 164
Query: 682 ATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTCKGNEGHARRLCLENGTWSSGL 741
G+ V Y C+ Y L G++ LC G WS
Sbjct: 165 FYTDGSVVTYSCNSGYSLIGNSGVLC-------------------------SGGEWSDP- 198
Query: 742 PTCKGCKTPKKSLTRPALSCLPGKRFYYHRGI-FRLQNTQKVS--YTRTCTKRGTWSGHI 798
PTC+ K P +++ LS + + Y+ + F+ + K+S + TC+ TW +
Sbjct: 199 PTCQIVKCPHPTISNGYLSSGFKRSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTWQPEL 258
Query: 799 PTC 801
P C
Sbjct: 259 PKC 261
Score = 56.6 bits (136), Expect = 1e-08
Identities = 60/250 (24%), Positives = 99/250 (39%), Gaps = 39/250 (15%)
Query: 621 ATYKIGALVKYRCERGYKVE--GEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGFTL 678
A Y IG ++Y C GY+ + G + C TG W+ +CI C +P + NG L
Sbjct: 42 ANYNIGDTIEYLCLPGYRKQKMGPIYAKCTGTG-WT-LFNQCIKRRCPSPRDIDNG--QL 97
Query: 679 TSNATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTCKGNEGHARRLCLENGTWS 738
+G+++ Y C+ Y+L G ++ C T S W+
Sbjct: 98 DIGGVDFGSSITYSCNSGYQLIGESKSYCELGSTGSM--------------------VWN 137
Query: 739 SGLPTCKGCKTPKKSLTRPALSC--LPGKRFYYHRGIFRLQNTQK----VSYTRTCTKRG 792
P C+ K + P++S G +Y G + + + G
Sbjct: 138 PEAPICESVKCQ----SPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIGNSGVLCSGG 193
Query: 793 TWSGHIPTCKAIDCSHPGSIDNGRVII-MNQTTTYNSAVEYHCVPQYQRIGPYLRKCMED 851
WS PTC+ + C HP +I NG + ++ +YN V++ C Y+ G C
Sbjct: 194 EWSDP-PTCQIVKCPHP-TISNGYLSSGFKRSYSYNDNVDFKCKYGYKLSGSSSSTCSPG 251
Query: 852 GSWSGDEPRC 861
+W + P+C
Sbjct: 252 NTWQPELPKC 261
Score = 45.8 bits (108), Expect = 4e-05
Identities = 51/233 (21%), Positives = 86/233 (36%), Gaps = 45/233 (19%)
Query: 443 RRTGSVATYSCEPGFILFGSNVNIDCGRLTAIPYGSISYLNETTYLGSEVLYSCSRNYRL 502
++ G + G+ LF + C I G + GS + YSC+ Y+L
Sbjct: 61 QKMGPIYAKCTGTGWTLFNQCIKRRCPSPRDIDNGQLDI--GGVDFGSSITYSCNSGYQL 118
Query: 503 VGHPRRSC----LESKVWSDTAPKCEGKATKDIKVCSNVAVDRREIRCPEPTLPAHSILS 558
+G + C S VW+ AP CE ++C P P+ S
Sbjct: 119 IGESKSYCELGSTGSMVWNPEAPICE------------------SVKCQSP--PSISNGR 158
Query: 559 VTGNDRLYGRTLIKTADSASSVATYKIGALPTLPAHSILSVTGND----------RLYGR 608
G + Y + SV TY + +L +S + +G + +
Sbjct: 159 HNGYEDFY---------TDGSVVTYSCNSGYSLIGNSGVLCSGGEWSDPPTCQIVKCPHP 209
Query: 609 TLIKTADSASSVATYKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECI 661
T+ S+ +Y V ++C+ GYK+ G STC +W +P+C+
Sbjct: 210 TISNGYLSSGFKRSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTWQPELPKCV 262
Score = 38.9 bits (90), Expect = 0.007
Identities = 25/69 (36%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 794 WSGHIPTCKAIDCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCMEDGS 853
W+ P C+++ C P SI NGR T S V Y C Y IG C G
Sbjct: 136 WNPEAPICESVKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIGNSGVLC-SGGE 194
Query: 854 WSGDEPRCE 862
WS D P C+
Sbjct: 195 WS-DPPTCQ 202
Score = 38.5 bits (89), Expect = 0.011
Identities = 32/125 (25%), Positives = 47/125 (37%), Gaps = 32/125 (25%)
Query: 300 GSTISYACPEGNMLVGSATRTCKEGFWTGVAPTCQYFQLQPMDVPNLVLYLFLSKLFRES 359
GS ++Y+C G L+G++ C G W+ PTCQ + + N +LS F+ S
Sbjct: 169 GSVVTYSCNSGYSLIGNSGVLCSGGEWSD-PPTCQIVKCPHPTISN----GYLSSGFKRS 223
Query: 360 YE-RLNVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGT 418
Y NVD + C Y L G + C G W
Sbjct: 224 YSYNDNVD--------------------------FKCKYGYKLSGSSSSTCSPGNTWQPE 257
Query: 419 EPQCL 423
P+C+
Sbjct: 258 LPKCV 262
Score = 38.1 bits (88), Expect = 0.013
Identities = 38/152 (25%), Positives = 55/152 (36%), Gaps = 41/152 (26%)
Query: 421 QCLFDWCAEPPQISGGIVTTSGRRTGSVATYSCEPGFILFGSNV---------------- 464
QC+ C P I G + G GS TYSC G+ L G +
Sbjct: 80 QCIKRRCPSPRDIDNGQLDIGGVDFGSSITYSCNSGYQLIGESKSYCELGSTGSMVWNPE 139
Query: 465 -----NIDCGRLTAIPYGSISYLNETTYLGSEVLYSCSRNYRLVGHPRRSCLESKVWSDT 519
++ C +I G + + GS V YSC+ Y L+G+ C + WSD
Sbjct: 140 APICESVKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIGNSGVLCSGGE-WSD- 197
Query: 520 APKCEGKATKDIKVCSNVAVDRREIRCPEPTL 551
P C+ ++CP PT+
Sbjct: 198 PPTCQ------------------IVKCPHPTI 211
>gnl|CDD|214480 smart00034, CLECT, C-type lectin (CTL) or carbohydrate-recognition
domain (CRD). Many of these domains function as
calcium-dependent carbohydrate binding modules.
Length = 124
Score = 52.6 bits (126), Expect = 3e-08
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 198 KDRLKTLLVWIGAQKDPGITARTWKWVDGEVVTKPS-WGKDQPNNYNGEQNCVVLDGGRG 256
K+ + WIG + +W+W DG S W +PNN +G +CVVL G
Sbjct: 53 KNSGSSDYYWIGLSDPD--SNGSWQWSDGSGPVSYSNWAPGEPNNSSG--DCVVLS-TSG 107
Query: 257 WLWNDVGCKLDYLHWICQ 274
WNDV C L ++C+
Sbjct: 108 GKWNDVSC-TSKLPFVCE 124
>gnl|CDD|153061 cd03591, CLECT_collectin_like, C-type lectin-like domain (CTLD) of
the type found in human collectins including lung
surfactant proteins A and D, mannose- or mannan binding
lectin (MBL), and CL-L1 (collectin liver 1).
CLECT_collectin_like: C-type lectin-like domain (CTLD)
of the type found in human collectins including lung
surfactant proteins A and D, mannose- or mannan binding
lectin (MBL), and CL-L1 (collectin liver 1). CTLD
refers to a domain homologous to the
carbohydrate-recognition domains (CRDs) of the C-type
lectins. The CTLDs of these collectins bind
carbohydrates on surfaces (e.g. pathogens, allergens,
necrotic, or apoptotic cells) and mediate functions
associated with killing and phagocytosis. MBPs
recognize high mannose oligosaccharides in a calcium
dependent manner, bind to a broad range of pathogens,
and trigger cell killing by activating the complement
pathway. MBP also acts directly as an opsonin. SP-A
and SP-D in addition to functioning as host defense
components, are components of pulmonary surfactant which
play a role in surfactant homeostasis. Pulmonary
surfactant is a phospholipid-protein complex which
reduces the surface tension within the lungs. SP-A
binds the major surfactant lipid:
dipalmitoylphosphatidylcholine (DPPC). SP-D binds two
minor components of surfactant that contain sugar
moieties: glucosylceramide and phosphatidylinositol
(PI). MBP and SP-A, -D monomers are homotrimers with an
N-terminal collagen region and three CTLDs. Multiple
homotrimeric units associate to form supramolecular
complexes. MBL deficiency results in an increased
susceptibility to a large number of different infections
and to inflammatory disease, such as rheumatoid
arthritis.
Length = 114
Score = 50.4 bits (121), Expect = 2e-07
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 215 GITAR----TWKWVDGEVVTKPSWGKDQPNNYNGEQNCVV-LDGGRGWLWNDVGCKLDYL 269
GIT + ++DG +T +W +PNN G ++CV G+ WNDV C
Sbjct: 53 GITDLETEGQFVYLDGGPLTYTNWKPGEPNNAGGGEDCVEMYTSGK---WNDVAC-NLTR 108
Query: 270 HWICQ 274
++C+
Sbjct: 109 LFVCE 113
>gnl|CDD|153059 cd03589, CLECT_CEL-1_like, C-type lectin-like domain (CTLD) of the
type found in CEL-1 from Cucumaria echinata and
Echinoidin from Anthocidaris crassispina.
CLECT_CEL-1_like: C-type lectin-like domain (CTLD) of
the type found in CEL-1 from Cucumaria echinata and
Echinoidin from Anthocidaris crassispina. CTLD refers
to a domain homologous to the carbohydrate-recognition
domains (CRDs) of the C-type lectins. The CEL-1 CTLD
binds three calcium ions and has a high specificity for
N-acteylgalactosamine (GalNAc). CEL-1 exhibits strong
cytotoxicity which is inhibited by GalNAc. This protein
may play a role as a toxin defending against predation.
Echinoidin is found in the coelomic fluid of the sea
urchin and is specific for GalBeta1-3GalNAc. Echinoidin
has a cell adhesive activity towards human cancer cells
which is not mediated through the CTLD. Both CEL-1 and
Echinoidin are multimeric proteins comprised of multiple
dimers linked by disulfide bonds.
Length = 137
Score = 49.3 bits (118), Expect = 6e-07
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 206 VWIGA--QKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVL--DGGRGWLWND 261
+WIG + G ++W DG V W QP+NY G ++CV + G G WND
Sbjct: 69 LWIGLHDRTSEG----PFEWTDGSPVDFTKWAGGQPDNYGGNEDCVQMWRRGDAGQSWND 124
Query: 262 VGCKLDYLHWICQH 275
+ C + +IC+
Sbjct: 125 MPCDAVF-PYICKM 137
>gnl|CDD|165167 PHA02817, PHA02817, EEV Host range protein; Provisional.
Length = 225
Score = 49.9 bits (119), Expect = 2e-06
Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 10/124 (8%)
Query: 373 IEHGTVTLETTRTTHGAVAIYACHEN-----YTLIGETRRVCGDGGKWNGTEPQCLFDWC 427
I++G + + T G+ + C N YTL+GE +C GKWN P C C
Sbjct: 30 IKNGYIYNKKTEYNIGSNVTFFCGNNTRGVRYTLVGEKNIICEKDGKWNKEFPVCKIIRC 89
Query: 428 AEPPQISG---GIVTTSGRRTGSVATYSCEPGFILFGSNVNIDCG-RLTAIPYGSISYLN 483
P +G GI + S ++SC+PGF+L G+ ++ CG + IP I +
Sbjct: 90 RFPALQNGFVNGIPDSKKFYYESEVSFSCKPGFVLIGTKYSV-CGINSSWIPKVPICSRD 148
Query: 484 ETTY 487
TY
Sbjct: 149 NITY 152
Score = 47.2 bits (112), Expect = 9e-06
Identities = 31/95 (32%), Positives = 41/95 (43%), Gaps = 9/95 (9%)
Query: 777 QNTQKVSYTR------TCTKRGTWSGHIPTCKAIDCSHPGSIDNGRV--IIMNQTTTYNS 828
NT+ V YT C K G W+ P CK I C P ++ NG V I ++ Y S
Sbjct: 54 NNTRGVRYTLVGEKNIICEKDGKWNKEFPVCKIIRCRFP-ALQNGFVNGIPDSKKFYYES 112
Query: 829 AVEYHCVPQYQRIGPYLRKCMEDGSWSGDEPRCEK 863
V + C P + IG C + SW P C +
Sbjct: 113 EVSFSCKPGFVLIGTKYSVCGINSSWIPKVPICSR 147
Score = 46.9 bits (111), Expect = 1e-05
Identities = 32/109 (29%), Positives = 45/109 (41%), Gaps = 8/109 (7%)
Query: 623 YKIGALVKYRC---ERG--YKVEGEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGFT 677
Y IG+ V + C RG Y + GE CE G W+ P C + C P + NG
Sbjct: 42 YNIGSNVTFFCGNNTRGVRYTLVGEKNIICEKDGKWNKEFPVCKIIRCRFP-ALQNGFVN 100
Query: 678 --LTSNATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTCKGNE 724
S YY + V + C + L G +C N +W +P C +
Sbjct: 101 GIPDSKKFYYESEVSFSCKPGFVLIGTKYSVCGINSSWIPKVPICSRDN 149
Score = 40.7 bits (95), Expect = 0.002
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 11/70 (15%)
Query: 801 CKAIDCSHPGSIDNGRVIIMNQTTTYN--SAVEYHC------VPQYQRIGPYLRKCMEDG 852
C C +P SI NG I N+ T YN S V + C V Y +G C +DG
Sbjct: 19 CDLNKCCYPPSIKNGY--IYNKKTEYNIGSNVTFFCGNNTRGVR-YTLVGEKNIICEKDG 75
Query: 853 SWSGDEPRCE 862
W+ + P C+
Sbjct: 76 KWNKEFPVCK 85
Score = 30.7 bits (69), Expect = 3.0
Identities = 33/164 (20%), Positives = 56/164 (34%), Gaps = 47/164 (28%)
Query: 660 CIYVDCGNPETVPNGGFTLTSNATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLP- 718
C C P ++ NG G+ V + C N R G+
Sbjct: 19 CDLNKCCYPPSIKNGYIYNKKTEYNIGSNVTFFCGNNTR-----------------GVRY 61
Query: 719 TCKGNEGHARRLCLENGTWSSGLPTCK--GCKTPKKSLTRPALSCLP-GKRFYYHRGIFR 775
T G + +C ++G W+ P CK C+ P +L ++ +P K+FYY
Sbjct: 62 TLVGEK---NIICEKDGKWNKEFPVCKIIRCRFP--ALQNGFVNGIPDSKKFYYE----- 111
Query: 776 LQNTQKVSYT------------RTCTKRGTWSGHIPTCKAIDCS 807
+VS++ C +W +P C + +
Sbjct: 112 ----SEVSFSCKPGFVLIGTKYSVCGINSSWIPKVPICSRDNIT 151
>gnl|CDD|165176 PHA02831, PHA02831, EEV host range protein; Provisional.
Length = 268
Score = 48.8 bits (116), Expect = 4e-06
Identities = 28/102 (27%), Positives = 40/102 (39%), Gaps = 6/102 (5%)
Query: 623 YKIGALVKYRCE----RGYKVEGEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGFTL 678
Y G V Y C+ Y + G C + W P C + C P + NG +
Sbjct: 96 YSFGDSVTYACKVNKLEKYSIVGNETVKCIN-KQWVPKYPVCKLIRCKYP-ALQNGFLNV 153
Query: 679 TSNATYYGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTC 720
YYG V ++C + + L G + C N W G+P C
Sbjct: 154 FEKKFYYGDIVNFKCKKGFILLGSSVSTCDINSIWYPGIPKC 195
Score = 39.6 bits (92), Expect = 0.004
Identities = 44/189 (23%), Positives = 67/189 (35%), Gaps = 41/189 (21%)
Query: 622 TYKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECI-YVDCGNPETVPNGGFTLTS 680
Y+ ++Y+C + + TC + GSWS + CI +C +P T+ NG
Sbjct: 39 VYEENENLEYKCNNNFD---KVFVTC-NNGSWS-TKNMCIGKRNCKDPVTILNGYIKNKK 93
Query: 681 NATYYGTAVLYECD----ENYRLEGHARRLCLENGTWSSGLPTCKGNEGHARRLCLENGT 736
+ +G +V Y C E Y + G+ C+ N
Sbjct: 94 DQYSFGDSVTYACKVNKLEKYSIVGNETVKCI-------------------------NKQ 128
Query: 737 WSSGLPTCK--GCKTPKKSLTRPALSCLPGKRFYYHRGIFRLQNTQKV--SYTRTCTKRG 792
W P CK CK P +L L+ K +Y F+ + + S TC
Sbjct: 129 WVPKYPVCKLIRCKYP--ALQNGFLNVFEKKFYYGDIVNFKCKKGFILLGSSVSTCDINS 186
Query: 793 TWSGHIPTC 801
W IP C
Sbjct: 187 IWYPGIPKC 195
Score = 37.7 bits (87), Expect = 0.020
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 9/103 (8%)
Query: 373 IEHGTVTLETTRTTHGAVAIYACH----ENYTLIGETRRVCGDGGKWNGTEPQCLFDWCA 428
I +G + + + + G YAC E Y+++G C + +W P C C
Sbjct: 84 ILNGYIKNKKDQYSFGDSVTYACKVNKLEKYSIVGNETVKCINK-QWVPKYPVCKLIRC- 141
Query: 429 EPPQISGGIVTTSGRR--TGSVATYSCEPGFILFGSNVNIDCG 469
+ P + G + ++ G + + C+ GFIL GS+V+ C
Sbjct: 142 KYPALQNGFLNVFEKKFYYGDIVNFKCKKGFILLGSSVST-CD 183
Score = 36.5 bits (84), Expect = 0.042
Identities = 31/156 (19%), Positives = 53/156 (33%), Gaps = 43/156 (27%)
Query: 279 NCGSPDRHVNTTFVGTVSTK-----LGSTISYACP----EGNMLVGSATRTCKEGFWTGV 329
NC P +N G + K G +++YAC E +VG+ T C W
Sbjct: 77 NCKDPVTILN----GYIKNKKDQYSFGDSVTYACKVNKLEKYSIVGNETVKCINKQWVPK 132
Query: 330 APTCQYFQLQPMDVPNLVLYLFLSKLFRESYERLNVDCGKLEHIEHGTVTLETTRTTHGA 389
P C+ + + + N L +F K + +G
Sbjct: 133 YPVCKLIRCKYPALQNGFLNVFEKKFY------------------------------YGD 162
Query: 390 VAIYACHENYTLIGETRRVCGDGGKWNGTEPQCLFD 425
+ + C + + L+G + C W P+C+ D
Sbjct: 163 IVNFKCKKGFILLGSSVSTCDINSIWYPGIPKCVKD 198
Score = 34.6 bits (79), Expect = 0.18
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 792 GTWSGHIPTCKAIDCSHPGSIDNGRVIIMNQTTTYNSAVEYHCVPQYQRIGPYLRKCMED 851
W P CK I C +P ++ NG + + + Y V + C + +G + C +
Sbjct: 127 KQWVPKYPVCKLIRCKYP-ALQNGFLNVFEKKFYYGDIVNFKCKKGFILLGSSVSTCDIN 185
Query: 852 GSWSGDEPRCEK 863
W P+C K
Sbjct: 186 SIWYPGIPKCVK 197
Score = 33.8 bits (77), Expect = 0.31
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 626 GALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECIYVDCGNPETVPN 673
G +V ++C++G+ + G +STC+ W +P+C+ D + E PN
Sbjct: 161 GDIVNFKCKKGFILLGSSVSTCDINSIWYPGIPKCVK-DKVHNEIQPN 207
Score = 31.5 bits (71), Expect = 1.9
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 473 AIPYGSISYLNETTYLGSEVLYSCSRNYRLVGHPRRSCLESKVWSDTAPKC 523
A+ G ++ + Y G V + C + + L+G +C + +W PKC
Sbjct: 145 ALQNGFLNVFEKKFYYGDIVNFKCKKGFILLGSSVSTCDINSIWYPGIPKC 195
>gnl|CDD|153064 cd03594, CLECT_REG-1_like, C-type lectin-like domain (CTLD) of the
type found in Human REG-1 (lithostathine), REG-4, and
avian eggshell-specific proteins: ansocalcin,
structhiocalcin-1(SCA-1), and -2(SCA-2).
CLECT_REG-1_like: C-type lectin-like domain (CTLD) of
the type found in Human REG-1 (lithostathine), REG-4,
and avian eggshell-specific proteins: ansocalcin,
structhiocalcin-1(SCA-1), and -2(SCA-2). CTLD refers to
a domain homologous to the carbohydrate-recognition
domains (CRDs) of the C-type lectins. REG-1 is a
proliferating factor which participates in various kinds
of tissue regeneration including pancreatic beta-cell
regeneration, regeneration of intestinal mucosa,
regeneration of motor neurons, and perhaps in tissue
regeneration of damaged heart. REG-1 may play a role on
the pathophysiology of Alzheimer's disease and in the
development of gastric cancers. Its expression is
correlated with reduced survival from early-stage
colorectal cancer. REG-1 also binds and aggregates
several bacterial strains from the intestinal flora and
it has been suggested that it is involved in the control
of the intestinal bacterial ecosystem. Rat
lithostathine has calcium carbonate crystal inhibitor
activity in vitro. REG-IV is unregulated in pancreatic,
gastric, hepatocellular, and prostrate adenocarcinomas.
REG-IV activates the EGF receptor/Akt/AP-1 signaling
pathway in colorectal carcinoma. Ansocalcin, SCA-1 and
-2 are found at high concentration in the calcified egg
shell layer of goose and ostrich, respectively and tend
to form aggregates. Ansocalcin nucleates calcite
crystal aggregates in vitro.
Length = 129
Score = 44.3 bits (105), Expect = 2e-05
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 206 VWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLDGGRGWL-WNDVGC 264
VWIG DP +R W+W DG + SW ++ P Y C L G+L WND C
Sbjct: 64 VWIGLH-DPQ-QSRGWEWSDGSKLDYRSWDRNPP--YARGGYCAELSRSTGFLKWNDANC 119
Query: 265 KLDYLHWICQ 274
+ + +IC+
Sbjct: 120 E-ERNPFICK 128
>gnl|CDD|153068 cd03598, CLECT_EMBP_like, C-type lectin-like domain (CTLD) of the
type found in the human proteins, eosinophil major basic
protein (EMBP) and prepro major basic protein homolog
(MBPH). CLECT_EMBP_like: C-type lectin-like domain
(CTLD) of the type found in the human proteins,
eosinophil major basic protein (EMBP) and prepro major
basic protein homolog (MBPH). CTLD refers to a domain
homologous to the carbohydrate-recognition domains
(CRDs) of the C-type lectins. Eosinophils and basophils
carry out various functions in allergic, parasitic, and
inflammatory diseases. EMBP is stored in eosinophil
crystalloid granules and is released upon degranulation.
EMBP is also expressed in basophils. The proform of
EMBP is expressed in placental X cells and breast tissue
and increases significantly during human pregnancy.
EMBP has cytotoxic properties and damages bacteria and
mammalian cells, in vitro, as well as, helminth
parasites. EMBP deposition has been observed in the
inflamed tissue of allergy patients in a variety of
diseases including asthma, atopic dermatitis, and
rhinitis. In addition to its cytotoxic functions, EMBP
activates cells and stimulates cytokine production.
EMBP has been shown to bind the proteoglycan heparin.
The binding site is similar to the carbohydrate binding
site of other classical CTLD, such as mannose-binding
protein (MBP1), however, heparin binding to EMBP is
calcium ion independent. MBPH has reduced potency in
cytotoxic and cytostimulatory assays compared with EMBP.
Length = 117
Score = 42.4 bits (100), Expect = 1e-04
Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Query: 188 FTTDGELERRKDRLKTLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQN 247
F + ++R L VWIG R + WVDG V W QP N +
Sbjct: 34 FAFNYRVQRLVSTLNQAQVWIGGIITGKGRCRRFSWVDGSVWNYAYWAPGQP--GNRRGH 91
Query: 248 CVVLDGGRGWLWNDVGCKLDYLHWICQH 275
CV L G W CKL +IC +
Sbjct: 92 CVELCTRGGH-WRRAHCKL-RRPFICSY 117
>gnl|CDD|153073 cd03603, CLECT_VCBS, A bacterial subgroup of the C-type lectin-like
(CTLD) domain; a subgroup of bacterial protein domains
homologous to the carbohydrate-recognition domains
(CRDs) of the C-type lectins. CLECT_VCBS: A bacterial
subgroup of the C-type lectin-like (CTLD) domain; a
subgroup of bacterial protein domains homologous to the
carbohydrate-recognition domains (CRDs) of the C-type
lectins. Many CTLDs are calcium-dependent carbohydrate
binding modules; other CTLDs bind protein ligands,
lipids, and inorganic surfaces including CaCO3 and ice.
Bacterial CTLDs within this group are functionally
uncharacterized. Animal C-type lectins are involved in
such functions as extracellular matrix organization,
endocytosis, complement activation, pathogen
recognition, and cell-cell interactions. CTLDs may bind
a variety of carbohydrate ligands including mannose,
N-acetylglucosamine, galactose, N-acetylgalactosamine,
and fucose. CTLDs associate with each other through
several different surfaces to form dimers, trimers, or
tetramers from which ligand-binding sites project in
different orientations. In some CTLDs a loop extends to
the adjoining domain to form a loop-swapped dimer.
Length = 118
Score = 38.9 bits (91), Expect = 0.001
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 13/65 (20%)
Query: 206 VWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQP-------NNYNGEQNCVVLDGGRGWL 258
WIGA T TWKW DGE T +WG +P +Y + + G
Sbjct: 48 SWIGASDAA--TEGTWKWSDGEESTYTNWGSGEPHNNGGGNEDYAAINHFPGISGK---- 101
Query: 259 WNDVG 263
WND+
Sbjct: 102 WNDLA 106
>gnl|CDD|153071 cd03601, CLECT_TC14_like, C-type lectin-like domain (CTLD) of the
type found in lectins TC14, TC14-2, TC14-3, and TC14-4
from the budding tunicate Polyandrocarpa misakiensis and
PfG6 from the Acorn worm. CLECT_TC14_like: C-type
lectin-like domain (CTLD) of the type found in lectins
TC14, TC14-2, TC14-3, and TC14-4 from the budding
tunicate Polyandrocarpa misakiensis and PfG6 from the
Acorn worm. CTLD refers to a domain homologous to the
carbohydrate-recognition domains (CRDs) of the C-type
lectins. TC14 is homodimeric. The CTLD of TC14 binds
D-galactose and D-fucose. TC14 is expressed
constitutively by multipotent epithelial and mesenchymal
cells and plays in role during budding, in inducing the
aggregation of undifferentiated mesenchymal cells to
give rise to epithelial forming tissue. TC14-2 and
TC14-3 shows calcium-dependent galactose binding
activity. TC14-3 is a cytostatic factor which blocks
cell growth and dedifferentiation of the atrial
epithelium during asexual reproduction. It may also act
as a differentiation inducing factor. Galactose
inhibits the cytostatic activity of TC14-3. The gene
for Acorn worm PfG6 is gill-specific; PfG6 may be a
secreted protein.
Length = 119
Score = 38.3 bits (89), Expect = 0.003
Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 191 DGELERRKDRLKTLLV-----WIGAQKDPGITARTWKWVDGEVVTKPS--WGKDQPNNYN 243
+ E R L LV W+GA + + W DG + S W ++P+N
Sbjct: 31 MRDSEMRDAILAFTLVKGHGYWVGAD-NLQDGEYDFLWNDGVSLPTDSDLWAPNEPSNPQ 89
Query: 244 GEQNCVVLDGGRGWLWNDVGC 264
Q CV L L +D C
Sbjct: 90 SRQLCVQLWSKYN-LLDDEYC 109
>gnl|CDD|216100 pfam00754, F5_F8_type_C, F5/8 type C domain. This domain is also
known as the discoidin (DS) domain family.
Length = 128
Score = 38.6 bits (90), Expect = 0.003
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 28 TNQSSTIRGAPSSNANDGELTTVHDGKRCTETQKEVSPWWQVDLLRPYPIRIVRITTRGC 87
+++ S GAP++ A DG +T ++ W QVDL +P I V R
Sbjct: 5 SSEYSGSYGAPAAAAIDGNGST----AWSSKWGDA-PQWLQVDLGKPKKITGVVTQGRQD 59
Query: 88 CGHQPLQDLEIRVGNSTD 105
G+ ++ +I S D
Sbjct: 60 GGNGYVKSYKIEY--SND 75
>gnl|CDD|165263 PHA02954, PHA02954, EEV membrane glycoprotein; Provisional.
Length = 317
Score = 38.9 bits (90), Expect = 0.009
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
Query: 364 NVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGTEPQCL 423
N +C L+ +EHG+ + + G C Y +IG + C WN P C
Sbjct: 127 NAECQPLQ-LEHGSCQPVKEKYSFGEHITINCDVGYEVIGASYISC-TANSWN-VIPSC- 182
Query: 424 FDWCAEPPQISGGIVTTSGRRTGSVATYSCEPGFILFGS 462
+ P +S G+++ S G V SC+ GF L GS
Sbjct: 183 -QQKCDIPSLSNGLISGSTFSIGGVIHLSCKSGFTLTGS 220
Score = 37.0 bits (85), Expect = 0.033
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 619 SVATYKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECI 661
S +T+ IG ++ C+ G+ + G P STC D G W+ +P C+
Sbjct: 197 SGSTFSIGGVIHLSCKSGFTLTGSPSSTCID-GKWNPVLPICV 238
Score = 35.8 bits (82), Expect = 0.089
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 10/104 (9%)
Query: 623 YKIGALVKYRCERGYKVEGEPLSTCEDTGSWSGSVPECIYVDCGNPETVPNGGFTLTSNA 682
Y G + C+ GY+V G +C SW+ +P C C P ++ NG L S +
Sbjct: 147 YSFGEHITINCDVGYEVIGASYISCT-ANSWN-VIPSC-QQKCDIP-SLSNG---LISGS 199
Query: 683 TY-YGTAVLYECDENYRLEGHARRLCLENGTWSSGLPTC-KGNE 724
T+ G + C + L G C++ G W+ LP C + NE
Sbjct: 200 TFSIGGVIHLSCKSGFTLTGSPSSTCID-GKWNPVLPICVRSNE 242
Score = 33.5 bits (76), Expect = 0.49
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 299 LGSTISYACPEGNMLVGSATRTCKEGFWTGVAPTC 333
+G I +C G L GS + TC +G W V P C
Sbjct: 203 IGGVIHLSCKSGFTLTGSPSSTCIDGKWNPVLPIC 237
Score = 32.8 bits (74), Expect = 0.74
Identities = 31/125 (24%), Positives = 44/125 (35%), Gaps = 35/125 (28%)
Query: 299 LGSTISYACPEGNMLVGSATRTCKEGFWTGVAPTCQYFQLQPMDVPNLVLYLFLSKLFRE 358
G I+ C G ++G++ +C W V P+CQ Q D+P+L L F
Sbjct: 149 FGEHITINCDVGYEVIGASYISCTANSWN-VIPSCQ----QKCDIPSLSNGLISGSTF-- 201
Query: 359 SYERLNVDCGKLEHIEHGTVTLETTRTTHGAVAIYACHENYTLIGETRRVCGDGGKWNGT 418
+ G V +C +TL G C D GKWN
Sbjct: 202 ---------------------------SIGGVIHLSCKSGFTLTGSPSSTCID-GKWNPV 233
Query: 419 EPQCL 423
P C+
Sbjct: 234 LPICV 238
Score = 31.6 bits (71), Expect = 1.9
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 446 GSVATYSCEPGFILFGS----------NVNIDCGRLTAIPYGSISYLNETTY-LGSEVLY 494
G T +C+ G+ + G+ NV C + IP S ++ +T+ +G +
Sbjct: 150 GEHITINCDVGYEVIGASYISCTANSWNVIPSCQQKCDIPSLSNGLISGSTFSIGGVIHL 209
Query: 495 SCSRNYRLVGHPRRSCLESKVWSDTAPKC 523
SC + L G P +C++ K W+ P C
Sbjct: 210 SCKSGFTLTGSPSSTCIDGK-WNPVLPIC 237
>gnl|CDD|153058 cd03588, CLECT_CSPGs, C-type lectin-like domain (CTLD) of the type
found in chondroitin sulfate proteoglycan core proteins.
CLECT_CSPGs: C-type lectin-like domain (CTLD) of the
type found in chondroitin sulfate proteoglycan core
proteins (CSPGs) in human and chicken aggrecan, frog
brevican, and zebra fish dermacan. CTLD refers to a
domain homologous to the carbohydrate-recognition
domains (CRDs) of the C-type lectins. In cartilage,
aggrecan forms cartilage link protein stabilized
aggregates with hyaluronan (HA). These aggregates
contribute to the tissue's load bearing properties.
Aggregates having other CSPGs substituting for aggrecan
may contribute to the structural integrity of many
different tissues. Xenopus brevican is expressed in the
notochord and the brain during early embryogenesis.
Zebra fish dermacan is expressed in dermal bones and may
play a role in dermal bone development. CSPGs do
contain LINK domain(s) which bind HA. These LINK
domains are considered by one classification system to
be a variety of CTLD, but are omitted from this
hierarchical classification based on insignificant
sequence similarity.
Length = 124
Score = 35.6 bits (82), Expect = 0.028
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 221 WKWVDGEVVTKPSWGKDQPNNY--NGEQNCVVLDGGRGWLWNDVGC 264
++W DG + +W +QP+N+ GE +CVV+ WNDV C
Sbjct: 69 FRWSDGHPLQFENWRPNQPDNFFATGE-DCVVMIWHEEGEWNDVPC 113
>gnl|CDD|153063 cd03593, CLECT_NK_receptors_like, C-type lectin-like domain (CTLD)
of the type found in natural killer cell receptors
(NKRs). CLECT_NK_receptors_like: C-type lectin-like
domain (CTLD) of the type found in natural killer cell
receptors (NKRs), including proteins similar to oxidized
low density lipoprotein (OxLDL) receptor (LOX-1), CD94,
CD69, NKG2-A and -D, osteoclast inhibitory lectin
(OCIL), dendritic cell-associated C-type lectin-1
(dectin-1), human myeloid inhibitory C-type lectin-like
receptor (MICL), mast cell-associated functional antigen
(MAFA), killer cell lectin-like receptors: subfamily F,
member 1 (KLRF1) and subfamily B, member 1 (KLRB1), and
lys49 receptors. CTLD refers to a domain homologous to
the carbohydrate-recognition domains (CRDs) of the
C-type lectins. NKRs are variously associated with
activation or inhibition of natural killer (NK) cells.
Activating NKRs stimulate cytolysis by NK cells of
virally infected or transformed cells; inhibitory NKRs
block cytolysis upon recognition of markers of healthy
self cells. Most Lys49 receptors are inhibitory; some
are stimulatory. OCIL inhibits NK cell function via
binding to the receptor NKRP1D. Murine OCIL in addition
to inhibiting NK cell function inhibits osteoclast
differentiation. MAFA clusters with the type I Fc
epsilon receptor (FcepsilonRI) and inhibits the mast
cells secretory response to FcepsilonRI stimulus. CD72
is a negative regulator of B cell receptor signaling.
NKG2D is an activating receptor for stress-induced
antigens; human NKG2D ligands include the stress induced
MHC-I homologs, MICA, MICB, and ULBP family of
glycoproteins Several NKRs have a carbohydrate-binding
capacity which is not mediated through calcium ions
(e.g. OCIL binds a range of high molecular weight
sulfated glycosaminoglycans including dextran sulfate,
fucoidan, and gamma-carrageenan sugars). Dectin-1 binds
fungal beta-glucans and in involved in the innate immune
responses to fungal pathogens. MAFA binds saccharides
having terminal alpha-D mannose residues in a
calcium-dependent manner. LOX-1 is the major receptor
for OxLDL in endothelial cells and thought to play a
role in the pathology of atherosclerosis. Some NKRs
exist as homodimers (e.g.Lys49, NKG2D, CD69, LOX-1) and
some as heterodimers (e.g. CD94/NKG2A). Dectin-1 can
function as a monomer in vitro.
Length = 116
Score = 34.6 bits (80), Expect = 0.042
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 10/83 (12%)
Query: 193 ELERRKDRLKTLLVWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLD 252
ELE + ++ + WIG ++ + + WKW+DG + NC L
Sbjct: 44 ELEFLQSQIGSSSYWIGLSREK--SEKPWKWIDGSPLNN----LFNIRGSTKSGNCAYLS 97
Query: 253 GGRGWLWNDVGCKLDYLHWICQH 275
C WIC+
Sbjct: 98 STGI---YSEDCSTKK-RWICEK 116
>gnl|CDD|153072 cd03602, CLECT_1, C-type lectin (CTL)/C-type lectin-like (CTLD)
domain subgroup 1; a subgroup of protein domains
homologous to the carbohydrate-recognition domains
(CRDs) of the C-type lectins. CLECT_1: C-type lectin
(CTL)/C-type lectin-like (CTLD) domain subgroup 1; a
subgroup of protein domains homologous to the
carbohydrate-recognition domains (CRDs) of the C-type
lectins. Many CTLDs are calcium-dependent carbohydrate
binding modules; other CTLDs bind protein ligands,
lipids, and inorganic surfaces including CaCO3 and ice.
Animal C-type lectins are involved in such functions as
extracellular matrix organization, endocytosis,
complement activation, pathogen recognition, and
cell-cell interactions. CTLDs may bind a variety of
carbohydrate ligands including mannose,
N-acetylglucosamine, galactose, N-acetylgalactosamine,
and fucose. CTLDs associate with each other through
several different surfaces to form dimers, trimers, or
tetramers from which ligand-binding sites project in
different orientations. In some CTLDs a loop extends to
the adjoining domain to form a loop-swapped dimer.
Length = 108
Score = 31.6 bits (72), Expect = 0.42
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 12/69 (17%)
Query: 206 VWIGAQKDPGITARTWKWVDGEVVTKPSWGKDQPNNYNGEQNCVVLD-GGRGWLWNDVGC 264
WIG +D +W+W DG + +W QP G+ +C + GR W C
Sbjct: 49 AWIGLYRDVD----SWRWSDGSESSFRNWNTFQP---FGQGDCATMYSSGR---WYAALC 98
Query: 265 KLDYLHWIC 273
+IC
Sbjct: 99 -SALKPFIC 106
>gnl|CDD|235632 PRK05869, PRK05869, enoyl-CoA hydratase; Validated.
Length = 222
Score = 31.3 bits (71), Expect = 1.5
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 554 HSILSVTGNDRLYGRTL-IKTADSASSVATYKIGALPTLPAHSILSVTGNDRLYGRTLIK 612
H I S G+D RTL + AD+A+ V + A+ +P ++ ++TG G TL
Sbjct: 61 HEIFSA-GDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLAL 119
Query: 613 TADSASSVATYKIGA 627
AD S K GA
Sbjct: 120 AADWRVSGDNVKFGA 134
>gnl|CDD|131664 TIGR02615, spoVE, stage V sporulation protein E. This model
represents an exception within the members of the FtsW
model TIGR02614. This exception occurs only in
endospore-forming genera such as Bacillus, Geobacillus,
and Oceanobacillus. Like FtsW, members are found in a
peptidoglycan operon context, but in these genera they
part of a larger set of paralogs (not just the pair FtsW
and RodA) and are required specifically for sporulation,
not for viability [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan,
Cellular processes, Sporulation and germination].
Length = 354
Score = 31.7 bits (72), Expect = 1.6
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 10/56 (17%)
Query: 308 PEGNMLVGSATRTCKEGFWTGVAPTCQYFQLQPMDVPNLVLYLFLSKLFRESYERL 363
P M A R W GV F +QP ++ L ++L+K E E +
Sbjct: 84 PGVGMERNGARR------WIGVGA----FSIQPSEIAKYALIIYLAKSLSEKQEYI 129
>gnl|CDD|202399 pfam02793, HRM, Hormone receptor domain. This extracellular domain
contains four conserved cysteines that probably for
disulphide bridges. The domain is found in a variety of
hormone receptors. It may be a ligand binding domain.
Length = 63
Score = 27.3 bits (61), Expect = 5.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 696 NYRLEGHARRLCLENGTWSSGLP 718
++ G+A R C ENGTWS P
Sbjct: 33 DFDPTGNASRNCTENGTWSEHPP 55
Score = 26.9 bits (60), Expect = 8.8
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 725 GHARRLCLENGTWSSGLP 742
G+A R C ENGTWS P
Sbjct: 38 GNASRNCTENGTWSEHPP 55
>gnl|CDD|180921 PRK07306, PRK07306, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 720
Score = 29.7 bits (67), Expect = 8.1
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 470 RLTAIPYGSISYLNETT 486
RL P GSISY+N+T+
Sbjct: 575 RLAVAPNGSISYINDTS 591
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.437
Gapped
Lambda K H
0.267 0.0615 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 43,350,015
Number of extensions: 4064500
Number of successful extensions: 2537
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2483
Number of HSP's successfully gapped: 88
Length of query: 881
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 776
Effective length of database: 6,280,432
Effective search space: 4873615232
Effective search space used: 4873615232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.3 bits)