RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11961
(109 letters)
>d2z5da1 d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 H [TaxId: 9606]}
Length = 152
Score = 79.8 bits (196), Expect = 5e-21
Identities = 77/111 (69%), Positives = 85/111 (76%), Gaps = 13/111 (11%)
Query: 4 PSAGTRRMNIDVIKLIESKHE-------------LFGPRDTPYEGGVWKVRVHLPENYPF 50
PS G RRM+ DV+KLIESKHE +GP+ TPYEGGVWKVRV LP+ YPF
Sbjct: 1 PSPGKRRMDTDVVKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPF 60
Query: 51 KSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTPLYDLSNIFECFLPQLLT 101
KSPSIGFMNKI+HPNI E SGTVCL+VINQ WT LYDL+NIFE FLPQLL
Sbjct: 61 KSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLA 111
>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC
{Leishmania major [TaxId: 5664]}
Length = 158
Score = 67.4 bits (164), Expect = 4e-16
Identities = 55/107 (51%), Positives = 69/107 (64%), Gaps = 13/107 (12%)
Query: 8 TRRMNIDVIKLIESKHELF-------------GPRDTPYEGGVWKVRVHLPENYPFKSPS 54
RR +D ++L S +++ GP TPYE G W + V LP +YPFKSPS
Sbjct: 2 NRRREMDYMRLCNSTRKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPS 61
Query: 55 IGFMNKIYHPNICEGSGTVCLNVINQAWTPLYDLSNIFECFLPQLLT 101
IGF N+I HPN+ E SG+VCL+VINQ WTP+Y L NIF+ FLPQLL
Sbjct: 62 IGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLR 108
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch8 [TaxId: 9606]}
Length = 148
Score = 64.4 bits (156), Expect = 5e-15
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 18 LIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNV 77
+ E + + GP + YEGGV+ + + +YPFK P + F +IYH NI G +CL++
Sbjct: 31 IYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINS-QGVICLDI 89
Query: 78 INQAWTPLYDLSNIFECFLPQLLTP 102
+ W+P +S + L
Sbjct: 90 LKDNWSPALTISKVLLSICSLLTDC 114
>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 141
Score = 63.4 bits (154), Expect = 7e-15
Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 8/86 (9%)
Query: 24 ELFGPRDTPYEGGVWK--VRVHLPENYPFKSPSI-----GFMNKIYHPNICEGSGTVCLN 76
L G PY G + + + L + YP+ P M ++ +G + L
Sbjct: 52 NLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDA-NGKIYLP 110
Query: 77 VINQAWTPLYDLSNIFECFLPQLLTP 102
+++ P DL + + +
Sbjct: 111 YLHEWKHPQSDLLGLIQVMIVVFGDE 136
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC
{Caenorhabditis elegans, E2 2 [TaxId: 6239]}
Length = 147
Score = 63.3 bits (153), Expect = 1e-14
Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 18 LIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNV 77
L + + GP ++PY+GGV+ + +H P +YPFK P + F +IYHPNI +G++CL++
Sbjct: 30 LFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDI 88
Query: 78 INQAWTPLYDLSNIFECFLPQLLTP 102
+ W+P +S + L P
Sbjct: 89 LRSQWSPALTISKVLLSICSLLCDP 113
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 G1 [TaxId: 9606]}
Length = 125
Score = 62.0 bits (150), Expect = 2e-14
Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP DT YEGGV+K + P++YP + P + F+ +I+HPN+ + +G VC++++++
Sbjct: 36 IIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDK-NGDVCISILHEPGED 94
Query: 85 LYDLSNIFECFLP 97
Y E +LP
Sbjct: 95 KYGYEKPEERWLP 107
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}
Length = 139
Score = 60.8 bits (147), Expect = 9e-14
Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 2/93 (2%)
Query: 12 NIDVIKLIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSG 71
+ + + L + GP T YE ++ +++ YP P + F+ KI + +G
Sbjct: 32 DDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNG 91
Query: 72 TVCLNVIN--QAWTPLYDLSNIFECFLPQLLTP 102
V I+ W Y + + + +++
Sbjct: 92 VVDPRAISVLAKWQNSYSIKVVLQELRRLMMSK 124
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 56.2 bits (135), Expect = 3e-12
Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNK--IYHPNICEGSGTVCLNVINQAW 82
+ G T YEG +++ YPF SP + F + HP++ +G +CL+++ + W
Sbjct: 41 MEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYS-NGHICLSILTEDW 99
Query: 83 TPLYDLSNIFECFLPQLLT 101
+P + ++ + +L+
Sbjct: 100 SPALSVQSVCLSII-SMLS 117
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721,
E2 domain {Toxoplasma gondii [TaxId: 5811]}
Length = 161
Score = 56.4 bits (135), Expect = 6e-12
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ GP TPYEGG + + + +P +YP+ P + F+ KI+HPNI +G +CL+++ W+P
Sbjct: 50 IAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSP 109
Query: 85 LYDLSNIFECFLPQLLTP 102
+ L P
Sbjct: 110 ALTIRTALLSIQAMLADP 127
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 M [TaxId: 9606]}
Length = 157
Score = 55.8 bits (134), Expect = 8e-12
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ P + Y+ G + + + YP P + +YHPNI G VCLN++ + W P
Sbjct: 37 VICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDL-EGNVCLNILREDWKP 95
Query: 85 LYDLSNIFECFLPQLLTP 102
+ +++I L P
Sbjct: 96 VLTINSIIYGLQYLFLEP 113
>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}
Length = 136
Score = 55.4 bits (133), Expect = 9e-12
Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 11 MNIDVIKLIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGS 70
+ D I + + + GP + +E ++ + + NYP P + F++KI P + +
Sbjct: 30 ADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTT 89
Query: 71 GTVCLNV-INQAWTPLYDLSNIFECFLPQLLTP 102
G V + + W Y + + ++ TP
Sbjct: 90 GEVQTDFHTLRDWKRAYTMETLLLDLRKEMATP 122
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode
(Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}
Length = 161
Score = 55.9 bits (134), Expect = 9e-12
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 1 MSSPSAGTRRMNIDVIKLIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNK 60
P G +D + + + + GP DT YEGG +K + P +YP K P + F+++
Sbjct: 13 RRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISE 72
Query: 61 IYHPNICEGSGTVCLNVINQA-------------WTPLYDLSNIFECFLPQLLTP 102
I+HPNI + G VC+++++ W P++ + I + L P
Sbjct: 73 IWHPNIDK-EGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDP 126
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}
Length = 152
Score = 55.1 bits (132), Expect = 2e-11
Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 22 KHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQA 81
+ + GP +PYE G++++ ++LP++YP ++P + F+ KIYHPNI G +CL+V+
Sbjct: 36 QVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDR-LGRICLDVLKTN 94
Query: 82 WTPLYDLSNIFECFLPQLLTP 102
W+P + + L +P
Sbjct: 95 WSPALQIRTVLLSIQALLASP 115
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa,
E2 domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 154
Score = 55.2 bits (132), Expect = 2e-11
Identities = 30/85 (35%), Positives = 46/85 (54%)
Query: 18 LIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNV 77
E + E+ GP DTPYEGG +++ + +PE YPF P + F+ KI+HPNI +G +CL++
Sbjct: 36 FTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDI 95
Query: 78 INQAWTPLYDLSNIFECFLPQLLTP 102
+ W L + L
Sbjct: 96 LKDQWAAAMTLRTVLLSLQALLAAA 120
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch7 [TaxId: 9606]}
Length = 144
Score = 54.4 bits (130), Expect = 2e-11
Identities = 24/80 (30%), Positives = 37/80 (46%)
Query: 23 HELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAW 82
L P + PY+ G +++ ++ P YPFK P I F KIYHPNI E + + W
Sbjct: 33 QGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENW 92
Query: 83 TPLYDLSNIFECFLPQLLTP 102
P + + + + P
Sbjct: 93 KPATKTDQVIQSLIALVNDP 112
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId:
4932]}
Length = 153
Score = 54.7 bits (131), Expect = 2e-11
Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 18 LIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNV 77
++ + GP DTPYE G +++ + E YP K P + F+++++HPN+ +G +CL++
Sbjct: 32 VMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYA-NGEICLDI 90
Query: 78 INQAWTPLYDLSNIFECFLPQLLTP 102
+ WTP YD+++I P
Sbjct: 91 LQNRWTPTYDVASILTSIQSLFNDP 115
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme,
E2 domain {Plasmodium chabaudi [TaxId: 5825]}
Length = 109
Score = 53.6 bits (128), Expect = 3e-11
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
G +T Y V+K+++ P++YP K P + F+ K +G +CL+++ + P
Sbjct: 34 YVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLGDDYNP 93
Query: 85 LYDLSNIFECFLPQLLT 101
+S + + +L+
Sbjct: 94 SLSISGLVLSII-SMLS 109
>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 J2 [TaxId: 9606]}
Length = 157
Score = 54.0 bits (129), Expect = 4e-11
Identities = 21/85 (24%), Positives = 35/85 (41%)
Query: 18 LIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNV 77
++E + + GP TPYEGG + ++ P +PFK PSI + +
Sbjct: 30 ILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDF 89
Query: 78 INQAWTPLYDLSNIFECFLPQLLTP 102
W P + +S I L ++
Sbjct: 90 HPDTWNPAWSVSTILTGLLSFMVEK 114
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}
Length = 164
Score = 52.9 bits (126), Expect = 1e-10
Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 14/115 (12%)
Query: 1 MSSPSAGTRRMNIDVIKLIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNK 60
+ G + + GP DTPY GV+ ++ P++YP P + F
Sbjct: 16 IKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPS 75
Query: 61 IYHPNICEGSGTVCLNVINQAW-------------TPLYDLSNIFECFLPQLLTP 102
I HPNI +G VC+++++ +P+ + I + L P
Sbjct: 76 ILHPNIYP-NGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEP 129
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}
Length = 149
Score = 51.7 bits (123), Expect = 3e-10
Identities = 34/102 (33%), Positives = 51/102 (50%)
Query: 1 MSSPSAGTRRMNIDVIKLIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNK 60
P+A + + K GP TPYEGG + V + +P YPFK P + F K
Sbjct: 14 KDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTK 73
Query: 61 IYHPNICEGSGTVCLNVINQAWTPLYDLSNIFECFLPQLLTP 102
+YHPNI +G +CL+++ AW+P+ L + L +P
Sbjct: 74 VYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSP 115
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 L6 [TaxId: 9606]}
Length = 150
Score = 51.3 bits (122), Expect = 5e-10
Identities = 25/80 (31%), Positives = 34/80 (42%)
Query: 23 HELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAW 82
H L P PY + +R+ P YPFK P I F KIYHPN+ E + ++ W
Sbjct: 34 HALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENW 93
Query: 83 TPLYDLSNIFECFLPQLLTP 102
P + E + P
Sbjct: 94 KPCTKTCQVLEALNVLVNRP 113
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc13 [TaxId: 9606]}
Length = 149
Score = 50.6 bits (120), Expect = 9e-10
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 23 HELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAW 82
+ GP+D+P+EGG +K+ + LPE YP +P + FM KIYHPN+ + G +CL+++ W
Sbjct: 36 VVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDK-LGRICLDILKDKW 94
Query: 83 TPLYDLSNIFECFLPQLLTP 102
+P + + L P
Sbjct: 95 SPALQIRTVLLSIQALLSAP 114
>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 152
Score = 50.0 bits (119), Expect = 1e-09
Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 15/92 (16%)
Query: 25 LFGPRDTPYEGGVW---KVRVHLPENYPFKSPSIGF-----------MNKIYHPNICEGS 70
++G T +G V + +P YP K P I + I + +
Sbjct: 58 IYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYI-DSN 116
Query: 71 GTVCLNVINQAWTPLYDLSNIFECFLPQLLTP 102
G + L +++ +L + + + L P
Sbjct: 117 GWIALPILHCWDPAAMNLIMVVQELMSLLHEP 148
>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC
{Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId:
6239]}
Length = 149
Score = 48.6 bits (115), Expect = 5e-09
Identities = 28/85 (32%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 18 LIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNV 77
++ + +FGP++TP+E G +K+ + E YP K P++ F++K++HPN+ G++CL++
Sbjct: 32 ILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYA-DGSICLDI 90
Query: 78 INQAWTPLYDLSNIFECFLPQLLTP 102
+ W+P YD++ I L P
Sbjct: 91 LQNRWSPTYDVAAILTSIQSLLDEP 115
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam
(Spisula solidissima), E-2C [TaxId: 6584]}
Length = 156
Score = 47.8 bits (113), Expect = 9e-09
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
L GP+DT YE +K+ + P +YP+K P + F +HPN+ + SG +CL+++ + WT
Sbjct: 45 LDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQ-SGNICLDILKENWTA 103
Query: 85 LYDLSNIFECFLPQLLTP 102
YD+ I L P
Sbjct: 104 SYDVRTILLSLQSLLGEP 121
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 T [TaxId: 9606]}
Length = 154
Score = 46.8 bits (110), Expect = 2e-08
Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 18 LIESKHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNV 77
+ + + ++ G +TPYE GV+K+ V +PE YPF+ P I F+ IYHPNI +G +CL+V
Sbjct: 31 MDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDS-AGRICLDV 89
Query: 78 IN----QAWTPLYDLSNIFECFL 96
+ AW P +++ +
Sbjct: 90 LKLPPKGAWRPSLNIATVLTSIQ 112
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc9 [TaxId: 9606]}
Length = 156
Score = 46.3 bits (109), Expect = 4e-08
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNV-INQAWT 83
+ G + TP+EGG++K+R+ ++YP P F ++HPN+ + ++ W
Sbjct: 43 IPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKDWR 102
Query: 84 PLYDLSNIFECFLPQLLTP 102
P + I L P
Sbjct: 103 PAITIKQILLGIQELLNEP 121
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch10 [TaxId: 9606]}
Length = 146
Score = 44.4 bits (104), Expect = 2e-07
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQAWTP 84
+ G T YE +K+ + P YP+ +P++ F+ YHPN+ G + L+++ + W+
Sbjct: 37 IHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDT-QGNISLDILKEKWSA 95
Query: 85 LYDLSNIFECFLPQLLTP 102
LYD+ I L P
Sbjct: 96 LYDVRTILLSIQSLLGEP 113
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC
{Human(Homo sapiens), E2 S [TaxId: 9606]}
Length = 151
Score = 43.6 bits (102), Expect = 4e-07
Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 22 KHELFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVINQA 81
+ + GP TPY GG++++++ L +++P P F+ KI+HPN+ +G +C+NV+ +
Sbjct: 39 QVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGA-NGEICVNVLKRD 97
Query: 82 WTPLYDLSNIFECFLPQLLTP 102
WT + ++ L+ P
Sbjct: 98 WTAELGIRHVLLTIKCLLIHP 118
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 U [TaxId: 9606]}
Length = 148
Score = 42.8 bits (100), Expect = 6e-07
Identities = 19/80 (23%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 25 LFGPRDTPYEGGVWKVRVHLPENYPFKSPSIGFMNKIYHPNICEGSGTVCLNVIN--QAW 82
+ G +++ ++G V+++ +H Y + P + F+ +HPN+ +G C++ ++ + W
Sbjct: 40 IEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKW 99
Query: 83 TPLYDLSNIFECFLPQLLTP 102
Y LS+I L P
Sbjct: 100 NTNYTLSSILLALQVMLSNP 119
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.141 0.455
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 437,205
Number of extensions: 19680
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 33
Length of query: 109
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 41
Effective length of database: 1,473,956
Effective search space: 60432196
Effective search space used: 60432196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.4 bits)