BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11956
(126 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 135 bits (341), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 64/85 (75%), Positives = 70/85 (82%)
Query: 1 MSSASAGNRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEH 60
MSS S G RRM+ DVIKLIESKHE T L GL EF VKF+GP+ TPYEGGVWKVRV LP+
Sbjct: 20 MSSPSPGKRRMDTDVIKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDK 79
Query: 61 YPFKSPSIGFMNKMYHPNIDEVSAV 85
YPFKSPSIGFMNK++HPNIDE S
Sbjct: 80 YPFKSPSIGFMNKIFHPNIDEASGT 104
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 48/78 (61%)
Query: 7 GNRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSP 66
NRR +D ++L S + + EF V+F GP TPYE G W + V LP YPFKSP
Sbjct: 13 SNRRREMDYMRLCNSTRKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSP 72
Query: 67 SIGFMNKMYHPNIDEVSA 84
SIGF N++ HPN+DE S
Sbjct: 73 SIGFCNRILHPNVDERSG 90
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 59/111 (53%), Gaps = 12/111 (10%)
Query: 10 RMNIDVIKLIESKHEGTTLKG-LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSI 68
R D KLI + ++ G ++F V F GP T YEGG+WKV V LP+ YPF SPSI
Sbjct: 6 RKQCDFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSI 65
Query: 69 GFMNKMYHPNIDEVSAVF-----------YYGGVWKVRVHLPEHYPFKSPS 108
GFMNK+ HPN+DE S Y V V LP+ + +PS
Sbjct: 66 GFMNKLLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPS 116
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 32/39 (82%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG 125
Y GG+WKV V LP+ YPF SPSIGFMNK+ HPN+DE SG
Sbjct: 43 YEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASG 81
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 37/52 (71%)
Query: 34 FCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
F V GP+D+P+EGG +K+ + LPE YP +P + FM K+YHPN+D++ +
Sbjct: 37 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRI 88
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV 123
+ GG +K+ + LPE YP +P + FM K+YHPN+D++
Sbjct: 49 FEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL 85
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 37/52 (71%)
Query: 34 FCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
F V GP+D+P+EGG +K+ + LPE YP +P + FM K+YHPN+D++ +
Sbjct: 35 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRI 86
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV 123
+ GG +K+ + LPE YP +P + FM K+YHPN+D++
Sbjct: 47 FEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL 83
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The
P1 Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
Length = 155
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 37/52 (71%)
Query: 34 FCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
F V GP+D+P+EGG +K+ + LPE YP +P + FM K+YHPN+D++ +
Sbjct: 38 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRI 89
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV 123
+ GG +K+ + LPE YP +P + FM K+YHPN+D++
Sbjct: 50 FEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL 86
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 37/52 (71%)
Query: 34 FCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
F V GP+D+P+EGG +K+ + LPE YP +P + FM K+YHPN+D++ +
Sbjct: 40 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRI 91
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV 123
+ GG +K+ + LPE YP +P + FM K+YHPN+D++
Sbjct: 52 FEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL 88
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 37/52 (71%)
Query: 34 FCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
F V GP+D+P+EGG +K+ + LPE YP +P + FM K+YHPN+D++ +
Sbjct: 33 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRI 84
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV 123
+ GG +K+ + LPE YP +P + FM K+YHPN+D++
Sbjct: 45 FEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL 81
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 52/87 (59%), Gaps = 4/87 (4%)
Query: 3 SASAGNRRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHLP 58
SA++ +R+ + KL+ G T + L+ F V GP +PYE G++++ ++LP
Sbjct: 2 SAASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLP 61
Query: 59 EHYPFKSPSIGFMNKMYHPNIDEVSAV 85
+ YP ++P + F+ K+YHPNID + +
Sbjct: 62 DDYPMEAPKVRFLTKIYHPNIDRLGRI 88
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 28/37 (75%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV 123
Y G++++ ++LP+ YP ++P + F+ K+YHPNID +
Sbjct: 49 YEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRL 85
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 60.8 bits (146), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 40 GPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
GP D+PY+GGV+ + +H P YPFK P + F ++YHPNI+ ++
Sbjct: 41 GPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86
Score = 48.5 bits (114), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 121
Y GGV+ + +H P YPFK P + F ++YHPNI+
Sbjct: 47 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 81
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 32 KEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
+ F + GP TPYEGG +K+ + LPE YP + P + F+ K+YHPNID++ +
Sbjct: 31 RHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRI 84
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV 123
Y GG +K+ + LPE YP + P + F+ K+YHPNID++
Sbjct: 45 YEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 81
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 9 RRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFK 64
+R+ + KL+ G T + L+ F V GP +PYE G++++ ++LP+ YP +
Sbjct: 6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 65 SPSIGFMNKMYHPNIDEVSAV 85
+P + F+ K+YHPNID + +
Sbjct: 66 APKVRFLTKIYHPNIDRLGRI 86
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 28/37 (75%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV 123
Y G++++ ++LP+ YP ++P + F+ K+YHPNID +
Sbjct: 47 YEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRL 83
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 32 KEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
+ F + GP TPYEGG +K+ + LPE YP + P + F+ K+YHPNID++ +
Sbjct: 31 RHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRI 84
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV 123
Y GG +K+ + LPE YP + P + F+ K+YHPNID++
Sbjct: 45 YEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 81
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 9 RRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFK 64
+R+ + KL+ G T + L+ F V GP +PYE G++++ ++LP+ YP +
Sbjct: 6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 65 SPSIGFMNKMYHPNIDEVSAV 85
+P + F+ K+YHPNID + +
Sbjct: 66 APKVRFLTKIYHPNIDRLGRI 86
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 28/37 (75%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV 123
Y G++++ ++LP+ YP ++P + F+ K+YHPNID +
Sbjct: 47 YEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRL 83
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
GP D+PY GGV+ + +H P YPFK P + F K+YHPNI+ A+
Sbjct: 55 ATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINSQGAI 104
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 121
Y GGV+ + +H P YPFK P + F K+YHPNI+
Sbjct: 65 YSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNIN 99
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 58.5 bits (140), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 33/42 (78%)
Query: 40 GPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 81
GP D+PY+GG++ + VH P YPFK+P + FM K+YHPNI++
Sbjct: 42 GPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINK 83
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
Y GG++ + VH P YPFK+P + FM K+YHPNI++
Sbjct: 48 YQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINK 83
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
GP D+PY+GGV+ + +H P YPFK P + F K+YHPNI+ ++
Sbjct: 40 ATIMGPSDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSI 89
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
Y GGV+ + +H P YPFK P + F K+YHPNI+
Sbjct: 50 YQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINS 85
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 37 KFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVF 86
+ GP DTPYEGG +++ + +PE YPF P + F+ K++HPNI V+
Sbjct: 44 EIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 93
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG 125
Y GG +++ + +PE YPF P + F+ K++HPNI V+G
Sbjct: 53 YEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG 91
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 33 EFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVF 86
E + GP DTPYEGG +++ + +PE YPF P + F+ K++HPNI V+
Sbjct: 55 ELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 108
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG 125
Y GG +++ + +PE YPF P + F+ K++HPNI V+G
Sbjct: 68 YEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG 106
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 33 EFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVF 86
E + GP DTPYEGG +++ + +PE YPF P + F+ K++HPNI V+
Sbjct: 91 ELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 144
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG 125
Y GG +++ + +PE YPF P + F+ K++HPNI V+G
Sbjct: 104 YEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG 142
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 37 KFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVF 86
+ GP DTPYEGG +++ + +PE YPF P + F+ K++HPNI V+
Sbjct: 43 EIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 92
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG 125
Y GG +++ + +PE YPF P + F+ K++HPNI V+G
Sbjct: 52 YEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG 90
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 9 RRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFK 64
+R+ + KL+ G T + L+ F V GP +PYE G++++ ++LP+ YP +
Sbjct: 6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 65 SPSIGFMNKMYHPNIDEVSAV 85
+P + F+ K+YHP ID + +
Sbjct: 66 APKVRFLTKIYHPAIDRLGRI 86
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 27/37 (72%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV 123
Y G++++ ++LP+ YP ++P + F+ K+YHP ID +
Sbjct: 47 YEDGIFELELYLPDDYPMEAPKVRFLTKIYHPAIDRL 83
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 29 KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVF 86
+ E + GP DTPYEGG +++ + +PE YPF P + F+ K++HPNI V+
Sbjct: 38 ENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 95
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG 125
Y GG +++ + +PE YPF P + F+ K++HPNI V+G
Sbjct: 55 YEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG 93
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
GP D+PY+GGV+ + +H P YPFK P + F ++YHPNI+ ++
Sbjct: 45 ATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 94
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
Y GGV+ + +H P YPFK P + F ++YHPNI+
Sbjct: 55 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 90
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
GP D+PY+GGV+ + +H P YPFK P + F ++YHPNI+ ++
Sbjct: 45 ATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 94
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
Y GGV+ + +H P YPFK P + F ++YHPNI+
Sbjct: 55 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 90
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
GP D+PY+GGV+ + +H P YPFK P + F ++YHPNI+ ++
Sbjct: 37 ATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
Y GGV+ + +H P YPFK P + F ++YHPNI+
Sbjct: 47 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 82
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 29/45 (64%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 80
GP D+PY GGV+ + +H P YPFK P I F K+YHPNI+
Sbjct: 36 ASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNIN 80
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 121
Y GGV+ + +H P YPFK P I F K+YHPNI+
Sbjct: 46 YAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNIN 80
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
GP D+PY+GGV+ + +H P YPFK P + F ++YHPNI+ ++
Sbjct: 35 ATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 84
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
Y GGV+ + +H P YPFK P + F ++YHPNI+
Sbjct: 45 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 80
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
GP D+PY+GGV+ + +H P YPFK P + F ++YHPNI+ ++
Sbjct: 38 ATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 87
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
Y GGV+ + +H P YPFK P + F ++YHPNI+
Sbjct: 48 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 83
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b,
Wild-Type
Length = 149
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
GP D+PY+GGV+ + +H P YPFK P + F ++YHPNI+ ++
Sbjct: 37 ATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
Y GGV+ + +H P YPFK P + F ++YHPNI+
Sbjct: 47 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 82
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
GP D+PY+GGV+ + +H P YPFK P + F ++YHPNI+ ++
Sbjct: 37 ATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
Y GGV+ + +H P YPFK P + F ++YHPNI+
Sbjct: 47 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 82
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
GP D+PY+GGV+ + +H P YPFK P + F ++YHPNI+ ++
Sbjct: 40 ATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 89
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
Y GGV+ + +H P YPFK P + F ++YHPNI+
Sbjct: 50 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 85
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
GP D+PY+GGV+ + +H P YPFK P + F ++YHPNI+ ++
Sbjct: 34 ATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 83
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
Y GGV+ + +H P YPFK P + F ++YHPNI+
Sbjct: 44 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 79
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
GP D+PY+GGV+ + +H P YPFK P + F ++YHPNI+ ++
Sbjct: 37 ATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
Y GGV+ + +H P YPFK P + F ++YHPNI+
Sbjct: 47 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 82
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
GP D+PY+GGV+ + +H P YPFK P + F ++YHPNI+ ++
Sbjct: 43 ATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 92
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
Y GGV+ + +H P YPFK P + F ++YHPNI+
Sbjct: 53 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 88
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
GP D+PY+GGV+ + +H P YPFK P + F ++YHPNI+ ++
Sbjct: 37 ATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
Y GGV+ + +H P YPFK P + F ++YHPNI+
Sbjct: 47 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 82
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating
Enzyme Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
GP D+PY+GGV+ + +H P YPFK P + F ++YHPNI+ ++
Sbjct: 35 ATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 84
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
Y GGV+ + +H P YPFK P + F ++YHPNI+
Sbjct: 45 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 80
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
GP D+PY+GGV+ + +H P YPFK P + F ++YHPNI+ ++
Sbjct: 53 ATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 102
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
Y GGV+ + +H P YPFK P + F ++YHPNI+
Sbjct: 63 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 98
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
GP D+PY+GGV+ + +H P YPFK P + F ++YHPNI+ ++
Sbjct: 34 ATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 83
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
Y GGV+ + +H P YPFK P + F ++YHPNI+
Sbjct: 44 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 79
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
GP D+PY+GGV+ + +H P YPFK P + F ++YHPNI+ ++
Sbjct: 53 ATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 102
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
Y GGV+ + +H P YPFK P + F ++YHPNI+
Sbjct: 63 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 98
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 32/47 (68%)
Query: 39 FGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
GP D+PY+GGV+ + +H P YPFK P + F ++YHPNI+ ++
Sbjct: 40 MGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
Y GGV+ + +H P YPFK P + F ++YHPNI+
Sbjct: 47 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 82
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1
(uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And
Atp/mg
Length = 163
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 9 RRMNIDVIKL----IESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFK 64
+R+N ++ L S G L + GP D+PY GGV+ + +H P YPFK
Sbjct: 4 KRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFK 63
Query: 65 SPSIGFMNKMYHPNIDEVSAV 85
P + F ++YHPNI+ ++
Sbjct: 64 PPKVNFTTRIYHPNINSNGSI 84
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
Y GGV+ + +H P YPFK P + F ++YHPNI+
Sbjct: 45 YAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINS 80
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%)
Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
+ + + G +TPYE GV+K+ V +PE YPF+ P I F+ +YHPNID +
Sbjct: 33 MDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRI 87
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 121
Y GV+K+ V +PE YPF+ P I F+ +YHPNID
Sbjct: 48 YEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNID 82
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
GP D+ Y+GGV+ + VH P YPFK P I F K+YHPNI+ ++
Sbjct: 41 ATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSI 90
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 24/36 (66%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
Y GGV+ + VH P YPFK P I F K+YHPNI+
Sbjct: 51 YQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINS 86
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
GP D+ Y+GGV+ + VH P YPFK P I F K+YHPNI+ ++
Sbjct: 37 ATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSI 86
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 24/36 (66%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
Y GGV+ + VH P YPFK P I F K+YHPNI+
Sbjct: 47 YQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINS 82
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between
Ubch5a And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between
Ubch5a And Ubiquitin
Length = 153
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
GP D+ Y+GGV+ + VH P YPFK P I F K+YHPNI+ ++
Sbjct: 41 ATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSI 90
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 24/36 (66%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
Y GGV+ + VH P YPFK P I F K+YHPNI+
Sbjct: 51 YQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINS 86
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 38 FFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
GP D+ Y+GGV+ + VH P YPFK P I F K+YHPNI+ ++
Sbjct: 55 IMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSI 102
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 24/36 (66%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
Y GGV+ + VH P YPFK P I F K+YHPNI+
Sbjct: 63 YQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINS 98
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating
Enzyme, Ubc1
Length = 215
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 38 FFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVF 86
F GP TPYEGG + V + +P YPFK P + F K+YHPNI V+
Sbjct: 39 FLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAI 87
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG 125
Y GG + V + +P YPFK P + F K+YHPNI V+G
Sbjct: 47 YEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTG 85
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 4 ASAGNRRMNIDVIKLIESKHEGT----TLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPE 59
+ RR+ D KL E G T + + FGP++TP+E G +K+ + E
Sbjct: 2 TTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTE 61
Query: 60 HYPFKSPSIGFMNKMYHPNI 79
YP K P++ F++KM+HPN+
Sbjct: 62 EYPNKPPTVKFISKMFHPNV 81
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 120
+ G +K+ + E YP K P++ F++KM+HPN+
Sbjct: 48 FEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNV 81
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 4 ASAGNRRMNIDVIKLIESKHEGT----TLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPE 59
+ RR+ D KL E G T + + FGP++TP+E G +K+ + E
Sbjct: 5 TTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTE 64
Query: 60 HYPFKSPSIGFMNKMYHPNI 79
YP K P++ F++KM+HPN+
Sbjct: 65 EYPNKPPTVKFISKMFHPNV 84
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 120
+ G +K+ + E YP K P++ F++KM+HPN+
Sbjct: 51 FEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNV 84
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 38 FFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVF 86
F GP TPYEGG + V + +P YPFK P + F K+YHPNI V+
Sbjct: 38 FLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAI 86
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG 125
Y GG + V + +P YPFK P + F K+YHPNI V+G
Sbjct: 46 YEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTG 84
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
GP ++PY+GGV+ + +H P YPFK P + F ++YHPNI+ ++
Sbjct: 38 ATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 87
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 121
Y GGV+ + +H P YPFK P + F ++YHPNI+
Sbjct: 48 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 82
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
GP D+PY+GGV+ + +H P YPFK P + F ++YHP I+ ++
Sbjct: 35 ATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPAINSNGSI 84
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
Y GGV+ + +H P YPFK P + F ++YHP I+
Sbjct: 45 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPAINS 80
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 38 FFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 79
FGP DTP++GG +K+ + E YP K P++ F+++M+HPNI
Sbjct: 40 IFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNI 81
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 120
+ GG +K+ + E YP K P++ F+++M+HPNI
Sbjct: 48 WDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNI 81
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin
Ligase, Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin
Ligase, Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 41 PRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
P + PY+ G +++ ++ P YPFK P I F K+YHPNIDE V
Sbjct: 43 PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQV 87
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
Y G +++ ++ P YPFK P I F K+YHPNIDE
Sbjct: 48 YDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE 83
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 4 ASAGNRRMNIDVIKLIESKHEGTT----LKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPE 59
++ RR+ D +L E G + + ++ FGP TP+E G +K+ + E
Sbjct: 2 STPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSE 61
Query: 60 HYPFKSPSIGFMNKMYHPNI 79
YP K P++ F++KM+HPN+
Sbjct: 62 EYPNKPPTVRFLSKMFHPNV 81
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 64 KSPSIGFMNKMYHPNIDEVSAVFY-------YGGVWKVRVHLPEHYPFKSPSIGFMNKMY 116
+ P +G NI + +AV + G +K+ + E YP K P++ F++KM+
Sbjct: 18 EDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMF 77
Query: 117 HPNI 120
HPN+
Sbjct: 78 HPNV 81
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function
In Ubiquitin-Protein Ligases
Length = 154
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 41 PRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
P + PY+ G +++ ++ P YPFK P I F K+YHPNIDE V
Sbjct: 41 PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQV 85
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
Y G +++ ++ P YPFK P I F K+YHPNIDE
Sbjct: 46 YDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE 81
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%)
Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
L + V FGP +T YEGG +K R+ P YP+ P+ F+ KM+HPNI E V
Sbjct: 34 LYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDV 88
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 85 VFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV 123
+Y GG +K R+ P YP+ P+ F+ KM+HPNI E
Sbjct: 47 TYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYET 85
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%)
Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
L + V FGP +T YEGG +K R+ P YP+ P+ F+ KM+HPNI E V
Sbjct: 37 LYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDV 91
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 85 VFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV 123
+Y GG +K R+ P YP+ P+ F+ KM+HPNI E
Sbjct: 50 TYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYET 88
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 4 ASAGNRRMNIDVIKLIESKHEGTTLKGLKE----FCVKFFGPRDTPYEGGVWKVRVHLPE 59
++ RR+ D ++ E G + L + + GP DTPYE G +++ + E
Sbjct: 2 STPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDE 61
Query: 60 HYPFKSPSIGFMNKMYHPNI 79
YP K P + F+++M+HPN+
Sbjct: 62 EYPNKPPHVKFLSEMFHPNV 81
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 120
Y G +++ + E YP K P + F+++M+HPN+
Sbjct: 48 YEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNV 81
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
V GP DT YEGGV+K + P+ YP + P + F+ +++HPN+D+ V
Sbjct: 52 VLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDV 101
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 85 VFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
Y GGV+K + P+ YP + P + F+ +++HPN+D+
Sbjct: 60 TLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDK 97
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 40 GPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 79
GP TPYEGG + + + +P YP+ P I F+ K++HPNI
Sbjct: 61 GPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNI 100
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG 125
Y GG + + + +P YP+ P I F+ K++HPNI +G
Sbjct: 67 YEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTG 105
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 81
V GP DT YEGG +K + P YP K P + F+++++HPNID+
Sbjct: 38 VLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDK 83
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 85 VFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
Y GG +K + P YP K P + F+++++HPNID+
Sbjct: 46 TLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDK 83
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 8 NRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPF 63
++R+ ++ L+ S G T L ++ GP+DT YE +K+ + P YP+
Sbjct: 11 SKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPY 70
Query: 64 KSPSIGFMNKMYHPNIDE 81
K P + F +HPN+D+
Sbjct: 71 KPPVVKFTTPCWHPNVDQ 88
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 78 NIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
+D Y +K+ + P YP+K P + F +HPN+D+
Sbjct: 44 TLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQ 88
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin
Complex
Length = 152
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 24/44 (54%)
Query: 38 FFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 81
P PY + +R+ P YPFK P I F K+YHPN+DE
Sbjct: 37 LLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE 80
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
Y+ + +R+ P YPFK P I F K+YHPN+DE
Sbjct: 45 YHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE 80
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 24/44 (54%)
Query: 38 FFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 81
P PY + +R+ P YPFK P I F K+YHPN+DE
Sbjct: 40 LLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE 83
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
Y+ + +R+ P YPFK P I F K+YHPN+DE
Sbjct: 48 YHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE 83
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 40 GPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVF 86
GP TPYEGG + + + +P YP+ P + F+ K++HPNI +
Sbjct: 83 GPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAI 129
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG 125
Y GG + + + +P YP+ P + F+ K++HPNI +G
Sbjct: 89 YEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTG 127
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 40 GPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 79
GP DTPY GV+ ++ P+ YP P + F + HPNI
Sbjct: 43 GPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNI 82
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 120
Y GV+ ++ P+ YP P + F + HPNI
Sbjct: 49 YADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNI 82
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 79
L + V GP TPY GG++++++ L + +P P F+ K++HPN+
Sbjct: 42 LTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNV 90
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 23/34 (67%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 120
Y GG++++++ L + +P P F+ K++HPN+
Sbjct: 57 YAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNV 90
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 9 RRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFK 64
+R+ +++ L+ S +G + L ++ G T YE +K+ + P YP+
Sbjct: 33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYN 92
Query: 65 SPSIGFMNKMYHPNID 80
+P++ F+ YHPN+D
Sbjct: 93 APTVKFLTPCYHPNVD 108
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 92 WKVRVHLPEHYPFKSPSIGFMNKMYHPNID 121
+K+ + P YP+ +P++ F+ YHPN+D
Sbjct: 79 YKLSLEFPSGYPYNAPTVKFLTPCYHPNVD 108
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 33 EFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 80
E+ GP + YEGGV+ + + YPFK P + F ++YH NI+
Sbjct: 79 EWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNIN 126
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 121
Y GGV+ + + YPFK P + F ++YH NI+
Sbjct: 92 YEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNIN 126
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 40 GPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFM-NKMYHPNI 79
GP DTPYE +++ + +P YP P I FM N + H N+
Sbjct: 56 GPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNV 96
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFM-NKMYHPNIDEVSGE 126
Y +++ + +P YP P I FM N + H N+ +GE
Sbjct: 62 YENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGE 102
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br
Domain Of Gp78 At 1.8-A Resolution
Length = 164
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 33 EFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 79
E+ GP DT +E GV+ + P YP P + F +M+HPNI
Sbjct: 35 EWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 81
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 90 GVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 120
GV+ + P YP P + F +M+HPNI
Sbjct: 51 GVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 81
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 33 EFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
E+ GP + YEGGV+ + + YPFK P + F ++YH NI+ +
Sbjct: 34 EWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVI 86
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
Y GGV+ + + YPFK P + F ++YH NI+
Sbjct: 47 YEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINS 82
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 33 EFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 79
E+ GP DT +E GV+ + P YP P + F +M+HPNI
Sbjct: 41 EWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 87
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 90 GVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 120
GV+ + P YP P + F +M+HPNI
Sbjct: 57 GVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 87
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase
Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase
Gp78
Length = 168
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 33 EFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 79
E+ GP DT +E GV+ + P YP P + F +M+HPNI
Sbjct: 39 EWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 85
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 90 GVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 120
GV+ + P YP P + F +M+HPNI
Sbjct: 55 GVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 85
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 33 EFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 79
E+ GP DT +E GV+ + P YP P + F +M+HPNI
Sbjct: 38 EWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 84
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 90 GVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 120
GV+ + P YP P + F +M+HPNI
Sbjct: 54 GVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 84
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 40 GPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFM-NKMYHPNI 79
GP DTPYE +++ + +P YP P I FM N + H N+
Sbjct: 56 GPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNV 96
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFM-NKMYHPNIDEVSGE 126
Y +++ + +P YP P I FM N + H N+ +GE
Sbjct: 62 YENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGE 102
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 40 GPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFM-NKMYHPNI 79
GP DTPYE +++ + +P YP P I FM N + H N+
Sbjct: 56 GPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNV 96
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFM-NKMYHPNIDEVSGE 126
Y +++ + +P YP P I FM N + H N+ +GE
Sbjct: 62 YENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGE 102
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 14 DVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIG 69
D L E+ ++G T K + E+ V+ G +++ ++G V+++ +H Y + P +
Sbjct: 31 DFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVK 90
Query: 70 FMNKMYHPNID 80
F+ +HPN+D
Sbjct: 91 FITIPFHPNVD 101
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 79 IDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE 126
I+ + + G V+++ +H Y + P + F+ +HPN+D +G+
Sbjct: 59 IEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQ 106
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation
Revealed By A Complex Between Ubiquitin Conjugating
Enzyme Ubc9 And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation
Revealed By A Complex Between Ubiquitin Conjugating
Enzyme Ubc9 And Rangap1
Length = 159
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 40 GPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 79
G + TP+EGG++K+R+ + YP P F ++HPN+
Sbjct: 48 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV 87
Score = 32.0 bits (71), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 62 PFKSPSIGFMNKM-YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 120
P K+P G MN M + I + GG++K+R+ + YP P F ++HPN+
Sbjct: 29 PTKNPD-GTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV 87
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 40 GPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 79
G + TP+EGG++K+R+ + YP P F ++HPN+
Sbjct: 49 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV 88
Score = 32.0 bits (71), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 62 PFKSPSIGFMNKM-YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 120
P K+P G MN M + I + GG++K+R+ + YP P F ++HPN+
Sbjct: 30 PTKNPD-GTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV 88
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 40 GPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 79
G + TP+EGG++K+R+ + YP P F ++HPN+
Sbjct: 49 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV 88
Score = 32.0 bits (71), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 62 PFKSPSIGFMNKM-YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 120
P K+P G MN M + I + GG++K+R+ + YP P F ++HPN+
Sbjct: 30 PTKNPD-GTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV 88
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 40 GPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 79
G + TP+EGG++K+R+ + YP P F ++HPN+
Sbjct: 47 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV 86
Score = 32.0 bits (71), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 62 PFKSPSIGFMNKM-YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 120
P K+P G MN M + I + GG++K+R+ + YP P F ++HPN+
Sbjct: 28 PTKNPD-GTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV 86
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 40 GPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 79
G + TP+EGG++K+R+ + YP P F ++HPN+
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV 89
Score = 32.0 bits (71), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 62 PFKSPSIGFMNKM-YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 120
P K+P G MN M + I + GG++K+R+ + YP P F ++HPN+
Sbjct: 31 PTKNPD-GTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV 89
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 40 GPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 79
G T +EGG++K+ + PE YP + P F ++HPN+
Sbjct: 53 GKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNV 92
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 120
+ GG++K+ + PE YP + P F ++HPN+
Sbjct: 59 WEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNV 92
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 40 GPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 79
G + TP+EGG++K+R+ + YP P F ++HPN+
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV 89
Score = 32.0 bits (71), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 62 PFKSPSIGFMNKM-YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 120
P K+P G MN M + I + GG++K+R+ + YP P F ++HPN+
Sbjct: 31 PTKNPD-GTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV 89
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of
E1 In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 40 GPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 79
G + TP+EGG++K+R+ + YP P F ++HPN+
Sbjct: 47 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV 86
Score = 32.0 bits (71), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 62 PFKSPSIGFMNKM-YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 120
P K+P G MN M + I + GG++K+R+ + YP P F ++HPN+
Sbjct: 28 PTKNPD-GTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV 86
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 40 GPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 79
G + TP+EGG++K+R+ + YP P F ++HPN+
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV 89
Score = 32.0 bits (71), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 62 PFKSPSIGFMNKM-YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 120
P K+P G MN M + I + GG++K+R+ + YP P F ++HPN+
Sbjct: 31 PTKNPD-GTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV 89
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 40 GPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 79
G + TP+EGG++K+R+ + YP P F ++HPN+
Sbjct: 52 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV 91
Score = 32.0 bits (71), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 62 PFKSPSIGFMNKM-YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 120
P K+P G MN M + I + GG++K+R+ + YP P F ++HPN+
Sbjct: 33 PTKNPD-GTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV 91
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 40 GPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 79
G + TP+EGG++K+R+ + YP P F ++HPN+
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV 89
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 62 PFKSPSIGFMNKM-YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 120
P K+P G MN M + I + GG++K+R+ + YP P F ++HPN+
Sbjct: 31 PTKNPD-GTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV 89
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 40 GPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 79
G + TP+EGG++K+R+ + YP P F ++HPN+
Sbjct: 47 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV 86
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 62 PFKSPSIGFMNKM-YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 120
P K+P G MN M + I + GG++K+R+ + YP P F ++HPN+
Sbjct: 28 PTKNPD-GTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV 86
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 40 GPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 79
G + TP+EGG++K+R+ + YP P F ++HP +
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQV 89
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 62 PFKSPSIGFMNKM-YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 120
P K+P G MN M + I + GG++K+R+ + YP P F ++HP +
Sbjct: 31 PTKNPD-GTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQV 89
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 79
L+++ G T + GGV+ + V P YP K P + F YHPN+
Sbjct: 40 LQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNV 88
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 120
+ GGV+ + V P YP K P + F YHPN+
Sbjct: 55 WAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNV 88
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell
Survival And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell
Survival And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell
Survival And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell
Survival And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 79
L+++ G T + GGV+ + V P YP K P + F YHPN+
Sbjct: 38 LQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNV 86
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 120
+ GGV+ + V P YP K P + F YHPN+
Sbjct: 53 WAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNV 86
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2
From Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2
From Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2
From Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2
From Plasmodium Falciparum
Length = 136
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 27/44 (61%)
Query: 30 GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNK 73
++ + V++ G +T Y V+K+++ P++YP K P + F+ K
Sbjct: 48 NIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQK 91
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 85 VFYYGGVWKVRVHLPEHYPFKSPSIGFMNK 114
Y V+K+++ P++YP K P + F+ K
Sbjct: 62 TIYANEVYKIKIIFPDNYPLKPPIVYFLQK 91
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 30 GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNK 73
++ + VK+ G +T Y V+K+++ P+ YP K P + F+ K
Sbjct: 34 NIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQK 77
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 9/77 (11%)
Query: 46 YEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVFYYG--------GVWKVRVH 97
Y G R+ H +P I + HPN + V Y G V+K+++
Sbjct: 2 YNMGNANYRIQKELHNFLNNPPINCTLDV-HPNNIRIWIVKYVGLENTIYANEVYKLKII 60
Query: 98 LPEHYPFKSPSIGFMNK 114
P+ YP K P + F+ K
Sbjct: 61 FPDDYPLKPPIVYFLQK 77
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 40 GPRDTPYEGGVWKVRVHLPEHYPFKSPSI 68
GP TPYEGG + ++ P +PFK PSI
Sbjct: 52 GPEMTPYEGGYYHGKLIFPREFPFKPPSI 80
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers
Specificity To Cullin Modification
Length = 167
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 46 YEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
Y+GG ++ +P+ Y P + + K++HPNI E +
Sbjct: 58 YQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEI 97
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 86 FYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE 126
+Y GG ++ +P+ Y P + + K++HPNI E +GE
Sbjct: 57 YYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITE-TGE 96
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human
Nedd8- Conjugating Enzyme Nce2
Length = 173
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 46 YEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
Y+GG ++ +P+ Y P + + K++HPNI E +
Sbjct: 58 YQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEI 97
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 86 FYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE 126
+Y GG ++ +P+ Y P + + K++HPNI E +GE
Sbjct: 57 YYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITE-TGE 96
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 32.0 bits (71), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGF 70
V GP DTPY G ++ V+ P+ YP P +
Sbjct: 114 VLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNL 148
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVFYYGG 90
L + FG T +E ++ + + ++YP P++ F K+ E+S V G
Sbjct: 54 LSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKI------EMSCVDNCGR 107
Query: 91 VWKVRVHLPEHY 102
V K +H+ +++
Sbjct: 108 VIKNNLHILKNW 119
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVFYYGG 90
L + FG T +E ++ + + ++YP P++ F K+ E+S V G
Sbjct: 58 LSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKI------EMSCVDNCGR 111
Query: 91 VWKVRVHLPEHY 102
V K +H+ +++
Sbjct: 112 VIKNNLHILKNW 123
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 8/85 (9%)
Query: 3 SASAGNRRMNIDVIKLIESKHEGTTLK------GLKEFCVKFFGPRDTPYEGGVWKVRVH 56
S ++ +R+ +++ L G TL + ++ V G T YEG +++
Sbjct: 19 SMASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFK 78
Query: 57 LPEHYPFKSPSIGFM--NKMYHPNI 79
YPF SP + F N HP++
Sbjct: 79 FSSRYPFDSPQVMFTGENIPVHPHV 103
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 86 FYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 121
+Y G + E YP + P + + K++HPNID
Sbjct: 76 YYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNID 111
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 46 YEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 80
Y G + E YP + P + + K++HPNID
Sbjct: 77 YNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNID 111
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVF 86
L + GP T YE ++ ++V YP PS+ F+ K+ I+ S +
Sbjct: 48 LTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 103
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVF 86
L + GP T YE ++ ++V YP PS+ F+ K+ I+ S +
Sbjct: 43 LTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 98
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVF 86
L + GP T YE ++ ++V YP PS+ F+ K+ I+ S +
Sbjct: 37 LTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 92
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVF 86
L + GP T YE ++ ++V YP PS+ F+ K+ I+ S +
Sbjct: 38 LTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 93
>pdb|3DMS|A Chain A, 1.65a Crystal Structure Of Isocitrate Dehydrogenase From
Burkholderia Pseudomallei
Length = 427
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 27 TLKGLKEFCVKFFGPRDTPYEGGVWKVRVHL 57
TL+ LKE+ V GP TP GG+ + V L
Sbjct: 98 TLQVLKEYVVSIKGPLTTPVGGGIRSLNVAL 128
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An
E2-Binding Domain In Nedd8's E1
Length = 160
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 2 SSASAGNRRMNIDVIKLIESKHEGTTLKGLKEFCVKF---FGPRDTPYEGGVWKVRVHLP 58
S ASA R+ D+ +L K + + + F P + Y+ G + +
Sbjct: 2 SXASAAQLRIQKDINELNLPKTCDISFSDPDDL-LNFKLVICPDEGFYKSGKFVFSFKVG 60
Query: 59 EHYPFKSPSIGFMNKMYHPNID 80
+ YP P + +YHPNID
Sbjct: 61 QGYPHDPPKVKCETXVYHPNID 82
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 86 FYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 121
FY G + + + YP P + +YHPNID
Sbjct: 47 FYKSGKFVFSFKVGQGYPHDPPKVKCETXVYHPNID 82
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 34 FCVKFFGPRDTPY--EGGVWKVRVHLPEHYPFKSPSIGFMNKMYHP 77
+ +K P D+ Y G +++ V + YP + P++ F+ +Y P
Sbjct: 52 WILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSP 97
>pdb|2IV0|A Chain A, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
pdb|2IV0|B Chain B, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
Length = 412
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 14 DVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPE 59
D KL + TL +KEF V GP TP GG + V + +
Sbjct: 71 DAYKLYGNYLPDDTLNAIKEFRVALKGPLTTPVGGGYRSLNVTIRQ 116
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 38 FFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID----EVSAVFYYGGVWK 93
GP + +E ++ + + +YP P + F++K+ P ++ EV F+ WK
Sbjct: 46 ILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWK 105
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 38 FFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKM----YHPNIDEVSAVFYYGGVWK 93
GP + +E ++ + + +YP P + F++K+ +P EV F+ WK
Sbjct: 45 ILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWK 104
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 86 FYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 121
FY G + + + YP P + +YHPNID
Sbjct: 67 FYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNID 102
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 41 PRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 80
P + Y+ G + + + YP P + +YHPNID
Sbjct: 63 PDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNID 102
>pdb|1Y7Y|A Chain A, High-Resolution Crystal Structure Of The Restriction-
Modification Controller Protein C.Ahdi From Aeromonas
Hydrophila
pdb|1Y7Y|B Chain B, High-Resolution Crystal Structure Of The Restriction-
Modification Controller Protein C.Ahdi From Aeromonas
Hydrophila
Length = 74
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 14 DVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWK 52
D++K + E T KGL + + F D Y GGV +
Sbjct: 10 DLVKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVER 48
>pdb|1MRZ|A Chain A, Crystal Structure Of A Flavin Binding Protein From
Thermotoga Maritima, Tm379
pdb|1MRZ|B Chain B, Crystal Structure Of A Flavin Binding Protein From
Thermotoga Maritima, Tm379
pdb|1T6X|A Chain A, Crystal Structure Of Adp Bound Tm379
pdb|1T6X|B Chain B, Crystal Structure Of Adp Bound Tm379
pdb|1T6Y|A Chain A, Crystal Structure Of Adp, Amp, And Fmn Bound Tm379
pdb|1T6Y|B Chain B, Crystal Structure Of Adp, Amp, And Fmn Bound Tm379
pdb|1T6Z|A Chain A, Crystal Structure Of Riboflavin Bound Tm379
pdb|1T6Z|B Chain B, Crystal Structure Of Riboflavin Bound Tm379
pdb|1S4M|A Chain A, Crystal Structure Of Flavin Binding To Fad Synthetase From
Thermotoga Maritina
pdb|1S4M|B Chain B, Crystal Structure Of Flavin Binding To Fad Synthetase From
Thermotoga Maritina
Length = 293
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 49 GVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVFY 87
GV+ VRVHLP+ G MN + P + + V Y
Sbjct: 196 GVYLVRVHLPDG----KKKFGVMNVGFRPTVGDARNVKY 230
>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis
Length = 394
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 63 FKSPSIGFMNKMYHPNIDEVSAVFYYGGVWKVRVHL 98
FK+ + M + HPN+ ++ A FY G K V L
Sbjct: 78 FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFL 113
>pdb|2PFT|A Chain A, The Crystal Structure Of Mouse Exo70 Reveals Unique
Features Of The Mammalian Exocyst
Length = 571
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 21/54 (38%)
Query: 13 IDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSP 66
++V I S ++KGLKE K PY + R P P K P
Sbjct: 134 MNVYYQIRSSQLDRSIKGLKEHFRKSSSSSGVPYSPAIPNKRKDTPTKKPIKRP 187
>pdb|2D4V|A Chain A, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|B Chain B, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|C Chain C, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|D Chain D, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
Length = 429
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 27 TLKGLKEFCVKFFGPRDTPYEGGVWKVRVHL 57
T+ ++E+ V GP +TP GG+ + V +
Sbjct: 88 TMAAIREYKVAIKGPLETPVGGGIRSLNVAM 118
>pdb|4AJB|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii) And
Thionadp
pdb|4AJC|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate, Calcium(Ii)
And Adenine Nucleotide Phosphate
pdb|4AJR|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate,
Magnesium(Ii) And Nadph - The Product Complex
pdb|4AJS|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii),
Adenosine 2',5'-Biphosphate And
Ribosylnicotinamide-5'-Phosphate
Length = 416
Score = 25.4 bits (54), Expect = 7.4, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 27 TLKGLKEFCVKFFGPRDTPYEGGVWKVRVHL 57
TL ++E+ V GP TP GG+ + V L
Sbjct: 88 TLDLIREYRVAIMGPLTTPVGGGIRSLNVAL 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,495,402
Number of Sequences: 62578
Number of extensions: 197045
Number of successful extensions: 491
Number of sequences better than 100.0: 127
Number of HSP's better than 100.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 256
Number of HSP's gapped (non-prelim): 240
length of query: 126
length of database: 14,973,337
effective HSP length: 87
effective length of query: 39
effective length of database: 9,529,051
effective search space: 371632989
effective search space used: 371632989
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)