BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11961
(109 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 167 bits (423), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/114 (71%), Positives = 89/114 (78%), Gaps = 13/114 (11%)
Query: 1 MSSPSAGTRRMNIDVIKLIESKHEL-------------FGPRDTPYEGGVWKVRVHLPEN 47
MSSPS G RRM+ DVIKLIESKHE+ +GP+ TPYEGGVWKVRV LP+
Sbjct: 20 MSSPSPGKRRMDTDVIKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDK 79
Query: 48 YPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTPLYDLSNIFECFLPQLLT 101
YPFKSPSIGFMNKI+HPNI E SGTVCL+VINQ WT LYDL+NIFE FLPQLL
Sbjct: 80 YPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLA 133
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 124 bits (311), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/106 (56%), Positives = 71/106 (66%), Gaps = 14/106 (13%)
Query: 10 RMNIDVIKLIESKHEL--------------FGPRDTPYEGGVWKVRVHLPENYPFKSPSI 55
R D KLI + ++L GP T YEGG+WKV V LP++YPF SPSI
Sbjct: 6 RKQCDFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSI 65
Query: 56 GFMNKIYHPNICEGSGTVCLNVINQAWTPLYDLSNIFECFLPQLLT 101
GFMNK+ HPN+ E SG+VCL+VINQ WTPLY L N+FE FLPQLLT
Sbjct: 66 GFMNKLLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLT 111
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 69/105 (65%), Gaps = 13/105 (12%)
Query: 9 RRMNIDVIKLIESKHELF-------------GPRDTPYEGGVWKVRVHLPENYPFKSPSI 55
RR +D ++L S +++ GP TPYE G W + V LP +YPFKSPSI
Sbjct: 15 RRREMDYMRLCNSTRKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSI 74
Query: 56 GFMNKIYHPNICEGSGTVCLNVINQAWTPLYDLSNIFECFLPQLL 100
GF N+I HPN+ E SG+VCL+VINQ WTP+Y L NIF+ FLPQLL
Sbjct: 75 GFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLL 119
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 1 MSSPSAGTRRMNIDVIK--LIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFM 58
+ S ++ +D++ E + E+ GP DTPYEGG +++ + +PE YPF P + F+
Sbjct: 18 LKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFI 77
Query: 59 NKIYHPNICEGSGTVCLNVINQAWTPLYDLSNI 91
KI+HPNI +G +CL+++ W L +
Sbjct: 78 TKIWHPNISSVTGAICLDILKDQWAAAMTLRTV 110
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 1 MSSPSAGTRRMNIDVIK--LIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFM 58
+ S ++ +D++ E + E+ GP DTPYEGG +++ + +PE YPF P + F+
Sbjct: 19 LKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFI 78
Query: 59 NKIYHPNICEGSGTVCLNVINQAWTPLYDLSNI 91
KI+HPNI +G +CL+++ W L +
Sbjct: 79 TKIWHPNISSVTGAICLDILKDQWAAAMTLRTV 111
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 1 MSSPSAGTRRMNIDVIK--LIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFM 58
+ S ++ +D++ E + E+ GP DTPYEGG +++ + +PE YPF P + F+
Sbjct: 21 LKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFI 80
Query: 59 NKIYHPNICEGSGTVCLNVINQAWTPLYDLSNI 91
KI+HPNI +G +CL+++ W L +
Sbjct: 81 TKIWHPNISSVTGAICLDILKDQWAAAMTLRTV 113
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 1 MSSPSAGTRRMNIDVIK--LIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFM 58
+ S ++ +D++ E + E+ GP DTPYEGG +++ + +PE YPF P + F+
Sbjct: 70 LKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFI 129
Query: 59 NKIYHPNICEGSGTVCLNVINQAWTPLYDLSNI 91
KI+HPNI +G +CL+++ W L +
Sbjct: 130 TKIWHPNISSVTGAICLDILKDQWAAAMTLRTV 162
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 1 MSSPSAGTRRMNIDVIK--LIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFM 58
+ S ++ +D++ E + E+ GP DTPYEGG +++ + +PE YPF P + F+
Sbjct: 34 LKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFI 93
Query: 59 NKIYHPNICEGSGTVCLNVINQAWTPLYDLSNI 91
KI+HPNI +G +CL+++ W L +
Sbjct: 94 TKIWHPNISSVTGAICLDILKDQWAAAMTLRTV 126
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 22 KHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQA 81
+ + GP D+PY GGV+ + +H P +YPFK P I F KIYHPNI +G +CL+++
Sbjct: 35 QASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNI-NANGNICLDILKDQ 93
Query: 82 WTPLYDLSNIF 92
W+P LS +
Sbjct: 94 WSPALTLSKVL 104
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 27 GPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTPLY 86
GP D+PY+GG++ + VH P +YPFK+P + FM K+YHPNI +G +CL+++ W+P
Sbjct: 42 GPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNI-NKNGVICLDILKDQWSPAL 100
Query: 87 DLSNIF 92
LS +
Sbjct: 101 TLSRVL 106
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 18 LIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNV 77
L + + GP D+PY+GGV+ + +H P +YPFK P + F KIYHPNI +G++CL++
Sbjct: 35 LFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNI-NSNGSICLDI 93
Query: 78 INQAWTPLYDLSNIF 92
+ W+P +S +
Sbjct: 94 LRSQWSPALTVSKVL 108
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 76.3 bits (186), Expect = 4e-15, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP D+PY+GGV+ + +H P +YPFK P + F +IYHPNI +G++ L+++ W+P
Sbjct: 39 IMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI-NSNGSISLDILRSQWSP 97
Query: 85 LYDLSNIFECFLPQLLTP 102
+S + L P
Sbjct: 98 ALTISKVLLSICSLLCDP 115
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+FGP DTP++GG +K+ + E+YP K P++ F+++++HPNI G++CL+++ W+P
Sbjct: 40 IFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIY-ADGSICLDILQNQWSP 98
Query: 85 LYDLSNIFECFLPQLLTP 102
+YD++ I L P
Sbjct: 99 IYDVAAILTSIQSLLCDP 116
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 75.5 bits (184), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 22 KHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQA 81
+ + GP D+PY+GGV+ + +H P +YPFK P + F +IYHPNI +G++CL+++
Sbjct: 44 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI-NSNGSICLDILRSQ 102
Query: 82 WTPLYDLSNIFECFLPQLLTP 102
W+P +S + L P
Sbjct: 103 WSPALTISKVLLSICSLLCDP 123
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 75.5 bits (184), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP D+PY+GGV+ + +H P +YPFK P + F +IYHPNI +G++CL+++ W+P
Sbjct: 47 IMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI-NSNGSICLDILRSQWSP 105
Query: 85 LYDLSNIFECFLPQLLTP 102
+S + L P
Sbjct: 106 ALTISKVLLSICSLLCDP 123
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 75.1 bits (183), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 22 KHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQA 81
+ + GP D+PY+GGV+ + +H P +YPFK P + F +IYHPNI +G++CL+++
Sbjct: 36 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI-NSNGSICLDILRSQ 94
Query: 82 WTPLYDLSNIFECFLPQLLTP 102
W+P +S + L P
Sbjct: 95 WSPALTISKVLLSICSLLCDP 115
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 75.1 bits (183), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP D+PY+GGV+ + +H P +YPFK P + F +IYHPNI +G++CL+++ W+P
Sbjct: 42 IMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI-NSNGSICLDILRSQWSP 100
Query: 85 LYDLSNIFECFLPQLLTP 102
+S + L P
Sbjct: 101 ALTISKVLLSICSLLCDP 118
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 75.1 bits (183), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP D+PY+GGV+ + +H P +YPFK P + F +IYHPNI +G++CL+++ W+P
Sbjct: 36 IMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI-NSNGSICLDILRSQWSP 94
Query: 85 LYDLSNIFECFLPQLLTP 102
+S + L P
Sbjct: 95 ALTISKVLLSICSLLCDP 112
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 75.1 bits (183), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP D+PY+GGV+ + +H P +YPFK P + F +IYHPNI +G++CL+++ W+P
Sbjct: 55 IMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI-NSNGSICLDILRSQWSP 113
Query: 85 LYDLSNIFECFLPQLLTP 102
+S + L P
Sbjct: 114 ALTISKVLLSICSLLCDP 131
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 75.1 bits (183), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP D+PY+GGV+ + +H P +YPFK P + F +IYHPNI +G++CL+++ W+P
Sbjct: 37 IMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI-NSNGSICLDILRSQWSP 95
Query: 85 LYDLSNIFECFLPQLLTP 102
+S + L P
Sbjct: 96 ALTISKVLLSICSLLCDP 113
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 75.1 bits (183), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP D+PY+GGV+ + +H P +YPFK P + F +IYHPNI +G++CL+++ W+P
Sbjct: 39 IMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI-NSNGSICLDILRSQWSP 97
Query: 85 LYDLSNIFECFLPQLLTP 102
+S + L P
Sbjct: 98 ALTISKVLLSICSLLCDP 115
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 75.1 bits (183), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP D+PY+GGV+ + +H P +YPFK P + F +IYHPNI +G++CL+++ W+P
Sbjct: 39 IMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI-NSNGSICLDILRSQWSP 97
Query: 85 LYDLSNIFECFLPQLLTP 102
+S + L P
Sbjct: 98 ALTISKVLLSICSLLCDP 115
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 22 KHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQA 81
+ + GP D+PY+GGV+ + +H P +YPFK P + F +IYHPNI +G++CL+++
Sbjct: 42 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI-NSNGSICLDILRSQ 100
Query: 82 WTPLYDLSNIFECFLPQLLTP 102
W+P +S + L P
Sbjct: 101 WSPALTISKVLLSICSLLCDP 121
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP D+PY GGV+ + +H P +YPFK P + F KIYHPNI G +CL+++ W+P
Sbjct: 57 IMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNI-NSQGAICLDILKDQWSP 115
Query: 85 LYDLSNIF 92
+S +
Sbjct: 116 ALTISKVL 123
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 26 FGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTPL 85
GP D+PY+GGV+ + +H P +YPFK P + F +IYHPNI +G++CL+++ W+P
Sbjct: 40 MGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI-NSNGSICLDILRSQWSPA 98
Query: 86 YDLSNIFECFLPQLLTP 102
+S + L P
Sbjct: 99 LTISKVLLSICSLLCDP 115
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP D+PY+GGV+ + +H P +YPFK P + F +IYHPNI +G++CL+ + W+P
Sbjct: 39 IMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI-NSNGSICLDALRSQWSP 97
Query: 85 LYDLSNIFECFLPQLLTP 102
+S + L P
Sbjct: 98 ALTISKVLLSICSLLCDP 115
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 46/81 (56%)
Query: 22 KHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQA 81
K GP TPYEGG + V + +P YPFK P + F K+YHPNI +G +CL+++ A
Sbjct: 35 KGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNA 94
Query: 82 WTPLYDLSNIFECFLPQLLTP 102
W+P+ L + L +P
Sbjct: 95 WSPVITLKSALISLQALLQSP 115
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 17 KLIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLN 76
L + + GP D+PY GGV+ + +H P +YPFK P + F +IYHPNI +G++CL+
Sbjct: 29 DLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNI-NSNGSICLD 87
Query: 77 VINQAWTPLYDLSNIFECFLPQLLTP 102
++ W+P +S + L P
Sbjct: 88 ILRDQWSPALTISKVLLSISSLLTDP 113
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP D+PY+GGV+ + +H P +YPFK P + F +IYHPNI +G++CL+++ W P
Sbjct: 39 IMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI-NSNGSICLDILRSQWGP 97
Query: 85 LYDLSNIFECFLPQLLTP 102
+S + L P
Sbjct: 98 ALTISKVLLSICSLLCDP 115
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 18 LIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNV 77
L + + GP D+ Y+GGV+ + VH P +YPFK P I F KIYHPNI +G++CL++
Sbjct: 48 LFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNI-NSNGSICLDI 106
Query: 78 INQAWTPLYDLSNIF 92
+ W+P +S +
Sbjct: 107 LRSQWSPALTVSKVL 121
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 46/81 (56%)
Query: 22 KHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQA 81
K GP TPYEGG + V + +P YPFK P + F K+YHPNI +G +CL+++ A
Sbjct: 36 KGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNA 95
Query: 82 WTPLYDLSNIFECFLPQLLTP 102
W+P+ L + L +P
Sbjct: 96 WSPVITLKSALISLQALLQSP 116
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 18 LIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNV 77
L + + GP D+ Y+GGV+ + VH P +YPFK P I F KIYHPNI +G++CL++
Sbjct: 32 LFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNI-NSNGSICLDI 90
Query: 78 INQAWTPLYDLSNIF 92
+ W+P +S +
Sbjct: 91 LRSQWSPALTVSKVL 105
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 18 LIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNV 77
L + + GP D+ Y+GGV+ + VH P +YPFK P I F KIYHPNI +G++CL++
Sbjct: 36 LFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNI-NSNGSICLDI 94
Query: 78 INQAWTPLYDLSNIF 92
+ W+P +S +
Sbjct: 95 LRSQWSPALTVSKVL 109
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP+D+P+EGG +K+ + LPE YP +P + FM KIYHPN+ + G +CL+++ W+P
Sbjct: 39 IAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNV-DKLGRICLDILKDKWSP 97
Query: 85 LYDLSNIF 92
+ +
Sbjct: 98 ALQIRTVL 105
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP+D+P+EGG +K+ + LPE YP +P + FM KIYHPN+ + G +CL+++ W+P
Sbjct: 37 IAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNV-DKLGRICLDILKDKWSP 95
Query: 85 LYDLSNIF 92
+ +
Sbjct: 96 ALQIRTVL 103
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 73.2 bits (178), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP+D+P+EGG +K+ + LPE YP +P + FM KIYHPN+ + G +CL+++ W+P
Sbjct: 41 IAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNV-DKLGRICLDILKDKWSP 99
Query: 85 LYDLSNIF 92
+ +
Sbjct: 100 ALQIRTVL 107
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 73.2 bits (178), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP+D+P+EGG +K+ + LPE YP +P + FM KIYHPN+ + G +CL+++ W+P
Sbjct: 44 IAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNV-DKLGRICLDILKDKWSP 102
Query: 85 LYDLSNIF 92
+ +
Sbjct: 103 ALQIRTVL 110
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP+D+P+EGG +K+ + LPE YP +P + FM KIYHPN+ + G +CL+++ W+P
Sbjct: 42 IAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNV-DKLGRICLDILKDKWSP 100
Query: 85 LYDLSNIF 92
+ +
Sbjct: 101 ALQIRTVL 108
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 18 LIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNV 77
L + + GP ++PY+GGV+ + +H P +YPFK P + F +IYHPNI +G++CL++
Sbjct: 33 LFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI-NSNGSICLDI 91
Query: 78 INQAWTPLYDLSNIF 92
+ W+P +S +
Sbjct: 92 LRSQWSPALTISKVL 106
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 72.4 bits (176), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+FGP++TP+E G +K+ + E YP K P++ F++K++HPN+ G++CL+++ W+P
Sbjct: 40 IFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVY-ADGSICLDILQNRWSP 98
Query: 85 LYDLSNIF 92
YD++ I
Sbjct: 99 TYDVAAIL 106
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+FGP TP+E G +K+ + E YP K P++ F++K++HPN+ G++CL+++ W+P
Sbjct: 40 IFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVY-ADGSICLDILQNRWSP 98
Query: 85 LYDLSNIFECFLPQLLTP 102
YD+S+I L P
Sbjct: 99 TYDVSSILTSIQSLLDEP 116
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 72.0 bits (175), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+FGP++TP+E G +K+ + E YP K P++ F++K++HPN+ G++CL+++ W+P
Sbjct: 43 IFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVY-ADGSICLDILQNRWSP 101
Query: 85 LYDLSNIF 92
YD++ I
Sbjct: 102 TYDVAAIL 109
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 71.6 bits (174), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP D+PY+GGV+ + +H P +YPFK P + F +IYHPNI +G++ L+++ W+P
Sbjct: 37 IMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI-NSNGSISLDILRSQWSP 95
Query: 85 LYDLSNIFECFLPQLLTP 102
+S + L P
Sbjct: 96 ALTISKVLLSICSLLCDP 113
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP D+PY+GGV+ + +H P +YPFK P + F +IYHPNI +G++ L+++ W+P
Sbjct: 36 IMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI-NSNGSISLDILRSQWSP 94
Query: 85 LYDLSNIFECFLPQLLTP 102
+S + L P
Sbjct: 95 ALKISKVLLSICSLLCDP 112
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP D+PY+GGV+ + +H P +YPFK P + F +IYHPNI +G++ L+++ W+P
Sbjct: 40 IMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI-NSNGSISLDILRSQWSP 98
Query: 85 LYDLSNIFECFLPQLLTP 102
+S + L P
Sbjct: 99 ALTISKVLLSICSLLCDP 116
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP D+PY+GGV+ + +H P +YPFK P + F +IYHPNI +G++ L+++ W+P
Sbjct: 55 IMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI-NSNGSIXLDILRSQWSP 113
Query: 85 LYDLSNIFECFLPQLLTP 102
+S + L P
Sbjct: 114 ALTISKVLLSICSLLCDP 131
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP DTPYE G +++ + E YP K P + F+++++HPN+ +G +CL+++ WTP
Sbjct: 40 IIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVY-ANGEICLDILQNRWTP 98
Query: 85 LYDLSNIF 92
YD+++I
Sbjct: 99 TYDVASIL 106
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 27 GPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTPLY 86
GP TPYEGG +K+ + LPE YP + P + F+ KIYHPNI + G +CL+++ W+P
Sbjct: 39 GPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNI-DKLGRICLDILKDKWSPAL 97
Query: 87 DLSNIFECFLPQLLTP 102
+ + L +P
Sbjct: 98 QIRTVLLSIQALLSSP 113
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 27 GPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTPLY 86
GP TPYEGG +K+ + LPE YP + P + F+ KIYHPNI + G +CL+++ W+P
Sbjct: 39 GPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNI-DKLGRICLDILKDKWSPAL 97
Query: 87 DLSNIFECFLPQLLTP 102
+ + L +P
Sbjct: 98 QIRTVLLSIQALLSSP 113
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 18 LIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNV 77
L + + GP D+ Y+GGV+ + VH P +YPFK P I F KIYHPNI +G++ L++
Sbjct: 36 LFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNI-NSNGSIKLDI 94
Query: 78 INQAWTPLYDLSNIFECFLPQLLTP 102
+ W+P +S + L P
Sbjct: 95 LRSQWSPALTVSKVLLSICSLLCDP 119
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 68.9 bits (167), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP D+PY+GGV+ + +H P +YPFK P + F +IYHP I +G++ L+++ W+P
Sbjct: 37 IMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPAI-NSNGSISLDILRSQWSP 95
Query: 85 LYDLSNIFECFLPQLLTP 102
+S + L P
Sbjct: 96 ALTISKVLLSICSLLCDP 113
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 27 GPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTPLY 86
GP +PYE G++++ ++LP++YP ++P + F+ KIYHPNI + G +CL+V+ W+P
Sbjct: 41 GPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNI-DRLGRICLDVLKTNWSPAL 99
Query: 87 DLSNIFECFLPQLLTP 102
+ + L +P
Sbjct: 100 QIRTVLLSIQALLASP 115
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 27 GPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTPLY 86
GP +PYE G++++ ++LP++YP ++P + F+ KIYHPNI + G +CL+V+ W+P
Sbjct: 43 GPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNI-DRLGRICLDVLKTNWSPAL 101
Query: 87 DLSNIFECFLPQLLTP 102
+ + L +P
Sbjct: 102 QIRTVLLSIQALLASP 117
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 39/58 (67%)
Query: 27 GPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
GP TPYEGG + + + +P +YP+ P I F+ KI+HPNI +G +CL+V+ W+P
Sbjct: 61 GPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLKNEWSP 118
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP TPYEGG + + + +P +YP+ P + F+ KI+HPNI +G +CL+++ W+P
Sbjct: 81 IAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSP 140
Query: 85 LYDLSNIFECFLPQLLTPIRT 105
+ L P+ T
Sbjct: 141 ALTIRTALLSIQAMLADPVPT 161
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 52/83 (62%), Gaps = 5/83 (6%)
Query: 14 DVIKLIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTV 73
D ++ + + ++ G +TPYE GV+K+ V +PE YPF+ P I F+ IYHPNI + +G +
Sbjct: 29 DKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNI-DSAGRI 87
Query: 74 CLNVI----NQAWTPLYDLSNIF 92
CL+V+ AW P +++ +
Sbjct: 88 CLDVLKLPPKGAWRPSLNIATVL 110
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 27 GPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTPLY 86
GP +PYE G++++ ++LP++YP ++P + F+ KIYHPNI + G + L+V+ W+P
Sbjct: 41 GPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNI-DRLGRISLDVLKTNWSPAL 99
Query: 87 DLSNIFECFLPQLLTP 102
+ + L +P
Sbjct: 100 QIRTVLLSIQALLASP 115
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 13 IDVIKLIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFM-NKIYHPNICEGSG 71
ID L + + + GP DTPYE +++ + +P +YP P I FM N I H N+ +G
Sbjct: 42 IDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATG 101
Query: 72 TVCLNVIN-QAWTPLYDLSNIFECFLPQLLTPI 103
+CLN++ + WTP++DL + L P+
Sbjct: 102 EICLNILKPEEWTPVWDLLHCVHAVWRLLREPV 134
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Query: 9 RRMNIDVIKLIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICE 68
R + +D L+ + L P + PY+ G +++ ++ P YPFK P I F KIYHPNI E
Sbjct: 25 RNIQVDEANLL-TWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE 83
Query: 69 GSGTVCLNVIN-QAWTPLYDLSNIFECFL-----PQLLTPIRTPL 107
G VCL VI+ + W P + + + PQ P+R L
Sbjct: 84 -KGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADL 127
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Query: 9 RRMNIDVIKLIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICE 68
R + +D L+ + L P + PY+ G +++ ++ P YPFK P I F KIYHPNI E
Sbjct: 23 RNIQVDEANLL-TWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE 81
Query: 69 GSGTVCLNVIN-QAWTPLYDLSNIFECFL-----PQLLTPIRTPL 107
G VCL VI+ + W P + + + PQ P+R L
Sbjct: 82 -KGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADL 125
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
L GP+DT YE +K+ + P +YP+K P + F +HPN+ + SG +CL+++ + WT
Sbjct: 45 LDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNV-DQSGNICLDILKENWTA 103
Query: 85 LYDLSNIF 92
YD+ I
Sbjct: 104 SYDVRTIL 111
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 13 IDVIKLIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFM-NKIYHPNICEGSG 71
ID L + + + GP DTPYE +++ + +P +YP P I FM N I H N+ +G
Sbjct: 42 IDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATG 101
Query: 72 TVCLNVIN-QAWTPLYDLSNIFECFLPQLLTPI 103
+CLN++ + WTP++DL + L P+
Sbjct: 102 EICLNILKPEEWTPVWDLLHCVHAVWRLLREPV 134
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 13 IDVIKLIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFM-NKIYHPNICEGSG 71
ID L + + + GP DTPYE +++ + +P +YP P I FM N I H N+ +G
Sbjct: 42 IDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATG 101
Query: 72 TVCLNVIN-QAWTPLYDLSNIFECFLPQLLTPI 103
+CLN++ + WTP++DL + L P+
Sbjct: 102 EICLNILKPEEWTPVWDLLHCVHAVWRLLREPV 134
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 27 GPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTPLY 86
GP +PYE G++++ ++LP++YP ++P + F+ KIYHP I + G + L+V+ W+P
Sbjct: 41 GPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPAI-DRLGRISLDVLKTNWSPAL 99
Query: 87 DLSNIFECFLPQLLTP 102
+ + L +P
Sbjct: 100 QIRTVLLSIQALLASP 115
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 1 MSSPSAGTRRMNIDVIKLIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNK 60
P G R +D L + +FGP +T YEGG +K R+ P +YP+ P+ F+ K
Sbjct: 20 QEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTK 79
Query: 61 IYHPNICEGSGTVCLNVIN 79
++HPNI E +G VC+++++
Sbjct: 80 MWHPNIYE-TGDVCISILH 97
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 1 MSSPSAGTRRMNIDVIKLIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNK 60
P G R +D L + +FGP +T YEGG +K R+ P +YP+ P+ F+ K
Sbjct: 17 QEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTK 76
Query: 61 IYHPNICEGSGTVCLNVIN 79
++HPNI E +G VC+++++
Sbjct: 77 MWHPNIYE-TGDVCISILH 94
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 5 SAGTRRMNIDVIKLIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHP 64
SAG + NI E + + GP + YEGGV+ + + +YPFK P + F +IYH
Sbjct: 24 SAGPKGDNI-----YEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHC 78
Query: 65 NICEGSGTVCLNVINQAWTPLYDLSNIF 92
NI G +CL+++ W+P +S +
Sbjct: 79 NI-NSQGVICLDILKDNWSPALTISKVL 105
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP DT YEGGV+K + P++YP + P + F+ +I+HPN+ + +G VC++++++
Sbjct: 54 IIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNV-DKNGDVCISILHEPGED 112
Query: 85 LYDLSNIFECFLP 97
Y E +LP
Sbjct: 113 KYGYEKPEERWLP 125
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Query: 5 SAGTRRMNIDVIKLIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHP 64
SAG + NI E + + GP + YEGGV+ + + YPFK P + F +IYH
Sbjct: 69 SAGPKGDNI-----YEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHC 123
Query: 65 NICEGSGTVCLNVINQAWTPLYDLSNIF 92
NI G +CL+++ W+P +S +
Sbjct: 124 NI-NSQGVICLDILKDNWSPALTISKVL 150
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 23 HELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVI-NQA 81
H L P PY + +R+ P YPFK P I F KIYHPN+ E G +CL +I ++
Sbjct: 35 HALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDEN-GQICLPIISSEN 93
Query: 82 WTPLYDLSNIFECF-----LPQLLTPIRTPL 107
W P + E P + P+R L
Sbjct: 94 WKPCTKTCQVLEALNVLVNRPNIREPLRMDL 124
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 23 HELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVI-NQA 81
H L P PY + +R+ P YPFK P I F KIYHPN+ E G +CL +I ++
Sbjct: 38 HALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDEN-GQICLPIISSEN 96
Query: 82 WTPLYDLSNIFECF-----LPQLLTPIRTPL 107
W P + E P + P+R L
Sbjct: 97 WKPCTKTCQVLEALNVLVNRPNIREPLRMDL 127
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 27 GPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTPLY 86
GP TPY GG++++++ L +++P P F+ KI+HPN+ +G +C+NV+ + WT
Sbjct: 51 GPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVG-ANGEICVNVLKRDWTAEL 109
Query: 87 DLSNIF---ECFL 96
+ ++ +C L
Sbjct: 110 GIRHVLLTIKCLL 122
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 14/91 (15%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVIN----- 79
+ GP DT YEGG +K + P +YP K P + F+++I+HPNI + G VC+++++
Sbjct: 40 VIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNI-DKEGNVCISILHDPGDD 98
Query: 80 --------QAWTPLYDLSNIFECFLPQLLTP 102
+ W P++ + I + L P
Sbjct: 99 KWGYERPEERWLPVHTVETILLSVISMLTDP 129
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ G T YE +K+ + P YP+ +P++ F+ YHPN+ + G + L+++ + W+
Sbjct: 66 IHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNV-DTQGNISLDILKEKWSA 124
Query: 85 LYDLSNIFECFLPQLLTP-IRTPL 107
LYD+ I L P I +PL
Sbjct: 125 LYDVRTILLSIQSLLGEPNIDSPL 148
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 16 IKLIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCL 75
+ L+ K + G T +EGG++K+ + PE YP + P F ++HPN+ SGTVCL
Sbjct: 42 LDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYP-SGTVCL 100
Query: 76 NVIN--QAWTPLYDLSNIF 92
+++N + W P + I
Sbjct: 101 SILNEEEGWKPAITIKQIL 119
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 27 GPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVI--NQAWTP 84
G + TP+EGG++K+R+ ++YP P F ++HPN+ SGTVCL+++ ++ W P
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVAP-SGTVCLSILEEDKDWRP 108
Query: 85 LYDLSNIF 92
+ I
Sbjct: 109 AITIKQIL 116
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 27 GPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVIN--QAWTP 84
G T + GGV+ + V P YP K P + F YHPN+ SGT+CL+++N Q W P
Sbjct: 47 GKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYP-SGTICLSILNEDQDWRP 105
Query: 85 LYDLSNI 91
L I
Sbjct: 106 AITLKQI 112
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 27 GPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVIN--QAWTP 84
G T + GGV+ + V P YP K P + F YHPN+ SGT+CL+++N Q W P
Sbjct: 49 GKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYP-SGTICLSILNEDQDWRP 107
Query: 85 LYDLSNI 91
L I
Sbjct: 108 AITLKQI 114
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 27 GPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVI--NQAWTP 84
G + TP+EGG++K+R+ ++YP P F ++HPN+ SGTVCL+++ ++ W P
Sbjct: 47 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRP 105
Query: 85 LYDLSNIF 92
+ I
Sbjct: 106 AITIKQIL 113
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 27 GPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVI--NQAWTP 84
G + TP+EGG++K+R+ ++YP P F ++HPN+ SGTVCL+++ ++ W P
Sbjct: 49 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRP 107
Query: 85 LYDLSNIF 92
+ I
Sbjct: 108 AITIKQIL 115
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 27 GPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVI--NQAWTP 84
G + TP+EGG++K+R+ ++YP P F ++HPN+ SGTVCL+++ ++ W P
Sbjct: 48 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRP 106
Query: 85 LYDLSNIF 92
+ I
Sbjct: 107 AITIKQIL 114
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 27 GPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVI--NQAWTP 84
G + TP+EGG++K+R+ ++YP P F ++HPN+ SGTVCL+++ ++ W P
Sbjct: 52 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRP 110
Query: 85 LYDLSNIF 92
+ I
Sbjct: 111 AITIKQIL 118
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 27 GPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVI--NQAWTP 84
G + TP+EGG++K+R+ ++YP P F ++HPN+ SGTVCL+++ ++ W P
Sbjct: 49 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRP 107
Query: 85 LYDLSNIF 92
+ I
Sbjct: 108 AITIKQIL 115
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 27 GPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVI--NQAWTP 84
G + TP+EGG++K+R+ ++YP P F ++HPN+ SGTVCL+++ ++ W P
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRP 108
Query: 85 LYDLSNIF 92
+ I
Sbjct: 109 AITIKQIL 116
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 27 GPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVI--NQAWTP 84
G + TP+EGG++K+R+ ++YP P F ++HPN+ SGTVCL+++ ++ W P
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRP 108
Query: 85 LYDLSNIF 92
+ I
Sbjct: 109 AITIKQIL 116
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 27 GPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVI--NQAWTP 84
G + TP+EGG++K+R+ ++YP P F ++HPN+ SGTVCL+++ ++ W P
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRP 108
Query: 85 LYDLSNIF 92
+ I
Sbjct: 109 AITIKQIL 116
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 14/89 (15%)
Query: 27 GPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVIN------- 79
GP DTPY GV+ ++ P++YP P + F I HPNI +G VC+++++
Sbjct: 43 GPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYP-NGEVCISILHSPGDDPN 101
Query: 80 ------QAWTPLYDLSNIFECFLPQLLTP 102
+ W+P+ + I + L P
Sbjct: 102 MYELAEERWSPVQSVEKILLSVMSMLSEP 130
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 28 PRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTPLYD 87
P + Y G + E YP + P + + KI+HPNI + G VCLN++ + W+P D
Sbjct: 72 PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNI-DLKGNVCLNILREDWSPALD 130
Query: 88 LSNIFECFLPQLLTP 102
L +I L L P
Sbjct: 131 LQSIITGLLFLFLEP 145
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 48.5 bits (114), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 27 GPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVI--NQAWTP 84
G + TP+EGG++K+R+ ++YP P F ++HP + SGTVCL+++ ++ W P
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQVYP-SGTVCLSILEEDKDWRP 108
Query: 85 LYDLSNIF 92
+ I
Sbjct: 109 AITIKQIL 116
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 27 GPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVI--NQAWTP 84
G + TP+EGG++K+R+ ++YP P F ++HPN+ SGTV L+++ ++ W P
Sbjct: 47 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVSLSILEEDKDWRP 105
Query: 85 LYDLSNIF 92
+ I
Sbjct: 106 AITIKQIL 113
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 27 GPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVI--NQAWTP 84
G + TP+EGG++K+R+ ++YP P F ++HPN+ SGTV L+++ ++ W P
Sbjct: 47 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVXLSILEEDKDWRP 105
Query: 85 LYDLSNIF 92
+ I
Sbjct: 106 AITIKQIL 113
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 27 GPRDTPY--EGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
P D+ Y G +++ V ++YP + P++ F+ +Y P + G G +C ++N WTP
Sbjct: 58 APADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSP-LVTGEGGICDRMVNDFWTP 116
Query: 85 LYDLSNIFECFLPQLLTPIRT 105
S++ + L ++ + ++
Sbjct: 117 DQHASDVIKLVLDRVFSQYKS 137
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 14/91 (15%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVIN----- 79
+ GP DT +E GV+ + P +YP P + F +++HPNI G VC+++++
Sbjct: 43 IMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYP-DGRVCISILHAPGDD 101
Query: 80 --------QAWTPLYDLSNIFECFLPQLLTP 102
+ W+P+ + I + L P
Sbjct: 102 PMGYESSAERWSPVQSVEKILLSVVSMLAEP 132
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 14/91 (15%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVIN----- 79
+ GP DT +E GV+ + P +YP P + F +++HPNI G VC+++++
Sbjct: 44 IMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYP-DGRVCISILHAPGDD 102
Query: 80 --------QAWTPLYDLSNIFECFLPQLLTP 102
+ W+P+ + I + L P
Sbjct: 103 PMGYESSAERWSPVQSVEKILLSVVSMLAEP 133
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 14/91 (15%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVIN----- 79
+ GP DT +E GV+ + P +YP P + F +++HPNI G VC+++++
Sbjct: 46 IMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYP-DGRVCISILHAPGDD 104
Query: 80 --------QAWTPLYDLSNIFECFLPQLLTP 102
+ W+P+ + I + L P
Sbjct: 105 PMGYESSAERWSPVQSVEKILLSVVSMLAEP 135
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 14/91 (15%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVIN----- 79
+ GP DT +E GV+ + P +YP P + F +++HPNI G VC+++++
Sbjct: 40 IMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYP-DGRVCISILHAPGDD 98
Query: 80 --------QAWTPLYDLSNIFECFLPQLLTP 102
+ W+P+ + I + L P
Sbjct: 99 PMGYESSAERWSPVQSVEKILLSVVSMLAEP 129
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 17 KLIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLN 76
++E + E+ G +++ ++G V+++ +H Y + P + F+ +HPN+ +G C++
Sbjct: 51 DMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCID 110
Query: 77 VIN--QAWTPLYDLSNIFECFLPQLLTPI 103
++ + W Y LS+I L P+
Sbjct: 111 FLDNPEKWNTNYTLSSILLALQVMLSNPV 139
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 28 PRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQ------A 81
P + Y+GG ++ +P+ Y P + + KI+HPNI E +G +CL+++ +
Sbjct: 53 PDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITE-TGEICLSLLREHSIDGTG 111
Query: 82 WTPLYDLSNI 91
W P L ++
Sbjct: 112 WAPTRTLKDV 121
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 28 PRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQ------A 81
P + Y+GG ++ +P+ Y P + + KI+HPNI E +G +CL+++ +
Sbjct: 53 PDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITE-TGEICLSLLREHSIDGTG 111
Query: 82 WTPLYDLSNI 91
W P L ++
Sbjct: 112 WAPTRTLKDV 121
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 28 PRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTPLYD 87
P + Y+ G + + + YP P + +YHPNI + G VCLN++ + W P+
Sbjct: 43 PDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETXVYHPNI-DLEGNVCLNILREDWKPVLT 101
Query: 88 LSNI 91
+++I
Sbjct: 102 INSI 105
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%)
Query: 24 ELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWT 83
+ G +T Y V+K+++ P+NYP K P + F+ K +G +CL+V+ +
Sbjct: 55 QYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLGDDYN 114
Query: 84 PLYDLSNIFECFLPQL 99
P +S + + L
Sbjct: 115 PSLSISGLILSIISML 130
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 25/115 (21%)
Query: 3 SPSAGTRRMNIDVIKL-----------------IESKHELFGPRDTPYEGGVWKVRVHLP 45
+P+ T+R+ D +++ +E + + GP TPYEGG + ++ P
Sbjct: 11 APTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFP 70
Query: 46 ENYPFKSPSIGFMNKIYHPNICEGSGT-VCLNVIN---QAWTPLYDLSNIFECFL 96
+PFK PSI + PN T +CL++ + W P + +S I L
Sbjct: 71 REFPFKPPSIYMIT----PNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLL 121
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 18/84 (21%)
Query: 13 IDVIKLIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSP-----SIGFMNKIYHPNIC 67
+D+ K++ + GP DTPY G ++ V+ P++YP P + G + ++PN+
Sbjct: 109 LDIXKVL-----ITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLY 163
Query: 68 EGSGTVCLNVIN-------QAWTP 84
G VCL+++N + W P
Sbjct: 164 -NDGKVCLSILNTWHGRPEEKWNP 186
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 28 PRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTPLYD 87
P + Y+ G + + + YP P + +YHPNI + G V LN++ + W P+
Sbjct: 63 PDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNI-DLEGNVALNILREDWKPVLT 121
Query: 88 LSNI 91
+++I
Sbjct: 122 INSI 125
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 24 ELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFM--NKIYHPNICEGSGTVCLNVINQA 81
++ G T YEG +++ YPF SP + F N HP++ +G +CL+++ +
Sbjct: 59 DMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYS-NGHICLSILTED 117
Query: 82 WTPLYDLSNI 91
W+P + ++
Sbjct: 118 WSPALSVQSV 127
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 36/73 (49%)
Query: 27 GPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTPLY 86
G +T Y V+K+++ P++YP K P + F+ K +G +CL+++ + P
Sbjct: 44 GLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSL 103
Query: 87 DLSNIFECFLPQL 99
+S + + L
Sbjct: 104 SISGLVLSIISML 116
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 32.0 bits (71), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
Query: 12 NIDVIKLIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSG 71
+ D I + + + GP + +E ++ + + NYP P + F++KI P + +G
Sbjct: 33 DSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTG 92
Query: 72 TVCLNVIN-QAWTPLYDLSNIFECFLPQLLTPIRTPL 107
V + + W Y + + ++ TP L
Sbjct: 93 EVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKKL 129
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
Query: 12 NIDVIKLIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSG 71
+ D I + + + GP + +E ++ + + NYP P + F++KI P + +G
Sbjct: 32 DSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTG 91
Query: 72 TVCLNVIN-QAWTPLYDLSNIFECFLPQLLTPIRTPL 107
V + + W Y + + ++ TP L
Sbjct: 92 EVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKKL 128
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTV 73
+ GP T YE ++ ++V YP PS+ F+ KI I SG V
Sbjct: 50 IIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 98
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTV 73
+ GP T YE ++ ++V YP PS+ F+ KI I SG V
Sbjct: 44 IIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 92
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTV 73
+ GP T YE ++ ++V YP PS+ F+ KI I SG V
Sbjct: 45 IIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 93
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTV 73
+ GP T YE ++ ++V YP PS+ F+ KI I SG V
Sbjct: 55 IIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 103
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 28.9 bits (63), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Query: 14 DVIKLIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTV 73
D I L +FG T +E ++ + + +NYP P++ F KI + + G V
Sbjct: 54 DDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKI-EMSCVDNCGRV 112
Query: 74 CLNVIN--QAWTPLYDLSNIFECFLPQLLTPIRTPL 107
N ++ + W Y + I ++L+ L
Sbjct: 113 IKNNLHILKNWNRNYTIETILISLRQEMLSSANKRL 148
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Query: 14 DVIKLIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTV 73
D I L +FG T +E ++ + + +NYP P++ F KI + + G V
Sbjct: 50 DDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKI-EMSCVDNCGRV 108
Query: 74 CLNVIN--QAWTPLYDLSNIFECFLPQLLTPIRTPL 107
N ++ + W Y + I ++L+ L
Sbjct: 109 IKNNLHILKNWNRNYTIETILISLRQEMLSSANKRL 144
>pdb|2QGX|A Chain A, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|B Chain B, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|C Chain C, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|D Chain D, Ubiquitin-Conjugating Enzyme E2q
Length = 169
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 10/49 (20%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 44 LPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVI-NQAWTPLYDLSNI 91
+N+PF P + ++ + G G +C+ ++ Q W+ Y + ++
Sbjct: 76 FKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSIESV 124
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVIN--QAW 82
+ GP T YE ++ +++ YP P + F+ KI + +G V I+ W
Sbjct: 47 ILGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKW 106
Query: 83 TPLYDLSNIFE 93
Y + + +
Sbjct: 107 QNSYSIKVVLQ 117
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVIN--QAW 82
+ GP T YE ++ +++ YP P + F+ KI + +G V I+ W
Sbjct: 75 IIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKW 134
Query: 83 TPLYDLSNIFE 93
Y + + +
Sbjct: 135 QNSYSIKVVLQ 145
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVIN--QAW 82
+ GP T YE ++ +++ YP P + F+ KI + +G V I+ W
Sbjct: 65 IIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKW 124
Query: 83 TPLYDLSNIFE 93
Y + + +
Sbjct: 125 QNSYSIKVVLQ 135
>pdb|1ZUO|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
pdb|1ZUO|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
Length = 186
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 44 LPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVI-NQAWTPLYDLSNI 91
+N+PF P + + + G G +C+ ++ Q W+ Y + ++
Sbjct: 97 FKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESV 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,735,580
Number of Sequences: 62578
Number of extensions: 157220
Number of successful extensions: 354
Number of sequences better than 100.0: 119
Number of HSP's better than 100.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 182
Number of HSP's gapped (non-prelim): 122
length of query: 109
length of database: 14,973,337
effective HSP length: 73
effective length of query: 36
effective length of database: 10,405,143
effective search space: 374585148
effective search space used: 374585148
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)