Query psy11961
Match_columns 109
No_of_seqs 106 out of 1105
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 23:24:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11961.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11961hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 2.1E-41 4.6E-46 232.1 7.6 106 1-108 1-125 (153)
2 KOG0417|consensus 100.0 1.1E-39 2.4E-44 220.3 7.9 99 8-107 3-119 (148)
3 KOG0419|consensus 100.0 1.1E-39 2.3E-44 216.2 7.0 103 1-106 1-121 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 5.8E-37 1.2E-41 210.8 9.2 100 7-107 3-120 (152)
5 PLN00172 ubiquitin conjugating 100.0 2.9E-36 6.3E-41 206.2 9.6 99 8-107 3-119 (147)
6 KOG0418|consensus 100.0 1.5E-35 3.2E-40 206.4 7.6 100 7-106 4-123 (200)
7 KOG0424|consensus 100.0 1.3E-34 2.8E-39 194.3 6.7 86 17-103 37-124 (158)
8 KOG0421|consensus 100.0 1.2E-33 2.7E-38 189.9 4.0 101 7-108 30-148 (175)
9 KOG0425|consensus 100.0 5.2E-33 1.1E-37 188.9 6.1 90 14-104 31-133 (171)
10 PF00179 UQ_con: Ubiquitin-con 100.0 3.2E-32 7E-37 184.1 8.1 90 17-107 26-117 (140)
11 KOG0426|consensus 100.0 1.5E-31 3.2E-36 177.7 6.6 99 5-104 3-132 (165)
12 cd00195 UBCc Ubiquitin-conjuga 100.0 6.4E-31 1.4E-35 178.0 8.6 87 17-104 27-114 (141)
13 smart00212 UBCc Ubiquitin-conj 100.0 3.7E-30 8E-35 175.0 9.6 86 17-103 27-113 (145)
14 KOG0416|consensus 100.0 8.3E-29 1.8E-33 170.4 6.7 100 6-105 3-117 (189)
15 KOG0427|consensus 99.9 3.1E-28 6.7E-33 161.7 6.7 96 6-102 15-127 (161)
16 KOG0422|consensus 99.9 9.4E-28 2E-32 160.5 8.9 99 7-107 3-121 (153)
17 KOG0420|consensus 99.9 5.8E-28 1.3E-32 166.4 5.6 103 4-107 26-147 (184)
18 KOG0423|consensus 99.9 1.1E-25 2.5E-30 155.6 4.2 82 22-104 43-124 (223)
19 KOG0894|consensus 99.9 1.6E-24 3.4E-29 154.2 7.9 97 1-102 1-118 (244)
20 KOG0428|consensus 99.8 7.3E-21 1.6E-25 138.0 7.3 95 4-102 9-123 (314)
21 KOG0895|consensus 99.7 3.6E-17 7.9E-22 136.4 7.0 89 10-101 874-971 (1101)
22 KOG0896|consensus 99.5 8.5E-15 1.8E-19 97.7 4.6 90 16-105 36-127 (138)
23 KOG0429|consensus 99.5 9.5E-14 2.1E-18 99.6 6.2 84 19-103 49-135 (258)
24 KOG0895|consensus 99.5 1.7E-13 3.7E-18 114.8 7.7 94 8-102 284-405 (1101)
25 PF14461 Prok-E2_B: Prokaryoti 98.7 4.6E-08 1E-12 65.7 6.0 68 34-102 34-107 (133)
26 KOG0897|consensus 98.6 5.6E-08 1.2E-12 63.5 3.3 64 38-101 13-77 (122)
27 PF05743 UEV: UEV domain; Int 98.3 1.6E-06 3.5E-11 57.5 4.9 68 32-101 42-117 (121)
28 KOG2391|consensus 96.7 0.006 1.3E-07 46.9 6.2 77 25-103 55-139 (365)
29 PF14457 Prok-E2_A: Prokaryoti 95.6 0.017 3.6E-07 40.3 3.6 63 39-102 56-127 (162)
30 PF08694 UFC1: Ubiquitin-fold 95.5 0.027 5.7E-07 38.6 4.0 84 8-92 26-135 (161)
31 PF05773 RWD: RWD domain; Int 94.5 0.071 1.5E-06 33.6 3.9 29 32-60 45-73 (113)
32 PF14462 Prok-E2_E: Prokaryoti 94.3 0.33 7.2E-06 32.3 6.8 68 29-100 35-120 (122)
33 smart00591 RWD domain in RING 93.6 0.1 2.2E-06 32.6 3.3 26 35-60 40-65 (107)
34 KOG3357|consensus 90.0 0.84 1.8E-05 30.9 4.6 82 10-92 31-138 (167)
35 PF06113 BRE: Brain and reprod 85.5 2.3 5E-05 32.9 5.2 59 32-97 61-122 (333)
36 cd00421 intradiol_dioxygenase 74.1 5.3 0.00012 27.0 3.5 25 35-59 65-90 (146)
37 cd03457 intradiol_dioxygenase_ 73.8 5.2 0.00011 28.4 3.6 26 34-59 85-110 (188)
38 PF14460 Prok-E2_D: Prokaryoti 71.6 9.4 0.0002 26.6 4.4 42 59-104 90-135 (175)
39 cd03459 3,4-PCD Protocatechuat 66.8 9.5 0.00021 26.3 3.5 25 35-59 72-101 (158)
40 PF09765 WD-3: WD-repeat regio 64.5 6.2 0.00013 29.9 2.5 81 5-100 98-187 (291)
41 PF06675 DUF1177: Protein of u 58.9 12 0.00027 28.0 3.1 51 8-58 153-210 (276)
42 TIGR02423 protocat_alph protoc 56.7 17 0.00037 26.0 3.4 25 34-58 95-124 (193)
43 KOG4018|consensus 56.2 12 0.00025 27.4 2.5 21 37-57 50-70 (215)
44 cd03463 3,4-PCD_alpha Protocat 54.8 19 0.00042 25.5 3.4 24 35-58 92-120 (185)
45 TIGR03737 PRTRC_B PRTRC system 54.5 29 0.00063 25.5 4.4 34 60-98 132-169 (228)
46 KOG0177|consensus 52.4 5.9 0.00013 28.4 0.5 60 39-100 99-165 (200)
47 KOG0662|consensus 46.7 17 0.00037 26.5 2.2 55 50-104 167-224 (292)
48 KOG0309|consensus 46.7 22 0.00047 31.0 3.0 22 38-59 468-490 (1081)
49 TIGR02439 catechol_proteo cate 45.6 31 0.00067 26.2 3.5 25 34-58 179-221 (285)
50 PF06113 BRE: Brain and reprod 43.3 38 0.00082 26.4 3.7 23 37-59 307-329 (333)
51 cd03461 1,2-HQD Hydroxyquinol 42.2 37 0.0008 25.7 3.4 25 34-58 171-213 (277)
52 KOG4445|consensus 40.1 34 0.00073 26.5 2.9 25 36-60 45-69 (368)
53 cd03460 1,2-CTD Catechol 1,2 d 39.6 43 0.00094 25.4 3.5 25 34-58 175-217 (282)
54 TIGR02438 catachol_actin catec 39.1 45 0.00098 25.3 3.5 25 34-58 183-225 (281)
55 cd03464 3,4-PCD_beta Protocate 38.9 46 0.001 24.3 3.4 24 35-58 122-152 (220)
56 TIGR02422 protocat_beta protoc 37.8 49 0.0011 24.1 3.4 25 34-58 116-147 (220)
57 smart00340 HALZ homeobox assoc 36.4 18 0.0004 19.7 0.7 16 7-22 20-35 (44)
58 TIGR02465 chlorocat_1_2 chloro 36.1 56 0.0012 24.3 3.5 25 34-58 149-191 (246)
59 PF14135 DUF4302: Domain of un 32.9 69 0.0015 23.2 3.6 45 21-67 32-100 (235)
60 KOG3696|consensus 32.7 36 0.00078 26.4 2.1 36 32-67 283-324 (334)
61 cd05845 Ig2_L1-CAM_like Second 29.9 1.2E+02 0.0026 18.9 3.9 26 33-60 16-41 (95)
62 cd07353 harmonin_N N-terminal 29.6 65 0.0014 19.5 2.4 27 81-107 31-57 (79)
63 cd03458 Catechol_intradiol_dio 29.4 82 0.0018 23.6 3.5 25 34-58 155-197 (256)
64 PF13950 Epimerase_Csub: UDP-g 28.6 58 0.0013 18.7 2.1 17 81-97 37-53 (62)
65 KOG1047|consensus 28.0 62 0.0014 27.1 2.8 28 32-60 249-279 (613)
66 cd03462 1,2-CCD chlorocatechol 26.7 97 0.0021 23.0 3.5 25 34-58 150-192 (247)
67 PF03366 YEATS: YEATS family; 26.4 1.3E+02 0.0028 18.4 3.5 40 19-60 2-41 (84)
68 COG2819 Predicted hydrolase of 26.3 1.1E+02 0.0023 23.1 3.6 30 30-59 15-46 (264)
69 PRK11700 hypothetical protein; 26.2 2.5E+02 0.0054 20.1 5.8 64 25-94 98-184 (187)
70 PF06468 Spond_N: Spondin_N; 25.2 80 0.0017 22.5 2.7 26 36-61 2-34 (196)
71 PF00775 Dioxygenase_C: Dioxyg 24.6 50 0.0011 23.2 1.6 25 34-58 82-124 (183)
72 PF11745 DUF3304: Protein of u 24.1 38 0.00082 22.0 0.8 21 69-89 49-69 (118)
73 PF14532 Sigma54_activ_2: Sigm 21.3 68 0.0015 20.7 1.6 34 5-41 4-39 (138)
74 KOG3203|consensus 20.8 48 0.001 23.1 0.8 15 59-75 49-63 (165)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-41 Score=232.09 Aligned_cols=106 Identities=43% Similarity=0.898 Sum_probs=97.2
Q ss_pred CCCCccccccchHhHHH------------------HhhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccc
Q psy11961 1 MSSPSAGTRRMNIDVIK------------------LIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIY 62 (109)
Q Consensus 1 ms~~~~~~~Rl~~d~~~------------------l~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~ 62 (109)
|++++ +.+||++|+++ +++|++.|.||++||||||+|++.|.||++||++||+|+|.+++|
T Consensus 1 ~~s~~-a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~ 79 (153)
T COG5078 1 MSSPS-ALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIF 79 (153)
T ss_pred CCchh-HHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCc
Confidence 45433 88999999984 456999999999999999999999999999999999999999999
Q ss_pred cCceeCCCCeEEccCCCCCCCCCCCHHHHHHHHHHhhcCCC-CCCCC
Q psy11961 63 HPNICEGSGTVCLNVINQAWTPLYDLSNIFECFLPQLLTPI-RTPLI 108 (109)
Q Consensus 63 HPnv~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~P~-~~~l~ 108 (109)
||||| .+|+||+++|.++|+|++++++||++|+++|.+|+ ++||.
T Consensus 80 HPNV~-~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln 125 (153)
T COG5078 80 HPNVD-PSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLN 125 (153)
T ss_pred CCCcC-CCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCC
Confidence 99999 79999999999999999999999999999999994 66653
No 2
>KOG0417|consensus
Probab=100.00 E-value=1.1e-39 Score=220.32 Aligned_cols=99 Identities=36% Similarity=0.863 Sum_probs=92.2
Q ss_pred cccchHhHHH-----------------HhhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCceeCCC
Q psy11961 8 TRRMNIDVIK-----------------LIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGS 70 (109)
Q Consensus 8 ~~Rl~~d~~~-----------------l~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~~~~ 70 (109)
.+||.+|.++ +.+|+++|.||.|||||||+|++.|.||++||++||+|+|.|+||||||+ ..
T Consensus 3 ~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~-~~ 81 (148)
T KOG0417|consen 3 SKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNID-SN 81 (148)
T ss_pred HHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcC-cc
Confidence 5588888874 45699999999999999999999999999999999999999999999999 79
Q ss_pred CeEEccCCCCCCCCCCCHHHHHHHHHHhhcCCC-CCCC
Q psy11961 71 GTVCLNVINQAWTPLYDLSNIFECFLPQLLTPI-RTPL 107 (109)
Q Consensus 71 G~icl~~l~~~W~p~~~i~~il~~i~~ll~~P~-~~~l 107 (109)
|+||+|+|.++|+|+++|..||++|+++|.+|+ ++||
T Consensus 82 G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL 119 (148)
T KOG0417|consen 82 GRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPL 119 (148)
T ss_pred ccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccc
Confidence 999999999999999999999999999999995 5555
No 3
>KOG0419|consensus
Probab=100.00 E-value=1.1e-39 Score=216.22 Aligned_cols=103 Identities=37% Similarity=0.866 Sum_probs=97.2
Q ss_pred CCCCccccccchHhHHHH-----------------hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeeccccc
Q psy11961 1 MSSPSAGTRRMNIDVIKL-----------------IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYH 63 (109)
Q Consensus 1 ms~~~~~~~Rl~~d~~~l-----------------~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~H 63 (109)
|| ++|.|||++|+++| |.|+++|+||++|||+||+|++.|.|+++||.+||.|+|.+..||
T Consensus 1 Ms--tpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFH 78 (152)
T KOG0419|consen 1 MS--TPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFH 78 (152)
T ss_pred CC--chHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccC
Confidence 78 77999999999955 669999999999999999999999999999999999999999999
Q ss_pred CceeCCCCeEEccCCCCCCCCCCCHHHHHHHHHHhhcCCC-CCC
Q psy11961 64 PNICEGSGTVCLNVINQAWTPLYDLSNIFECFLPQLLTPI-RTP 106 (109)
Q Consensus 64 Pnv~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~P~-~~~ 106 (109)
|||| ++|.+|+|+|+.+|+|+|++.+||.+||+||.+|+ ++|
T Consensus 79 PNvy-a~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sP 121 (152)
T KOG0419|consen 79 PNVY-ADGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSP 121 (152)
T ss_pred CCcC-CCCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCc
Confidence 9999 79999999999999999999999999999999995 443
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=5.8e-37 Score=210.75 Aligned_cols=100 Identities=35% Similarity=0.756 Sum_probs=93.6
Q ss_pred ccccchHhHHHH-----------------hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCceeCC
Q psy11961 7 GTRRMNIDVIKL-----------------IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEG 69 (109)
Q Consensus 7 ~~~Rl~~d~~~l-----------------~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~~~ 69 (109)
++|||++|+++| .+|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+ .
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~-~ 81 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNID-K 81 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceEC-C
Confidence 578999999966 4688899999999999999999999999999999999999999999999 5
Q ss_pred CCeEEccCCCCCCCCCCCHHHHHHHHHHhhcCCC-CCCC
Q psy11961 70 SGTVCLNVINQAWTPLYDLSNIFECFLPQLLTPI-RTPL 107 (109)
Q Consensus 70 ~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~P~-~~~l 107 (109)
+|.||+++|.++|+|++||.+||.+|+++|.+|+ ++||
T Consensus 82 ~G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pl 120 (152)
T PTZ00390 82 LGRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPL 120 (152)
T ss_pred CCeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCch
Confidence 9999999999999999999999999999999994 5555
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=2.9e-36 Score=206.23 Aligned_cols=99 Identities=35% Similarity=0.815 Sum_probs=92.1
Q ss_pred cccchHhHHHH-----------------hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCceeCCC
Q psy11961 8 TRRMNIDVIKL-----------------IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGS 70 (109)
Q Consensus 8 ~~Rl~~d~~~l-----------------~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~~~~ 70 (109)
.+||++|+++| .+|++.|.||++|||+||.|++.|.||++||++||+|+|.|+++||||+ .+
T Consensus 3 ~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~-~~ 81 (147)
T PLN00172 3 TKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNIN-SN 81 (147)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceEC-CC
Confidence 58999888865 5688899999999999999999999999999999999999999999999 59
Q ss_pred CeEEccCCCCCCCCCCCHHHHHHHHHHhhcCCC-CCCC
Q psy11961 71 GTVCLNVINQAWTPLYDLSNIFECFLPQLLTPI-RTPL 107 (109)
Q Consensus 71 G~icl~~l~~~W~p~~~i~~il~~i~~ll~~P~-~~~l 107 (109)
|.||+++|.++|+|+++|++||.+|+++|.+|+ ++||
T Consensus 82 G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~ 119 (147)
T PLN00172 82 GSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPL 119 (147)
T ss_pred CEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCch
Confidence 999999999999999999999999999999995 4444
No 6
>KOG0418|consensus
Probab=100.00 E-value=1.5e-35 Score=206.40 Aligned_cols=100 Identities=34% Similarity=0.808 Sum_probs=91.5
Q ss_pred ccccchHhHHHHhh--------------------CCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCce
Q psy11961 7 GTRRMNIDVIKLIE--------------------SKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNI 66 (109)
Q Consensus 7 ~~~Rl~~d~~~l~~--------------------w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv 66 (109)
+.+|+++|.+++.+ -+..|.||+|||||||+|.++|++|++|||+||+|+|.|.||||||
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnV 83 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNV 83 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCC
Confidence 67888888876533 3334999999999999999999999999999999999999999999
Q ss_pred eCCCCeEEccCCCCCCCCCCCHHHHHHHHHHhhcCCCCCC
Q psy11961 67 CEGSGTVCLNVINQAWTPLYDLSNIFECFLPQLLTPIRTP 106 (109)
Q Consensus 67 ~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~P~~~~ 106 (109)
+..+|.||+|++.++|.+++|+..+|++||++|+.|++++
T Consensus 84 Ss~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~d 123 (200)
T KOG0418|consen 84 SSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKD 123 (200)
T ss_pred CcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCC
Confidence 9889999999999999999999999999999999997664
No 7
>KOG0424|consensus
Probab=100.00 E-value=1.3e-34 Score=194.26 Aligned_cols=86 Identities=35% Similarity=0.748 Sum_probs=82.4
Q ss_pred HHhhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCceeCCCCeEEccCCCCC--CCCCCCHHHHHHH
Q psy11961 17 KLIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQA--WTPLYDLSNIFEC 94 (109)
Q Consensus 17 ~l~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~~~~G~icl~~l~~~--W~p~~~i~~il~~ 94 (109)
+|+.|.+.|.|++||+||||.|++++.|+++||.+||+++|.+++|||||| .+|.||+++|++. |+|+.||.+||++
T Consensus 37 nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~HPNVy-psgtVcLsiL~e~~~W~paitikqiL~g 115 (158)
T KOG0424|consen 37 NLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFHPNVY-PSGTVCLSILNEEKDWRPAITIKQILLG 115 (158)
T ss_pred eeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcCCCcC-CCCcEehhhhccccCCCchhhHHHHHHH
Confidence 568899999999999999999999999999999999999999999999999 6999999999754 9999999999999
Q ss_pred HHHhhcCCC
Q psy11961 95 FLPQLLTPI 103 (109)
Q Consensus 95 i~~ll~~P~ 103 (109)
||+||.+|+
T Consensus 116 IqdLL~~Pn 124 (158)
T KOG0424|consen 116 IQDLLDTPN 124 (158)
T ss_pred HHHHhcCCC
Confidence 999999995
No 8
>KOG0421|consensus
Probab=99.98 E-value=1.2e-33 Score=189.93 Aligned_cols=101 Identities=33% Similarity=0.729 Sum_probs=94.8
Q ss_pred ccccchHhHHHH-----------------hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCceeCC
Q psy11961 7 GTRRMNIDVIKL-----------------IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEG 69 (109)
Q Consensus 7 ~~~Rl~~d~~~l-----------------~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~~~ 69 (109)
..|||++|+..| +.|..+|.||++|+|+|-.|++.+.||.+||+.||+|+|.|+.|||||| .
T Consensus 30 V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD-~ 108 (175)
T KOG0421|consen 30 VTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVD-L 108 (175)
T ss_pred HHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCcc-c
Confidence 457999999865 5588889999999999999999999999999999999999999999999 7
Q ss_pred CCeEEccCCCCCCCCCCCHHHHHHHHHHhhcCC-CCCCCC
Q psy11961 70 SGTVCLNVINQAWTPLYDLSNIFECFLPQLLTP-IRTPLI 108 (109)
Q Consensus 70 ~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~P-~~~~l~ 108 (109)
.|.||+|+|.+.|+..|++++||++||++|-+| +++||-
T Consensus 109 ~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLN 148 (175)
T KOG0421|consen 109 SGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLN 148 (175)
T ss_pred cccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcch
Confidence 999999999999999999999999999999999 788873
No 9
>KOG0425|consensus
Probab=99.98 E-value=5.2e-33 Score=188.88 Aligned_cols=90 Identities=31% Similarity=0.768 Sum_probs=84.0
Q ss_pred hHHHHhhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCceeCCCCeEEccCCC-------------C
Q psy11961 14 DVIKLIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVIN-------------Q 80 (109)
Q Consensus 14 d~~~l~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~~~~G~icl~~l~-------------~ 80 (109)
|..++.+|.+.|+||++|.||||.|+..+.||.+||.+||+++|.+.+|||||| .+|.+|+++|. +
T Consensus 31 d~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy-~~G~vCISILH~pgdD~~gyE~~~e 109 (171)
T KOG0425|consen 31 DDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVY-EDGDVCISILHPPGDDPSGYELPSE 109 (171)
T ss_pred cCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcC-CCCCEEEEeecCCCCCcccCCChhh
Confidence 334677899999999999999999999999999999999999999999999999 69999999995 4
Q ss_pred CCCCCCCHHHHHHHHHHhhcCCCC
Q psy11961 81 AWTPLYDLSNIFECFLPQLLTPIR 104 (109)
Q Consensus 81 ~W~p~~~i~~il~~i~~ll~~P~~ 104 (109)
.|+|..|+++|+++|.+||.+||.
T Consensus 110 rW~Pv~tvetIllSiIsmL~~PN~ 133 (171)
T KOG0425|consen 110 RWLPVQTVETILLSIISMLNSPND 133 (171)
T ss_pred ccCCccchhHhHHHHHHHHcCCCC
Confidence 799999999999999999999963
No 10
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=99.97 E-value=3.2e-32 Score=184.06 Aligned_cols=90 Identities=40% Similarity=0.933 Sum_probs=78.8
Q ss_pred HHhhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCceeCCCCeEEccCCCC-CCCCCCCHHHHHHHH
Q psy11961 17 KLIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQ-AWTPLYDLSNIFECF 95 (109)
Q Consensus 17 ~l~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~~~~G~icl~~l~~-~W~p~~~i~~il~~i 95 (109)
++.+|++.|.||++|||+||.|+++|.||++||++||+|+|.|+++||||+ .+|.||+++|.. .|+|++++.+||.+|
T Consensus 26 ~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~-~~G~icl~~l~~~~W~p~~~i~~il~~i 104 (140)
T PF00179_consen 26 NLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNID-ENGRICLDILNPESWSPSYTIESILLSI 104 (140)
T ss_dssp ETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB--TTSBBGHGGGTTTTC-TTSHHHHHHHHH
T ss_pred ChheEEEEEeccCccceeccccccccccccccccccccccccccccccccc-ccccchhhhhhcccCCcccccccHHHHH
Confidence 467799999999999999999999999999999999999999999999999 799999999974 599999999999999
Q ss_pred HHhhcCC-CCCCC
Q psy11961 96 LPQLLTP-IRTPL 107 (109)
Q Consensus 96 ~~ll~~P-~~~~l 107 (109)
+++|.+| .++++
T Consensus 105 ~~ll~~p~~~~~~ 117 (140)
T PF00179_consen 105 QSLLSEPNPEDPL 117 (140)
T ss_dssp HHHHHSTCTTSTS
T ss_pred HHHHhCCCCCCcc
Confidence 9999999 44443
No 11
>KOG0426|consensus
Probab=99.97 E-value=1.5e-31 Score=177.74 Aligned_cols=99 Identities=29% Similarity=0.692 Sum_probs=93.1
Q ss_pred ccccccchHhHHHH------------------hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCce
Q psy11961 5 SAGTRRMNIDVIKL------------------IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNI 66 (109)
Q Consensus 5 ~~~~~Rl~~d~~~l------------------~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv 66 (109)
..|.|||.+|.++| ++|.+.|.||++|+|+||+|..++.||.|||.+||+++|...+|||||
T Consensus 3 ~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNi 82 (165)
T KOG0426|consen 3 GTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNI 82 (165)
T ss_pred hhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCcc
Confidence 56899999999865 669999999999999999999999999999999999999999999999
Q ss_pred eCCCCeEEccCCC-------------CCCCCCCCHHHHHHHHHHhhcCCCC
Q psy11961 67 CEGSGTVCLNVIN-------------QAWTPLYDLSNIFECFLPQLLTPIR 104 (109)
Q Consensus 67 ~~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ll~~P~~ 104 (109)
| .+|+||+++|. +.|+|..+++.||+++.+||++|++
T Consensus 83 y-~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNd 132 (165)
T KOG0426|consen 83 Y-PDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPND 132 (165)
T ss_pred c-CCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCc
Confidence 9 79999999985 5799999999999999999999965
No 12
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=99.97 E-value=6.4e-31 Score=178.01 Aligned_cols=87 Identities=40% Similarity=0.917 Sum_probs=81.9
Q ss_pred HHhhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCceeCCCCeEEccCCCCC-CCCCCCHHHHHHHH
Q psy11961 17 KLIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQA-WTPLYDLSNIFECF 95 (109)
Q Consensus 17 ~l~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~~~~G~icl~~l~~~-W~p~~~i~~il~~i 95 (109)
++.+|++.+.||++|||+||.|++.|.||++||++||+|+|.+.++||||+ .+|.||++++... |+|++++.+||.+|
T Consensus 27 ~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~-~~G~icl~~l~~~~W~p~~~l~~il~~i 105 (141)
T cd00195 27 NLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVD-ENGKICLSILKTHGWSPAYTLRTVLLSL 105 (141)
T ss_pred ChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCC-CCCCCchhhcCCCCcCCcCcHHHHHHHH
Confidence 345688889999999999999999999999999999999999999999999 7999999999876 99999999999999
Q ss_pred HHhhcCCCC
Q psy11961 96 LPQLLTPIR 104 (109)
Q Consensus 96 ~~ll~~P~~ 104 (109)
+++|.+|+.
T Consensus 106 ~~~l~~p~~ 114 (141)
T cd00195 106 QSLLNEPNP 114 (141)
T ss_pred HHHHhCCCC
Confidence 999999943
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=99.97 E-value=3.7e-30 Score=175.00 Aligned_cols=86 Identities=38% Similarity=0.898 Sum_probs=82.8
Q ss_pred HHhhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCceeCCCCeEEccCCC-CCCCCCCCHHHHHHHH
Q psy11961 17 KLIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVIN-QAWTPLYDLSNIFECF 95 (109)
Q Consensus 17 ~l~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~~~~G~icl~~l~-~~W~p~~~i~~il~~i 95 (109)
++.+|++.+.||++|||+||.|++.|.||++||++||+|+|.++++||||+ .+|.||++.+. ++|+|++++.++|.+|
T Consensus 27 ~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~-~~G~icl~~l~~~~W~p~~~l~~il~~i 105 (145)
T smart00212 27 NLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVD-SSGEICLDILKQEKWSPATTLETVLLSI 105 (145)
T ss_pred ChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeEC-CCCCEehhhcCCCCCCCCCcHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999999 59999999998 8999999999999999
Q ss_pred HHhhcCCC
Q psy11961 96 LPQLLTPI 103 (109)
Q Consensus 96 ~~ll~~P~ 103 (109)
+++|.+|+
T Consensus 106 ~~~l~~p~ 113 (145)
T smart00212 106 QSLLSEPN 113 (145)
T ss_pred HHHHhCCC
Confidence 99999994
No 14
>KOG0416|consensus
Probab=99.95 E-value=8.3e-29 Score=170.38 Aligned_cols=100 Identities=65% Similarity=1.193 Sum_probs=89.0
Q ss_pred cccccchHhHHHHhh--------------CCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCceeCCCC
Q psy11961 6 AGTRRMNIDVIKLIE--------------SKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSG 71 (109)
Q Consensus 6 ~~~~Rl~~d~~~l~~--------------w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~~~~G 71 (109)
.+.||+..|...|.. .++.+.||.+||||||++++++.+|++||++.|.|.|.++||||||++.+|
T Consensus 3 ~~~rRid~Dv~KL~~s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SG 82 (189)
T KOG0416|consen 3 SGKRRIDTDVMKLLMSDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASG 82 (189)
T ss_pred CcccchhhHHHHHHhcCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccC
Confidence 468999999987644 344499999999999999999999999999999999999999999999999
Q ss_pred eEEccCCCCCCCCCCCHHHHHHHHH-HhhcCCCCC
Q psy11961 72 TVCLNVINQAWTPLYDLSNIFECFL-PQLLTPIRT 105 (109)
Q Consensus 72 ~icl~~l~~~W~p~~~i~~il~~i~-~ll~~P~~~ 105 (109)
.||+|.+++.|+|.+.+..|+..+. .||.-||.+
T Consensus 83 sVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~ 117 (189)
T KOG0416|consen 83 SVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPS 117 (189)
T ss_pred ccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCC
Confidence 9999999999999999999986654 567778654
No 15
>KOG0427|consensus
Probab=99.95 E-value=3.1e-28 Score=161.68 Aligned_cols=96 Identities=26% Similarity=0.606 Sum_probs=89.9
Q ss_pred cccccchHhHHH----------------HhhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeeccc-ccCceeC
Q psy11961 6 AGTRRMNIDVIK----------------LIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKI-YHPNICE 68 (109)
Q Consensus 6 ~~~~Rl~~d~~~----------------l~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i-~HPnv~~ 68 (109)
.+.+||++|+.+ |++|...+.|.+||.|+|.+|.+.++||+.||++.|+|.|..++ .||+||
T Consensus 15 ~at~RLqKEl~e~q~~pP~G~~~~v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiY- 93 (161)
T KOG0427|consen 15 IATNRLQKELSEWQNNPPTGFKHRVTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIY- 93 (161)
T ss_pred HHHHHHHHHHHHHhcCCCCcceeecccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCcee-
Confidence 356799999984 57799999999999999999999999999999999999999876 899999
Q ss_pred CCCeEEccCCCCCCCCCCCHHHHHHHHHHhhcCC
Q psy11961 69 GSGTVCLNVINQAWTPLYDLSNIFECFLPQLLTP 102 (109)
Q Consensus 69 ~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~P 102 (109)
++|.||+++|.+.|+|++++.+|+++|.+||++-
T Consensus 94 SNGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs 127 (161)
T KOG0427|consen 94 SNGHICLDILYDSWSPAMSVQSVCLSILSMLSSS 127 (161)
T ss_pred cCCeEEEEeecccCCcchhhHHHHHHHHHHHccC
Confidence 8999999999999999999999999999999986
No 16
>KOG0422|consensus
Probab=99.95 E-value=9.4e-28 Score=160.51 Aligned_cols=99 Identities=33% Similarity=0.752 Sum_probs=88.6
Q ss_pred ccccchHhHHHHhh------------------CCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCceeC
Q psy11961 7 GTRRMNIDVIKLIE------------------SKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICE 68 (109)
Q Consensus 7 ~~~Rl~~d~~~l~~------------------w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~~ 68 (109)
+.|||.+|+.+|.+ |++.+. |.+-||..|.|+++|.||.+|||+||+|.|.|.+||||||+
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe 81 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDE 81 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCC
Confidence 56888888887644 666677 79999999999999999999999999999999999999995
Q ss_pred CCCeEEccCC-CCCCCCCCCHHHHHHHHHHhhcCCC-CCCC
Q psy11961 69 GSGTVCLNVI-NQAWTPLYDLSNIFECFLPQLLTPI-RTPL 107 (109)
Q Consensus 69 ~~G~icl~~l-~~~W~p~~~i~~il~~i~~ll~~P~-~~~l 107 (109)
.|.+|+.++ .++|+|+....+||..|.+++.+|. +.||
T Consensus 82 -~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~pl 121 (153)
T KOG0422|consen 82 -KGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPL 121 (153)
T ss_pred -CCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccc
Confidence 699999999 5899999999999999999999994 4443
No 17
>KOG0420|consensus
Probab=99.94 E-value=5.8e-28 Score=166.37 Aligned_cols=103 Identities=31% Similarity=0.658 Sum_probs=91.7
Q ss_pred CccccccchHhHHHHh-------hCCc-----------eeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCc
Q psy11961 4 PSAGTRRMNIDVIKLI-------ESKH-----------ELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPN 65 (109)
Q Consensus 4 ~~~~~~Rl~~d~~~l~-------~w~~-----------~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPn 65 (109)
.|+++-|+++|+.++. .|.. ...-|+++-|+||.|.|.+.+|+.||+.||+|+|.|.+||||
T Consensus 26 ~s~a~lrl~~di~elnLp~t~~~s~~~~~~d~~~~~~elti~PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPN 105 (184)
T KOG0420|consen 26 VSAALLRLKKDILELNLPPTCSLSFPDSPDDLNNLEFELTITPDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPN 105 (184)
T ss_pred ccHHHHHHHhhhhhccCCCccccccccCCcccccceEEEEEccCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCC
Confidence 4677889999998762 1222 156699999999999999999999999999999999999999
Q ss_pred eeCCCCeEEccCCCCCCCCCCCHHHHHHHHHHhhcCC-CCCCC
Q psy11961 66 ICEGSGTVCLNVINQAWTPLYDLSNIFECFLPQLLTP-IRTPL 107 (109)
Q Consensus 66 v~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~P-~~~~l 107 (109)
|| .+|.||+++|.++|+|+.+|.+|+.+|+.+|.+| .++||
T Consensus 106 Id-~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpL 147 (184)
T KOG0420|consen 106 ID-LDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPL 147 (184)
T ss_pred cC-CcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccc
Confidence 99 6999999999999999999999999999999999 56666
No 18
>KOG0423|consensus
Probab=99.92 E-value=1.1e-25 Score=155.59 Aligned_cols=82 Identities=27% Similarity=0.733 Sum_probs=78.8
Q ss_pred CceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCceeCCCCeEEccCCCCCCCCCCCHHHHHHHHHHhhcC
Q psy11961 22 KHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTPLYDLSNIFECFLPQLLT 101 (109)
Q Consensus 22 ~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~ 101 (109)
.+.|.||.||||++|.|++.+.+..|||.+||+-+|+|.||||||. ++|.||.+.|..+|+|++.|..||+.|+.+|..
T Consensus 43 qa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVa-aNGEICVNtLKkDW~p~LGirHvLltikCLLI~ 121 (223)
T KOG0423|consen 43 QADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVA-ANGEICVNTLKKDWNPSLGIRHVLLTIKCLLIE 121 (223)
T ss_pred HhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcc-cCceehhhhhhcccCcccchhhHhhhhheeeec
Confidence 4459999999999999999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred CCC
Q psy11961 102 PIR 104 (109)
Q Consensus 102 P~~ 104 (109)
|++
T Consensus 122 PnP 124 (223)
T KOG0423|consen 122 PNP 124 (223)
T ss_pred CCh
Confidence 964
No 19
>KOG0894|consensus
Probab=99.91 E-value=1.6e-24 Score=154.17 Aligned_cols=97 Identities=31% Similarity=0.644 Sum_probs=85.5
Q ss_pred CCCCccccccchHhHHH-----------------HhhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeeccccc
Q psy11961 1 MSSPSAGTRRMNIDVIK-----------------LIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYH 63 (109)
Q Consensus 1 ms~~~~~~~Rl~~d~~~-----------------l~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~H 63 (109)
|++ .++.|||++|... +.+||.++.||++|||+||.|+..|.||++||++||.|++.|
T Consensus 1 ma~-k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiT---- 75 (244)
T KOG0894|consen 1 MAS-KAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMIT---- 75 (244)
T ss_pred Ccc-hHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEEC----
Confidence 454 4778999999984 467999999999999999999999999999999999999999
Q ss_pred Ccee-CCCCeEEccCCC---CCCCCCCCHHHHHHHHHHhhcCC
Q psy11961 64 PNIC-EGSGTVCLNVIN---QAWTPLYDLSNIFECFLPQLLTP 102 (109)
Q Consensus 64 Pnv~-~~~G~icl~~l~---~~W~p~~~i~~il~~i~~ll~~P 102 (109)
||-- ..+-++|+++.+ +.|+|+|++.+||.+|.++|.+-
T Consensus 76 PNGRFktntRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~ 118 (244)
T KOG0894|consen 76 PNGRFKTNTRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTED 118 (244)
T ss_pred CCCceecCceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcC
Confidence 5553 345689998874 89999999999999999999875
No 20
>KOG0428|consensus
Probab=99.83 E-value=7.3e-21 Score=137.96 Aligned_cols=95 Identities=28% Similarity=0.610 Sum_probs=84.7
Q ss_pred CccccccchHhHH----------------HHhhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCcee
Q psy11961 4 PSAGTRRMNIDVI----------------KLIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNIC 67 (109)
Q Consensus 4 ~~~~~~Rl~~d~~----------------~l~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~ 67 (109)
.+++.|||++|.. +|++|+..|+||.+|-||||+|+.+|.||.|||++||.+..+| ||--
T Consensus 9 KnpaVkRlmkEa~El~~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLT----pNGR 84 (314)
T KOG0428|consen 9 KNPAVKRLMKEAAELKDPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLT----PNGR 84 (314)
T ss_pred cCHHHHHHHHHHHHhcCchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEc----CCCc
Confidence 5789999999887 4578999999999999999999999999999999999999999 5553
Q ss_pred -CCCCeEEccCCC---CCCCCCCCHHHHHHHHHHhhcCC
Q psy11961 68 -EGSGTVCLNVIN---QAWTPLYDLSNIFECFLPQLLTP 102 (109)
Q Consensus 68 -~~~G~icl~~l~---~~W~p~~~i~~il~~i~~ll~~P 102 (109)
+.+-+||+++.. +.|.|+|+|+..|+.|..+|-+-
T Consensus 85 FE~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt~ 123 (314)
T KOG0428|consen 85 FEVNKKICLSISGYHPETWQPSWSIRTALLALIGFMPTK 123 (314)
T ss_pred eeeCceEEEEecCCCccccCcchhHHHHHHHHHccccCC
Confidence 456789999985 88999999999999999988654
No 21
>KOG0895|consensus
Probab=99.69 E-value=3.6e-17 Score=136.43 Aligned_cols=89 Identities=25% Similarity=0.611 Sum_probs=77.5
Q ss_pred cchHhHHHHhhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeec--ccccCceeCCCCeEEccCCC-------C
Q psy11961 10 RMNIDVIKLIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMN--KIYHPNICEGSGTVCLNVIN-------Q 80 (109)
Q Consensus 10 Rl~~d~~~l~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t--~i~HPnv~~~~G~icl~~l~-------~ 80 (109)
|.-.|..+|+ .+.|.||.||||+.|.|.|+|.||++||.+||.|...+ -.++||+| .+|+||+++|+ +
T Consensus 874 r~~e~r~d~~--~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly-~~g~vc~s~l~tw~g~~~e 950 (1101)
T KOG0895|consen 874 RAYEDRMDLL--RAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLY-EDGKVCLSLLNTWHGRGNE 950 (1101)
T ss_pred EechHHHHHH--HHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccc-cccceehhhhccccCCCcc
Confidence 4444444554 56699999999999999999999999999999999996 46999999 59999999996 6
Q ss_pred CCCCCCCHHHHHHHHHHhhcC
Q psy11961 81 AWTPLYDLSNIFECFLPQLLT 101 (109)
Q Consensus 81 ~W~p~~~i~~il~~i~~ll~~ 101 (109)
.|+|+.++.+||.+||.|+..
T Consensus 951 ~w~~~s~~lq~l~s~q~l~l~ 971 (1101)
T KOG0895|consen 951 VWNPSSSILQVLVSIQGLVLN 971 (1101)
T ss_pred ccCcchhHHHHHHHhhhhhcc
Confidence 799999999999999999653
No 22
>KOG0896|consensus
Probab=99.53 E-value=8.5e-15 Score=97.67 Aligned_cols=90 Identities=19% Similarity=0.394 Sum_probs=80.1
Q ss_pred HHHhhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCceeCCCCeEEccCCC--CCCCCCCCHHHHHH
Q psy11961 16 IKLIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVIN--QAWTPLYDLSNIFE 93 (109)
Q Consensus 16 ~~l~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~~~~G~icl~~l~--~~W~p~~~i~~il~ 93 (109)
..|.+|...|+||+.|+||+-+|.+.|...++||..||+|+|.+.+--..|...+|.|.-..+. ..|+-++++..+|.
T Consensus 36 mtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~ 115 (138)
T KOG0896|consen 36 MTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVNSSNGVVDPRDITVLARWQRSYSIKMVLG 115 (138)
T ss_pred ceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccccCCCccCccccchhhcccccchhhHHHH
Confidence 3578999999999999999999999999999999999999999999999888667787765443 78999999999999
Q ss_pred HHHHhhcCCCCC
Q psy11961 94 CFLPQLLTPIRT 105 (109)
Q Consensus 94 ~i~~ll~~P~~~ 105 (109)
+++.+|.+..+-
T Consensus 116 ~lr~~m~~~eN~ 127 (138)
T KOG0896|consen 116 QLRKEMMSKENR 127 (138)
T ss_pred hhhHHHHHHHhh
Confidence 999988877443
No 23
>KOG0429|consensus
Probab=99.47 E-value=9.5e-14 Score=99.60 Aligned_cols=84 Identities=24% Similarity=0.459 Sum_probs=75.3
Q ss_pred hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCC--CCCeeeeecccccCceeCCCCeEEccCCCCCCCCC-CCHHHHHHHH
Q psy11961 19 IESKHELFGPRDTPYEGGVWKVRVHLPENYPF--KSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTPL-YDLSNIFECF 95 (109)
Q Consensus 19 ~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~--~pP~v~f~t~i~HPnv~~~~G~icl~~l~~~W~p~-~~i~~il~~i 95 (109)
..|-++|++ ..+.|+||+|+|.|.+|++||. +.|+|.|.+.++||+|++.++.+|+......|+-. ..|.+||..+
T Consensus 49 l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~skeLdl~raf~eWRk~ehhiwqvL~yl 127 (258)
T KOG0429|consen 49 LLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKSKELDLNRAFPEWRKEEHHIWQVLVYL 127 (258)
T ss_pred ceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCccceeHhhhhhhhhccccHHHHHHHHH
Confidence 347888886 6678999999999999999995 68999999999999999999999998876669876 6799999999
Q ss_pred HHhhcCCC
Q psy11961 96 LPQLLTPI 103 (109)
Q Consensus 96 ~~ll~~P~ 103 (109)
|..+.+|.
T Consensus 128 qriF~dpd 135 (258)
T KOG0429|consen 128 QRIFYDPD 135 (258)
T ss_pred HHHhcCcc
Confidence 99999994
No 24
>KOG0895|consensus
Probab=99.46 E-value=1.7e-13 Score=114.81 Aligned_cols=94 Identities=26% Similarity=0.636 Sum_probs=81.4
Q ss_pred cccchHhHHHHhh-----------------CCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecc---cccCcee
Q psy11961 8 TRRMNIDVIKLIE-----------------SKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNK---IYHPNIC 67 (109)
Q Consensus 8 ~~Rl~~d~~~l~~-----------------w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~---i~HPnv~ 67 (109)
.+|+++|++.+.+ -++.|.||.||||++|+|.|+|-||..||..||.|.+.+. .++||.|
T Consensus 284 skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlY 363 (1101)
T KOG0895|consen 284 SKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLY 363 (1101)
T ss_pred HHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCcc
Confidence 4577777775433 3445999999999999999999999999999999999975 6999999
Q ss_pred CCCCeEEccCCC-------CCCCCC-CCHHHHHHHHHHhhcCC
Q psy11961 68 EGSGTVCLNVIN-------QAWTPL-YDLSNIFECFLPQLLTP 102 (109)
Q Consensus 68 ~~~G~icl~~l~-------~~W~p~-~~i~~il~~i~~ll~~P 102 (109)
.+|+||+++|. +.|+|. .+|.++|.+||.++..-
T Consensus 364 -n~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 364 -NDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred -cCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence 59999999984 679999 88999999999998654
No 25
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.70 E-value=4.6e-08 Score=65.73 Aligned_cols=68 Identities=21% Similarity=0.538 Sum_probs=60.9
Q ss_pred CCCEEEEEEEcCCCCCCCCCeeeeeccc---ccCceeCCCCeEEc---cCCCCCCCCCCCHHHHHHHHHHhhcCC
Q psy11961 34 EGGVWKVRVHLPENYPFKSPSIGFMNKI---YHPNICEGSGTVCL---NVINQAWTPLYDLSNIFECFLPQLLTP 102 (109)
Q Consensus 34 ~gg~~~~~i~f~~~yP~~pP~v~f~t~i---~HPnv~~~~G~icl---~~l~~~W~p~~~i~~il~~i~~ll~~P 102 (109)
.|+.+.++|.+|++||..||.|....+. +-|||+ .+|.+|+ ...-+.|.|.-.+.++|.+.+.+|.+-
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~-~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~~ 107 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVE-SDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLEDG 107 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEc-CCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999988644 689999 6999999 667799999999999999999988755
No 26
>KOG0897|consensus
Probab=98.57 E-value=5.6e-08 Score=63.54 Aligned_cols=64 Identities=16% Similarity=0.440 Sum_probs=52.2
Q ss_pred EEEEEEcCCCCCCCCCeeeeecccccCceeCCCCeEEccCC-CCCCCCCCCHHHHHHHHHHhhcC
Q psy11961 38 WKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVI-NQAWTPLYDLSNIFECFLPQLLT 101 (109)
Q Consensus 38 ~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~~~~G~icl~~l-~~~W~p~~~i~~il~~i~~ll~~ 101 (109)
.-+.+.|+++||+.||.++...++..-.-...+|.||+.++ .++|+.+|+++.++.+|-.++..
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVk 77 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVK 77 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhc
Confidence 34577899999999999998876544433335899999999 58999999999999999888754
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.28 E-value=1.6e-06 Score=57.54 Aligned_cols=68 Identities=22% Similarity=0.505 Sum_probs=47.5
Q ss_pred CCCCCEEE--EEEEcCCCCCCCCCeeeeeccc-----ccCceeCCCCeEEccCCCCCCCC-CCCHHHHHHHHHHhhcC
Q psy11961 32 PYEGGVWK--VRVHLPENYPFKSPSIGFMNKI-----YHPNICEGSGTVCLNVINQAWTP-LYDLSNIFECFLPQLLT 101 (109)
Q Consensus 32 py~gg~~~--~~i~f~~~yP~~pP~v~f~t~i-----~HPnv~~~~G~icl~~l~~~W~p-~~~i~~il~~i~~ll~~ 101 (109)
.|+|..|. +.|-+|.+||.+||.|...-.. -+.+|| .+|+|.+..|. +|++ +.++.+++..+++.|.+
T Consensus 42 ~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd-~~G~v~~pyL~-~W~~~~s~L~~lv~~l~~~F~~ 117 (121)
T PF05743_consen 42 TYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVD-SNGRVYLPYLQ-NWNPPSSNLVDLVQELQAVFSE 117 (121)
T ss_dssp CCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB--TTSBB-SHHHH-T--TTTS-HHHHHHHHHHCCCH
T ss_pred ccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeEC-CCCCEeCchhc-cCCCCCCCHHHHHHHHHHHHhH
Confidence 68888885 5566899999999999776321 233999 79999988874 7877 78999999998887753
No 28
>KOG2391|consensus
Probab=96.69 E-value=0.006 Score=46.93 Aligned_cols=77 Identities=23% Similarity=0.445 Sum_probs=60.3
Q ss_pred eeCCCCCCCCCCEEEEEEE--cCCCCCCCCCeeeee-cc----cccCceeCCCCeEEccCCCCCCC-CCCCHHHHHHHHH
Q psy11961 25 LFGPRDTPYEGGVWKVRVH--LPENYPFKSPSIGFM-NK----IYHPNICEGSGTVCLNVINQAWT-PLYDLSNIFECFL 96 (109)
Q Consensus 25 i~Gp~~tpy~gg~~~~~i~--f~~~yP~~pP~v~f~-t~----i~HPnv~~~~G~icl~~l~~~W~-p~~~i~~il~~i~ 96 (109)
+.|---.+|.|..|.+=|. +.+.||+.||.+... |. -.|-+|+ .+|+|.+..|+ .|. |++++..++..+.
T Consensus 55 ~~GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd-~nG~V~LPYLh-~W~~pssdLv~Liq~l~ 132 (365)
T KOG2391|consen 55 LDGTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVD-PNGKVYLPYLH-NWDPPSSDLVGLIQELI 132 (365)
T ss_pred ccCcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccC-CCCeEechhhc-cCCCccchHHHHHHHHH
Confidence 4555556889988876555 699999999999666 21 2489999 79999999996 576 5688999998888
Q ss_pred HhhcCCC
Q psy11961 97 PQLLTPI 103 (109)
Q Consensus 97 ~ll~~P~ 103 (109)
+.|.++.
T Consensus 133 a~f~~~p 139 (365)
T KOG2391|consen 133 AAFSEDP 139 (365)
T ss_pred HHhcCCC
Confidence 8887763
No 29
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.62 E-value=0.017 Score=40.26 Aligned_cols=63 Identities=17% Similarity=0.417 Sum_probs=48.4
Q ss_pred EEEEEcCCCCCCCCCeeeeecccc---cCceeCCC-----CeEEccCCC-CCCCCCCCHHHHHHHHHHhhcCC
Q psy11961 39 KVRVHLPENYPFKSPSIGFMNKIY---HPNICEGS-----GTVCLNVIN-QAWTPLYDLSNIFECFLPQLLTP 102 (109)
Q Consensus 39 ~~~i~f~~~yP~~pP~v~f~t~i~---HPnv~~~~-----G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~P 102 (109)
.+.|.|+.+||..+|.|.+....| +||+. .. ..+|+.--. ..|.++.+++.+|..|+.-|.+-
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~-~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~a 127 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQN-PGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRDA 127 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccC-CCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHHH
Confidence 467899999999999877774332 46665 23 689986653 67999999999999998876544
No 30
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=95.45 E-value=0.027 Score=38.57 Aligned_cols=84 Identities=18% Similarity=0.370 Sum_probs=44.0
Q ss_pred cccchHhHHHHh-----------hCCceeeCCCCCCCCCCE----------EEEEEEcCCCCCCCCCeeeeecccc-cCc
Q psy11961 8 TRRMNIDVIKLI-----------ESKHELFGPRDTPYEGGV----------WKVRVHLPENYPFKSPSIGFMNKIY-HPN 65 (109)
Q Consensus 8 ~~Rl~~d~~~l~-----------~w~~~i~Gp~~tpy~gg~----------~~~~i~f~~~yP~~pP~v~f~t~i~-HPn 65 (109)
..||..|...|- .|--.=.-++||-|.|.. |.+++++|..||..+|.+....--- -.-
T Consensus 26 ~~RLKEEy~aLI~Yv~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeLdGKTaK 105 (161)
T PF08694_consen 26 VQRLKEEYQALIKYVENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIALPELDGKTAK 105 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-GGGTTT-SS
T ss_pred HHHHHHHHHHHHHHHHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceeccccCCchhh
Confidence 348888887652 254445667888776543 3455667999999999997764221 124
Q ss_pred eeCCCCeEEccCCC-CCC---CCCCCHHHHH
Q psy11961 66 ICEGSGTVCLNVIN-QAW---TPLYDLSNIF 92 (109)
Q Consensus 66 v~~~~G~icl~~l~-~~W---~p~~~i~~il 92 (109)
.| ..|+||++... .-| .|.++|...+
T Consensus 106 MY-RGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 106 MY-RGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp BC-CCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred hh-cCceEeeecccchhhhhcCCchhHHHHH
Confidence 46 58999998753 334 5778887765
No 31
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=94.46 E-value=0.071 Score=33.56 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=21.2
Q ss_pred CCCCCEEEEEEEcCCCCCCCCCeeeeecc
Q psy11961 32 PYEGGVWKVRVHLPENYPFKSPSIGFMNK 60 (109)
Q Consensus 32 py~gg~~~~~i~f~~~yP~~pP~v~f~t~ 60 (109)
.-....+++.+.||++||..+|.|...+.
T Consensus 45 ~~~~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 45 SSSFPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp TTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred cccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 34466789999999999999999987764
No 32
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=94.27 E-value=0.33 Score=32.34 Aligned_cols=68 Identities=18% Similarity=0.299 Sum_probs=47.1
Q ss_pred CCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCceeCCC-CeE--EccCC--------------CCCCCCCC-CHHH
Q psy11961 29 RDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGS-GTV--CLNVI--------------NQAWTPLY-DLSN 90 (109)
Q Consensus 29 ~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~~~~-G~i--cl~~l--------------~~~W~p~~-~i~~ 90 (109)
+.+.|.+..-.+.|.+|+.||..+|...+..+ -+-..+ |.+ |-+.. +..|+|.. +|.+
T Consensus 35 P~G~y~~~~~dili~iP~gYP~~~~DmfY~~P----~L~~~~G~~iP~~~~~~~~~~G~~wQrWSRH~~~W~P~~D~l~T 110 (122)
T PF14462_consen 35 PEGKYNHNEVDILILIPPGYPDAPLDMFYVYP----PLKLADGGPIPNAAEVTQTFDGRTWQRWSRHNNPWRPGVDDLWT 110 (122)
T ss_pred CCCccCccceEEEEECCCCCCCCCCCcEEECC----ceEccCCCcCCchhcchhhcCCeeeeeecCCCCCCCCCCCcHHH
Confidence 45568889999999999999999988766653 222222 223 32221 25699986 5888
Q ss_pred HHHHHHHhhc
Q psy11961 91 IFECFLPQLL 100 (109)
Q Consensus 91 il~~i~~ll~ 100 (109)
.|..|...|.
T Consensus 111 ~l~~v~~~L~ 120 (122)
T PF14462_consen 111 HLARVEHALA 120 (122)
T ss_pred HHHHHHHHHh
Confidence 8888887764
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=93.55 E-value=0.1 Score=32.63 Aligned_cols=26 Identities=38% Similarity=0.663 Sum_probs=22.1
Q ss_pred CCEEEEEEEcCCCCCCCCCeeeeecc
Q psy11961 35 GGVWKVRVHLPENYPFKSPSIGFMNK 60 (109)
Q Consensus 35 gg~~~~~i~f~~~yP~~pP~v~f~t~ 60 (109)
.-.+.+.+.||++||..+|.|.+.+.
T Consensus 40 ~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 40 YVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred ceEEEEEEECCCCCCCCCCCeEEECC
Confidence 44588999999999999999988763
No 34
>KOG3357|consensus
Probab=89.97 E-value=0.84 Score=30.90 Aligned_cols=82 Identities=20% Similarity=0.388 Sum_probs=50.8
Q ss_pred cchHhHHHHhh-----------CCceeeCCCCCCCCCCE----------EEEEEEcCCCCCCCCCeeeeeccccc-Ccee
Q psy11961 10 RMNIDVIKLIE-----------SKHELFGPRDTPYEGGV----------WKVRVHLPENYPFKSPSIGFMNKIYH-PNIC 67 (109)
Q Consensus 10 Rl~~d~~~l~~-----------w~~~i~Gp~~tpy~gg~----------~~~~i~f~~~yP~~pP~v~f~t~i~H-Pnv~ 67 (109)
||..|.+.|-. |--.-..++||-|-|.. |-+++++|-.||..+|.+....---. --.|
T Consensus 31 rlkeey~sli~yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpeldgktakmy 110 (167)
T KOG3357|consen 31 RLKEEYQSLIAYVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPELDGKTAKMY 110 (167)
T ss_pred HHHHHHHHHHHHHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccccccCchhhhhh
Confidence 77777776522 33334567788777653 44556679999999999866531111 1335
Q ss_pred CCCCeEEccCC-CCCCC---CCCCHHHHH
Q psy11961 68 EGSGTVCLNVI-NQAWT---PLYDLSNIF 92 (109)
Q Consensus 68 ~~~G~icl~~l-~~~W~---p~~~i~~il 92 (109)
..|+||+.-. ..-|. |.++|...+
T Consensus 111 -rggkiclt~hfkplwarn~pkfgiaha~ 138 (167)
T KOG3357|consen 111 -RGGKICLTDHFKPLWARNVPKFGIAHAM 138 (167)
T ss_pred -cCceEeeccccchhhhhcCcchhHHHHH
Confidence 5899999543 44463 556666553
No 35
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=85.52 E-value=2.3 Score=32.93 Aligned_cols=59 Identities=24% Similarity=0.393 Sum_probs=41.6
Q ss_pred CCCCCEEEEEEEcCCCCCCCCCeeeee-cccccCceeCCCCeEEccCCCCCCCCC--CCHHHHHHHHHH
Q psy11961 32 PYEGGVWKVRVHLPENYPFKSPSIGFM-NKIYHPNICEGSGTVCLNVINQAWTPL--YDLSNIFECFLP 97 (109)
Q Consensus 32 py~gg~~~~~i~f~~~yP~~pP~v~f~-t~i~HPnv~~~~G~icl~~l~~~W~p~--~~i~~il~~i~~ 97 (109)
||.|...+.+|.|...||..||-+.|. ..-|+|... .+ ..| .+|.+. ..+..++..+..
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s----~l--~~L-~~Wd~~dp~~Ll~li~EL~~ 122 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPS----KL--PSL-VNWDPSDPNCLLNLISELRQ 122 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChh----hc--chh-hcCCCCCchHHHHHHHHHHH
Confidence 788888999999999999999999997 334777432 11 111 478876 346666665554
No 36
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=74.07 E-value=5.3 Score=26.95 Aligned_cols=25 Identities=32% Similarity=0.595 Sum_probs=22.9
Q ss_pred CCEEEEEEEcCCCCC-CCCCeeeeec
Q psy11961 35 GGVWKVRVHLPENYP-FKSPSIGFMN 59 (109)
Q Consensus 35 gg~~~~~i~f~~~yP-~~pP~v~f~t 59 (109)
.|.|.|.-.+|-.|| .+||.|+|.-
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 699999999999999 9999998873
No 37
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=73.79 E-value=5.2 Score=28.39 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=23.5
Q ss_pred CCCEEEEEEEcCCCCCCCCCeeeeec
Q psy11961 34 EGGVWKVRVHLPENYPFKSPSIGFMN 59 (109)
Q Consensus 34 ~gg~~~~~i~f~~~yP~~pP~v~f~t 59 (109)
+.|.|.|+-.+|--||.++|.|+|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 46899999999999999999999883
No 38
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=71.62 E-value=9.4 Score=26.59 Aligned_cols=42 Identities=24% Similarity=0.359 Sum_probs=24.6
Q ss_pred ccccc---CceeCCCCeEEccCCCCCCCCC-CCHHHHHHHHHHhhcCCCC
Q psy11961 59 NKIYH---PNICEGSGTVCLNVINQAWTPL-YDLSNIFECFLPQLLTPIR 104 (109)
Q Consensus 59 t~i~H---Pnv~~~~G~icl~~l~~~W~p~-~~i~~il~~i~~ll~~P~~ 104 (109)
|++|| +||+ .+|+||+.... .|. .++.++=.....++.++..
T Consensus 90 T~Ly~aPf~NV~-~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~S~ft 135 (175)
T PF14460_consen 90 TPLYHAPFFNVY-SNGSVCWGNNS---LPKISTLASIEAWEDAFFNSPFT 135 (175)
T ss_pred CeeEeCCccccC-CCCcEeeCCCc---CCCccCHHHHHHHHHHHhCCCcc
Confidence 34554 4999 69999996642 233 2444444444555666543
No 39
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=66.77 E-value=9.5 Score=26.30 Aligned_cols=25 Identities=28% Similarity=0.638 Sum_probs=22.7
Q ss_pred CCEEEEEEEcCCCCC-----CCCCeeeeec
Q psy11961 35 GGVWKVRVHLPENYP-----FKSPSIGFMN 59 (109)
Q Consensus 35 gg~~~~~i~f~~~yP-----~~pP~v~f~t 59 (109)
.|.|.|+-.+|--|| .++|.|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 689999999999999 8999998883
No 40
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=64.53 E-value=6.2 Score=29.93 Aligned_cols=81 Identities=19% Similarity=0.259 Sum_probs=47.5
Q ss_pred ccccccchHhHHHHhhCCceee--CCCCCCC------CCCEEEEEEEcCCCCCCCCCeeeeecccccCceeCCCCeEEcc
Q psy11961 5 SAGTRRMNIDVIKLIESKHELF--GPRDTPY------EGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLN 76 (109)
Q Consensus 5 ~~~~~Rl~~d~~~l~~w~~~i~--Gp~~tpy------~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~~~~G~icl~ 76 (109)
+..-++|.+|+..+-.-+.+-. +..-+-- +.-...++|.++.+||.++|.+...-++ ..
T Consensus 98 ~~~ys~ll~EIe~IGW~kl~~i~~d~~ls~i~l~~~D~~R~H~l~l~l~~~yp~~~p~~~~~~P~-~~------------ 164 (291)
T PF09765_consen 98 PQYYSNLLKEIEAIGWDKLVQIQFDDDLSTIKLKIFDSSRQHYLELKLPSNYPFEPPSCSLDLPI-PF------------ 164 (291)
T ss_dssp -GGC-CHHHHHHHHHCGCCEEEEE-CCCSEEEEEEETTCEEEEEEEETTTTTTTSEEEECS-TTS--H------------
T ss_pred cHHHHHHHHHHHHhccccceEEecCCCccEEEEEEEcCCceEEEEEEECCCCCCCCceeeCCCCc-ch------------
Confidence 3455678888887753344422 2221110 1244668899999999999976332211 11
Q ss_pred CCCCCCCC-CCCHHHHHHHHHHhhc
Q psy11961 77 VINQAWTP-LYDLSNIFECFLPQLL 100 (109)
Q Consensus 77 ~l~~~W~p-~~~i~~il~~i~~ll~ 100 (109)
...|.+ ..++.+++...+..+.
T Consensus 165 --~~~w~~~~ssL~~v~~qF~~~le 187 (291)
T PF09765_consen 165 --SLSWSPSQSSLKDVVQQFQEALE 187 (291)
T ss_dssp --HHHHHCHT-SHHHHHHHHHHHHH
T ss_pred --hhhhcccccCHHHHHHHHHHHHH
Confidence 135888 6789999988887764
No 41
>PF06675 DUF1177: Protein of unknown function (DUF1177); InterPro: IPR009561 This family consists of several hypothetical archaeal and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=58.86 E-value=12 Score=28.05 Aligned_cols=51 Identities=24% Similarity=0.416 Sum_probs=39.1
Q ss_pred cccchHhHHHHhhCCce-------eeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeee
Q psy11961 8 TRRMNIDVIKLIESKHE-------LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFM 58 (109)
Q Consensus 8 ~~Rl~~d~~~l~~w~~~-------i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~ 58 (109)
+.|+..|+.++++|..- +.--+=|||.+|.||+.=.+.+--=-+.|.|-..
T Consensus 153 ILrvsedLl~im~~~TG~~~~~~PlT~qDITPygNgvyHiNSIlQP~~aT~aPVVGvA 210 (276)
T PF06675_consen 153 ILRVSEDLLDIMERVTGKLPVTFPLTTQDITPYGNGVYHINSILQPAVATDAPVVGVA 210 (276)
T ss_pred EEEcCHHHHHHHHhhcCCCceEEeccccccccCCCCceeeeccccchhhcCCCeeEEE
Confidence 45899999999987543 5555789999999999988876655667776443
No 42
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=56.68 E-value=17 Score=25.95 Aligned_cols=25 Identities=24% Similarity=0.406 Sum_probs=21.8
Q ss_pred CCCEEEEEEEcCCCCCC-----CCCeeeee
Q psy11961 34 EGGVWKVRVHLPENYPF-----KSPSIGFM 58 (109)
Q Consensus 34 ~gg~~~~~i~f~~~yP~-----~pP~v~f~ 58 (109)
+.|.|.|+-..|-.||. +||.|.|.
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 35889999999999998 88988877
No 43
>KOG4018|consensus
Probab=56.16 E-value=12 Score=27.37 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=18.7
Q ss_pred EEEEEEEcCCCCCCCCCeeee
Q psy11961 37 VWKVRVHLPENYPFKSPSIGF 57 (109)
Q Consensus 37 ~~~~~i~f~~~yP~~pP~v~f 57 (109)
.+.+.+.++.+||..+|-+.+
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~~ 70 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIEA 70 (215)
T ss_pred cEEEEEEccCCCCCCCcceec
Confidence 788999999999999999933
No 44
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=54.79 E-value=19 Score=25.48 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=20.8
Q ss_pred CCEEEEEEEcCCCCCC-----CCCeeeee
Q psy11961 35 GGVWKVRVHLPENYPF-----KSPSIGFM 58 (109)
Q Consensus 35 gg~~~~~i~f~~~yP~-----~pP~v~f~ 58 (109)
.|.|.|+-.+|--||. +||.|+|.
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 5889999999999995 88888776
No 45
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=54.55 E-value=29 Score=25.54 Aligned_cols=34 Identities=21% Similarity=0.468 Sum_probs=20.6
Q ss_pred ccccC---ceeCCCCeEEccCCCCCCCCC-CCHHHHHHHHHHh
Q psy11961 60 KIYHP---NICEGSGTVCLNVINQAWTPL-YDLSNIFECFLPQ 98 (109)
Q Consensus 60 ~i~HP---nv~~~~G~icl~~l~~~W~p~-~~i~~il~~i~~l 98 (109)
++||. ||+ .+|+||+.... .|. .++.+ +....+.
T Consensus 132 ~L~~aPffNV~-~~G~VC~G~~~---~P~~~~~~~-i~~we~~ 169 (228)
T TIGR03737 132 KLYQAPLFNVW-SNGEICAGNAR---LPDRPTVAN-ISAWEDA 169 (228)
T ss_pred eeccCCcCccC-CCCeEeeCCCc---CCCCcCHHH-HHHHHHH
Confidence 45554 998 59999996653 444 35555 4433333
No 46
>KOG0177|consensus
Probab=52.39 E-value=5.9 Score=28.42 Aligned_cols=60 Identities=12% Similarity=0.315 Sum_probs=38.4
Q ss_pred EEEEEcCCCCCCCCCeeeeecc------cccC-ceeCCCCeEEccCCCCCCCCCCCHHHHHHHHHHhhc
Q psy11961 39 KVRVHLPENYPFKSPSIGFMNK------IYHP-NICEGSGTVCLNVINQAWTPLYDLSNIFECFLPQLL 100 (109)
Q Consensus 39 ~~~i~f~~~yP~~pP~v~f~t~------i~HP-nv~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~ 100 (109)
++.+.+---=|.+-|...+... +-+- +-+ .+..|.+++...|+|.+|+++.+.-++.++.
T Consensus 99 qV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy--~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~ 165 (200)
T KOG0177|consen 99 QVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGY--GSYFCLSILDRYYKPDMTIEEALDLMKKCVL 165 (200)
T ss_pred eEEEEEeccCCCCCCceeeehhhhhcccCCcccccc--hhhhhHHHHHhhhCCCCCHHHHHHHHHHHHH
Confidence 3444443222455577666632 1111 222 6789999999999999999999877776643
No 47
>KOG0662|consensus
Probab=46.71 E-value=17 Score=26.54 Aligned_cols=55 Identities=22% Similarity=0.367 Sum_probs=45.3
Q ss_pred CCCCeeeeecccccCcee-CCCCeEEccCCCCCC--CCCCCHHHHHHHHHHhhcCCCC
Q psy11961 50 FKSPSIGFMNKIYHPNIC-EGSGTVCLNVINQAW--TPLYDLSNIFECFLPQLLTPIR 104 (109)
Q Consensus 50 ~~pP~v~f~t~i~HPnv~-~~~G~icl~~l~~~W--~p~~~i~~il~~i~~ll~~P~~ 104 (109)
.+||.|-|-.+.|...|+ ++-|-|...+-+.+| -|+.++.+-|..|..++-+|.+
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~e 224 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTE 224 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCcc
Confidence 579999999999999998 667766666666677 4888999999999999998853
No 48
>KOG0309|consensus
Probab=46.68 E-value=22 Score=30.95 Aligned_cols=22 Identities=41% Similarity=0.782 Sum_probs=19.0
Q ss_pred EEEEEEcCCCCCCC-CCeeeeec
Q psy11961 38 WKVRVHLPENYPFK-SPSIGFMN 59 (109)
Q Consensus 38 ~~~~i~f~~~yP~~-pP~v~f~t 59 (109)
.++.|.||.+||.+ +|.+.|..
T Consensus 468 lrm~V~FP~nYPn~a~P~Fq~e~ 490 (1081)
T KOG0309|consen 468 LRMLVKFPANYPNNAAPSFQFEN 490 (1081)
T ss_pred EEEEEeccccCCCCCCCceEEec
Confidence 57889999999996 79999884
No 49
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=45.55 E-value=31 Score=26.22 Aligned_cols=25 Identities=20% Similarity=0.518 Sum_probs=21.8
Q ss_pred CCCEEEEEEEcCCCCC------------------CCCCeeeee
Q psy11961 34 EGGVWKVRVHLPENYP------------------FKSPSIGFM 58 (109)
Q Consensus 34 ~gg~~~~~i~f~~~yP------------------~~pP~v~f~ 58 (109)
+.|.|.|+-..|.-|| .+||.|+|.
T Consensus 179 ~~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 221 (285)
T TIGR02439 179 AEGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFF 221 (285)
T ss_pred CCCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEE
Confidence 3789999999999997 688999887
No 50
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=43.34 E-value=38 Score=26.36 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=19.6
Q ss_pred EEEEEEEcCCCCCCCCCeeeeec
Q psy11961 37 VWKVRVHLPENYPFKSPSIGFMN 59 (109)
Q Consensus 37 ~~~~~i~f~~~yP~~pP~v~f~t 59 (109)
.|-+.|.+|..||...|.++|.+
T Consensus 307 ~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 307 TFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred EEEEEEeccCCCCCcCCeEEEEe
Confidence 45567788999999999999986
No 51
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=42.21 E-value=37 Score=25.67 Aligned_cols=25 Identities=36% Similarity=0.712 Sum_probs=21.8
Q ss_pred CCCEEEEEEEcCCCCC------------------CCCCeeeee
Q psy11961 34 EGGVWKVRVHLPENYP------------------FKSPSIGFM 58 (109)
Q Consensus 34 ~gg~~~~~i~f~~~yP------------------~~pP~v~f~ 58 (109)
+.|.|.|+-..|.-|| .+||.|.|.
T Consensus 171 ~~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 213 (277)
T cd03461 171 EDGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFM 213 (277)
T ss_pred CCCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEE
Confidence 3789999999999998 589999887
No 52
>KOG4445|consensus
Probab=40.11 E-value=34 Score=26.55 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=21.3
Q ss_pred CEEEEEEEcCCCCCCCCCeeeeecc
Q psy11961 36 GVWKVRVHLPENYPFKSPSIGFMNK 60 (109)
Q Consensus 36 g~~~~~i~f~~~yP~~pP~v~f~t~ 60 (109)
-.+.+.+..+++||...|+|+...+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 3567888899999999999998864
No 53
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=39.60 E-value=43 Score=25.39 Aligned_cols=25 Identities=24% Similarity=0.555 Sum_probs=21.5
Q ss_pred CCCEEEEEEEcCCCCC------------------CCCCeeeee
Q psy11961 34 EGGVWKVRVHLPENYP------------------FKSPSIGFM 58 (109)
Q Consensus 34 ~gg~~~~~i~f~~~yP------------------~~pP~v~f~ 58 (109)
+.|.|.|+-..|.-|| .+||.|.|.
T Consensus 175 ~~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 217 (282)
T cd03460 175 ADGRYRFRSIMPSGYGVPPGGPTQQLLNALGRHGNRPAHIHFF 217 (282)
T ss_pred CCCCEEEEEECCCCCcCCCCCcHHHHHHhhcCCCCCCCeEEEE
Confidence 3799999999999996 678888887
No 54
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=39.07 E-value=45 Score=25.29 Aligned_cols=25 Identities=12% Similarity=0.460 Sum_probs=21.1
Q ss_pred CCCEEEEEEEcCCCCC------------------CCCCeeeee
Q psy11961 34 EGGVWKVRVHLPENYP------------------FKSPSIGFM 58 (109)
Q Consensus 34 ~gg~~~~~i~f~~~yP------------------~~pP~v~f~ 58 (109)
+.|.|.|.-..|..|| .+||.|.|.
T Consensus 183 adG~y~F~TI~Pg~YpiP~dGp~G~lL~~~Grh~~RpaHIHf~ 225 (281)
T TIGR02438 183 DEGRFEITTMQPAPYQIPTDGPTGKFIAAAGGHPWRPAHLHLK 225 (281)
T ss_pred CCCCEEEEEECCCCcCCCCCCchHHHHHhcccCCCCCCEEEEE
Confidence 3789999999998887 588998887
No 55
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=38.92 E-value=46 Score=24.27 Aligned_cols=24 Identities=29% Similarity=0.692 Sum_probs=21.1
Q ss_pred CCEEEEEEEcCCCCCC-------CCCeeeee
Q psy11961 35 GGVWKVRVHLPENYPF-------KSPSIGFM 58 (109)
Q Consensus 35 gg~~~~~i~f~~~yP~-------~pP~v~f~ 58 (109)
.|.|.|.-..|--||. +||.|.|.
T Consensus 122 ~G~y~F~TI~Pg~Yp~p~~r~~~RppHIH~~ 152 (220)
T cd03464 122 DGYYRFRTIKPGAYPWGNHPNAWRPAHIHFS 152 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 6999999999999964 89999886
No 56
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=37.82 E-value=49 Score=24.12 Aligned_cols=25 Identities=28% Similarity=0.659 Sum_probs=21.6
Q ss_pred CCCEEEEEEEcCCCCCC-------CCCeeeee
Q psy11961 34 EGGVWKVRVHLPENYPF-------KSPSIGFM 58 (109)
Q Consensus 34 ~gg~~~~~i~f~~~yP~-------~pP~v~f~ 58 (109)
+.|.|.|.-..|--||. +||.|.|.
T Consensus 116 ~~G~y~F~TI~PG~Y~~p~~~~~~R~pHIH~~ 147 (220)
T TIGR02422 116 SDGYYRFRTIKPGPYPWGNHHNAWRPAHIHFS 147 (220)
T ss_pred CCccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 37999999999999975 89999886
No 57
>smart00340 HALZ homeobox associated leucin zipper.
Probab=36.45 E-value=18 Score=19.65 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=12.5
Q ss_pred ccccchHhHHHHhhCC
Q psy11961 7 GTRRMNIDVIKLIESK 22 (109)
Q Consensus 7 ~~~Rl~~d~~~l~~w~ 22 (109)
-+|||++|+.+|..-+
T Consensus 20 eNrRL~ke~~eLralk 35 (44)
T smart00340 20 ENRRLQKEVQELRALK 35 (44)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 4689999999986544
No 58
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=36.07 E-value=56 Score=24.28 Aligned_cols=25 Identities=20% Similarity=0.616 Sum_probs=21.1
Q ss_pred CCCEEEEEEEcCCCCC------------------CCCCeeeee
Q psy11961 34 EGGVWKVRVHLPENYP------------------FKSPSIGFM 58 (109)
Q Consensus 34 ~gg~~~~~i~f~~~yP------------------~~pP~v~f~ 58 (109)
+.|.|.|+-..|.-|| .+||.|.|.
T Consensus 149 ~~G~y~F~Ti~P~~YpiP~dgp~g~lL~~~grh~~RpaHIH~~ 191 (246)
T TIGR02465 149 ADGSYEVRTTMPVPYQIPDAGPTGALLETMGRHSWRPAHVHYK 191 (246)
T ss_pred CCCCEEEEEECCCCCCCCCCCchHHHHHhcccCCCCCCeEEEE
Confidence 4789999999999996 478888887
No 59
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=32.93 E-value=69 Score=23.20 Aligned_cols=45 Identities=20% Similarity=0.315 Sum_probs=29.1
Q ss_pred CCceeeCCCCCCCCCCEEEEEEEcCCCC-------------------C---CCCCeeeeec--ccccCcee
Q psy11961 21 SKHELFGPRDTPYEGGVWKVRVHLPENY-------------------P---FKSPSIGFMN--KIYHPNIC 67 (109)
Q Consensus 21 w~~~i~Gp~~tpy~gg~~~~~i~f~~~y-------------------P---~~pP~v~f~t--~i~HPnv~ 67 (109)
|........+.-| || |.+.+.|.++= - ..-|.+.|.| +++|-..+
T Consensus 32 W~~~yyp~~~~~~-GG-y~f~~kF~~~~~Vtm~sd~~~~~~~~tS~Y~~~~~~gp~LsFdTyN~~iH~~s~ 100 (235)
T PF14135_consen 32 WKLEYYPKTDQSY-GG-YTFLMKFDDDGKVTMASDFDSASTPSTSSYRLKQDQGPVLSFDTYNEYIHYFSD 100 (235)
T ss_pred eEEEEECCCCccC-Cc-EEEEEEECCCCeEEEEEccCCCCceeeEEEEEecCCceEEEEEeCCceEEEccC
Confidence 8888885555556 44 88888876543 2 2347778875 36776665
No 60
>KOG3696|consensus
Probab=32.66 E-value=36 Score=26.35 Aligned_cols=36 Identities=17% Similarity=0.308 Sum_probs=25.4
Q ss_pred CCCCCE-EEEEEEc-----CCCCCCCCCeeeeecccccCcee
Q psy11961 32 PYEGGV-WKVRVHL-----PENYPFKSPSIGFMNKIYHPNIC 67 (109)
Q Consensus 32 py~gg~-~~~~i~f-----~~~yP~~pP~v~f~t~i~HPnv~ 67 (109)
-|+.|. .-++..| -++=+...|.|.|.-.+|||||-
T Consensus 283 ~w~~g~~ll~ddsf~ha~~~dgs~eds~rvV~~V~lwhpevq 324 (334)
T KOG3696|consen 283 CWAEGKCLLYDDSFLHALQHDGSSEDSPRVVFTVDLWHPEVQ 324 (334)
T ss_pred cccccceeEeechhhcccccCCCcccCceEEEEEeccCcccc
Confidence 354444 4445554 24556678999999999999997
No 61
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=29.94 E-value=1.2e+02 Score=18.90 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=21.5
Q ss_pred CCCCEEEEEEEcCCCCCCCCCeeeeecc
Q psy11961 33 YEGGVWKVRVHLPENYPFKSPSIGFMNK 60 (109)
Q Consensus 33 y~gg~~~~~i~f~~~yP~~pP~v~f~t~ 60 (109)
-||..+.|...-|..|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 46888888888899999 499988854
No 62
>cd07353 harmonin_N N-terminal protein-binding module of harmonin. Harmonin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein, which organizes the Usher protein network of the inner ear and the retina. Harmonin contains a single copy of this domain, which is found at the N-terminus of all three harmonin isoform classes (a, b and c), and which preceeds the first PDZ protein-binding domain, PDZ1. This harmonin_N domain binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network.
Probab=29.59 E-value=65 Score=19.50 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=23.5
Q ss_pred CCCCCCCHHHHHHHHHHhhcCCCCCCC
Q psy11961 81 AWTPLYDLSNIFECFLPQLLTPIRTPL 107 (109)
Q Consensus 81 ~W~p~~~i~~il~~i~~ll~~P~~~~l 107 (109)
.+-.+.++..++..|+..+.+|.+-||
T Consensus 31 ~YHqSm~lp~li~Dlk~VIN~P~R~pL 57 (79)
T cd07353 31 MYHQSMNLPVLVGDLKLVINEPSRLPL 57 (79)
T ss_pred HHHhccCHHHHHHHHHHHhCCccccch
Confidence 456678999999999999999998877
No 63
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=29.44 E-value=82 Score=23.56 Aligned_cols=25 Identities=36% Similarity=0.752 Sum_probs=20.8
Q ss_pred CCCEEEEEEEcCCCCC------------------CCCCeeeee
Q psy11961 34 EGGVWKVRVHLPENYP------------------FKSPSIGFM 58 (109)
Q Consensus 34 ~gg~~~~~i~f~~~yP------------------~~pP~v~f~ 58 (109)
+.|.|.|+-..|.-|| .+||.|.|.
T Consensus 155 ~~G~y~f~Ti~P~~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 197 (256)
T cd03458 155 EDGRYRFRTIRPVPYPIPPDGPTGELLEALGRHPWRPAHIHFM 197 (256)
T ss_pred CCCCEEEEEECCCCccCCCCCcHHHHHHhcccCCCCCCeEEEE
Confidence 3689999999998885 578988887
No 64
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=28.59 E-value=58 Score=18.68 Aligned_cols=17 Identities=24% Similarity=0.624 Sum_probs=10.7
Q ss_pred CCCCCCCHHHHHHHHHH
Q psy11961 81 AWTPLYDLSNIFECFLP 97 (109)
Q Consensus 81 ~W~p~~~i~~il~~i~~ 97 (109)
+|.|.++|.+++.....
T Consensus 37 gW~p~~~L~~~i~~~w~ 53 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDAWN 53 (62)
T ss_dssp ----SSSHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHH
Confidence 79999999999976554
No 65
>KOG1047|consensus
Probab=27.99 E-value=62 Score=27.12 Aligned_cols=28 Identities=32% Similarity=0.809 Sum_probs=23.2
Q ss_pred CCCCCEEEEEEEcCCCCCC---CCCeeeeecc
Q psy11961 32 PYEGGVWKVRVHLPENYPF---KSPSIGFMNK 60 (109)
Q Consensus 32 py~gg~~~~~i~f~~~yP~---~pP~v~f~t~ 60 (109)
||.=|+|-+. .+|+.||+ +-|.+.|.|+
T Consensus 249 pY~WgryDll-vlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 249 PYVWGRYDLL-VLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CcccccceEE-EecCCCCcccccCcceeeecc
Confidence 7888888864 57899999 4699999985
No 66
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=26.68 E-value=97 Score=23.04 Aligned_cols=25 Identities=28% Similarity=0.663 Sum_probs=20.7
Q ss_pred CCCEEEEEEEcCCCCC------------------CCCCeeeee
Q psy11961 34 EGGVWKVRVHLPENYP------------------FKSPSIGFM 58 (109)
Q Consensus 34 ~gg~~~~~i~f~~~yP------------------~~pP~v~f~ 58 (109)
+.|.|.|+-..|.-|| .+||.|.|.
T Consensus 150 ~~G~y~F~Ti~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 192 (247)
T cd03462 150 EDGRYEVRTTVPVPYQIPNDGPTGALLEAMGGHSWRPAHVHFK 192 (247)
T ss_pred CCCCEEEEEECCCCcCCCCCCcHHHHHHhcccCCCCCCeEEEE
Confidence 4788999999998885 578888887
No 67
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=26.41 E-value=1.3e+02 Score=18.37 Aligned_cols=40 Identities=15% Similarity=0.055 Sum_probs=27.3
Q ss_pred hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecc
Q psy11961 19 IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNK 60 (109)
Q Consensus 19 ~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~ 60 (109)
.+|.+.+.|+.+.--..-+=++.+.+.+.|+. |...+..+
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~p 41 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKP 41 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSST
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCC
Confidence 36888899888876566777888888888876 66555554
No 68
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=26.25 E-value=1.1e+02 Score=23.11 Aligned_cols=30 Identities=20% Similarity=0.544 Sum_probs=26.6
Q ss_pred CCCCCCCEEEEEEEcCCCCCCCC--Ceeeeec
Q psy11961 30 DTPYEGGVWKVRVHLPENYPFKS--PSIGFMN 59 (109)
Q Consensus 30 ~tpy~gg~~~~~i~f~~~yP~~p--P~v~f~t 59 (109)
.+.+.|-.|++-+..|.+||-.- |.|.|..
T Consensus 15 ~s~~~~~~yri~i~~P~~~~~~~~YpVlY~lD 46 (264)
T COG2819 15 KSANTGRKYRIFIATPKNYPKPGGYPVLYMLD 46 (264)
T ss_pred eecCCCcEEEEEecCCCCCCCCCCCcEEEEec
Confidence 46788999999999999999988 9998884
No 69
>PRK11700 hypothetical protein; Provisional
Probab=26.17 E-value=2.5e+02 Score=20.10 Aligned_cols=64 Identities=19% Similarity=0.381 Sum_probs=41.9
Q ss_pred eeCCCCCCC-CCCEEEEEEEcCC--------------CCCCCCCeeeee--c------ccccCceeCCCCeEEccCCCCC
Q psy11961 25 LFGPRDTPY-EGGVWKVRVHLPE--------------NYPFKSPSIGFM--N------KIYHPNICEGSGTVCLNVINQA 81 (109)
Q Consensus 25 i~Gp~~tpy-~gg~~~~~i~f~~--------------~yP~~pP~v~f~--t------~i~HPnv~~~~G~icl~~l~~~ 81 (109)
+.=|.+.-| ..|+=++++++|- +.+..++-|++. + ..-+|-|.-.+|.+|+.+-
T Consensus 98 LP~P~~k~Yp~eGWEHIElVlp~~~~t~~~~~~all~~~~l~~~gikvK~SsPkge~ERL~NPTlAv~~~~vcIK~H--- 174 (187)
T PRK11700 98 LPYPGEKRYPHEGWEHIELVLPGDPETLDARALALLSDEGLSLPGIKVKTSSPKGEGERLPNPTLAVTDGGICIKFH--- 174 (187)
T ss_pred eCCCCCCCCCCCCceEEEEEecCCcchHHHHHHHhccccccccCCcEEEecCCCccCccCCCCcEEEeeCCEEEEEc---
Confidence 444545555 5788899999873 344445555544 3 4678888767899999653
Q ss_pred CCCCCCHHHHHHH
Q psy11961 82 WTPLYDLSNIFEC 94 (109)
Q Consensus 82 W~p~~~i~~il~~ 94 (109)
-++|.+|+.+
T Consensus 175 ---P~slk~IV~S 184 (187)
T PRK11700 175 ---PHSIKEIVAS 184 (187)
T ss_pred ---CccHHHHHHh
Confidence 3577777654
No 70
>PF06468 Spond_N: Spondin_N; InterPro: IPR009465 This conserved region is found in the N-terminal half of several Spondin proteins []. Spondins are involved in patterning axonal growth trajectory through either inhibiting or promoting adhesion of embryonic nerve cells [].; PDB: 3D34_A 3Q13_A.
Probab=25.18 E-value=80 Score=22.51 Aligned_cols=26 Identities=27% Similarity=0.567 Sum_probs=16.7
Q ss_pred CEEEEEEE-------cCCCCCCCCCeeeeeccc
Q psy11961 36 GVWKVRVH-------LPENYPFKSPSIGFMNKI 61 (109)
Q Consensus 36 g~~~~~i~-------f~~~yP~~pP~v~f~t~i 61 (109)
++|++.+. +|++||...|.-+|..-+
T Consensus 2 A~Y~~~f~g~Ws~~~hpk~yP~~~~~~~fSpli 34 (196)
T PF06468_consen 2 ATYEVTFEGIWSRNTHPKDYPSNRPPAHFSPLI 34 (196)
T ss_dssp EEEEEEEEEE-STTTS-TT--CTSSCSEEEEEE
T ss_pred ceEEEEEEEEECCccCcccccccccccccchhh
Confidence 35777766 899999988888887543
No 71
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=24.57 E-value=50 Score=23.24 Aligned_cols=25 Identities=28% Similarity=0.610 Sum_probs=16.6
Q ss_pred CCCEEEEEEEcCCCCC------------------CCCCeeeee
Q psy11961 34 EGGVWKVRVHLPENYP------------------FKSPSIGFM 58 (109)
Q Consensus 34 ~gg~~~~~i~f~~~yP------------------~~pP~v~f~ 58 (109)
+.|.|.|+-..|.-|| .+||.|.|.
T Consensus 82 ~~G~y~f~Ti~Pg~Y~~~~dG~~g~ll~~~g~~~~Rp~HIH~~ 124 (183)
T PF00775_consen 82 ADGRYSFRTIKPGPYPIPDDGPVGFLLRALGRHPWRPAHIHFK 124 (183)
T ss_dssp TTSEEEEEEE----EEESTTSHHHHHHHHTTTTEEE-SEEEEE
T ss_pred CCCEEEEEeeCCCCCCCCCccHHHHHHhhhccCCCcCCeEEEE
Confidence 4789999999999888 578888887
No 72
>PF11745 DUF3304: Protein of unknown function (DUF3304); InterPro: IPR021733 This is a family of bacterial proteins of unknown function.
Probab=24.13 E-value=38 Score=21.98 Aligned_cols=21 Identities=24% Similarity=0.640 Sum_probs=16.6
Q ss_pred CCCeEEccCCCCCCCCCCCHH
Q psy11961 69 GSGTVCLNVINQAWTPLYDLS 89 (109)
Q Consensus 69 ~~G~icl~~l~~~W~p~~~i~ 89 (109)
..|.+|.-.+...|+|.+++.
T Consensus 49 GGg~~CC~~~p~~W~pg~tv~ 69 (118)
T PF11745_consen 49 GGGFTCCVSLPRKWRPGLTVK 69 (118)
T ss_pred CCceEEEEEcCCCCCCCCEEE
Confidence 456679888899999998753
No 73
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=21.33 E-value=68 Score=20.74 Aligned_cols=34 Identities=26% Similarity=0.315 Sum_probs=24.6
Q ss_pred ccccccchHhHHHHhhCC--ceeeCCCCCCCCCCEEEEE
Q psy11961 5 SAGTRRMNIDVIKLIESK--HELFGPRDTPYEGGVWKVR 41 (109)
Q Consensus 5 ~~~~~Rl~~d~~~l~~w~--~~i~Gp~~tpy~gg~~~~~ 41 (109)
|++.+|+.+.+..+.+-. +.|.|++|| |..+-.+
T Consensus 4 S~~~~~l~~~l~~~a~~~~pvli~GE~Gt---GK~~~A~ 39 (138)
T PF14532_consen 4 SPAMRRLRRQLERLAKSSSPVLITGEPGT---GKSLLAR 39 (138)
T ss_dssp CHHHHHHHHHHHHHHCSSS-EEEECCTTS---SHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEEcCCCC---CHHHHHH
Confidence 677889999999886543 459999999 5444333
No 74
>KOG3203|consensus
Probab=20.77 E-value=48 Score=23.10 Aligned_cols=15 Identities=33% Similarity=0.649 Sum_probs=11.6
Q ss_pred cccccCceeCCCCeEEc
Q psy11961 59 NKIYHPNICEGSGTVCL 75 (109)
Q Consensus 59 t~i~HPnv~~~~G~icl 75 (109)
.++|||+.| .|.+|.
T Consensus 49 KPiYhP~~D--cGD~VV 63 (165)
T KOG3203|consen 49 KPIYHPSTD--CGDHVV 63 (165)
T ss_pred CCccCCccC--CCCEEE
Confidence 378999998 676665
Done!