BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11963
(172 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 150 bits (378), Expect = 5e-37, Method: Composition-based stats.
Identities = 65/109 (59%), Positives = 86/109 (78%)
Query: 61 SGLYGAPSRTGKIKDIASFDAEFFGIHSKLANVMDPQLRMLLELTHESIMDGGFNPEELR 120
+GLYG P R GK+KD++ FDA FFG+HSK AN MDPQLRMLLE+T+E+I+DGG NP LR
Sbjct: 42 AGLYGLPRRMGKLKDLSRFDASFFGVHSKQANTMDPQLRMLLEVTYEAIVDGGINPASLR 101
Query: 121 GTRTGVYIGLMTTEANDFAEGNPEKLTGYETIGSTRAMLANRLSYAFNF 169
GT TGV++G+ +++A++ +PE L GY IG RAM+ANRLS+ F+F
Sbjct: 102 GTSTGVWVGVSSSDASEALSRDPETLVGYSMIGCQRAMMANRLSFFFDF 150
Score = 75.9 bits (185), Expect = 1e-14, Method: Composition-based stats.
Identities = 32/62 (51%), Positives = 45/62 (72%)
Query: 1 MDGGFNPEELRGTRTGVYIGLMTTEANDFAEGNPEKLTGYETIGSTRAMLANRLSYAFNF 60
+DGG NP LRGT TGV++G+ +++A++ +PE L GY IG RAM+ANRLS+ F+F
Sbjct: 91 VDGGINPASLRGTSTGVWVGVSSSDASEALSRDPETLVGYSMIGCQRAMMANRLSFFFDF 150
Query: 61 SG 62
G
Sbjct: 151 KG 152
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 143 bits (360), Expect = 5e-35, Method: Composition-based stats.
Identities = 61/109 (55%), Positives = 85/109 (77%)
Query: 61 SGLYGAPSRTGKIKDIASFDAEFFGIHSKLANVMDPQLRMLLELTHESIMDGGFNPEELR 120
+GLYG P R+GK+KD++ FDA FFG+H K A+ MDPQLR+LLE+T+E+I+DGG NP+ LR
Sbjct: 44 AGLYGLPRRSGKLKDLSRFDASFFGVHPKQAHTMDPQLRLLLEVTYEAIVDGGINPDSLR 103
Query: 121 GTRTGVYIGLMTTEANDFAEGNPEKLTGYETIGSTRAMLANRLSYAFNF 169
GT TGV++G+ +E ++ +PE L GY +G RAM+ANRLS+ F+F
Sbjct: 104 GTHTGVWVGVSGSETSEALSRDPETLVGYSMVGCQRAMMANRLSFFFDF 152
Score = 73.9 bits (180), Expect = 4e-14, Method: Composition-based stats.
Identities = 31/62 (50%), Positives = 44/62 (70%)
Query: 1 MDGGFNPEELRGTRTGVYIGLMTTEANDFAEGNPEKLTGYETIGSTRAMLANRLSYAFNF 60
+DGG NP+ LRGT TGV++G+ +E ++ +PE L GY +G RAM+ANRLS+ F+F
Sbjct: 93 VDGGINPDSLRGTHTGVWVGVSGSETSEALSRDPETLVGYSMVGCQRAMMANRLSFFFDF 152
Query: 61 SG 62
G
Sbjct: 153 RG 154
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 72.8 bits (177), Expect = 9e-14, Method: Composition-based stats.
Identities = 40/98 (40%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
Query: 69 RTGKIKDIASFDAEFFGIHSKLANVMDPQLRMLLELTHESIMDGGFNPEELRGTRTGVYI 128
+ G + D A FDAEFFG+ + A MDPQ R+LLE + E + + G +P LRGT TGV++
Sbjct: 67 KGGFLDDAAGFDAEFFGVSPREAAAMDPQQRLLLETSWELVENAGIDPHSLRGTATGVFL 126
Query: 129 GLMT-TEANDFAEGNPEKLTGYETIGSTRAMLANRLSY 165
G+ D A E + GY G A+ + R+SY
Sbjct: 127 GVAKFGYGEDTAAA--EDVEGYSVTGVAPAVASGRISY 162
Score = 36.6 bits (83), Expect = 0.007, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 2 DGGFNPEELRGTRTGVYIGLMT-TEANDFAEGNPEKLTGYETIGSTRAMLANRLSYAFNF 60
+ G +P LRGT TGV++G+ D A E + GY G A+ + R+SY
Sbjct: 109 NAGIDPHSLRGTATGVFLGVAKFGYGEDTAAA--EDVEGYSVTGVAPAVASGRISYTMGL 166
Query: 61 SG 62
G
Sbjct: 167 EG 168
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 64.7 bits (156), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 54/95 (56%)
Query: 71 GKIKDIASFDAEFFGIHSKLANVMDPQLRMLLELTHESIMDGGFNPEELRGTRTGVYIGL 130
G + FDA FFGI + A DPQ R+ LE++ E++ G +P LRG+ TGV+ G+
Sbjct: 90 GXLAAAGDFDAGFFGISPREALAXDPQQRIXLEISWEALERAGHDPVSLRGSATGVFTGV 149
Query: 131 MTTEANDFAEGNPEKLTGYETIGSTRAMLANRLSY 165
T + + P+++ GY G+ ++ + R++Y
Sbjct: 150 GTVDYGPRPDEAPDEVLGYVGTGTASSVASGRVAY 184
Score = 38.9 bits (89), Expect = 0.001, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 3 GGFNPEELRGTRTGVYIGLMTTEANDFAEGNPEKLTGYETIGSTRAMLANRLSYAFNFSG 62
G +P LRG+ TGV+ G+ T + + P+++ GY G+ ++ + R++Y G
Sbjct: 131 AGHDPVSLRGSATGVFTGVGTVDYGPRPDEAPDEVLGYVGTGTASSVASGRVAYCLGLEG 190
>pdb|2VDJ|A Chain A, Crystal Structure Of Homoserine O-acetyltransferase (meta)
From Bacillus Cereus With Homoserine
Length = 301
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 62 GLYGAPSRTGKIKDIASFDAEFFGIHSKLANVMDPQLRMLLELT 105
G++ R +K + FD FF +HS+ V + +R + ELT
Sbjct: 166 GVFEHEVREQHVKLLQGFDELFFAVHSRHTEVRESDIREVKELT 209
>pdb|2Y32|A Chain A, Crystal Structure Of Bradavidin
pdb|2Y32|B Chain B, Crystal Structure Of Bradavidin
pdb|2Y32|C Chain C, Crystal Structure Of Bradavidin
pdb|2Y32|D Chain D, Crystal Structure Of Bradavidin
Length = 138
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 13 TRTGVYIGLMTTEA-NDFAEGNPEKLTGYETIGSTRAMLANRLSYAFNFSGLYGAPSRTG 71
+ TG G T A N EG P+ +TG+ G+T +S++ NF G TG
Sbjct: 22 SNTGAITGTYTNNAANSCDEGKPQGVTGWLAYGNT----GTAISFSVNFLGCGSTTVWTG 77
Query: 72 KIKDIASFDAEFF 84
++ + F ++
Sbjct: 78 QLNNATGFQGLWY 90
>pdb|2GHR|A Chain A, Crystal Structure Of Homoserine O-Succinyltransferase
(Np_981826.1) From Bacillus Cereus Atcc 10987 At 2.40 A
Resolution
Length = 302
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 62 GLYGAPSRTGKIKDIASFDAEFFGIHSKLANVMDPQLRMLLELT 105
G++ R +K + FD FF HS+ V + +R + ELT
Sbjct: 167 GVFEHEVREQHVKLLQGFDELFFAPHSRHTEVRESDIREVKELT 210
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,318,643
Number of Sequences: 62578
Number of extensions: 216260
Number of successful extensions: 366
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 351
Number of HSP's gapped (non-prelim): 15
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)