RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11956
(126 letters)
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural
genomics, structural genomics consortium; 2.10A {Homo
sapiens}
Length = 179
Score = 118 bits (297), Expect = 4e-35
Identities = 64/83 (77%), Positives = 70/83 (84%)
Query: 1 MSSASAGNRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEH 60
MSS S G RRM+ DVIKLIESKHE T L GL EF VKF+GP+ TPYEGGVWKVRV LP+
Sbjct: 20 MSSPSPGKRRMDTDVIKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDK 79
Query: 61 YPFKSPSIGFMNKMYHPNIDEVS 83
YPFKSPSIGFMNK++HPNIDE S
Sbjct: 80 YPFKSPSIGFMNKIFHPNIDEAS 102
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI,
protein structure initiative ubiquitin conjugating
enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Length = 171
Score = 104 bits (262), Expect = 6e-30
Identities = 38/82 (46%), Positives = 49/82 (59%)
Query: 2 SSASAGNRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHY 61
+ NRR +D ++L S + + EF V+F GP TPYE G W + V LP Y
Sbjct: 8 AGNLRSNRRREMDYMRLCNSTRKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDY 67
Query: 62 PFKSPSIGFMNKMYHPNIDEVS 83
PFKSPSIGF N++ HPN+DE S
Sbjct: 68 PFKSPSIGFCNRILHPNVDERS 89
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL
structural genomics consortium, SGC, ligase; HET: PG4;
2.38A {Plasmodium falciparum}
Length = 152
Score = 96.2 bits (240), Expect = 1e-26
Identities = 40/76 (52%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 9 RRMNIDVIKLIESKHEGTTLKG-LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPS 67
R D KLI + ++ G ++F V F GP T YEGG+WKV V LP+ YPF SPS
Sbjct: 5 TRKQCDFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPS 64
Query: 68 IGFMNKMYHPNIDEVS 83
IGFMNK+ HPN+DE S
Sbjct: 65 IGFMNKLLHPNVDEAS 80
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating
enzyme, protein degradatio structural proteomics in
europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB:
2bf8_A
Length = 159
Score = 83.1 bits (206), Expect = 1e-21
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 7/90 (7%)
Query: 1 MSSASAGNRRMNIDVIKLIESKHEGT-----TLKG--LKEFCVKFFGPRDTPYEGGVWKV 53
M+ A+ +R+ + ++++S+ L E + GP DTPYEGG +++
Sbjct: 3 MAMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQL 62
Query: 54 RVHLPEHYPFKSPSIGFMNKMYHPNIDEVS 83
+ +PE YPF P + F+ K++HPNI V+
Sbjct: 63 EIKIPETYPFNPPKVRFITKIWHPNISSVT 92
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent
degradation, ligase; NMR {Saccharomyces cerevisiae}
SCOP: a.5.2.1 d.20.1.1
Length = 215
Score = 84.5 bits (209), Expect = 1e-21
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 5 SAGNRRMNIDVIKLIESKHEGTTLKGLKE-----FCVKFFGPRDTPYEGGVWKVRVHLPE 59
S+ +R+ ++ + + TL+ + E F GP TPYEGG + V + +P
Sbjct: 1 SSRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPM 60
Query: 60 HYPFKSPSIGFMNKMYHPNIDEVS 83
YPFK P + F K+YHPNI V+
Sbjct: 61 EYPFKPPKMQFDTKVYHPNISSVT 84
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A
2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Length = 155
Score = 81.2 bits (201), Expect = 7e-21
Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 4/83 (4%)
Query: 3 SASAGNRRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHLP 58
SA++ +R+ + KL+ G T + L+ F V GP +PYE G++++ ++LP
Sbjct: 2 SAASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLP 61
Query: 59 EHYPFKSPSIGFMNKMYHPNIDE 81
+ YP ++P + F+ K+YHPNID
Sbjct: 62 DDYPMEAPKVRFLTKIYHPNIDR 84
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein
complex, E3 ligase, ubiquitiny TPR, heat-shock protein;
2.9A {Homo sapiens} SCOP: d.20.1.1
Length = 154
Score = 80.0 bits (198), Expect = 2e-20
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 2 SSASAGNRRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHL 57
+ ++ RR+ + +L+ G + + F V GP+D+P+EGG +K+ + L
Sbjct: 1 AGSAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFL 60
Query: 58 PEHYPFKSPSIGFMNKMYHPNID 80
PE YP +P + FM K+YHPN+D
Sbjct: 61 PEEYPMAAPKVRFMTKIYHPNVD 83
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting,
ligase, alternative splicing, cytoplasm, UBL
conjugation, UBL conjugation pathway; 1.86A {Homo
sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Length = 253
Score = 81.9 bits (202), Expect = 2e-20
Identities = 23/53 (43%), Positives = 34/53 (64%)
Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVS 83
E + GP DTPYEGG +++ + +PE YPF P + F+ K++HPNI V+
Sbjct: 89 FTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVT 141
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure,
ATP-binding, isopeptide BO ligase, nucleotide-binding,
UBL conjugation pathway; 1.80A {Homo sapiens} PDB:
3k9p_A 1yla_A 2o25_A
Length = 201
Score = 80.5 bits (199), Expect = 3e-20
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 1 MSSASAGNRRMNI--DVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVR 54
M++ A R +V+K E+ + E + GP DTPYEGG +++
Sbjct: 2 MAN-IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLE 60
Query: 55 VHLPEHYPFKSPSIGFMNKMYHPNIDEVS 83
+ +PE YPF P + F+ K++HPNI V+
Sbjct: 61 IKIPETYPFNPPKVRFITKIWHPNISSVT 89
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase,
UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens}
SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Length = 165
Score = 78.9 bits (195), Expect = 6e-20
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 1 MSSASAGNRRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVH 56
+ S +R++ ++ L + + + GP D+PY+GGV+ + +H
Sbjct: 14 VPRGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIH 73
Query: 57 LPEHYPFKSPSIGFMNKMYHPNID 80
P YPFK P + F ++YHPNI+
Sbjct: 74 FPTDYPFKPPKVAFTTRIYHPNIN 97
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Length = 149
Score = 78.5 bits (194), Expect = 6e-20
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 6 AGNRRMNIDVIKLIESKHEGTTLKGLKE-----FCVKFFGPRDTPYEGGVWKVRVHLPEH 60
+ +R+ ++ + + TL+ + E F GP TPYEGG + V + +P
Sbjct: 1 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPME 60
Query: 61 YPFKSPSIGFMNKMYHPNIDEVS 83
YPFK P + F K+YHPNI V+
Sbjct: 61 YPFKPPKMQFDTKVYHPNISSVT 83
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo
sapiens} SCOP: d.20.1.1
Length = 158
Score = 78.5 bits (194), Expect = 8e-20
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 2 SSASAGNRRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHL 57
+ R + +V L +G + L + V GP TPY GG++++++ L
Sbjct: 9 NLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLL 68
Query: 58 PEHYPFKSPSIGFMNKMYHPNID 80
+ +P P F+ K++HPN+
Sbjct: 69 GKDFPASPPKGYFLTKIFHPNVG 91
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC,
ligase; 1.90A {Plasmodium yoelii}
Length = 216
Score = 79.0 bits (195), Expect = 2e-19
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 2 SSASAGNRRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHL 57
S R+ ++ + + E+ GP TPYEGG + + + +
Sbjct: 19 FQGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITI 78
Query: 58 PEHYPFKSPSIGFMNKMYHPNID 80
P YP+ P I F+ K++HPNI
Sbjct: 79 PNDYPYNPPKIKFVTKIWHPNIS 101
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin
carrier protein, thioester ligase; 2.00A {Spisula
solidissima} SCOP: d.20.1.1
Length = 156
Score = 77.3 bits (191), Expect = 2e-19
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 1 MSSASAGN---RRMNIDVIKLIESKHEGTT--LKG--LKEFCVKFFGPRDTPYEGGVWKV 53
M+++ + +R+ ++ L+ S G T G L ++ GP+DT YE +K+
Sbjct: 1 MTTSKERHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKL 60
Query: 54 RVHLPEHYPFKSPSIGFMNKMYHPNIDE 81
+ P YP+K P + F +HPN+D+
Sbjct: 61 TLEFPSDYPYKPPVVKFTTPCWHPNVDQ 88
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome
pathway, structural genomics, protein structure
initiative; 1.10A {Caenorhabditis elegans} SCOP:
d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B*
4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A
3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A
...
Length = 150
Score = 77.3 bits (191), Expect = 2e-19
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 80
L + GP ++PY+GGV+ + +H P YPFK P + F ++YHPNI+
Sbjct: 33 LFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 82
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural
genomics consortium, ubiquit ubiquitin-conjugating
enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP:
d.20.1.1
Length = 166
Score = 77.3 bits (191), Expect = 2e-19
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 1 MSSASAGNRRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVH 56
+ A +R+N ++ L + + + + GP D+PY GGV+ + +H
Sbjct: 17 LYFQGA-LKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIH 75
Query: 57 LPEHYPFKSPSIGFMNKMYHPNID 80
P YPFK P + F K+YHPNI+
Sbjct: 76 FPSDYPFKPPKVNFTTKIYHPNIN 99
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas
conjugation pathway, structural genomics, structural
genomi consortium; 1.85A {Plasmodium falciparum} PDB:
3e95_A
Length = 149
Score = 76.9 bits (190), Expect = 3e-19
Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 80
+ F + GP TPYEGG +K+ + LPE YP + P + F+ K+YHPNID
Sbjct: 30 YRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNID 79
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721,
structural genomics, structural genomics consortium,
SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Length = 193
Score = 77.9 bits (192), Expect = 3e-19
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVS 83
+ + GP TPYEGG + + + +P YP+ P + F+ K++HPNI +
Sbjct: 74 IHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQT 126
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme;
structural genomics consortium, HSCP150, ligase, SGC;
2.00A {Homo sapiens} SCOP: d.20.1.1
Length = 169
Score = 77.4 bits (191), Expect = 3e-19
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 4 ASAGNRRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHLPE 59
+ R+ ++ L G T + + + G +TPYE GV+K+ V +PE
Sbjct: 2 SMQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPE 61
Query: 60 HYPFKSPSIGFMNKMYHPNIDE 81
YPF+ P I F+ +YHPNID
Sbjct: 62 RYPFEPPQIRFLTPIYHPNIDS 83
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation
pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Length = 194
Score = 77.9 bits (192), Expect = 4e-19
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 1 MSSASAGNRRMNIDVIKLIESKHEGTT--LKG--LKEFCVKFFGPRDTPYEGGVWKVRVH 56
+ S SA +R+ ++ + + KG + E+ GP + YEGGV+ + +
Sbjct: 45 LLSTSA--KRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDIT 102
Query: 57 LPEHYPFKSPSIGFMNKMYHPNIDE 81
YPFK P + F ++YH NI+
Sbjct: 103 FTPEYPFKPPKVTFRTRIYHCNINS 127
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens}
SCOP: d.20.1.1
Length = 179
Score = 77.0 bits (190), Expect = 5e-19
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 2 SSASAGNRRMNIDVIKLIESKHEGTT--LKG--LKEFCVKFFGPRDTPYEGGVWKVRVHL 57
++ +R+ +++ L+ S +G + + L ++ G T YE +K+ +
Sbjct: 26 AARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEF 85
Query: 58 PEHYPFKSPSIGFMNKMYHPNIDE 81
P YP+ +P++ F+ YHPN+D
Sbjct: 86 PSGYPYNAPTVKFLTPCYHPNVDT 109
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Length = 138
Score = 75.4 bits (186), Expect = 7e-19
Identities = 16/88 (18%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 1 MSSASAGNRRMNIDVIKLIESKHEGTTLKGLK--------EFCVKFFGPRDTPYEGGVWK 52
MS N R+ ++ K + + GL ++ GP + +E ++
Sbjct: 2 MSKVPR-NFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYS 60
Query: 53 VRVHLPEHYPFKSPSIGFMNKMYHPNID 80
+ + +YP P + F++K+ P ++
Sbjct: 61 LSIDCGPNYPDSPPKVTFISKINLPCVN 88
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing,
nuclear protein, UBL conjugation pathway,ubiquitin,
ligase, structural genomics; 1.69A {Homo sapiens} SCOP:
d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Length = 160
Score = 75.9 bits (187), Expect = 1e-18
Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 8/88 (9%)
Query: 1 MSSASAGNRRMNIDVIKLIESKHEGTTLKGLKE--------FCVKFFGPRDTPYEGGVWK 52
N R+ ++ + + +GT GL++ + GP T YE ++
Sbjct: 20 TGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYS 79
Query: 53 VRVHLPEHYPFKSPSIGFMNKMYHPNID 80
+++ YP P + F+ K+ ++
Sbjct: 80 LKIECGPKYPEAPPFVRFVTKINMNGVN 107
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme
domain, E2 domain, ligase-ligas inhibitor complex; HET:
U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Length = 183
Score = 76.3 bits (188), Expect = 1e-18
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 1 MSSASAGNRRMNIDVIKLIESKHEGTT--LKG---LKEFCVKFFGPRDTPYEGGVWKVRV 55
M S S+ + + +++ L E EG L L + V FGP +T YEGG +K R+
Sbjct: 3 MGSPSS-QKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARL 61
Query: 56 HLPEHYPFKSPSIGFMNKMYHPNIDE 81
P YP+ P+ F+ KM+HPNI E
Sbjct: 62 KFPIDYPYSPPAFRFLTKMWHPNIYE 87
Score = 57.4 bits (139), Expect = 2e-11
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
Y GG +K R+ P YP+ P+ F+ KM+HPNI E
Sbjct: 52 YEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYE 87
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating
enzyme variant, UBC13, HUBC13, polyubiquitination,
ligase, signaling protein; NMR {Homo sapiens}
Length = 170
Score = 74.8 bits (184), Expect = 3e-18
Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 8/88 (9%)
Query: 1 MSSASAGNRRMNIDVIKLIESKHEGTTLKGLK--------EFCVKFFGPRDTPYEGGVWK 52
N R+ ++ + + +GT GL+ + GP T YE ++
Sbjct: 30 KGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYS 89
Query: 53 VRVHLPEHYPFKSPSIGFMNKMYHPNID 80
+++ YP P + F+ K+ ++
Sbjct: 90 LKIECGPKYPEAPPFVRFVTKINMNGVN 117
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle,
nucleotide-binding, UBL CON pathway; 2.50A {Homo
sapiens} PDB: 2edi_A
Length = 167
Score = 74.3 bits (183), Expect = 4e-18
Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 6/85 (7%)
Query: 2 SSASAGNRRMNIDVIKLIESKHEG--TTLKG---LKEFCVKFFGPRDTPYEGGVWKVRVH 56
S ++ + +V +L + L F + P + Y+GG ++
Sbjct: 10 RRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQL-TVTPDEGYYQGGKFQFETE 68
Query: 57 LPEHYPFKSPSIGFMNKMYHPNIDE 81
+P+ Y P + + K++HPNI E
Sbjct: 69 VPDAYNMVPPKVKCLTKIWHPNITE 93
Score = 57.4 bits (139), Expect = 1e-11
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 86 FYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
+Y GG ++ +P+ Y P + + K++HPNI E
Sbjct: 57 YYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITE 93
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1;
inhibition, hydrolase-ligase complex; 3.30A {Homo
sapiens} PDB: 4ddi_A
Length = 399
Score = 77.3 bits (190), Expect = 5e-18
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 4 ASAGNRRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHLPE 59
+ +R++ ++ L + + + GP D+PY+GGV+ + +H P
Sbjct: 1 GAMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT 60
Query: 60 HYPFKSPSIGFMNKMYHPNID 80
YPFK P + F ++YHPNI+
Sbjct: 61 DYPFKPPKVAFTTRIYHPNIN 81
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein
complex, ubiquitin conjugating ENZY complex, peroxisomal
protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A
2y9o_A
Length = 172
Score = 74.0 bits (182), Expect = 6e-18
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMN-KMYHPNIDEVS 83
L ++ GP DTPYE +++ + +P YP P I FM + H N+ +
Sbjct: 47 LSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSAT 100
Score = 60.5 bits (147), Expect = 9e-13
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMN-KMYHPNIDEVSGE 126
Y +++ + +P YP P I FM + H N+ +GE
Sbjct: 62 YENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGE 102
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation
pathway, structural genomics, structural genomics
consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1
PDB: 1pzv_A
Length = 172
Score = 73.6 bits (181), Expect = 7e-18
Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 81
L + V GP DT YEGGV+K + P+ YP + P + F+ +++HPN+D+
Sbjct: 47 LYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDK 97
Score = 57.0 bits (138), Expect = 2e-11
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
Y GGV+K + P+ YP + P + F+ +++HPN+D+
Sbjct: 62 YEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDK 97
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure,
elongated shape, E3 ubiquitin ligase, E2 ubiquitin
conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1
PDB: 1fbv_C* 3sy2_C 3sqv_C
Length = 154
Score = 73.1 bits (180), Expect = 9e-18
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 40 GPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 81
P + PY+ G +++ ++ P YPFK P I F K+YHPNIDE
Sbjct: 40 VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE 81
Score = 58.8 bits (143), Expect = 3e-12
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
Y G +++ ++ P YPFK P I F K+YHPNIDE
Sbjct: 46 YDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE 81
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics,
structural genomics consortium, unknown function; 1.86A
{Plasmodium vivax} SCOP: d.20.1.1
Length = 125
Score = 71.9 bits (177), Expect = 1e-17
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 1 MSSASAGNRRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVH 56
M +A+ R+ ++ + + TL ++ + VK+ G +T Y V+K+++
Sbjct: 4 MGNAN---YRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKII 60
Query: 57 LPEHYPFKSPSIGFMNK-MYHPNIDE 81
P+ YP K P + F+ K H ++
Sbjct: 61 FPDDYPLKPPIVYFLQKPPKHTHVYS 86
Score = 52.2 bits (126), Expect = 5e-10
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNK-MYHPNIDE 122
Y V+K+++ P+ YP K P + F+ K H ++
Sbjct: 50 YANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYS 86
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A
{Saccharomyces cerevisiae} PDB: 3tdi_C
Length = 190
Score = 73.6 bits (181), Expect = 1e-17
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 8/88 (9%)
Query: 2 SSASAGNRRMNIDVIKLIESKHEGTTLKGLKEFCVKF--------FGPRDTPYEGGVWKV 53
+ SA R+ D+ L + + + P + Y G
Sbjct: 25 PNLSAARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINF 84
Query: 54 RVHLPEHYPFKSPSIGFMNKMYHPNIDE 81
+ E YP + P + + K++HPNID
Sbjct: 85 NLDFNEVYPIEPPKVVCLKKIFHPNIDL 112
Score = 56.3 bits (136), Expect = 5e-11
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 86 FYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
+Y G + E YP + P + + K++HPNID
Sbjct: 76 YYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDL 112
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens}
SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Length = 155
Score = 72.3 bits (178), Expect = 2e-17
Identities = 19/42 (45%), Positives = 24/42 (57%)
Query: 40 GPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 81
P PY + +R+ P YPFK P I F K+YHPN+DE
Sbjct: 42 LPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE 83
Score = 58.4 bits (142), Expect = 4e-12
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
Y+ + +R+ P YPFK P I F K+YHPN+DE
Sbjct: 48 YHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE 83
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular
complex, ubiquitin, ATP, conformational change,
thioester, switch, adenylation, protein turnover,
ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Length = 180
Score = 72.4 bits (178), Expect = 3e-17
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 2 SSASAGNRRMNIDVIKLIESKHEGTTLKG---LKEFCVKFFGPRDTPYEGGVWKVRVHLP 58
ASA R+ D+ +L K + L F + P + Y+ G + +
Sbjct: 22 KKASAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVG 80
Query: 59 EHYPFKSPSIGFMNKMYHPNIDE 81
+ YP P + +YHPNID
Sbjct: 81 QGYPHDPPKVKCETMVYHPNIDL 103
Score = 56.6 bits (137), Expect = 3e-11
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 86 FYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
FY G + + + YP P + +YHPNID
Sbjct: 67 FYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDL 103
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural
genomics consortium, (SGC), ligase; 1.82A {Homo sapiens}
SCOP: d.20.1.1
Length = 136
Score = 71.2 bits (175), Expect = 3e-17
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query: 1 MSSASAGNRRMNIDVIKLIESKHEGTTLKG------LKEFCVKFFGPRDTPYEGGVWKVR 54
M+S +R+ +++ L G TL + ++ V G T YEG +++
Sbjct: 20 MASMQ---KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLL 76
Query: 55 VHLPEHYPFKSPSIGFMNKM--YHPNID 80
YPF SP + F + HP++
Sbjct: 77 FKFSSRYPFDSPQVMFTGENIPVHPHVY 104
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha,
ligase, UBL conjugation pathway, endo reticulum,
membrane, metal-binding; 1.80A {Homo sapiens} PDB:
3fsh_A 2cyx_A 2kly_A
Length = 164
Score = 72.0 bits (177), Expect = 3e-17
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 81
E+ GP DT +E GV+ + P YP P + F +M+HPNI
Sbjct: 33 FFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYP 83
Score = 55.4 bits (134), Expect = 6e-11
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
+ GV+ + P YP P + F +M+HPNI
Sbjct: 48 FEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYP 83
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics
consortium, SGC, ubiquitin- conjugating enzyme; 2.18A
{Homo sapiens} SCOP: d.20.1.1
Length = 169
Score = 72.0 bits (177), Expect = 3e-17
Identities = 20/87 (22%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 1 MSSASAGNRRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVH 56
M + ++ D L E+ ++G T K + E+ V+ G +++ ++G V+++ +H
Sbjct: 20 MHGRAY--LLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIH 77
Query: 57 LPEHYPFKSPSIGFMNKMYHPNIDEVS 83
Y + P + F+ +HPN+D +
Sbjct: 78 FTSEYNYAPPVVKFITIPFHPNVDPHT 104
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation;
2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 169
Score = 72.0 bits (177), Expect = 3e-17
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 1 MSSASAGNRRMNIDVIKLIESKHEGTT--LKG--LKEFCVKFFGPRDTPYEGGVWKVRVH 56
MS+ + RR+ D ++ E G + + + GP DTPYE G +++ +
Sbjct: 1 MSTPAR--RRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLE 58
Query: 57 LPEHYPFKSPSIGFMNKMYHPNID 80
E YP K P + F+++M+HPN+
Sbjct: 59 FDEEYPNKPPHVKFLSEMFHPNVY 82
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme
E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Length = 160
Score = 71.6 bits (176), Expect = 3e-17
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 4 ASAGNRRMNIDVIKLIESKHEGTTLKG---LKEFCVKFFGPRDTPYEGGVWKVRVHLPEH 60
ASA R+ D+ +L K + L F + P + Y+ G + + +
Sbjct: 4 ASAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQG 62
Query: 61 YPFKSPSIGFMNKMYHPNIDE 81
YP P + +YHPNID
Sbjct: 63 YPHDPPKVKCETMVYHPNIDL 83
Score = 56.5 bits (137), Expect = 3e-11
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 86 FYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
FY G + + + YP P + +YHPNID
Sbjct: 47 FYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDL 83
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation,
ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1
PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Length = 152
Score = 71.5 bits (176), Expect = 4e-17
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 1 MSSASAGNRRMNIDVIKLIESKHEGTT--LKG--LKEFCVKFFGPRDTPYEGGVWKVRVH 56
MS+ + +R+ D +L + G + + + + FGP DTP++GG +K+ +
Sbjct: 1 MSTPAR--KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQ 58
Query: 57 LPEHYPFKSPSIGFMNKMYHPNIDE 81
E YP K P++ F+++M+HPNI
Sbjct: 59 FSEDYPNKPPTVRFVSRMFHPNIYA 83
Score = 53.4 bits (129), Expect = 3e-10
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
+ GG +K+ + E YP K P++ F+++M+HPNI
Sbjct: 48 WDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYA 83
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics,
PSI, protein structure initiative; 2.63A {Trypanosoma
cruzi}
Length = 167
Score = 71.7 bits (176), Expect = 5e-17
Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 31 LKEFCVKFFGPRDTPY--EGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 81
+ + +K P D+ Y G +++ V + YP + P++ F+ +Y P +
Sbjct: 49 IYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTG 101
Score = 55.9 bits (135), Expect = 4e-11
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 89 GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
G +++ V + YP + P++ F+ +Y P +
Sbjct: 68 GNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTG 101
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3,
crystallography, ligase; 1.75A {Saccharomyces
cerevisiae} PDB: 2eke_A 3ong_B
Length = 157
Score = 71.1 bits (175), Expect = 6e-17
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 80
L+++ G T + GGV+ + V P YP K P + F YHPN+
Sbjct: 38 LQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVY 87
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown
function, structural genomics consortium, SGC; 2.80A
{Plasmodium falciparum 3D7}
Length = 136
Score = 70.4 bits (173), Expect = 6e-17
Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNK-MYHPNIDE 81
++ + V++ G +T Y V+K+++ P++YP K P + F+ K H ++
Sbjct: 49 IRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYS 100
Score = 52.3 bits (126), Expect = 5e-10
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNK-MYHPNIDE 122
Y V+K+++ P++YP K P + F+ K H ++
Sbjct: 64 YANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYS 100
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation,
ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP:
d.20.1.1
Length = 165
Score = 70.5 bits (173), Expect = 1e-16
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 81
+ + GP DTPY GV+ ++ P+ YP P + F + HPNI
Sbjct: 34 IFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYP 84
Score = 54.7 bits (132), Expect = 1e-10
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
Y GV+ ++ P+ YP P + F + HPNI
Sbjct: 49 YADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYP 84
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small
ubiquitin like modifer, SMT3, ligase; 1.30A {Homo
sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A
1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A
3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Length = 161
Score = 70.0 bits (172), Expect = 1e-16
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 80
L + G + TP+EGG++K+R+ + YP P F ++HPN+
Sbjct: 41 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVY 90
Score = 52.7 bits (127), Expect = 6e-10
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 121
+ GG++K+R+ + YP P F ++HPN+
Sbjct: 56 WEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVY 90
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein
interaction, protein ligase complex; HET: DNA; 1.90A
{Schizosaccharomyces pombe}
Length = 163
Score = 69.3 bits (170), Expect = 3e-16
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 80
L + V G T +EGG++K+ + PE YP + P F ++HPN+
Sbjct: 44 LMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVY 93
Score = 51.9 bits (125), Expect = 1e-09
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 121
+ GG++K+ + PE YP + P F ++HPN+
Sbjct: 59 WEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVY 93
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G
structural genomics consortium, SGC, ligase; 2.40A
{Plasmodium falciparum} PDB: 3e95_C
Length = 156
Score = 69.3 bits (170), Expect = 3e-16
Identities = 11/50 (22%), Positives = 23/50 (46%)
Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 80
L + FG T +E ++ + + ++YP P++ F K+ +D
Sbjct: 54 LSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVD 103
Score = 51.6 bits (124), Expect = 2e-09
Identities = 6/35 (17%), Positives = 17/35 (48%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 121
+ ++ + + ++YP P++ F K+ +D
Sbjct: 69 FENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVD 103
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum,
ligase, UBL conjugation pathway, structural genomics
consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Length = 187
Score = 66.0 bits (161), Expect = 1e-14
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 38 FFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 80
GP TPYEGG + ++ P +PFK PSI + +
Sbjct: 50 VRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCN 92
Score = 49.4 bits (118), Expect = 2e-08
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 121
Y GG + ++ P +PFK PSI + +
Sbjct: 58 YEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCN 92
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase,
protease inhibitor, thiol protease inhibitor, UBL
conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Length = 323
Score = 53.9 bits (129), Expect = 8e-10
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 39 FGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYH-----PNIDE 81
GP DTPY G ++ V+ P+ YP P + H PN+
Sbjct: 117 TGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYN 164
Score = 37.7 bits (87), Expect = 4e-04
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 12/57 (21%)
Query: 78 NIDEVSAVF-------YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYH-----PNIDE 122
+D + + Y G ++ V+ P+ YP P + H PN+
Sbjct: 108 RLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYN 164
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating
enzyme, structural genomics consortium ,SGC; 1.80A {Homo
sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Length = 186
Score = 43.8 bits (103), Expect = 2e-06
Identities = 7/56 (12%), Positives = 16/56 (28%), Gaps = 12/56 (21%)
Query: 36 VKFFG-PRDTPYEGGV-----------WKVRVHLPEHYPFKSPSIGFMNKMYHPNI 79
VK D+P + + +++PF P + + +
Sbjct: 64 VKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGY 119
Score = 40.7 bits (95), Expect = 2e-05
Identities = 4/38 (10%), Positives = 11/38 (28%)
Query: 89 GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE 126
+ +++PF P + + + G
Sbjct: 88 IEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGA 125
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein,
isocitrate/isopropylmalate dehydrogenase-like fold,
oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus
thiooxidans}
Length = 429
Score = 29.6 bits (67), Expect = 0.25
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 27 TLKGLKEFCVKFFGPRDTPYEGGVWKVRVHL 57
T+ ++E+ V GP +TP GG+ + V +
Sbjct: 88 TMAAIREYKVAIKGPLETPVGGGIRSLNVAM 118
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 0.44
Identities = 6/22 (27%), Positives = 9/22 (40%), Gaps = 1/22 (4%)
Query: 24 EGTTLKGLKEFCVKFFGPRDTP 45
E LK L + +K + P
Sbjct: 18 EKQALKKL-QASLKLYADDSAP 38
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic
acid cycle, oxidoreductase, protein phosphorylation,
NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP:
c.77.1.1
Length = 423
Score = 28.8 bits (65), Expect = 0.45
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 27 TLKGLKEFCVKFFGPRDTPYEGGVWKVRVHL 57
TL ++E+ + GP TP GG+ + V L
Sbjct: 79 TLDVIREYFIAIKGPLTTPVGGGIRSLNVAL 109
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: d.20.1.3
Length = 152
Score = 27.7 bits (61), Expect = 0.82
Identities = 7/36 (19%), Positives = 9/36 (25%), Gaps = 1/36 (2%)
Query: 33 EFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSI 68
F + + LP YP P I
Sbjct: 58 YFTINMNLDVSDEKMAMF-SLACILPFKYPAVLPEI 92
Score = 27.3 bits (60), Expect = 0.92
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 6/46 (13%)
Query: 64 KSPSIGFMNKMYHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSI 109
+S + F M DE A+F + LP YP P I
Sbjct: 53 RSSKVYFTINMNLDVSDEKMAMF------SLACILPFKYPAVLPEI 92
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta
homodimer, ligase; HET: FYA; 2.50A {Thermus
thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A
1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A*
2amc_A*
Length = 350
Score = 27.6 bits (62), Expect = 1.0
Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 24/66 (36%)
Query: 28 LKG-LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPS----IGFMNK--------- 73
LKG + E FGP D+ KVR P ++PF P + +
Sbjct: 233 LKGAIYELAQALFGP-DS-------KVRFQ-PVYFPFVEPGAQFAVWWPEGGKWLELGGA 283
Query: 74 -MYHPN 78
M HP
Sbjct: 284 GMVHPK 289
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.20.1.3
Length = 154
Score = 27.0 bits (59), Expect = 1.6
Identities = 4/17 (23%), Positives = 10/17 (58%)
Query: 52 KVRVHLPEHYPFKSPSI 68
++V +P YP+ + +
Sbjct: 78 DLQVTMPHSYPYLALQL 94
Score = 27.0 bits (59), Expect = 1.6
Identities = 4/17 (23%), Positives = 10/17 (58%)
Query: 93 KVRVHLPEHYPFKSPSI 109
++V +P YP+ + +
Sbjct: 78 DLQVTMPHSYPYLALQL 94
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 27.3 bits (60), Expect = 1.6
Identities = 7/69 (10%), Positives = 14/69 (20%), Gaps = 28/69 (40%)
Query: 28 LKG-LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHY-PFKSPSI-----GFMNK------- 73
K + +F + E + +P + K
Sbjct: 265 GKAIAEGLLSQFGFT----------NFKFIPDEKKSKYYTPETQTEVYAYHPKLKEWLEV 314
Query: 74 ----MYHPN 78
+Y P
Sbjct: 315 ATFGVYSPV 323
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 26.5 bits (58), Expect = 3.2
Identities = 7/69 (10%), Positives = 14/69 (20%), Gaps = 28/69 (40%)
Query: 28 LKG-LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHY-PFKSPSI-----GFMNK------- 73
K + +F + E + +P + K
Sbjct: 265 GKAIAEGLLSQFGFT----------NFKFIPDEKKSKYYTPETQTEVYAYHPKLKEWLEV 314
Query: 74 ----MYHPN 78
+Y P
Sbjct: 315 ATFGVYSPV 323
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative
metabolism, allostery, decarboxylase, allosteric enzyme,
magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A
3blv_A*
Length = 349
Score = 26.0 bits (58), Expect = 3.7
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 13/65 (20%)
Query: 27 TLKGLKEFCVKFFGPRDTP-YEGGVWKVRVHLPEHY-------PFKS-PSIGFMNKMYHP 77
++ LK + G TP + G + V L + FKS + K P
Sbjct: 66 AVESLKRNKIGLKGLWHTPADQTGHGSLNVALRKQLDIYANVALFKSLKGV----KTRIP 121
Query: 78 NIDEV 82
+ID +
Sbjct: 122 DIDLI 126
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP;
3.02A {Escherichia coli}
Length = 327
Score = 25.6 bits (57), Expect = 4.6
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 10/41 (24%)
Query: 28 LKG-LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPS 67
LKG L +F FF D ++R P ++PF PS
Sbjct: 223 LKGTLHDFLRNFFEE-DL-------QIRFR-PSYFPFTEPS 254
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 128
Score = 24.8 bits (54), Expect = 7.3
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 52 KVRVHLPEHYPFKSPSI 68
++ HLP +YP P I
Sbjct: 59 ELVFHLPVNYPSCLPGI 75
Score = 24.8 bits (54), Expect = 7.3
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 93 KVRVHLPEHYPFKSPSI 109
++ HLP +YP P I
Sbjct: 59 ELVFHLPVNYPSCLPGI 75
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.444
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,071,410
Number of extensions: 116199
Number of successful extensions: 410
Number of sequences better than 10.0: 1
Number of HSP's gapped: 400
Number of HSP's successfully gapped: 123
Length of query: 126
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 44
Effective length of database: 4,412,271
Effective search space: 194139924
Effective search space used: 194139924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)