RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11956
(126 letters)
>d2z5da1 d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 H [TaxId: 9606]}
Length = 152
Score = 80.5 bits (198), Expect = 4e-21
Identities = 62/118 (52%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
Query: 5 SAGNRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFK 64
S G RRM+ DV+KLIESKHE T L GL EF VKF+GP+ TPYEGGVWKVRV LP+ YPFK
Sbjct: 2 SPGKRRMDTDVVKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFK 61
Query: 65 SPSIGFMNKMYHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
SPSIGFMNK++HPNIDE S + + + +PN +
Sbjct: 62 SPSIGFMNKIFHPNIDEASGTVCL--DVINQTWTALYDLTNIFESFLPQLLAYPNPID 117
>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC
{Leishmania major [TaxId: 5664]}
Length = 158
Score = 70.1 bits (171), Expect = 5e-17
Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 2/115 (1%)
Query: 8 NRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPS 67
NRR +D ++L S + + EF V+F GP TPYE G W + V LP YPFKSPS
Sbjct: 2 NRRREMDYMRLCNSTRKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPS 61
Query: 68 IGFMNKMYHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
IGF N++ HPN+DE S + P + + + +PN +
Sbjct: 62 IGFCNRILHPNVDERSGSVCLD--VINQTWTPMYQLENIFDVFLPQLLRYPNPSD 114
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 G1 [TaxId: 9606]}
Length = 125
Score = 54.3 bits (130), Expect = 3e-11
Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 81
L + V GP DT YEGGV+K + P+ YP + P + F+ +++HPN+D+
Sbjct: 29 LYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDK 79
Score = 40.8 bits (95), Expect = 5e-06
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
Y GGV+K + P+ YP + P + F+ +++HPN+D+
Sbjct: 44 YEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDK 79
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId:
4932]}
Length = 153
Score = 54.0 bits (129), Expect = 7e-11
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 4 ASAGNRRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHLPE 59
++ RR+ D ++ E G + + + GP DTPYE G +++ + E
Sbjct: 1 STPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDE 60
Query: 60 HYPFKSPSIGFMNKMYHPNIDEVSAVFY 87
YP K P + F+++M+HPN+ +
Sbjct: 61 EYPNKPPHVKFLSEMFHPNVYANGEICL 88
Score = 38.9 bits (90), Expect = 3e-05
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 64 KSPSIGFMNKMYHPNIDEVSAVF-------YYGGVWKVRVHLPEHYPFKSPSIGFMNKMY 116
+ G N+ +A+ Y G +++ + E YP K P + F+++M+
Sbjct: 17 EDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMF 76
Query: 117 HPNIDE 122
HPN+
Sbjct: 77 HPNVYA 82
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch8 [TaxId: 9606]}
Length = 148
Score = 52.5 bits (125), Expect = 3e-10
Identities = 21/122 (17%), Positives = 46/122 (37%), Gaps = 8/122 (6%)
Query: 5 SAGNRRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEH 60
S +R+ ++ ++ + + E+ GP + YEGGV+ + +
Sbjct: 1 STSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPD 60
Query: 61 YPFKSPSIGFMNKMYHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 120
YPFK P + F ++YH NI+ + ++ + + + + N
Sbjct: 61 YPFKPPKVTFRTRIYHCNINSQGVICLD----ILKDNWSPALTISKVLLSICSLLTDCNP 116
Query: 121 DE 122
+
Sbjct: 117 AD 118
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC
{Caenorhabditis elegans, E2 2 [TaxId: 6239]}
Length = 147
Score = 51.3 bits (122), Expect = 6e-10
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 9 RRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFK 64
+R+ ++ L + L + GP ++PY+GGV+ + +H P YPFK
Sbjct: 4 KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 63
Query: 65 SPSIGFMNKMYHPNIDE 81
P + F ++YHPNI+
Sbjct: 64 PPKVAFTTRIYHPNINS 80
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 M [TaxId: 9606]}
Length = 157
Score = 51.2 bits (122), Expect = 9e-10
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Query: 4 ASAGNRRMNIDVIKLIESKHEGTTLKG---LKEFCVKFFGPRDTPYEGGVWKVRVHLPEH 60
ASA R+ D+ +L K + L F + P + Y+ G + + +
Sbjct: 1 ASAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKL-VICPDEGFYKSGKFVFSFKVGQG 59
Query: 61 YPFKSPSIGFMNKMYHPNIDEVSAVFYY 88
YP P + +YHPNID V
Sbjct: 60 YPHDPPKVKCETMVYHPNIDLEGNVCLN 87
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}
Length = 164
Score = 51.3 bits (122), Expect = 1e-09
Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 14/127 (11%)
Query: 9 RRMNIDVIKLIESKHEGTTLKGLKE-----FCVKFFGPRDTPYEGGVWKVRVHLPEHYPF 63
+R+ ++ +LI+ G E + GP DTPY GV+ ++ P+ YP
Sbjct: 6 KRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPL 65
Query: 64 KSPSIGFMNKMYHPNIDE--VSAVFYYGGVWKVRVHLPEHYPFKSPS-------IGFMNK 114
P + F + HPNI + SP + M+
Sbjct: 66 SPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSM 125
Query: 115 MYHPNID 121
+ PNI+
Sbjct: 126 LSEPNIE 132
Score = 37.5 bits (86), Expect = 1e-04
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 86 FYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
Y GV+ ++ P+ YP P + F + HPNI
Sbjct: 47 PYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYP 83
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}
Length = 152
Score = 50.5 bits (120), Expect = 1e-09
Identities = 28/82 (34%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 4 ASAGNRRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHLPE 59
A++ +R+ + KL+ G T + L+ F V GP +PYE G++++ ++LP+
Sbjct: 1 AASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 60
Query: 60 HYPFKSPSIGFMNKMYHPNIDE 81
YP ++P + F+ K+YHPNID
Sbjct: 61 DYPMEAPKVRFLTKIYHPNIDR 82
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode
(Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}
Length = 161
Score = 50.5 bits (120), Expect = 2e-09
Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 81
+ ++ V GP DT YEGG +K + P YP K P + F+++++HPNID+
Sbjct: 30 IYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDK 80
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 49.3 bits (117), Expect = 2e-09
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 11/89 (12%)
Query: 1 MSSASAGNRRMNIDVIKLIESKHEGTTLK------GLKEFCVKFFGPRDTPYEGGVWKVR 54
M+S +R+ +++ L G TL + ++ V G T YEG +++
Sbjct: 1 MASMQ---KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLL 57
Query: 55 VHLPEHYPFKSPSIGFMNK--MYHPNIDE 81
YPF SP + F + HP++
Sbjct: 58 FKFSSRYPFDSPQVMFTGENIPVHPHVYS 86
>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 141
Score = 48.0 bits (114), Expect = 1e-08
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 7/58 (12%)
Query: 30 GLKEFCVKFFGPRDTPYEGGVWK--VRVHLPEHYPFKSPSI-----GFMNKMYHPNID 80
G + G PY G + + + L + YP+ P M ++D
Sbjct: 45 GSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVD 102
Score = 34.2 bits (78), Expect = 0.001
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 7/44 (15%)
Query: 85 VFYYGGVWK--VRVHLPEHYPFKSPSI-----GFMNKMYHPNID 121
V Y G + + + L + YP+ P M ++D
Sbjct: 59 VPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVD 102
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}
Length = 139
Score = 47.7 bits (113), Expect = 1e-08
Identities = 11/50 (22%), Positives = 22/50 (44%)
Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 80
L + GP T YE ++ +++ YP P + F+ K+ ++
Sbjct: 38 LTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVN 87
Score = 37.3 bits (86), Expect = 1e-04
Identities = 7/40 (17%), Positives = 18/40 (45%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE 126
Y ++ +++ YP P + F+ K+ ++ +G
Sbjct: 53 YENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGV 92
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc9 [TaxId: 9606]}
Length = 156
Score = 48.2 bits (114), Expect = 1e-08
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVFYYGG 90
L + G + TP+EGG++K+R+ + YP P F ++HPN+ V
Sbjct: 36 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSL--S 93
Query: 91 VWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
+ + K +G + PNI +
Sbjct: 94 ILEEDKDWRPAITIKQILLGIQELLNEPNIQD 125
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam
(Spisula solidissima), E-2C [TaxId: 6584]}
Length = 156
Score = 47.1 bits (111), Expect = 3e-08
Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 23/135 (17%)
Query: 1 MSSASAGN---RRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKV 53
M+++ + +R+ ++ L+ S G T L ++ GP+DT YE +K+
Sbjct: 1 MTTSKERHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKL 60
Query: 54 RVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVFY------YGGVWKVRVHLPEHYPFKSP 107
+ P YP+K P + F +HPN+D+ + + + VR L
Sbjct: 61 TLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTIL--------- 111
Query: 108 SIGFMNKMYHPNIDE 122
+ + + PN
Sbjct: 112 -LSLQSLLGEPNNAS 125
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch10 [TaxId: 9606]}
Length = 146
Score = 46.3 bits (109), Expect = 4e-08
Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 14/122 (11%)
Query: 8 NRRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPF 63
+R+ +++ L+ S +G + L ++ G T YE +K+ + P YP+
Sbjct: 3 GKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPY 62
Query: 64 KSPSIGFMNKMYHPNIDEVSAVFYYGGVWKVRVHLPEHYP---FKSPSIGFMNKMYHPNI 120
+P++ F+ YHPN+ G + + + ++ + + + PNI
Sbjct: 63 NAPTVKFLTPCYHPNV-------DTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNI 115
Query: 121 DE 122
D
Sbjct: 116 DS 117
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721,
E2 domain {Toxoplasma gondii [TaxId: 5811]}
Length = 161
Score = 46.7 bits (110), Expect = 5e-08
Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 9/95 (9%)
Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVFYYGG 90
+ + GP TPYEGG + + + +P YP+ P + F+ K++HPN + G
Sbjct: 43 IHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPN------ISSQTG 96
Query: 91 VWKVRVHLPEHYPFKSPS---IGFMNKMYHPNIDE 122
+ + E P + + + P +
Sbjct: 97 AICLDILKHEWSPALTIRTALLSIQAMLADPVPTD 131
Score = 35.2 bits (80), Expect = 8e-04
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 54 RVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVF-------YYGGVWKVRVHLPEHYPFKS 106
R H E S S G ++ +I Y GG + + + +P YP+
Sbjct: 18 RAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNP 77
Query: 107 PSIGFMNKMYHPNIDEVSGE 126
P + F+ K++HPNI +G
Sbjct: 78 PKMKFVTKIWHPNISSQTGA 97
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa,
E2 domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 154
Score = 46.4 bits (109), Expect = 5e-08
Identities = 27/129 (20%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 1 MSSASAGNRRMNIDVIKLIESKHEGTTL-------KGLKEFCVKFFGPRDTPYEGGVWKV 53
M++ + +R+ + ++++S+ + E + GP DTPYEGG +++
Sbjct: 1 MANIAV--QRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQL 58
Query: 54 RVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMN 113
+ +PE YPF P + F+ K++HPNI V+ + ++ +
Sbjct: 59 EIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKD---QWAAAMTLRTVLLSLQA 115
Query: 114 KMYHPNIDE 122
+ D+
Sbjct: 116 LLAAAEPDD 124
Score = 37.1 bits (85), Expect = 2e-04
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 86 FYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE 126
Y GG +++ + +PE YPF P + F+ K++HPNI V+G
Sbjct: 50 PYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGA 90
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}
Length = 149
Score = 46.3 bits (109), Expect = 6e-08
Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 14/123 (11%)
Query: 8 NRRMNIDVIKLIESKHEGTTLKG-----LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYP 62
+R+ ++ + + TL+ + F GP TPYEGG + V + +P YP
Sbjct: 3 AKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYP 62
Query: 63 FKSPSIGFMNKMYHPNIDEVSAVF---YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPN 119
FK P + F K+YHPNI V+ W + L + P
Sbjct: 63 FKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALI------SLQALLQSPE 116
Query: 120 IDE 122
++
Sbjct: 117 PND 119
Score = 32.5 bits (73), Expect = 0.006
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 86 FYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVS 124
Y GG + V + +P YPFK P + F K+YHPNI V+
Sbjct: 45 PYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVT 83
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 U [TaxId: 9606]}
Length = 148
Score = 45.5 bits (107), Expect = 9e-08
Identities = 22/126 (17%), Positives = 53/126 (42%), Gaps = 7/126 (5%)
Query: 1 MSSASAGNRRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVH 56
M + ++ D L E+ ++G T K + E+ V+ G +++ ++G V+++ +H
Sbjct: 1 MHGRAY--LLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIH 58
Query: 57 LPEHYPFKSPSIGFMNKMYHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMY 116
Y + P + F+ +HPN+D + + + S + +
Sbjct: 59 FTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYT-LSSILLALQVMLS 117
Query: 117 HPNIDE 122
+P ++
Sbjct: 118 NPVLEN 123
Score = 28.2 bits (62), Expect = 0.17
Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 64 KSPSIGFMNKMYHPNIDEVSAVF-------YYGGVWKVRVHLPEHYPFKSPSIGFMNKMY 116
++ G K ++ E + G V+++ +H Y + P + F+ +
Sbjct: 18 ENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPF 77
Query: 117 HPNIDEVSGE 126
HPN+D +G+
Sbjct: 78 HPNVDPHTGQ 87
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc13 [TaxId: 9606]}
Length = 149
Score = 44.8 bits (105), Expect = 2e-07
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 9 RRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFK 64
RR+ + +L+ G + + F V GP+D+P+EGG +K+ + LPE YP
Sbjct: 5 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 64
Query: 65 SPSIGFMNKMYHPNIDE 81
+P + FM K+YHPN+D+
Sbjct: 65 APKVRFMTKIYHPNVDK 81
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 L6 [TaxId: 9606]}
Length = 150
Score = 44.4 bits (104), Expect = 3e-07
Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
Query: 38 FFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVFYYGGVWKVRVH 97
P PY + +R+ P YPFK P I F K+YHPN+DE + + +
Sbjct: 36 LLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSE---N 92
Query: 98 LPEHYPFKSPSIGFMNKMYHPNIDE 122
+ PNI E
Sbjct: 93 WKPCTKTCQVLEALNVLVNRPNIRE 117
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch7 [TaxId: 9606]}
Length = 144
Score = 44.4 bits (104), Expect = 3e-07
Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 15/123 (12%)
Query: 8 NRRMNIDVIKLIESKHEGTTLKGLKEFCVKFF----GPRDTPYEGGVWKVRVHLPEHYPF 63
+RR+ ++ ++ + + + E + + P + PY+ G +++ ++ P YPF
Sbjct: 1 SRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPF 60
Query: 64 KSPSIGFMNKMYHPNIDEVSAVFYYGGVWKVRVHLPEHYP----FKSPSIGFMNKMYHPN 119
K P I F K+YHPNI G + V E++ + + P
Sbjct: 61 KPPKITFKTKIYHPNI-------DEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQ 113
Query: 120 IDE 122
+
Sbjct: 114 PEH 116
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 T [TaxId: 9606]}
Length = 154
Score = 44.5 bits (104), Expect = 3e-07
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 8 NRRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPF 63
R+ ++ L G T + + + G +TPYE GV+K+ V +PE YPF
Sbjct: 4 ASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPF 63
Query: 64 KSPSIGFMNKMYHPNIDE 81
+ P I F+ +YHPNID
Sbjct: 64 EPPQIRFLTPIYHPNIDS 81
Score = 32.5 bits (73), Expect = 0.007
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
Y GV+K+ V +PE YPF+ P I F+ +YHPNID
Sbjct: 46 YEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDS 81
>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 J2 [TaxId: 9606]}
Length = 157
Score = 42.5 bits (99), Expect = 2e-06
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 9 RRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFK 64
+R+ D +++ + + + E+ GP TPYEGG + ++ P +PFK
Sbjct: 4 QRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFK 63
Query: 65 SPSIGFMNKMYHPNID 80
PSI + +
Sbjct: 64 PPSIYMITPNGRFKCN 79
>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}
Length = 136
Score = 41.6 bits (97), Expect = 3e-06
Identities = 12/72 (16%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVFYYGG 90
+ ++ GP + +E ++ + + +YP P + F++K+ P V G
Sbjct: 37 MTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPC------VNPTTG 90
Query: 91 VWKVRVHLPEHY 102
+ H +
Sbjct: 91 EVQTDFHTLRDW 102
Score = 32.7 bits (74), Expect = 0.004
Identities = 8/40 (20%), Positives = 21/40 (52%)
Query: 87 YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE 126
+ ++ + + +YP P + F++K+ P ++ +GE
Sbjct: 52 HENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGE 91
>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC
{Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId:
6239]}
Length = 149
Score = 41.7 bits (97), Expect = 3e-06
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 5 SAGNRRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEH 60
+ RR+ D KL E G + + + FGP++TP+E G +K+ + E
Sbjct: 2 TPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEE 61
Query: 61 YPFKSPSIGFMNKMYHPNIDE 81
YP K P++ F++KM+HPN+
Sbjct: 62 YPNKPPTVKFISKMFHPNVYA 82
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme,
E2 domain {Plasmodium chabaudi [TaxId: 5825]}
Length = 109
Score = 38.5 bits (89), Expect = 2e-05
Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 10 RMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKS 65
R+ ++ + + TL ++ + VK+ G +T Y V+K+++ P+ YP K
Sbjct: 2 RIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKP 61
Query: 66 PSIGFMNKMYHPNIDE 81
P + F+ K
Sbjct: 62 PIVYFLQKPPKHTHVY 77
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC
{Human(Homo sapiens), E2 S [TaxId: 9606]}
Length = 151
Score = 37.4 bits (86), Expect = 1e-04
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 9 RRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFK 64
R + +V L +G + + L + V GP TPY GG++++++ L + +P
Sbjct: 9 RLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPAS 68
Query: 65 SPSIGFMNKMYHPNIDE 81
P F+ K++HPN+
Sbjct: 69 PPKGYFLTKIFHPNVGA 85
>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 152
Score = 35.0 bits (80), Expect = 7e-04
Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 14/59 (23%)
Query: 36 VKFFGPRDTPYEGGVW---KVRVHLPEHYPFKSPSIGF-----------MNKMYHPNID 80
+ +G T +G V + +P YP K P I + ID
Sbjct: 56 LSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYID 114
Score = 28.4 bits (63), Expect = 0.17
Identities = 10/51 (19%), Positives = 13/51 (25%), Gaps = 14/51 (27%)
Query: 85 VFYYGGVW---KVRVHLPEHYPFKSPSIGF-----------MNKMYHPNID 121
G V + +P YP K P I + ID
Sbjct: 64 TGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYID 114
>d2hgsa1 c.30.1.4 (A:202-303) Eukaryotic glutathione synthetase,
substrate-binding domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 102
Score = 25.4 bits (56), Expect = 1.2
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Query: 9 RRMNIDVIKLIESKHEGTTLKGLKEFCVKFF----GPRDTPYEGGVWKVRVHLPEHYPFK 64
RR D+ + + +E V +F PR Y W+ R+ L + K
Sbjct: 35 RRTFEDISEKGSLDQDRRLFVDGQEIAVVYFRDGYMPRQ--YSLQNWEARLLLERSHAAK 92
Query: 65 SPSIG 69
P I
Sbjct: 93 CPDIA 97
Score = 23.1 bits (50), Expect = 7.6
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 9/40 (22%)
Query: 80 DEVSAVFYYGG---------VWKVRVHLPEHYPFKSPSIG 110
E++ V++ G W+ R+ L + K P I
Sbjct: 58 QEIAVVYFRDGYMPRQYSLQNWEARLLLERSHAAKCPDIA 97
>d1m0wa1 c.30.1.4 (A:216-323) Eukaryotic glutathione synthetase,
substrate-binding domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 108
Score = 24.7 bits (54), Expect = 2.4
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 10/46 (21%)
Query: 75 YHPNIDEVSAVFYYGG----------VWKVRVHLPEHYPFKSPSIG 110
E++ V+Y G W+ R+ L + + K+P +
Sbjct: 57 IRDTEQEIAVVYYRTGYTTTDYTSEKDWEARLFLEKSFAIKAPDLL 102
Score = 23.9 bits (52), Expect = 4.7
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 38 FFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIG 69
+ D E W+ R+ L + + K+P +
Sbjct: 72 GYTTTDYTSEK-DWEARLFLEKSFAIKAPDLL 102
>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco
(Nicotiana tabacum) [TaxId: 4097]}
Length = 236
Score = 24.8 bits (54), Expect = 3.0
Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 8/84 (9%)
Query: 7 GNRRMNIDVIKLIESKHEGT----TLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYP 62
G RR + +I IE K E + ++E+ K +G + + L
Sbjct: 56 GARRASWRIISSIEQKEESRGNEEHVNSIREYRSKIENELSKICDGILKLLDAKLIPS-A 114
Query: 63 FKSPSIGFMNKM---YHPNIDEVS 83
S F KM YH + E
Sbjct: 115 ASGDSKVFYLKMKGDYHRYLAEFK 138
>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId:
9913]}
Length = 230
Score = 24.8 bits (54), Expect = 3.5
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 6/82 (7%)
Query: 7 GNRRMNIDVIKLIESKHEGTTLKG--LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFK 64
G RR + V+ IE K EG K +E+ K + + L + +
Sbjct: 53 GARRSSWRVVSSIEQKTEGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNA-SQ 111
Query: 65 SPSIGFMNKM---YHPNIDEVS 83
+ S F KM Y+ + EV+
Sbjct: 112 AESKVFYLKMKGDYYRYLAEVA 133
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia
coli [TaxId: 562]}
Length = 416
Score = 24.4 bits (52), Expect = 4.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 27 TLKGLKEFCVKFFGPRDTPYEGGVWKVRVHL 57
TL ++E+ V GP TP GG+ + V L
Sbjct: 88 TLDLIREYRVAIKGPLTTPVGGGIRSLNVAL 118
>d2dira1 d.308.1.3 (A:8-92) THUMP domain-containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 23.2 bits (50), Expect = 6.0
Identities = 5/42 (11%), Positives = 14/42 (33%)
Query: 27 TLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSI 68
L+ +K++ F P G +++ + +
Sbjct: 3 FLEDMKKYAETFLEPWFKAPNKGTFQIVYKSRNNSHVNREEV 44
>d1x9na1 a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 272
Score = 23.8 bits (51), Expect = 7.2
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 76 HPNIDEVSAVFYYGGVWKVRVH 97
P++D + V G+ ++ H
Sbjct: 249 VPDLDRIIPVLLEHGLERLPEH 270
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.139 0.444
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 528,038
Number of extensions: 24321
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 58
Length of query: 126
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 51
Effective length of database: 1,377,846
Effective search space: 70270146
Effective search space used: 70270146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.8 bits)