Query psy11956
Match_columns 126
No_of_seqs 126 out of 1386
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 23:15:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11956.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11956hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 8.7E-40 1.9E-44 225.8 5.6 115 1-123 1-123 (153)
2 KOG0419|consensus 100.0 6.2E-39 1.4E-43 212.9 5.0 115 1-124 1-122 (152)
3 KOG0417|consensus 100.0 8.1E-39 1.7E-43 217.2 4.8 108 8-122 3-117 (148)
4 PTZ00390 ubiquitin-conjugating 100.0 4.4E-36 9.5E-41 208.6 6.1 110 7-123 3-119 (152)
5 PLN00172 ubiquitin conjugating 100.0 2.9E-35 6.2E-40 203.5 6.0 109 8-123 3-118 (147)
6 KOG0425|consensus 100.0 6.9E-35 1.5E-39 198.7 7.2 117 1-125 1-138 (171)
7 KOG0418|consensus 100.0 7.3E-34 1.6E-38 198.8 4.0 113 1-122 1-123 (200)
8 KOG0426|consensus 100.0 9.1E-34 2E-38 188.6 4.2 114 1-123 1-135 (165)
9 KOG0424|consensus 100.0 4.6E-32 1E-36 182.5 4.1 114 1-123 1-128 (158)
10 KOG0421|consensus 100.0 1.6E-31 3.5E-36 180.0 3.3 112 5-123 28-146 (175)
11 PF00179 UQ_con: Ubiquitin-con 100.0 5.4E-32 1.2E-36 185.5 0.1 106 10-122 1-115 (140)
12 cd00195 UBCc Ubiquitin-conjuga 100.0 1.4E-30 2.9E-35 178.8 5.0 108 8-122 1-116 (141)
13 smart00212 UBCc Ubiquitin-conj 100.0 1.5E-29 3.2E-34 174.4 5.2 108 9-123 1-117 (145)
14 KOG0422|consensus 99.9 2.3E-28 4.9E-33 163.9 4.6 107 7-121 3-118 (153)
15 KOG0894|consensus 99.9 8.4E-28 1.8E-32 171.6 5.6 105 1-117 1-117 (244)
16 KOG0416|consensus 99.9 4.2E-28 9.1E-33 167.5 2.3 109 6-120 3-116 (189)
17 KOG0427|consensus 99.9 4.3E-27 9.4E-32 156.5 4.4 105 5-116 14-125 (161)
18 KOG0420|consensus 99.9 1.1E-25 2.4E-30 155.7 3.4 111 4-122 26-145 (184)
19 KOG0423|consensus 99.9 1.1E-25 2.5E-30 156.0 2.3 112 5-123 9-127 (223)
20 KOG0428|consensus 99.8 9.4E-22 2E-26 143.2 4.5 102 4-115 9-120 (314)
21 KOG0895|consensus 99.5 7.8E-15 1.7E-19 124.0 1.5 106 9-121 854-975 (1101)
22 KOG0429|consensus 99.3 2.7E-12 5.9E-17 92.6 6.9 79 9-88 22-106 (258)
23 KOG0895|consensus 99.3 2.7E-12 5.9E-17 108.8 7.3 107 5-118 281-405 (1101)
24 KOG0896|consensus 99.2 1E-11 2.2E-16 83.3 4.4 98 5-102 4-114 (138)
25 KOG0417|consensus 98.8 3.3E-09 7.2E-14 72.6 4.2 51 75-126 33-83 (148)
26 COG5078 Ubiquitin-protein liga 98.8 3.7E-09 8E-14 73.4 4.5 51 75-126 38-88 (153)
27 KOG0416|consensus 98.7 7.8E-09 1.7E-13 72.1 3.4 46 81-126 38-83 (189)
28 KOG0419|consensus 98.5 1.5E-07 3.2E-12 63.3 4.3 51 75-126 36-86 (152)
29 PLN00172 ubiquitin conjugating 98.5 1.3E-07 2.8E-12 65.4 3.8 50 75-125 33-82 (147)
30 KOG0420|consensus 98.5 4.2E-07 9.1E-12 63.6 5.5 42 83-125 69-110 (184)
31 KOG0424|consensus 98.4 2.3E-07 5.1E-12 63.2 3.9 53 73-126 39-91 (158)
32 PTZ00390 ubiquitin-conjugating 98.4 2.6E-07 5.6E-12 64.3 3.8 51 75-126 34-84 (152)
33 KOG0418|consensus 98.4 3.8E-07 8.3E-12 64.7 4.0 48 79-126 42-89 (200)
34 PF00179 UQ_con: Ubiquitin-con 98.3 5.1E-07 1.1E-11 61.6 3.3 51 75-126 30-80 (140)
35 KOG0425|consensus 98.3 8.6E-07 1.9E-11 61.2 4.1 43 82-125 45-87 (171)
36 KOG0422|consensus 98.1 3.7E-06 8E-11 57.1 4.1 43 83-126 42-84 (153)
37 smart00212 UBCc Ubiquitin-conj 98.1 3.9E-06 8.5E-11 57.5 3.6 51 75-126 31-81 (145)
38 cd00195 UBCc Ubiquitin-conjuga 98.0 9E-06 2E-10 55.5 4.6 51 75-126 31-81 (141)
39 PF08694 UFC1: Ubiquitin-fold 97.9 8.5E-06 1.9E-10 55.6 2.6 80 5-94 23-120 (161)
40 KOG0421|consensus 97.9 2.3E-05 4.9E-10 53.6 4.5 45 78-122 64-108 (175)
41 KOG0426|consensus 97.8 2.3E-05 5E-10 52.8 3.6 50 75-125 37-86 (165)
42 KOG0897|consensus 97.5 5.7E-06 1.2E-10 54.3 -2.3 59 51-115 13-75 (122)
43 PF14461 Prok-E2_B: Prokaryoti 97.4 0.00022 4.8E-09 48.4 4.3 53 47-100 34-95 (133)
44 KOG3357|consensus 97.3 0.00034 7.5E-09 47.2 4.2 83 6-96 27-125 (167)
45 KOG0423|consensus 97.2 0.00027 5.9E-09 49.8 2.5 48 78-126 45-92 (223)
46 KOG0427|consensus 97.1 0.001 2.2E-08 45.0 4.6 49 75-123 46-95 (161)
47 PF05773 RWD: RWD domain; Int 96.5 0.019 4E-07 36.9 6.8 66 9-74 4-74 (113)
48 PF05743 UEV: UEV domain; Int 96.5 0.00076 1.6E-08 45.2 0.1 66 32-98 29-104 (121)
49 smart00591 RWD domain in RING 94.6 0.23 4.9E-06 31.5 6.5 26 48-73 40-65 (107)
50 KOG0896|consensus 91.2 0.45 9.7E-06 32.4 4.1 44 83-126 49-92 (138)
51 KOG2391|consensus 88.7 0.36 7.9E-06 37.7 2.4 61 38-99 55-125 (365)
52 PF14462 Prok-E2_E: Prokaryoti 88.2 3.5 7.7E-05 27.6 6.6 44 29-73 21-66 (122)
53 KOG0894|consensus 86.5 0.91 2E-05 33.4 3.3 39 75-113 37-75 (244)
54 PF09765 WD-3: WD-repeat regio 85.0 2.3 4.9E-05 32.7 5.0 61 6-72 99-160 (291)
55 KOG0429|consensus 84.0 3.1 6.8E-05 30.8 5.0 41 86-126 61-103 (258)
56 KOG4018|consensus 81.5 8.3 0.00018 28.3 6.5 61 9-70 5-70 (215)
57 KOG0428|consensus 71.2 5.5 0.00012 30.0 3.2 23 92-114 59-81 (314)
58 smart00340 HALZ homeobox assoc 70.9 4 8.8E-05 22.2 1.8 16 6-21 19-34 (44)
59 PF14457 Prok-E2_A: Prokaryoti 67.5 4.8 0.0001 28.3 2.2 49 53-101 57-116 (162)
60 PF14135 DUF4302: Domain of un 56.2 51 0.0011 24.2 6.1 69 6-81 9-101 (235)
61 KOG0309|consensus 54.1 65 0.0014 28.5 6.9 65 7-73 421-491 (1081)
62 KOG4445|consensus 45.3 26 0.00057 27.3 3.1 25 49-73 45-69 (368)
63 cd00421 intradiol_dioxygenase 44.8 35 0.00075 23.2 3.4 25 48-72 65-90 (146)
64 PF14460 Prok-E2_D: Prokaryoti 44.2 12 0.00027 26.3 1.1 22 72-94 90-114 (175)
65 PF06113 BRE: Brain and reprod 43.6 37 0.00079 26.7 3.7 34 45-78 61-95 (333)
66 PF06113 BRE: Brain and reprod 41.6 38 0.00082 26.6 3.5 23 50-72 307-329 (333)
67 cd03457 intradiol_dioxygenase_ 41.5 41 0.00088 24.1 3.4 25 48-72 86-110 (188)
68 PF12065 DUF3545: Protein of u 39.1 21 0.00046 20.8 1.4 11 8-18 36-46 (59)
69 PF00845 Gemini_BL1: Geminivir 35.3 1E+02 0.0022 23.4 4.8 47 29-75 100-154 (276)
70 cd03459 3,4-PCD Protocatechuat 35.2 60 0.0013 22.6 3.4 25 48-72 72-101 (158)
71 TIGR03737 PRTRC_B PRTRC system 33.7 24 0.00051 26.3 1.2 19 72-91 131-152 (228)
72 TIGR03517 GldM_gliding gliding 26.8 1.4E+02 0.0031 25.0 4.8 66 6-71 201-272 (523)
73 PF14532 Sigma54_activ_2: Sigm 24.5 1E+02 0.0022 20.2 3.0 20 4-23 3-22 (138)
74 TIGR02423 protocat_alph protoc 24.4 1.1E+02 0.0024 22.1 3.3 25 48-72 96-125 (193)
75 PF09606 Med15: ARC105 or Med1 22.8 28 0.00061 30.6 0.0 22 52-73 717-738 (799)
76 cd03463 3,4-PCD_alpha Protocat 22.1 1.3E+02 0.0028 21.5 3.3 24 48-71 92-120 (185)
77 PF15572 Imm26: Immunity prote 21.9 98 0.0021 19.9 2.3 27 41-72 7-33 (96)
78 COG2819 Predicted hydrolase of 21.6 1.4E+02 0.0031 22.7 3.5 30 43-72 15-46 (264)
79 KOG1047|consensus 21.1 1E+02 0.0022 26.2 2.9 29 44-73 248-279 (613)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-40 Score=225.76 Aligned_cols=115 Identities=32% Similarity=0.608 Sum_probs=107.5
Q ss_pred CCCchhhhhHHHHHHHHHHhcCCCcccc----c-CcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecc
Q psy11956 1 MSSASAGNRRMNIDVIKLIESKHEGTTL----K-GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMY 75 (126)
Q Consensus 1 Ms~~~~~~~RL~~e~~~l~~~~~~~~~~----~-~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~ 75 (126)
|+++ .|.+||++|+++|++++..++.+ + |++.|++.|.||++||||||.|++.|.||++||++||+|+|.++||
T Consensus 1 ~~s~-~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~ 79 (153)
T COG5078 1 MSSP-SALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIF 79 (153)
T ss_pred CCch-hHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCc
Confidence 4532 39999999999999999888887 3 9999999999999999999999999999999999999999999999
Q ss_pred ccccccccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956 76 HPNIDEVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV 123 (126)
Q Consensus 76 Hpnv~~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~ 123 (126)
||||+ .+|+||+ .+.|+|++++++|| ++++++|..||.++.
T Consensus 80 HPNV~-~~G~vCLdIL~~~WsP~~~l~sIL------lsl~slL~~PN~~~P 123 (153)
T COG5078 80 HPNVD-PSGNVCLDILKDRWSPVYTLETIL------LSLQSLLLSPNPDSP 123 (153)
T ss_pred CCCcC-CCCCChhHHHhCCCCccccHHHHH------HHHHHHHcCCCCCCC
Confidence 99999 6999999 89999999999998 999999999998763
No 2
>KOG0419|consensus
Probab=100.00 E-value=6.2e-39 Score=212.91 Aligned_cols=115 Identities=29% Similarity=0.592 Sum_probs=110.1
Q ss_pred CCCchhhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccc
Q psy11956 1 MSSASAGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYH 76 (126)
Q Consensus 1 Ms~~~~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~H 76 (126)
|| ++|.|||++|+++|++++..|+++ +|++.|.++|+||.+|||+||+|++.|.|+++||.+||.|+|.+++||
T Consensus 1 Ms--tpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFH 78 (152)
T KOG0419|consen 1 MS--TPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFH 78 (152)
T ss_pred CC--chHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccC
Confidence 78 789999999999999999999987 899999999999999999999999999999999999999999999999
Q ss_pred cccccccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCC
Q psy11956 77 PNIDEVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVS 124 (126)
Q Consensus 77 pnv~~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~ 124 (126)
|||| ++|.+|+ ...|+|.+++..|| .+++++|.+||.++..
T Consensus 79 PNvy-a~G~iClDiLqNrWsp~Ydva~IL------tsiQslL~dPn~~sPa 122 (152)
T KOG0419|consen 79 PNVY-ADGSICLDILQNRWSPTYDVASIL------TSIQSLLNDPNPNSPA 122 (152)
T ss_pred CCcC-CCCcchHHHHhcCCCCchhHHHHH------HHHHHHhcCCCCCCcc
Confidence 9999 5899999 78999999999998 9999999999988743
No 3
>KOG0417|consensus
Probab=100.00 E-value=8.1e-39 Score=217.16 Aligned_cols=108 Identities=30% Similarity=0.681 Sum_probs=103.5
Q ss_pred hhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecccccccccc
Q psy11956 8 NRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVS 83 (126)
Q Consensus 8 ~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~~ 83 (126)
.+||.+|+++|++++..++.+ +|++.|+++|.||.+||||||+|++.|.||++||++||+|+|.|+||||||+ ..
T Consensus 3 ~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~-~~ 81 (148)
T KOG0417|consen 3 SKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNID-SN 81 (148)
T ss_pred HHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcC-cc
Confidence 569999999999999999886 7899999999999999999999999999999999999999999999999999 59
Q ss_pred ceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCC
Q psy11956 84 AVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122 (126)
Q Consensus 84 g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~ 122 (126)
|.||+ +..|+|+++++++| .+++++|-+||.|+
T Consensus 82 G~IclDILk~~WsPAl~i~~Vl------lsI~sLL~~Pnpdd 117 (148)
T KOG0417|consen 82 GRICLDILKDQWSPALTISKVL------LSICSLLSDPNPDD 117 (148)
T ss_pred ccchHHhhhccCChhhHHHHHH------HHHHHHhcCCCCCc
Confidence 99999 78899999999998 99999999999986
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=4.4e-36 Score=208.57 Aligned_cols=110 Identities=27% Similarity=0.592 Sum_probs=104.3
Q ss_pred hhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccccccc
Q psy11956 7 GNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV 82 (126)
Q Consensus 7 ~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~ 82 (126)
+++||++|+++|++++..++.+ +|+..|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+.
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~- 81 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK- 81 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECC-
Confidence 6899999999999998888876 78999999999999999999999999999999999999999999999999995
Q ss_pred cceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956 83 SAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV 123 (126)
Q Consensus 83 ~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~ 123 (126)
+|.||+ .+.|+|+++++++| ++++++|..||.++.
T Consensus 82 ~G~iCl~iL~~~W~p~~ti~~iL------~~i~~ll~~P~~~~p 119 (152)
T PTZ00390 82 LGRICLDILKDKWSPALQIRTVL------LSIQALLSAPEPDDP 119 (152)
T ss_pred CCeEECccCcccCCCCCcHHHHH------HHHHHHHhCCCCCCc
Confidence 999999 68999999999997 999999999998763
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=2.9e-35 Score=203.54 Aligned_cols=109 Identities=26% Similarity=0.608 Sum_probs=102.8
Q ss_pred hhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecccccccccc
Q psy11956 8 NRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVS 83 (126)
Q Consensus 8 ~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~~ 83 (126)
.+||++|+++|++++..++.+ +|+.+|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||+. +
T Consensus 3 ~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~-~ 81 (147)
T PLN00172 3 TKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINS-N 81 (147)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECC-C
Confidence 699999999999998888765 78999999999999999999999999999999999999999999999999995 9
Q ss_pred ceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956 84 AVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV 123 (126)
Q Consensus 84 g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~ 123 (126)
|.||+ .+.|+|+++++++| ++++++|..||.++.
T Consensus 82 G~iCl~il~~~W~p~~ti~~il------~~i~~ll~~P~~~~p 118 (147)
T PLN00172 82 GSICLDILRDQWSPALTVSKVL------LSISSLLTDPNPDDP 118 (147)
T ss_pred CEEEcccCcCCCCCcCcHHHHH------HHHHHHHhCCCCCCc
Confidence 99999 68999999999997 999999999998863
No 6
>KOG0425|consensus
Probab=100.00 E-value=6.9e-35 Score=198.66 Aligned_cols=117 Identities=27% Similarity=0.511 Sum_probs=107.9
Q ss_pred CCCchhhhhHHHHHHHHHHhcCCCcccc-----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecc
Q psy11956 1 MSSASAGNRRMNIDVIKLIESKHEGTTL-----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMY 75 (126)
Q Consensus 1 Ms~~~~~~~RL~~e~~~l~~~~~~~~~~-----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~ 75 (126)
|++ +.+..-|+++|++|++.+.+++.+ +|+++|.|.|+||.+|+|+||.|+..+.||++||.+||+++|.+++|
T Consensus 1 m~~-~~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mw 79 (171)
T KOG0425|consen 1 MTS-SQASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMW 79 (171)
T ss_pred Ccc-chhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhc
Confidence 443 447788999999999999999886 69999999999999999999999999999999999999999999999
Q ss_pred ccccccccceeee----------------CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCC
Q psy11956 76 HPNIDEVSAVFYY----------------GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG 125 (126)
Q Consensus 76 Hpnv~~~~g~ic~----------------~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g 125 (126)
||||+. +|.+|. .+.|.|..++++|+ ++++++|..||.++..+
T Consensus 80 HPNvy~-~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIl------lSiIsmL~~PN~~SPAN 138 (171)
T KOG0425|consen 80 HPNVYE-DGDVCISILHPPGDDPSGYELPSERWLPVQTVETIL------LSIISMLNSPNDESPAN 138 (171)
T ss_pred CCCcCC-CCCEEEEeecCCCCCcccCCChhhccCCccchhHhH------HHHHHHHcCCCCCCccc
Confidence 999995 999999 46899999999997 99999999999987654
No 7
>KOG0418|consensus
Probab=100.00 E-value=7.3e-34 Score=198.77 Aligned_cols=113 Identities=30% Similarity=0.668 Sum_probs=104.0
Q ss_pred CCCchhhhhHHHHHHHHHHhcC---CCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeee
Q psy11956 1 MSSASAGNRRMNIDVIKLIESK---HEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNK 73 (126)
Q Consensus 1 Ms~~~~~~~RL~~e~~~l~~~~---~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~ 73 (126)
|| . +.+||++|.+++.+++ ..++.. +|+.+....|.||++||||||+|.++|++|++|||+||+|+|.|+
T Consensus 1 m~--~-~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~Tk 77 (200)
T KOG0418|consen 1 MS--N-AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITK 77 (200)
T ss_pred Cc--c-HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeee
Confidence 66 5 8999999999998877 344443 688999999999999999999999999999999999999999999
Q ss_pred ccccccccccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCC
Q psy11956 74 MYHPNIDEVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122 (126)
Q Consensus 74 i~Hpnv~~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~ 122 (126)
||||||+..+|.||+ .+.|.+++|++++| ++++++|..|+.++
T Consensus 78 IwHPnVSs~tGaICLDilkd~Wa~slTlrtvL------islQalL~~pEp~d 123 (200)
T KOG0418|consen 78 IWHPNVSSQTGAICLDILKDQWAASLTLRTVL------ISLQALLCAPEPKD 123 (200)
T ss_pred eecCCCCcccccchhhhhhcccchhhhHHHHH------HHHHHHHcCCCCCC
Confidence 999999999999999 79999999999998 99999999888765
No 8
>KOG0426|consensus
Probab=100.00 E-value=9.1e-34 Score=188.55 Aligned_cols=114 Identities=25% Similarity=0.461 Sum_probs=107.6
Q ss_pred CCCchhhhhHHHHHHHHHHhcCCCcccc-----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecc
Q psy11956 1 MSSASAGNRRMNIDVIKLIESKHEGTTL-----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMY 75 (126)
Q Consensus 1 Ms~~~~~~~RL~~e~~~l~~~~~~~~~~-----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~ 75 (126)
|+ ..|+|||++||++|..++++|+.+ +|+++|.+.|.||++|+|+||.|..++.||++||.+||+++|.-.+|
T Consensus 1 m~--~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~f 78 (165)
T KOG0426|consen 1 MA--GTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMF 78 (165)
T ss_pred Cc--hhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccc
Confidence 56 689999999999999999999987 78999999999999999999999999999999999999999999999
Q ss_pred ccccccccceeee----------------CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956 76 HPNIDEVSAVFYY----------------GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV 123 (126)
Q Consensus 76 Hpnv~~~~g~ic~----------------~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~ 123 (126)
||||+ ++|++|. .+.|+|..+++.|| ++..+++.+||.++-
T Consensus 79 HPNiy-~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKIL------LSV~SMLaEPNdESg 135 (165)
T KOG0426|consen 79 HPNIY-PDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKIL------LSVVSMLAEPNDESG 135 (165)
T ss_pred cCccc-CCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHH------HHHHHHHcCCCcccC
Confidence 99999 5999999 36899999999998 999999999998764
No 9
>KOG0424|consensus
Probab=99.97 E-value=4.6e-32 Score=182.48 Aligned_cols=114 Identities=25% Similarity=0.463 Sum_probs=106.3
Q ss_pred CCCchhhhhHHHHHHHHHHhcCCCcccc---------cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEe
Q psy11956 1 MSSASAGNRRMNIDVIKLIESKHEGTTL---------KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFM 71 (126)
Q Consensus 1 Ms~~~~~~~RL~~e~~~l~~~~~~~~~~---------~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~ 71 (126)
|| +-++.||+.|-+.+.++..-|+.+ .|++.|++.|.|+++|+||||.|.+.+.||++||.+||+++|.
T Consensus 1 ~s--~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~ 78 (158)
T KOG0424|consen 1 MS--GIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFK 78 (158)
T ss_pred Cc--chHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccC
Confidence 67 568999999999999999988876 5788999999999999999999999999999999999999999
Q ss_pred eeccccccccccceeee-----CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956 72 NKMYHPNIDEVSAVFYY-----GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV 123 (126)
Q Consensus 72 t~i~Hpnv~~~~g~ic~-----~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~ 123 (126)
++.|||||| ++|+||| ..+|+|++++..|| ++++.+|.+||+.+.
T Consensus 79 ~pl~HPNVy-psgtVcLsiL~e~~~W~paitikqiL------~gIqdLL~~Pn~~~p 128 (158)
T KOG0424|consen 79 PPLFHPNVY-PSGTVCLSILNEEKDWRPAITIKQIL------LGIQDLLDTPNITSP 128 (158)
T ss_pred CCCcCCCcC-CCCcEehhhhccccCCCchhhHHHHH------HHHHHHhcCCCCCCc
Confidence 999999999 5999999 34599999999998 999999999999764
No 10
>KOG0421|consensus
Probab=99.97 E-value=1.6e-31 Score=180.04 Aligned_cols=112 Identities=24% Similarity=0.517 Sum_probs=106.3
Q ss_pred hhhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccccc
Q psy11956 5 SAGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 80 (126)
Q Consensus 5 ~~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~ 80 (126)
....|||++||..|+....+|+++ +|++.|..+|.||++|+|+|..|++.+.||.+||+.||+|+|.+++||||||
T Consensus 28 ~~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD 107 (175)
T KOG0421|consen 28 HSVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVD 107 (175)
T ss_pred chHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCcc
Confidence 356799999999999999999987 8999999999999999999999999999999999999999999999999999
Q ss_pred cccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956 81 EVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV 123 (126)
Q Consensus 81 ~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~ 123 (126)
. .|.||+ .+.|+..+++++|| +++++++=+||..+.
T Consensus 108 ~-~GnIcLDILkdKWSa~YdVrTIL------LSiQSLLGEPNn~SP 146 (175)
T KOG0421|consen 108 L-SGNICLDILKDKWSAVYDVRTIL------LSIQSLLGEPNNSSP 146 (175)
T ss_pred c-cccchHHHHHHHHHHHHhHHHHH------HHHHHHhCCCCCCCc
Confidence 5 999999 89999999999998 999999999998763
No 11
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=99.97 E-value=5.4e-32 Score=185.49 Aligned_cols=106 Identities=29% Similarity=0.675 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhcCCCcccc----c-CcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccccccccc
Q psy11956 10 RMNIDVIKLIESKHEGTTL----K-GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSA 84 (126)
Q Consensus 10 RL~~e~~~l~~~~~~~~~~----~-~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~~g 84 (126)
||++|++++++++..++.+ + |+..|+++|.||++|+|+||.|+++|.||++||++||+|+|.|++|||||+ .+|
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~-~~G 79 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNID-ENG 79 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB--TTS
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccc-ccc
Confidence 8999999999999999876 3 899999999999999999999999999999999999999999999999999 699
Q ss_pred eeee----CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCC
Q psy11956 85 VFYY----GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122 (126)
Q Consensus 85 ~ic~----~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~ 122 (126)
++|+ .+.|+|++++.++| .+++++|.+|+.+.
T Consensus 80 ~icl~~l~~~~W~p~~~i~~il------~~i~~ll~~p~~~~ 115 (140)
T PF00179_consen 80 RICLDILNPESWSPSYTIESIL------LSIQSLLSEPNPED 115 (140)
T ss_dssp BBGHGGGTTTTC-TTSHHHHHH------HHHHHHHHSTCTTS
T ss_pred cchhhhhhcccCCcccccccHH------HHHHHHHhCCCCCC
Confidence 9999 34699999999997 89999999887665
No 12
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=99.96 E-value=1.4e-30 Score=178.80 Aligned_cols=108 Identities=31% Similarity=0.655 Sum_probs=99.6
Q ss_pred hhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecccccccccc
Q psy11956 8 NRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVS 83 (126)
Q Consensus 8 ~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~~ 83 (126)
.|||++|++++++++..++.+ +|+..|+++|.||++|+|+||.|++.|.||++||++||+|+|.++++||||+ .+
T Consensus 1 ~~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~-~~ 79 (141)
T cd00195 1 SKRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVD-EN 79 (141)
T ss_pred CchHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCC-CC
Confidence 379999999999998888765 6999999999999999999999999999999999999999999999999999 59
Q ss_pred ceeee---Cce-eeEEEEeCCCCCCCCCeeeeeccCCCCCCCC
Q psy11956 84 AVFYY---GGV-WKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122 (126)
Q Consensus 84 g~ic~---~~~-w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~ 122 (126)
|.+|+ ... |+|++++.+++ .++++.|..|+.+.
T Consensus 80 G~icl~~l~~~~W~p~~~l~~il------~~i~~~l~~p~~~~ 116 (141)
T cd00195 80 GKICLSILKTHGWSPAYTLRTVL------LSLQSLLNEPNPSD 116 (141)
T ss_pred CCCchhhcCCCCcCCcCcHHHHH------HHHHHHHhCCCCCC
Confidence 99999 344 99999999997 99999999888754
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=99.96 E-value=1.5e-29 Score=174.39 Aligned_cols=108 Identities=31% Similarity=0.656 Sum_probs=99.9
Q ss_pred hHHHHHHHHHHhcCCCcccc----c-CcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecccccccccc
Q psy11956 9 RRMNIDVIKLIESKHEGTTL----K-GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVS 83 (126)
Q Consensus 9 ~RL~~e~~~l~~~~~~~~~~----~-~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~~ 83 (126)
+||++|++++++++..++.+ + |+..|+++|.||++|+|+||.|++.|.||++||++||+|+|.++++||||+. +
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~-~ 79 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDS-S 79 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECC-C
Confidence 69999999999998888764 3 8999999999999999999999999999999999999999999999999995 9
Q ss_pred ceeee---C-ceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956 84 AVFYY---G-GVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV 123 (126)
Q Consensus 84 g~ic~---~-~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~ 123 (126)
|.+|+ . +.|+|++++.+++ .+++++|.+|+.++.
T Consensus 80 G~icl~~l~~~~W~p~~~l~~il------~~i~~~l~~p~~~~~ 117 (145)
T smart00212 80 GEICLDILKQEKWSPATTLETVL------LSIQSLLSEPNPDSP 117 (145)
T ss_pred CCEehhhcCCCCCCCCCcHHHHH------HHHHHHHhCCCCCCc
Confidence 99999 4 7999999999997 899999989887753
No 14
>KOG0422|consensus
Probab=99.95 E-value=2.3e-28 Score=163.90 Aligned_cols=107 Identities=25% Similarity=0.531 Sum_probs=98.8
Q ss_pred hhhHHHHHHHHHHhcCCCcccc-----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecccccccc
Q psy11956 7 GNRRMNIDVIKLIESKHEGTTL-----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 81 (126)
Q Consensus 7 ~~~RL~~e~~~l~~~~~~~~~~-----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~ 81 (126)
|.+||++|+..|++++...+.. .|+..|++.|. |++-||..|.|+++|.||.+|||+||++.|.|+|||||||+
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe 81 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDE 81 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCC
Confidence 7899999999999987765432 78899999999 99999999999999999999999999999999999999996
Q ss_pred ccceeee----CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCC
Q psy11956 82 VSAVFYY----GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 121 (126)
Q Consensus 82 ~~g~ic~----~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~ 121 (126)
.|.+|+ .+.|+|+.+.+.++ .++++++..|++.
T Consensus 82 -~gqvClPiis~EnWkP~T~teqVl------qaLi~liN~P~pe 118 (153)
T KOG0422|consen 82 -KGQVCLPIISAENWKPATRTEQVL------QALIALINDPEPE 118 (153)
T ss_pred -CCceeeeeeecccccCcccHHHHH------HHHHHHhcCCCcc
Confidence 799999 79999999999997 8999999998875
No 15
>KOG0894|consensus
Probab=99.94 E-value=8.4e-28 Score=171.56 Aligned_cols=105 Identities=23% Similarity=0.444 Sum_probs=95.1
Q ss_pred CCCchhhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeec--
Q psy11956 1 MSSASAGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKM-- 74 (126)
Q Consensus 1 Ms~~~~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i-- 74 (126)
|++ .+|.+||++||+.|++++++++.+ +|+.+||.+|.||++|||+||.|+..|.||.+||++||.|+++|+-
T Consensus 1 ma~-k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGR 79 (244)
T KOG0894|consen 1 MAS-KAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGR 79 (244)
T ss_pred Ccc-hHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCc
Confidence 454 689999999999999999999987 8999999999999999999999999999999999999999999953
Q ss_pred cccccccccceeee------CceeeEEEEeCCCCCCCCCeeeeeccCCC
Q psy11956 75 YHPNIDEVSAVFYY------GGVWKVRVHLPEHYPFKSPSIGFMNKMYH 117 (126)
Q Consensus 75 ~Hpnv~~~~g~ic~------~~~w~p~~~~~~ilp~~~p~~~~~~~l~~ 117 (126)
|.+ +-++|+ ++.|+|.++|++|| .++++.|.+
T Consensus 80 Fkt-----ntRLCLSiSDfHPdsWNP~WsVStIL------tGLlSFM~e 117 (244)
T KOG0894|consen 80 FKT-----NTRLCLSISDFHPDSWNPGWSVSTIL------TGLLSFMTE 117 (244)
T ss_pred eec-----CceEEEeccccCcCcCCCcccHHHHH------HHHHHHHhc
Confidence 443 468999 89999999999997 888887754
No 16
>KOG0416|consensus
Probab=99.94 E-value=4.2e-28 Score=167.48 Aligned_cols=109 Identities=51% Similarity=0.956 Sum_probs=95.2
Q ss_pred hhhhHHHHHHHHHHhcCCCcccc-cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccccccccc
Q psy11956 6 AGNRRMNIDVIKLIESKHEGTTL-KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSA 84 (126)
Q Consensus 6 ~~~~RL~~e~~~l~~~~~~~~~~-~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~~g 84 (126)
.+.||+..|+..|.....+-... +++.+++|.+.||++|||+||+|++++.+|++||++.|.|.|.++||||||+..+|
T Consensus 3 ~~~rRid~Dv~KL~~s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SG 82 (189)
T KOG0416|consen 3 SGKRRIDTDVMKLLMSDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASG 82 (189)
T ss_pred CcccchhhHHHHHHhcCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccC
Confidence 46899999999998765554444 55999999999999999999999999999999999999999999999999999999
Q ss_pred eeee---CceeeEEEEeCCCCCCCCCeeeeec-cCCCCCC
Q psy11956 85 VFYY---GGVWKVRVHLPEHYPFKSPSIGFMN-KMYHPNI 120 (126)
Q Consensus 85 ~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~-~l~~pn~ 120 (126)
.||+ ...|+|.+.+..|| -.|+. +|-.||.
T Consensus 83 sVCLDViNQtWSp~yDL~NIf------etfLPQLL~YPNp 116 (189)
T KOG0416|consen 83 SVCLDVINQTWSPLYDLVNIF------ETFLPQLLRYPNP 116 (189)
T ss_pred ccHHHHHhhhhhHHHHHHHHH------HHHhHHHhcCCCC
Confidence 9999 78999999999887 44444 4557774
No 17
>KOG0427|consensus
Probab=99.93 E-value=4.3e-27 Score=156.45 Aligned_cols=105 Identities=18% Similarity=0.428 Sum_probs=98.3
Q ss_pred hhhhhHHHHHHHHHHhcCCCcccc---cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeec-cccccc
Q psy11956 5 SAGNRRMNIDVIKLIESKHEGTTL---KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKM-YHPNID 80 (126)
Q Consensus 5 ~~~~~RL~~e~~~l~~~~~~~~~~---~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i-~Hpnv~ 80 (126)
..|.+||++|+.++|.+++.|+.. +|+..|++.+.|.+||.|+|..|++.++||+.||++.|+|.|..++ .||+|+
T Consensus 14 ~~at~RLqKEl~e~q~~pP~G~~~~v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiY 93 (161)
T KOG0427|consen 14 KIATNRLQKELSEWQNNPPTGFKHRVTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIY 93 (161)
T ss_pred HHHHHHHHHHHHHHhcCCCCcceeecccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCcee
Confidence 468899999999999999999875 8999999999999999999999999999999999999999999987 899999
Q ss_pred cccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCC
Q psy11956 81 EVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMY 116 (126)
Q Consensus 81 ~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~ 116 (126)
.+|-||+ -+.|+|++++.++. ++++++|.
T Consensus 94 -SNGHICL~iL~d~WsPAmsv~SvC------lSIlSMLS 125 (161)
T KOG0427|consen 94 -SNGHICLDILYDSWSPAMSVQSVC------LSILSMLS 125 (161)
T ss_pred -cCCeEEEEeecccCCcchhhHHHH------HHHHHHHc
Confidence 4999999 79999999999994 88888774
No 18
>KOG0420|consensus
Probab=99.91 E-value=1.1e-25 Score=155.68 Aligned_cols=111 Identities=25% Similarity=0.506 Sum_probs=94.7
Q ss_pred chhhhhHHHHHHHHHHhcCCCcccc----cCcc--cEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecccc
Q psy11956 4 ASAGNRRMNIDVIKLIESKHEGTTL----KGLK--EFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHP 77 (126)
Q Consensus 4 ~~~~~~RL~~e~~~l~~~~~~~~~~----~~~~--~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hp 77 (126)
.|+|+.||++|+.++.--+...+.. ++.+ +++++|. |+++.|+||.|.|.+.+|+.||++||+|+|.|++|||
T Consensus 26 ~s~a~lrl~~di~elnLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HP 104 (184)
T KOG0420|consen 26 VSAALLRLKKDILELNLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHP 104 (184)
T ss_pred ccHHHHHHHhhhhhccCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccC
Confidence 3789999999999885432222221 3444 5999999 9999999999999999999999999999999999999
Q ss_pred ccccccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCC
Q psy11956 78 NIDEVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122 (126)
Q Consensus 78 nv~~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~ 122 (126)
||+. +|.||+ .++|+|+.++.+|+ .+++.++.+||.++
T Consensus 105 NId~-~GnVCLnILRedW~P~lnL~sIi------~GL~~LF~epn~eD 145 (184)
T KOG0420|consen 105 NIDL-DGNVCLNILREDWRPVLNLNSII------YGLQFLFLEPNPED 145 (184)
T ss_pred CcCC-cchHHHHHHHhcCccccchHHHH------HHHHHHhccCCCcc
Confidence 9995 999999 78899999999996 88888888888765
No 19
>KOG0423|consensus
Probab=99.91 E-value=1.1e-25 Score=155.97 Aligned_cols=112 Identities=19% Similarity=0.441 Sum_probs=104.8
Q ss_pred hhhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccccc
Q psy11956 5 SAGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 80 (126)
Q Consensus 5 ~~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~ 80 (126)
--..+.|.+|+++|..++++|+.+ +|+.+..+.|-||.||||++|.|+..+.+..+||.+||+-+|.|+||||||-
T Consensus 9 p~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVa 88 (223)
T KOG0423|consen 9 PNVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVA 88 (223)
T ss_pred hHHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcc
Confidence 456789999999999999999976 7888999999999999999999999999999999999999999999999999
Q ss_pred cccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956 81 EVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV 123 (126)
Q Consensus 81 ~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~ 123 (126)
.+|.||. ..+|+|.+.++.+| ..+.+++.|||+++.
T Consensus 89 -aNGEICVNtLKkDW~p~LGirHvL------ltikCLLI~PnPESA 127 (223)
T KOG0423|consen 89 -ANGEICVNTLKKDWNPSLGIRHVL------LTIKCLLIEPNPESA 127 (223)
T ss_pred -cCceehhhhhhcccCcccchhhHh------hhhheeeecCChHHH
Confidence 5999999 79999999999998 999999999998763
No 20
>KOG0428|consensus
Probab=99.84 E-value=9.4e-22 Score=143.19 Aligned_cols=102 Identities=23% Similarity=0.408 Sum_probs=86.1
Q ss_pred chhhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecccccc
Q psy11956 4 ASAGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 79 (126)
Q Consensus 4 ~~~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv 79 (126)
.+++.|||++|.++|+ ++.+..-+ +|+++|+++|.||.+|-|+||+||.+|.||.+||++||.+.+.|+--..-
T Consensus 9 KnpaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNGRFE- 86 (314)
T KOG0428|consen 9 KNPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNGRFE- 86 (314)
T ss_pred cCHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCCcee-
Confidence 4789999999999999 45444433 89999999999999999999999999999999999999999999532222
Q ss_pred ccccceeee------CceeeEEEEeCCCCCCCCCeeeeeccC
Q psy11956 80 DEVSAVFYY------GGVWKVRVHLPEHYPFKSPSIGFMNKM 115 (126)
Q Consensus 80 ~~~~g~ic~------~~~w~p~~~~~~ilp~~~p~~~~~~~l 115 (126)
-+-+||+ ++.|.|++++++.| ++++..|
T Consensus 87 --~nkKiCLSISgyHPEtWqPSWSiRTAL------lAlIgFm 120 (314)
T KOG0428|consen 87 --VNKKICLSISGYHPETWQPSWSIRTAL------LALIGFM 120 (314)
T ss_pred --eCceEEEEecCCCccccCcchhHHHHH------HHHHccc
Confidence 3468999 79999999999886 6666554
No 21
>KOG0895|consensus
Probab=99.48 E-value=7.8e-15 Score=123.96 Aligned_cols=106 Identities=16% Similarity=0.332 Sum_probs=89.6
Q ss_pred hHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeee--ccccccccc
Q psy11956 9 RRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNK--MYHPNIDEV 82 (126)
Q Consensus 9 ~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~--i~Hpnv~~~ 82 (126)
+..+.|++-|..+...++.+ +.+....+.|.|+.+|||++|.|.|+|.||++||.+||.+...+. .+.||+|.
T Consensus 854 ~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~- 932 (1101)
T KOG0895|consen 854 KKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYE- 932 (1101)
T ss_pred HHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCccccc-
Confidence 44455666667777777776 566667889999999999999999999999999999999999984 58999995
Q ss_pred cceeee----------CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCC
Q psy11956 83 SAVFYY----------GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 121 (126)
Q Consensus 83 ~g~ic~----------~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~ 121 (126)
+|++|+ .+.|+|+-++-.+| +++++++..-.+|
T Consensus 933 ~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l------~s~q~l~l~~~py 975 (1101)
T KOG0895|consen 933 DGKVCLSLLNTWHGRGNEVWNPSSSILQVL------VSIQGLVLNEEPY 975 (1101)
T ss_pred ccceehhhhccccCCCccccCcchhHHHHH------HHhhhhhcccccc
Confidence 999999 57999999999997 9999988755444
No 22
>KOG0429|consensus
Probab=99.35 E-value=2.7e-12 Score=92.60 Aligned_cols=79 Identities=20% Similarity=0.378 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCC--CCCceeEeeeccccccccc
Q psy11956 9 RRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPF--KSPSIGFMNKMYHPNIDEV 82 (126)
Q Consensus 9 ~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~--~pP~v~f~t~i~Hpnv~~~ 82 (126)
..|+.|+..+.+.+.+|+++ .|-+.|..+|++ ..+.|.||+|+|.|.+|.+||. +-|+|.|.+.++||+|...
T Consensus 22 y~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~ 100 (258)
T KOG0429|consen 22 YALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPK 100 (258)
T ss_pred HHHHHHHHHHHhccCCceEEcccccccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCC
Confidence 35677888888889999987 688899999995 5567999999999999999995 4599999999999999999
Q ss_pred cceeee
Q psy11956 83 SAVFYY 88 (126)
Q Consensus 83 ~g~ic~ 88 (126)
++.+|+
T Consensus 101 skeLdl 106 (258)
T KOG0429|consen 101 SKELDL 106 (258)
T ss_pred ccceeH
Confidence 999999
No 23
>KOG0895|consensus
Probab=99.33 E-value=2.7e-12 Score=108.84 Aligned_cols=107 Identities=17% Similarity=0.380 Sum_probs=95.8
Q ss_pred hhhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeee---cccc
Q psy11956 5 SAGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNK---MYHP 77 (126)
Q Consensus 5 ~~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~---i~Hp 77 (126)
.-..+|+++|++.+.++.++++.. ..+...++.|.|+.+|||++|.|.|+|.+|..||..||.+.+.+. .+.|
T Consensus 281 ~~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nP 360 (1101)
T KOG0895|consen 281 KNWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNP 360 (1101)
T ss_pred hhhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecC
Confidence 346789999999999999999876 678889999999999999999999999999999999999999986 6899
Q ss_pred ccccccceeee-------C---ceeeEE-EEeCCCCCCCCCeeeeeccCCCC
Q psy11956 78 NIDEVSAVFYY-------G---GVWKVR-VHLPEHYPFKSPSIGFMNKMYHP 118 (126)
Q Consensus 78 nv~~~~g~ic~-------~---~~w~p~-~~~~~ilp~~~p~~~~~~~l~~p 118 (126)
|.|. +|+||+ + +.|+|. .++.++| +.++.++.+.
T Consensus 361 NlYn-~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL------~sIQ~Li~~e 405 (1101)
T KOG0895|consen 361 NLYN-DGKVCLSLLGTWTGSRREKWTPNGSSLLQVL------ESIQGLILNE 405 (1101)
T ss_pred Cccc-CceEEeeeeeecccccccCCCccccchhhhh------hhhhhhhccc
Confidence 9995 999999 3 789998 8888887 8888887755
No 24
>KOG0896|consensus
Probab=99.23 E-value=1e-11 Score=83.30 Aligned_cols=98 Identities=16% Similarity=0.280 Sum_probs=81.6
Q ss_pred hhhhhHHHHHHHHHHhcCCCcccc------cCc--ccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccc
Q psy11956 5 SAGNRRMNIDVIKLIESKHEGTTL------KGL--KEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYH 76 (126)
Q Consensus 5 ~~~~~RL~~e~~~l~~~~~~~~~~------~~~--~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~H 76 (126)
.++.-||.+|+.+-++...++... +|+ ..|...|.||..|+||+.+|.+.|.+..+||..||+|+|.+++--
T Consensus 4 vPrnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm 83 (138)
T KOG0896|consen 4 VPRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINM 83 (138)
T ss_pred cccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeee
Confidence 578889999998887765555432 344 369999999999999999999999999999999999999999988
Q ss_pred cccccccceeee-----CceeeEEEEeCCCC
Q psy11956 77 PNIDEVSAVFYY-----GGVWKVRVHLPEHY 102 (126)
Q Consensus 77 pnv~~~~g~ic~-----~~~w~p~~~~~~il 102 (126)
..|...+|.+.- -..|+=.+++..++
T Consensus 84 ~gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl 114 (138)
T KOG0896|consen 84 NGVNSSNGVVDPRDITVLARWQRSYSIKMVL 114 (138)
T ss_pred cccccCCCccCccccchhhcccccchhhHHH
Confidence 887766666654 57899888888875
No 25
>KOG0417|consensus
Probab=98.85 E-value=3.3e-09 Score=72.62 Aligned_cols=51 Identities=43% Similarity=0.916 Sum_probs=45.9
Q ss_pred cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956 75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE 126 (126)
Q Consensus 75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~ 126 (126)
||--|.|+.|+++.||.|...+.+.+.||++||.|.|.++|||||+++ +|+
T Consensus 33 w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~-~G~ 83 (148)
T KOG0417|consen 33 WQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDS-NGR 83 (148)
T ss_pred EEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCc-ccc
Confidence 555667788899999999999999999999999999999999999995 663
No 26
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=3.7e-09 Score=73.41 Aligned_cols=51 Identities=39% Similarity=0.883 Sum_probs=45.0
Q ss_pred cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956 75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE 126 (126)
Q Consensus 75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~ 126 (126)
||.-|.++.++.+.|+.|+..+.+.+.||++||.+.|++.||||||| .||+
T Consensus 38 w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~-~~G~ 88 (153)
T COG5078 38 WEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVD-PSGN 88 (153)
T ss_pred EEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcC-CCCC
Confidence 44555667788888999999999999999999999999999999999 5884
No 27
>KOG0416|consensus
Probab=98.75 E-value=7.8e-09 Score=72.11 Aligned_cols=46 Identities=67% Similarity=1.224 Sum_probs=41.9
Q ss_pred cccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956 81 EVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE 126 (126)
Q Consensus 81 ~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~ 126 (126)
++.++.+.+|.|+-...+.+.||++.|.|+|+++|||||||..||.
T Consensus 38 GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SGs 83 (189)
T KOG0416|consen 38 GPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASGS 83 (189)
T ss_pred CCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccCc
Confidence 4566677789999999999999999999999999999999999983
No 28
>KOG0419|consensus
Probab=98.52 E-value=1.5e-07 Score=63.29 Aligned_cols=51 Identities=31% Similarity=0.651 Sum_probs=42.7
Q ss_pred cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956 75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE 126 (126)
Q Consensus 75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~ 126 (126)
|.--|.|+.++.+.++.|+.++.+.+.||.+||.+.|++.|||||||.+ |.
T Consensus 36 W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya~-G~ 86 (152)
T KOG0419|consen 36 WNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYAD-GS 86 (152)
T ss_pred eeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcCCC-Cc
Confidence 3334445566777789999999999999999999999999999999985 63
No 29
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=98.49 E-value=1.3e-07 Score=65.42 Aligned_cols=50 Identities=40% Similarity=0.813 Sum_probs=45.5
Q ss_pred cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCC
Q psy11956 75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG 125 (126)
Q Consensus 75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g 125 (126)
||..|.++.|+.+.++.|...+.+...||++||.+.|.+.++||||++ +|
T Consensus 33 w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~-~G 82 (147)
T PLN00172 33 WTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINS-NG 82 (147)
T ss_pred EEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECC-CC
Confidence 666777778888889999999999999999999999999999999997 67
No 30
>KOG0420|consensus
Probab=98.45 E-value=4.2e-07 Score=63.62 Aligned_cols=42 Identities=36% Similarity=0.883 Sum_probs=37.9
Q ss_pred cceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCC
Q psy11956 83 SAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG 125 (126)
Q Consensus 83 ~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g 125 (126)
+-.++.++.|...+.+...||++||.+.+++++||||||. .|
T Consensus 69 dEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId~-~G 110 (184)
T KOG0420|consen 69 DEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNIDL-DG 110 (184)
T ss_pred CcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcCC-cc
Confidence 4556668999999999999999999999999999999998 44
No 31
>KOG0424|consensus
Probab=98.44 E-value=2.3e-07 Score=63.16 Aligned_cols=53 Identities=28% Similarity=0.597 Sum_probs=49.4
Q ss_pred eccccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956 73 KMYHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE 126 (126)
Q Consensus 73 ~i~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~ 126 (126)
-.|++.|-++.|+.+.|+-+...+.+.+.||+.||.+.|-..+||||||. ||.
T Consensus 39 ~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~HPNVyp-sgt 91 (158)
T KOG0424|consen 39 MNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFHPNVYP-SGT 91 (158)
T ss_pred EEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcCCCcCC-CCc
Confidence 35899999999999999999999999999999999999999999999998 663
No 32
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=98.42 E-value=2.6e-07 Score=64.27 Aligned_cols=51 Identities=37% Similarity=0.843 Sum_probs=44.4
Q ss_pred cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956 75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE 126 (126)
Q Consensus 75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~ 126 (126)
||.-|.++.|+.+.++.|...+.+...||++||.+.|.+.++||||++ +|.
T Consensus 34 w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~-~G~ 84 (152)
T PTZ00390 34 FKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK-LGR 84 (152)
T ss_pred EEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECC-CCe
Confidence 445555667888889999999999999999999999999999999997 673
No 33
>KOG0418|consensus
Probab=98.39 E-value=3.8e-07 Score=64.68 Aligned_cols=48 Identities=38% Similarity=0.884 Sum_probs=43.1
Q ss_pred cccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956 79 IDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE 126 (126)
Q Consensus 79 v~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~ 126 (126)
|-|+.|+.+.||.|.-.+++.+-||++||.+.|.++++||||.+++|.
T Consensus 42 I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnVSs~tGa 89 (200)
T KOG0418|consen 42 IAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNVSSQTGA 89 (200)
T ss_pred ecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCCCccccc
Confidence 444567777799999999999999999999999999999999999994
No 34
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=98.32 E-value=5.1e-07 Score=61.55 Aligned_cols=51 Identities=37% Similarity=0.851 Sum_probs=40.9
Q ss_pred cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956 75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE 126 (126)
Q Consensus 75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~ 126 (126)
||..|.++.|+.+.++.|...+.+..-||++||.+.|.+.++||||+ .+|.
T Consensus 30 w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~-~~G~ 80 (140)
T PF00179_consen 30 WHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNID-ENGR 80 (140)
T ss_dssp EEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB--TTSB
T ss_pred EEEEEeccCccceeccccccccccccccccccccccccccccccccc-cccc
Confidence 56666666778888999999999999999999999999999999999 4773
No 35
>KOG0425|consensus
Probab=98.30 E-value=8.6e-07 Score=61.24 Aligned_cols=43 Identities=37% Similarity=0.886 Sum_probs=38.9
Q ss_pred ccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCC
Q psy11956 82 VSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG 125 (126)
Q Consensus 82 ~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g 125 (126)
+..+++.||-++..+++...||..||.+.|.++|+|||||+ +|
T Consensus 45 ppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~-~G 87 (171)
T KOG0425|consen 45 PPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYE-DG 87 (171)
T ss_pred CCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCC-CC
Confidence 34567779999999999999999999999999999999998 55
No 36
>KOG0422|consensus
Probab=98.12 E-value=3.7e-06 Score=57.10 Aligned_cols=43 Identities=42% Similarity=0.916 Sum_probs=37.3
Q ss_pred cceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956 83 SAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE 126 (126)
Q Consensus 83 ~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~ 126 (126)
++-.+-.+.|+-.+++.-.||++||.+.|.++|||||||+. |+
T Consensus 42 d~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe~-gq 84 (153)
T KOG0422|consen 42 DKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDEK-GQ 84 (153)
T ss_pred CCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCCC-Cc
Confidence 44444478899999999999999999999999999999995 63
No 37
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=98.08 E-value=3.9e-06 Score=57.53 Aligned_cols=51 Identities=41% Similarity=0.902 Sum_probs=44.6
Q ss_pred cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956 75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE 126 (126)
Q Consensus 75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~ 126 (126)
||..+.++.+..+.++.+...+.+.+.||++||.+.|.+.++||||+. +|.
T Consensus 31 w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~-~G~ 81 (145)
T smart00212 31 WTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDS-SGE 81 (145)
T ss_pred EEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECC-CCC
Confidence 556666567777778899999999999999999999999999999997 884
No 38
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=98.03 E-value=9e-06 Score=55.49 Aligned_cols=51 Identities=41% Similarity=0.938 Sum_probs=42.0
Q ss_pred cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956 75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE 126 (126)
Q Consensus 75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~ 126 (126)
|+..+.++.++++.++.+...+.+...||++||.+.|.+.++||||+ .+|.
T Consensus 31 w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~-~~G~ 81 (141)
T cd00195 31 WHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVD-ENGK 81 (141)
T ss_pred EEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCC-CCCC
Confidence 44444544466666888999999999999999999999999999999 4774
No 39
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=97.89 E-value=8.5e-06 Score=55.57 Aligned_cols=80 Identities=18% Similarity=0.260 Sum_probs=45.7
Q ss_pred hhhhhHHHHHHHHHHhcCCCcccc--cCcccEEEEEECCCCCCCCCCE----------EEEEEEcCCCCCCCCCceeEee
Q psy11956 5 SAGNRRMNIDVIKLIESKHEGTTL--KGLKEFCVKFFGPRDTPYEGGV----------WKVRVHLPEHYPFKSPSIGFMN 72 (126)
Q Consensus 5 ~~~~~RL~~e~~~l~~~~~~~~~~--~~~~~w~~~i~gp~~t~y~gg~----------f~~~i~~p~~yP~~pP~v~f~t 72 (126)
....+||..||+.|.+ ++.. ++-.+|.-.=.-++||-|.|.+ |.+++++|..||..||.+....
T Consensus 23 ~~W~~RLKEEy~aLI~----Yv~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~lPe 98 (161)
T PF08694_consen 23 DLWVQRLKEEYQALIK----YVENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIALPE 98 (161)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-GG
T ss_pred HHHHHHHHHHHHHHHH----HHHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceeccc
Confidence 3567899999999865 2221 4555676555668888888765 5566778999999999998752
Q ss_pred ------eccccccccccceeeeCceeeE
Q psy11956 73 ------KMYHPNIDEVSAVFYYGGVWKV 94 (126)
Q Consensus 73 ------~i~Hpnv~~~~g~ic~~~~w~p 94 (126)
++|. .|+||+...|+|
T Consensus 99 LdGKTaKMYR------GGkIClt~HFkP 120 (161)
T PF08694_consen 99 LDGKTAKMYR------GGKICLTDHFKP 120 (161)
T ss_dssp GTTT-SSBCC------CCBB---TTHHH
T ss_pred cCCchhhhhc------CceEeeecccch
Confidence 4444 799999555444
No 40
>KOG0421|consensus
Probab=97.88 E-value=2.3e-05 Score=53.61 Aligned_cols=45 Identities=31% Similarity=0.749 Sum_probs=40.0
Q ss_pred ccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCC
Q psy11956 78 NIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122 (126)
Q Consensus 78 nv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~ 122 (126)
-|.++.++++.+-.++.++++..-||++||.+.|++.++|||||-
T Consensus 64 tItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~ 108 (175)
T KOG0421|consen 64 TITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDL 108 (175)
T ss_pred EeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccc
Confidence 344556777778899999999999999999999999999999997
No 41
>KOG0426|consensus
Probab=97.82 E-value=2.3e-05 Score=52.84 Aligned_cols=50 Identities=32% Similarity=0.686 Sum_probs=42.5
Q ss_pred cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCC
Q psy11956 75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG 125 (126)
Q Consensus 75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g 125 (126)
|.+-|-++.|+-..++.|...+++...||..||.+.|...|+|||++. +|
T Consensus 37 W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy~-dG 86 (165)
T KOG0426|consen 37 WECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNIYP-DG 86 (165)
T ss_pred eeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCcccC-CC
Confidence 456666666665558899999999999999999999999999999998 55
No 42
>KOG0897|consensus
Probab=97.54 E-value=5.7e-06 Score=54.34 Aligned_cols=59 Identities=7% Similarity=0.121 Sum_probs=45.0
Q ss_pred EEEEEEcCCCCCCCCCceeEeeeccccccccccceeee----CceeeEEEEeCCCCCCCCCeeeeeccC
Q psy11956 51 WKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVFYY----GGVWKVRVHLPEHYPFKSPSIGFMNKM 115 (126)
Q Consensus 51 f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~----~~~w~p~~~~~~ilp~~~p~~~~~~~l 115 (126)
..+.+.|+.+||+.||.++-..++..-.-.-.+|.||+ ..+|+.+++++.++ +++.+.+
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi------~qiaatl 75 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVI------MQIAATL 75 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHH------HHHHHHh
Confidence 34567899999999999998886543322223899999 79999999999986 6666544
No 43
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=97.44 E-value=0.00022 Score=48.36 Aligned_cols=53 Identities=15% Similarity=0.483 Sum_probs=43.2
Q ss_pred CCCEEEEEEEcCCCCCCCCCceeEeeec---cccccccccceeee------CceeeEEEEeCC
Q psy11956 47 EGGVWKVRVHLPEHYPFKSPSIGFMNKM---YHPNIDEVSAVFYY------GGVWKVRVHLPE 100 (126)
Q Consensus 47 ~gg~f~~~i~~p~~yP~~pP~v~f~t~i---~Hpnv~~~~g~ic~------~~~w~p~~~~~~ 100 (126)
.|+.+.+.|.+|++||..||.|....+. +-|||+. +|.+|+ .+.|.|.-.+.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~-~G~LCl~~~~~~~D~~~P~~~~~~ 95 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVES-DGKLCLLDEELVLDPWDPEGIIAD 95 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcC-CCeEEEecCCcccCccCHHHHHHH
Confidence 6899999999999999999999999754 6889996 999999 345555544433
No 44
>KOG3357|consensus
Probab=97.35 E-value=0.00034 Score=47.18 Aligned_cols=83 Identities=18% Similarity=0.241 Sum_probs=56.6
Q ss_pred hhhhHHHHHHHHHHhcCCCcccccCcccEEEEEECCCCCCCCCCE----------EEEEEEcCCCCCCCCCceeEee---
Q psy11956 6 AGNRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGV----------WKVRVHLPEHYPFKSPSIGFMN--- 72 (126)
Q Consensus 6 ~~~~RL~~e~~~l~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~----------f~~~i~~p~~yP~~pP~v~f~t--- 72 (126)
...+||..||+.|....... .++-..|.-.-..++||-|-|.+ |.+++++|-.||-.+|.+....
T Consensus 27 ~wvqrlkeey~sli~yvqnn--k~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpeldg 104 (167)
T KOG3357|consen 27 LWVQRLKEEYQSLIAYVQNN--KSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPELDG 104 (167)
T ss_pred HHHHHHHHHHHHHHHHHHhC--cccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccccccCc
Confidence 45789999999985421111 13445676555668899888865 4556677999999999987642
Q ss_pred ---eccccccccccceeeeCceeeEEE
Q psy11956 73 ---KMYHPNIDEVSAVFYYGGVWKVRV 96 (126)
Q Consensus 73 ---~i~Hpnv~~~~g~ic~~~~w~p~~ 96 (126)
++|. .|+||+.+.++|-+
T Consensus 105 ktakmyr------ggkiclt~hfkplw 125 (167)
T KOG3357|consen 105 KTAKMYR------GGKICLTDHFKPLW 125 (167)
T ss_pred hhhhhhc------CceEeeccccchhh
Confidence 2232 79999977666643
No 45
>KOG0423|consensus
Probab=97.20 E-value=0.00027 Score=49.78 Aligned_cols=48 Identities=27% Similarity=0.686 Sum_probs=42.8
Q ss_pred ccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956 78 NIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE 126 (126)
Q Consensus 78 nv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~ 126 (126)
.|+++.|+.+.++-|...+.+...||+.||.-.|+++||||||-. +|+
T Consensus 45 ~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaa-NGE 92 (223)
T KOG0423|consen 45 DIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAA-NGE 92 (223)
T ss_pred hccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCccc-Cce
Confidence 466678888889999999999999999999999999999999987 453
No 46
>KOG0427|consensus
Probab=97.13 E-value=0.001 Score=44.96 Aligned_cols=49 Identities=27% Similarity=0.606 Sum_probs=43.8
Q ss_pred cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCC-CCCCCCC
Q psy11956 75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMY-HPNIDEV 123 (126)
Q Consensus 75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~-~pn~~~~ 123 (126)
|--.|.+..|+++.++.+.....+.+-||++.|.+.|+..+- ||++|+|
T Consensus 46 Wii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiYSN 95 (161)
T KOG0427|consen 46 WIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIYSN 95 (161)
T ss_pred eEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCceecC
Confidence 445666789999999999999999999999999999999865 9999984
No 47
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=96.47 E-value=0.019 Score=36.90 Aligned_cols=66 Identities=15% Similarity=0.126 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHhcCCCcc-cc--cCcccEEEEEEC--CCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeec
Q psy11956 9 RRMNIDVIKLIESKHEGT-TL--KGLKEFCVKFFG--PRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKM 74 (126)
Q Consensus 9 ~RL~~e~~~l~~~~~~~~-~~--~~~~~w~~~i~g--p~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i 74 (126)
.+.+.|+..|+.--.... .. .+...+.+.+.. ...+.-....+++.+.||++||..+|.+.+....
T Consensus 4 e~~~~EieaL~sIy~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDFIEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHSSSSESSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCccccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 456678888877554444 22 333345555521 2333344567999999999999999999988753
No 48
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=96.46 E-value=0.00076 Score=45.17 Aligned_cols=66 Identities=20% Similarity=0.471 Sum_probs=39.6
Q ss_pred ccEEEEEECCCCCCCCCCEEEE--EEEcCCCCCCCCCceeEeeec-----cccccccccceeee--CceeeE-EEEe
Q psy11956 32 KEFCVKFFGPRDTPYEGGVWKV--RVHLPEHYPFKSPSIGFMNKM-----YHPNIDEVSAVFYY--GGVWKV-RVHL 98 (126)
Q Consensus 32 ~~w~~~i~gp~~t~y~gg~f~~--~i~~p~~yP~~pP~v~f~t~i-----~Hpnv~~~~g~ic~--~~~w~p-~~~~ 98 (126)
.+-.+.+.|--.-.|+|..|.+ .|-+|++||.+||.+...... -+.+|+ .+|++++ -..|+. ..++
T Consensus 29 ~~~LL~L~Gtipi~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd-~~G~v~~pyL~~W~~~~s~L 104 (121)
T PF05743_consen 29 SKLLLCLYGTIPITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVD-SNGRVYLPYLQNWNPPSSNL 104 (121)
T ss_dssp EEEEEEEEEEEEECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB--TTSBB-SHHHHT--TTTS-H
T ss_pred hheEEEEecCcccccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeEC-CCCCEeCchhccCCCCCCCH
Confidence 3444445553334588888865 566899999999999887421 233999 4999998 578887 3443
No 49
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=94.60 E-value=0.23 Score=31.49 Aligned_cols=26 Identities=35% Similarity=0.630 Sum_probs=22.4
Q ss_pred CCEEEEEEEcCCCCCCCCCceeEeee
Q psy11956 48 GGVWKVRVHLPEHYPFKSPSIGFMNK 73 (126)
Q Consensus 48 gg~f~~~i~~p~~yP~~pP~v~f~t~ 73 (126)
.-.+.+.+.+|++||..+|.+.+.+.
T Consensus 40 ~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 40 YVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred ceEEEEEEECCCCCCCCCCCeEEECC
Confidence 45588999999999999999998764
No 50
>KOG0896|consensus
Probab=91.19 E-value=0.45 Score=32.38 Aligned_cols=44 Identities=16% Similarity=0.424 Sum_probs=37.6
Q ss_pred cceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956 83 SAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE 126 (126)
Q Consensus 83 ~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~ 126 (126)
.-++.....++..+.+..-||-.||.+.|.+++..+.+++.+|+
T Consensus 49 prT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn~~~g~ 92 (138)
T KOG0896|consen 49 PRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVNSSNGV 92 (138)
T ss_pred CCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccccCCCc
Confidence 33444466788999999999999999999999999999998884
No 51
>KOG2391|consensus
Probab=88.66 E-value=0.36 Score=37.70 Aligned_cols=61 Identities=23% Similarity=0.438 Sum_probs=43.2
Q ss_pred EECCCCCCCCCCEEEEEE--EcCCCCCCCCCceeEeee---c--cccccccccceeee--CceeeE-EEEeC
Q psy11956 38 FFGPRDTPYEGGVWKVRV--HLPEHYPFKSPSIGFMNK---M--YHPNIDEVSAVFYY--GGVWKV-RVHLP 99 (126)
Q Consensus 38 i~gp~~t~y~gg~f~~~i--~~p~~yP~~pP~v~f~t~---i--~Hpnv~~~~g~ic~--~~~w~p-~~~~~ 99 (126)
+.|---.+|.|..|-+-| =+.+.||..||.+..... + -|-+|+ ++|.|.| -..|.+ +.++.
T Consensus 55 ~~GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd-~nG~V~LPYLh~W~~pssdLv 125 (365)
T KOG2391|consen 55 LDGTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVD-PNGKVYLPYLHNWDPPSSDLV 125 (365)
T ss_pred ccCcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccC-CCCeEechhhccCCCccchHH
Confidence 444444578888877654 579999999999876621 1 388999 5999999 577854 44443
No 52
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=88.16 E-value=3.5 Score=27.65 Aligned_cols=44 Identities=14% Similarity=0.298 Sum_probs=34.1
Q ss_pred cCcccEEEEEEC--CCCCCCCCCEEEEEEEcCCCCCCCCCceeEeee
Q psy11956 29 KGLKEFCVKFFG--PRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNK 73 (126)
Q Consensus 29 ~~~~~w~~~i~g--p~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~ 73 (126)
+.-..|.+ |.| .+.+.|.+..-.+-|.+|+.||..+|.+.+..+
T Consensus 21 eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P 66 (122)
T PF14462_consen 21 EGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYP 66 (122)
T ss_pred eCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECC
Confidence 44445655 655 555669999999999999999999998877764
No 53
>KOG0894|consensus
Probab=86.53 E-value=0.91 Score=33.40 Aligned_cols=39 Identities=31% Similarity=0.717 Sum_probs=35.4
Q ss_pred cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeec
Q psy11956 75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMN 113 (126)
Q Consensus 75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~ 113 (126)
||--|.++.++.+.||.+.=++.+...||++||.|.+++
T Consensus 37 WHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiT 75 (244)
T KOG0894|consen 37 WHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMIT 75 (244)
T ss_pred eEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEEC
Confidence 788888888888889999999999999999999998776
No 54
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=85.04 E-value=2.3 Score=32.68 Aligned_cols=61 Identities=18% Similarity=0.259 Sum_probs=45.2
Q ss_pred hhhhHHHHHHHHHHhcCCCcccc-cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEee
Q psy11956 6 AGNRRMNIDVIKLIESKHEGTTL-KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMN 72 (126)
Q Consensus 6 ~~~~RL~~e~~~l~~~~~~~~~~-~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t 72 (126)
..-.+|.+|+.++..+....+.. +++....+.+.. +....-++|.++.+||.++|.+...-
T Consensus 99 ~~ys~ll~EIe~IGW~kl~~i~~d~~ls~i~l~~~D------~~R~H~l~l~l~~~yp~~~p~~~~~~ 160 (291)
T PF09765_consen 99 QYYSNLLKEIEAIGWDKLVQIQFDDDLSTIKLKIFD------SSRQHYLELKLPSNYPFEPPSCSLDL 160 (291)
T ss_dssp GGC-CHHHHHHHHHCGCCEEEEE-CCCSEEEEEEET------TCEEEEEEEETTTTTTTSEEEECS-T
T ss_pred HHHHHHHHHHHHhccccceEEecCCCccEEEEEEEc------CCceEEEEEEECCCCCCCCceeeCCC
Confidence 45678889999998877766643 677888888872 23556789999999999999865554
No 55
>KOG0429|consensus
Probab=83.97 E-value=3.1 Score=30.78 Aligned_cols=41 Identities=32% Similarity=0.706 Sum_probs=34.8
Q ss_pred eeeCceeeEEEEeCCCCC--CCCCeeeeeccCCCCCCCCCCCC
Q psy11956 86 FYYGGVWKVRVHLPEHYP--FKSPSIGFMNKMYHPNIDEVSGE 126 (126)
Q Consensus 86 ic~~~~w~p~~~~~~ilp--~~~p~~~~~~~l~~pn~~~~~g~ 126 (126)
++.++.|..+.-+.+.|| .+=|.+.|...++||.|++.||+
T Consensus 61 iyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~ske 103 (258)
T KOG0429|consen 61 IYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKSKE 103 (258)
T ss_pred cccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCccc
Confidence 334777899999999998 46699999999999999999875
No 56
>KOG4018|consensus
Probab=81.54 E-value=8.3 Score=28.33 Aligned_cols=61 Identities=16% Similarity=0.158 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHhcCCCcc-cc--cCcccEEEEEECCCCC--CCCCCEEEEEEEcCCCCCCCCCceeE
Q psy11956 9 RRMNIDVIKLIESKHEGT-TL--KGLKEFCVKFFGPRDT--PYEGGVWKVRVHLPEHYPFKSPSIGF 70 (126)
Q Consensus 9 ~RL~~e~~~l~~~~~~~~-~~--~~~~~w~~~i~gp~~t--~y~gg~f~~~i~~p~~yP~~pP~v~f 70 (126)
.-..+|+..|........ .. .+...+.+.|.--.+. -|.| .+.+.+.++++||.++|-+.+
T Consensus 5 EeQe~E~EaLeSIY~de~~~i~~~~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~ 70 (215)
T KOG4018|consen 5 EEQEEELEALESIYPDEFKHINSEDPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLIEA 70 (215)
T ss_pred HHHHHHHHHHHHhccchhhhhhccCCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCcceec
Confidence 344567777766544333 22 4444477777632221 1323 788899999999999999933
No 57
>KOG0428|consensus
Probab=71.15 E-value=5.5 Score=30.00 Aligned_cols=23 Identities=39% Similarity=0.779 Sum_probs=17.1
Q ss_pred eeEEEEeCCCCCCCCCeeeeecc
Q psy11956 92 WKVRVHLPEHYPFKSPSIGFMNK 114 (126)
Q Consensus 92 w~p~~~~~~ilp~~~p~~~~~~~ 114 (126)
|.-.+-+...||++||.+.+++.
T Consensus 59 YHGRI~lPadYPmKPPs~iLLTp 81 (314)
T KOG0428|consen 59 YHGRIVLPADYPMKPPSIILLTP 81 (314)
T ss_pred eeeeEecCCCCCCCCCeEEEEcC
Confidence 33344578889999999988763
No 58
>smart00340 HALZ homeobox associated leucin zipper.
Probab=70.87 E-value=4 Score=22.19 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=13.0
Q ss_pred hhhhHHHHHHHHHHhc
Q psy11956 6 AGNRRMNIDVIKLIES 21 (126)
Q Consensus 6 ~~~~RL~~e~~~l~~~ 21 (126)
.-.+||++|+++|...
T Consensus 19 eeNrRL~ke~~eLral 34 (44)
T smart00340 19 EENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4578999999999754
No 59
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=67.52 E-value=4.8 Score=28.25 Aligned_cols=49 Identities=14% Similarity=0.331 Sum_probs=32.7
Q ss_pred EEEEcCCCCCCCCCceeEeeecc---cccccc----ccceeee-C---ceeeEEEEeCCC
Q psy11956 53 VRVHLPEHYPFKSPSIGFMNKMY---HPNIDE----VSAVFYY-G---GVWKVRVHLPEH 101 (126)
Q Consensus 53 ~~i~~p~~yP~~pP~v~f~t~i~---Hpnv~~----~~g~ic~-~---~~w~p~~~~~~i 101 (126)
+.|.++.+||..+|.|.+..+.| +||+.. ....+|+ . ..|.+..+++.+
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~ 116 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGF 116 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHH
Confidence 56789999999999877665432 466652 1278999 2 455666665443
No 60
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=56.20 E-value=51 Score=24.23 Aligned_cols=69 Identities=16% Similarity=0.320 Sum_probs=42.9
Q ss_pred hhhhHHHHHHHHHHhcCCCcccccCcccEEEEEECCCCCCCCCCEEEEEEEcCCCC-------------------CCC--
Q psy11956 6 AGNRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHY-------------------PFK-- 64 (126)
Q Consensus 6 ~~~~RL~~e~~~l~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~y-------------------P~~-- 64 (126)
.+..||.+.++++++.. .+...-|.+....-.+.-| || |.+-++|..+= -..
T Consensus 9 s~~eR~~e~~~~~k~~L-----~~a~~GW~~~yyp~~~~~~-GG-y~f~~kF~~~~~Vtm~sd~~~~~~~~tS~Y~~~~~ 81 (235)
T PF14135_consen 9 SPAERINEALAEYKKIL-----TSAPNGWKLEYYPKTDQSY-GG-YTFLMKFDDDGKVTMASDFDSASTPSTSSYRLKQD 81 (235)
T ss_pred CHHHHHHHHHHHHHHHH-----hcCCCceEEEEECCCCccC-Cc-EEEEEEECCCCeEEEEEccCCCCceeeEEEEEecC
Confidence 46788888888887743 2333459999994443335 44 77777776543 211
Q ss_pred -CCceeEee--ecccccccc
Q psy11956 65 -SPSIGFMN--KMYHPNIDE 81 (126)
Q Consensus 65 -pP~v~f~t--~i~Hpnv~~ 81 (126)
-|.+.|.| .+.|...++
T Consensus 82 ~gp~LsFdTyN~~iH~~s~p 101 (235)
T PF14135_consen 82 QGPVLSFDTYNEYIHYFSDP 101 (235)
T ss_pred CceEEEEEeCCceEEEccCC
Confidence 27777776 367776663
No 61
>KOG0309|consensus
Probab=54.10 E-value=65 Score=28.50 Aligned_cols=65 Identities=15% Similarity=0.269 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHHHhcCCCccccc--Ccc--cEEEEEECCCCCCCCCCE-EEEEEEcCCCCCCC-CCceeEeee
Q psy11956 7 GNRRMNIDVIKLIESKHEGTTLK--GLK--EFCVKFFGPRDTPYEGGV-WKVRVHLPEHYPFK-SPSIGFMNK 73 (126)
Q Consensus 7 ~~~RL~~e~~~l~~~~~~~~~~~--~~~--~w~~~i~gp~~t~y~gg~-f~~~i~~p~~yP~~-pP~v~f~t~ 73 (126)
..+-|.+|+..|-.. ...+..+ +.. .-.+.+-+|-.-- .|-+ .++.|.||.+||.. +|.+.|..+
T Consensus 421 ~pQnLgeE~S~Ig~k-~~nV~fEkidva~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 421 LPQNLGEEFSLIGVK-IRNVNFEKIDVADRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhhhHHhHHhHhhcc-ccccceEeeccccceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEecC
Confidence 345566666655321 1112111 222 3344444433322 3333 46788999999995 699999853
No 62
>KOG4445|consensus
Probab=45.25 E-value=26 Score=27.31 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=22.2
Q ss_pred CEEEEEEEcCCCCCCCCCceeEeee
Q psy11956 49 GVWKVRVHLPEHYPFKSPSIGFMNK 73 (126)
Q Consensus 49 g~f~~~i~~p~~yP~~pP~v~f~t~ 73 (126)
-.+.+.+..++.||.+.|+|++..+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 5578889999999999999999865
No 63
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=44.76 E-value=35 Score=23.23 Aligned_cols=25 Identities=32% Similarity=0.592 Sum_probs=22.1
Q ss_pred CCEEEEEEEcCCCCC-CCCCceeEee
Q psy11956 48 GGVWKVRVHLPEHYP-FKSPSIGFMN 72 (126)
Q Consensus 48 gg~f~~~i~~p~~yP-~~pP~v~f~t 72 (126)
.|.|.|.-.+|-.|| .+||.+.|.-
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 488999999999999 9999998875
No 64
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=44.23 E-value=12 Score=26.33 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=15.8
Q ss_pred eecccc---ccccccceeeeCceeeE
Q psy11956 72 NKMYHP---NIDEVSAVFYYGGVWKV 94 (126)
Q Consensus 72 t~i~Hp---nv~~~~g~ic~~~~w~p 94 (126)
|+.||. ||+. +|.||.|..=.|
T Consensus 90 T~Ly~aPf~NV~~-~g~vC~G~~~~P 114 (175)
T PF14460_consen 90 TPLYHAPFFNVYS-NGSVCWGNNSLP 114 (175)
T ss_pred CeeEeCCccccCC-CCcEeeCCCcCC
Confidence 556665 9995 999999764444
No 65
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=43.58 E-value=37 Score=26.73 Aligned_cols=34 Identities=29% Similarity=0.497 Sum_probs=28.3
Q ss_pred CCCCCEEEEEEEcCCCCCCCCCceeEe-eeccccc
Q psy11956 45 PYEGGVWKVRVHLPEHYPFKSPSIGFM-NKMYHPN 78 (126)
Q Consensus 45 ~y~gg~f~~~i~~p~~yP~~pP~v~f~-t~i~Hpn 78 (126)
||.|...+-+|.|...||..||-+.|. ..-|+|.
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd 95 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPD 95 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCC
Confidence 388888888999999999999999996 3446663
No 66
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=41.64 E-value=38 Score=26.65 Aligned_cols=23 Identities=26% Similarity=0.609 Sum_probs=19.9
Q ss_pred EEEEEEEcCCCCCCCCCceeEee
Q psy11956 50 VWKVRVHLPEHYPFKSPSIGFMN 72 (126)
Q Consensus 50 ~f~~~i~~p~~yP~~pP~v~f~t 72 (126)
.|-+.|.+|..||...|.++|.+
T Consensus 307 ~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 307 TFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred EEEEEEeccCCCCCcCCeEEEEe
Confidence 36667889999999999999986
No 67
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=41.51 E-value=41 Score=24.14 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=22.2
Q ss_pred CCEEEEEEEcCCCCCCCCCceeEee
Q psy11956 48 GGVWKVRVHLPEHYPFKSPSIGFMN 72 (126)
Q Consensus 48 gg~f~~~i~~p~~yP~~pP~v~f~t 72 (126)
.|.|.|.=.+|--||.++|-|.|.-
T Consensus 86 ~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 86 DGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CccEEEEEECCCCCCCCCceEEEEE
Confidence 4778999999999999999998875
No 68
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=39.06 E-value=21 Score=20.82 Aligned_cols=11 Identities=9% Similarity=0.407 Sum_probs=8.1
Q ss_pred hhHHHHHHHHH
Q psy11956 8 NRRMNIDVIKL 18 (126)
Q Consensus 8 ~~RL~~e~~~l 18 (126)
.+||++||+++
T Consensus 36 r~rL~kEL~d~ 46 (59)
T PF12065_consen 36 RQRLRKELQDM 46 (59)
T ss_pred HHHHHHHHHHc
Confidence 46788888776
No 69
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=35.34 E-value=1e+02 Score=23.35 Aligned_cols=47 Identities=19% Similarity=0.381 Sum_probs=31.6
Q ss_pred cCcccEEEEEECCCCCCCCC---CEEEEEEEcC-----CCCCCCCCceeEeeecc
Q psy11956 29 KGLKEFCVKFFGPRDTPYEG---GVWKVRVHLP-----EHYPFKSPSIGFMNKMY 75 (126)
Q Consensus 29 ~~~~~w~~~i~gp~~t~y~g---g~f~~~i~~p-----~~yP~~pP~v~f~t~i~ 75 (126)
.|..-|.+.-..-+....+| ..|+..+.++ .|-||++|+|...++-|
T Consensus 100 KDp~PWkl~YrV~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~f 154 (276)
T PF00845_consen 100 KDPIPWKLYYRVEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQF 154 (276)
T ss_pred CCCCCeEEEEEeecCccccceeeeeeeceeeecccccccccccCCCceEeeeccc
Confidence 34455887777544444444 2356666664 68999999999998754
No 70
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=35.21 E-value=60 Score=22.57 Aligned_cols=25 Identities=28% Similarity=0.631 Sum_probs=21.7
Q ss_pred CCEEEEEEEcCCCCC-----CCCCceeEee
Q psy11956 48 GGVWKVRVHLPEHYP-----FKSPSIGFMN 72 (126)
Q Consensus 48 gg~f~~~i~~p~~yP-----~~pP~v~f~t 72 (126)
.|.|.|.-.+|--|| .+||-+.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 477999999999999 8999988775
No 71
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=33.66 E-value=24 Score=26.28 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=13.9
Q ss_pred eecccc---ccccccceeeeCce
Q psy11956 72 NKMYHP---NIDEVSAVFYYGGV 91 (126)
Q Consensus 72 t~i~Hp---nv~~~~g~ic~~~~ 91 (126)
|+.||. ||+. +|+||+|..
T Consensus 131 T~L~~aPffNV~~-~G~VC~G~~ 152 (228)
T TIGR03737 131 TKLYQAPLFNVWS-NGEICAGNA 152 (228)
T ss_pred CeeccCCcCccCC-CCeEeeCCC
Confidence 445665 9985 899999653
No 72
>TIGR03517 GldM_gliding gliding motility-associated protein GldM. This protein family, GldM, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile. The best conserved region, toward the N-terminus, is centered on a highly hydrobobic probable transmembrane helix. Two paralogs are found in Cytophaga hutchinsonii.
Probab=26.78 E-value=1.4e+02 Score=24.97 Aligned_cols=66 Identities=12% Similarity=0.116 Sum_probs=46.2
Q ss_pred hhhhHHHHHHHHHHhcCCCcccc------cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEe
Q psy11956 6 AGNRRMNIDVIKLIESKHEGTTL------KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFM 71 (126)
Q Consensus 6 ~~~~RL~~e~~~l~~~~~~~~~~------~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~ 71 (126)
+.+-.||.|++..+.+-...... -.+..+...+.-..+..|.|..|...|.+...---..|.+...
T Consensus 201 t~Ls~lQsDVr~~E~evl~~Ll~~~~~~d~~~d~~~a~V~~~s~~v~~Ge~~~a~vvL~a~ds~~~P~~~vn 272 (523)
T TIGR03517 201 TVLSKLQSDVKKIESEVLNSLLSEVGQDDFSVDNYQAIVIPKSDAVFAGETYEAEVVLGASDSTLQPTMFVN 272 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhhccccceeEEEEcCCceeecCCeEEEEEEEEecCCCcCceEEEC
Confidence 34556777777765543332221 2445788888878888899999999999987777777876554
No 73
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=24.48 E-value=1e+02 Score=20.16 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=15.9
Q ss_pred chhhhhHHHHHHHHHHhcCC
Q psy11956 4 ASAGNRRMNIDVIKLIESKH 23 (126)
Q Consensus 4 ~~~~~~RL~~e~~~l~~~~~ 23 (126)
.|.+.+||.++++++.+...
T Consensus 3 ~S~~~~~l~~~l~~~a~~~~ 22 (138)
T PF14532_consen 3 KSPAMRRLRRQLERLAKSSS 22 (138)
T ss_dssp SCHHHHHHHHHHHHHHCSSS
T ss_pred CCHHHHHHHHHHHHHhCCCC
Confidence 46899999999999975443
No 74
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=24.37 E-value=1.1e+02 Score=22.06 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=19.9
Q ss_pred CCEEEEEEEcCCCCCC-----CCCceeEee
Q psy11956 48 GGVWKVRVHLPEHYPF-----KSPSIGFMN 72 (126)
Q Consensus 48 gg~f~~~i~~p~~yP~-----~pP~v~f~t 72 (126)
.|.|.|+-..|-.||. .||-+.|.-
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~V 125 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVSV 125 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEEE
Confidence 4779999999999998 777766653
No 75
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=22.80 E-value=28 Score=30.58 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCCCCCceeEeee
Q psy11956 52 KVRVHLPEHYPFKSPSIGFMNK 73 (126)
Q Consensus 52 ~~~i~~p~~yP~~pP~v~f~t~ 73 (126)
-+.|.+|.+||..+|.+.+...
T Consensus 717 Pl~l~vP~~YP~~sp~~~~~~~ 738 (799)
T PF09606_consen 717 PLRLTVPADYPRQSPQCSVDRD 738 (799)
T ss_dssp ----------------------
T ss_pred CeeEeCCCCCCccCCcCcccHH
Confidence 4778899999999999877643
No 76
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=22.14 E-value=1.3e+02 Score=21.51 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=18.6
Q ss_pred CCEEEEEEEcCCCCCC-----CCCceeEe
Q psy11956 48 GGVWKVRVHLPEHYPF-----KSPSIGFM 71 (126)
Q Consensus 48 gg~f~~~i~~p~~yP~-----~pP~v~f~ 71 (126)
.|.|.|.-.+|--||. .||-+.|.
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 3779999999999995 66666554
No 77
>PF15572 Imm26: Immunity protein 26
Probab=21.90 E-value=98 Score=19.88 Aligned_cols=27 Identities=22% Similarity=0.652 Sum_probs=18.7
Q ss_pred CCCCCCCCCEEEEEEEcCCCCCCCCCceeEee
Q psy11956 41 PRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMN 72 (126)
Q Consensus 41 p~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t 72 (126)
+++..+.|.+|++ |..||++ +.|.|+-
T Consensus 7 ~~~~l~rG~i~R~----~~~ypye-~~VDFmV 33 (96)
T PF15572_consen 7 KEKYLWRGTIFRC----PGVYPYE-EVVDFMV 33 (96)
T ss_pred CCccEecceEEEe----cccCCCc-ccEEEEE
Confidence 3455677766654 6669999 7787774
No 78
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=21.58 E-value=1.4e+02 Score=22.71 Aligned_cols=30 Identities=17% Similarity=0.515 Sum_probs=26.7
Q ss_pred CCCCCCCEEEEEEEcCCCCCCCC--CceeEee
Q psy11956 43 DTPYEGGVWKVRVHLPEHYPFKS--PSIGFMN 72 (126)
Q Consensus 43 ~t~y~gg~f~~~i~~p~~yP~~p--P~v~f~t 72 (126)
.+.+.|..|++.|..|.+||... |.|.|..
T Consensus 15 ~s~~~~~~yri~i~~P~~~~~~~~YpVlY~lD 46 (264)
T COG2819 15 KSANTGRKYRIFIATPKNYPKPGGYPVLYMLD 46 (264)
T ss_pred eecCCCcEEEEEecCCCCCCCCCCCcEEEEec
Confidence 45688999999999999999988 9999886
No 79
>KOG1047|consensus
Probab=21.13 E-value=1e+02 Score=26.19 Aligned_cols=29 Identities=31% Similarity=0.802 Sum_probs=22.8
Q ss_pred CCCCCCEEEEEEEcCCCCCC---CCCceeEeee
Q psy11956 44 TPYEGGVWKVRVHLPEHYPF---KSPSIGFMNK 73 (126)
Q Consensus 44 t~y~gg~f~~~i~~p~~yP~---~pP~v~f~t~ 73 (126)
+||.=|+|.+ +.+|.+||+ +-|.++|.|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 4666677776 567889998 4699999986
Done!