Query psy11961
Match_columns 109
No_of_seqs 106 out of 1105
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 23:24:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11961.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11961hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fo3_A Ubiquitin-conjugating e 100.0 3.3E-38 1.1E-42 209.6 9.8 102 5-107 5-124 (125)
2 1ayz_A UBC2, ubiquitin-conjuga 100.0 5.8E-38 2E-42 217.9 10.1 104 1-107 1-122 (169)
3 2aak_A UBC1, ubiquitin conjuga 100.0 1.4E-37 4.9E-42 212.4 10.2 104 1-107 1-122 (152)
4 2h2y_A Ubiquitin-conjugating e 100.0 1.7E-37 5.8E-42 208.9 10.0 100 5-105 19-136 (136)
5 2ucz_A UBC7, ubiquitin conjuga 100.0 1.3E-37 4.3E-42 215.2 8.7 104 1-107 1-136 (165)
6 4gpr_A Ubiquitin-conjugating e 100.0 1.4E-37 4.6E-42 212.4 8.4 103 4-107 2-122 (151)
7 1jat_A Ubiquitin-conjugating e 100.0 3.2E-37 1.1E-41 211.3 10.1 105 3-108 2-124 (155)
8 2e2c_A Ubiquitin conjugating e 100.0 4.3E-37 1.5E-41 210.9 10.4 102 5-107 8-127 (156)
9 2c2v_B Ubiquitin-conjugating e 100.0 2.5E-37 8.6E-42 211.7 9.0 103 5-108 4-124 (154)
10 2bep_A Ubiquitin-conjugating e 100.0 5.1E-37 1.7E-41 211.1 10.1 103 5-107 7-130 (159)
11 2r0j_A Ubiquitin carrier prote 100.0 7.4E-37 2.5E-41 208.3 10.3 101 7-108 2-120 (149)
12 1i7k_A Ubiquitin-conjugating e 100.0 6.1E-37 2.1E-41 214.5 9.6 103 5-108 29-149 (179)
13 3h8k_A Ubiquitin-conjugating e 100.0 3.9E-37 1.3E-41 212.5 8.4 102 5-107 2-135 (164)
14 2ayv_A Ubiquitin-conjugating e 100.0 8.6E-37 2.9E-41 211.5 10.0 102 5-107 20-139 (166)
15 3k9o_A Ubiquitin-conjugating e 100.0 1.3E-36 4.5E-41 215.9 10.3 105 1-107 2-127 (201)
16 1z2u_A Ubiquitin-conjugating e 100.0 1.5E-36 5E-41 207.0 10.0 102 5-107 3-122 (150)
17 2z5d_A Ubiquitin-conjugating e 100.0 1.5E-37 5.2E-42 217.5 5.1 107 1-107 20-141 (179)
18 1zdn_A Ubiquitin-conjugating e 100.0 5.3E-37 1.8E-41 210.9 7.5 102 5-107 12-131 (158)
19 2c4o_A Ubiquitin-conjugating e 100.0 1.5E-36 5E-41 210.1 9.8 102 5-107 18-137 (165)
20 2gjd_A Ubiquitin-conjugating e 100.0 6.9E-37 2.3E-41 210.1 8.0 104 1-107 1-129 (157)
21 1yrv_A Ubiquitin-conjugating l 100.0 4.9E-37 1.7E-41 213.3 6.9 105 1-107 20-144 (169)
22 3rz3_A Ubiquitin-conjugating e 100.0 1E-36 3.5E-41 213.9 8.5 105 1-107 3-139 (183)
23 1fxt_A Ubiquitin-conjugating e 100.0 1.2E-36 3.9E-41 207.3 8.2 101 7-107 2-121 (149)
24 1yh2_A HSPC150 protein similar 100.0 2.8E-36 9.6E-41 209.3 9.7 102 5-107 3-126 (169)
25 2awf_A Ubiquitin-conjugating e 100.0 3.8E-36 1.3E-40 209.2 9.9 103 4-107 15-149 (172)
26 2f4z_A Tgtwinscan_2721 - E2 do 100.0 5.9E-36 2E-40 211.6 10.0 103 6-108 32-165 (193)
27 2pwq_A Ubiquitin conjugating e 100.0 1.9E-36 6.5E-41 217.3 7.4 105 4-108 21-143 (216)
28 2onu_A Ubiquitin-conjugating e 100.0 1.6E-36 5.5E-41 207.4 6.7 102 6-107 2-119 (152)
29 2a7l_A Hypothetical ubiquitin- 100.0 8.6E-36 2.9E-40 200.7 9.6 92 8-100 24-136 (136)
30 3bzh_A Ubiquitin-conjugating e 100.0 4.2E-36 1.4E-40 212.5 8.4 102 5-107 47-166 (194)
31 2grr_A Ubiquitin-conjugating e 100.0 9.2E-36 3.2E-40 205.2 9.9 104 1-107 4-132 (161)
32 1y8x_A Ubiquitin-conjugating e 100.0 5.5E-36 1.9E-40 206.3 7.7 101 5-107 5-122 (160)
33 3rcz_B SUMO-conjugating enzyme 100.0 1.8E-35 6.2E-40 204.3 10.0 102 5-107 9-135 (163)
34 3e46_A Ubiquitin-conjugating e 100.0 2.3E-35 7.8E-40 215.9 10.1 103 5-107 56-179 (253)
35 1tte_A Ubiquitin-conjugating e 100.0 2.7E-36 9.4E-41 216.3 5.0 102 6-107 2-122 (215)
36 2y9m_A Ubiquitin-conjugating e 100.0 3.7E-35 1.3E-39 204.2 10.5 103 5-107 5-139 (172)
37 1yf9_A Ubiquitin carrier prote 100.0 3.5E-36 1.2E-40 209.3 4.8 102 6-107 12-128 (171)
38 1jat_B Ubiquitin-conjugating e 100.0 6.9E-36 2.4E-40 201.3 6.1 105 1-107 2-130 (138)
39 2nvu_C NEDD8-conjugating enzym 100.0 1.1E-35 3.8E-40 208.2 7.4 102 4-107 24-142 (180)
40 2a4d_A Ubiquitin-conjugating e 100.0 2.5E-35 8.4E-40 203.2 7.5 103 5-107 24-151 (160)
41 2q0v_A Ubiquitin-conjugating e 100.0 3.6E-35 1.2E-39 201.6 7.1 101 5-107 20-145 (156)
42 1c4z_D UBCH7, ubiquitin conjug 100.0 5.7E-35 2E-39 199.9 8.0 99 7-107 3-121 (154)
43 1wzv_A Ubiquitin-conjugating e 100.0 1E-34 3.6E-39 198.7 8.2 100 6-107 4-123 (155)
44 3fn1_B NEDD8-conjugating enzym 100.0 1.9E-34 6.5E-39 199.5 8.9 102 4-107 12-139 (167)
45 2hlw_A Ubiquitin-conjugating e 100.0 3.7E-35 1.3E-39 204.0 5.3 103 5-107 34-161 (170)
46 3o2u_A NEDD8-conjugating enzym 100.0 1.9E-33 6.6E-38 198.3 7.9 101 5-107 28-151 (190)
47 4ddg_A Ubiquitin-conjugating e 100.0 5.7E-33 1.9E-37 214.0 9.5 102 5-107 2-121 (399)
48 4ds2_A Ubiquitin-conjugating e 100.0 4.9E-33 1.7E-37 192.6 7.9 104 1-107 5-143 (167)
49 3ceg_A Baculoviral IAP repeat- 100.0 2.6E-32 9.1E-37 205.1 8.4 102 5-107 75-213 (323)
50 2f4w_A Ubiquitin-conjugating e 100.0 4.9E-32 1.7E-36 190.7 8.9 97 5-104 13-129 (187)
51 1zuo_A Hypothetical protein LO 100.0 1.9E-32 6.4E-37 192.7 4.1 98 5-103 26-157 (186)
52 2z6o_A UFM1-conjugating enzyme 99.9 3.3E-26 1.1E-30 157.4 3.4 85 8-93 34-144 (172)
53 3r3q_A Suppressor protein STP2 99.8 4.2E-19 1.4E-23 122.2 5.4 79 25-105 67-160 (162)
54 3kpa_A Probable ubiquitin fold 99.7 2.1E-18 7.1E-23 116.7 1.7 84 8-92 36-145 (168)
55 3obq_A Tumor susceptibility ge 99.5 1.7E-14 5.8E-19 97.7 4.7 68 31-101 62-138 (146)
56 3zqs_A E3 ubiquitin-protein li 94.6 0.13 4.4E-06 35.6 6.7 51 35-100 37-87 (186)
57 2ebm_A RWD domain-containing p 93.6 0.064 2.2E-06 34.2 3.5 25 35-59 54-78 (128)
58 2yz0_A Serine/threonine-protei 92.7 0.11 3.7E-06 33.6 3.5 24 36-59 62-85 (138)
59 2day_A Ring finger protein 25; 92.7 0.1 3.6E-06 33.1 3.4 64 36-103 59-126 (128)
60 1ukx_A GCN2, GCN2 EIF2alpha ki 91.7 0.11 3.7E-06 33.4 2.5 63 36-101 63-128 (137)
61 2ebk_A RWD domain-containing p 90.5 0.16 5.4E-06 32.4 2.4 24 36-59 56-79 (128)
62 2dax_A Protein C21ORF6; RWD do 90.2 0.23 7.9E-06 32.6 3.1 24 37-60 74-97 (152)
63 2daw_A RWD domain containing p 89.4 0.37 1.3E-05 31.9 3.6 24 37-60 76-99 (154)
64 2bum_A Protocatechuate 3,4-dio 55.3 11 0.00039 26.1 3.4 25 34-58 109-138 (209)
65 2bum_B Protocatechuate 3,4-dio 38.1 17 0.0006 25.8 2.2 26 34-59 134-166 (241)
66 1tmx_A Hydroxyquinol 1,2-dioxy 36.6 19 0.00065 26.3 2.2 25 34-58 183-225 (293)
67 2azq_A Catechol 1,2-dioxygenas 36.3 19 0.00065 26.6 2.2 25 34-58 183-225 (311)
68 2xsu_A Catechol 1,2 dioxygenas 36.0 20 0.00067 26.5 2.2 25 34-58 187-229 (312)
69 3t63_M 3,4-PCD, protocatechuat 35.9 20 0.00068 25.5 2.2 25 34-58 133-164 (238)
70 3n9t_A PNPC; phospholipid bind 34.6 22 0.00074 26.0 2.2 25 34-58 180-222 (290)
71 2boy_A 3-chlorocatechol 1,2-di 34.2 22 0.00077 25.4 2.2 25 34-58 153-195 (254)
72 3th1_A Chlorocatechol 1,2-diox 34.1 34 0.0012 24.6 3.2 25 34-58 150-192 (260)
73 3t63_A 3,4-PCD, protocatechuat 33.1 26 0.00089 24.1 2.4 23 36-58 102-129 (200)
74 1dmh_A 1,2-CTD, catechol 1,2-d 32.9 23 0.00079 26.1 2.2 25 34-58 186-228 (311)
75 3hhy_A 1,2-CTD, catechol 1,2-d 31.4 24 0.00082 25.7 2.0 25 34-58 182-224 (280)
76 3o5u_A Chlorocatechol 1,2-diox 25.0 47 0.0016 23.8 2.6 25 34-58 155-198 (257)
77 2ccv_A Helix pomatia agglutini 23.5 1.3E+02 0.0043 18.1 4.1 23 36-59 29-51 (101)
No 1
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=3.3e-38 Score=209.60 Aligned_cols=102 Identities=21% Similarity=0.480 Sum_probs=87.1
Q ss_pred ccccccchHhHHHH-----------------hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeeccc-ccCce
Q psy11961 5 SAGTRRMNIDVIKL-----------------IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKI-YHPNI 66 (109)
Q Consensus 5 ~~~~~Rl~~d~~~l-----------------~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i-~HPnv 66 (109)
+++.+||++|+++| .+|++.|.||++||||||.|+++|.||++||++||+|+|.|++ +||||
T Consensus 5 ~~a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv 84 (125)
T 2fo3_A 5 GNANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHV 84 (125)
T ss_dssp ----CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTB
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCcC
Confidence 35789999999965 5588889999999999999999999999999999999999996 99999
Q ss_pred eCCCCeEEccCCCCCCCCCCCHHHHHHHHHHhhcCCCCCCC
Q psy11961 67 CEGSGTVCLNVINQAWTPLYDLSNIFECFLPQLLTPIRTPL 107 (109)
Q Consensus 67 ~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~P~~~~l 107 (109)
+ .+|+||+++|.++|+|+++|++||.+|+++|.+|+++.|
T Consensus 85 ~-~~G~iCl~iL~~~W~P~~~i~~vl~si~~ll~~p~~~~~ 124 (125)
T 2fo3_A 85 Y-SNGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEKKL 124 (125)
T ss_dssp C-TTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHC-------
T ss_pred C-CCCEEEchhcCCCCCCCCcHHHHHHHHHHHHhCcccccC
Confidence 9 699999999999999999999999999999999987654
No 2
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=5.8e-38 Score=217.88 Aligned_cols=104 Identities=32% Similarity=0.765 Sum_probs=96.1
Q ss_pred CCCCccccccchHhHHHH-----------------hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeeccccc
Q psy11961 1 MSSPSAGTRRMNIDVIKL-----------------IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYH 63 (109)
Q Consensus 1 ms~~~~~~~Rl~~d~~~l-----------------~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~H 63 (109)
|| +++.+||++|+++| ++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus 1 Ms--~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~H 78 (169)
T 1ayz_A 1 MS--TPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFH 78 (169)
T ss_dssp -C--CHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred CC--hHHHHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCcc
Confidence 77 67899999999976 458888999999999999999999999999999999999999999
Q ss_pred CceeCCCCeEEccCCCCCCCCCCCHHHHHHHHHHhhcCCC-CCCC
Q psy11961 64 PNICEGSGTVCLNVINQAWTPLYDLSNIFECFLPQLLTPI-RTPL 107 (109)
Q Consensus 64 Pnv~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~P~-~~~l 107 (109)
|||+ .+|.||+++|.+.|+|+++|.+||.+|+++|.+|+ ++||
T Consensus 79 PNI~-~~G~ICl~iL~~~WsP~~~i~~vL~si~~ll~~Pn~~~P~ 122 (169)
T 1ayz_A 79 PNVY-ANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPA 122 (169)
T ss_dssp TTBC-TTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCS
T ss_pred CCCC-CCCeEeehhhccCCCCcCcHHHHHHHHHHHHhCCCCCcHH
Confidence 9999 59999999999999999999999999999999995 5555
No 3
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=1.4e-37 Score=212.38 Aligned_cols=104 Identities=34% Similarity=0.839 Sum_probs=96.7
Q ss_pred CCCCccccccchHhHHHH-----------------hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeeccccc
Q psy11961 1 MSSPSAGTRRMNIDVIKL-----------------IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYH 63 (109)
Q Consensus 1 ms~~~~~~~Rl~~d~~~l-----------------~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~H 63 (109)
|| +++.+||++|+++| ++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus 1 Ms--~~a~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 78 (152)
T 2aak_A 1 MS--TPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFH 78 (152)
T ss_dssp CC--CHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred CC--hHHHHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCccc
Confidence 77 67889999999976 448888999999999999999999999999999999999999999
Q ss_pred CceeCCCCeEEccCCCCCCCCCCCHHHHHHHHHHhhcCCC-CCCC
Q psy11961 64 PNICEGSGTVCLNVINQAWTPLYDLSNIFECFLPQLLTPI-RTPL 107 (109)
Q Consensus 64 Pnv~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~P~-~~~l 107 (109)
|||+ .+|.||+++|.++|+|+++|.+||.+|+++|.+|+ ++||
T Consensus 79 Pnv~-~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~ 122 (152)
T 2aak_A 79 PNIY-ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPA 122 (152)
T ss_dssp TTBC-TTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHTSCCTTSCS
T ss_pred CCCC-CCCEEechhhcCCCCCCCcHHHHHHHHHHHHhCCCCCccc
Confidence 9999 59999999999999999999999999999999994 5555
No 4
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=1.7e-37 Score=208.88 Aligned_cols=100 Identities=22% Similarity=0.495 Sum_probs=93.1
Q ss_pred ccccccchHhHHHH-----------------hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeeccc-ccCce
Q psy11961 5 SAGTRRMNIDVIKL-----------------IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKI-YHPNI 66 (109)
Q Consensus 5 ~~~~~Rl~~d~~~l-----------------~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i-~HPnv 66 (109)
+.+.+||++|+++| .+|++.|.||++|||+||.|+++|.||++||++||+|+|.|++ |||||
T Consensus 19 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv 98 (136)
T 2h2y_A 19 GNANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHV 98 (136)
T ss_dssp TSHHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTTB
T ss_pred hHHHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCcC
Confidence 46789999999865 5588889999999999999999999999999999999999996 99999
Q ss_pred eCCCCeEEccCCCCCCCCCCCHHHHHHHHHHhhcCCCCC
Q psy11961 67 CEGSGTVCLNVINQAWTPLYDLSNIFECFLPQLLTPIRT 105 (109)
Q Consensus 67 ~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~P~~~ 105 (109)
+ .+|+||+++|.++|+|+++|.+||.+|++||.+|+++
T Consensus 99 ~-~~G~ICl~iL~~~WsP~~ti~~vL~si~sll~~p~~k 136 (136)
T 2h2y_A 99 Y-SNGDICLSVLGDDYNPSLSISGLILSIISMLSSAKEK 136 (136)
T ss_dssp C-TTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHSSSCC-
T ss_pred C-CCCEEECccccCCCCCCCcHHHHHHHHHHHHhCcCcC
Confidence 9 6999999999999999999999999999999999764
No 5
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=1.3e-37 Score=215.15 Aligned_cols=104 Identities=29% Similarity=0.670 Sum_probs=95.1
Q ss_pred CCCCccccccchHhHHHH------------------hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccc
Q psy11961 1 MSSPSAGTRRMNIDVIKL------------------IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIY 62 (109)
Q Consensus 1 ms~~~~~~~Rl~~d~~~l------------------~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~ 62 (109)
|| +.+.+||++|+++| .+|++.|.||++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus 1 M~--~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 78 (165)
T 2ucz_A 1 MS--KTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSIL 78 (165)
T ss_dssp -C--HHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCS
T ss_pred CC--hHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCc
Confidence 77 68899999999966 44777899999999999999999999999999999999999999
Q ss_pred cCceeCCCCeEEccCC-------------CCCCCCCCCHHHHHHHHHHhhcCCC-CCCC
Q psy11961 63 HPNICEGSGTVCLNVI-------------NQAWTPLYDLSNIFECFLPQLLTPI-RTPL 107 (109)
Q Consensus 63 HPnv~~~~G~icl~~l-------------~~~W~p~~~i~~il~~i~~ll~~P~-~~~l 107 (109)
||||+ .+|+||+++| .++|+|+++|.+||.+|+++|.+|+ ++||
T Consensus 79 HPNv~-~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~ 136 (165)
T 2ucz_A 79 HPNIY-PNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGA 136 (165)
T ss_dssp CTTBC-TTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCC
T ss_pred cCCCC-CCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCch
Confidence 99999 5899999999 6899999999999999999999995 5555
No 6
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=1.4e-37 Score=212.40 Aligned_cols=103 Identities=35% Similarity=0.816 Sum_probs=96.0
Q ss_pred CccccccchHhHHHH-----------------hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCce
Q psy11961 4 PSAGTRRMNIDVIKL-----------------IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNI 66 (109)
Q Consensus 4 ~~~~~~Rl~~d~~~l-----------------~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv 66 (109)
++.+.|||++|+++| .+|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 2 a~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 81 (151)
T 4gpr_A 2 AAMAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNI 81 (151)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceE
Confidence 467889999999865 558888999999999999999999999999999999999999999999
Q ss_pred eCCCCeEEccCCCCCCCCCCCHHHHHHHHHHhhcCCC-CCCC
Q psy11961 67 CEGSGTVCLNVINQAWTPLYDLSNIFECFLPQLLTPI-RTPL 107 (109)
Q Consensus 67 ~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~P~-~~~l 107 (109)
+ .+|+||+++|.++|+|+++|.+||.+|+++|.+|+ ++||
T Consensus 82 ~-~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~ 122 (151)
T 4gpr_A 82 N-KNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPL 122 (151)
T ss_dssp C-TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHCCCTTSCS
T ss_pred C-CCCEEEcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCch
Confidence 9 69999999999999999999999999999999995 5555
No 7
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=3.2e-37 Score=211.31 Aligned_cols=105 Identities=31% Similarity=0.705 Sum_probs=96.2
Q ss_pred CCccccccchHhHHHH-----------------hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCc
Q psy11961 3 SPSAGTRRMNIDVIKL-----------------IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPN 65 (109)
Q Consensus 3 ~~~~~~~Rl~~d~~~l-----------------~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPn 65 (109)
|++.+.+||++|+++| ++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 2 ~~~~~~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 81 (155)
T 1jat_A 2 SAASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPN 81 (155)
T ss_dssp -CCSCCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTT
T ss_pred chHHHHHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCC
Confidence 3467889999999976 44888899999999999999999999999999999999999999999
Q ss_pred eeCCCCeEEccCCCCCCCCCCCHHHHHHHHHHhhcCCC-CCCCC
Q psy11961 66 ICEGSGTVCLNVINQAWTPLYDLSNIFECFLPQLLTPI-RTPLI 108 (109)
Q Consensus 66 v~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~P~-~~~l~ 108 (109)
|+ .+|.||+++|.++|+|+++|.+||.+|+++|.+|+ ++||.
T Consensus 82 v~-~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n 124 (155)
T 1jat_A 82 ID-RLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLA 124 (155)
T ss_dssp BC-TTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTC
T ss_pred CC-CCCEEEchhhccCCCCCCCHHHHHHHHHHHHhCCCCCCccc
Confidence 99 79999999999999999999999999999999994 56653
No 8
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=4.3e-37 Score=210.90 Aligned_cols=102 Identities=31% Similarity=0.675 Sum_probs=95.1
Q ss_pred ccccccchHhHHHH-----------------hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCcee
Q psy11961 5 SAGTRRMNIDVIKL-----------------IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNIC 67 (109)
Q Consensus 5 ~~~~~Rl~~d~~~l-----------------~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~ 67 (109)
+.+.+||++|+++| .+|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 8 ~~~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 87 (156)
T 2e2c_A 8 HSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVD 87 (156)
T ss_dssp CCHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCCc
Confidence 56789999999965 4588889999999999999999999999999999999999999999999
Q ss_pred CCCCeEEccCCCCCCCCCCCHHHHHHHHHHhhcCC-CCCCC
Q psy11961 68 EGSGTVCLNVINQAWTPLYDLSNIFECFLPQLLTP-IRTPL 107 (109)
Q Consensus 68 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~P-~~~~l 107 (109)
.+|.||+++|.++|+|+++|.+||.+|+++|.+| .++||
T Consensus 88 -~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~pn~~~p~ 127 (156)
T 2e2c_A 88 -QSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPL 127 (156)
T ss_dssp -TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCS
T ss_pred -cCceEECccccccCCCCCcHHHHHHHHHHHHhCCCCCCHH
Confidence 5999999999999999999999999999999999 45665
No 9
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.5e-37 Score=211.71 Aligned_cols=103 Identities=33% Similarity=0.733 Sum_probs=94.4
Q ss_pred ccccccchHhHHHH-----------------hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCcee
Q psy11961 5 SAGTRRMNIDVIKL-----------------IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNIC 67 (109)
Q Consensus 5 ~~~~~Rl~~d~~~l-----------------~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~ 67 (109)
..+.+||++|+++| ++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 4 ~~~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 83 (154)
T 2c2v_B 4 AGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVD 83 (154)
T ss_dssp CSCCHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBC
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCcCc
Confidence 46789999999965 4588889999999999999999999999999999999999999999999
Q ss_pred CCCCeEEccCCCCCCCCCCCHHHHHHHHHHhhcCCC-CCCCC
Q psy11961 68 EGSGTVCLNVINQAWTPLYDLSNIFECFLPQLLTPI-RTPLI 108 (109)
Q Consensus 68 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~P~-~~~l~ 108 (109)
.+|+||+++|.++|+|+++|.+||.+|+++|.+|+ ++||.
T Consensus 84 -~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n 124 (154)
T 2c2v_B 84 -KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLA 124 (154)
T ss_dssp -TTCBBCCHHHHTSCCTTCCHHHHHHHHHHHTTSCCCCCC--
T ss_pred -cCCeEEchhccCCCCCCCcHHHHHHHHHHHHhCCCCCCccc
Confidence 68999999999999999999999999999999995 56653
No 10
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=5.1e-37 Score=211.08 Aligned_cols=103 Identities=30% Similarity=0.749 Sum_probs=94.8
Q ss_pred ccccccchHhHHHHhh--------------------CCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccC
Q psy11961 5 SAGTRRMNIDVIKLIE--------------------SKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHP 64 (109)
Q Consensus 5 ~~~~~Rl~~d~~~l~~--------------------w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HP 64 (109)
+.+.+||++|+++|.+ |+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus 7 ~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 86 (159)
T 2bep_A 7 NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHP 86 (159)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCCcc
Confidence 6788999999987753 66679999999999999999999999999999999999999999
Q ss_pred ceeCCCCeEEccCCCCCCCCCCCHHHHHHHHHHhhcCCC-CCCC
Q psy11961 65 NICEGSGTVCLNVINQAWTPLYDLSNIFECFLPQLLTPI-RTPL 107 (109)
Q Consensus 65 nv~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~P~-~~~l 107 (109)
||+..+|.||+++|.++|+|+++|.+||.+|+++|.+|+ ++||
T Consensus 87 ni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~ 130 (159)
T 2bep_A 87 NISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQ 130 (159)
T ss_dssp TBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCS
T ss_pred CCCCCCCEEeChhhhccCCCCCcHHHHHHHHHHHHhCCCCCCcc
Confidence 999558999999999999999999999999999999994 5555
No 11
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=7.4e-37 Score=208.33 Aligned_cols=101 Identities=35% Similarity=0.738 Sum_probs=93.0
Q ss_pred ccccchHhHHHH-----------------hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCceeCC
Q psy11961 7 GTRRMNIDVIKL-----------------IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEG 69 (109)
Q Consensus 7 ~~~Rl~~d~~~l-----------------~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~~~ 69 (109)
+.+||++|+++| .+|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+ .
T Consensus 2 ~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~-~ 80 (149)
T 2r0j_A 2 IPRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNID-K 80 (149)
T ss_dssp CCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBC-T
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCC-C
Confidence 358898888866 4588889999999999999999999999999999999999999999999 5
Q ss_pred CCeEEccCCCCCCCCCCCHHHHHHHHHHhhcCCC-CCCCC
Q psy11961 70 SGTVCLNVINQAWTPLYDLSNIFECFLPQLLTPI-RTPLI 108 (109)
Q Consensus 70 ~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~P~-~~~l~ 108 (109)
+|+||+++|.++|+|+++|.+||.+|+++|.+|+ ++||.
T Consensus 81 ~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n 120 (149)
T 2r0j_A 81 LGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLD 120 (149)
T ss_dssp TCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSS
T ss_pred CCEEechhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCchh
Confidence 8999999999999999999999999999999994 56653
No 12
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=6.1e-37 Score=214.46 Aligned_cols=103 Identities=26% Similarity=0.614 Sum_probs=94.8
Q ss_pred ccccccchHhHHHH-----------------hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCcee
Q psy11961 5 SAGTRRMNIDVIKL-----------------IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNIC 67 (109)
Q Consensus 5 ~~~~~Rl~~d~~~l-----------------~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~ 67 (109)
+.+.+||++|+++| .+|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 29 ~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~ 108 (179)
T 1i7k_A 29 GPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVD 108 (179)
T ss_dssp -CHHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBC
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCccc
Confidence 56788999999965 4588889999999999999999999999999999999999999999999
Q ss_pred CCCCeEEccCCCCCCCCCCCHHHHHHHHHHhhcCCC-CCCCC
Q psy11961 68 EGSGTVCLNVINQAWTPLYDLSNIFECFLPQLLTPI-RTPLI 108 (109)
Q Consensus 68 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~P~-~~~l~ 108 (109)
.+|+||+++|.+.|+|+++|.+||.+|+++|.+|+ ++||.
T Consensus 109 -~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln 149 (179)
T 1i7k_A 109 -TQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLN 149 (179)
T ss_dssp -TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSC
T ss_pred -cCCeEEcccCcCcCCCCCCHHHHHHHHHHHHhCCCCcchhh
Confidence 59999999999999999999999999999999994 56653
No 13
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=3.9e-37 Score=212.46 Aligned_cols=102 Identities=26% Similarity=0.623 Sum_probs=94.2
Q ss_pred ccccccchHhHHHH------------------hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCce
Q psy11961 5 SAGTRRMNIDVIKL------------------IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNI 66 (109)
Q Consensus 5 ~~~~~Rl~~d~~~l------------------~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv 66 (109)
+.+.|||++|+++| .+|++.|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 2 ~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV 81 (164)
T 3h8k_A 2 GTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 81 (164)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTB
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCC
Confidence 56789999999855 558888999999999999999999999999999999999999999999
Q ss_pred eCCCCeEEccCCC-------------CCCCCCCCHHHHHHHHHHhhcCCC-CCCC
Q psy11961 67 CEGSGTVCLNVIN-------------QAWTPLYDLSNIFECFLPQLLTPI-RTPL 107 (109)
Q Consensus 67 ~~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ll~~P~-~~~l 107 (109)
+ .+|+||+++|. ++|+|+++|.+||.+|+++|.+|+ ++||
T Consensus 82 ~-~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~ 135 (164)
T 3h8k_A 82 Y-PDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGA 135 (164)
T ss_dssp C-TTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCS
T ss_pred C-CCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCcc
Confidence 9 69999999996 789999999999999999999995 5555
No 14
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=8.6e-37 Score=211.47 Aligned_cols=102 Identities=35% Similarity=0.845 Sum_probs=95.0
Q ss_pred ccccccchHhHHHH-----------------hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCcee
Q psy11961 5 SAGTRRMNIDVIKL-----------------IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNIC 67 (109)
Q Consensus 5 ~~~~~Rl~~d~~~l-----------------~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~ 67 (109)
+.+.+||++|+++| .+|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 20 ~~~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~ 99 (166)
T 2ayv_A 20 QGALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNIN 99 (166)
T ss_dssp TTHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcCC
Confidence 46788999999965 5588889999999999999999999999999999999999999999999
Q ss_pred CCCCeEEccCCCCCCCCCCCHHHHHHHHHHhhcCCC-CCCC
Q psy11961 68 EGSGTVCLNVINQAWTPLYDLSNIFECFLPQLLTPI-RTPL 107 (109)
Q Consensus 68 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~P~-~~~l 107 (109)
.+|.||+++|.++|+|+++|.+||.+|+++|.+|+ ++||
T Consensus 100 -~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pn~~~Pl 139 (166)
T 2ayv_A 100 -SQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPL 139 (166)
T ss_dssp -TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCS
T ss_pred -CCCeEEcccccccCCCCCcHHHHHHHHHHHHhCCCCCchh
Confidence 69999999999999999999999999999999995 5565
No 15
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=1.3e-36 Score=215.90 Aligned_cols=105 Identities=31% Similarity=0.760 Sum_probs=95.1
Q ss_pred CCCCccccccchHhHHHHh--------------------hCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecc
Q psy11961 1 MSSPSAGTRRMNIDVIKLI--------------------ESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNK 60 (109)
Q Consensus 1 ms~~~~~~~Rl~~d~~~l~--------------------~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~ 60 (109)
|| +.+.+||++|+++|+ +|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 2 Ms--~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 79 (201)
T 3k9o_A 2 MA--NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK 79 (201)
T ss_dssp ----CTTHHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred Cc--HHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccC
Confidence 77 678999999998763 37777999999999999999999999999999999999999
Q ss_pred cccCceeCCCCeEEccCCCCCCCCCCCHHHHHHHHHHhhcCCC-CCCC
Q psy11961 61 IYHPNICEGSGTVCLNVINQAWTPLYDLSNIFECFLPQLLTPI-RTPL 107 (109)
Q Consensus 61 i~HPnv~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~P~-~~~l 107 (109)
+|||||+..+|.||+++|.++|+|+++|.+||.+|+++|.+|+ ++||
T Consensus 80 i~HPnv~~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~p~p~~p~ 127 (201)
T 3k9o_A 80 IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQ 127 (201)
T ss_dssp CCBTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCS
T ss_pred cccCCCcCCCCeeeCcccccCCCCCCCHHHHHHHHHHHhcCCCCCCcc
Confidence 9999999559999999999999999999999999999999995 5565
No 16
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=1.5e-36 Score=206.99 Aligned_cols=102 Identities=32% Similarity=0.826 Sum_probs=94.5
Q ss_pred ccccccchHhHHHH-----------------hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCcee
Q psy11961 5 SAGTRRMNIDVIKL-----------------IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNIC 67 (109)
Q Consensus 5 ~~~~~Rl~~d~~~l-----------------~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~ 67 (109)
..+.+||++|+++| ++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 3 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 82 (150)
T 1z2u_A 3 HMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 82 (150)
T ss_dssp CHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcCC
Confidence 45779999999976 4488889999999999999999999999999999999999999999999
Q ss_pred CCCCeEEccCCCCCCCCCCCHHHHHHHHHHhhcCCC-CCCC
Q psy11961 68 EGSGTVCLNVINQAWTPLYDLSNIFECFLPQLLTPI-RTPL 107 (109)
Q Consensus 68 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~P~-~~~l 107 (109)
.+|+||+++|.++|+|+++|.+||.+|+++|.+|+ ++||
T Consensus 83 -~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~ 122 (150)
T 1z2u_A 83 -SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL 122 (150)
T ss_dssp -TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCS
T ss_pred -CCCeEeeccccCCCCCCCCHHHHHHHHHHHhhCCCCCCcc
Confidence 69999999999999999999999999999999995 5555
No 17
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=217.54 Aligned_cols=107 Identities=69% Similarity=1.170 Sum_probs=96.8
Q ss_pred CCCCccccccchHhHHHH-------------hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCcee
Q psy11961 1 MSSPSAGTRRMNIDVIKL-------------IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNIC 67 (109)
Q Consensus 1 ms~~~~~~~Rl~~d~~~l-------------~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~ 67 (109)
|++++++.|||++|+++| .+|++.|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+
T Consensus 20 ms~~~~a~~RL~kEl~~l~~~g~~v~~~ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~ 99 (179)
T 2z5d_A 20 MSSPSPGKRRMDTDVIKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNID 99 (179)
T ss_dssp ---CCHHHHHHHHHHHHHHHSSSCEEEEEETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred CCCchHHHHHHHHHHHhcCcCCCEEEECCCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCC
Confidence 677777899999999976 5688889999999999999999999999999999999999999999999
Q ss_pred CCCCeEEccCCCCCCCCCCCHHHHHHH-HHHhhcCCC-CCCC
Q psy11961 68 EGSGTVCLNVINQAWTPLYDLSNIFEC-FLPQLLTPI-RTPL 107 (109)
Q Consensus 68 ~~~G~icl~~l~~~W~p~~~i~~il~~-i~~ll~~P~-~~~l 107 (109)
..+|.||+++|.++|+|+++|.+||.+ |+++|.+|+ ++||
T Consensus 100 ~~~G~ICL~iL~~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~ 141 (179)
T 2z5d_A 100 EASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPL 141 (179)
T ss_dssp TTTCBBCHHHHHHHCCTTCCTTHHHHTHHHHHHHSCCCSSCS
T ss_pred CCCCeEeccccccCCCCCCCHHHHHHHHHHHHHhCCCCCCcc
Confidence 449999999999999999999999999 999999995 5555
No 18
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=5.3e-37 Score=210.87 Aligned_cols=102 Identities=27% Similarity=0.608 Sum_probs=94.6
Q ss_pred ccccccchHhHHHH-----------------hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCcee
Q psy11961 5 SAGTRRMNIDVIKL-----------------IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNIC 67 (109)
Q Consensus 5 ~~~~~Rl~~d~~~l-----------------~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~ 67 (109)
+.+.+||++|+++| .+|++.|.||+||||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 12 ~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 91 (158)
T 1zdn_A 12 PHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVG 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccCCCC
Confidence 56789999999965 4588889999999999999999999999999999999999999999999
Q ss_pred CCCCeEEccCCCCCCCCCCCHHHHHHHHHHhhcCCC-CCCC
Q psy11961 68 EGSGTVCLNVINQAWTPLYDLSNIFECFLPQLLTPI-RTPL 107 (109)
Q Consensus 68 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~P~-~~~l 107 (109)
.+|+||+++|.++|+|+++|.+||.+|+++|.+|+ ++||
T Consensus 92 -~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~p~ 131 (158)
T 1zdn_A 92 -ANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESAL 131 (158)
T ss_dssp -TTSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCS
T ss_pred -CCCEEehhhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCcc
Confidence 58999999999999999999999999999999995 4554
No 19
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=1.5e-36 Score=210.10 Aligned_cols=102 Identities=34% Similarity=0.843 Sum_probs=95.0
Q ss_pred ccccccchHhHHHH-----------------hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCcee
Q psy11961 5 SAGTRRMNIDVIKL-----------------IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNIC 67 (109)
Q Consensus 5 ~~~~~Rl~~d~~~l-----------------~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~ 67 (109)
+.+.+||++|+++| .+|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 18 ~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV~ 97 (165)
T 2c4o_A 18 SMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 97 (165)
T ss_dssp HHHHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcCC
Confidence 56789999999965 5588889999999999999999999999999999999999999999999
Q ss_pred CCCCeEEccCCCCCCCCCCCHHHHHHHHHHhhcCCC-CCCC
Q psy11961 68 EGSGTVCLNVINQAWTPLYDLSNIFECFLPQLLTPI-RTPL 107 (109)
Q Consensus 68 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~P~-~~~l 107 (109)
.+|+||+++|.++|+|+++|.+||.+|+++|.+|+ ++||
T Consensus 98 -~~G~ICl~iL~~~W~P~~ti~~vL~si~~ll~~pn~~~P~ 137 (165)
T 2c4o_A 98 -SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL 137 (165)
T ss_dssp -TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCS
T ss_pred -CCCeEeehhhcCCCCCcCcHHHHHHHHHHHHhCCCCCccc
Confidence 69999999999999999999999999999999995 5555
No 20
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=6.9e-37 Score=210.13 Aligned_cols=104 Identities=33% Similarity=0.604 Sum_probs=94.0
Q ss_pred CCCCccccccchHhHHHH----------------------hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeee
Q psy11961 1 MSSPSAGTRRMNIDVIKL----------------------IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFM 58 (109)
Q Consensus 1 ms~~~~~~~Rl~~d~~~l----------------------~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~ 58 (109)
|| +.+.+||++|+++| ++|+++|.||++|||+||.|+++|.||++||++||+|+|.
T Consensus 1 Ms--~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~ 78 (157)
T 2gjd_A 1 MS--SLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFP 78 (157)
T ss_dssp ----CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECC
T ss_pred CC--hHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeecc
Confidence 77 57889999998765 4578889999999999999999999999999999999999
Q ss_pred cccccCceeCCCCeEEccCCCC--CCCCCCCHHHHHHHHHHhhcCC-CCCCC
Q psy11961 59 NKIYHPNICEGSGTVCLNVINQ--AWTPLYDLSNIFECFLPQLLTP-IRTPL 107 (109)
Q Consensus 59 t~i~HPnv~~~~G~icl~~l~~--~W~p~~~i~~il~~i~~ll~~P-~~~~l 107 (109)
|++|||||+ .+|+||+++|.+ +|+|+++|.+||.+|+++|.+| .++|+
T Consensus 79 t~i~HPnv~-~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~ 129 (157)
T 2gjd_A 79 AGFYHPNVY-PSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPA 129 (157)
T ss_dssp TTCCCTTBC-TTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTCCC
T ss_pred CCCccCCCC-CCCcEeeecccCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcc
Confidence 999999999 699999999976 7999999999999999999999 45555
No 21
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.9e-37 Score=213.26 Aligned_cols=105 Identities=24% Similarity=0.564 Sum_probs=95.9
Q ss_pred CCCCccccccchHhHHHH-----------------hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeeccccc
Q psy11961 1 MSSPSAGTRRMNIDVIKL-----------------IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYH 63 (109)
Q Consensus 1 ms~~~~~~~Rl~~d~~~l-----------------~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~H 63 (109)
|+ +.+.+||++|+++| ++|.++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus 20 M~--~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H 97 (169)
T 1yrv_A 20 MH--GRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFH 97 (169)
T ss_dssp GG--CHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCC
T ss_pred cC--hHHHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCcc
Confidence 55 57889999999966 458888999999999999999999999999999999999999999
Q ss_pred CceeCCCCeEEccCCC--CCCCCCCCHHHHHHHHHHhhcCCC-CCCC
Q psy11961 64 PNICEGSGTVCLNVIN--QAWTPLYDLSNIFECFLPQLLTPI-RTPL 107 (109)
Q Consensus 64 Pnv~~~~G~icl~~l~--~~W~p~~~i~~il~~i~~ll~~P~-~~~l 107 (109)
|||+..+|+||+++|. ++|+|+++|.+||.+|+++|.+|+ ++||
T Consensus 98 PNI~~~~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pl 144 (169)
T 1yrv_A 98 PNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPV 144 (169)
T ss_dssp TTBCTTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCS
T ss_pred CcccCCCCeEeehhhcCCcCCCCcCCHHHHHHHHHHHHhCCCCCCch
Confidence 9993379999999998 899999999999999999999994 5565
No 22
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=1e-36 Score=213.88 Aligned_cols=105 Identities=30% Similarity=0.730 Sum_probs=93.9
Q ss_pred CCCCccccccchHhHHHH------------------hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccc
Q psy11961 1 MSSPSAGTRRMNIDVIKL------------------IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIY 62 (109)
Q Consensus 1 ms~~~~~~~Rl~~d~~~l------------------~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~ 62 (109)
|++ +.+.|||++|+++| ++|++.|.||++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus 3 m~~-~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 81 (183)
T 3rz3_A 3 MGS-PSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMW 81 (183)
T ss_dssp --C-CHHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred Ccc-hHHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCc
Confidence 554 46789999999865 55888899999999999999999999999999999999999999
Q ss_pred cCceeCCCCeEEccCCC-------------CCCCCCCCHHHHHHHHHHhhcCCC-CCCC
Q psy11961 63 HPNICEGSGTVCLNVIN-------------QAWTPLYDLSNIFECFLPQLLTPI-RTPL 107 (109)
Q Consensus 63 HPnv~~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ll~~P~-~~~l 107 (109)
||||+ .+|+||+++|. ++|+|+++|++||.+|++||.+|+ ++||
T Consensus 82 HPnV~-~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~ 139 (183)
T 3rz3_A 82 HPNIY-ETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPA 139 (183)
T ss_dssp CTTBC-TTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCCCSSCS
T ss_pred cCCCC-CCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCCCcc
Confidence 99999 59999999996 889999999999999999999995 5554
No 23
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=1.2e-36 Score=207.31 Aligned_cols=101 Identities=34% Similarity=0.756 Sum_probs=92.7
Q ss_pred ccccchHhHHHH------------------hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCceeC
Q psy11961 7 GTRRMNIDVIKL------------------IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICE 68 (109)
Q Consensus 7 ~~~Rl~~d~~~l------------------~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~~ 68 (109)
+.+||++|+++| ++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~ 81 (149)
T 1fxt_A 2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS 81 (149)
T ss_dssp CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCS
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcC
Confidence 468888888855 45888899999999999999999999999999999999999999999994
Q ss_pred CCCeEEccCCCCCCCCCCCHHHHHHHHHHhhcCCC-CCCC
Q psy11961 69 GSGTVCLNVINQAWTPLYDLSNIFECFLPQLLTPI-RTPL 107 (109)
Q Consensus 69 ~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~P~-~~~l 107 (109)
.+|.||+++|.++|+|+++|.+||.+|+++|.+|+ ++||
T Consensus 82 ~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~ 121 (149)
T 1fxt_A 82 VTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQ 121 (149)
T ss_dssp SSCCBCCHHHHTSCCTTCCHHHHHHHHHHHHHSCCSSSCS
T ss_pred CCCeEeCCcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcc
Confidence 49999999999999999999999999999999994 5555
No 24
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.8e-36 Score=209.27 Aligned_cols=102 Identities=34% Similarity=0.753 Sum_probs=94.7
Q ss_pred ccccccchHhHHHH-----------------hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCcee
Q psy11961 5 SAGTRRMNIDVIKL-----------------IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNIC 67 (109)
Q Consensus 5 ~~~~~Rl~~d~~~l-----------------~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~ 67 (109)
+.+.+||++|+++| ++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 3 ~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~ 82 (169)
T 1yh2_A 3 MQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNID 82 (169)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccCC
Confidence 46789999999965 5588889999999999999999999999999999999999999999999
Q ss_pred CCCCeEEccCCC----CCCCCCCCHHHHHHHHHHhhcCCC-CCCC
Q psy11961 68 EGSGTVCLNVIN----QAWTPLYDLSNIFECFLPQLLTPI-RTPL 107 (109)
Q Consensus 68 ~~~G~icl~~l~----~~W~p~~~i~~il~~i~~ll~~P~-~~~l 107 (109)
.+|.||+++|. ++|+|+++|.+||.+|+++|.+|+ ++||
T Consensus 83 -~~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~ 126 (169)
T 1yh2_A 83 -SAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPL 126 (169)
T ss_dssp -TTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCS
T ss_pred -cCCeEecccccCCcccCCCCCCcHHHHHHHHHHHHhCCCCcchH
Confidence 79999999998 899999999999999999999995 5555
No 25
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=3.8e-36 Score=209.24 Aligned_cols=103 Identities=29% Similarity=0.705 Sum_probs=91.7
Q ss_pred CccccccchHhHHHH------------------hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCc
Q psy11961 4 PSAGTRRMNIDVIKL------------------IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPN 65 (109)
Q Consensus 4 ~~~~~~Rl~~d~~~l------------------~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPn 65 (109)
.+++.|||++|+++| ++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++||||
T Consensus 15 ~~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HPN 94 (172)
T 2awf_A 15 VPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPN 94 (172)
T ss_dssp CCTTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTT
T ss_pred hHHHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccCC
Confidence 467889999999865 45888899999999999999999999999999999999999999999
Q ss_pred eeCCCCeEEccCCC-------------CCCCCCCCHHHHHHHHHHhhcCCC-CCCC
Q psy11961 66 ICEGSGTVCLNVIN-------------QAWTPLYDLSNIFECFLPQLLTPI-RTPL 107 (109)
Q Consensus 66 v~~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ll~~P~-~~~l 107 (109)
|+ .+|+||+++|. ++|+|+++|++||.+|++||.+|+ ++||
T Consensus 95 V~-~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~ 149 (172)
T 2awf_A 95 VD-KNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPA 149 (172)
T ss_dssp BC-TTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC------
T ss_pred CC-CCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCcc
Confidence 99 58999999996 689999999999999999999994 5554
No 26
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=5.9e-36 Score=211.62 Aligned_cols=103 Identities=27% Similarity=0.687 Sum_probs=93.0
Q ss_pred cccccchHhHHHHhh------------------------------CCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCee
Q psy11961 6 AGTRRMNIDVIKLIE------------------------------SKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSI 55 (109)
Q Consensus 6 ~~~~Rl~~d~~~l~~------------------------------w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v 55 (109)
.+.+||++|+++|++ |+++|.||++|||+||+|+++|.||++||++||+|
T Consensus 32 ~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V 111 (193)
T 2f4z_A 32 REQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKM 111 (193)
T ss_dssp CHHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEE
T ss_pred HHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeE
Confidence 456799998887654 55569999999999999999999999999999999
Q ss_pred eeecccccCceeCCCCeEEccCCCCCCCCCCCHHHHHHHHHHhhcCCC-CCCCC
Q psy11961 56 GFMNKIYHPNICEGSGTVCLNVINQAWTPLYDLSNIFECFLPQLLTPI-RTPLI 108 (109)
Q Consensus 56 ~f~t~i~HPnv~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~P~-~~~l~ 108 (109)
+|.|++|||||+..+|.||+++|.++|+|+++|.+||.+|+++|.+|+ ++||.
T Consensus 112 ~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pnp~~P~n 165 (193)
T 2f4z_A 112 KFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQD 165 (193)
T ss_dssp EESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSC
T ss_pred EEecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHHHHHHHhCCCCCCccc
Confidence 999999999999558999999999999999999999999999999994 55553
No 27
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=1.9e-36 Score=217.30 Aligned_cols=105 Identities=30% Similarity=0.673 Sum_probs=96.3
Q ss_pred CccccccchHhHHHH-----------------hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCce
Q psy11961 4 PSAGTRRMNIDVIKL-----------------IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNI 66 (109)
Q Consensus 4 ~~~~~~Rl~~d~~~l-----------------~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv 66 (109)
.+.+.+||++|+++| ++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||
T Consensus 21 ~s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI 100 (216)
T 2pwq_A 21 GSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNI 100 (216)
T ss_dssp SCHHHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred cCHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCCC
Confidence 367889999999965 458888999999999999999999999999999999999999999999
Q ss_pred eCCCCeEEccCCCCCCCCCCCHHHHHHHHHHhhcCCC-CCCCC
Q psy11961 67 CEGSGTVCLNVINQAWTPLYDLSNIFECFLPQLLTPI-RTPLI 108 (109)
Q Consensus 67 ~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~P~-~~~l~ 108 (109)
+..+|.||+++|.++|+|+++|.+||.+|++||.+|+ ++||.
T Consensus 101 ~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln 143 (216)
T 2pwq_A 101 SSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQD 143 (216)
T ss_dssp CTTTCBBCCHHHHHHCCTTCCHHHHHHHHHHHHHSCCTTSCSC
T ss_pred cCCCCEEEchhhcccCCCCCcHHHHHHHHHHHHhCCCCCCccc
Confidence 9558999999999999999999999999999999994 55653
No 28
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=1.6e-36 Score=207.43 Aligned_cols=102 Identities=54% Similarity=0.984 Sum_probs=93.4
Q ss_pred cccccchHhHHHH--------------hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCceeCCCC
Q psy11961 6 AGTRRMNIDVIKL--------------IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSG 71 (109)
Q Consensus 6 ~~~~Rl~~d~~~l--------------~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~~~~G 71 (109)
++.|||++|+++| ++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+..+|
T Consensus 2 sa~~Rl~kEl~~l~~~~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~~G 81 (152)
T 2onu_A 2 TSLTRKQCDFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASG 81 (152)
T ss_dssp -CCCHHHHTHHHHHHHTCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTTC
T ss_pred hHHHHHHHHHHhcCcCCCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcCcCC
Confidence 4679999999865 45888899999999999999999999999999999999999999999995589
Q ss_pred eEEccCCCCCCCCCCCHHHHHHH-HHHhhcCCC-CCCC
Q psy11961 72 TVCLNVINQAWTPLYDLSNIFEC-FLPQLLTPI-RTPL 107 (109)
Q Consensus 72 ~icl~~l~~~W~p~~~i~~il~~-i~~ll~~P~-~~~l 107 (109)
.||+++|.++|+|+++|.+||.+ |++||.+|+ ++||
T Consensus 82 ~iCl~il~~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~ 119 (152)
T 2onu_A 82 SVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPL 119 (152)
T ss_dssp BBCHHHHHHHCCTTCCHHHHHHTHHHHHHHSCCCSSCS
T ss_pred eEecccccccCCCCCCHHHHHHHHHHHHHhCCCCCCcc
Confidence 99999999999999999999999 689999994 5565
No 29
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=8.6e-36 Score=200.66 Aligned_cols=92 Identities=23% Similarity=0.592 Sum_probs=86.3
Q ss_pred cccchHhHHHHh-------------------hCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccc--cCce
Q psy11961 8 TRRMNIDVIKLI-------------------ESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIY--HPNI 66 (109)
Q Consensus 8 ~~Rl~~d~~~l~-------------------~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~--HPnv 66 (109)
.+||++|+++|+ +|++.|.||+|||||||.|+++|.||++||++||+|+|.|+++ ||||
T Consensus 24 ~~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HPNV 103 (136)
T 2a7l_A 24 QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHV 103 (136)
T ss_dssp CHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTB
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCccC
Confidence 499999998763 4677799999999999999999999999999999999999999 9999
Q ss_pred eCCCCeEEccCCCCCCCCCCCHHHHHHHHHHhhc
Q psy11961 67 CEGSGTVCLNVINQAWTPLYDLSNIFECFLPQLL 100 (109)
Q Consensus 67 ~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~ 100 (109)
+ .+|+||+++|.++|+|+++|++||.+|++||.
T Consensus 104 ~-~~G~ICL~iL~~~WsP~~ti~~vL~sI~slL~ 136 (136)
T 2a7l_A 104 Y-SNGHICLSILTEDWSPALSVQSVCLSIISMLS 136 (136)
T ss_dssp C-TTCBBCCGGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred C-CCCeEEchhcCCCCCCCCcHHHHHHHHHHHhC
Confidence 9 69999999999999999999999999999984
No 30
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=4.2e-36 Score=212.54 Aligned_cols=102 Identities=29% Similarity=0.689 Sum_probs=94.5
Q ss_pred ccccccchHhHHHH-----------------hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCcee
Q psy11961 5 SAGTRRMNIDVIKL-----------------IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNIC 67 (109)
Q Consensus 5 ~~~~~Rl~~d~~~l-----------------~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~ 67 (109)
+.+.+||++|+++| ++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|++|||||+
T Consensus 47 s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~ 126 (194)
T 3bzh_A 47 STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNIN 126 (194)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceEC
Confidence 34678999999965 4588889999999999999999999999999999999999999999999
Q ss_pred CCCCeEEccCCCCCCCCCCCHHHHHHHHHHhhcCCC-CCCC
Q psy11961 68 EGSGTVCLNVINQAWTPLYDLSNIFECFLPQLLTPI-RTPL 107 (109)
Q Consensus 68 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~P~-~~~l 107 (109)
.+|.||+++|.+.|+|+++|.+||.+|++||.+|+ ++||
T Consensus 127 -~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pl 166 (194)
T 3bzh_A 127 -SQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL 166 (194)
T ss_dssp -TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCS
T ss_pred -CCCceechhhhccCCCcCcHHHHHHHHHHHHhCCCCccch
Confidence 69999999999999999999999999999999995 5565
No 31
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=9.2e-36 Score=205.22 Aligned_cols=104 Identities=30% Similarity=0.623 Sum_probs=94.7
Q ss_pred CCCCccccccchHhHHHHh----------------------hCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeee
Q psy11961 1 MSSPSAGTRRMNIDVIKLI----------------------ESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFM 58 (109)
Q Consensus 1 ms~~~~~~~Rl~~d~~~l~----------------------~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~ 58 (109)
|+ +.+.+||++|+++|+ +|+++|.||++|||+||.|+++|.||++||++||+|+|.
T Consensus 4 M~--~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~ 81 (161)
T 2grr_A 4 MS--GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFE 81 (161)
T ss_dssp CC--HHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES
T ss_pred cc--HHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEe
Confidence 55 678899999998653 477779999999999999999999999999999999999
Q ss_pred cccccCceeCCCCeEEccCCCC--CCCCCCCHHHHHHHHHHhhcCC-CCCCC
Q psy11961 59 NKIYHPNICEGSGTVCLNVINQ--AWTPLYDLSNIFECFLPQLLTP-IRTPL 107 (109)
Q Consensus 59 t~i~HPnv~~~~G~icl~~l~~--~W~p~~~i~~il~~i~~ll~~P-~~~~l 107 (109)
|++|||||+ .+|.||+++|.+ +|+|+++|.+||.+|+++|.+| .++|+
T Consensus 82 t~i~HPnv~-~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~ 132 (161)
T 2grr_A 82 PPLFHPNVY-PSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPA 132 (161)
T ss_dssp SCCCSTTBC-TTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCS
T ss_pred cCcccCCCC-CCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHHhCCCCCCcc
Confidence 999999999 699999999975 8999999999999999999999 45555
No 32
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=5.5e-36 Score=206.26 Aligned_cols=101 Identities=29% Similarity=0.580 Sum_probs=92.2
Q ss_pred ccccccchHhHHH----------------HhhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCceeC
Q psy11961 5 SAGTRRMNIDVIK----------------LIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICE 68 (109)
Q Consensus 5 ~~~~~Rl~~d~~~----------------l~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~~ 68 (109)
+++.+||++|+++ |++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 5 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~- 82 (160)
T 1y8x_A 5 SAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNID- 82 (160)
T ss_dssp CHHHHHHHHHHHTCCCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBC-
T ss_pred cHHHHHHHHHHHhcCCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcCC-
Confidence 5678899888884 45677766 99999999999999999999999999999999999999999
Q ss_pred CCCeEEccCCCCCCCCCCCHHHHHHHHHHhhcCCC-CCCC
Q psy11961 69 GSGTVCLNVINQAWTPLYDLSNIFECFLPQLLTPI-RTPL 107 (109)
Q Consensus 69 ~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~P~-~~~l 107 (109)
.+|.||+++|.++|+|+++|.+||.+|+++|.+|+ ++|+
T Consensus 83 ~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~Pn~~~p~ 122 (160)
T 1y8x_A 83 LEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPL 122 (160)
T ss_dssp TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCS
T ss_pred CCCeEEcccchhhccCCCCHHHHHHHHHHHHhCCCCCCcc
Confidence 58999999999999999999999999999999994 5555
No 33
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=1.8e-35 Score=204.29 Aligned_cols=102 Identities=30% Similarity=0.616 Sum_probs=93.4
Q ss_pred ccccccchHhHHHH----------------------hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccc
Q psy11961 5 SAGTRRMNIDVIKL----------------------IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIY 62 (109)
Q Consensus 5 ~~~~~Rl~~d~~~l----------------------~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~ 62 (109)
.++.+||++|+++| ++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|
T Consensus 9 ~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i~ 88 (163)
T 3rcz_B 9 SLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLF 88 (163)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCCc
Confidence 57889999998865 45788899999999999999999999999999999999999999
Q ss_pred cCceeCCCCeEEccCCCC--CCCCCCCHHHHHHHHHHhhcCCC-CCCC
Q psy11961 63 HPNICEGSGTVCLNVINQ--AWTPLYDLSNIFECFLPQLLTPI-RTPL 107 (109)
Q Consensus 63 HPnv~~~~G~icl~~l~~--~W~p~~~i~~il~~i~~ll~~P~-~~~l 107 (109)
||||+ .+|+||+++|.+ +|+|+++|.+||.+|+++|.+|+ ++||
T Consensus 89 HPnV~-~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~ 135 (163)
T 3rcz_B 89 HPNVY-PSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPA 135 (163)
T ss_dssp STTBC-TTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTSCS
T ss_pred cCCCC-CCCcEeccccCCCCCcCCcCcHHHHHHHHHHHHhCCCCCCcc
Confidence 99999 799999999975 59999999999999999999994 5554
No 34
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=2.3e-35 Score=215.86 Aligned_cols=103 Identities=31% Similarity=0.757 Sum_probs=95.0
Q ss_pred ccccccchHhHHHHh--------------------hCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccC
Q psy11961 5 SAGTRRMNIDVIKLI--------------------ESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHP 64 (109)
Q Consensus 5 ~~~~~Rl~~d~~~l~--------------------~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HP 64 (109)
+.+.+||++|+++|+ +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus 56 ~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HP 135 (253)
T 3e46_A 56 NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHP 135 (253)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCccC
Confidence 678899999998764 377779999999999999999999999999999999999999999
Q ss_pred ceeCCCCeEEccCCCCCCCCCCCHHHHHHHHHHhhcCCC-CCCC
Q psy11961 65 NICEGSGTVCLNVINQAWTPLYDLSNIFECFLPQLLTPI-RTPL 107 (109)
Q Consensus 65 nv~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~P~-~~~l 107 (109)
||+..+|.||+++|.++|+|+++|.+||.+|+++|.+|+ ++||
T Consensus 136 NV~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pl 179 (253)
T 3e46_A 136 NISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQ 179 (253)
T ss_dssp TBCTTTCBBCCGGGTTCCCTTCCHHHHHHHHHHHHHSCCTTSCS
T ss_pred CccCCCCeeecccccCCCCCCCCHHHHHHHHHHHhcCCCCCChh
Confidence 999558999999999999999999999999999999995 5565
No 35
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=2.7e-36 Score=216.34 Aligned_cols=102 Identities=33% Similarity=0.751 Sum_probs=94.0
Q ss_pred cccccchHhHHHH------------------hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCcee
Q psy11961 6 AGTRRMNIDVIKL------------------IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNIC 67 (109)
Q Consensus 6 ~~~~Rl~~d~~~l------------------~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~ 67 (109)
.+.+||++|+++| .+|++.|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 2 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~ 81 (215)
T 1tte_A 2 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS 81 (215)
T ss_dssp TTHHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSC
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCc
Confidence 4689999999865 3688889999999999999999999999999999999999999999999
Q ss_pred CCCCeEEccCCCCCCCCCCCHHHHHHHHHHhhcCCC-CCCC
Q psy11961 68 EGSGTVCLNVINQAWTPLYDLSNIFECFLPQLLTPI-RTPL 107 (109)
Q Consensus 68 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~P~-~~~l 107 (109)
..+|.||+++|.++|+|+++|.+||.+|+++|.+|+ ++|+
T Consensus 82 ~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pl 122 (215)
T 1tte_A 82 SVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQ 122 (215)
T ss_dssp SSSSCCCSSTTTCCSCTTCCHHHHHHHHHHHHTSCCCSSCS
T ss_pred CCCCEEECccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCcc
Confidence 449999999999999999999999999999999994 5555
No 36
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=3.7e-35 Score=204.17 Aligned_cols=103 Identities=30% Similarity=0.688 Sum_probs=91.2
Q ss_pred ccccccchHhHHHHhh-----------------------------CCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCee
Q psy11961 5 SAGTRRMNIDVIKLIE-----------------------------SKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSI 55 (109)
Q Consensus 5 ~~~~~Rl~~d~~~l~~-----------------------------w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v 55 (109)
+.+.+||++|+++|++ |+++|.||++|||+||.|+++|.||++||++||+|
T Consensus 5 ~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v 84 (172)
T 2y9m_A 5 DTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKI 84 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEE
T ss_pred HHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCEE
Confidence 5677777777776654 33449999999999999999999999999999999
Q ss_pred eeec-ccccCceeCCCCeEEccCCC-CCCCCCCCHHHHHHHHHHhhcCCC-CCCC
Q psy11961 56 GFMN-KIYHPNICEGSGTVCLNVIN-QAWTPLYDLSNIFECFLPQLLTPI-RTPL 107 (109)
Q Consensus 56 ~f~t-~i~HPnv~~~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~P~-~~~l 107 (109)
+|.| ++|||||+..+|+||+++|. ++|+|+++|.+||.+|+++|.+|+ ++||
T Consensus 85 ~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~ 139 (172)
T 2y9m_A 85 SFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPL 139 (172)
T ss_dssp EECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHHHHHHHSCCTTSCS
T ss_pred EEeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCcc
Confidence 9999 99999997468999999998 899999999999999999999994 5665
No 37
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=3.5e-36 Score=209.30 Aligned_cols=102 Identities=54% Similarity=0.995 Sum_probs=93.3
Q ss_pred cccccchHhHHHH-------------hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCceeCCCCe
Q psy11961 6 AGTRRMNIDVIKL-------------IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGT 72 (109)
Q Consensus 6 ~~~~Rl~~d~~~l-------------~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~~~~G~ 72 (109)
.+.+||++|+.+| .+|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+..+|.
T Consensus 12 ~~~~RL~~El~~l~~~~~~v~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~~~G~ 91 (171)
T 1yf9_A 12 RSNRRREMDYMRLCNSTRKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGS 91 (171)
T ss_dssp -CCHHHHHHHHHHHSSSSCEEECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCB
T ss_pred cHHHHHHHHHHHHHhCCCCCCCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcccCCe
Confidence 5789999999965 558888999999999999999999999999999999999999999999955999
Q ss_pred EEccCCCCCCCCCCCHHHHHHHH-HHhhcCCC-CCCC
Q psy11961 73 VCLNVINQAWTPLYDLSNIFECF-LPQLLTPI-RTPL 107 (109)
Q Consensus 73 icl~~l~~~W~p~~~i~~il~~i-~~ll~~P~-~~~l 107 (109)
||+++|.++|+|+++|.+||.+| ++||.+|+ ++||
T Consensus 92 iCl~iL~~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~ 128 (171)
T 1yf9_A 92 VCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPL 128 (171)
T ss_dssp BCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCS
T ss_pred EeccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcc
Confidence 99999999999999999999997 79999994 5555
No 38
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=6.9e-36 Score=201.34 Aligned_cols=105 Identities=20% Similarity=0.386 Sum_probs=91.9
Q ss_pred CCCCccccccchHhHHHH---------------------hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeec
Q psy11961 1 MSSPSAGTRRMNIDVIKL---------------------IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMN 59 (109)
Q Consensus 1 ms~~~~~~~Rl~~d~~~l---------------------~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t 59 (109)
||+ .++.+||++|+++| ++|++.|.||++||||||.|+++|.||++||++||+|+|.|
T Consensus 2 m~~-~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t 80 (138)
T 1jat_B 2 MSK-VPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFIS 80 (138)
T ss_dssp -CC-CCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESB
T ss_pred cch-HHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEc
Confidence 664 46778999888854 35777899999999999999999999999999999999999
Q ss_pred ccccCceeCCCCeE--EccCCCCCCCCCCCHHHHHHHHHHhhcCCC-CCCC
Q psy11961 60 KIYHPNICEGSGTV--CLNVINQAWTPLYDLSNIFECFLPQLLTPI-RTPL 107 (109)
Q Consensus 60 ~i~HPnv~~~~G~i--cl~~l~~~W~p~~~i~~il~~i~~ll~~P~-~~~l 107 (109)
++|||||+..+|+| |++++. +|+|+++|++||.+|+++|.+|+ ++++
T Consensus 81 ~i~HPnv~~~~G~i~~cL~~l~-~W~p~~~i~~vl~~i~~ll~~pn~~~p~ 130 (138)
T 1jat_B 81 KINLPCVNPTTGEVQTDFHTLR-DWKRAYTMETLLLDLRKEMATPANKKLR 130 (138)
T ss_dssp CCCCTTBCTTTCBBCTTSHHHH-TCCTTCCHHHHHHHHHHHHTSHHHHTSC
T ss_pred ccccCCEeCCCCEEeeecccCC-CCCCcCcHHHHHHHHHHHHcCCCCCCCC
Confidence 99999999545999 898886 89999999999999999999994 4444
No 39
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.1e-35 Score=208.19 Aligned_cols=102 Identities=27% Similarity=0.540 Sum_probs=93.0
Q ss_pred CccccccchHhHHH----------------HhhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCcee
Q psy11961 4 PSAGTRRMNIDVIK----------------LIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNIC 67 (109)
Q Consensus 4 ~~~~~~Rl~~d~~~----------------l~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~ 67 (109)
.+++.+||++|+++ |++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 24 ~~~~~~RL~kEl~~l~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNV~ 102 (180)
T 2nvu_C 24 ASAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNID 102 (180)
T ss_dssp CCHHHHHHHHHHHTCCCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBC
T ss_pred ccHHHHHHHHHHHhcCCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccCCCC
Confidence 46678899999885 45677767 99999999999999999999999999999999999999999
Q ss_pred CCCCeEEccCCCCCCCCCCCHHHHHHHHHHhhcCCC-CCCC
Q psy11961 68 EGSGTVCLNVINQAWTPLYDLSNIFECFLPQLLTPI-RTPL 107 (109)
Q Consensus 68 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~P~-~~~l 107 (109)
.+|.||+++|.++|+|+++|.+||.+|+++|.+|+ ++|+
T Consensus 103 -~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~ 142 (180)
T 2nvu_C 103 -LEGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPL 142 (180)
T ss_dssp -TTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCS
T ss_pred -CCCcEEcccccccCCCCCCHHHHHHHHHHHHhCCCCCCcc
Confidence 69999999999999999999999999999999994 5555
No 40
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=2.5e-35 Score=203.15 Aligned_cols=103 Identities=17% Similarity=0.337 Sum_probs=91.8
Q ss_pred ccccccchHhHHHH---------------------hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeeccccc
Q psy11961 5 SAGTRRMNIDVIKL---------------------IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYH 63 (109)
Q Consensus 5 ~~~~~Rl~~d~~~l---------------------~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~H 63 (109)
.++.+||++|+++| ++|+++|.||++||||||.|+++|.||++||++||+|+|.|++||
T Consensus 24 ~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~H 103 (160)
T 2a4d_A 24 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINM 103 (160)
T ss_dssp HHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred chHHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCcee
Confidence 45678888888743 467888999999999999999999999999999999999999999
Q ss_pred CceeCCCCeEEccCCC--CCCCCCCCHHHHHHHHHHhhc-CCC-CCCC
Q psy11961 64 PNICEGSGTVCLNVIN--QAWTPLYDLSNIFECFLPQLL-TPI-RTPL 107 (109)
Q Consensus 64 Pnv~~~~G~icl~~l~--~~W~p~~~i~~il~~i~~ll~-~P~-~~~l 107 (109)
|||+..+|+||+++|. ++|+|+++|++||.+|+++|. .|+ ++||
T Consensus 104 PNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~ 151 (160)
T 2a4d_A 104 NGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQ 151 (160)
T ss_dssp TTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCC
T ss_pred CCEECCCCEEehhhcCCccCCCccCcHHHHHHHHHHHHccCCCCCCCC
Confidence 9999559999999997 899999999999999999996 464 4454
No 41
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=3.6e-35 Score=201.58 Aligned_cols=101 Identities=19% Similarity=0.376 Sum_probs=90.5
Q ss_pred ccccccchHhHHHH---------------------hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeeccccc
Q psy11961 5 SAGTRRMNIDVIKL---------------------IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYH 63 (109)
Q Consensus 5 ~~~~~Rl~~d~~~l---------------------~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~H 63 (109)
.++.+||++|+++| ++|+++|.||++||||||.|+++|.||++||++||+|+|.|++||
T Consensus 20 ~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~H 99 (156)
T 2q0v_A 20 VPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEM 99 (156)
T ss_dssp CCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred chHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEccccc
Confidence 45678888888754 457778999999999999999999999999999999999999999
Q ss_pred CceeCCCCeE---EccCCCCCCCCCCCHHHHHHHHHHhhcCCC-CCCC
Q psy11961 64 PNICEGSGTV---CLNVINQAWTPLYDLSNIFECFLPQLLTPI-RTPL 107 (109)
Q Consensus 64 Pnv~~~~G~i---cl~~l~~~W~p~~~i~~il~~i~~ll~~P~-~~~l 107 (109)
|||+ .+|+| |+++|. +|+|+++|++||.+|+++|.+|+ ++++
T Consensus 100 PNV~-~~G~icisCL~iL~-~WsP~~ti~~vL~sI~~ll~~Pn~~~p~ 145 (156)
T 2q0v_A 100 SCVD-NCGRVIKNNLHILK-NWNRNYTIETILISLRQEMLSSANKRLP 145 (156)
T ss_dssp TTBC-TTSBBCGGGSHHHH-TCCTTCCHHHHHHHHHHHTTSTTTTTCC
T ss_pred CCCc-cCCeEehhhccccc-CCCCcCcHHHHHHHHHHHHhCCCCCCcC
Confidence 9999 58999 888886 59999999999999999999995 4444
No 42
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=5.7e-35 Score=199.87 Aligned_cols=99 Identities=32% Similarity=0.766 Sum_probs=89.3
Q ss_pred ccccchHhHHHH------------------hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCceeC
Q psy11961 7 GTRRMNIDVIKL------------------IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICE 68 (109)
Q Consensus 7 ~~~Rl~~d~~~l------------------~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~~ 68 (109)
+.+||++|+++| .+|++.|. |++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 3 a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~- 80 (154)
T 1c4z_D 3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNID- 80 (154)
T ss_dssp -CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBC-
T ss_pred HHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCC-
Confidence 568888888754 55777777 9999999999999999999999999999999999999999
Q ss_pred CCCeEEccCCC-CCCCCCCCHHHHHHHHHHhhcCCC-CCCC
Q psy11961 69 GSGTVCLNVIN-QAWTPLYDLSNIFECFLPQLLTPI-RTPL 107 (109)
Q Consensus 69 ~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~P~-~~~l 107 (109)
.+|.||+++|. ++|+|+++|.+||.+|+++|.+|+ ++||
T Consensus 81 ~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~ 121 (154)
T 1c4z_D 81 EKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPL 121 (154)
T ss_dssp TTCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCS
T ss_pred CCCEEECCCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCchh
Confidence 69999999996 899999999999999999999994 5555
No 43
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=1e-34 Score=198.75 Aligned_cols=100 Identities=32% Similarity=0.673 Sum_probs=91.7
Q ss_pred cccccchHhHHHH------------------hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCcee
Q psy11961 6 AGTRRMNIDVIKL------------------IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNIC 67 (109)
Q Consensus 6 ~~~~Rl~~d~~~l------------------~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~ 67 (109)
.+.+||++|+++| .+|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 4 ~~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~ 82 (155)
T 1wzv_A 4 MASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVD 82 (155)
T ss_dssp -CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCC
Confidence 3678999999865 45778899 9999999999999999999999999999999999999999
Q ss_pred CCCCeEEccCC-CCCCCCCCCHHHHHHHHHHhhcCCC-CCCC
Q psy11961 68 EGSGTVCLNVI-NQAWTPLYDLSNIFECFLPQLLTPI-RTPL 107 (109)
Q Consensus 68 ~~~G~icl~~l-~~~W~p~~~i~~il~~i~~ll~~P~-~~~l 107 (109)
.+|.||+++| .++|+|+++|.+||.+|+++|.+|+ ++||
T Consensus 83 -~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~ 123 (155)
T 1wzv_A 83 -ENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPL 123 (155)
T ss_dssp -TTCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCS
T ss_pred -CCCeEeecCCCccCCCCCCcHHHHHHHHHHHHhCCCCCchH
Confidence 5999999999 8999999999999999999999994 5555
No 44
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=1.9e-34 Score=199.53 Aligned_cols=102 Identities=24% Similarity=0.527 Sum_probs=91.7
Q ss_pred CccccccchHhHHHHhh------------------CCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCc
Q psy11961 4 PSAGTRRMNIDVIKLIE------------------SKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPN 65 (109)
Q Consensus 4 ~~~~~~Rl~~d~~~l~~------------------w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPn 65 (109)
.+.+.|||++|+++|++ |.+.| ||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 12 ~s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 90 (167)
T 3fn1_B 12 VSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPN 90 (167)
T ss_dssp CCHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCCSS
T ss_pred hhHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcccCC
Confidence 35678999999997754 55555 999999999999999999999999999999999999999
Q ss_pred eeCCCCeEEccCCCC------CCCCCCCHHHHHHHHHHhhcC-CC-CCCC
Q psy11961 66 ICEGSGTVCLNVINQ------AWTPLYDLSNIFECFLPQLLT-PI-RTPL 107 (109)
Q Consensus 66 v~~~~G~icl~~l~~------~W~p~~~i~~il~~i~~ll~~-P~-~~~l 107 (109)
|+ .+|+||+++|.. +|+|+++|.+||.+|+++|.+ |+ ++||
T Consensus 91 v~-~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~ 139 (167)
T 3fn1_B 91 IT-ETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPL 139 (167)
T ss_dssp BC-TTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCS
T ss_pred CC-CCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcch
Confidence 99 699999999975 799999999999999999999 54 5565
No 45
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=3.7e-35 Score=203.99 Aligned_cols=103 Identities=18% Similarity=0.369 Sum_probs=92.1
Q ss_pred ccccccchHhHHH---------------------HhhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeeccccc
Q psy11961 5 SAGTRRMNIDVIK---------------------LIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYH 63 (109)
Q Consensus 5 ~~~~~Rl~~d~~~---------------------l~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~H 63 (109)
.++.+||++|+++ |++|+++|.||++||||||.|+++|.||++||++||+|+|.|++||
T Consensus 34 ~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~H 113 (170)
T 2hlw_A 34 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINM 113 (170)
T ss_dssp CCHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCC
T ss_pred CHHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEeccccc
Confidence 4577899988884 4468888999999999999999999999999999999999999999
Q ss_pred CceeCCCCeEEccCCC--CCCCCCCCHHHHHHHHHHhhcC-CC-CCCC
Q psy11961 64 PNICEGSGTVCLNVIN--QAWTPLYDLSNIFECFLPQLLT-PI-RTPL 107 (109)
Q Consensus 64 Pnv~~~~G~icl~~l~--~~W~p~~~i~~il~~i~~ll~~-P~-~~~l 107 (109)
|||+..+|.||+++|. ++|+|+++|++||.+|+++|.+ |+ ++|+
T Consensus 114 PNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~ 161 (170)
T 2hlw_A 114 NGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQ 161 (170)
T ss_dssp SSBCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHHHHHHHSTTTSSSCC
T ss_pred CCEeCCCCEEEhhhcCCCCCCCccCcHHHHHHHHHHHHccCCCCCCCC
Confidence 9998559999999997 8999999999999999999986 54 4444
No 46
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=1.9e-33 Score=198.27 Aligned_cols=101 Identities=32% Similarity=0.567 Sum_probs=92.0
Q ss_pred ccccccchHhHHH-------------------Hh---hCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccc
Q psy11961 5 SAGTRRMNIDVIK-------------------LI---ESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIY 62 (109)
Q Consensus 5 ~~~~~Rl~~d~~~-------------------l~---~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~ 62 (109)
+++.+||++|+++ +. +|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus 28 s~a~~RL~kEl~~l~~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 106 (190)
T 3o2u_A 28 SAARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIF 106 (190)
T ss_dssp CHHHHHHHHHHHTCCCCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEECSCCC
T ss_pred cHHHHHHHHHHHhccCCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEEecCcc
Confidence 5677888888775 35 7888876 78899999999999999999999999999999999
Q ss_pred cCceeCCCCeEEccCCCCCCCCCCCHHHHHHHHHHhhcCCC-CCCC
Q psy11961 63 HPNICEGSGTVCLNVINQAWTPLYDLSNIFECFLPQLLTPI-RTPL 107 (109)
Q Consensus 63 HPnv~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~P~-~~~l 107 (109)
||||+ .+|.||+++|.++|+|+++|.+||.+|+++|.+|+ ++||
T Consensus 107 HPnV~-~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~pl 151 (190)
T 3o2u_A 107 HPNID-LKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPL 151 (190)
T ss_dssp CTTBC-TTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCS
T ss_pred cCCCC-CCCeEechhccCCCCCCCCHHHHHHHHHHHHhCCCCCcch
Confidence 99999 69999999999999999999999999999999995 5565
No 47
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=99.98 E-value=5.7e-33 Score=214.00 Aligned_cols=102 Identities=32% Similarity=0.802 Sum_probs=94.9
Q ss_pred ccccccchHhHHHH-----------------hhCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCcee
Q psy11961 5 SAGTRRMNIDVIKL-----------------IESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNIC 67 (109)
Q Consensus 5 ~~~~~Rl~~d~~~l-----------------~~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~ 67 (109)
+.+.|||++|+++| .+|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 2 s~a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 81 (399)
T 4ddg_A 2 AMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 81 (399)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccC
Confidence 46789999999976 4488889999999999999999999999999999999999999999999
Q ss_pred CCCCeEEccCCCCCCCCCCCHHHHHHHHHHhhcCCC-CCCC
Q psy11961 68 EGSGTVCLNVINQAWTPLYDLSNIFECFLPQLLTPI-RTPL 107 (109)
Q Consensus 68 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~P~-~~~l 107 (109)
.+|.||+++|.++|+|+++|.+||.+|+++|.+|+ ++||
T Consensus 82 -~~G~iCl~il~~~W~p~~~i~~vL~~i~~ll~~pnp~~p~ 121 (399)
T 4ddg_A 82 -SNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL 121 (399)
T ss_dssp -TTCBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCS
T ss_pred -CCCeEeCcccccCCCccccHHHHHHHHHHHHcCCCCCchh
Confidence 69999999999999999999999999999999995 5555
No 48
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=99.98 E-value=4.9e-33 Score=192.60 Aligned_cols=104 Identities=23% Similarity=0.514 Sum_probs=90.7
Q ss_pred CCCCccccccchHhHHHHhh-----------------------------CCceeeCCCCCCCC--CCEEEEEEEcCCCCC
Q psy11961 1 MSSPSAGTRRMNIDVIKLIE-----------------------------SKHELFGPRDTPYE--GGVWKVRVHLPENYP 49 (109)
Q Consensus 1 ms~~~~~~~Rl~~d~~~l~~-----------------------------w~~~i~Gp~~tpy~--gg~~~~~i~f~~~yP 49 (109)
|| +.+.|||++|+++|++ |+++|.||++|||+ ||.|+++|.||++||
T Consensus 5 Ms--~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP 82 (167)
T 4ds2_A 5 MK--NISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYP 82 (167)
T ss_dssp CC--CCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTT
T ss_pred cc--HHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCC
Confidence 66 6789999999886643 66669999999999 999999999999999
Q ss_pred CCCCeeeeecccccCceeCCCCeEEccCCCCCCCCCCCHHHHH-HHHHHhhcC--CC-CCCC
Q psy11961 50 FKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTPLYDLSNIF-ECFLPQLLT--PI-RTPL 107 (109)
Q Consensus 50 ~~pP~v~f~t~i~HPnv~~~~G~icl~~l~~~W~p~~~i~~il-~~i~~ll~~--P~-~~~l 107 (109)
++||+|+|.|++|||||+ .+|.||+++|.++|+|++++.+++ ..|++++.. |+ ++||
T Consensus 83 ~~pP~v~f~t~i~HPnv~-~~G~iCl~il~~~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~ 143 (167)
T 4ds2_A 83 HEPPTVRFVTPVYSPLVT-GEGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDV 143 (167)
T ss_dssp TSCCEEEESSCCCCSSCC-TTSCCCTHHHHTTCCTTSCHHHHHHHHHHHHHTSTTSCCSCCC
T ss_pred CCCCEEEEeCCcccccCC-CCCEEEcccCcCCCCCCCChHHHHHHHHHHHHhcCCCCCcchH
Confidence 999999999999999999 799999999999999999999975 457777765 53 4554
No 49
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=99.97 E-value=2.6e-32 Score=205.11 Aligned_cols=102 Identities=28% Similarity=0.643 Sum_probs=91.9
Q ss_pred ccccccchHhHHHHh---------------------hCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecc---
Q psy11961 5 SAGTRRMNIDVIKLI---------------------ESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNK--- 60 (109)
Q Consensus 5 ~~~~~Rl~~d~~~l~---------------------~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~--- 60 (109)
+.+.+||++|+++|. .|++.|.||++|||+||.|+|+|.||++||++||+|+|.|+
T Consensus 75 ~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~g~ 154 (323)
T 3ceg_A 75 AARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGH 154 (323)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCSTTT
T ss_pred HHHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccCCC
Confidence 578899999998764 46777999999999999999999999999999999999998
Q ss_pred --cccCceeCCCCeEEccCCC-------CCCCCCC-CHHHHHHHHHHhhc--CC-CCCCC
Q psy11961 61 --IYHPNICEGSGTVCLNVIN-------QAWTPLY-DLSNIFECFLPQLL--TP-IRTPL 107 (109)
Q Consensus 61 --i~HPnv~~~~G~icl~~l~-------~~W~p~~-~i~~il~~i~~ll~--~P-~~~~l 107 (109)
+|||||+ .+|+||+++|. ++|+|++ +|.+||.+|++||. +| .++|+
T Consensus 155 ~~ifHPNV~-~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~ 213 (323)
T 3ceg_A 155 SVRFNPNLY-NDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPG 213 (323)
T ss_dssp TCCCBTTBC-TTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTT
T ss_pred cccccCCCC-cCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCcc
Confidence 9999999 69999999997 6999999 89999999999996 55 24554
No 50
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=99.97 E-value=4.9e-32 Score=190.66 Aligned_cols=97 Identities=27% Similarity=0.580 Sum_probs=83.1
Q ss_pred ccccccchHhHHHHh-----------------hCCceeeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccCcee
Q psy11961 5 SAGTRRMNIDVIKLI-----------------ESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNIC 67 (109)
Q Consensus 5 ~~~~~Rl~~d~~~l~-----------------~w~~~i~Gp~~tpy~gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~ 67 (109)
+++.+||++|+++|. +|+++|.||++|||+||.|+++|.||++||++||+|+|.|+ |||++
T Consensus 13 ~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~~~~ 90 (187)
T 2f4w_A 13 TTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFK 90 (187)
T ss_dssp -CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CSSBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--Cceec
Confidence 456789999999764 48888999999999999999999999999999999999998 99999
Q ss_pred CCCCeEEccCC---CCCCCCCCCHHHHHHHHHHhhcCCCC
Q psy11961 68 EGSGTVCLNVI---NQAWTPLYDLSNIFECFLPQLLTPIR 104 (109)
Q Consensus 68 ~~~G~icl~~l---~~~W~p~~~i~~il~~i~~ll~~P~~ 104 (109)
.+|+||+++| .+.|+|+++|.+||.+|+++|.+|+.
T Consensus 91 -~~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll~~p~p 129 (187)
T 2f4w_A 91 -CNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 129 (187)
T ss_dssp -TTSCBC----------CCTTCCHHHHHHHHHHHHHSCCC
T ss_pred -cCCeEeeeccccCccCCCCcCcHHHHHHHHHHHhcCCCC
Confidence 6999999999 58999999999999999999999964
No 51
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=99.97 E-value=1.9e-32 Score=192.71 Aligned_cols=98 Identities=15% Similarity=0.394 Sum_probs=90.0
Q ss_pred ccccccchHhHHHHhh--------------------CCceeeCC-CCCCCCC-----------CEEEEEEEcCCCCCCCC
Q psy11961 5 SAGTRRMNIDVIKLIE--------------------SKHELFGP-RDTPYEG-----------GVWKVRVHLPENYPFKS 52 (109)
Q Consensus 5 ~~~~~Rl~~d~~~l~~--------------------w~~~i~Gp-~~tpy~g-----------g~~~~~i~f~~~yP~~p 52 (109)
+.+.+||++|+++|++ |.+.|.|| ++|||+| |.|+++|.||++||++|
T Consensus 26 ~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~~P 105 (186)
T 1zuo_A 26 VQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDP 105 (186)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSC
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCCCC
Confidence 5678999999987643 66669998 9999998 89999999999999999
Q ss_pred CeeeeecccccC-ceeCCCCeEEccCCC-CCCCCCCCHHHHHHHHHHhhcCCC
Q psy11961 53 PSIGFMNKIYHP-NICEGSGTVCLNVIN-QAWTPLYDLSNIFECFLPQLLTPI 103 (109)
Q Consensus 53 P~v~f~t~i~HP-nv~~~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~P~ 103 (109)
|+|+|.+++||| ||+ .+|.||+++|. +.|+|+++|++||.+|+++|.+|+
T Consensus 106 P~V~f~tpi~hPnnV~-~~G~ICL~iL~~~~WsP~~ti~~VL~sI~slL~~p~ 157 (186)
T 1zuo_A 106 PFVRVVLPVLSGGYVL-GGGALCMELLTKQGWSSAYSIESVIMQINATLVKGK 157 (186)
T ss_dssp CEEEEEESCEESTTBC-GGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTT
T ss_pred CeEEEeCCccCCCccC-CCCcEEeccCCCCCCCCcCcHHHHHHHHHHHHcCCC
Confidence 999999999999 699 69999999996 799999999999999999999984
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.92 E-value=3.3e-26 Score=157.44 Aligned_cols=85 Identities=16% Similarity=0.298 Sum_probs=77.1
Q ss_pred cccchHhHHHH-----------hhCCceeeCCCCCCCCCC----------EEEEEEEcCCCCCCCCCeeeeecc-cccCc
Q psy11961 8 TRRMNIDVIKL-----------IESKHELFGPRDTPYEGG----------VWKVRVHLPENYPFKSPSIGFMNK-IYHPN 65 (109)
Q Consensus 8 ~~Rl~~d~~~l-----------~~w~~~i~Gp~~tpy~gg----------~~~~~i~f~~~yP~~pP~v~f~t~-i~HPn 65 (109)
.+||++|.+.| +.|.+.+.||+||+|+|| .|+++|.||++||.+||+|+|.+. ++|||
T Consensus 34 ~~RL~eE~k~L~k~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~~~~~~hpn 113 (172)
T 2z6o_A 34 VQRLKEEYQSLIRYVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAK 113 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTTCSS
T ss_pred HHHHHHHHHHHHHHhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeCCCCCCCCC
Confidence 78999998854 569999999999999999 999999999999999999999998 99999
Q ss_pred eeCCCCeEEccCC-CC---CCCCCCCHHHHHH
Q psy11961 66 ICEGSGTVCLNVI-NQ---AWTPLYDLSNIFE 93 (109)
Q Consensus 66 v~~~~G~icl~~l-~~---~W~p~~~i~~il~ 93 (109)
|| .+|+||++++ .. .|+|.++|.++|.
T Consensus 114 mY-~~G~ICLdIL~kp~Ws~~~P~~~IahiL~ 144 (172)
T 2z6o_A 114 MY-RGGKICLTDHFKPLWARNVPKFGLAHLMA 144 (172)
T ss_dssp BC-TTSBBCCCTTHHHHHHHHTTSCCHHHHHH
T ss_pred CC-CCCcEechhhccccccccCCccCHHHHHh
Confidence 99 6999999999 43 4559999999984
No 53
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.76 E-value=4.2e-19 Score=122.20 Aligned_cols=79 Identities=24% Similarity=0.460 Sum_probs=71.5
Q ss_pred eeCCCCCCCCCCE---EEEEEEcCCCCCCCCCeeeeecc----------cc-cCceeCCCCeEEccCCCCCCCC-CCCHH
Q psy11961 25 LFGPRDTPYEGGV---WKVRVHLPENYPFKSPSIGFMNK----------IY-HPNICEGSGTVCLNVINQAWTP-LYDLS 89 (109)
Q Consensus 25 i~Gp~~tpy~gg~---~~~~i~f~~~yP~~pP~v~f~t~----------i~-HPnv~~~~G~icl~~l~~~W~p-~~~i~ 89 (109)
+.|.-.++|+||. |.+.|-||.+||++||.|.|..+ ++ ||||| .+|+||++.|. +|+| +.++.
T Consensus 67 l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~~~~~~I~~hpnVD-~~G~I~lpyL~-~W~p~~s~L~ 144 (162)
T 3r3q_A 67 IYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYID-SNGWIALPILH-AWDPAAMNLI 144 (162)
T ss_dssp EEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTTTSCTTSTHHHHBC-TTSBBCCGGGG-SCCGGGCCHH
T ss_pred EECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCccccccccccCCCCCCC-CCCcEeCcccc-cCCCCcCcHH
Confidence 8888889999999 88999999999999999988541 67 99999 79999999995 6999 68999
Q ss_pred HHHHHHHHhhcCCCCC
Q psy11961 90 NIFECFLPQLLTPIRT 105 (109)
Q Consensus 90 ~il~~i~~ll~~P~~~ 105 (109)
+++.+|+++|.+|+.+
T Consensus 145 ~ll~~l~~lf~ep~~d 160 (162)
T 3r3q_A 145 MVVQELMSLLHEPPQD 160 (162)
T ss_dssp HHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHhcCCCCC
Confidence 9999999999999765
No 54
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.70 E-value=2.1e-18 Score=116.74 Aligned_cols=84 Identities=20% Similarity=0.428 Sum_probs=69.3
Q ss_pred cccchHhHHHH-----------hhCCceeeCCCCCCCCCC----------EEEEEEEcCCCCCCCCCeeeeecc-cccCc
Q psy11961 8 TRRMNIDVIKL-----------IESKHELFGPRDTPYEGG----------VWKVRVHLPENYPFKSPSIGFMNK-IYHPN 65 (109)
Q Consensus 8 ~~Rl~~d~~~l-----------~~w~~~i~Gp~~tpy~gg----------~~~~~i~f~~~yP~~pP~v~f~t~-i~HPn 65 (109)
..||..|...| ..|.....||+||+|+|+ .|+++++||.+||..||+|+|.+. .+|||
T Consensus 36 ~~RlkeEy~alI~yv~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp~ldgkt~k 115 (168)
T 3kpa_A 36 TARLKEEYASLITYVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPELEGKTVK 115 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTTCSS
T ss_pred HHHHHHHHHHHHHHHHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeecccccCcCcc
Confidence 45888888876 348888999999999999 999999999999999999999995 89999
Q ss_pred eeCCCCeEEccCC-CCCC---CCCCCHHHHH
Q psy11961 66 ICEGSGTVCLNVI-NQAW---TPLYDLSNIF 92 (109)
Q Consensus 66 v~~~~G~icl~~l-~~~W---~p~~~i~~il 92 (109)
+| .+|+||++++ ..-| .|.++|...+
T Consensus 116 mY-r~GkICLdIhwkPlW~~n~P~fGiahal 145 (168)
T 3kpa_A 116 MY-RGGKICMTTHFFPLWARNVPYFGISHVL 145 (168)
T ss_dssp EE-TTTEECCCTTHHHHHHHTTTTCCHHHHH
T ss_pred cc-CCCcEEeccccchhhHhcCCchhHHHHH
Confidence 99 6999999986 1222 2445665554
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.49 E-value=1.7e-14 Score=97.68 Aligned_cols=68 Identities=19% Similarity=0.511 Sum_probs=60.1
Q ss_pred CCCCCCEEEE--EEEcCCCCCCCCCeeeeecc------cccCceeCCCCeEEccCCCCCCCC-CCCHHHHHHHHHHhhcC
Q psy11961 31 TPYEGGVWKV--RVHLPENYPFKSPSIGFMNK------IYHPNICEGSGTVCLNVINQAWTP-LYDLSNIFECFLPQLLT 101 (109)
Q Consensus 31 tpy~gg~~~~--~i~f~~~yP~~pP~v~f~t~------i~HPnv~~~~G~icl~~l~~~W~p-~~~i~~il~~i~~ll~~ 101 (109)
.+|+|+.|.+ .|-||.+||++||.| |.++ ..|+||| .+|+||++.|.+ |++ +.+|.+++..+++.|.+
T Consensus 62 v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd-~~G~i~lpyL~~-W~~~~snL~~ll~~l~~~F~~ 138 (146)
T 3obq_A 62 VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVD-ANGKIYLPYLHE-WKHPQSDLLGLIQVMIVVFGD 138 (146)
T ss_dssp EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBC-TTCBBCCHHHHT-CCTTTCCHHHHHHHHHHHHHH
T ss_pred eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCC-CCCCEecccccc-cCCCCCCHHHHHHHHHHHHhh
Confidence 5899999995 899999999999999 6655 4899999 799999999965 987 78999999999998864
No 56
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=94.55 E-value=0.13 Score=35.64 Aligned_cols=51 Identities=27% Similarity=0.468 Sum_probs=39.8
Q ss_pred CCEEEEEEEcCCCCCCCCCeeeeecccccCceeCCCCeEEccCCCCCCCCCCCHHHHHHHHHHhhc
Q psy11961 35 GGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTPLYDLSNIFECFLPQLL 100 (109)
Q Consensus 35 gg~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~ 100 (109)
|....++|.++.+||.++|.+...-|. |. .-.|++..++.+++.+.+..+.
T Consensus 37 gR~H~l~v~l~~~yp~~~P~~~~DlP~--~~-------------~~~w~~~ssL~~v~~qF~~~Le 87 (186)
T 3zqs_A 37 GREHLITLKLKAKYPAESPDYFVDFPV--PF-------------CASWTPQSSLISIYSQFLAAIE 87 (186)
T ss_dssp SCEEEEEEECCTTTTTSCCEEECCCSS--CC-------------CCCCCTTCCHHHHHHHHHHHHH
T ss_pred CCeEEEEEEECCCCCCCCCeeEEcCCC--Cc-------------ccccCCCccHHHHHHHHHHHHH
Confidence 677889999999999999987555432 11 1269999999999998887764
No 57
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.63 E-value=0.064 Score=34.18 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=21.6
Q ss_pred CCEEEEEEEcCCCCCCCCCeeeeec
Q psy11961 35 GGVWKVRVHLPENYPFKSPSIGFMN 59 (109)
Q Consensus 35 gg~~~~~i~f~~~yP~~pP~v~f~t 59 (109)
.-.+.+.|.+|++||..+|.|...+
T Consensus 54 ~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 54 TVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp CCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred ceeEEEEEEeCCCCCCCCceEEEEc
Confidence 3468899999999999999998765
No 58
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=92.71 E-value=0.11 Score=33.55 Aligned_cols=24 Identities=25% Similarity=0.580 Sum_probs=21.0
Q ss_pred CEEEEEEEcCCCCCCCCCeeeeec
Q psy11961 36 GVWKVRVHLPENYPFKSPSIGFMN 59 (109)
Q Consensus 36 g~~~~~i~f~~~yP~~pP~v~f~t 59 (109)
-.+.+.|.+|++||..+|.|...+
T Consensus 62 ~~~~L~~~~p~~YP~~~P~i~l~~ 85 (138)
T 2yz0_A 62 SSITLHFAMTPMYPYTAPEIEFKN 85 (138)
T ss_dssp CEEEEEEECCSSTTSSCCEEEEEC
T ss_pred eEEEEEEECCCCCCCCCCeEEEec
Confidence 467889999999999999998765
No 59
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=92.67 E-value=0.1 Score=33.14 Aligned_cols=64 Identities=19% Similarity=0.230 Sum_probs=39.4
Q ss_pred CEEEEEEEcCCCCCCCCCeeeeecccccCceeCC-CCeEEccCCCCCC--CCC-CCHHHHHHHHHHhhcCCC
Q psy11961 36 GVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEG-SGTVCLNVINQAW--TPL-YDLSNIFECFLPQLLTPI 103 (109)
Q Consensus 36 g~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~~~-~G~icl~~l~~~W--~p~-~~i~~il~~i~~ll~~P~ 103 (109)
-.+.+.|.+|++||..+|.|...+.. ++... -..+| ..|.+.| ..+ --|.+++..+|..|.+-+
T Consensus 59 ~~~~L~~~~p~~YP~~~P~i~~~~~~---~L~~~~~~~L~-~~L~~~~~e~~G~~mif~lv~~lqe~l~~~n 126 (128)
T 2day_A 59 VCFTLVLQVPAEYPHEVPQISIRNPR---GLSDEQIHTIL-QVLGHVAKAGLGTAMLYELIEKGKEILSGPS 126 (128)
T ss_dssp CEEEEEEEECSSTTSSCCEEEEEEEE---SSCHHHHHHHH-HHHHHHHHHTTTSCCHHHHHHHHHHHHCCCC
T ss_pred eeEEEEEEcCCCCCCCCCCeEEEcCC---CCCHHHHHHHH-HHHHHHHHHhCCCEEhHHHHHHHHHHHHhcc
Confidence 36788999999999999999877631 22200 00111 1222333 223 458888888888887643
No 60
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=91.66 E-value=0.11 Score=33.42 Aligned_cols=63 Identities=16% Similarity=0.132 Sum_probs=36.0
Q ss_pred CEEEEEEEcCCCCCCCCCeeeeecccccCceeCCCCeEEccCCCCCCC---CCCCHHHHHHHHHHhhcC
Q psy11961 36 GVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWT---PLYDLSNIFECFLPQLLT 101 (109)
Q Consensus 36 g~~~~~i~f~~~yP~~pP~v~f~t~i~HPnv~~~~G~icl~~l~~~W~---p~~~i~~il~~i~~ll~~ 101 (109)
-.+.+.|.||++||..+|.|..... .++....-......|.+.|. -.--|.+++..+|..|.+
T Consensus 63 ~~~~L~v~~p~~YP~~~P~i~l~~~---~~L~~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~~ 128 (137)
T 1ukx_A 63 VQVELRVKCPPTYPDVVPEIDLKNA---KGLSNESVNLLKSHLEELAKKQCGEVMIFELAHHVQSFLSE 128 (137)
T ss_dssp CEEEEEECCCTTTTSSCCCCEEEEE---ESSSSSHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHH
T ss_pred eEEEEEEECCCCCCCCCCcEEEecC---CCCCHHHHHHHHHHHHHHHHHhCCCEEhHHHHHHHHHHHHh
Confidence 4688999999999999999987532 12221000011111222332 223577777777776643
No 61
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.51 E-value=0.16 Score=32.38 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=20.6
Q ss_pred CEEEEEEEcCCCCCCCCCeeeeec
Q psy11961 36 GVWKVRVHLPENYPFKSPSIGFMN 59 (109)
Q Consensus 36 g~~~~~i~f~~~yP~~pP~v~f~t 59 (109)
-.+.+.|.+|.+||..+|.|...+
T Consensus 56 ~~~~L~~~~p~~YP~~~P~i~l~~ 79 (128)
T 2ebk_A 56 IPLELVFHLPVNYPSCLPGISINS 79 (128)
T ss_dssp CEEEEEEEECSSTTSSCCCCCCCC
T ss_pred eEEEEEEECCCCCCCCCCeEEEEh
Confidence 368899999999999999997664
No 62
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=90.20 E-value=0.23 Score=32.64 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.0
Q ss_pred EEEEEEEcCCCCCCCCCeeeeecc
Q psy11961 37 VWKVRVHLPENYPFKSPSIGFMNK 60 (109)
Q Consensus 37 ~~~~~i~f~~~yP~~pP~v~f~t~ 60 (109)
.+.+.|.+|.+||..+|.|...+.
T Consensus 74 ~l~L~v~lP~~YP~~~P~i~l~~~ 97 (152)
T 2dax_A 74 MFSLACILPFKYPAVLPEITVRSV 97 (152)
T ss_dssp EEEEEEEECSSTTSSCCCCEEECT
T ss_pred eEEEEEECCCCCCCCCCeEEEEcc
Confidence 588899999999999999987763
No 63
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=89.36 E-value=0.37 Score=31.86 Aligned_cols=24 Identities=17% Similarity=0.337 Sum_probs=21.3
Q ss_pred EEEEEEEcCCCCCCCCCeeeeecc
Q psy11961 37 VWKVRVHLPENYPFKSPSIGFMNK 60 (109)
Q Consensus 37 ~~~~~i~f~~~yP~~pP~v~f~t~ 60 (109)
.+.+.|.+|.+||..+|.|...+.
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~l~~~ 99 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLFGRSS 99 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEEEECS
T ss_pred eEEEEEEcCCCCCCCCCcEEEEeC
Confidence 788999999999999999987663
No 64
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=55.27 E-value=11 Score=26.09 Aligned_cols=25 Identities=24% Similarity=0.559 Sum_probs=22.4
Q ss_pred CCCEEEEEEEcCCCCCC-----CCCeeeee
Q psy11961 34 EGGVWKVRVHLPENYPF-----KSPSIGFM 58 (109)
Q Consensus 34 ~gg~~~~~i~f~~~yP~-----~pP~v~f~ 58 (109)
+.|.|.|+-.+|--||. +||.|+|.
T Consensus 109 ~~G~y~F~TI~Pg~yp~~~G~~R~~HIH~~ 138 (209)
T 2bum_A 109 GTGFWSFNTIKPGAVPGRKGSTQAPHISLI 138 (209)
T ss_dssp TTCCEEEEEECCCCCBCSTTCBCCCCEEEE
T ss_pred CCcEEEEEEEccCcccCCCCCccCcEEEEE
Confidence 47999999999999998 89999887
No 65
>2bum_B Protocatechuate 3,4-dioxygenase beta chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_B 1eoa_B 1eob_B* 1eoc_B* 1eo9_B 2buq_B 2bur_B* 2bux_B 2buy_B 2buz_B* 2bv0_B* 2buu_B* 2but_B* 2buv_B* 2buw_B*
Probab=38.14 E-value=17 Score=25.76 Aligned_cols=26 Identities=27% Similarity=0.575 Sum_probs=22.5
Q ss_pred CCCEEEEEEEcCCCCC-------CCCCeeeeec
Q psy11961 34 EGGVWKVRVHLPENYP-------FKSPSIGFMN 59 (109)
Q Consensus 34 ~gg~~~~~i~f~~~yP-------~~pP~v~f~t 59 (109)
+.|.|.|+-.+|--|| .+||.|.|.-
T Consensus 134 ~~G~y~F~TI~Pg~Yp~~~~~~~~RpaHIH~~V 166 (241)
T 2bum_B 134 DNGYYVFRTIKPGPYPWRNRINEWRPAHIHFSL 166 (241)
T ss_dssp TTSEEEEEEECCCCEEESSSTTEEECSEEEEEE
T ss_pred CCceEEEEEecCCccccCCCCCCCcCceEEEEE
Confidence 4799999999999998 4899998873
No 66
>1tmx_A Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: HGX; 1.75A {Pimelobacter simplex}
Probab=36.58 E-value=19 Score=26.34 Aligned_cols=25 Identities=24% Similarity=0.561 Sum_probs=21.8
Q ss_pred CCCEEEEEEEcCCCCC------------------CCCCeeeee
Q psy11961 34 EGGVWKVRVHLPENYP------------------FKSPSIGFM 58 (109)
Q Consensus 34 ~gg~~~~~i~f~~~yP------------------~~pP~v~f~ 58 (109)
+.|.|.|+-.+|.-|| .+||.|.|.
T Consensus 183 ~~G~y~F~TI~Pg~Yp~p~dGp~G~ll~~~grh~~RpaHIHf~ 225 (293)
T 1tmx_A 183 PDGGYAFWAITPTPYPIPHDGPVGRMLAATGRSPMRASHLHFM 225 (293)
T ss_dssp TTSEEEEEEECCCCEECCCSSHHHHHHHHTTCCCEECCEEEEE
T ss_pred CCceEEEEEECCCcccCCCCCchHHHHHhcccCCCCCceEEEE
Confidence 5899999999999998 468999887
No 67
>2azq_A Catechol 1,2-dioxygenase; CTD, lipid, isozyme, intradiol, oxido; HET: PCF; 2.65A {Pseudomonas putida}
Probab=36.31 E-value=19 Score=26.55 Aligned_cols=25 Identities=20% Similarity=0.525 Sum_probs=22.0
Q ss_pred CCCEEEEEEEcCCCCC------------------CCCCeeeee
Q psy11961 34 EGGVWKVRVHLPENYP------------------FKSPSIGFM 58 (109)
Q Consensus 34 ~gg~~~~~i~f~~~yP------------------~~pP~v~f~ 58 (109)
+.|.|.|+-.+|.-|| .+||.|.|.
T Consensus 183 ~~G~y~F~TI~Pg~Y~~p~dGp~g~lL~~~grh~~RpaHIHf~ 225 (311)
T 2azq_A 183 AEGRYRARSIVPSGYGCDPQGPTQECLDLLGRHGQRPAHVHFF 225 (311)
T ss_dssp TTCEEEEEEECCCCEECCTTSHHHHHHHHHTCCCEECCEEEEE
T ss_pred CCceEEEEEEcCCCcCCCCCCcHHHHHHhhhccCCCCceEEEE
Confidence 4799999999999998 569999887
No 68
>2xsu_A Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE; 1.60A {Acinetobacter radioresistens} PDB: 2xsr_A* 2xsv_A*
Probab=36.03 E-value=20 Score=26.52 Aligned_cols=25 Identities=12% Similarity=0.363 Sum_probs=21.8
Q ss_pred CCCEEEEEEEcCCCCC------------------CCCCeeeee
Q psy11961 34 EGGVWKVRVHLPENYP------------------FKSPSIGFM 58 (109)
Q Consensus 34 ~gg~~~~~i~f~~~yP------------------~~pP~v~f~ 58 (109)
+.|.|.|+-.+|.-|| .+||.|.|.
T Consensus 187 ~~G~y~F~TI~Pg~Y~ip~dGp~G~lL~~~grh~~RpaHIH~~ 229 (312)
T 2xsu_A 187 VNGKYVALTTMPVGYGCPPEGTTQALLNKLGRHGNRPSHVHYF 229 (312)
T ss_dssp TTSEEEEEEECCCCEECCTTSHHHHHHHHTTCCCEECCEEEEE
T ss_pred CCceEEEEEECcCcccCCCCCcHHHHHHHhhccCCCCceEEEE
Confidence 5899999999999998 578888887
No 69
>3t63_M 3,4-PCD, protocatechuate 3,4-dioxygenase beta chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 3mi1_M* 3mv4_M* 3mi5_M* 3mfl_M* 3mv6_M* 3t67_M 3pca_M* 3pcb_M* 2pcd_M* 3pce_M* 3pcf_M* 3pcc_M* 3pch_M* 3pci_M* 3pcj_M* 3pck_M* 3pcl_M* 3pcm_M* 3pcn_M* 3pcg_M ...
Probab=35.89 E-value=20 Score=25.45 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=22.4
Q ss_pred CCCEEEEEEEcCCCCCC-------CCCeeeee
Q psy11961 34 EGGVWKVRVHLPENYPF-------KSPSIGFM 58 (109)
Q Consensus 34 ~gg~~~~~i~f~~~yP~-------~pP~v~f~ 58 (109)
+.|.|.|+-.+|--||. +||.|.|.
T Consensus 133 ~~G~y~F~TI~Pg~Yp~p~~~~~~Rp~HIHf~ 164 (238)
T 3t63_M 133 SDGYYSFRTIKPGPAPWRNGPNDWRPAHIYFG 164 (238)
T ss_dssp TTSEEEEEEECCCCEEESSSTTEEECSEEEEE
T ss_pred CCceEEEEEECCcCccCCCCCCCCcCCeEEEE
Confidence 47999999999999986 89999887
No 70
>3n9t_A PNPC; phospholipid binds, N-terminal helix tunnel, oxidoreductase; HET: HGX FLC; 2.00A {Pseudomonas putida}
Probab=34.62 E-value=22 Score=26.03 Aligned_cols=25 Identities=24% Similarity=0.743 Sum_probs=21.7
Q ss_pred CCCEEEEEEEcCCCCC------------------CCCCeeeee
Q psy11961 34 EGGVWKVRVHLPENYP------------------FKSPSIGFM 58 (109)
Q Consensus 34 ~gg~~~~~i~f~~~yP------------------~~pP~v~f~ 58 (109)
+.|.|.|+-.+|.-|| .+||.|.|.
T Consensus 180 ~~G~y~F~TI~Pg~Yp~p~dGp~G~ll~~~grh~~RpaHIHf~ 222 (290)
T 3n9t_A 180 NDGCFAIQTTVPVCYPIPTDGPVGEMLDAANRHAWRPAHLHFM 222 (290)
T ss_dssp TTSEEEEEEECCCCEECCCSSHHHHHHHHHTCCCEECCEEEEE
T ss_pred CCceEEEEEeCCCCcCCCCCCcHHHHHHhccCCCCcCceEEEE
Confidence 4799999999999998 368998887
No 71
>2boy_A 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: BHO LPP; 1.9A {Rhodococcus opacus}
Probab=34.18 E-value=22 Score=25.40 Aligned_cols=25 Identities=20% Similarity=0.623 Sum_probs=21.2
Q ss_pred CCCEEEEEEEcCCCCC------------------CCCCeeeee
Q psy11961 34 EGGVWKVRVHLPENYP------------------FKSPSIGFM 58 (109)
Q Consensus 34 ~gg~~~~~i~f~~~yP------------------~~pP~v~f~ 58 (109)
+.|.|.|+-.+|.-|| .+||.|.|.
T Consensus 153 ~~G~y~F~TI~Pg~Y~~p~dGp~G~ll~~~grh~~RpaHIH~~ 195 (254)
T 2boy_A 153 ENGRFTLRTIVPAPYEIPKNGPTGALLAAAGWHAWRPAHLHWI 195 (254)
T ss_dssp TTSEEEEEEECCCCEECCTTSHHHHHHHHTTCCCEECCEEEEE
T ss_pred CCceEEEEEECCccccCCCCCcHHHHHHhcccccCCCceEEEE
Confidence 3699999999999886 578998887
No 72
>3th1_A Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxygenase family, oxidoreductase, iron bindin; HET: 3PH GOL; 3.40A {Pseudomonas putida}
Probab=34.05 E-value=34 Score=24.56 Aligned_cols=25 Identities=24% Similarity=0.638 Sum_probs=20.4
Q ss_pred CCCEEEEEEEcCCCC------------------CCCCCeeeee
Q psy11961 34 EGGVWKVRVHLPENY------------------PFKSPSIGFM 58 (109)
Q Consensus 34 ~gg~~~~~i~f~~~y------------------P~~pP~v~f~ 58 (109)
+.|.|.|+-.+|.-| |.+|+.|.|.
T Consensus 150 ~~G~y~F~TI~P~~Ypip~dGp~g~ll~~~gr~~~RpaHIHf~ 192 (260)
T 3th1_A 150 SQGNYRVRTTMPVPYQIPYEGPTGRLLGHLGSHTWRPAHVHFK 192 (260)
T ss_dssp TTSEEEEEEECCCCEECCCSSHHHHHHHHTTCCSEECCEEEEE
T ss_pred CCCEEEEEEECCCCCCCCCCCcHHHHHHhcCCCCCCCCeEEEE
Confidence 478999999999666 5678888887
No 73
>3t63_A 3,4-PCD, protocatechuate 3,4-dioxygenase alpha chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 1ykl_A* 1ykm_A* 1ykn_A* 1yko_A* 1ykp_A* 2pcd_A 1ykk_A* 3lmx_A* 3lxv_A* 3mfl_A* 3mi1_A* 3mi5_A* 3lkt_A* 3mv6_A* 3pca_A* 3pcb_A* 3pcc_A* 3pcd_A 3pce_A* 3pcf_A* ...
Probab=33.07 E-value=26 Score=24.10 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.9
Q ss_pred CEEEEEEEcCCCCCCC-----CCeeeee
Q psy11961 36 GVWKVRVHLPENYPFK-----SPSIGFM 58 (109)
Q Consensus 36 g~~~~~i~f~~~yP~~-----pP~v~f~ 58 (109)
|.|.|+-.+|--||.. ||.|.|.
T Consensus 102 G~~~F~TI~Pg~Y~~~~g~~rp~HIH~~ 129 (200)
T 3t63_A 102 GEWTLHTVKPGVVNNAAGVPMAPHINIS 129 (200)
T ss_dssp CSEEEEEECCCCEECTTSCEECSCEEEE
T ss_pred CEEEEEEECCcCcCCCCCCccCCEEEEE
Confidence 9999999999999987 8888777
No 74
>1dmh_A 1,2-CTD, catechol 1,2-dioxygenase; aromatic hydrocarbon degradation, alpha/beta FO metalloenzyme, substrate, oxidoreductase; HET: LIO; 1.70A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1dlq_A* 1dlm_A* 1dlt_A*
Probab=32.93 E-value=23 Score=26.12 Aligned_cols=25 Identities=32% Similarity=0.659 Sum_probs=21.6
Q ss_pred CCCEEEEEEEcCCCCC------------------CCCCeeeee
Q psy11961 34 EGGVWKVRVHLPENYP------------------FKSPSIGFM 58 (109)
Q Consensus 34 ~gg~~~~~i~f~~~yP------------------~~pP~v~f~ 58 (109)
+.|.|.|+-.+|.-|| .+||.|.|.
T Consensus 186 ~~G~y~F~TI~Pg~Yp~p~dgp~g~lL~~~grh~~RpaHIHf~ 228 (311)
T 1dmh_A 186 ENGQYRVRTILPAGYGCPPEGPTQQLLNQLGRHGNRPAHIHYF 228 (311)
T ss_dssp TTSEEEEEEECCCCEECCTTSHHHHHHHHTTCCCEECSEEEEE
T ss_pred CCceEEEEEEcCCcccCCCCCcHHHHHHhcccCCCCCceEEEE
Confidence 3699999999999997 568999887
No 75
>3hhy_A 1,2-CTD, catechol 1,2-dioxygenase; beta-sandwich, aromatic hydrocarbons catabolism, dioxygenase metal-binding, oxidoreductase; HET: 6PL; 1.55A {Rhodococcus opacus} PDB: 3hhx_A* 3hgi_A* 3hj8_A* 3hjq_A* 3hjs_A* 3i4v_A* 3hkp_A* 3i51_A* 3i4y_A*
Probab=31.43 E-value=24 Score=25.67 Aligned_cols=25 Identities=16% Similarity=0.518 Sum_probs=21.1
Q ss_pred CCCEEEEEEEcCCCCC------------------CCCCeeeee
Q psy11961 34 EGGVWKVRVHLPENYP------------------FKSPSIGFM 58 (109)
Q Consensus 34 ~gg~~~~~i~f~~~yP------------------~~pP~v~f~ 58 (109)
+.|.|.|+-.+|.-|| .+||.|.|.
T Consensus 182 ~dG~y~F~TI~Pg~Yp~p~dGp~G~lL~~~grh~~RpaHIH~~ 224 (280)
T 3hhy_A 182 EEGRYEITTIQPAPYQIPTDGPTGQFIEAQNGHPWRPAHLHLI 224 (280)
T ss_dssp TTSEEEEEEECCCCEECCCSSHHHHHHHHTTCCCEECSCEEEE
T ss_pred CCceEEEEEECCcCcCCCCCCcHHHHHHhcCCCCCCCcEEEEE
Confidence 3699999999998886 578888887
No 76
>3o5u_A Chlorocatechol 1,2-dioxygenase; beta barrel,oxidoreductase, oxidoreductase; HET: MYY DHB; 2.35A {Rhodococcus opacus} PDB: 3o32_A* 1s9a_A* 3o6j_A* 3o6r_A*
Probab=25.00 E-value=47 Score=23.78 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=20.9
Q ss_pred CCCEEEEEEEcCCCCC-------------------CCCCeeeee
Q psy11961 34 EGGVWKVRVHLPENYP-------------------FKSPSIGFM 58 (109)
Q Consensus 34 ~gg~~~~~i~f~~~yP-------------------~~pP~v~f~ 58 (109)
+.|.|.|+-.+|.-|| .+||.|.|.
T Consensus 155 ~~G~y~F~TI~Pg~Yp~p~dgp~G~ll~a~~grh~~RpaHIHf~ 198 (257)
T 3o5u_A 155 EDGSIEFHSIRPVPYEIPKAGPTGQLMNSYLGRHSWRPAHIHIR 198 (257)
T ss_dssp TTSEEEEEEECCCCEECCTTSHHHHHHHTTTSSCCEECCCEEEE
T ss_pred CCceEEEEEECCCCcCCCCCCchhhhhhhhccCCCCCCceEEEE
Confidence 4799999999999886 367888777
No 77
>2ccv_A Helix pomatia agglutinin; lectin, snail; HET: A2G NAG; 1.30A {Helix pomatia} SCOP: b.154.1.1 PDB: 2cgy_A* 2cgz_A* 2ce6_A
Probab=23.54 E-value=1.3e+02 Score=18.10 Aligned_cols=23 Identities=9% Similarity=0.060 Sum_probs=18.9
Q ss_pred CEEEEEEEcCCCCCCCCCeeeeec
Q psy11961 36 GVWKVRVHLPENYPFKSPSIGFMN 59 (109)
Q Consensus 36 g~~~~~i~f~~~yP~~pP~v~f~t 59 (109)
..+...+.|+..|.. +|+|.+.-
T Consensus 29 R~~~~~V~F~~~F~~-~P~V~v~l 51 (101)
T 2ccv_A 29 RELAKNITFASPYCR-PPVVLLSI 51 (101)
T ss_dssp EEEEEEEECSSCCSS-CCEEEEEE
T ss_pred eEEEEEeEeCcccCC-CCEEEEEe
Confidence 358888999999985 99997773
Done!