RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11961
(109 letters)
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural
genomics, structural genomics consortium; 2.10A {Homo
sapiens}
Length = 179
Score = 144 bits (366), Expect = 9e-46
Identities = 81/114 (71%), Positives = 88/114 (77%), Gaps = 13/114 (11%)
Query: 1 MSSPSAGTRRMNIDVIKLIESKHE-------------LFGPRDTPYEGGVWKVRVHLPEN 47
MSSPS G RRM+ DVIKLIESKHE +GP+ TPYEGGVWKVRV LP+
Sbjct: 20 MSSPSPGKRRMDTDVIKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDK 79
Query: 48 YPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTPLYDLSNIFECFLPQLLT 101
YPFKSPSIGFMNKI+HPNI E SGTVCL+VINQ WT LYDL+NIFE FLPQLL
Sbjct: 80 YPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLA 133
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI,
protein structure initiative ubiquitin conjugating
enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Length = 171
Score = 133 bits (337), Expect = 2e-41
Identities = 55/113 (48%), Positives = 70/113 (61%), Gaps = 13/113 (11%)
Query: 2 SSPSAGTRRMNIDVIKLIESKHELF-------------GPRDTPYEGGVWKVRVHLPENY 48
+ RR +D ++L S +++ GP TPYE G W + V LP +Y
Sbjct: 8 AGNLRSNRRREMDYMRLCNSTRKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDY 67
Query: 49 PFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTPLYDLSNIFECFLPQLLT 101
PFKSPSIGF N+I HPN+ E SG+VCL+VINQ WTP+Y L NIF+ FLPQLL
Sbjct: 68 PFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLR 120
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL
structural genomics consortium, SGC, ligase; HET: PG4;
2.38A {Plasmodium falciparum}
Length = 152
Score = 128 bits (324), Expect = 8e-40
Identities = 54/77 (70%), Positives = 62/77 (80%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
GP T YEGG+WKV V LP++YPF SPSIGFMNK+ HPN+ E SG+VCL+VINQ WTP
Sbjct: 35 FHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVINQTWTP 94
Query: 85 LYDLSNIFECFLPQLLT 101
LY L N+FE FLPQLLT
Sbjct: 95 LYSLVNVFEVFLPQLLT 111
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent
degradation, ligase; NMR {Saccharomyces cerevisiae}
SCOP: a.5.2.1 d.20.1.1
Length = 215
Score = 103 bits (258), Expect = 4e-29
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
GP TPYEGG + V + +P YPFK P + F K+YHPNI +G +CL+++ AW+P
Sbjct: 39 FLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNAWSP 98
Query: 85 LYDLSNIFECFLPQLLT 101
+ L + L LL
Sbjct: 99 VITLKSALIS-LQALLQ 114
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting,
ligase, alternative splicing, cytoplasm, UBL
conjugation, UBL conjugation pathway; 1.86A {Homo
sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Length = 253
Score = 104 bits (260), Expect = 4e-29
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP DTPYEGG +++ + +PE YPF P + F+ KI+HPNI +G +CL+++ W
Sbjct: 96 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA 155
Query: 85 LYDLSNIFECFLPQLLT 101
L + L LL
Sbjct: 156 AMTLRTVLL-SLQALLA 171
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating
enzyme, protein degradatio structural proteomics in
europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB:
2bf8_A
Length = 159
Score = 100 bits (251), Expect = 1e-28
Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP DTPYEGG +++ + +PE YPF P + F+ KI+HPNI +G +CL+++ W
Sbjct: 47 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA 106
Query: 85 LYDLSNI 91
L +
Sbjct: 107 AMTLRTV 113
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure,
ATP-binding, isopeptide BO ligase, nucleotide-binding,
UBL conjugation pathway; 1.80A {Homo sapiens} PDB:
3k9p_A 1yla_A 2o25_A
Length = 201
Score = 100 bits (252), Expect = 2e-28
Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP DTPYEGG +++ + +PE YPF P + F+ KI+HPNI +G +CL+++ W
Sbjct: 44 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA 103
Query: 85 LYDLSNI 91
L +
Sbjct: 104 AMTLRTV 110
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces
cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Length = 149
Score = 97.0 bits (242), Expect = 2e-27
Identities = 29/67 (43%), Positives = 42/67 (62%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
GP TPYEGG + V + +P YPFK P + F K+YHPNI +G +CL+++ AW+P
Sbjct: 38 FLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSP 97
Query: 85 LYDLSNI 91
+ L +
Sbjct: 98 VITLKSA 104
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721,
structural genomics, structural genomics consortium,
SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Length = 193
Score = 97.9 bits (244), Expect = 2e-27
Identities = 24/67 (35%), Positives = 41/67 (61%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP TPYEGG + + + +P +YP+ P + F+ KI+HPNI +G +CL+++ W+P
Sbjct: 81 IAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSP 140
Query: 85 LYDLSNI 91
+
Sbjct: 141 ALTIRTA 147
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC,
ligase; 1.90A {Plasmodium yoelii}
Length = 216
Score = 97.9 bits (244), Expect = 4e-27
Identities = 26/67 (38%), Positives = 41/67 (61%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP TPYEGG + + + +P +YP+ P I F+ KI+HPNI +G +CL+V+ W+P
Sbjct: 59 IKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLKNEWSP 118
Query: 85 LYDLSNI 91
+
Sbjct: 119 ALTIRTA 125
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo
sapiens} SCOP: d.20.1.1
Length = 158
Score = 92.7 bits (231), Expect = 1e-25
Identities = 22/67 (32%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP TPY GG++++++ L +++P P F+ KI+HPN+ +G +C+NV+ + WT
Sbjct: 49 IEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNV-GANGEICVNVLKRDWTA 107
Query: 85 LYDLSNI 91
+ ++
Sbjct: 108 ELGIRHV 114
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A
2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Length = 155
Score = 91.6 bits (228), Expect = 3e-25
Identities = 25/67 (37%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP +PYE G++++ ++LP++YP ++P + F+ KIYHPNI + G +CL+V+ W+P
Sbjct: 41 IEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNI-DRLGRICLDVLKTNWSP 99
Query: 85 LYDLSNI 91
+ +
Sbjct: 100 ALQIRTV 106
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas
conjugation pathway, structural genomics, structural
genomi consortium; 1.85A {Plasmodium falciparum} PDB:
3e95_A
Length = 149
Score = 91.5 bits (228), Expect = 3e-25
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP TPYEGG +K+ + LPE YP + P + F+ KIYHPNI + G +CL+++ W+P
Sbjct: 37 INGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNI-DKLGRICLDILKDKWSP 95
Query: 85 LYDLSNI 91
+ +
Sbjct: 96 ALQIRTV 102
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein
complex, E3 ligase, ubiquitiny TPR, heat-shock protein;
2.9A {Homo sapiens} SCOP: d.20.1.1
Length = 154
Score = 91.6 bits (228), Expect = 4e-25
Identities = 27/67 (40%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP+D+P+EGG +K+ + LPE YP +P + FM KIYHPN+ + G +CL+++ W+P
Sbjct: 41 IAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNV-DKLGRICLDILKDKWSP 99
Query: 85 LYDLSNI 91
+ +
Sbjct: 100 ALQIRTV 106
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway,
structural genomics, protein structure initiative; 1.10A
{Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A
2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B
3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D
4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Length = 150
Score = 90.8 bits (226), Expect = 5e-25
Identities = 27/67 (40%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP ++PY+GGV+ + +H P +YPFK P + F +IYHPNI +G++CL+++ W+P
Sbjct: 40 IMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI-NSNGSICLDILRSQWSP 98
Query: 85 LYDLSNI 91
+S +
Sbjct: 99 ALTISKV 105
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin
carrier protein, thioester ligase; 2.00A {Spisula
solidissima} SCOP: d.20.1.1
Length = 156
Score = 90.8 bits (226), Expect = 6e-25
Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
L GP+DT YE +K+ + P +YP+K P + F +HPN+ + SG +CL+++ + WT
Sbjct: 45 LDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNV-DQSGNICLDILKENWTA 103
Query: 85 LYDLSNI 91
YD+ I
Sbjct: 104 SYDVRTI 110
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation
pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Length = 194
Score = 91.7 bits (228), Expect = 6e-25
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP + YEGGV+ + + YPFK P + F +IYH NI G +CL+++ W+P
Sbjct: 84 ILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNI-NSQGVICLDILKDNWSP 142
Query: 85 LYDLSNI 91
+S +
Sbjct: 143 ALTISKV 149
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural
genomics consortium, ubiquit ubiquitin-conjugating
enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP:
d.20.1.1
Length = 166
Score = 90.8 bits (226), Expect = 8e-25
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP D+PY GGV+ + +H P +YPFK P + F KIYHPNI G +CL+++ W+P
Sbjct: 57 IMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNI-NSQGAICLDILKDQWSP 115
Query: 85 LYDLSNI 91
+S +
Sbjct: 116 ALTISKV 122
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation;
2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 169
Score = 90.5 bits (225), Expect = 1e-24
Identities = 26/67 (38%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP DTPYE G +++ + E YP K P + F+++++HPN+ +G +CL+++ WTP
Sbjct: 40 IIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNV-YANGEICLDILQNRWTP 98
Query: 85 LYDLSNI 91
YD+++I
Sbjct: 99 TYDVASI 105
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL
conjugation pathway; HET: CME; 1.94A {Homo sapiens}
SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Length = 165
Score = 90.4 bits (225), Expect = 1e-24
Identities = 28/67 (41%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP D+PY+GGV+ + +H P +YPFK P + F +IYHPNI +G++CL+++ W+P
Sbjct: 55 IMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI-NSNGSICLDILRSQWSP 113
Query: 85 LYDLSNI 91
+S +
Sbjct: 114 ALTISKV 120
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics,
PSI, protein structure initiative; 2.63A {Trypanosoma
cruzi}
Length = 167
Score = 90.2 bits (224), Expect = 1e-24
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 25 LFGPRDTPY--EGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAW 82
+ P D+ Y G +++ V ++YP + P++ F+ +Y P + G G +C ++N W
Sbjct: 56 VKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLV-TGEGGICDRMVNDFW 114
Query: 83 TPLYDLSNIFECFLPQL 99
TP S++ + L ++
Sbjct: 115 TPDQHASDVIKLVLDRV 131
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase;
2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A
2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Length = 152
Score = 89.6 bits (223), Expect = 1e-24
Identities = 27/67 (40%), Positives = 50/67 (74%), Gaps = 1/67 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+FGP DTP++GG +K+ + E+YP K P++ F+++++HPNI G++CL+++ W+P
Sbjct: 40 IFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSP 98
Query: 85 LYDLSNI 91
+YD++ I
Sbjct: 99 IYDVAAI 105
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein
complex, ubiquitin conjugating ENZY complex, peroxisomal
protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A
2y9o_A
Length = 172
Score = 90.2 bits (224), Expect = 2e-24
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMN-KIYHPNICEGSGTVCLNVI-NQAW 82
+ GP DTPYE +++ + +P +YP P I FM I H N+ +G +CLN++ + W
Sbjct: 54 ISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEW 113
Query: 83 TPLYDLSNI 91
TP++DL +
Sbjct: 114 TPVWDLLHC 122
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1;
inhibition, hydrolase-ligase complex; 3.30A {Homo
sapiens} PDB: 4ddi_A
Length = 399
Score = 94.6 bits (235), Expect = 2e-24
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP D+PY+GGV+ + +H P +YPFK P + F +IYHPNI +G++ L+++ W+P
Sbjct: 39 IMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI-NSNGSISLDILRSQWSP 97
Query: 85 LYDLSNIFECFLPQLLTP 102
+S + L P
Sbjct: 98 ALTISKVLLSICSLLCDP 115
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens}
SCOP: d.20.1.1
Length = 179
Score = 89.7 bits (223), Expect = 3e-24
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ G T YE +K+ + P YP+ +P++ F+ YHPN+ + G + L+++ + W+
Sbjct: 66 IHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNV-DTQGNISLDILKEKWSA 124
Query: 85 LYDLSNI 91
LYD+ I
Sbjct: 125 LYDVRTI 131
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A
{Saccharomyces cerevisiae} PDB: 3tdi_C
Length = 190
Score = 90.2 bits (224), Expect = 3e-24
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ P + Y G + E YP + P + + KI+HPNI + G VCLN++ + W+P
Sbjct: 69 IVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNI-DLKGNVCLNILREDWSP 127
Query: 85 LYDLSNI 91
DL +I
Sbjct: 128 ALDLQSI 134
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2
M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Length = 160
Score = 88.5 bits (220), Expect = 5e-24
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 27 GPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTPLY 86
P + Y+ G + + + YP P + +YHPNI + G VCLN++ + W P+
Sbjct: 42 CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNI-DLEGNVCLNILREDWKPVL 100
Query: 87 DLSNIFECFLPQLLTP 102
+++I L P
Sbjct: 101 TINSIIYGLQYLFLEP 116
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular
complex, ubiquitin, ATP, conformational change,
thioester, switch, adenylation, protein turnover,
ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Length = 180
Score = 88.6 bits (220), Expect = 9e-24
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 27 GPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTPLY 86
P + Y+ G + + + YP P + +YHPNI + G V LN++ + W P+
Sbjct: 62 CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNI-DLEGNVALNILREDWKPVL 120
Query: 87 DLSNI 91
+++I
Sbjct: 121 TINSI 125
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics
consortium, SGC, ubiquitin- conjugating enzyme; 2.18A
{Homo sapiens} SCOP: d.20.1.1
Length = 169
Score = 87.8 bits (218), Expect = 1e-23
Identities = 17/69 (24%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVIN--QAW 82
+ G +++ ++G V+++ +H Y + P + F+ +HPN+ +G C++ ++ + W
Sbjct: 59 IEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKW 118
Query: 83 TPLYDLSNI 91
Y LS+I
Sbjct: 119 NTNYTLSSI 127
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Length = 138
Score = 85.8 bits (213), Expect = 4e-23
Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNV-INQAWT 83
+ GP + +E ++ + + NYP P + F++KI P + +G V + + W
Sbjct: 46 ILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWK 105
Query: 84 PLYDLSNI 91
Y + +
Sbjct: 106 RAYTMETL 113
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens}
SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Length = 155
Score = 85.4 bits (212), Expect = 7e-23
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVI-NQAWT 83
L P PY + +R+ P YPFK P I F KIYHPN+ + +G +CL +I ++ W
Sbjct: 40 LLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNV-DENGQICLPIISSENWK 98
Query: 84 PLYDLSNI 91
P +
Sbjct: 99 PCTKTCQV 106
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure,
elongated shape, E3 ubiquitin ligase, E2 ubiquitin
conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1
PDB: 1fbv_C* 3sy2_C 3sqv_C
Length = 154
Score = 85.4 bits (212), Expect = 9e-23
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVI-NQAWT 83
L P + PY+ G +++ ++ P YPFK P I F KIYHPNI E G VCL VI + W
Sbjct: 38 LIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE-KGQVCLPVISAENWK 96
Query: 84 PLYDLSNI 91
P +
Sbjct: 97 PATKTDQV 104
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural
genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo
sapiens} SCOP: d.20.1.1
Length = 169
Score = 85.5 bits (212), Expect = 9e-23
Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 5/71 (7%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVIN----Q 80
+ G +TPYE GV+K+ V +PE YPF+ P I F+ IYHPNI + +G +CL+V+
Sbjct: 40 ILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNI-DSAGRICLDVLKLPPKG 98
Query: 81 AWTPLYDLSNI 91
AW P +++ +
Sbjct: 99 AWRPSLNIATV 109
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3,
crystallography, ligase; 1.75A {Saccharomyces
cerevisiae} PDB: 2eke_A 3ong_B
Length = 157
Score = 84.6 bits (210), Expect = 2e-22
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVIN--QAW 82
+ G T + GGV+ + V P YP K P + F YHPN+ SGT+CL+++N Q W
Sbjct: 45 IPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNV-YPSGTICLSILNEDQDW 103
Query: 83 TPLYDLSNI 91
P L I
Sbjct: 104 RPAITLKQI 112
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small
ubiquitin like modifer, SMT3, ligase; 1.30A {Homo
sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A
1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A*
1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Length = 161
Score = 84.3 bits (209), Expect = 2e-22
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVIN--QAW 82
+ G + TP+EGG++K+R+ ++YP P F ++HPN+ SGTVCL+++ + W
Sbjct: 48 IPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVCLSILEEDKDW 106
Query: 83 TPLYDLSNI 91
P + I
Sbjct: 107 RPAITIKQI 115
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein
interaction, protein ligase complex; HET: DNA; 1.90A
{Schizosaccharomyces pombe}
Length = 163
Score = 83.9 bits (208), Expect = 4e-22
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVIN--QAW 82
+ G T +EGG++K+ + PE YP + P F ++HPN+ SGTVCL+++N + W
Sbjct: 51 IPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNV-YPSGTVCLSILNEEEGW 109
Query: 83 TPLYDLSNI 91
P + I
Sbjct: 110 KPAITIKQI 118
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown
function, structural genomics consortium, SGC; 2.80A
{Plasmodium falciparum 3D7}
Length = 136
Score = 83.1 bits (206), Expect = 5e-22
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNK-IYHPNICEGSGTVCLNVINQAWT 83
G +T Y V+K+++ P+NYP K P + F+ K H ++ +G +CL+V+ +
Sbjct: 56 YVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHV-YSNGDICLSVLGDDYN 114
Query: 84 PLYDLSNI 91
P +S +
Sbjct: 115 PSLSISGL 122
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics,
structural genomics consortium, unknown function; 1.86A
{Plasmodium vivax} SCOP: d.20.1.1
Length = 125
Score = 82.3 bits (204), Expect = 5e-22
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNK-IYHPNICEGSGTVCLNVINQAWT 83
G +T Y V+K+++ P++YP K P + F+ K H ++ +G +CL+++ +
Sbjct: 42 YVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHV-YSNGDICLSLLGDDYN 100
Query: 84 PLYDLSNI 91
P +S +
Sbjct: 101 PSLSISGL 108
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural
genomics consortium, (SGC), ligase; 1.82A {Homo sapiens}
SCOP: d.20.1.1
Length = 136
Score = 82.4 bits (204), Expect = 7e-22
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNK--IYHPNICEGSGTVCLNVINQAW 82
+ G T YEG +++ YPF SP + F + HP++ +G +CL+++ + W
Sbjct: 60 MEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHV-YSNGHICLSILTEDW 118
Query: 83 TPLYDLSNI 91
+P + ++
Sbjct: 119 SPALSVQSV 127
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle,
nucleotide-binding, UBL CON pathway; 2.50A {Homo
sapiens} PDB: 2edi_A
Length = 167
Score = 82.8 bits (205), Expect = 1e-21
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQ---- 80
P + Y+GG ++ +P+ Y P + + KI+HPNI E +G +CL+++ +
Sbjct: 50 TVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITE-TGEICLSLLREHSID 108
Query: 81 --AWTPLYDLSNI 91
W P L ++
Sbjct: 109 GTGWAPTRTLKDV 121
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G
structural genomics consortium, SGC, ligase; 2.40A
{Plasmodium falciparum} PDB: 3e95_C
Length = 156
Score = 82.0 bits (203), Expect = 2e-21
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 26 FGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVIN--QAWT 83
FG T +E ++ + + +NYP P++ F KI + + G V N ++ + W
Sbjct: 62 FGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCV-DNCGRVIKNNLHILKNWN 120
Query: 84 PLYDLSNI 91
Y + I
Sbjct: 121 RNYTIETI 128
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing,
nuclear protein, UBL conjugation pathway,ubiquitin,
ligase, structural genomics; 1.69A {Homo sapiens} SCOP:
d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Length = 160
Score = 81.3 bits (201), Expect = 4e-21
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTV---CLNVINQA 81
+ GP T YE ++ +++ YP P + F+ KI + +G V ++V+ +
Sbjct: 65 IIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAK- 123
Query: 82 WTPLYDLSNI 91
W Y + +
Sbjct: 124 WQNSYSIKVV 133
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating
enzyme variant, UBC13, HUBC13, polyubiquitination,
ligase, signaling protein; NMR {Homo sapiens}
Length = 170
Score = 81.3 bits (201), Expect = 5e-21
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTV---CLNVINQA 81
+ GP T YE ++ +++ YP P + F+ KI + +G V ++V+ +
Sbjct: 75 IIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAK- 133
Query: 82 WTPLYDLSNI 91
W Y + +
Sbjct: 134 WQNSYSIKVV 143
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase,
UBL conjugation pathway, endo reticulum, membrane,
metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A
2kly_A
Length = 164
Score = 78.5 bits (194), Expect = 5e-20
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 14/80 (17%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQA--- 81
+ GP DT +E GV+ + P +YP P + F +++HPNI G VC+++++
Sbjct: 40 IMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYP-DGRVCISILHAPGDD 98
Query: 82 ----------WTPLYDLSNI 91
W+P+ + I
Sbjct: 99 PMGYESSAERWSPVQSVEKI 118
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase,
UBL conjugation pathway, structural genomics consortium
(SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Length = 187
Score = 79.1 bits (195), Expect = 5e-20
Identities = 19/67 (28%), Positives = 28/67 (41%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP TPYEGG + ++ P +PFK PSI + + W P
Sbjct: 50 VRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNP 109
Query: 85 LYDLSNI 91
+ +S I
Sbjct: 110 AWSVSTI 116
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme
domain, E2 domain, ligase-ligas inhibitor complex; HET:
U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Length = 183
Score = 79.0 bits (195), Expect = 5e-20
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 14/80 (17%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQA--- 81
+FGP +T YEGG +K R+ P +YP+ P+ F+ K++HPNI E +G VC+++++
Sbjct: 44 IFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYE-TGDVCISILHPPVDD 102
Query: 82 ----------WTPLYDLSNI 91
W P ++ I
Sbjct: 103 PQSGELPSERWNPTQNVRTI 122
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation
pathway, structural genomics, structural genomics
consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB:
1pzv_A
Length = 172
Score = 78.2 bits (193), Expect = 7e-20
Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 14/80 (17%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQA--- 81
+ GP DT YEGGV+K + P++YP + P + F+ +I+HPN+ + +G VC++++++
Sbjct: 54 IIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDK-NGDVCISILHEPGED 112
Query: 82 ----------WTPLYDLSNI 91
W P++ + I
Sbjct: 113 KYGYEKPEERWLPIHTVETI 132
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase,
yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 165
Score = 77.0 bits (190), Expect = 2e-19
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 14/80 (17%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQA--- 81
+ GP DTPY GV+ ++ P++YP P + F I HPNI +G VC+++++
Sbjct: 41 IQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYP-NGEVCISILHSPGDD 99
Query: 82 ----------WTPLYDLSNI 91
W+P+ + I
Sbjct: 100 PNMYELAEERWSPVQSVEKI 119
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase,
protease inhibitor, thiol protease inhibitor, UBL
conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Length = 323
Score = 64.7 bits (157), Expect = 7e-14
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 20/86 (23%)
Query: 12 NIDVIK-LIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYH-----PN 65
+D++K LI GP DTPY G ++ V+ P++YP P + H PN
Sbjct: 108 RLDIMKVLI------TGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPN 161
Query: 66 ICEGSGTVCLNVIN-------QAWTP 84
+ G VCL+++N + W P
Sbjct: 162 LYN-DGKVCLSILNTWHGRPEEKWNP 186
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating
enzyme, structural genomics consortium ,SGC; 1.80A {Homo
sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Length = 186
Score = 62.6 bits (152), Expect = 1e-13
Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 13/81 (16%)
Query: 24 ELFG-PRDTPYEGGV-----------WKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSG 71
+L D+P + + +N+PF P + + + G G
Sbjct: 65 KLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGG 124
Query: 72 TVCLNVI-NQAWTPLYDLSNI 91
+C+ ++ Q W+ Y + ++
Sbjct: 125 ALCMELLTKQGWSSAYSIESV 145
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin
binding, protein transport; 1.40A {Homo sapiens} PDB:
3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A
1kpq_A 1m4p_A 1m4q_A 1s1q_A
Length = 146
Score = 31.1 bits (70), Expect = 0.039
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 8/78 (10%)
Query: 25 LFGPRDTPYEGGVWKVRVH--LPENYPFKSPSI-----GFMNKIYHPNICEGSGTVCLNV 77
L G PY G + + + L + YP+ P M ++ + +G + L
Sbjct: 56 LTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHV-DANGKIYLPY 114
Query: 78 INQAWTPLYDLSNIFECF 95
+++ P DL + +
Sbjct: 115 LHEWKHPQSDLLGLIQVM 132
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.048
Identities = 3/17 (17%), Positives = 9/17 (52%)
Query: 16 IKLIESKHELFGPRDTP 32
+K +++ +L+ P
Sbjct: 22 LKKLQASLKLYADDSAP 38
>2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural
genomics, protein structure initiative, nysgxrc; 1.80A
{Agrobacterium tumefaciens str} PDB: 4dn1_A
Length = 388
Score = 26.1 bits (58), Expect = 2.7
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 14 DVIKLIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPS 54
I +E L PR PY G + + V P Y + +
Sbjct: 3 SPIATVEV-FTLTQPRKVPYLGALREGEVVNPNGYIVRKGN 42
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.20.1.3
Length = 154
Score = 25.8 bits (56), Expect = 2.7
Identities = 4/17 (23%), Positives = 11/17 (64%)
Query: 39 KVRVHLPENYPFKSPSI 55
++V +P +YP+ + +
Sbjct: 78 DLQVTMPHSYPYLALQL 94
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase,
ketohexose; 1.98A {Clostridium cellulolyticum} PDB:
3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Length = 294
Score = 25.9 bits (57), Expect = 2.9
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 52 SPSIGFMNKIYHPNICEGS 70
++ M +H NI E S
Sbjct: 176 HNNVKVMLDTFHMNIEEDS 194
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 128
Score = 25.6 bits (56), Expect = 3.3
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 39 KVRVHLPENYPFKSPSI 55
++ HLP NYP P I
Sbjct: 59 ELVFHLPVNYPSCLPGI 75
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose
3-epimeras tagatose 3-epimerase, isomerase; 2.20A
{Thermotoga maritima}
Length = 290
Score = 25.9 bits (57), Expect = 3.3
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 52 SPSIGFMNKIYHPNICEGS 70
S +G + +H NI E +
Sbjct: 194 SNRVGILADTFHMNIEEVN 212
>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium
tumefaciens} PDB: 2hk1_A*
Length = 309
Score = 25.6 bits (56), Expect = 3.9
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 52 SPSIGFMNKIYHPNICEGS 70
++ M +H NI E S
Sbjct: 195 KNNVKVMLDTFHMNIEEDS 213
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.8 bits (56), Expect = 4.2
Identities = 12/79 (15%), Positives = 24/79 (30%), Gaps = 34/79 (43%)
Query: 39 KVRVH---LPENYPFKSP----------------SIGFMNK-----IYHP----NICEGS 70
K++ LP PF S ++ F K +Y ++ S
Sbjct: 413 KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS 472
Query: 71 GTVCLNVINQA------WT 83
G++ +++ W
Sbjct: 473 GSISERIVDCIIRLPVKWE 491
Score = 25.0 bits (54), Expect = 6.2
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 6/22 (27%)
Query: 11 MNIDVIKLIES------KHELF 26
ID+I+L +S + LF
Sbjct: 1875 QKIDIIELQKSLSLEEVEGHLF 1896
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: d.20.1.3
Length = 152
Score = 25.0 bits (54), Expect = 4.6
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 39 KVRVHLPENYPFKSPSI 55
+ LP YP P I
Sbjct: 76 SLACILPFKYPAVLPEI 92
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose,
transferase, structural genomics, PSI-2, protein
structure initiative; HET: ATP DXP XUL ADP; 2.00A
{Lactobacillus acidophilus} PDB: 3gbt_A*
Length = 504
Score = 24.5 bits (54), Expect = 9.0
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 70 SGTVCLNVINQAW-TPLYDLSNIFECFLPQL 99
+GT LN+ W L D+ I + LP++
Sbjct: 177 AGTGILNLKTLTWDQELLDILKIKKEQLPKI 207
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2,
E.C.2.7.11.17, phosphorylation, AMPKK, metabolism,
binding, calmodulin-binding; HET: 609; 2.40A {Homo
sapiens}
Length = 298
Score = 24.5 bits (54), Expect = 9.6
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 7/59 (11%)
Query: 16 IKLIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPS------IGFMNKIYHPNICE 68
+K++ SK +L P R + P I + K+ HPN+ +
Sbjct: 43 MKVL-SKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKKLDHPNVVK 100
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.141 0.455
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,714,837
Number of extensions: 89646
Number of successful extensions: 320
Number of sequences better than 10.0: 1
Number of HSP's gapped: 293
Number of HSP's successfully gapped: 66
Length of query: 109
Length of database: 6,701,793
Length adjustment: 73
Effective length of query: 36
Effective length of database: 4,663,560
Effective search space: 167888160
Effective search space used: 167888160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.6 bits)